Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
CHD5	26038	broad.mit.edu	37	1	6181563	6181563	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:6181563C>T	uc001amb.1	-	32	4870	c.4770G>A	c.(4768-4770)CTG>CTA	p.L1590L	CHD5_uc001alz.1_Silent_p.L447L|CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA|CHD5_uc009vlx.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	1590					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		CCTGGACTTCCAGGGGCTGCC	0.587													19	6					0	0	0.000175454	0	0
NBPF1	55672	broad.mit.edu	37	1	16895719	16895719	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:16895719C>T	uc009vos.1	-	23	3351	c.2463G>A	c.(2461-2463)GAG>GAA	p.E821E	NBPF1_uc009vot.1_Silent_p.E279E|NBPF1_uc001ayz.1_Silent_p.E279E|NBPF1_uc010oce.1_Silent_p.E550E	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	821	NBPF 4.|Poly-Glu.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CCTCTTCAGACTCCTGCAGAT	0.488													11	163					0	0	0.000978159	0	0
ESPNP	284729	broad.mit.edu	37	1	17030538	17030538	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:17030538C>T	uc001azn.1	-	5	798	c.684G>A	c.(682-684)CAG>CAA	p.Q228Q		NR_026567				RecName: Full=Espin; AltName: Full=Ectoplasmic specialization protein; AltName: Full=Autosomal recessive deafness type 36 protein;												0						AGTTCAGAGGCTGGACCGACA	0.632													6	66					0	0	3.59834e-05	0	0
PIGV	55650	broad.mit.edu	37	1	27121634	27121634	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:27121634C>T	uc001bmz.2	+	3	1440	c.1109C>T	c.(1108-1110)CCC>CTC	p.P370L	PIGV_uc001bmy.2_Missense_Mutation_p.P135L|PIGV_uc009vso.2_Missense_Mutation_p.P370L|PIGV_uc010ofg.1_Missense_Mutation_p.P135L|PIGV_uc001bna.2_Missense_Mutation_p.P370L	NM_017837	NP_060307	Q9NUD9	PIGV_HUMAN	phosphatidylinositol glycan class V	370	Cytoplasmic (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	glycolipid mannosyltransferase activity			ovary(1)	1		all_cancers(24;3.93e-26)|all_epithelial(13;3.96e-23)|Colorectal(325;3.46e-05)|all_lung(284;5.94e-05)|Lung NSC(340;7.26e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00764)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.26e-54)|Epithelial(14;2.85e-53)|OV - Ovarian serous cystadenocarcinoma(117;1.91e-30)|Colorectal(126;1.31e-09)|COAD - Colon adenocarcinoma(152;3.45e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000504)|STAD - Stomach adenocarcinoma(196;0.000588)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.0222)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.153)|LUSC - Lung squamous cell carcinoma(448;0.227)		CTAGAGAAGCCCGATCTTGGA	0.542													74	45					0	0	0.000781405	0	0
BAI2	576	broad.mit.edu	37	1	32221987	32221987	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:32221987G>A	uc001btn.2	-	4	805	c.451C>T	c.(451-453)CTG>TTG	p.L151L	BAI2_uc010ogp.1_Silent_p.L139L|BAI2_uc010ogq.1_Silent_p.L151L|BAI2_uc001bto.2_Silent_p.L151L|BAI2_uc001btq.1_Silent_p.L139L|BAI2_uc010ogr.1_Silent_p.L139L	NM_001703	NP_001694	O60241	BAI2_HUMAN	brain-specific angiogenesis inhibitor 2	151	Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(5)|breast(4)|ovary(2)|central_nervous_system(1)|skin(1)	13		Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0606)|all_neural(195;0.0837)|Breast(348;0.174)		STAD - Stomach adenocarcinoma(196;0.0557)		TCGAAGTGCAGGAAGGTAAAG	0.687													13	10					0	0	0.00010058	0	0
Unknown	0	broad.mit.edu	37	1	33778437	33778437	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:33778437G>A	uc001bxd.1	-	2	78	c.78C>T	c.(76-78)GGC>GGT	p.G26G		NM_001080438	NP_001073907			RecName: Full=Alpha 1,3-galactosyltransferase 2;          Short=A3galt2;          EC=2.4.1.87; AltName: Full=Isoglobotriaosylceramide synthase; AltName: Full=iGb3 synthase;          Short=iGb3S; Flags: Precursor;																		ACAGAAACAGGCCTAAGAGGC	0.512													5	16					0	0	3.59834e-05	0	0
CYP4Z1	199974	broad.mit.edu	37	1	47548050	47548050	+	Missense_Mutation	SNP	C	T	T	rs146576339	byFrequency	TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:47548050C>T	uc001cqu.1	+	4	412	c.409C>T	c.(409-411)CGC>TGC	p.R137C		NM_178134	NP_835235	Q86W10	CP4Z1_HUMAN	cytochrome P450 4Z1	137	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			skin(1)	1						GAAAAAGCACCGCCAGATTGT	0.448													24	15					0	0	0.000586117	0	0
TNNI3K	51086	broad.mit.edu	37	1	74957790	74957790	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:74957790C>T	uc001dgf.1	+	23	2242	c.2191C>T	c.(2191-2193)CCT>TCT	p.P731S	TNNI3K_uc001dge.1_Missense_Mutation_p.P832S	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	731						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GCTGATGTCTCCTGCATCAAG	0.453													21	175					0	0	0.000586117	0	0
C1orf173	127254	broad.mit.edu	37	1	75037720	75037720	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:75037720C>T	uc001dgg.2	-	14	3893	c.3674G>A	c.(3673-3675)GGA>GAA	p.G1225E		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	1225	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTGCACCTTTCCTGCTGGCTC	0.627													13	50					0	0	0.000151284	0	0
CLCA2	9635	broad.mit.edu	37	1	86905984	86905984	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:86905984C>T	uc001dlr.3	+	8	1519	c.1357C>T	c.(1357-1359)CTG>TTG	p.L453L		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	453	VWFA.|Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		AGCCCCAAATCTGGAGGAATT	0.423													38	22					0	0	0.000270559	0	0
EVI5	7813	broad.mit.edu	37	1	93201978	93201978	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:93201978C>T	uc001dox.2	-	2	268	c.258G>A	c.(256-258)CTG>CTA	p.L86L	EVI5_uc010otf.1_Silent_p.L86L	NM_005665	NP_005656	O60447	EVI5_HUMAN	ecotropic viral integration site 5	86	Interaction with alpha-tubulin, gamma- tubulin, BIRC5 and FBXO5.|Ser-rich.				cell cycle|cell division|cell proliferation|multicellular organismal development	microtubule organizing center|nucleus|spindle	protein binding|Rab GTPase activator activity			ovary(1)|breast(1)	2		all_lung(203;0.00146)|Lung NSC(277;0.00565)|all_neural(321;0.185)|Melanoma(281;0.193)|Glioma(108;0.203)		Epithelial(280;8.09e-25)|OV - Ovarian serous cystadenocarcinoma(397;1.27e-22)|all cancers(265;1.74e-21)|GBM - Glioblastoma multiforme(16;0.00233)|BRCA - Breast invasive adenocarcinoma(282;0.211)		CCAGTTTAGCCAGGAGTTCTA	0.403													6	37					0	0	3.59834e-05	0	0
AGL	178	broad.mit.edu	37	1	100353539	100353540	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:100353539_100353540CC>TT	uc001dsi.1	+	21	3087_3088	c.2687_2688CC>TT	c.(2686-2688)GCC>GTT	p.A896V	AGL_uc001dsj.1_Missense_Mutation_p.A896V|AGL_uc001dsk.1_Missense_Mutation_p.A896V|AGL_uc001dsl.1_Missense_Mutation_p.A896V|AGL_uc001dsm.1_Missense_Mutation_p.A880V|AGL_uc001dsn.1_Missense_Mutation_p.A879V	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	896	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		CTTAGTCTTGCCTCCAGATTAA	0.351													17	18					0	0	6.4e-05	0	0
CD2	914	broad.mit.edu	37	1	117311185	117311185	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:117311185C>T	uc001egu.3	+	5	865	c.836C>T	c.(835-837)TCC>TTC	p.S279F		NM_001767	NP_001758	P06729	CD2_HUMAN	CD2 molecule precursor	279	Cytoplasmic (Potential).				blood coagulation|cell surface receptor linked signaling pathway|cell-cell adhesion|induction of apoptosis|leukocyte migration|membrane raft polarization|natural killer cell activation|positive regulation of myeloid dendritic cell activation|regulation of T cell differentiation|T cell activation	integral to plasma membrane	receptor activity			breast(1)	1	Lung SC(450;0.225)	all_cancers(81;3.15e-06)|Acute lymphoblastic leukemia(138;1.7e-08)|all_epithelial(167;8.38e-07)|all_lung(203;3.37e-06)|Lung NSC(69;2.31e-05)		Epithelial(280;6.71e-26)|OV - Ovarian serous cystadenocarcinoma(397;4.74e-24)|all cancers(265;1.93e-22)|Lung(183;0.0543)|Kidney(133;0.0813)|Colorectal(144;0.174)|KIRC - Kidney renal clear cell carcinoma(1967;0.176)|LUSC - Lung squamous cell carcinoma(189;0.189)|BRCA - Breast invasive adenocarcinoma(282;0.201)	Alefacept(DB00092)	CCAGCAACTTCCCAACATCCT	0.582													19	4					0	0	0.000958276	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367739	145367739	+	Silent	SNP	A	G	G	rs146714035	by1000genomes	TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:145367739A>G	uc001end.3	+	85	10595	c.10560A>G	c.(10558-10560)AAA>AAG	p.K3520K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3445											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ggaaggggaaaaaaagaaggg	0.244													4	42					0	0	0.00024832	0	0
LINGO4	339398	broad.mit.edu	37	1	151773683	151773683	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:151773683C>T	uc001ezf.1	-	2	1688	c.1498G>A	c.(1498-1500)GAA>AAA	p.E500K		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	500	Extracellular (Potential).|Ig-like C2-type.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			TGGATGACTTCCAGCCAGGTC	0.572													91	65					0	0	0.000781405	0	0
HRNR	388697	broad.mit.edu	37	1	152188349	152188349	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:152188349G>A	uc001ezt.1	-	3	5832	c.5756C>T	c.(5755-5757)TCA>TTA	p.S1919L		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1919	21.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCTGGAAGATGAACCTGAGCT	0.577													80	746					0	0	0.000781405	0	0
ATP8B2	57198	broad.mit.edu	37	1	154316679	154316679	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:154316679C>T	uc001fex.2	+	19	2083	c.2083C>T	c.(2083-2085)CTC>TTC	p.L695F		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	681	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GACCATTGCCCTCCTGACACT	0.537													7	48					0	0	0.000157383	0	0
APCS	325	broad.mit.edu	37	1	159557901	159557901	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:159557901G>A	uc001ftv.2	+	2	171	c.75G>A	c.(73-75)GGG>GGA	p.G25G		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	25	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					ACCTCAGTGGGAAGGTGTTTG	0.393													43	21					0	0	0.000374591	0	0
APCS	325	broad.mit.edu	37	1	159558413	159558413	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:159558413C>T	uc001ftv.2	+	2	683	c.587C>T	c.(586-588)CCT>CTT	p.P196L		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	196	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					CAGGGTACCCCTCTCCCTGCC	0.502													19	14					0	0	0.000175454	0	0
TOMM40L	84134	broad.mit.edu	37	1	161198560	161198560	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:161198560C>T	uc001fzd.2	+	9	969	c.740C>T	c.(739-741)TCC>TTC	p.S247F	TOMM40L_uc010pkl.1_Missense_Mutation_p.S213F|TOMM40L_uc009wue.2_Missense_Mutation_p.S129F|TOMM40L_uc009wuf.1_RNA|TOMM40L_uc001fze.2_Missense_Mutation_p.S247F	NM_032174	NP_115550	Q969M1	TM40L_HUMAN	translocase of outer mitochondrial membrane 40	247					protein transport	mitochondrial outer membrane|pore complex	porin activity|voltage-gated anion channel activity			large_intestine(1)	1	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			ACAACATTCTCCTTTGGTTAC	0.493													9	36					0	0	0.000978159	0	0
LMX1A	4009	broad.mit.edu	37	1	165180005	165180005	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:165180005C>T	uc001gcy.1	-	5	899	c.678G>A	c.(676-678)GAG>GAA	p.E226E	LMX1A_uc001gcz.1_Silent_p.E226E|LMX1A_uc001gcw.1_5'UTR|LMX1A_uc001gcx.1_5'UTR	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	226	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CAGCCAGAGTCTCTCTCACCT	0.478													26	18					0	0	0.000184323	0	0
BAT2L2	23215	broad.mit.edu	37	1	171519301	171519301	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:171519301T>G	uc010pmg.1	+	18	5309	c.5043T>G	c.(5041-5043)TTT>TTG	p.F1681L	BAT2L2_uc010pmh.1_Missense_Mutation_p.F658L	NM_015172	NP_055987	Q9Y520	PRC2C_HUMAN	HBxAg transactivated protein 2	1681							protein C-terminus binding				0						ATGATGGTTTTACTGAAGTGG	0.358													3	24					0	0	6.4e-05	0	0
TNN	63923	broad.mit.edu	37	1	175066699	175066699	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:175066699G>A	uc001gkl.1	+	8	1848	c.1735G>A	c.(1735-1737)GGG>AGG	p.G579R	TNN_uc010pmx.1_Intron	NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	579	Fibronectin type-III 4.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GGTTCTGGTGGGGAAGGAGCA	0.607													11	34					0	0	0.000151284	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200817884	200817884	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:200817884C>T	uc001gvl.2	+	12	2290	c.2020C>T	c.(2020-2022)CCT>TCT	p.P674S	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.P663S|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.P647S	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	674						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						AGCTTTGAGTCCTTGTCCAAG	0.418													45	20					0	0	0.000680045	0	0
IGFN1	91156	broad.mit.edu	37	1	201196074	201196074	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:201196074G>A	uc001gwc.2	+	12	3103	c.2331G>A	c.(2329-2331)CTG>CTA	p.L777L	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CCCGGTTCCTGGTGGGCCTGC	0.662													58	28					0	0	0.000781405	0	0
NAV1	89796	broad.mit.edu	37	1	201750396	201750396	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:201750396C>T	uc001gwu.2	+	5	1969	c.1622C>T	c.(1621-1623)TCC>TTC	p.S541F	NAV1_uc001gwv.1_Missense_Mutation_p.S49F|NAV1_uc001gww.1_Missense_Mutation_p.S150F|NAV1_uc001gwx.2_Missense_Mutation_p.S150F|NAV1_uc001gwy.1_5'Flank	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	541					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GCTGTAACTTCCCCCATCACT	0.537													5	24					0	0	0.000602214	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204412635	204412635	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:204412635C>T	uc001haw.2	-	20	3437	c.2958G>A	c.(2956-2958)CTG>CTA	p.L986L	PIK3C2B_uc010pqv.1_Silent_p.L958L	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	986					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			ACTCTTCTCTCAGCCCCTTGC	0.592													71	55					0	0	0.000781405	0	0
CNTN2	6900	broad.mit.edu	37	1	205033865	205033866	+	Silent	DNP	CC	TT	TT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:205033865_205033866CC>TT	uc001hbr.2	+	12	1775_1776	c.1506_1507CC>TT	c.(1504-1509)ATCCTA>ATTTTA	p.502_503IL>IL	CNTN2_uc001hbq.1_Silent_p.393_394IL>IL|CNTN2_uc001hbs.2_Silent_p.290_291IL>IL	NM_005076	NP_005067	Q02246	CNTN2_HUMAN	contactin 2 precursor	502_503	Ig-like C2-type 5.				axon guidance|clustering of voltage-gated potassium channels	anchored to membrane|juxtaparanode region of axon|myelin sheath|node of Ranvier|synapse part	identical protein binding			ovary(1)	1	all_cancers(21;0.144)|Breast(84;0.0437)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GCACTGGAATCCTATCTGTGCG	0.55													19	98					0	0	6.4e-05	0	0
FAIM3	9214	broad.mit.edu	37	1	207087397	207087397	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:207087397C>T	uc001hey.2	-	2	259	c.80G>A	c.(79-81)GGG>GAG	p.G27E	FAIM3_uc010prz.1_Intron|FAIM3_uc010psa.1_5'UTR|FAIM3_uc010psb.1_Missense_Mutation_p.G27E	NM_005449	NP_005440	O60667	FAIM3_HUMAN	Fas apoptotic inhibitory molecule 3 isoform a	27	Extracellular (Potential).				anti-apoptosis|cellular defense response	integral to membrane				central_nervous_system(1)	1	Breast(84;0.201)					GCCCAGCTCCCCCTCTACCTT	0.468													51	26					0	0	0.000781405	0	0
TAF1A	9015	broad.mit.edu	37	1	222742994	222742995	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:222742994_222742995CC>AA	uc009xdz.1	-	7	940_941	c.751_752GG>TT	c.(751-753)GGG>TTG	p.G251L	TAF1A_uc001hni.1_Missense_Mutation_p.G137L|TAF1A_uc001hnj.2_Missense_Mutation_p.G251L|TAF1A_uc001hnk.2_Missense_Mutation_p.G137L|TAF1A_uc010pur.1_Missense_Mutation_p.G251L	NM_139352	NP_647603	Q15573	TAF1A_HUMAN	TBP-associated factor 1A isoform 2	251					regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase I promoter	RNA polymerase I transcription factor complex	DNA binding				0				GBM - Glioblastoma multiforme(131;0.0186)		ATCTCGATCCCCATAGAATTCC	0.337													11	445					0	0	6.4e-05	0	0
C1orf65	164127	broad.mit.edu	37	1	223568233	223568233	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:223568233C>T	uc001hoa.2	+	1	1519	c.1416C>T	c.(1414-1416)CGC>CGT	p.R472R		NM_152610	NP_689823	Q8N715	CA065_HUMAN	hypothetical protein LOC164127	472	Potential.									central_nervous_system(1)|skin(1)	2				GBM - Glioblastoma multiforme(131;0.0704)		AGCGGCAACGCGAGCTGAGGG	0.607													9	21					0	0	0.000442599	0	0
OBSCN	84033	broad.mit.edu	37	1	228481085	228481085	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:228481085G>A	uc009xez.1	+	41	10943	c.10899G>A	c.(10897-10899)AGG>AGA	p.R3633R	OBSCN_uc001hsn.2_Silent_p.R3633R|OBSCN_uc001hsq.1_Silent_p.R889R	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	3633	Ig-like 37.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AGGGTCTGAGGAACGAAGAGG	0.542													7	15					0	0	8.12818e-05	0	0
OR2T33	391195	broad.mit.edu	37	1	248436865	248436865	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr1:248436865C>T	uc010pzi.1	-	1	252	c.252G>A	c.(250-252)TTG>TTA	p.L84L		NM_001004695	NP_001004695	Q8NG76	O2T33_HUMAN	olfactory receptor, family 2, subfamily T,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TACTTCCGGTCAAGTAGTCAG	0.577													35	112					0	0	0.000953801	0	0
KIAA1217	56243	broad.mit.edu	37	10	24790328	24790328	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:24790328G>A	uc001iru.3	+	9	2258	c.1855G>A	c.(1855-1857)GGG>AGG	p.G619R	KIAA1217_uc001irs.2_Missense_Mutation_p.G539R|KIAA1217_uc001irt.3_Missense_Mutation_p.G584R|KIAA1217_uc010qcy.1_Missense_Mutation_p.G584R|KIAA1217_uc010qcz.1_Missense_Mutation_p.G584R|KIAA1217_uc001irv.1_Missense_Mutation_p.G434R|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.G302R|KIAA1217_uc001irz.2_Missense_Mutation_p.G302R|KIAA1217_uc001irx.2_Missense_Mutation_p.G302R|KIAA1217_uc001iry.2_Missense_Mutation_p.G302R	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	619					embryonic skeletal system development	cytoplasm		p.G619G(1)		ovary(5)|skin(2)	7						TGTGTCTGGTGGGAAGATGCT	0.557													6	31					0	0	3.59834e-05	0	0
ARMC4	55130	broad.mit.edu	37	10	28101489	28101489	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:28101489G>A	uc009xky.2	-	20	3185	c.3087C>T	c.(3085-3087)TCC>TCT	p.S1029S	ARMC4_uc010qds.1_Missense_Mutation_p.P595L|ARMC4_uc010qdt.1_Silent_p.S721S|ARMC4_uc001itz.2_Silent_p.S1029S	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	1029	ARM 10.						binding			ovary(4)|skin(2)	6						TGCGGATATTGGATATACAAC	0.458													17	87					0	0	0.00074312	0	0
ZNF33A	7581	broad.mit.edu	37	10	38345158	38345158	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:38345158C>T	uc001izh.2	+	5	2281	c.2103C>T	c.(2101-2103)TTC>TTT	p.F701F	ZNF33A_uc001izg.2_Silent_p.F702F|ZNF33A_uc010qev.1_Silent_p.F708F|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	701	C2H2-type 14.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GGAAATTCTTCAGGCACAAAT	0.393													25	18					0	0	0.00047179	0	0
OGDHL	55753	broad.mit.edu	37	10	50959932	50959932	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:50959932C>T	uc001jie.2	-	6	832	c.690G>A	c.(688-690)GTG>GTA	p.V230V	OGDHL_uc009xog.2_Silent_p.V257V|OGDHL_uc010qgt.1_Silent_p.V173V|OGDHL_uc010qgu.1_Silent_p.V21V|OGDHL_uc009xoh.2_Silent_p.V21V	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	230					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						AGAACTGCATCACACCAGGGG	0.602													54	60					0	0	0.000781405	0	0
JMJD1C	221037	broad.mit.edu	37	10	65024429	65024429	+	Silent	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:65024429A>G	uc001jmn.2	-	3	729	c.429T>C	c.(427-429)AGT>AGC	p.S143S	JMJD1C_uc001jml.2_Intron|JMJD1C_uc001jmm.2_5'UTR|JMJD1C_uc010qiq.1_5'UTR|JMJD1C_uc009xpi.2_5'UTR|JMJD1C_uc009xpj.1_Intron|JMJD1C_uc001jmp.1_5'UTR	NM_032776	NP_116165	Q15652	JHD2C_HUMAN	jumonji domain containing 1C isoform a	143					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	histone demethylase activity (H3-K9 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|thyroid hormone receptor binding			ovary(4)|breast(1)|central_nervous_system(1)	6	Prostate(12;0.0119)|all_hematologic(501;0.191)					GCTGAAAGGCACTATCTTCAG	0.313													17	49					0	0	0.000566183	0	0
IDE	3416	broad.mit.edu	37	10	94267332	94267332	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:94267332C>T	uc001kia.2	-	9	1321	c.1245G>A	c.(1243-1245)AAG>AAA	p.K415K		NM_004969	NP_004960	P14735	IDE_HUMAN	insulin-degrading enzyme isoform 1 precursor	415					beta-amyloid metabolic process|bradykinin catabolic process|interspecies interaction between organisms|sex differentiation	cell surface|extracellular space|soluble fraction	ATP binding|metalloendopeptidase activity|protein homodimerization activity|signal transducer activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3					Bacitracin(DB00626)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	ACAAAAGTACCTTGCACTCTT	0.313													172	174					0	0	0.000781405	0	0
BLNK	29760	broad.mit.edu	37	10	97983740	97983740	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:97983740G>A	uc001kls.3	-	6	545	c.367C>T	c.(367-369)CGA>TGA	p.R123*	BLNK_uc001kme.3_Nonsense_Mutation_p.R41*|BLNK_uc001klt.3_Nonsense_Mutation_p.R37*|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_Nonsense_Mutation_p.R41*|BLNK_uc001klv.3_Intron|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Nonsense_Mutation_p.R123*|BLNK_uc001kly.3_Nonsense_Mutation_p.R123*|BLNK_uc001klz.3_Intron|BLNK_uc001kma.3_Nonsense_Mutation_p.R123*|BLNK_uc001kmb.3_Intron|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_Nonsense_Mutation_p.R41*|BLNK_uc009xvd.2_Intron	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	123	Pro-rich.				B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		TGGCTTGATCGATTGTCTTGA	0.498													56	55					0	0	0.000781405	0	0
PDZD7	79955	broad.mit.edu	37	10	102789856	102789856	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:102789856G>C	uc001kso.1	-	2	336	c.121C>G	c.(121-123)CGA>GGA	p.R41G	PDZD7_uc001ksn.2_Missense_Mutation_p.R41G|SFXN3_uc001ksp.2_5'Flank|SFXN3_uc001ksq.2_5'Flank|SFXN3_uc010qpx.1_5'Flank	NM_024895	NP_079171	Q9H5P4	PDZD7_HUMAN	PDZ domain containing 7	41						cilium|nucleus	protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3				Epithelial(162;6.98e-09)|all cancers(201;3.55e-07)		AGCAGGTATCGCGTTGCGGTG	0.652													12	49					0	0	0.000151284	0	0
SORCS3	22986	broad.mit.edu	37	10	106918692	106918692	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:106918692C>T	uc001kyi.1	+	11	1899	c.1672C>T	c.(1672-1674)CCA>TCA	p.P558S		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	558	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		CTCTGAAAATCCATATTCCTC	0.448													10	42					0	0	0.000151284	0	0
HTRA1	5654	broad.mit.edu	37	10	124273856	124273856	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:124273856C>T	uc001lgj.2	+	9	1552	c.1424C>T	c.(1423-1425)CCC>CTC	p.P475L		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	475					proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				ACAGTGATTCCCGAAGAAATT	0.507													14	55					0	0	0.000422831	0	0
DMBT1	1755	broad.mit.edu	37	10	124395627	124395627	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:124395627C>T	uc001lgk.1	+	50	6388	c.6282C>T	c.(6280-6282)TTC>TTT	p.F2094F	DMBT1_uc001lgl.1_Silent_p.F2084F|DMBT1_uc001lgm.1_Silent_p.F1466F|DMBT1_uc009xzz.1_Silent_p.F2093F|DMBT1_uc010qtx.1_Silent_p.F814F|DMBT1_uc009yab.1_Silent_p.F797F|DMBT1_uc009yac.1_Silent_p.F388F	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2094	CUB 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CCTCCAACTTCATGTCCATTC	0.512													18	17					0	0	0.000566183	0	0
CUZD1	50624	broad.mit.edu	37	10	124598677	124598677	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr10:124598677G>A	uc001lgq.2	-	3	636	c.304C>T	c.(304-306)CTG>TTG	p.L102L	CUZD1_uc001lgp.2_5'Flank|CUZD1_uc009yad.2_5'Flank|CUZD1_uc009yaf.2_Intron|CUZD1_uc001lgr.2_5'UTR|CUZD1_uc010qty.1_5'UTR|CUZD1_uc009yae.2_5'UTR|CUZD1_uc001lgs.2_Silent_p.L102L|CUZD1_uc010qtz.1_Silent_p.L102L	NM_022034	NP_071317	Q86UP6	CUZD1_HUMAN	CUB and zona pellucida-like domains 1 precursor	102	CUB 1.|Extracellular (Potential).				cell cycle|cell division|cell proliferation|substrate-dependent cell migration, cell attachment to substrate|trypsinogen activation	integral to membrane|transport vesicle membrane|zymogen granule membrane				ovary(1)|skin(1)	2		all_neural(114;0.169)|Glioma(114;0.222)		Colorectal(40;0.126)|COAD - Colon adenocarcinoma(40;0.141)		TGCCCTAGCAGAGGCCCATTG	0.418													36	107					0	0	0.000228196	0	0
IFITM3	10410	broad.mit.edu	37	11	320742	320742	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:320742C>T	uc001lpa.2	-	1	173	c.72G>A	c.(70-72)AAG>AAA	p.K24K	uc001loz.2_Intron	NM_021034	NP_066362	Q01628	IFM3_HUMAN	interferon-induced transmembrane protein 3	24	Extracellular (Potential).				response to virus|type I interferon-mediated signaling pathway	integral to membrane|plasma membrane				central_nervous_system(7)	7		all_cancers(49;2e-09)|all_epithelial(84;3.36e-06)|Breast(177;0.000162)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.0538)|all_lung(207;0.0713)		all cancers(45;8.85e-28)|Epithelial(43;5.52e-27)|OV - Ovarian serous cystadenocarcinoma(40;1.11e-20)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0327)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGTGCTCCTCCTTGAGCATCT	0.632													52	63					0	0	0.000781405	0	0
LRRC56	115399	broad.mit.edu	37	11	541582	541582	+	Nonsense_Mutation	SNP	G	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:541582G>T	uc010qvz.1	+	5	728	c.223G>T	c.(223-225)GAG>TAG	p.E75*		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	75										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GAGGACGCTGGAGATGTGTGT	0.642													19	31					3.10358e-05	0.00031141	0.000295444	1	0
TSSC4	10078	broad.mit.edu	37	11	2424493	2424493	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:2424493G>A	uc001lwj.2	+	4	991	c.630G>A	c.(628-630)GAG>GAA	p.E210E	TSSC4_uc001lwi.2_Silent_p.E146E|TSSC4_uc001lwk.2_Silent_p.E210E|TSSC4_uc001lwl.2_Silent_p.E210E	NM_005706	NP_005697	Q9Y5U2	TSSC4_HUMAN	tumor suppressing subtransferable candidate 4	210											0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.00145)|LUSC - Lung squamous cell carcinoma(625;0.19)		GCTGTGGGGAGGGGAGGGTCA	0.662													110	182					0	0	0.000781405	0	0
OR51E2	81285	broad.mit.edu	37	11	4703441	4703441	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:4703441G>A	uc001lzk.2	-	2	745	c.501C>T	c.(499-501)TTC>TTT	p.F167F		NM_030774	NP_110401	Q9H255	O51E2_HUMAN	olfactory receptor, family 51, subfamily E,	167	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(3)|ovary(2)	5		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;3e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00476)|LUSC - Lung squamous cell carcinoma(625;0.2)		TGGAGTGGCAGAAGGCCAGCC	0.512													17	57					0	0	0.00074312	0	0
OR52E2	119678	broad.mit.edu	37	11	5080763	5080763	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:5080763G>A	uc010qyw.1	-	1	95	c.95C>T	c.(94-96)CCC>CTC	p.P32L		NM_001005164	NP_001005164	Q8NGJ4	O52E2_HUMAN	olfactory receptor, family 52, subfamily E,	32	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.03e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.191)		AGCACAGAAGGGAAAGCCGAT	0.502													20	14					0	0	0.000175454	0	0
NELL1	4745	broad.mit.edu	37	11	21135260	21135260	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:21135260G>A	uc001mqe.2	+	13	1579	c.1426G>A	c.(1426-1428)GAA>AAA	p.E476K	NELL1_uc001mqf.2_Missense_Mutation_p.E476K|NELL1_uc009yid.2_Missense_Mutation_p.E504K|NELL1_uc010rdo.1_Missense_Mutation_p.E419K|NELL1_uc010rdp.1_Missense_Mutation_p.E236K	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	476	EGF-like 3.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						CTCTTGTACAGGTGAGCTTTA	0.393													13	28					0	0	0.000219431	0	0
COMMD9	29099	broad.mit.edu	37	11	36293339	36293339	+	RNA	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:36293339G>A	uc009yki.1	-	2		c.233C>T						Q9P000	COMD9_HUMAN	Homo sapiens cDNA FLJ45212 fis, clone BRCAN2018667.											ovary(1)	1	all_lung(20;0.211)	all_hematologic(20;0.107)				GGTGTGGCAGGAAGATGGACC	0.532													41	68					0	0	0.000781405	0	0
PHF21A	51317	broad.mit.edu	37	11	46001479	46001479	+	Silent	SNP	T	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:46001479T>G	uc001ncc.3	-	6	816	c.192A>C	c.(190-192)GTA>GTC	p.V64V	PHF21A_uc001ncb.3_Silent_p.V64V|PHF21A_uc009ykx.2_Silent_p.V64V|PHF21A_uc001nce.2_Silent_p.V64V	NM_001101802	NP_001095272	Q96BD5	PF21A_HUMAN	BRAF35/HDAC2 complex isoform a	64	Gln-rich.				blood coagulation|chromatin modification|negative regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|transcription, DNA-dependent	histone deacetylase complex	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2						GTTCTTGCTTTACTATCAGGT	0.299													21	78					0	0	0.000375601	0	0
RAPSN	5913	broad.mit.edu	37	11	47469652	47469652	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:47469652G>A	uc001nfi.1	-	2	457	c.243C>T	c.(241-243)TTC>TTT	p.F81F	RAPSN_uc001nfj.1_Silent_p.F81F|RAPSN_uc009yls.1_Silent_p.F81F	NM_005055	NP_005046	Q13702	RAPSN_HUMAN	43 kD receptor-associated protein of the synapse	81					synaptic transmission, cholinergic	cell junction|cytoskeleton|postsynaptic membrane	acetylcholine receptor binding|zinc ion binding			ovary(1)	1						TCTCCAGGAGGAAGTCGGCAT	0.612													6	31					0	0	3.59834e-05	0	0
OR5R1	219479	broad.mit.edu	37	11	56185123	56185123	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:56185123C>T	uc010rji.1	-	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ATCAGAATTTCCTTCATGTGT	0.433													14	20					0	0	0.000151284	0	0
OR5M3	219482	broad.mit.edu	37	11	56237941	56237941	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:56237941A>C	uc010rjk.1	-	1	33	c.33T>G	c.(31-33)ATT>ATG	p.I11M		NM_001004742	NP_001004742	Q8NGP4	OR5M3_HUMAN	olfactory receptor, family 5, subfamily M,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GCCCCAAAAGAATGAACTCTG	0.358													2	7					0	0	6.4e-05	0	0
OR5B3	441608	broad.mit.edu	37	11	58170611	58170611	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:58170611G>A	uc010rkf.1	-	1	272	c.272C>T	c.(271-273)TCT>TTT	p.S91F		NM_001005469	NP_001005469	Q8NH48	OR5B3_HUMAN	olfactory receptor, family 5, subfamily B,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TGCATTGTAAGAGATGACCTT	0.433													20	41					0	0	0.000295444	0	0
OR4D9	390199	broad.mit.edu	37	11	59283084	59283084	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:59283084G>A	uc010rkv.1	+	1	699	c.699G>A	c.(697-699)AGG>AGA	p.R233R		NM_001004711	NP_001004711	Q8NGE8	OR4D9_HUMAN	olfactory receptor, family 4, subfamily D,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGAAGGCAGGAGGAAAGCCA	0.512													65	92					0	0	0.000781405	0	0
PGA5	5222	broad.mit.edu	37	11	61017253	61017253	+	Missense_Mutation	SNP	G	A	A	rs139795742		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:61017253G>A	uc001nqz.2	+	7	916	c.886G>A	c.(886-888)GAC>AAC	p.D296N		NM_014224	NP_055039	P00790	PEPA_HUMAN	pepsinogen 5, group I precursor	296					digestion|proteolysis	extracellular region	aspartic-type endopeptidase activity			skin(1)	1						CATCCAGAGCGACATCGGAGC	0.612													51	128					0	0	0.000781405	0	0
SIPA1	6494	broad.mit.edu	37	11	65417243	65417244	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:65417243_65417244CC>TT	uc001ofb.2	+	12	2820_2821	c.2653_2654CC>TT	c.(2653-2655)CCC>TTC	p.P885F	SIPA1_uc010rom.1_Missense_Mutation_p.P783F|SIPA1_uc001ofd.2_Missense_Mutation_p.P885F	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	885					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						GCCAGGCAGTCCCAGTGGCTCT	0.599													17	36					0	0	6.4e-05	0	0
STARD10	10809	broad.mit.edu	37	11	72492032	72492032	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:72492032C>T	uc001osy.2	-	2	486	c.195G>A	c.(193-195)CTG>CTA	p.L65L	ARAP1_uc001osv.2_Intron|STARD10_uc001osz.3_Silent_p.L65L|STARD10_uc001ota.2_Intron|STARD10_uc001otb.2_Silent_p.L65L	NM_006645	NP_006636	Q9Y365	PCTL_HUMAN	START domain containing 10	65	START.										0			BRCA - Breast invasive adenocarcinoma(5;7.08e-07)			TGATCTTGTGCAGCGTCCGAT	0.612													39	121					0	0	0.000509022	0	0
CCDC83	220047	broad.mit.edu	37	11	85606409	85606409	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:85606409G>A	uc001pbh.1	+	6	1097	c.585G>A	c.(583-585)AAG>AAA	p.K195K	CCDC83_uc001pbg.1_Silent_p.K195K|CCDC83_uc001pbi.1_RNA|CCDC83_uc001pbj.1_Silent_p.K96K	NM_173556	NP_775827	Q8IWF9	CCD83_HUMAN	coiled-coil domain containing 83	195										skin(1)	1		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				TGGACCAAAAGAAGGAATGGG	0.279													41	55					0	0	0.000781405	0	0
DYNC2H1	79659	broad.mit.edu	37	11	102988580	102988580	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:102988580A>T	uc001pho.2	+	6	1131	c.987A>T	c.(985-987)AAA>AAT	p.K329N	DYNC2H1_uc001phn.1_Missense_Mutation_p.K329N|DYNC2H1_uc009yxe.1_Missense_Mutation_p.K329N	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	329	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		AACTTGGCAAACGCCTTGAAG	0.333													8	26					0	0	0.000157383	0	0
LOC341056	341056	broad.mit.edu	37	11	122888438	122888438	+	RNA	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr11:122888438C>T	uc010rzt.1	+	1		c.165C>T				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						ACTGGAGGCCCCGAAATGGCT	0.607													18	26					0	0	0.000175454	0	0
ANO2	57101	broad.mit.edu	37	12	5687593	5687593	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:5687593G>A	uc001qnm.2	-	22	2397	c.2325C>T	c.(2323-2325)CTC>CTT	p.L775L		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	780	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						TCTTTGCATCGAGCCGCACTT	0.542													21	36					0	0	0.000375601	0	0
NANOG	79923	broad.mit.edu	37	12	7947353	7947353	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:7947353C>T	uc009zfy.1	+	4	796	c.580C>T	c.(580-582)CCA>TCA	p.P194S		NM_024865	NP_079141	Q9H9S0	NANOG_HUMAN	Nanog homeobox	194					cell proliferation|embryo development|somatic stem cell maintenance	nucleolus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0				Kidney(36;0.0872)		TGGGAACCTTCCAATGTGGAG	0.542													20	5					0	0	0.000295444	0	0
Unknown	0	broad.mit.edu	37	12	8048124	8048124	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:8048124C>T	uc001qtp.1	+	2	112	c.32C>T	c.(31-33)TCT>TTT	p.S11F						RecName: Full=Putative homeobox protein NANOG2;																		AGCCATGATTCTTCCACCAGT	0.438													36	63					0	0	0.000509022	0	0
DDX12	440081	broad.mit.edu	37	12	9578080	9578080	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:9578080G>A	uc010sgs.1	-	17	1944	c.1749C>T	c.(1747-1749)ATC>ATT	p.I583I		NM_004400	NP_004391			DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 12												0						GGCGGCTCAGGATGACCCTGC	0.597													4	30					0	0	3.59834e-05	0	0
LRP6	4040	broad.mit.edu	37	12	12334021	12334021	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:12334021C>T	uc001rah.3	-	6	1471	c.1329G>A	c.(1327-1329)GAG>GAA	p.E443E	BCL2L14_uc001raf.1_Intron|LRP6_uc010shl.1_Silent_p.E443E	NM_002336	NP_002327	O75581	LRP6_HUMAN	low density lipoprotein receptor-related protein	443	Extracellular (Potential).|LDL-receptor class B 7.|Beta-propeller 2.				cellular response to cholesterol|negative regulation of protein phosphorylation|negative regulation of protein serine/threonine kinase activity|negative regulation of smooth muscle cell apoptosis|neural crest formation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell cycle|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway involved in dorsal/ventral axis specification|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	cell surface|cytoplasmic vesicle|endoplasmic reticulum|integral to membrane|plasma membrane	coreceptor activity|frizzled binding|kinase inhibitor activity|low-density lipoprotein receptor activity|protein homodimerization activity|toxin transporter activity|Wnt-protein binding			lung(4)|skin(4)|ovary(2)|kidney(1)|central_nervous_system(1)	12		Prostate(47;0.0865)				CCTCTAAGTCCTCTGAAATCA	0.448													145	228					0	0	0.000781405	0	0
DDX11	1663	broad.mit.edu	37	12	31249911	31249911	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:31249911C>T	uc001rjt.1	+	17	2000	c.1749C>T	c.(1747-1749)ATC>ATT	p.I583I	DDX11_uc001rjr.1_Silent_p.I583I|DDX11_uc001rjs.1_Silent_p.I583I|DDX11_uc001rju.1_Silent_p.I261I|DDX11_uc001rjv.1_Silent_p.I583I|DDX11_uc001rjw.1_Silent_p.I557I|DDX11_uc009zjn.1_RNA	NM_152438	NP_689651	Q96FC9	DDX11_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 11	583					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|mitotic sister chromatid segregation|positive regulation of cell proliferation|S phase of mitotic cell cycle|sister chromatid cohesion	midbody|nuclear chromatin|nucleolus|spindle pole	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|RNA binding			breast(3)	3	all_cancers(9;1.77e-11)|all_lung(12;6.21e-11)|all_epithelial(9;6.49e-11)|Lung NSC(12;1.06e-08)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Lung SC(12;0.0592)|Esophageal squamous(101;0.233)					GCAGGGTCATCCTGAGCCGCC	0.597										Multiple Myeloma(12;0.14)			9	20					0	0	0.000274275	0	0
FAM60A	58516	broad.mit.edu	37	12	31448266	31448266	+	Silent	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:31448266A>G	uc010sjz.1	-	3	369	c.130T>C	c.(130-132)TTG>CTG	p.L44L	FAM60A_uc001rkd.2_Silent_p.L44L|FAM60A_uc010ska.1_Silent_p.L44L|FAM60A_uc001rke.2_Silent_p.L44L|FAM60A_uc010skb.1_Intron|FAM60A_uc001rkc.2_Silent_p.L69L	NM_021238	NP_067061	Q9NP50	FA60A_HUMAN	family with sequence similarity 60, member A	44											0	all_cancers(9;5.22e-13)|all_epithelial(9;4e-13)|all_lung(12;1.2e-11)|Lung NSC(12;2.17e-09)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0207)|Lung SC(12;0.0592)|Esophageal squamous(101;0.162)					GTCTCATGCAATCTGATAAGA	0.383													12	55					0	0	0.000219431	0	0
PKP2	5318	broad.mit.edu	37	12	32945415	32945415	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:32945415C>T	uc001rlj.3	-	14	2704	c.2589G>A	c.(2587-2589)AAG>AAA	p.K863K	PKP2_uc001rlk.3_Silent_p.K819K|PKP2_uc010skj.1_Silent_p.K816K	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	863					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					AATCTGTCTTCTTAAACTGAG	0.423													34	48					0	0	0.00111076	0	0
PDZRN4	29951	broad.mit.edu	37	12	41967311	41967311	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:41967311C>G	uc010skn.1	+	10	2201	c.2133C>G	c.(2131-2133)ATC>ATG	p.I711M	PDZRN4_uc001rmq.3_Missense_Mutation_p.I652M|PDZRN4_uc009zjz.2_Missense_Mutation_p.I650M|PDZRN4_uc001rmr.2_Missense_Mutation_p.I537M	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	910							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				GAGACCGAATCCTGAAGGAAC	0.517													19	29					0	0	0.00074312	0	0
HDAC7	51564	broad.mit.edu	37	12	48189006	48189006	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:48189006G>A	uc010slo.1	-	11	1440	c.1245C>T	c.(1243-1245)CCC>CCT	p.P415P	HDAC7_uc001rqe.2_5'Flank|HDAC7_uc001rqj.3_Silent_p.P378P|HDAC7_uc001rqk.3_Silent_p.P398P	NM_015401	NP_056216	Q8WUI4	HDAC7_HUMAN	histone deacetylase 7 isoform a	376	Transcription repression 2 (By similarity).				negative regulation of interleukin-2 production|negative regulation of osteoblast differentiation|positive regulation of cell migration involved in sprouting angiogenesis|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	activating transcription factor binding|histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			lung(1)|breast(1)	2				GBM - Glioblastoma multiforme(48;0.137)		GCTCCAGGCGGGGCTGCATGG	0.647													37	56					0	0	0.000509022	0	0
MLL2	8085	broad.mit.edu	37	12	49420214	49420215	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:49420214_49420215GG>AA	uc001rta.3	-	48	15534_15535	c.15534_15535CC>TT	c.(15532-15537)TTCCGT>TTTTGT	p.R5179C		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	5179	FYR N-terminal.		R -> H (in KABS).		chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						CCCCCCACACGGAACATGTGCA	0.589			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			10	23					0	0	6.4e-05	0	0
MLL2	8085	broad.mit.edu	37	12	49425221	49425221	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:49425221G>A	uc001rta.3	-	39	13267	c.13267C>T	c.(13267-13269)CCA>TCA	p.P4423S		NM_003482	NP_003473	O14686	MLL2_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 2	4423					chromatin silencing|histone H3-K4 methylation|oocyte growth|positive regulation of cell proliferation|positive regulation of estrogen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|response to estrogen stimulus|transcription, DNA-dependent	histone methyltransferase complex	histone-lysine N-methyltransferase activity|protein binding|transcription regulatory region DNA binding|zinc ion binding			kidney(16)|central_nervous_system(12)|lung(4)|skin(4)|ovary(3)|pancreas(2)	41						AGGGCACATGGCTCTTCCCGA	0.622			N|F|Mis		medulloblastoma|renal					HNSCC(34;0.089)			14	20					0	0	0.000219431	0	0
AQP5	362	broad.mit.edu	37	12	50355884	50355885	+	Silent	DNP	CC	TT	TT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:50355884_50355885CC>TT	uc001rvo.2	+	1	606_607	c.84_85CC>TT	c.(82-87)GGCCTG>GGTTTG	p.28_29GL>GL		NM_001651	NP_001642	P55064	AQP5_HUMAN	aquaporin 5	28_29	Helical; (Potential).				carbon dioxide transport|excretion|odontogenesis|pancreatic juice secretion	apical plasma membrane|integral to plasma membrane	protein binding|water channel activity				0						TCTTCTTTGGCCTGGGCTCGGC	0.589													12	22					0	0	6.4e-05	0	0
KRT2	3849	broad.mit.edu	37	12	53045889	53045889	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:53045889C>T	uc001sat.2	-	1	71	c.38G>A	c.(37-39)GGA>GAA	p.G13E		NM_000423	NP_000414	P35908	K22E_HUMAN	keratin 2	13	Head.				keratinization|keratinocyte activation|keratinocyte migration|keratinocyte proliferation	Golgi apparatus|keratin filament	protein binding|structural constituent of cytoskeleton			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.19)		tccacctcctcctcttcctcG	0.473													3	8					0	0	0.00024832	0	0
OR10A7	121364	broad.mit.edu	37	12	55615394	55615394	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:55615394G>A	uc010spf.1	+	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001005280	NP_001005280	Q8NGE5	O10A7_HUMAN	olfactory receptor, family 10, subfamily A,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)	4						AACCATGTATGAAATGCAAGC	0.443													15	22					0	0	0.000308642	0	0
OS9	10956	broad.mit.edu	37	12	58114030	58114030	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:58114030G>A	uc001spj.2	+	13	1808	c.1749G>A	c.(1747-1749)GAG>GAA	p.E583E	OS9_uc010srx.1_Intron|OS9_uc001spk.2_Silent_p.E568E|OS9_uc001spl.2_Intron|OS9_uc001spm.2_Intron|OS9_uc001spn.2_Intron|OS9_uc010sry.1_Intron|OS9_uc010srz.1_Intron	NM_006812	NP_006803	Q13438	OS9_HUMAN	osteosarcoma amplified 9, endoplasmic reticulum	583					ER-associated protein catabolic process|protein retention in ER lumen|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to endoplasmic reticulum stress	endoplasmic reticulum lumen|Hrd1p ubiquitin ligase complex	glycoprotein binding|protein binding|sugar binding			ovary(1)	1	all_neural(12;0.00548)|Glioma(12;0.0126)|Melanoma(17;0.122)		BRCA - Breast invasive adenocarcinoma(9;0.109)			TGGAGAGGGAGGGACTCACAG	0.632													18	30					0	0	0.000132079	0	0
USP44	84101	broad.mit.edu	37	12	95927253	95927253	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:95927253G>A	uc001teg.2	-	2	924	c.780C>T	c.(778-780)TCC>TCT	p.S260S	USP44_uc001teh.2_Silent_p.S260S|USP44_uc009zte.2_Silent_p.S257S	NM_001042403	NP_001035862	Q9H0E7	UBP44_HUMAN	ubiquitin thiolesterase 44	260					anaphase|cell division|mitosis|negative regulation of mitotic anaphase-promoting complex activity|protein deubiquitination|regulation of spindle checkpoint|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)|breast(1)|central_nervous_system(1)	3						GTTTAACTGAGGAGTCACTGA	0.393													26	72					0	0	0.000279167	0	0
CCDC38	120935	broad.mit.edu	37	12	96311013	96311013	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:96311013C>T	uc001tek.1	-	4	432	c.198G>A	c.(196-198)ATG>ATA	p.M66I		NM_182496	NP_872302	Q502W7	CCD38_HUMAN	coiled-coil domain containing 38	66										skin(1)	1						AATGACTCTTCATTCTGGATG	0.378													15	22					0	0	0.000308642	0	0
NUP37	79023	broad.mit.edu	37	12	102468181	102468181	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:102468181C>G	uc001tjc.2	-	9	997	c.932G>C	c.(931-933)TGT>TCT	p.C311S		NM_024057	NP_076962	Q8NFH4	NUP37_HUMAN	nucleoporin 37kDa	311	WD 4.				carbohydrate metabolic process|cell division|chromosome segregation|glucose transport|mitotic prometaphase|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytosol|Nup107-160 complex	protein binding			ovary(1)	1						TCCAATTACACACAGAGGGAG	0.393													3	19					0	0	6.4e-05	0	0
KSR2	283455	broad.mit.edu	37	12	118293345	118293345	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:118293345C>T	uc001two.2	-	3	328	c.273G>A	c.(271-273)TTG>TTA	p.L91L		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	120					intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CCGTCATCTCCAAGAGGTCCT	0.607													24	23					0	0	0.00047179	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123645368	123645368	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:123645368G>A	uc001uel.2	-	19	3061	c.2954C>T	c.(2953-2955)TCT>TTT	p.S985F	MPHOSPH9_uc010tal.1_Missense_Mutation_p.S439F|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Missense_Mutation_p.S439F	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	985	Potential.				M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		TCCTCCAGGAGAAGGCATCCT	0.403													11	29					0	0	0.00010058	0	0
DNAH10	196385	broad.mit.edu	37	12	124330680	124330680	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:124330680G>A	uc001uft.3	+	31	5464	c.5439G>A	c.(5437-5439)CGG>CGA	p.R1813R		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	1813	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TCACCGATCGGATTTACCTGA	0.582													7	23					0	0	0.000157383	0	0
LOC284232	284232	broad.mit.edu	37	13	19409605	19409605	+	RNA	SNP	C	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr13:19409605C>A	uc010tcj.1	-	1		c.36505G>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						TTTTTCTCTTCTAGCATGAGG	0.318													12	22					2.27111e-07	2.28434e-06	0.00010058	1	0
NBEA	26960	broad.mit.edu	37	13	35733681	35733681	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr13:35733681G>A	uc001uvb.2	+	23	3579	c.3373G>A	c.(3373-3375)GAT>AAT	p.D1125N	NBEA_uc010abi.2_5'Flank	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1125						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TGAAGAAAAGGATAATGGTCC	0.343													10	6					0	0	0.000978159	0	0
UFM1	51569	broad.mit.edu	37	13	38924147	38924147	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr13:38924147C>T	uc001uwu.2	+	2	129	c.14C>T	c.(13-15)TCC>TTC	p.S5F	UFM1_uc010abz.2_Missense_Mutation_p.S5F|UFM1_uc010aca.2_Missense_Mutation_p.S5F	NM_016617	NP_057701	P61960	UFM1_HUMAN	ubiquitin-fold modifier 1 precursor	5					protein ufmylation	cytoplasm|nucleus	protein binding				0		Lung NSC(96;3.18e-06)|Prostate(109;0.00314)|Breast(139;0.0199)|Lung SC(185;0.0743)		all cancers(112;1.05e-08)|Epithelial(112;1.44e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000855)|BRCA - Breast invasive adenocarcinoma(63;0.00342)|GBM - Glioblastoma multiforme(144;0.0132)		TCGAAGGTTTCCTTTAAGATC	0.582													31	26					0	0	0.000409698	0	0
DACH1	1602	broad.mit.edu	37	13	72440119	72440119	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr13:72440119C>T	uc010thn.1	-	2	1206	c.783G>A	c.(781-783)GTG>GTA	p.V261V	DACH1_uc010tho.1_Silent_p.V261V|DACH1_uc010thp.1_Silent_p.V261V	NM_080759	NP_542937	Q9UI36	DACH1_HUMAN	dachshund homolog 1 isoform a	261	Interaction with SIX6 and HDAC3 (By similarity).|DACHbox-N.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding|nucleotide binding|protein binding			breast(1)	1		Acute lymphoblastic leukemia(28;0.0503)|Breast(118;0.198)		GBM - Glioblastoma multiforme(99;0.00032)		TGCAGCGGTTCACTCCTGGCT	0.622													17	10					0	0	0.000175454	0	0
RBM26	64062	broad.mit.edu	37	13	79929422	79929422	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr13:79929422T>A	uc001vkz.2	-	12	1816	c.1802A>T	c.(1801-1803)AAT>ATT	p.N601I	RBM26_uc001vky.2_Missense_Mutation_p.N596I|RBM26_uc001vla.2_Missense_Mutation_p.N596I|RBM26_uc010tia.1_5'Flank|RBM26_uc001vkx.2_Missense_Mutation_p.N308I	NM_022118	NP_071401	Q5T8P6	RBM26_HUMAN	RNA binding motif protein 26	596	RRM 1.				mRNA processing		nucleotide binding|protein binding|RNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(28;0.0279)		GBM - Glioblastoma multiforme(99;0.0188)		AATAAAGCGATTGTTTAATAC	0.388													17	19					0	0	0.000175454	0	0
COL4A2	1284	broad.mit.edu	37	13	111142066	111142067	+	Nonsense_Mutation	DNP	GG	TA	TA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr13:111142066_111142067GG>TA	uc001vqx.2	+	36	3569_3570	c.3280_3281GG>TA	c.(3280-3282)GGG>TAG	p.G1094*		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	1094	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			AGGTGACATCGGGGACACTATA	0.441													54	29					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	14	22180877	22180877	+	RNA	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:22180877C>T	uc010tme.1	+	3		c.196C>T			uc001wbm.2_Missense_Mutation_p.S50F					Homo sapiens mRNA for T cell receptor alpha variable 2, partial cds, clone: SEB 280.																		TGTAATCACTCTGTGTCCAAT	0.468													109	57					0	0	0.000781405	0	0
TINF2	26277	broad.mit.edu	37	14	24711504	24711504	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:24711504A>T	uc001woa.3	-	1	377	c.35T>A	c.(34-36)CTA>CAA	p.L12Q	TINF2_uc010alm.2_5'Flank|TINF2_uc001wob.3_Missense_Mutation_p.L12Q|TINF2_uc010tof.1_Missense_Mutation_p.L12Q|TINF2_uc001woc.3_Missense_Mutation_p.L12Q	NM_001099274	NP_001092744	Q9BSI4	TINF2_HUMAN	TERF1 (TRF1)-interacting nuclear factor 2	12					negative regulation of epithelial cell proliferation|negative regulation of protein ADP-ribosylation|negative regulation of telomere maintenance via telomerase|positive regulation of telomere maintenance|protein localization to chromosome, telomeric region|telomere assembly|telomere maintenance via telomere lengthening	nuclear telomere cap complex|nucleoplasm|perinucleolar chromocenter	protein binding|protein binding|telomeric DNA binding				0				GBM - Glioblastoma multiforme(265;0.0185)		GGCGAAGCGTAGAGCTGCGGG	0.687									Ataxia_Pancytopenia_syndrome|Congenital_Dyskeratosis		OREG0022621	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	33					0	0	0.000157383	0	0
C14orf21	161424	broad.mit.edu	37	14	24771298	24771298	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:24771298C>T	uc001wol.1	+	4	999	c.936C>T	c.(934-936)TCC>TCT	p.S312S	C14orf21_uc001wom.1_5'Flank|DHRS1_uc001woj.1_5'Flank|DHRS1_uc001wok.2_5'Flank	NM_174913	NP_777573	Q86U38	CN021_HUMAN	hypothetical protein LOC161424	312							RNA binding			breast(2)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(265;0.0185)		CTCGCGGTTCCTCAGTAGATG	0.498													58	38					0	0	0.000781405	0	0
SCFD1	23256	broad.mit.edu	37	14	31204066	31204066	+	Splice_Site	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:31204066T>C	uc001wqm.1	+	24	1929	c.1905_splice	c.e24+2	p.Q635_splice	SCFD1_uc001wqn.1_Splice_Site_p.Q568_splice|SCFD1_uc010tpg.1_Splice_Site_p.Q576_splice|SCFD1_uc010tph.1_Splice_Site_p.Q450_splice|SCFD1_uc010amf.1_Splice_Site_p.Q450_splice|SCFD1_uc010tpi.1_Splice_Site_p.Q543_splice	NM_016106	NP_057190	Q8WVM8	SCFD1_HUMAN	vesicle transport-related protein isoform a						post-Golgi vesicle-mediated transport|protein transport|regulation of ER to Golgi vesicle-mediated transport|response to toxin|retrograde vesicle-mediated transport, Golgi to ER|vesicle docking involved in exocytosis	cis-Golgi network|endoplasmic reticulum membrane|Golgi cisterna membrane|Golgi-associated vesicle|plasma membrane	syntaxin-5 binding				0	Hepatocellular(127;0.0877)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.0119)	GBM - Glioblastoma multiforme(265;0.0181)		ATAAAACAGGTAAAGTATACA	0.358													36	24					0	0	0.00058488	0	0
AKAP6	9472	broad.mit.edu	37	14	33292161	33292161	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:33292161G>A	uc001wrq.2	+	13	5312	c.5142G>A	c.(5140-5142)TCG>TCA	p.S1714S		NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	1714					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TCCCGGAATCGAATGCATCGT	0.468													42	22					0	0	0.000781405	0	0
PELI2	57161	broad.mit.edu	37	14	56755313	56755313	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:56755313C>T	uc001xch.2	+	4	754	c.468C>T	c.(466-468)TTC>TTT	p.F156F		NM_021255	NP_067078	Q9HAT8	PELI2_HUMAN	pellino 2	156					innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of MAPKKK cascade|positive regulation of protein phosphorylation|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol	protein binding			ovary(1)	1						CACGGATATTCGCCGCCGGAT	0.458													5	21					0	0	0.000602214	0	0
ZFYVE1	53349	broad.mit.edu	37	14	73490749	73490749	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:73490749T>G	uc001xnm.2	-	2	1108	c.468A>C	c.(466-468)GAA>GAC	p.E156D	ZFYVE1_uc010arj.2_Missense_Mutation_p.E156D	NM_021260	NP_067083	Q9HBF4	ZFYV1_HUMAN	zinc finger, FYVE domain containing 1 isoform 1	156						endoplasmic reticulum|Golgi stack|perinuclear region of cytoplasm	1-phosphatidylinositol binding|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|zinc ion binding			skin(1)	1		all_lung(585;1.33e-09)		OV - Ovarian serous cystadenocarcinoma(108;1.6e-46)|BRCA - Breast invasive adenocarcinoma(234;0.00349)		TTTCTTCATTTTCGTCTACTA	0.453													5	226					0	0	0.000602214	0	0
SLC24A4	123041	broad.mit.edu	37	14	92911661	92911661	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:92911661T>C	uc001yak.2	+	8	631	c.607T>C	c.(607-609)TTC>CTC	p.F203L	SLC24A4_uc001yai.2_Missense_Mutation_p.F156L|SLC24A4_uc010twm.1_Missense_Mutation_p.F220L|SLC24A4_uc001yaj.2_Missense_Mutation_p.F203L|SLC24A4_uc010auj.2_Missense_Mutation_p.F111L|SLC24A4_uc010twn.1_5'UTR	NM_153646	NP_705932	Q8NFF2	NCKX4_HUMAN	solute carrier family 24 member 4 isoform 1	220	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			breast(2)|ovary(1)	3		all_cancers(154;0.0347)|all_epithelial(191;0.163)		Colorectal(1;0.00242)|COAD - Colon adenocarcinoma(157;0.047)|Epithelial(152;0.0781)|READ - Rectum adenocarcinoma(1;0.176)|all cancers(159;0.182)		TGCCTTACAGTTCATATATGA	0.388													35	96					0	0	0.000319135	0	0
FAM181A	90050	broad.mit.edu	37	14	94395003	94395003	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr14:94395003G>A	uc001ybz.1	+	3	865	c.558G>A	c.(556-558)CAG>CAA	p.Q186Q	C14orf86_uc001yby.2_5'Flank|FAM181A_uc010aus.1_Silent_p.Q124Q|FAM181A_uc001yca.1_Silent_p.Q124Q	NM_138344	NP_612353	Q8N9Y4	F181A_HUMAN	hypothetical protein LOC90050	186											0						AAGCTGCCCAGCCTGGCCAGG	0.632													20	13					0	0	0.000175454	0	0
OTUD7A	161725	broad.mit.edu	37	15	31793901	31793901	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:31793901C>T	uc001zfq.2	-	8	1235	c.1142G>A	c.(1141-1143)AGA>AAA	p.R381K	OTUD7A_uc001zfr.2_Missense_Mutation_p.R388K	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	381	Catalytic (By similarity).|TRAF-binding (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		ACCTTGTTCTCTTTGCTGGTC	0.577													11	50					0	0	0.00010058	0	0
RHOV	171177	broad.mit.edu	37	15	41165488	41165488	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:41165488C>T	uc001znd.2	-	3	629	c.479G>A	c.(478-480)GGG>GAG	p.G160E		NM_133639	NP_598378	Q96L33	RHOV_HUMAN	ras homolog gene family, member V	160					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome membrane|plasma membrane	GTP binding|metal ion binding				0		all_cancers(109;1.42e-13)|all_epithelial(112;1.48e-11)|Lung NSC(122;5.77e-09)|all_lung(180;1.08e-07)|Melanoma(134;0.091)|Colorectal(260;0.175)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;2.58e-05)|COAD - Colon adenocarcinoma(120;0.149)|BRCA - Breast invasive adenocarcinoma(123;0.163)		CTCCCGGCCCCCCTGGTCCAG	0.662													18	66					0	0	0.000132079	0	0
RPAP1	26015	broad.mit.edu	37	15	41826993	41826993	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:41826993G>A	uc001zod.2	-	6	806	c.682C>T	c.(682-684)CAT>TAT	p.H228Y		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	228						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		TTCTCTTCATGGATAGTCTGG	0.582													15	26					0	0	0.000308642	0	0
SPTBN5	51332	broad.mit.edu	37	15	42160315	42160315	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:42160315G>A	uc001zos.2	-	34	6387	c.6054C>T	c.(6052-6054)CTC>CTT	p.L2018L	hsa-mir-4310|MI0015840_5'Flank	NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	2053	Spectrin 17.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		CTCTGAGGAAGAGCTGCTCCT	0.662													3	8					0	0	6.4e-05	0	0
PDIA3	2923	broad.mit.edu	37	15	44053692	44053692	+	Silent	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:44053692T>C	uc001zsu.2	+	4	583	c.435T>C	c.(433-435)TTT>TTC	p.F145F	PDIA3_uc010bdp.2_Silent_p.F125F|PDIA3_uc010ued.1_5'UTR	NM_005313	NP_005304	P30101	PDIA3_HUMAN	protein disulfide-isomerase A3 precursor	145					cell redox homeostasis|glycerol ether metabolic process|post-translational protein modification|protein folding|protein import into nucleus|protein N-linked glycosylation via asparagine|protein retention in ER lumen|signal transduction	endoplasmic reticulum lumen|melanosome	cysteine-type endopeptidase activity|electron carrier activity|phospholipase C activity|protein binding|protein disulfide isomerase activity|protein disulfide oxidoreductase activity			ovary(1)|skin(1)	2		all_cancers(109;2.61e-15)|all_epithelial(112;1.12e-12)|Lung NSC(122;2.17e-08)|all_lung(180;2.45e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.48e-07)		AGGAAGAATTTAAGAAATTCA	0.393													19	65					0	0	0.000175454	0	0
DUOXA1	90527	broad.mit.edu	37	15	45413409	45413409	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:45413409G>A	uc001zuq.1	-	3	245	c.216C>T	c.(214-216)TTC>TTT	p.F72F	DUOXA1_uc010uem.1_Intron|DUOXA1_uc001zup.2_Silent_p.F72F|DUOXA1_uc010bec.2_Silent_p.F72F|DUOXA1_uc001zur.1_Intron|DUOXA1_uc010bed.1_Intron	NM_144565	NP_653166	Q1HG43	DOXA1_HUMAN	Numb-interacting protein	72	Helical; (Potential).				protein transport	endoplasmic reticulum membrane|integral to membrane				ovary(1)	1		all_cancers(109;6.02e-08)|all_epithelial(112;1.83e-06)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.82e-18)|GBM - Glioblastoma multiforme(94;4.39e-07)|COAD - Colon adenocarcinoma(120;0.0676)|Colorectal(133;0.0686)		ACTCAGAACTGAAATTCACAG	0.478													12	23					0	0	0.000151284	0	0
RFX7	64864	broad.mit.edu	37	15	56386859	56386859	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:56386859G>A	uc010bfn.2	-	9	3067	c.3067C>T	c.(3067-3069)CCG>TCG	p.P1023S	RFX7_uc010ugk.1_RNA|RFX7_uc002adn.1_Missense_Mutation_p.P837S	NM_022841	NP_073752	Q2KHR2	RFX7_HUMAN	regulatory factor X domain containing 2	926					regulation of transcription, DNA-dependent	nucleus	DNA binding				0						AATGCAAACGGATTCCTGCAT	0.493													13	19					0	0	0.00010058	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58302877	58302877	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:58302877C>A	uc002aex.2	-	4	521	c.463G>T	c.(463-465)GAT>TAT	p.D155Y	ALDH1A2_uc002aey.2_Missense_Mutation_p.D155Y|ALDH1A2_uc010ugv.1_Missense_Mutation_p.D134Y|ALDH1A2_uc010ugw.1_Missense_Mutation_p.D126Y|ALDH1A2_uc002aew.2_Missense_Mutation_p.D59Y	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	155					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	TGAATTTTATCAGCCCAGCCT	0.443													14	51					2.61681e-11	2.65136e-10	0.000219431	1	0
SLTM	79811	broad.mit.edu	37	15	59192026	59192026	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:59192026T>G	uc002afp.2	-	7	788	c.700A>C	c.(700-702)ACT>CCT	p.T234P	SLTM_uc002afo.2_Missense_Mutation_p.T216P|SLTM_uc002afq.2_Intron|SLTM_uc010bgd.2_Intron|SLTM_uc002afr.1_Missense_Mutation_p.T133P	NM_024755	NP_079031	Q9NWH9	SLTM_HUMAN	modulator of estrogen induced transcription	234	Glu-rich.				apoptosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)	1						TCTTTCACAGTCGTATGAGCT	0.463													65	43					0	0	0.000781405	0	0
Unknown	0	broad.mit.edu	37	15	62539289	62539289	+	RNA	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:62539289C>T	uc002ain.1	-	4		c.301G>A			uc002ajj.1_Missense_Mutation_p.R128K|uc010uhp.1_RNA|uc002ajt.2_5'Flank|uc002ajw.2_5'Flank|uc010uhq.1_5'Flank|uc002ajx.2_5'Flank|uc002ajy.2_5'Flank					Homo sapiens cDNA FLJ38723 fis, clone KIDNE2010137, weakly similar to GOLGIN-95.																		GCTGTGCACTCTCTCCTCCCT	0.612													7	11					0	0	0.000157383	0	0
PIF1	80119	broad.mit.edu	37	15	65108888	65108888	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:65108888C>G	uc002ant.2	-	12	1817	c.1751G>C	c.(1750-1752)CGG>CCG	p.R584P	PIF1_uc002anr.2_Missense_Mutation_p.R132P|PIF1_uc002ans.2_Missense_Mutation_p.R275P|PIF1_uc010uiq.1_Missense_Mutation_p.R584P	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	584	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						GCTGCGGGCCCGAGAAAGGGC	0.642													13	56					0	0	0.000151284	0	0
IQCH	64799	broad.mit.edu	37	15	67681217	67681217	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:67681217A>C	uc002aqo.1	+	12	1552	c.1505A>C	c.(1504-1506)GAG>GCG	p.E502A	IQCH_uc002aqq.1_Missense_Mutation_p.E250A|IQCH_uc002aqp.1_Missense_Mutation_p.E254A	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	502										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		ATGAATGACGAGTTAGTGCTG	0.393													26	53					0	0	0.000586117	0	0
MYO9A	4649	broad.mit.edu	37	15	72192092	72192092	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:72192092G>A	uc002atl.3	-	24	3879	c.3406C>T	c.(3406-3408)CAA>TAA	p.Q1136*	MYO9A_uc010biq.2_Nonsense_Mutation_p.Q756*|MYO9A_uc002atn.1_Nonsense_Mutation_p.Q1117*|MYO9A_uc002atk.2_5'Flank|MYO9A_uc002atm.1_5'Flank	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	1136	IQ 4.|Neck or regulatory domain.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						CTTTGTTCTTGGTACCTTTTA	0.353													28	36					0	0	0.000279167	0	0
PML	5371	broad.mit.edu	37	15	74290560	74290560	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:74290560C>T	uc002awv.2	+	2	485	c.345C>T	c.(343-345)CGC>CGT	p.R115R	PML_uc002awm.2_Silent_p.R115R|PML_uc002awl.2_Silent_p.R115R|PML_uc002awj.1_Silent_p.R115R|PML_uc002awk.2_Silent_p.R115R|PML_uc002awn.2_Silent_p.R115R|PML_uc002awo.2_Silent_p.R115R|PML_uc002awp.2_Silent_p.R115R|PML_uc002awq.2_Silent_p.R115R|PML_uc002awr.2_Silent_p.R115R|PML_uc002aws.2_Silent_p.R115R|PML_uc002awt.2_Silent_p.R115R|PML_uc002awu.2_Silent_p.R115R|PML_uc010ule.1_Intron|PML_uc002aww.1_Silent_p.R30R	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	115					cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						TGCAGCGGCGCCTGTCGGTGT	0.642			T	RARA|PAX5	APL|ALL								25	24					0	0	0.000586117	0	0
SNUPN	10073	broad.mit.edu	37	15	75890955	75890955	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:75890955C>G	uc002ban.2	-	9	917	c.827G>C	c.(826-828)TGG>TCG	p.W276S	SNUPN_uc002bao.2_Missense_Mutation_p.W276S|SNUPN_uc002bap.2_Missense_Mutation_p.W318S|SNUPN_uc002baq.2_Missense_Mutation_p.W276S|SNUPN_uc002bar.2_Missense_Mutation_p.W276S|SNUPN_uc002bas.2_Missense_Mutation_p.W276S	NM_005701	NP_005692	O95149	SPN1_HUMAN	snurportin 1	276	Necessary for binding to the m3G-cap structure.			W->A: Reduces binding to m3G-cap structure, interaction with XPO1 and snRNP import receptor activity.	ncRNA metabolic process|protein import into nucleus|spliceosomal snRNP assembly	cytosol|nuclear pore	protein transporter activity|RNA cap binding			pancreas(1)	1						GGGGCGCAGCCAGCCCACCAA	0.557													29	199					0	0	0.000227799	0	0
SGK269	79834	broad.mit.edu	37	15	77425888	77425888	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:77425888C>T	uc002bcm.2	-	5	3844	c.3536G>A	c.(3535-3537)AGT>AAT	p.S1179N		NM_024776	NP_079052	Q9H792	PEAK1_HUMAN	NKF3 kinase family member	1179					cell migration|protein autophosphorylation|substrate adhesion-dependent cell spreading	actin cytoskeleton|cytoplasm|focal adhesion	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding				0				STAD - Stomach adenocarcinoma(199;0.124)		GACACAAAGACTACTTTCCAT	0.473													19	126					0	0	0.000958276	0	0
ARNT2	9915	broad.mit.edu	37	15	80873662	80873662	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:80873662C>T	uc002bfr.2	+	17	2001	c.1835C>T	c.(1834-1836)TCC>TTC	p.S612F	ARNT2_uc010unm.1_Missense_Mutation_p.S601F|ARNT2_uc002bfs.2_Missense_Mutation_p.S601F	NM_014862	NP_055677	Q9HBZ2	ARNT2_HUMAN	aryl hydrocarbon receptor nuclear translocator	612					central nervous system development|in utero embryonic development|response to hypoxia		aryl hydrocarbon receptor binding|DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(3)|ovary(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.134)			GACCCCTCTTCCTACAGCCCC	0.572													38	27					0	0	0.000228196	0	0
SELS	55829	broad.mit.edu	37	15	101814677	101814677	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:101814677G>A	uc010use.1	-	5	510	c.432C>T	c.(430-432)TCC>TCT	p.S144S	SELS_uc010usf.1_Silent_p.S144S	NM_203472	NP_982298	Q9BQE4	SELS_HUMAN	selenoprotein S	144					anti-apoptosis|cell redox homeostasis|cellular response to insulin stimulus|cellular response to lipopolysaccharide|cellular response to oxidative stress|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|negative regulation of acute inflammatory response to antigenic stimulus|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of interleukin-6 production|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of tumor necrosis factor production|regulation of gluconeogenesis|regulation of nitric oxide metabolic process|response to glucose stimulus|response to redox state|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane|low-density lipoprotein particle|microsome|plasma membrane|very-low-density lipoprotein particle	antioxidant activity|enzyme binding|receptor activity|selenium binding				0	Lung NSC(78;0.00156)|all_lung(78;0.00195)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00113)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CAGATGAAGTGGAAGGCCCAG	0.458													8	6					0	0	0.000274275	0	0
RAB11FIP3	9727	broad.mit.edu	37	16	476580	476580	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:476580C>T	uc002chf.2	+	1	913	c.574C>T	c.(574-576)CCC>TCC	p.P192S		NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	192	Pro-rich.				cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				CCAGACCCACCCCCTTCCGAG	0.731													4	15					0	0	0.000602214	0	0
ZNF213	7760	broad.mit.edu	37	16	3187371	3187371	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:3187371G>A	uc010uws.1	+	2	537	c.90G>A	c.(88-90)CAG>CAA	p.Q30Q	ZNF213_uc002cud.2_RNA|ZNF213_uc010btf.2_Silent_p.Q30Q|ZNF213_uc010bth.2_Silent_p.Q30Q|ZNF213_uc010uwt.1_Silent_p.Q30Q	NM_004220	NP_004211	O14771	ZN213_HUMAN	zinc finger protein 213	30					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CCTGGGAACAGGAATCTGCCC	0.617													31	33					0	0	0.000227799	0	0
ZNF434	54925	broad.mit.edu	37	16	3432960	3432960	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:3432960C>G	uc002cuz.2	-	6	2152	c.1350G>C	c.(1348-1350)AGG>AGC	p.R450S	ZNF434_uc002cux.3_Missense_Mutation_p.R661S|ZNF434_uc010uwx.1_Missense_Mutation_p.R373S|ZNF434_uc002cuy.3_Missense_Mutation_p.R373S	NM_017810	NP_060280	Q9NX65	ZN434_HUMAN	zinc finger protein 434	450	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						AGTGAGAACACCTGTAAGGCT	0.493													16	49					0	0	0.000308642	0	0
C16orf68	79091	broad.mit.edu	37	16	8729067	8729067	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:8729067C>T	uc002cyz.2	+	5	874	c.598C>T	c.(598-600)CGA>TGA	p.R200*	C16orf68_uc002cza.2_Nonsense_Mutation_p.R144*	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	200							methyltransferase activity				0						CATCCTGTTCCGACAGGACCT	0.637													27	29					0	0	0.000720815	0	0
TMC5	79838	broad.mit.edu	37	16	19455460	19455460	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:19455460C>T	uc002dgc.3	+	4	1595	c.846C>T	c.(844-846)CCC>CCT	p.P282P	TMC5_uc010vaq.1_Silent_p.P282P|TMC5_uc002dgb.3_Silent_p.P282P|TMC5_uc010var.1_Silent_p.P282P	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	282	Extracellular (Potential).					integral to membrane				skin(1)	1						GTGATGACCCCGTGGGCAGTC	0.488													43	45					0	0	0.000589545	0	0
SETD1A	9739	broad.mit.edu	37	16	30977592	30977592	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:30977592T>A	uc002ead.1	+	8	3076	c.2390T>A	c.(2389-2391)ATG>AAG	p.M797K		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	797					regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						GTGCTCGCCATGCTGGTCCAG	0.637													5	19					0	0	3.59834e-05	0	0
C16orf58	64755	broad.mit.edu	37	16	31503655	31503655	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:31503655A>G	uc002eci.1	-	11	1106	c.1094T>C	c.(1093-1095)GTA>GCA	p.V365A	C16orf58_uc002ecg.2_5'Flank|C16orf58_uc002ech.1_Missense_Mutation_p.V103A	NM_022744	NP_073581	Q96GQ5	CP058_HUMAN	hypothetical protein LOC64755	365						integral to membrane				ovary(1)|breast(1)	2						AACTACCTGTACCTGGTCTGG	0.607													15	12					0	0	0.000219431	0	0
ABCC11	85320	broad.mit.edu	37	16	48227838	48227838	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:48227838C>T	uc002eff.1	-	18	2810	c.2460G>A	c.(2458-2460)ACG>ACA	p.T820T	ABCC11_uc002efg.1_Silent_p.T820T|ABCC11_uc002efh.1_Silent_p.T820T|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	820	ABC transmembrane type-1 2.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				AGCTGAAGATCGTTAAGAAGA	0.527									Cerumen_Type				32	8					0	0	0.000953801	0	0
ZFP90	146198	broad.mit.edu	37	16	68597607	68597607	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:68597607G>A	uc010cff.2	+	5	1209	c.917G>A	c.(916-918)GGA>GAA	p.G306E	ZFP90_uc002ewb.2_Missense_Mutation_p.E112K|ZFP90_uc002ewc.2_Missense_Mutation_p.E112K|ZFP90_uc002ewd.2_Missense_Mutation_p.G306E|ZFP90_uc002ewe.2_Missense_Mutation_p.G306E	NM_133458	NP_597715	Q8TF47	ZFP90_HUMAN	zinc finger protein 90	306					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00233)|Epithelial(162;0.0184)|all cancers(182;0.0946)		GCTCATACCGGAGAGAAACCC	0.493													15	20					0	0	0.000132079	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													3	11					0	0	6.4e-05	0	0
VPS53	55275	broad.mit.edu	37	17	440338	440338	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:440338C>T	uc002frn.2	-	18	2092	c.1945G>A	c.(1945-1947)GTC>ATC	p.V649I	VPS53_uc002frk.2_Missense_Mutation_p.V168I|VPS53_uc010cjo.1_Missense_Mutation_p.V649I|VPS53_uc002frl.2_RNA|VPS53_uc002frm.2_Missense_Mutation_p.V620I|VPS53_uc002fro.2_Missense_Mutation_p.V451I|VPS53_uc010cjp.1_Missense_Mutation_p.V372I	NM_018289	NP_060759	Q5VIR6	VPS53_HUMAN	vacuolar protein sorting 53 isoform 2	649					protein transport	endosome membrane|Golgi apparatus					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0265)		ATGATGGGGACGTTCTGCTTG	0.527													13	12					0	0	0.000219431	0	0
KIF1C	10749	broad.mit.edu	37	17	4923933	4923933	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:4923933G>A	uc002gan.1	+	20	2223	c.1897G>A	c.(1897-1899)GAG>AAG	p.E633K		NM_006612	NP_006603	O43896	KIF1C_HUMAN	kinesin family member 1C	633	Potential.				microtubule-based movement|retrograde vesicle-mediated transport, Golgi to ER	endoplasmic reticulum|Golgi apparatus|microtubule	ATP binding|microtubule motor activity			breast(2)	2						GGAACTGCTGGAGCAGCAAGG	0.652													22	8					0	0	0.000229342	0	0
MFSD6L	162387	broad.mit.edu	37	17	8702360	8702360	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:8702360C>T	uc002glp.1	-	1	227	c.79G>A	c.(79-81)GAA>AAA	p.E27K		NM_152599	NP_689812	Q8IWD5	MFS6L_HUMAN	major facilitator superfamily domain containing	27						integral to membrane				central_nervous_system(1)	1						ACGCAGGCTTCCCGCACCCCG	0.677													14	5					0	0	0.000566183	0	0
RNF112	7732	broad.mit.edu	37	17	19315925	19315926	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:19315925_19315926GG>AT	uc010vyw.1	+	3	409_410	c.210_211GG>AT	c.(208-213)CTGGAC>CTATAC	p.D71Y	RNF112_uc010vyu.1_Missense_Mutation_p.D71Y|RNF112_uc010vyv.1_Missense_Mutation_p.D71Y|RNF112_uc010vyx.1_Missense_Mutation_p.D23Y	NM_007148	NP_009079	Q7Z5V9	Q7Z5V9_HUMAN	ring finger protein 112	71							GTP binding|GTPase activity|zinc ion binding			ovary(2)	2						CCATCTCGCTGGACTGTGGCCA	0.649													12	4					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	17	20805809	20805809	+	RNA	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:20805809C>T	uc002gyg.1	+	4		c.993C>T			uc002gyh.1_RNA					Homo sapiens cDNA FLJ32911 fis, clone TESTI2006210.																		TGTTGATTTTCCTGCCCTTCT	0.512													22	7					0	0	0.000295444	0	0
VTN	7448	broad.mit.edu	37	17	26696733	26696734	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:26696733_26696734CC>TT	uc002hbc.2	-	3	472_473	c.323_324GG>AA	c.(322-324)GGG>GAA	p.G108E	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	108					cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	GCTCAGGATTCCCTTTGGACTG	0.594													19	14					0	0	6.4e-05	0	0
KRT12	3859	broad.mit.edu	37	17	39019850	39019850	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:39019850G>A	uc002hvk.2	-	5	1006	c.982C>T	c.(982-984)CGT>TGT	p.R328C		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	328	Rod.|Coil 2.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				ATCTCCTTACGGAGCTCCCCG	0.567													17	49					0	0	0.000422831	0	0
KRTAP4-8	728224	broad.mit.edu	37	17	39253944	39253944	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:39253944G>A	uc010wfo.1	-	1	432	c.393C>T	c.(391-393)ATC>ATT	p.I131I		NM_031960	NP_114166	Q9BYQ9	KRA48_HUMAN	keratin associated protein 4.8	131	25 X 5 AA repeats of C-C-[IKRQVHEC]- [SPRT]-[STCVQPR].					keratin filament					0						agcagctggagatgctgcagc	0.134													13	1					0	0	0.000151284	0	0
GRN	2896	broad.mit.edu	37	17	42429791	42429791	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:42429791T>G	uc002igp.1	+	12	1715	c.1496T>G	c.(1495-1497)GTG>GGG	p.V499G	GRN_uc002igr.1_Missense_Mutation_p.V293G	NM_002087	NP_002078	P28799	GRN_HUMAN	granulin precursor	499					signal transduction	extracellular space	cytokine activity|growth factor activity			ovary(2)|central_nervous_system(2)|skin(1)	5		Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.189)		GAGAAGGAAGTGGTCTCTGCC	0.632													7	49					0	0	0.000442599	0	0
PDK2	5164	broad.mit.edu	37	17	48184467	48184467	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:48184467G>A	uc002iqc.2	+	6	739	c.635G>A	c.(634-636)TGT>TAT	p.C212Y	PDK2_uc002iqb.2_Missense_Mutation_p.C148Y	NM_002611	NP_002602	Q15119	PDK2_HUMAN	pyruvate dehydrogenase kinase 2 precursor	212	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix|nucleus	ATP binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			central_nervous_system(3)	3						AAGCTCCTGTGTGACAAGTAT	0.567									Autosomal_Dominant_Polycystic_Kidney_Disease				11	75					0	0	0.000151284	0	0
CACNA1G	8913	broad.mit.edu	37	17	48669190	48669190	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:48669190C>T	uc002irk.1	+	12	3102	c.2730C>T	c.(2728-2730)CTC>CTT	p.L910L	CACNA1G_uc002iri.1_Silent_p.L910L|CACNA1G_uc002irj.1_Silent_p.L910L|CACNA1G_uc002irl.1_Silent_p.L910L|CACNA1G_uc002irm.1_Silent_p.L910L|CACNA1G_uc002irn.1_Silent_p.L910L|CACNA1G_uc002iro.1_Silent_p.L910L|CACNA1G_uc002irp.1_Silent_p.L910L|CACNA1G_uc002irq.1_Silent_p.L910L|CACNA1G_uc002irr.1_Silent_p.L910L|CACNA1G_uc002irs.1_Silent_p.L910L|CACNA1G_uc002irt.1_Silent_p.L910L|CACNA1G_uc002irv.1_Silent_p.L910L|CACNA1G_uc002irw.1_Silent_p.L910L|CACNA1G_uc002iru.1_Silent_p.L910L|CACNA1G_uc002irx.1_Silent_p.L823L|CACNA1G_uc002iry.1_Silent_p.L823L|CACNA1G_uc002irz.1_Silent_p.L823L|CACNA1G_uc002isa.1_Silent_p.L823L|CACNA1G_uc002isb.1_Silent_p.L823L|CACNA1G_uc002isc.1_Silent_p.L823L|CACNA1G_uc002isd.1_Silent_p.L823L|CACNA1G_uc002ise.1_Silent_p.L823L|CACNA1G_uc002isf.1_Silent_p.L823L|CACNA1G_uc002isg.1_Silent_p.L823L|CACNA1G_uc002ish.1_Silent_p.L823L|CACNA1G_uc002isi.1_Silent_p.L823L	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	910	Extracellular (Potential).|II.				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ACTCCTTGCTCTGGGCCATCG	0.597													13	54					0	0	0.000151284	0	0
DDX42	11325	broad.mit.edu	37	17	61889322	61889322	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:61889322A>G	uc002jbu.2	+	15	1686	c.1429A>G	c.(1429-1431)ATT>GTT	p.I477V	DDX42_uc002jbv.2_Missense_Mutation_p.I477V|DDX42_uc002jbw.1_Missense_Mutation_p.I213V|DDX42_uc002jbx.2_Missense_Mutation_p.I213V|DDX42_uc002jby.2_Missense_Mutation_p.I23V	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	477					protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						GATTGTGGAGATTCTCCATTC	0.453													38	368					0	0	0.000953801	0	0
SDK2	54549	broad.mit.edu	37	17	71380034	71380034	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:71380034G>A	uc010dfm.2	-	33	4686	c.4686C>T	c.(4684-4686)GCC>GCT	p.A1562A	SDK2_uc002jjt.3_Silent_p.A721A|SDK2_uc010dfn.2_Silent_p.A1241A	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1562	Extracellular (Potential).|Fibronectin type-III 10.				cell adhesion	integral to membrane				ovary(2)	2						CAGCCCATGTGGCCCCTGGGT	0.602													21	55					0	0	0.000586117	0	0
SDK2	54549	broad.mit.edu	37	17	71386490	71386490	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:71386490C>T	uc010dfm.2	-	29	4128	c.4128G>A	c.(4126-4128)ACG>ACA	p.T1376T	SDK2_uc002jjt.3_Silent_p.T535T|SDK2_uc010dfn.2_Silent_p.T1055T	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1376	Fibronectin type-III 8.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GGGTCTGGGCCGTGATGCGGA	0.682													8	11					0	0	0.000157383	0	0
CD300A	11314	broad.mit.edu	37	17	72477958	72477958	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:72477958G>A	uc002jkv.2	+	6	1081	c.760G>A	c.(760-762)GAA>AAA	p.E254K	CD300A_uc002jkw.2_Missense_Mutation_p.E141K|CD300A_uc010dfr.2_Intron|CD300A_uc010dfs.2_Missense_Mutation_p.E58K	NM_007261	NP_009192	Q9UGN4	CLM8_HUMAN	leukocyte membrane antigen	254	Cytoplasmic (Potential).				cell adhesion	integral to membrane|plasma membrane	receptor activity			ovary(1)|skin(1)	2						GGTGGAGGTGGAATACAGCAC	0.632													12	10					0	0	0.00010058	0	0
ITGB4	3691	broad.mit.edu	37	17	73745079	73745079	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:73745079C>T	uc002jpg.2	+	27	3456	c.3269C>T	c.(3268-3270)GCC>GTC	p.A1090V	ITGB4_uc002jph.2_Missense_Mutation_p.A1090V|ITGB4_uc002jpi.3_Missense_Mutation_p.A1090V|ITGB4_uc002jpj.2_Missense_Mutation_p.A1090V	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1090	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			AAGTTTGGGGCCCACCTGGGC	0.647													15	37					0	0	0.000566183	0	0
DNAH17	8632	broad.mit.edu	37	17	76458971	76458971	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:76458971C>T	uc010dhp.1	-	2	351	c.129G>A	c.(127-129)GAG>GAA	p.E43E	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TCTCCAGCCTCTCGATTTTGG	0.582													22	75					0	0	0.000375601	0	0
CYTH1	9267	broad.mit.edu	37	17	76676303	76676303	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr17:76676303C>T	uc002jvw.2	-	12	1155	c.1084G>A	c.(1084-1086)GAG>AAG	p.E362K	CYTH1_uc010wtv.1_RNA	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	363	PH.				regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						TCCTTCTCCTCGGGCGTCGGA	0.562													19	40					0	0	0.000295444	0	0
EMILIN2	84034	broad.mit.edu	37	18	2892139	2892139	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr18:2892139G>A	uc002kln.2	+	4	2173	c.2014G>A	c.(2014-2016)GAG>AAG	p.E672K		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	672					cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		TCAGCTGGAGGAGAGGTGGCA	0.612													20	56					0	0	0.000175454	0	0
TXNDC2	84203	broad.mit.edu	37	18	9886915	9886915	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr18:9886915A>G	uc002koi.3	+	2	888	c.439A>G	c.(439-441)AGT>GGT	p.S147G	TXNDC2_uc010wzq.1_RNA|TXNDC2_uc002koh.3_Missense_Mutation_p.S80G	NM_001098529	NP_001091999	Q86VQ3	TXND2_HUMAN	thioredoxin domain-containing 2 isoform 2	147	3.|22 X 15 AA approximate tandem repeat of Q-P-K-X-G-D-I-P-K-S-[PS]-E-[KE]-X-I.				cell differentiation|cell redox homeostasis|glycerol ether metabolic process|multicellular organismal development|spermatogenesis	cytoplasm	electron carrier activity|nutrient reservoir activity|protein disulfide oxidoreductase activity|thioredoxin-disulfide reductase activity			ovary(1)|pancreas(1)	2						GCCCAAAGAGAGTAACATCCC	0.567													3	79					0	0	6.4e-05	0	0
SERPINB2	5055	broad.mit.edu	37	18	61570538	61570538	+	Nonstop_Mutation	SNP	A	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr18:61570538A>T	uc010xeu.1	+	9	1580	c.1247A>T	c.(1246-1248)TAA>TTA	p.*416L	SERPINB2_uc002ljo.2_Nonstop_Mutation_p.*416L|SERPINB2_uc010dqh.2_Nonstop_Mutation_p.*346L|SERPINB2_uc002ljp.1_Intron|SERPINB2_uc002ljq.1_Intron	NM_001143818	NP_001137290	P05120	PAI2_HUMAN	serine (or cysteine) proteinase inhibitor, clade	416					anti-apoptosis|blood coagulation|fibrinolysis|regulation of proteolysis	extracellular space|Golgi apparatus|plasma membrane	serine-type endopeptidase inhibitor activity			lung(1)|skin(1)	2		Esophageal squamous(42;0.131)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)|Urokinase(DB00013)	TCCTCACCCTAAAACTAAGCG	0.368													9	4					0	0	0.000978159	0	0
BSG	682	broad.mit.edu	37	19	582305	582305	+	Splice_Site	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:582305G>A	uc002loz.2	+	7	1168	c.1070_splice	c.e7-1	p.D357_splice	BSG_uc002loy.2_Splice_Site_p.D177_splice|BSG_uc002lpa.2_Splice_Site_p.D241_splice|BSG_uc002lpb.2_Splice_Site|BSG_uc010drr.2_Intron|BSG_uc002lpc.2_Splice_Site_p.D404_splice|BSG_uc002lpd.2_5'Flank	NM_001728	NP_001719	P35613	BASI_HUMAN	basigin isoform 1 precursor						blood coagulation|cell surface receptor linked signaling pathway|leukocyte migration|pyruvate metabolic process	Golgi membrane|integral to membrane|melanosome	lactate transmembrane transporter activity|mannose binding|protein binding				0		all_epithelial(18;2.78e-22)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TCCTTCTTCAGATGACGACGC	0.637													19	30					0	0	0.00047179	0	0
INSR	3643	broad.mit.edu	37	19	7122746	7122746	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:7122746C>A	uc002mgd.1	-	19	3517	c.3408G>T	c.(3406-3408)ATG>ATT	p.M1136I	INSR_uc002mge.1_Missense_Mutation_p.M1124I	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	1136	Protein kinase.|Cytoplasmic (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCATCTGAATCATCTCTTGAA	0.572													76	271					7.539e-32	7.71398e-31	0.000781405	1	0
XAB2	56949	broad.mit.edu	37	19	7689304	7689304	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:7689304G>C	uc002mgx.2	-	7	876	c.850C>G	c.(850-852)CGG>GGG	p.R284G		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	284	HAT 8.				transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						ATCACTGTCCGGATGGCCTCC	0.617								Direct_reversal_of_damage|NER					3	33					0	0	0.000602214	0	0
CLEC4M	10332	broad.mit.edu	37	19	7830630	7830630	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:7830630C>T	uc002mih.2	+	4	439	c.321C>T	c.(319-321)TCC>TCT	p.S107S	CLEC4M_uc010xjv.1_Silent_p.S79S|CLEC4M_uc002mhy.2_Silent_p.S51S|CLEC4M_uc010xjw.1_Silent_p.S86S|CLEC4M_uc010dvt.2_Silent_p.S107S|CLEC4M_uc010dvs.2_Silent_p.S106S|CLEC4M_uc010xjx.1_Silent_p.S79S|CLEC4M_uc002mhz.2_Silent_p.S107S|CLEC4M_uc002mic.2_Silent_p.S79S|CLEC4M_uc002mia.2_Silent_p.S86S	NM_001144910	NP_001138382	Q9H2X3	CLC4M_HUMAN	C-type lectin domain family 4, member M isoform	107	Extracellular (Probable).				cell-cell recognition|endocytosis|innate immune response|intracellular signal transduction|intracellular virion transport|leukocyte cell-cell adhesion|peptide antigen transport|viral genome replication|virion attachment to host cell surface receptor	cytoplasm|extracellular region|integral to plasma membrane	ICAM-3 receptor activity|mannose binding|metal ion binding|peptide antigen binding|virion binding			pancreas(1)	1						CAGAGAAATCCAAGCTGCAGG	0.552													39	45					0	0	0.000781405	0	0
MUC16	94025	broad.mit.edu	37	19	8987332	8987332	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:8987332C>A	uc002mkp.2	-	68	41959	c.41755G>T	c.(41755-41757)GGG>TGG	p.G13919W	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.G736W|MUC16_uc010xki.1_RNA	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGACCACCCCGGCTAGGGCA	0.597													18	17					3.8784e-16	3.95865e-15	0.000229342	1	0
MUC16	94025	broad.mit.edu	37	19	9083846	9083846	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:9083846G>C	uc002mkp.2	-	1	8173	c.7969C>G	c.(7969-7971)CCA>GCA	p.P2657A		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2657	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAACTTGTTGGCTCAGTGGCA	0.517													11	26					0	0	0.000151284	0	0
MUC16	94025	broad.mit.edu	37	19	9084638	9084638	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:9084638G>A	uc002mkp.2	-	1	7381	c.7177C>T	c.(7177-7179)CCC>TCC	p.P2393S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2393	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGCTAGTGGGACTGATGGAG	0.463													13	29					0	0	0.00010058	0	0
C19orf66	55337	broad.mit.edu	37	19	10202907	10202907	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:10202907C>T	uc002mmu.3	+	8	1103	c.805C>T	c.(805-807)CTG>TTG	p.L269L	C19orf66_uc002mmv.3_Silent_p.L233L|C19orf66_uc002mmw.3_Silent_p.L218L	NM_018381	NP_060851	Q9NUL5	CS066_HUMAN	hypothetical protein LOC55337	269	Asp/Glu-rich (acidic).										0						CAACCTCATCCTGGAGGACCT	0.488													3	9					0	0	6.4e-05	0	0
ILF3	3609	broad.mit.edu	37	19	10794134	10794134	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:10794134C>T	uc002mpn.2	+	15	2084	c.1767C>T	c.(1765-1767)TTC>TTT	p.F589F	ILF3_uc002mpm.2_Silent_p.F593F|ILF3_uc002mpl.2_Silent_p.F589F|ILF3_uc002mpk.2_Silent_p.F589F|ILF3_uc010xli.1_Silent_p.F187F|ILF3_uc002mpo.2_Silent_p.F593F|ILF3_uc002mpp.2_Silent_p.F414F|ILF3_uc002mpq.2_5'Flank	NM_012218	NP_036350	Q12906	ILF3_HUMAN	interleukin enhancer binding factor 3 isoform a	589	DRBM 2.				M phase|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrion|nucleolus|ribonucleoprotein complex	DNA binding|double-stranded RNA binding|protein binding|protein binding			ovary(3)	3			Epithelial(33;6.86e-06)|all cancers(31;1.65e-05)			AAAAGCTTTTCCCTGACACCC	0.542													19	16					0	0	0.00074312	0	0
ZNF799	90576	broad.mit.edu	37	19	12503428	12503428	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:12503428C>T	uc010dyt.2	-	3	330	c.180G>A	c.(178-180)AGG>AGA	p.R60R	ZNF799_uc002mts.3_Intron	NM_001080821	NP_001074290	Q96GE5	ZN799_HUMAN	zinc finger protein 799	60	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(3)|ovary(2)|skin(1)	6						TTAGATTTTTCCTGGGATATC	0.294													26	31					0	0	0.00106085	0	0
SLC25A42	284439	broad.mit.edu	37	19	19206977	19206977	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:19206977A>C	uc002nlf.1	+	2	195	c.44A>C	c.(43-45)GAT>GCT	p.D15A	SLC25A42_uc010xqn.1_Missense_Mutation_p.D67A	NM_178526	NP_848621	Q86VD7	S2542_HUMAN	solute carrier family 25, member 42	15					transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0			OV - Ovarian serous cystadenocarcinoma(5;5.4e-06)|Epithelial(12;0.000497)			TTGCATGAGGATGCTGAGGCT	0.642													9	13					0	0	0.000978159	0	0
GPI	2821	broad.mit.edu	37	19	34887329	34887329	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:34887329C>T	uc002nvg.1	+	13	1289	c.1186C>T	c.(1186-1188)CAC>TAC	p.H396Y	GPI_uc002nvf.2_Missense_Mutation_p.H435Y|GPI_uc010xrv.1_Missense_Mutation_p.H407Y|GPI_uc010xrw.1_Missense_Mutation_p.H368Y|GPI_uc010edl.1_Missense_Mutation_p.H396Y|GPI_uc002nvi.1_Missense_Mutation_p.H59Y	NM_000175	NP_000166	P06744	G6PI_HUMAN	glucose phosphate isomerase	396					angiogenesis|gluconeogenesis|glycolysis|hemostasis|humoral immune response	cytosol|extracellular space|nucleus|plasma membrane	cytokine activity|glucose-6-phosphate isomerase activity|growth factor activity			ovary(1)|kidney(1)	2	Esophageal squamous(110;0.162)					CCAGCTCATCCACCAAGGTAG	0.567													15	27					0	0	0.000308642	0	0
ARHGAP33	115703	broad.mit.edu	37	19	36278216	36278216	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:36278216C>T	uc002obs.1	+	21	2351	c.2266C>T	c.(2266-2268)CAG>TAG	p.Q756*	ARHGAP33_uc002obt.1_Nonsense_Mutation_p.Q781*|ARHGAP33_uc010eel.2_Nonsense_Mutation_p.Q505*|ARHGAP33_uc002obv.1_Nonsense_Mutation_p.Q505*	NM_052948	NP_443180	O14559	RHG33_HUMAN	sorting nexin 26	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell communication|protein transport|signal transduction	intracellular	GTPase activator activity|phosphatidylinositol binding|protein binding			skin(2)|ovary(1)|pancreas(1)	4						GCAACAGAGCCAGCAGGAGTG	0.721													8	15					0	0	0.000442599	0	0
NPHS1	4868	broad.mit.edu	37	19	36334397	36334398	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:36334397_36334398CC>TT	uc002oby.2	-	17	2310_2311	c.2310_2311GG>AA	c.(2308-2313)CCGGGC>CCAAGC	p.G771S		NM_004646	NP_004637	O60500	NPHN_HUMAN	nephrin precursor	771	Ig-like C2-type 7.|Extracellular (Potential).				cell adhesion|excretion|muscle organ development	integral to plasma membrane				ovary(4)|skin(1)	5	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			TTGAACATGCCCGGGAGGATGG	0.505													50	47					0	0	6.4e-05	0	0
NFKBIB	4793	broad.mit.edu	37	19	39396030	39396030	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:39396030C>T	uc002ojw.2	+	3	532	c.474C>T	c.(472-474)CCC>CCT	p.P158P	NFKBIB_uc002ojx.2_Silent_p.P126P|NFKBIB_uc002ojy.2_Silent_p.P158P	NM_002503	NP_002494	Q15653	IKBB_HUMAN	nuclear factor of kappa light polypeptide gene	158					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleus	protein binding|signal transducer activity|transcription coactivator activity			lung(1)|kidney(1)	2	all_cancers(60;4.39e-06)|Ovarian(47;0.0454)		Lung(45;0.000419)|LUSC - Lung squamous cell carcinoma(53;0.000554)			GGGAAGCCCCCGACACCTACC	0.687													4	13					0	0	0.00024832	0	0
ZNF235	9310	broad.mit.edu	37	19	44792789	44792789	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:44792789C>T	uc002oza.3	-	5	902	c.799G>A	c.(799-801)GAA>AAA	p.E267K	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.E263K|ZNF235_uc010xwx.1_Missense_Mutation_p.E181K	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	267	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				TCTTCACATTCATTACCCTGG	0.418													5	32					0	0	0.000602214	0	0
BCL2L12	83596	broad.mit.edu	37	19	50173529	50173529	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:50173529C>T	uc002ppa.2	+	6	1420	c.738C>T	c.(736-738)TTC>TTT	p.F246F	BCL2L12_uc002ppb.2_Silent_p.F245F	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	246					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		CCGACTCTTTCGCCCGCCTGG	0.731													5	16					0	0	8.12818e-05	0	0
ZNF614	80110	broad.mit.edu	37	19	52521669	52521670	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:52521669_52521670GG>AT	uc002pyj.2	-	3	495_496	c.93_94CC>AT	c.(91-96)AACCTG>AAATTG	p.N31K	ZNF614_uc002pyi.3_Missense_Mutation_p.N31K|ZNF614_uc010epj.2_5'UTR	NM_025040	NP_079316	Q8N883	ZN614_HUMAN	zinc finger protein 614	31	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	5		all_neural(266;0.0505)		GBM - Glioblastoma multiforme(134;0.00513)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		TCCCGGTACAGGTTCTTCTGAG	0.5													36	33					0	0	6.4e-05	0	0
NCR1	9437	broad.mit.edu	37	19	55417933	55417933	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:55417933G>A	uc002qib.2	+	3	161	c.123G>A	c.(121-123)AAG>AAA	p.K41K	NCR1_uc002qic.2_Silent_p.K41K|NCR1_uc002qie.2_Silent_p.K41K|NCR1_uc002qid.2_Intron|NCR1_uc002qif.2_Intron|NCR1_uc010esj.2_Intron	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	41	Ig-like 1.|Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		TGGTTCCAAAGGAAAAGCAAG	0.542													17	64					0	0	0.000958276	0	0
NLRP7	199713	broad.mit.edu	37	19	55451704	55451704	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:55451704C>T	uc002qih.3	-	4	559	c.483G>A	c.(481-483)TTG>TTA	p.L161L	NLRP7_uc002qig.3_Silent_p.L161L|NLRP7_uc002qii.3_Silent_p.L161L|NLRP7_uc010esk.2_Silent_p.L161L|NLRP7_uc010esl.2_Silent_p.L189L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	161							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TTCTGGGATTCAAGAATGGAA	0.507													83	83					0	0	0.000781405	0	0
C19orf51	352909	broad.mit.edu	37	19	55670814	55670814	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:55670814G>A	uc002qji.1	-	12	1276	c.1242C>T	c.(1240-1242)TAC>TAT	p.Y414Y	TNNI3_uc002qjg.3_5'Flank|TNNI3_uc010yft.1_5'Flank|C19orf51_uc002qjh.1_Silent_p.Y229Y|C19orf51_uc002qjj.1_Silent_p.Y461Y|C19orf51_uc002qjk.1_Silent_p.Y360Y|C19orf51_uc002qjl.1_Silent_p.Y481Y			Q8N9W5	CS051_HUMAN	RecName: Full=UPF0470 protein C19orf51;	414											0			BRCA - Breast invasive adenocarcinoma(297;0.209)	GBM - Glioblastoma multiforme(193;0.044)		CGTCCACCAGGTACCTGCAGA	0.627													13	53					0	0	0.000308642	0	0
NLRP4	147945	broad.mit.edu	37	19	56388493	56388493	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:56388493G>T	uc002qmd.3	+	8	3079	c.2657G>T	c.(2656-2658)CGG>CTG	p.R886L	NLRP4_uc002qmf.2_Missense_Mutation_p.R811L|NLRP4_uc010etf.2_Missense_Mutation_p.R661L	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	886	LRR 6.						ATP binding	p.R886W(1)		ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CTGTTGTGTCGGGCTCTGACG	0.498													5	119					8.12818e-05	0.000811643	8.12818e-05	1	0
ZNF776	284309	broad.mit.edu	37	19	58265665	58265665	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:58265665C>T	uc002qpx.2	+	3	1390	c.1167C>T	c.(1165-1167)TCC>TCT	p.S389S	ZNF587_uc002qqb.2_Intron|ZNF776_uc002qqa.2_Silent_p.S389S	NM_173632	NP_775903	Q68DI1	ZN776_HUMAN	zinc finger protein 776	389	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0256)		GGAGCAACTCCCACCTAAAGG	0.443													28	17					0	0	0.00106085	0	0
Unknown	0	broad.mit.edu	37	2	905402	905402	+	RNA	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:905402C>T	uc010ewg.2	-	1		c.181G>A			uc010ewh.1_Missense_Mutation_p.E182K					Homo sapiens cDNA FLJ46162 fis, clone TESTI4002520.																		TCTTTCATTTCCTCCCGGCCT	0.577													82	50					0	0	0.000781405	0	0
KIDINS220	57498	broad.mit.edu	37	2	8940625	8940625	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:8940625C>A	uc002qzc.2	-	9	987	c.805G>T	c.(805-807)GGG>TGG	p.G269W	KIDINS220_uc010yiv.1_Missense_Mutation_p.G35W|KIDINS220_uc002qzd.2_Missense_Mutation_p.G227W|KIDINS220_uc010yiw.1_Missense_Mutation_p.G270W	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	269	Cytoplasmic (Potential).|ANK 9.				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					ACAGTATCCCCACTCTAAGAA	0.343													9	268					6.40141e-05	0.00064076	0.000978159	1	0
ASXL2	55252	broad.mit.edu	37	2	25990459	25990459	+	Silent	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:25990459G>C	uc002rgs.2	-	7	989	c.768C>G	c.(766-768)CTC>CTG	p.L256L	ASXL2_uc002rgt.1_5'UTR	NM_018263	NP_060733	Q76L83	ASXL2_HUMAN	additional sex combs like 2	256					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|protein binding			pancreas(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TACTGGTATGGAGTCTCTCAG	0.393													30	50					0	0	0.000491102	0	0
CRIM1	51232	broad.mit.edu	37	2	36691751	36691751	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:36691751G>T	uc002rpd.2	+	5	983	c.944G>T	c.(943-945)GGC>GTC	p.G315V		NM_016441	NP_057525	Q9NZV1	CRIM1_HUMAN	cysteine-rich motor neuron 1 precursor	315	Extracellular (Potential).|Cell attachment site (Potential).				nervous system development|regulation of cell growth	extracellular region|integral to membrane|plasma membrane	insulin-like growth factor binding|insulin-like growth factor receptor activity|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_hematologic(82;0.131)|Acute lymphoblastic leukemia(82;0.154)				GTCTCTCGTGGCGATGGGACA	0.498													25	129					9.57634e-11	9.67911e-10	0.00047179	1	0
CDC42EP3	10602	broad.mit.edu	37	2	37873383	37873383	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:37873383T>A	uc002rqi.1	-	2	1341	c.348A>T	c.(346-348)CAA>CAT	p.Q116H		NM_006449	NP_006440	Q9UKI2	BORG2_HUMAN	Cdc42 effector protein 3	116					regulation of cell shape|signal transduction	actin cytoskeleton|cytoplasm|endomembrane system|membrane	cytoskeletal regulatory protein binding				0		all_hematologic(82;0.172)				ACATGAGAGCTTGGGATCCTC	0.557													22	88					0	0	0.000229342	0	0
SLC3A1	6519	broad.mit.edu	37	2	44539728	44539728	+	Missense_Mutation	SNP	G	A	A	rs139377923		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:44539728G>A	uc002ruc.3	+	8	1414	c.1336G>A	c.(1336-1338)GGT>AGT	p.G446S	SLC3A1_uc002rtz.2_Missense_Mutation_p.G446S|SLC3A1_uc002rua.2_Missense_Mutation_p.G446S|SLC3A1_uc002rub.2_Missense_Mutation_p.G446S|SLC3A1_uc002rud.3_Missense_Mutation_p.G168S|SLC3A1_uc002rue.3_Missense_Mutation_p.G66S	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1	446	Extracellular (Potential).				carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	CTTTCAGATTGGTGGACCAGA	0.403													64	25					0	0	0.000781405	0	0
TMEM17	200728	broad.mit.edu	37	2	62728427	62728427	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:62728427G>A	uc002sbt.2	-	4	854	c.514C>T	c.(514-516)CGT>TGT	p.R172C	TMEM17_uc002sbu.2_3'UTR|TMEM17_uc002sbv.1_3'UTR	NM_198276	NP_938017	Q86X19	TMM17_HUMAN	transmembrane protein 17	172						integral to membrane					0	Lung NSC(7;0.0274)|all_lung(7;0.0568)		LUSC - Lung squamous cell carcinoma(7;1.31e-05)|Epithelial(17;0.169)			AGGTGGAAACGAACTGCCAAC	0.428													20	111					0	0	0.000132079	0	0
ALMS1	7840	broad.mit.edu	37	2	73677148	73677148	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:73677148C>T	uc002sje.1	+	10	3608	c.3497C>T	c.(3496-3498)CCT>CTT	p.P1166L	ALMS1_uc002sjf.1_Missense_Mutation_p.P1122L|ALMS1_uc002sjg.2_Missense_Mutation_p.P552L|ALMS1_uc002sjh.1_Missense_Mutation_p.P552L	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	1164	14.|34 X 47 AA approximate tandem repeat.				G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						ACTCATATACCTGAAGAGGCT	0.458													112	54					0	0	0.000781405	0	0
C2orf78	388960	broad.mit.edu	37	2	74041260	74041260	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:74041260G>A	uc002sjr.1	+	2	875	c.754G>A	c.(754-756)GAG>AAG	p.E252K		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	252										ovary(2)	2						GGTGCTGAAGGAGGTTCAGCC	0.483													16	93					0	0	0.000308642	0	0
SEMA4F	10505	broad.mit.edu	37	2	74907289	74907289	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:74907289C>T	uc002sna.1	+	14	2377	c.2266C>T	c.(2266-2268)CGG>TGG	p.R756W	SEMA4F_uc010ffr.1_Missense_Mutation_p.R368W|SEMA4F_uc002snb.1_Missense_Mutation_p.R368W|SEMA4F_uc002snc.1_Missense_Mutation_p.R601W	NM_004263	NP_004254	O95754	SEM4F_HUMAN	semaphorin W precursor	756	Cytoplasmic (Potential).				cell-cell signaling	endoplasmic reticulum|integral to plasma membrane	receptor activity			ovary(2)|pancreas(1)|skin(1)	4						AGCCCACATTCGGCTAACTGG	0.557													10	69					0	0	0.000978159	0	0
POLR1B	84172	broad.mit.edu	37	2	113333151	113333151	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:113333151C>G	uc002thw.2	+	15	3833	c.3253C>G	c.(3253-3255)CCC>GCC	p.P1085A	POLR1B_uc010fkn.2_Missense_Mutation_p.P1029A|POLR1B_uc002thx.2_Missense_Mutation_p.P946A|POLR1B_uc010fko.2_Missense_Mutation_p.P902A|POLR1B_uc010fkp.2_Missense_Mutation_p.P524A|POLR1B_uc010yxn.1_Missense_Mutation_p.P1123A|POLR1B_uc002thy.2_Missense_Mutation_p.P946A|POLR1B_uc010yxo.1_Missense_Mutation_p.P862A	NM_019014	NP_061887	Q9H9Y6	RPA2_HUMAN	RNA polymerase I polypeptide B isoform 1	1085	C4-type (Potential).				termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|protein binding|ribonucleoside binding			ovary(1)	1						GGAGAAGCCACCCCCTTCTTG	0.483													27	27					0	0	0.00106085	0	0
DDX18	8886	broad.mit.edu	37	2	118575276	118575276	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:118575276G>C	uc002tlh.1	+	2	441	c.342G>C	c.(340-342)AAG>AAC	p.K114N		NM_006773	NP_006764	Q9NVP1	DDX18_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	114	Poly-Lys.						ATP binding|ATP-dependent RNA helicase activity|RNA binding			breast(2)|ovary(1)|lung(1)	4						AGAAGAAAAAGAGAAAAATGG	0.348													27	87					0	0	0.000878237	0	0
CCDC74A	90557	broad.mit.edu	37	2	132290454	132290454	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:132290454C>T	uc002tta.2	+	6	946	c.894C>T	c.(892-894)TCC>TCT	p.S298S	CCDC74A_uc002ttb.2_Silent_p.S232S	NM_138770	NP_620125	Q96AQ1	CC74A_HUMAN	coiled-coil domain containing 74A	298										skin(1)	1						ACCTCAAGTCCCTCCTGGAAG	0.701													17	16					0	0	0.000295444	0	0
YSK4	80122	broad.mit.edu	37	2	135738899	135738899	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:135738899T>C	uc002tue.1	-	9	3443	c.3412A>G	c.(3412-3414)ATT>GTT	p.I1138V	YSK4_uc002tuf.1_Missense_Mutation_p.I320V|YSK4_uc010fnc.1_Missense_Mutation_p.I272V|YSK4_uc010fnd.1_Missense_Mutation_p.I1025V|YSK4_uc010zbg.1_Missense_Mutation_p.I270V|YSK4_uc002tuh.3_Missense_Mutation_p.I866V|YSK4_uc002tui.3_3'UTR	NM_025052	NP_079328	Q56UN5	YSK4_HUMAN	Yeast Sps1/Ste20-related kinase 4 isoform 1	1138	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|urinary_tract(1)|ovary(1)|breast(1)	5				BRCA - Breast invasive adenocarcinoma(221;0.112)		TCCATGAAAATGCTCACAGTG	0.408													17	45					0	0	0.000958276	0	0
LRP1B	53353	broad.mit.edu	37	2	141460004	141460004	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:141460004C>T	uc002tvj.1	-	38	7114	c.6142G>A	c.(6142-6144)GAC>AAC	p.D2048N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2048	Extracellular (Potential).|LDL-receptor class B 21.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCTCATAGTCGATGGAGATG	0.398										TSP Lung(27;0.18)			4	15					0	0	0.00024832	0	0
LRP1B	53353	broad.mit.edu	37	2	141460024	141460024	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:141460024C>T	uc002tvj.1	-	38	7094	c.6122G>A	c.(6121-6123)TGG>TAG	p.W2041*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2041	Extracellular (Potential).|LDL-receptor class B 21.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCCATTCGGCCATGCTATTCC	0.438										TSP Lung(27;0.18)			4	16					0	0	0.000602214	0	0
LRP1B	53353	broad.mit.edu	37	2	141806610	141806610	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:141806610G>A	uc002tvj.1	-	11	2706	c.1734C>T	c.(1732-1734)TTC>TTT	p.F578F	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	578	Extracellular (Potential).|LDL-receptor class B 5.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGCCAATTAGGAAACTGGTGG	0.428										TSP Lung(27;0.18)			6	25					0	0	8.12818e-05	0	0
KCNH7	90134	broad.mit.edu	37	2	163374414	163374414	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:163374414G>A	uc002uch.1	-	4	930	c.718C>T	c.(718-720)CCC>TCC	p.P240S	KCNH7_uc002uci.2_Missense_Mutation_p.P240S	NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	240	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	TGCCTTTTGGGAGAGGAATGG	0.498													5	8					0	0	3.59834e-05	0	0
SCN9A	6335	broad.mit.edu	37	2	167134676	167134676	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:167134676A>C	uc010fpl.2	-	15	2799	c.2458T>G	c.(2458-2460)TTG>GTG	p.L820V	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	831	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	AGAACTGACAATCCTTCCACA	0.343													7	26					0	0	0.000442599	0	0
MYO3B	140469	broad.mit.edu	37	2	171256757	171256757	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:171256757C>T	uc002ufy.2	+	17	1994	c.1851C>T	c.(1849-1851)TTC>TTT	p.F617F	MYO3B_uc002ufv.2_Silent_p.F604F|MYO3B_uc010fqb.1_Silent_p.F604F|MYO3B_uc002ufz.2_Silent_p.F617F|MYO3B_uc002ufw.2_RNA|MYO3B_uc002ufx.2_RNA|MYO3B_uc002ugb.2_RNA	NM_138995	NP_620482	Q8WXR4	MYO3B_HUMAN	myosin IIIB isoform 2	617	Myosin head-like.				response to stimulus|visual perception	cytoplasm|myosin complex	actin binding|ATP binding|motor activity|protein serine/threonine kinase activity			lung(8)|ovary(6)|skin(4)|central_nervous_system(1)	19						ACATTGAGTTCGCAGCTATTT	0.403													63	72					0	0	0.000781405	0	0
GORASP2	26003	broad.mit.edu	37	2	171819372	171819372	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:171819372C>G	uc002ugk.2	+	9	1074	c.934C>G	c.(934-936)CTG>GTG	p.L312V	GORASP2_uc002ugj.2_Missense_Mutation_p.L244V|GORASP2_uc010zdl.1_Missense_Mutation_p.L324V|GORASP2_uc010zdm.1_Missense_Mutation_p.L268V|GORASP2_uc002ugl.2_Missense_Mutation_p.L244V|GORASP2_uc002ugm.2_Missense_Mutation_p.L94V	NM_015530	NP_056345	Q9H8Y8	GORS2_HUMAN	golgi reassembly stacking protein 2	312	Pro-rich.					Golgi membrane				breast(1)|central_nervous_system(1)	2						ACCAGCAGGACTGCCCAACCT	0.468													8	27					0	0	0.000673444	0	0
GPR155	151556	broad.mit.edu	37	2	175306874	175306874	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:175306874T>A	uc002uit.2	-	15	2538	c.2147A>T	c.(2146-2148)CAT>CTT	p.H716L	GPR155_uc002uiu.2_Missense_Mutation_p.H716L|GPR155_uc002uiv.2_Missense_Mutation_p.H716L|GPR155_uc010fqs.2_Missense_Mutation_p.H688L	NM_001033045	NP_001028217	Q7Z3F1	GP155_HUMAN	G protein-coupled receptor 155 isoform 9	716					intracellular signal transduction|transmembrane transport	integral to membrane				ovary(1)	1						GATGATTAAATGTTTATCTAA	0.269													10	54					0	0	0.000442599	0	0
FAM171B	165215	broad.mit.edu	37	2	187627296	187627296	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:187627296C>T	uc002ups.2	+	8	2339	c.2227C>T	c.(2227-2229)CTA>TTA	p.L743L	FAM171B_uc002upr.1_Silent_p.L710L|FAM171B_uc002upt.2_Silent_p.L212L	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	743	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AGATTTAGACCTAAGCAGCAG	0.488													10	33					0	0	0.000151284	0	0
ASNSD1	54529	broad.mit.edu	37	2	190532655	190532655	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:190532655C>T	uc002uqt.2	+	5	2064	c.1630C>T	c.(1630-1632)CAT>TAT	p.H544Y		NM_019048	NP_061921	Q9NWL6	ASND1_HUMAN	asparagine synthetase domain containing 1	544	Asparagine synthetase.				asparagine biosynthetic process|glutamine metabolic process		asparagine synthase (glutamine-hydrolyzing) activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.00318)|Epithelial(96;0.0449)|all cancers(119;0.118)			TATTGGTGATCATGGAAAAGA	0.358													17	79					0	0	0.000958276	0	0
DNAH7	56171	broad.mit.edu	37	2	196681368	196681368	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:196681368C>T	uc002utj.3	-	51	9846	c.9745G>A	c.(9745-9747)GAA>AAA	p.E3249K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3249					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GCCAAAATTTCTGATTTCTCT	0.328													10	25					0	0	0.000673444	0	0
ICA1L	130026	broad.mit.edu	37	2	203684597	203684597	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:203684597G>A	uc002uzh.1	-	6	549	c.385C>T	c.(385-387)CGT>TGT	p.R129C	ICA1L_uc002uzi.1_Missense_Mutation_p.R129C|ICA1L_uc002uzj.2_Missense_Mutation_p.R129C	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	129	AH.										0						TGCTTCAGACGAGACAGAGGA	0.423													79	237					0	0	0.000781405	0	0
ZDBF2	57683	broad.mit.edu	37	2	207174867	207174867	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:207174867G>A	uc002vbp.2	+	5	5865	c.5615G>A	c.(5614-5616)GGG>GAG	p.G1872E		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1872							nucleic acid binding|zinc ion binding			ovary(3)	3						TCTTCGAAGGGGAAAAAAAAG	0.418													5	17					0	0	3.59834e-05	0	0
FN1	2335	broad.mit.edu	37	2	216289995	216289995	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:216289995G>A	uc002vfa.2	-	7	1124	c.858C>T	c.(856-858)TTC>TTT	p.F286F	FN1_uc002vfb.2_Silent_p.F286F|FN1_uc002vfc.2_Silent_p.F286F|FN1_uc002vfd.2_Silent_p.F286F|FN1_uc002vfe.2_Silent_p.F286F|FN1_uc002vff.2_Silent_p.F286F|FN1_uc002vfg.2_Silent_p.F286F|FN1_uc002vfh.2_Silent_p.F286F|FN1_uc002vfi.2_Silent_p.F286F|FN1_uc002vfj.2_Silent_p.F286F|FN1_uc002vfl.2_Silent_p.F286F	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	286					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GAACATCGGTGAAGGGGCCAG	0.522													139	48					0	0	0.000781405	0	0
SMARCAL1	50485	broad.mit.edu	37	2	217279882	217279882	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:217279882C>T	uc002vgc.3	+	3	785	c.455C>T	c.(454-456)CCT>CTT	p.P152L	SMARCAL1_uc010fvf.2_RNA|SMARCAL1_uc002vgd.3_Missense_Mutation_p.P152L|SMARCAL1_uc010fvg.2_Missense_Mutation_p.P152L	NM_014140	NP_054859	Q9NZC9	SMAL1_HUMAN	SWI/SNF-related matrix-associated	152					chromatin modification|DNA metabolic process|regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity			ovary(3)|breast(3)|skin(1)	7		Renal(323;0.0458)		Epithelial(149;9.48e-06)|all cancers(144;0.000621)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0111)		CAGGCTTCACCTGAGATCAGG	0.512									Schimke_Immuno-Osseous_Dysplasia				131	43					0	0	0.000781405	0	0
KIAA1486	57624	broad.mit.edu	37	2	226446804	226446804	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr2:226446804G>A	uc002voe.2	+	4	846	c.671G>A	c.(670-672)CGG>CAG	p.R224Q	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_5'UTR	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	224										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TCGCTGCCGCGGGACTCCTCC	0.592													33	296					0	0	0.000491102	0	0
C20orf7	79133	broad.mit.edu	37	20	13769244	13769244	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:13769244C>T	uc002wom.2	+	3	306	c.273C>T	c.(271-273)CCC>CCT	p.P91P	C20orf7_uc002wol.1_Silent_p.P91P|C20orf7_uc002won.2_Silent_p.P91P|C20orf7_uc002woo.2_RNA	NM_024120	NP_077025	Q5TEU4	CT007_HUMAN	hypothetical protein LOC79133 isoform 1	91					mitochondrial respiratory chain complex I assembly	extrinsic to mitochondrial inner membrane	methyltransferase activity				0		Myeloproliferative disorder(85;0.00878)				GAAATTTCCCCCTTGCTTTGG	0.303													43	13					0	0	0.000781405	0	0
SLC24A3	57419	broad.mit.edu	37	20	19261652	19261652	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:19261652G>A	uc002wrl.2	+	2	389	c.192G>A	c.(190-192)GCG>GCA	p.A64A	LOC100130264_uc010zsd.1_Intron	NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	64	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GGATGATGGCGAGGAAGCTGA	0.522													31	8					0	0	0.000339439	0	0
KIAA1755	85449	broad.mit.edu	37	20	36869541	36869541	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:36869541G>A	uc002xhy.1	-	3	1264	c.992C>T	c.(991-993)TCC>TTC	p.S331F	KIAA1755_uc002xhz.1_Missense_Mutation_p.S331F	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	331										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				ATTTCCCAAGGAAGGTCCTTC	0.488													105	228					0	0	0.000781405	0	0
CHD6	84181	broad.mit.edu	37	20	40049911	40049912	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:40049911_40049912CC>AA	uc002xka.1	-	31	5541_5542	c.5363_5364GG>TT	c.(5362-5364)GGG>GTT	p.G1788V		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1788					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				AGCAGAGCTCCCCTTCCTTTGA	0.46													9	279					0	0	6.4e-05	0	0
ZNF335	63925	broad.mit.edu	37	20	44592393	44592393	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:44592393C>T	uc002xqw.2	-	8	1462	c.1339G>A	c.(1339-1341)GGC>AGC	p.G447S	ZNF335_uc010zxk.1_Missense_Mutation_p.G292S	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	447					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				TATTTCTTGCCTAGGAAGCGC	0.607													53	148					0	0	0.000781405	0	0
EYA2	2139	broad.mit.edu	37	20	45812033	45812033	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:45812033G>A	uc002xsm.2	+	15	1904	c.1530G>A	c.(1528-1530)GCG>GCA	p.A510A	EYA2_uc010ghp.2_Silent_p.A431A|EYA2_uc002xsn.2_Silent_p.A515A|EYA2_uc002xso.2_Silent_p.A510A|EYA2_uc002xsp.2_Silent_p.A510A|EYA2_uc002xsq.2_Silent_p.A480A	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	510					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				agcaaggagcgaaaaaggtac	0.403													57	39					0	0	0.000781405	0	0
ZFP64	55734	broad.mit.edu	37	20	50768918	50768918	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:50768918T>C	uc002xwl.2	-	6	2162	c.1813A>G	c.(1813-1815)ACC>GCC	p.T605A	ZFP64_uc002xwk.2_Intron|ZFP64_uc002xwm.2_Missense_Mutation_p.T603A|ZFP64_uc002xwn.2_Missense_Mutation_p.T551A	NM_018197	NP_060667	Q9NPA5	ZF64A_HUMAN	zinc finger protein 64 isoform a	605					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						CCCGAACTGGTAATGAAAGTT	0.562													14	91					0	0	0.000308642	0	0
CASS4	57091	broad.mit.edu	37	20	55027732	55027732	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:55027732C>T	uc002xxp.2	+	6	1725	c.1500C>T	c.(1498-1500)GTC>GTT	p.V500V	CASS4_uc002xxq.3_Silent_p.V500V|CASS4_uc002xxr.2_Silent_p.V500V|CASS4_uc010zze.1_Silent_p.V446V|CASS4_uc010gio.2_Intron	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	500					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CCCGAGGAGTCCATGGGACTG	0.478													45	36					0	0	0.000680045	0	0
PCK1	5105	broad.mit.edu	37	20	56139563	56139563	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:56139563G>A	uc002xyn.3	+	8	1375	c.1212G>A	c.(1210-1212)TCG>TCA	p.S404S	PCK1_uc010zzm.1_Silent_p.S87S	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	404	Substrate binding.				gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			ACCCCAACTCGAGGTTCTGCA	0.587													37	94					0	0	0.00111076	0	0
ZNF831	128611	broad.mit.edu	37	20	57768418	57768418	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:57768418G>A	uc002yan.2	+	1	2344	c.2344G>A	c.(2344-2346)GAC>AAC	p.D782N		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	782						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGTTTGGCCGGACCCCAAGCT	0.657													7	23					0	0	0.000274275	0	0
PHACTR3	116154	broad.mit.edu	37	20	58381145	58381145	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:58381145G>A	uc002yau.2	+	8	1691	c.1224G>A	c.(1222-1224)AGG>AGA	p.R408R	PHACTR3_uc002yat.2_Silent_p.R405R|PHACTR3_uc010zzw.1_Silent_p.R367R|PHACTR3_uc002yav.2_Silent_p.R367R|PHACTR3_uc002yaw.2_Silent_p.R367R|PHACTR3_uc002yax.2_Silent_p.R297R	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	408	RPEL 2.					nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			TGAAGCTAAGGAACCGGCCAA	0.517													136	115					0	0	0.000781405	0	0
DIDO1	11083	broad.mit.edu	37	20	61511949	61511949	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:61511949C>T	uc002ydr.1	-	16	5623	c.5359G>A	c.(5359-5361)GCT>ACT	p.A1787T	DIDO1_uc002yds.1_Missense_Mutation_p.A1787T	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1787	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					TCGTTAGAAGCGATATTCTCT	0.617													15	173					0	0	0.000566183	0	0
COL20A1	57642	broad.mit.edu	37	20	61957455	61957455	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr20:61957455G>A	uc011aau.1	+	30	3510	c.3410G>A	c.(3409-3411)AGA>AAA	p.R1137K	COL20A1_uc011aav.1_Missense_Mutation_p.R958K	NM_020882	NP_065933	Q9P218	COKA1_HUMAN	collagen, type XX, alpha 1	1137	Collagen-like 2.				cell adhesion	collagen|extracellular space	structural molecule activity			central_nervous_system(1)	1	all_cancers(38;1.39e-10)					CAGGGAATGAGAGGCCTGGAG	0.657													14	63					0	0	0.00074312	0	0
KRTAP10-10	353333	broad.mit.edu	37	21	46057641	46057641	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr21:46057641G>A	uc002zfq.2	+	1	369	c.307G>A	c.(307-309)GTC>ATC	p.V103I	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_181688	NP_859016	P60014	KR10A_HUMAN	keratin associated protein 10-10	103	6.|15 X 5 AA repeats of C-C-X(3).					keratin filament					0						ctgtgtgcccgtctgctgcgt	0.328													40	41					0	0	0.000319135	0	0
ITGB2	3689	broad.mit.edu	37	21	46323296	46323297	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr21:46323296_46323297GG>AA	uc002zgd.2	-	4	526_527	c.482_483CC>TT	c.(481-483)ACC>ATT	p.T161I	ITGB2_uc002zge.2_Missense_Mutation_p.T161I|ITGB2_uc002zgf.3_Missense_Mutation_p.T161I|ITGB2_uc011afl.1_Missense_Mutation_p.T83I|ITGB2_uc010gpw.2_Intron|ITGB2_uc002zgg.2_Missense_Mutation_p.T161I	NM_001127491	NP_001120963	P05107	ITB2_HUMAN	integrin, beta 2 precursor	161	Extracellular (Potential).|VWFA.				apoptosis|blood coagulation|cell-cell signaling|cell-matrix adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|multicellular organismal development|neutrophil chemotaxis|regulation of cell shape|regulation of immune response|regulation of peptidyl-tyrosine phosphorylation	integrin complex	glycoprotein binding|protein kinase binding|receptor activity			ovary(4)|central_nervous_system(3)|breast(2)	9				Colorectal(79;0.0669)	Simvastatin(DB00641)	GGCCGGACTCGGTGATCTCGTT	0.594													32	47					0	0	6.4e-05	0	0
PI4KA	5297	broad.mit.edu	37	22	21088363	21088363	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:21088363G>A	uc002zsz.3	-	34	4077	c.3846C>T	c.(3844-3846)AAC>AAT	p.N1282N	PI4KA_uc002zsy.3_Silent_p.N92N	NM_058004	NP_477352	P42356	PI4KA_HUMAN	phosphatidylinositol 4-kinase type 3 alpha	1282					phosphatidylinositol biosynthetic process|phosphatidylinositol-mediated signaling|synaptic transmission	Golgi-associated vesicle	1-phosphatidylinositol 4-kinase activity|ATP binding|protein binding			lung(2)|upper_aerodigestive_tract(1)|salivary_gland(1)	4	all_cancers(11;7.59e-25)|all_epithelial(7;1.34e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)			CCACGTGCCGGTTCATGCTCC	0.632													11	12					0	0	0.00010058	0	0
LOC96610	96610	broad.mit.edu	37	22	23055665	23055665	+	RNA	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:23055665G>A	uc011aim.1	+	153		c.9380G>A								Parts of antibodies, mostly variable regions.												0						TCAGGTGTGGGATAGTAGTAG	0.587													9	26					0	0	0.000978159	0	0
LOC96610	96610	broad.mit.edu	37	22	23237605	23237605	+	RNA	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:23237605G>A	uc011aim.1	+	363		c.15008G>A			uc011aiw.1_Missense_Mutation_p.E126K|uc010gtu.1_RNA|uc002zws.2_Intron					Parts of antibodies, mostly variable regions.												0						CTCCTCTGAGGAGCTCCAAGC	0.612													17	36					0	0	0.00074312	0	0
MYO18B	84700	broad.mit.edu	37	22	26222395	26222395	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:26222395G>A	uc003abz.1	+	14	2965	c.2715G>A	c.(2713-2715)GTG>GTA	p.V905V	MYO18B_uc003aca.1_Silent_p.V786V|MYO18B_uc010guy.1_Silent_p.V786V|MYO18B_uc010guz.1_Silent_p.V786V|MYO18B_uc011aka.1_Silent_p.V59V|MYO18B_uc011akb.1_Silent_p.V418V	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	905	Myosin head-like.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						TGACAGGAGTGGACTGTGTGG	0.562													42	153					0	0	0.000781405	0	0
ASCC2	84164	broad.mit.edu	37	22	30202248	30202248	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:30202248C>T	uc003agr.2	-	12	1222	c.1117G>A	c.(1117-1119)GTG>ATG	p.V373M	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.V373M|ASCC2_uc011akr.1_Missense_Mutation_p.V297M	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	373					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			TCTTCGGCCACGGGGAAGAGT	0.582													17	132					0	0	0.000175454	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30953356	30953357	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:30953356_30953357GG>AA	uc003aig.1	-	3	163_164	c.23_24CC>TT	c.(22-24)CCC>CTT	p.P8L	GAL3ST1_uc003aih.1_Missense_Mutation_p.P8L|GAL3ST1_uc003aii.1_Missense_Mutation_p.P8L|GAL3ST1_uc010gvz.1_Missense_Mutation_p.P8L	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	8	Cytoplasmic (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						TGGACTCCCAGGGCTTCTTCTG	0.653													52	34					0	0	6.4e-05	0	0
ISX	91464	broad.mit.edu	37	22	35481636	35481636	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:35481636C>T	uc003anj.2	+	4	1639	c.688C>T	c.(688-690)CTT>TTT	p.L230F	ISX_uc011amg.1_Missense_Mutation_p.L218F	NM_001008494	NP_001008494	Q2M1V0	ISX_HUMAN	intestine-specific homeobox	230						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)	5						GCTATGCATCCTTCCACCTCC	0.552													87	49					0	0	0.000781405	0	0
NPTXR	23467	broad.mit.edu	37	22	39219117	39219117	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:39219117G>A	uc003awk.2	-	4	1403	c.1249C>T	c.(1249-1251)CAT>TAT	p.H417Y		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	417	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					AGGATCCCATGAGGCTTGATG	0.488													28	70					0	0	0.000692331	0	0
SMC1B	27127	broad.mit.edu	37	22	45785651	45785651	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr22:45785651G>A	uc003bgc.2	-	10	1724	c.1672C>T	c.(1672-1674)CGA>TGA	p.R558*	SMC1B_uc003bgd.2_Nonsense_Mutation_p.R558*|SMC1B_uc003bge.1_Nonsense_Mutation_p.R341*	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	558	Flexible hinge.				chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		TTCAGAAATCGAATACAATCT	0.388													126	76					0	0	0.000781405	0	0
WNT7A	7476	broad.mit.edu	37	3	13860703	13860703	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:13860703G>A	uc003bye.1	-	4	1093	c.788C>T	c.(787-789)CCC>CTC	p.P263L		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	263					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						CGTGTCCATGGGCTTGCGGTA	0.627													38	69					0	0	0.000589545	0	0
BTD	686	broad.mit.edu	37	3	15677086	15677086	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:15677086C>G	uc003cah.2	+	2	303	c.200C>G	c.(199-201)TCC>TGC	p.S67C	BTD_uc011avv.1_Missense_Mutation_p.S69C|BTD_uc011avw.1_Missense_Mutation_p.S69C|BTD_uc011avx.1_Missense_Mutation_p.S47C	NM_000060	NP_000051	P43251	BTD_HUMAN	biotinidase precursor	67	CN hydrolase.				central nervous system development|epidermis development|nitrogen compound metabolic process	extracellular space	biotin carboxylase activity|biotinidase activity				0						GAGCATCCATCCATCCTGAGT	0.557													24	105					0	0	0.000586117	0	0
MIR128-2	406916	broad.mit.edu	37	3	35785977	35785977	+	RNA	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:35785977G>A	hsa-mir-128-2|MI0000727	+			c.10G>A			ARPP21_uc003cga.2_Intron|ARPP21_uc003cgb.2_Intron|ARPP21_uc011axy.1_Intron|ARPP21_uc003cgf.2_Intron|ARPP21_uc003cgg.2_Intron|uc011axz.1_RNA																	0						CTGTGCAGTGGGAAGGGGGGC	0.552													19	32					0	0	0.000175454	0	0
DCLK3	85443	broad.mit.edu	37	3	36779958	36779958	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:36779958C>T	uc003cgi.2	-	2	684	c.193G>A	c.(193-195)GAA>AAA	p.E65K		NM_033403	NP_208382	Q9C098	DCLK3_HUMAN	doublecortin-like kinase 3	65						cytoplasm|nucleus	ATP binding|protein serine/threonine kinase activity			lung(3)|large_intestine(2)|breast(1)|skin(1)|ovary(1)|kidney(1)	9						CCTGCAACTTCGCTGCAGCTC	0.612													63	60					0	0	0.000781405	0	0
TRANK1	9881	broad.mit.edu	37	3	36898030	36898030	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:36898030C>T	uc003cgj.2	-	3	1703	c.1401G>A	c.(1399-1401)GTG>GTA	p.V467V		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	1017					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TGAGGTCGATCACCGCGTACT	0.537													56	79					0	0	0.000781405	0	0
ACVR2B	93	broad.mit.edu	37	3	38519700	38519700	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:38519700G>C	uc003cif.2	+	4	463	c.439G>C	c.(439-441)GGG>CGG	p.G147R	ACVR2B_uc003cig.2_5'UTR	NM_001106	NP_001097	Q13705	AVR2B_HUMAN	activin A receptor, type IIB precursor	147	Helical; (Potential).				activin receptor signaling pathway|anterior/posterior pattern formation|BMP signaling pathway|positive regulation of activin receptor signaling pathway|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|regulation of transcription, DNA-dependent	cell surface|cytoplasm|integral to plasma membrane	activin receptor activity|ATP binding|growth factor binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|transforming growth factor beta receptor activity			lung(1)	1	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0565)|Kidney(284;0.071)		GCTGCCCATCGGGGGCCTTTC	0.627													3	50					0	0	6.4e-05	0	0
ULK4	54986	broad.mit.edu	37	3	41957541	41957541	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:41957541G>A	uc003ckv.3	-	8	932	c.731C>T	c.(730-732)TCT>TTT	p.S244F	ULK4_uc003ckw.2_Missense_Mutation_p.S244F|ULK4_uc003ckx.1_Missense_Mutation_p.S244F	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	244	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		AGGACGAGAAGAATCTATAAA	0.274													35	62					0	0	0.000814825	0	0
HHATL	57467	broad.mit.edu	37	3	42735116	42735116	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:42735116C>T	uc003clw.2	-	11	1388	c.1241G>A	c.(1240-1242)CGA>CAA	p.R414Q	HHATL_uc003clx.2_Missense_Mutation_p.R414Q	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	414					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm				ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		CACCTCAATTCGTGCTAGGGG	0.577													9	10					0	0	0.00010058	0	0
PFKFB4	5210	broad.mit.edu	37	3	48563046	48563046	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:48563046G>A	uc003ctv.2	-	10	1061	c.1044C>T	c.(1042-1044)TTC>TTT	p.F348F	PFKFB4_uc003ctw.2_Silent_p.F157F|PFKFB4_uc010hkc.2_Intron|PFKFB4_uc003ctx.2_Silent_p.F305F|PFKFB4_uc010hkb.2_Silent_p.F341F|PFKFB4_uc011bbm.1_Silent_p.F337F|PFKFB4_uc011bbn.1_RNA	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	348	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		CCCGCAGGGCGAACTCCAGTG	0.562													13	20					0	0	0.000422831	0	0
CCDC71	64925	broad.mit.edu	37	3	49200991	49200991	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:49200991C>T	uc003cwg.3	-	2	789	c.651G>A	c.(649-651)GGG>GGA	p.G217G		NM_022903	NP_075054	Q8IV32	CCD71_HUMAN	coiled-coil domain containing 71	217										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00217)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		CCGGACCCTTCCCTGAACTTT	0.592													44	63					0	0	0.000781405	0	0
USP4	7375	broad.mit.edu	37	3	49331918	49331919	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:49331918_49331919CC>AA	uc003cwq.2	-	14	1883_1884	c.1804_1805GG>TT	c.(1804-1806)GGG>TTG	p.G602L	USP4_uc003cwo.2_Missense_Mutation_p.G314L|USP4_uc003cwp.2_Missense_Mutation_p.G332L|USP4_uc003cwr.2_Missense_Mutation_p.G555L	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	602					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		TAGTGGCTGCCCATATAGCGCT	0.515													7	86					0	0	6.4e-05	0	0
DNAH1	25981	broad.mit.edu	37	3	52433701	52433701	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:52433701G>A	uc011bef.1	+	77	12843	c.12582G>A	c.(12580-12582)GAG>GAA	p.E4194E	DNAH1_uc003ddv.2_Missense_Mutation_p.R1027K	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	4259					ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		TGTACACAGAGATGGCCGTTA	0.552													28	48					0	0	0.000878237	0	0
POU1F1	5449	broad.mit.edu	37	3	87309110	87309110	+	Missense_Mutation	SNP	T	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:87309110T>G	uc003dqq.1	-	6	935	c.810A>C	c.(808-810)AAA>AAC	p.K270N	POU1F1_uc010hoj.1_Missense_Mutation_p.K296N	NM_000306	NP_000297	P28069	PIT1_HUMAN	pituitary specific transcription factor 1	270	Homeobox.				negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)|skin(1)	2	all_cancers(8;0.104)|Lung SC(3;0.184)	Lung NSC(201;0.0777)		LUSC - Lung squamous cell carcinoma(29;0.00229)|Lung(72;0.00677)		TTTTCACCCGTTTTTCTCTCT	0.373													16	30					0	0	0.000958276	0	0
ZPLD1	131368	broad.mit.edu	37	3	102176642	102176642	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:102176642C>T	uc003dvs.1	+	12	1409	c.527C>T	c.(526-528)TCT>TTT	p.S176F	ZPLD1_uc003dvt.1_Missense_Mutation_p.S192F|ZPLD1_uc011bhg.1_Missense_Mutation_p.S176F	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	176	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						GCGGCTATTTCTGTGAGAGAG	0.373													58	74					0	0	0.000781405	0	0
HEG1	57493	broad.mit.edu	37	3	124689608	124689609	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:124689608_124689609CC>TT	uc003ehs.3	-	17	4101_4102	c.4033_4034GG>AA	c.(4033-4035)GGA>AAA	p.G1345K	HEG1_uc003ehr.3_Missense_Mutation_p.G199K|HEG1_uc011bke.1_Missense_Mutation_p.G1445K	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	1345	Cytoplasmic (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						CGGGTAGAGTCCGTTTCGTTCA	0.436													5	8					0	0	6.4e-05	0	0
COL6A6	131873	broad.mit.edu	37	3	130282243	130282243	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:130282243C>T	uc010htl.2	+	2	427	c.396C>T	c.(394-396)CCC>CCT	p.P132P		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	132	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AACAGTTTCCCCCAATTCTAG	0.507													16	21					0	0	0.000958276	0	0
PRR23C	389152	broad.mit.edu	37	3	138763024	138763024	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:138763024C>T	uc011bmt.1	-	1	711	c.439G>A	c.(439-441)GAG>AAG	p.E147K		NM_001134657	NP_001128129	Q6ZRP0	PR23C_HUMAN	proline rich 23C	147										skin(1)	1						GCAGCGATCTCTGGGACAGAT	0.662													4	7					0	0	0.000602214	0	0
RASA2	5922	broad.mit.edu	37	3	141295844	141295844	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:141295844G>A	uc003etz.1	+	15	1486	c.1486G>A	c.(1486-1488)GAC>AAC	p.D496N	RASA2_uc010huq.1_Missense_Mutation_p.D496N|RASA2_uc003eua.1_Missense_Mutation_p.D496N|RASA2_uc011bnc.1_Missense_Mutation_p.D88N	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	496	Ras-GAP.				intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						TCCTGCAGATGACCCTCATGT	0.348													24	83					0	0	0.000375601	0	0
PLSCR2	57047	broad.mit.edu	37	3	146166996	146166996	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:146166996G>A	uc003evv.1	-	7	975	c.642C>T	c.(640-642)CTC>CTT	p.L214L	PLSCR2_uc003evw.1_Silent_p.L283L	NM_020359	NP_065092	Q9NRY7	PLS2_HUMAN	phospholipid scramblase 2	214	Helical; (Potential).				phospholipid scrambling	integral to membrane|plasma membrane	calcium ion binding|phospholipid scramblase activity				0						GACTTACAATGAGGAAACAGG	0.348													41	58					0	0	0.000509022	0	0
MED12L	116931	broad.mit.edu	37	3	151075068	151075068	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:151075068A>C	uc003eyp.2	+	18	2662	c.2624A>C	c.(2623-2625)TAT>TCT	p.Y875S	MED12L_uc011bnz.1_Missense_Mutation_p.Y735S|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.Y39S	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	875					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GCAGGAAGTTATACAACAGGA	0.448													11	41					0	0	0.000978159	0	0
MED12L	116931	broad.mit.edu	37	3	151075134	151075134	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:151075134A>T	uc003eyp.2	+	18	2728	c.2690A>T	c.(2689-2691)AAT>ATT	p.N897I	MED12L_uc011bnz.1_Missense_Mutation_p.N757I|P2RY12_uc011boa.1_Intron|P2RY12_uc003eyx.1_Intron|MED12L_uc003eyy.1_Missense_Mutation_p.N61I	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	897					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			CTAATCTTGAATCCTGATCAG	0.423													13	55					0	0	0.000308642	0	0
ZBBX	79740	broad.mit.edu	37	3	167023529	167023529	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:167023529C>T	uc003fep.2	-	17	1950	c.1627G>A	c.(1627-1629)GAG>AAG	p.E543K	ZBBX_uc011bpc.1_Missense_Mutation_p.E543K|ZBBX_uc003feq.2_Missense_Mutation_p.E514K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	543						intracellular	zinc ion binding			ovary(2)	2						AATTTCTCCTCAATGGGAGCT	0.353													16	36					0	0	0.000422831	0	0
PIK3CA	5290	broad.mit.edu	37	3	178921433	178921433	+	Silent	SNP	A	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:178921433A>T	uc003fjk.2	+	5	1072	c.915A>T	c.(913-915)CCA>CCT	p.P305P		NM_006218	NP_006209	P42336	PK3CA_HUMAN	phosphoinositide-3-kinase, catalytic, alpha	305					epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|T cell costimulation|T cell receptor signaling pathway		1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity			breast(1564)|large_intestine(776)|endometrium(246)|urinary_tract(195)|ovary(141)|skin(112)|stomach(98)|thyroid(77)|central_nervous_system(69)|lung(65)|upper_aerodigestive_tract(58)|haematopoietic_and_lymphoid_tissue(27)|cervix(25)|biliary_tract(22)|liver(20)|oesophagus(17)|pancreas(11)|penis(8)|pituitary(8)|autonomic_ganglia(4)|prostate(3)|kidney(2)|meninges(1)|eye(1)|NS(1)|soft_tissue(1)|bone(1)	3553	all_cancers(143;1.19e-17)|Ovarian(172;0.00769)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;9.59e-28)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0282)			TTACAATGCCATCTTATTCCA	0.368		57	Mis		colorectal|gastric|gliobastoma|breast					HNSCC(19;0.045)|TSP Lung(28;0.18)			26	103					0	0	0.00106085	0	0
ECE2	9718	broad.mit.edu	37	3	183967612	183967612	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:183967612G>A	uc003fni.3	+	1	168	c.130G>A	c.(130-132)GAC>AAC	p.D44N	ALG3_uc003fne.2_5'Flank|ALG3_uc011brc.1_5'Flank|ALG3_uc011brd.1_5'Flank|ALG3_uc011bre.1_5'Flank|ALG3_uc003fnf.1_5'Flank|ALG3_uc011brf.1_5'Flank|ECE2_uc003fnh.3_Missense_Mutation_p.D44N	NM_014693	NP_055508	O60344	ECE2_HUMAN	endothelin converting enzyme 2 isoform A	44	Cytoplasmic (Potential).|Methyltransferase-like region.				brain development|cardioblast differentiation|cell-cell signaling|peptide hormone processing	cytoplasmic vesicle membrane|Golgi membrane|integral to membrane	metal ion binding|metalloendopeptidase activity|methyltransferase activity			ovary(2)|skin(2)	4	all_cancers(143;1.39e-10)|Ovarian(172;0.0339)		Epithelial(37;8.28e-34)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			TTGGTTCGGGGACTTCTCCTC	0.652											OREG0015944	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	29	34					0	0	0.000692331	0	0
ATP13A3	79572	broad.mit.edu	37	3	194146149	194146149	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:194146149T>A	uc003fty.3	-	29	3637	c.3235A>T	c.(3235-3237)ATT>TTT	p.I1079F	ATP13A3_uc003ftx.3_5'UTR	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	1079	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		AAACTGGAAATAAAAAACACT	0.348													33	33					0	0	0.000339439	0	0
ZNF518B	85460	broad.mit.edu	37	4	10445449	10445449	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:10445449A>G	uc003gmn.2	-	3	2991	c.2504T>C	c.(2503-2505)ATG>ACG	p.M835T		NM_053042	NP_444270	Q9C0D4	Z518B_HUMAN	zinc finger protein 518B	835					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)	4						ATTTGGGGACATATCTATTGG	0.458													70	19					0	0	0.000781405	0	0
TBC1D1	23216	broad.mit.edu	37	4	38091574	38091574	+	Missense_Mutation	SNP	T	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:38091574T>A	uc003gtb.2	+	13	2415	c.2072T>A	c.(2071-2073)CTT>CAT	p.L691H	TBC1D1_uc011byd.1_Missense_Mutation_p.L785H|TBC1D1_uc010ifd.2_Missense_Mutation_p.L478H|TBC1D1_uc011byf.1_Missense_Mutation_p.L562H	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	691						nucleus	Rab GTPase activator activity			ovary(1)	1						CTGGGAGAGCTTCCCCCACGA	0.473													93	20					0	0	0.000781405	0	0
TECRL	253017	broad.mit.edu	37	4	65180428	65180428	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:65180428C>G	uc003hcv.2	-	5	598	c.489G>C	c.(487-489)TTG>TTC	p.L163F	TECRL_uc003hcw.2_Missense_Mutation_p.L163F	NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	163	Helical; (Potential).				lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						ATGGGATCCTCAAATAAAAGA	0.299													3	52					0	0	6.4e-05	0	0
UGT2B10	7365	broad.mit.edu	37	4	69874758	69874758	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:69874758C>T	uc011cao.1	-	8	1149	c.1013G>A	c.(1012-1014)GGA>GAA	p.G338E	UGT2B10_uc011can.1_Missense_Mutation_p.G254E			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	375					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GCCATTGGCTCCACCATGAGT	0.398													36	15					0	0	0.000374591	0	0
HERC3	8916	broad.mit.edu	37	4	89591116	89591116	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:89591116C>T	uc003hrw.1	+	15	1905	c.1739C>T	c.(1738-1740)CCC>CTC	p.P580L	HERC3_uc011cdn.1_Missense_Mutation_p.P462L|HERC3_uc011cdo.1_Missense_Mutation_p.P24L	NM_014606	NP_055421	Q15034	HERC3_HUMAN	hect domain and RLD 3	580					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasmic membrane-bounded vesicle	ubiquitin-protein ligase activity			lung(2)|prostate(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(123;0.000319)		TTCTTAATTCCCGTACTGTTT	0.428													22	14					0	0	0.000229342	0	0
ADH1A	124	broad.mit.edu	37	4	100205660	100205660	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:100205660C>T	uc003hur.1	-	5	534	c.463G>A	c.(463-465)GAA>AAA	p.E155K	uc003hum.1_Intron|ADH1A_uc011ceg.1_Missense_Mutation_p.E155K|ADH1A_uc010ilf.1_5'UTR	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	155					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	ACTGCATTTTCATCCACCACT	0.522													17	7					0	0	0.000422831	0	0
MTTP	4547	broad.mit.edu	37	4	100521847	100521847	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:100521847G>C	uc003hvc.3	+	10	1449	c.1193G>C	c.(1192-1194)GGA>GCA	p.G398A	MTTP_uc011cej.1_Missense_Mutation_p.G425A	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	398	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	TATGCCTGTGGATTTGCTTCT	0.393													17	10					0	0	0.000132079	0	0
PPP3CA	5530	broad.mit.edu	37	4	101961690	101961690	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:101961690C>T	uc011cen.1	-	11	1865	c.1190G>A	c.(1189-1191)AGG>AAG	p.R397K	PPP3CA_uc003hvu.2_Missense_Mutation_p.R397K|PPP3CA_uc010ilj.2_Missense_Mutation_p.R355K|PPP3CA_uc003hvt.2_Missense_Mutation_p.R384K|PPP3CA_uc003hvs.2_Missense_Mutation_p.R330K|PPP3CA_uc010ilk.2_Missense_Mutation_p.R165K	NM_000944	NP_000935	Q08209	PP2BA_HUMAN	protein phosphatase 3, catalytic subunit, alpha	397	Calmodulin-binding (Potential).				protein dephosphorylation	calcineurin complex|cytosol|nucleus	calcium ion binding|calmodulin binding			ovary(1)|skin(1)	2				OV - Ovarian serous cystadenocarcinoma(123;6.79e-08)		GATCTTGTTCCTTATCACCTC	0.393													8	29					0	0	0.000274275	0	0
DCHS2	54798	broad.mit.edu	37	4	155158041	155158041	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:155158041G>A	uc003inw.2	-	25	6398	c.6398C>T	c.(6397-6399)TCC>TTC	p.S2133F		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2133	Cadherin 19.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		ACTGATGATGGAATATTCAAC	0.383													20	11					0	0	0.000958276	0	0
CCDC111	201973	broad.mit.edu	37	4	185615812	185615812	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr4:185615812A>C	uc003iwk.2	+	14	1995	c.1562A>C	c.(1561-1563)TAT>TCT	p.Y521S	CCDC111_uc003iwj.2_Missense_Mutation_p.Y520S|CCDC111_uc003iwl.2_Missense_Mutation_p.Y521S|CCDC111_uc003iwm.2_Missense_Mutation_p.Y392S|CCDC111_uc003iwn.2_Missense_Mutation_p.Y261S|MLF1IP_uc003iwp.2_RNA|MLF1IP_uc003iwq.2_3'UTR	NM_152683	NP_689896	Q96LW4	CC111_HUMAN	coiled-coil domain containing 111	521					DNA replication, synthesis of RNA primer		DNA primase activity			central_nervous_system(1)	1		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.00531)|Hepatocellular(41;0.00932)|Renal(120;0.0246)|Prostate(90;0.0283)|all_hematologic(60;0.0749)|all_neural(102;0.131)		all cancers(43;5.84e-27)|Epithelial(43;2.2e-23)|OV - Ovarian serous cystadenocarcinoma(60;4.28e-11)|STAD - Stomach adenocarcinoma(60;2.66e-05)|GBM - Glioblastoma multiforme(59;3.03e-05)|Colorectal(24;7.57e-05)|BRCA - Breast invasive adenocarcinoma(30;0.000249)|COAD - Colon adenocarcinoma(29;0.000502)|LUSC - Lung squamous cell carcinoma(40;0.00995)|READ - Rectum adenocarcinoma(43;0.173)		GATGATGCTTATTTTTTAGAA	0.413													12	35					0	0	0.000978159	0	0
AHRR	57491	broad.mit.edu	37	5	434652	434652	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:434652G>A	uc003jav.2	+	12	1907	c.1863G>A	c.(1861-1863)AGG>AGA	p.R621R	AHRR_uc003jaw.2_Silent_p.R599R|AHRR_uc010isy.2_Silent_p.R449R|AHRR_uc010isz.2_Silent_p.R599R|AHRR_uc003jax.2_Silent_p.R362R|AHRR_uc003jay.2_Silent_p.R459R|AHRR_uc003jaz.2_Silent_p.R220R	NM_020731	NP_065782	A9YTQ3	AHRR_HUMAN	arylhydrocarbon receptor repressor	603	Needed for transcriptional repression (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			breast(2)	2			Epithelial(17;0.0011)|OV - Ovarian serous cystadenocarcinoma(19;0.00353)|all cancers(22;0.00354)|Lung(60;0.0863)			CCCATGGGAGGGCCACTGCTG	0.672													4	11					0	0	0.00024832	0	0
SLC6A3	6531	broad.mit.edu	37	5	1441597	1441597	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:1441597G>A	uc003jck.2	-	3	416	c.295C>T	c.(295-297)CTG>TTG	p.L99L		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	99	Helical; Name=2; (Potential).				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	TAGGGGACCAGGAAGGCACCT	0.602													20	35					0	0	0.000375601	0	0
PAPD7	11044	broad.mit.edu	37	5	6746348	6746349	+	Missense_Mutation	DNP	CG	AT	AT	rs138124674		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:6746348_6746349CG>AT	uc003jdx.1	+	7	646_647	c.517_518CG>AT	c.(517-519)CGG>ATG	p.R173M	PAPD7_uc011cmn.1_Missense_Mutation_p.R164M|PAPD7_uc010itl.1_Translation_Start_Site	NM_006999	NP_008930	Q5XG87	PAPD7_HUMAN	DNA polymerase sigma	173					cell division|DNA replication|double-strand break repair|mitotic chromosome condensation|response to drug|sister chromatid cohesion	nucleus	DNA binding|DNA-directed DNA polymerase activity|metal ion binding|SMC protein binding			ovary(1)	1						AATTGATGCCCGGAGAGCTGAT	0.381											OREG0016494	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	119					0	0	6.4e-05	0	0
DNAH5	1767	broad.mit.edu	37	5	13920716	13920716	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:13920716C>T	uc003jfd.2	-	6	713	c.671G>A	c.(670-672)CGA>CAA	p.R224Q	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	224	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCACACTTTCGAAGGTTCAC	0.393									Kartagener_syndrome				46	58					0	0	0.000589545	0	0
ZNF622	90441	broad.mit.edu	37	5	16458709	16458709	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:16458709T>C	uc003jfq.2	-	4	1199	c.1079A>G	c.(1078-1080)GAG>GGG	p.E360G		NM_033414	NP_219482	Q969S3	ZN622_HUMAN	zinc finger protein 622	360						cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						ATTGGGGTCCTCCCCTTCCTT	0.378													3	115					0	0	0.00024832	0	0
CDH18	1016	broad.mit.edu	37	5	19483644	19483644	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:19483644G>A	uc003jgc.2	-	11	2025	c.1648C>T	c.(1648-1650)CTG>TTG	p.L550L	CDH18_uc003jgd.2_Silent_p.L550L|CDH18_uc011cnm.1_Intron	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	550	Extracellular (Potential).|Cadherin 5.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					CGCCTTGTCAGAATGCTGGCT	0.428													36	59					0	0	0.000319135	0	0
NIPBL	25836	broad.mit.edu	37	5	37022475	37022475	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:37022475C>T	uc003jkl.3	+	29	6056	c.5557C>T	c.(5557-5559)CTG>TTG	p.L1853L	NIPBL_uc003jkk.3_Silent_p.L1853L	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	1853	HEAT 2.				brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TTATGATATGCTGATTGAAAG	0.333													16	36					0	0	0.00074312	0	0
C6	729	broad.mit.edu	37	5	41181509	41181509	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:41181509G>A	uc003jmk.2	-	7	1089	c.879C>T	c.(877-879)ATC>ATT	p.I293I	C6_uc003jml.1_Silent_p.I293I	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	293	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				AATTATGGTTGATATTTTCAC	0.358													26	81					0	0	0.00106085	0	0
IQGAP2	10788	broad.mit.edu	37	5	76003063	76003063	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:76003063G>A	uc003kek.2	+	36	4875	c.4653G>A	c.(4651-4653)ATG>ATA	p.M1551I	IQGAP2_uc011csv.1_Missense_Mutation_p.M1047I|IQGAP2_uc003kel.2_Missense_Mutation_p.M1047I	NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	1551					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		TAGCTGTAATGAAAATGTTTG	0.308													7	30					0	0	0.000157383	0	0
LOC644936	644936	broad.mit.edu	37	5	79595817	79595817	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:79595817C>T	uc010jai.2	-	1	481	c.340G>A	c.(340-342)GAA>AAA	p.E114K		NR_004845				Homo sapiens cytoplasmic beta-actin pseudogene, mRNA (cDNA clone IMAGE:30378151).												0						CCACAGGATTCCATGCCCACG	0.522													8	13					0	0	0.000157383	0	0
HAPLN1	1404	broad.mit.edu	37	5	82948428	82948428	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:82948428C>T	uc003kim.2	-	2	387	c.316G>A	c.(316-318)GGA>AGA	p.G106R	HAPLN1_uc003kin.2_Missense_Mutation_p.G106R	NM_001884	NP_001875	P10915	HPLN1_HUMAN	hyaluronan and proteoglycan link protein 1	106	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding			large_intestine(3)|ovary(1)|skin(1)	5		Lung NSC(167;0.0484)|all_lung(232;0.0522)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;7.82e-42)|Epithelial(54;5.88e-35)|all cancers(79;1.14e-29)		TGGTAGCCTCCATAGGTTTTT	0.433													14	68					0	0	0.000422831	0	0
EDIL3	10085	broad.mit.edu	37	5	83433158	83433158	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:83433158C>T	uc003kio.1	-	5	789	c.370G>A	c.(370-372)GAA>AAA	p.E124K	EDIL3_uc003kip.1_Missense_Mutation_p.E114K	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	124	EGF-like 3.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GGCTCAACTTCGCATTCATTT	0.333													23	39					0	0	0.000229342	0	0
GPR98	84059	broad.mit.edu	37	5	89949028	89949028	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:89949028G>A	uc003kju.2	+	20	3733	c.3637G>A	c.(3637-3639)GGA>AGA	p.G1213R	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1213	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TGTTACAGGTGGATCCCCAGG	0.398													6	3					0	0	3.59834e-05	0	0
GPR98	84059	broad.mit.edu	37	5	90000297	90000297	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:90000297G>A	uc003kju.2	+	36	8474	c.8378G>A	c.(8377-8379)AGG>AAG	p.R2793K	GPR98_uc003kjt.2_Missense_Mutation_p.R499K|GPR98_uc003kjv.2_Missense_Mutation_p.R393K	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	2793	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TATGATGTCAGGACACAAGGT	0.303													4	3					0	0	0.00024832	0	0
GPR98	84059	broad.mit.edu	37	5	90084111	90084111	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:90084111A>T	uc003kju.2	+	68	13973	c.13877A>T	c.(13876-13878)AAA>ATA	p.K4626I	GPR98_uc003kjt.2_Missense_Mutation_p.K2332I|GPR98_uc003kjw.2_Missense_Mutation_p.K287I	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4626	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCCAGAGCTAAAGATGTTACA	0.299													15	48					0	0	0.000422831	0	0
FNIP1	96459	broad.mit.edu	37	5	131039813	131039813	+	Missense_Mutation	SNP	G	A	A	rs13177318		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:131039813G>A	uc003kvs.1	-	10	1203	c.1061C>T	c.(1060-1062)TCA>TTA	p.S354L	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Missense_Mutation_p.S326L|FNIP1_uc010jdm.1_Missense_Mutation_p.S309L|FNIP1_uc003kvu.2_Missense_Mutation_p.S354L	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	354					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		AGGAAAATGTGAAAAAAAGAA	0.289													27	18					0	0	0.000227799	0	0
ACSL6	23305	broad.mit.edu	37	5	131309057	131309057	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:131309057A>G	uc010jdo.1	-	12	1113	c.1030T>C	c.(1030-1032)TTC>CTC	p.F344L	ACSL6_uc003kvv.1_RNA|ACSL6_uc003kvx.1_Missense_Mutation_p.F369L|ACSL6_uc003kvy.1_Missense_Mutation_p.F369L|ACSL6_uc003kwb.2_Missense_Mutation_p.F334L|ACSL6_uc003kvz.1_Intron|ACSL6_uc003kwa.1_Missense_Mutation_p.F355L|ACSL6_uc003kvw.1_5'UTR|ACSL6_uc010jdn.1_Missense_Mutation_p.F359L|ACSL6_uc010jdp.1_RNA	NM_015256	NP_056071	Q9UKU0	ACSL6_HUMAN	acyl-CoA synthetase long-chain family member 6	344	Cytoplasmic (Potential).				fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane|plasma membrane	ATP binding|long-chain fatty acid-CoA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3		all_cancers(142;0.107)|Breast(839;0.198)|Lung NSC(810;0.216)|all_lung(232;0.248)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCTCCCTGGAAGAAGCCAACA	0.547													11	24					0	0	0.000151284	0	0
PCDHA7	56141	broad.mit.edu	37	5	140216216	140216216	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:140216216T>C	uc003lhq.2	+	1	2248	c.2248T>C	c.(2248-2250)TTC>CTC	p.F750L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc011dac.1_Missense_Mutation_p.F750L	NM_018910	NP_061733	Q9UN72	PCDA7_HUMAN	protocadherin alpha 7 isoform 1 precursor	750	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGCTGGTCATTCTCCCAGCA	0.637													7	25					0	0	0.000157383	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140389311	140389311	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:140389311C>T	uc003lii.2	+	4	3053	c.2813C>T	c.(2812-2814)CCC>CTC	p.P938L	PCDHA1_uc003lha.2_Missense_Mutation_p.P617L|PCDHA1_uc003lhb.2_Missense_Mutation_p.P881L|PCDHA2_uc003lhd.2_Missense_Mutation_p.P879L|PCDHA3_uc003lhf.2_Missense_Mutation_p.P881L|PCDHA4_uc003lhi.2_Missense_Mutation_p.P878L|PCDHA4_uc003lhh.1_Missense_Mutation_p.P878L|PCDHA5_uc003lhk.1_Missense_Mutation_p.P867L|PCDHA5_uc003lhl.2_Missense_Mutation_p.P867L|PCDHA6_uc003lhn.2_Missense_Mutation_p.P617L|PCDHA6_uc003lho.2_Missense_Mutation_p.P881L|PCDHA7_uc003lhq.2_Missense_Mutation_p.P868L|PCDHA8_uc003lhs.2_Missense_Mutation_p.P881L|PCDHA9_uc003lhu.2_Missense_Mutation_p.P881L|PCDHA10_uc003lhw.2_Missense_Mutation_p.P616L|PCDHA10_uc003lhx.2_Missense_Mutation_p.P879L|PCDHA11_uc003lia.2_Missense_Mutation_p.P880L|PCDHA12_uc003lic.2_Missense_Mutation_p.P872L|PCDHA13_uc003lie.1_Missense_Mutation_p.P881L|PCDHA13_uc003lif.2_Missense_Mutation_p.P881L|PCDHAC1_uc003lih.2_Missense_Mutation_p.P894L	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	938	4 X 4 AA repeats of P-X-X-P.|Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAATCCGGTCCCGGTGAGTTG	0.522													26	39					0	0	0.000878237	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562580	140562580	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:140562580G>A	uc003liv.2	+	1	1601	c.446G>A	c.(445-447)GGA>GAA	p.G149E	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	149	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTCCTCTAGGAACTGAGTTC	0.393													31	19					0	0	0.000339439	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140710468	140710468	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:140710468C>T	uc003lji.1	+	1	217	c.217C>T	c.(217-219)CCG>TCG	p.P73S	PCDHGA1_uc011dan.1_Missense_Mutation_p.P73S	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	73	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTAGGATGCCGCTTTTCGC	0.587													48	46					0	0	0.000781405	0	0
PCDHGA11	56105	broad.mit.edu	37	5	140801022	140801022	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:140801022C>T	uc003lkq.1	+	1	486	c.228C>T	c.(226-228)TTC>TTT	p.F76F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lko.1_Silent_p.F76F|PCDHGA11_uc003lkp.1_Silent_p.F76F	NM_018914	NP_061737	Q9Y5H2	PCDGB_HUMAN	protocadherin gamma subfamily A, 11 isoform 1	76	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACAGCTTTTCGCTGTGAATC	0.587													34	17					0	0	0.000814825	0	0
ARAP3	64411	broad.mit.edu	37	5	141051754	141051754	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:141051754G>A	uc003llm.2	-	10	1578	c.1500C>T	c.(1498-1500)GCC>GCT	p.A500A	ARAP3_uc011dbe.1_Silent_p.A162A|ARAP3_uc003lln.2_Silent_p.A422A|ARAP3_uc003llo.1_Silent_p.A500A	NM_022481	NP_071926	Q8WWN8	ARAP3_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	500	Arf-GAP.				cytoskeleton organization|negative regulation of cell migration|negative regulation of Rho protein signal transduction|regulation of ARF GTPase activity|regulation of cell shape|small GTPase mediated signal transduction|vesicle-mediated transport	cytoskeleton|cytosol|lamellipodium|plasma membrane|ruffle	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|Rho GTPase activator activity|zinc ion binding			breast(5)|ovary(1)|large_intestine(1)	7						ACTGCCGGTTGGCCCGATTAG	0.622													25	52					0	0	0.000586117	0	0
GABRG2	2566	broad.mit.edu	37	5	161569262	161569262	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:161569262G>A	uc003lyz.3	+	7	1220	c.862G>A	c.(862-864)GTC>ATC	p.V288I	GABRG2_uc010jjc.2_Missense_Mutation_p.V328I|GABRG2_uc003lyy.3_Missense_Mutation_p.V288I|GABRG2_uc011dej.1_Missense_Mutation_p.V193I	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	288	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		ACTCATTGTCGTCCTATCCTG	0.433													97	37					0	0	0.000781405	0	0
BTNL8	79908	broad.mit.edu	37	5	180335890	180335891	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr5:180335890_180335891CC>AA	uc003mmp.2	+	2	588_589	c.354_355CC>AA	c.(352-357)TCCCAG>TCAAAG	p.Q119K	BTNL8_uc003mmq.2_Missense_Mutation_p.Q119K|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Missense_Mutation_p.Q119K|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	119	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGATTAGTTCCCAGTCTTACTA	0.465													12	394					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	6	1515378	1515378	+	RNA	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:1515378G>A	uc003mto.2	+	4		c.598G>A								Homo sapiens cDNA clone IMAGE:30390216.																		CCCTCAAGCAGGTAGGAGATT	0.478													18	59					0	0	0.00074312	0	0
DSP	1832	broad.mit.edu	37	6	7583534	7583534	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:7583534G>A	uc003mxp.1	+	24	6318	c.6039G>A	c.(6037-6039)CGG>CGA	p.R2013R	DSP_uc003mxq.1_Silent_p.R1414R	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2013	Plectin 1.|Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CATTCCTTCGGGGTGCAGGAT	0.448													28	49					0	0	0.000720815	0	0
CAP2	10486	broad.mit.edu	37	6	17543150	17543150	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:17543150C>T	uc003ncb.2	+	10	1328	c.1085C>T	c.(1084-1086)TCA>TTA	p.S362L	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Missense_Mutation_p.S336L|CAP2_uc011djb.1_Missense_Mutation_p.S298L|CAP2_uc011djc.1_Missense_Mutation_p.S250L|CAP2_uc011djd.1_Missense_Mutation_p.S102L	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	362	C-CAP/cofactor C-like.				activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			TGCGAAAAATCAACTATTCAG	0.338													48	81					0	0	0.000781405	0	0
CDKAL1	54901	broad.mit.edu	37	6	21065409	21065410	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:21065409_21065410CC>AA	uc003ndc.1	+	12	1360_1361	c.1186_1187CC>AA	c.(1186-1188)CCA>AAA	p.P396K	CDKAL1_uc003ndd.1_Missense_Mutation_p.P396K|CDKAL1_uc003nde.1_Missense_Mutation_p.P326K|CDKAL1_uc003ndf.1_5'UTR	NM_017774	NP_060244	Q5VV42	CDKAL_HUMAN	CDK5 regulatory subunit associated protein	396					RNA modification	integral to membrane	4 iron, 4 sulfur cluster binding|metal ion binding|transferase activity			ovary(2)	2	all_epithelial(95;0.0708)|Breast(50;0.131)|Ovarian(93;0.227)		OV - Ovarian serous cystadenocarcinoma(7;0.0241)|all cancers(50;0.123)|Epithelial(50;0.248)			CCAATTTTACCCAAGACCAGGA	0.371													9	401					0	0	6.4e-05	0	0
BTN1A1	696	broad.mit.edu	37	6	26509343	26509343	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:26509343G>T	uc003nif.3	+	7	1542	c.1522G>T	c.(1522-1524)GAT>TAT	p.D508Y		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	508	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						TGCCCCTAGGGATGCAGACAC	0.522													9	94					0.00010058	0.00100193	0.00010058	1	0
C6orf15	29113	broad.mit.edu	37	6	31079317	31079318	+	Missense_Mutation	DNP	CC	TT	TT	rs112157845		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:31079317_31079318CC>TT	uc003nsk.1	-	2	818_819	c.818_819GG>AA	c.(817-819)GGG>GAA	p.G273E		NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	273	Gly-rich.										0						GATTAATATTCCCCCAGCTGCC	0.5													32	91					0	0	6.4e-05	0	0
C6orf15	29113	broad.mit.edu	37	6	31079351	31079351	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:31079351C>T	uc003nsk.1	-	2	785	c.785G>A	c.(784-786)GGA>GAA	p.G262E		NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	262	Gly-rich.										0						ATTAATATTTCCCCAGCTGCC	0.502													7	102					0	0	0.000157383	0	0
BAT1	7919	broad.mit.edu	37	6	31500583	31500584	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:31500583_31500584GG>AA	uc003ntt.2	-	7	1471_1472	c.840_841CC>TT	c.(838-843)GACCTT>GATTTT	p.L281F	BAT1_uc003ntq.2_5'Flank|BAT1_uc003ntr.2_Missense_Mutation_p.L88F|BAT1_uc003nts.2_Missense_Mutation_p.L281F|BAT1_uc011dnn.1_Missense_Mutation_p.L203F|BAT1_uc003ntu.2_Missense_Mutation_p.L281F|BAT1_uc003ntv.2_Missense_Mutation_p.L281F	NM_004640	NP_004631	Q13838	DX39B_HUMAN	HLA-B associated transcript 1	281	Helicase C-terminal.				intronless viral mRNA export from host nucleus|RNA secondary structure unwinding|spliceosome assembly	nuclear speck|spliceosomal complex|transcription export complex	ATP binding|ATP-dependent protein binding|ATP-dependent RNA helicase activity|identical protein binding|U4 snRNA binding|U6 snRNA binding				0						ACATCCAGAAGGTCAAAGAGCT	0.49													25	65					0	0	6.4e-05	0	0
SYNGAP1	8831	broad.mit.edu	37	6	33403030	33403030	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:33403030C>T	uc011dri.1	+	6	806	c.611C>T	c.(610-612)TCC>TTC	p.S204F	SYNGAP1_uc003oeo.1_Missense_Mutation_p.S189F|SYNGAP1_uc010juy.2_Missense_Mutation_p.S189F|SYNGAP1_uc010juz.2_5'Flank	NM_006772	NP_006763	Q96PV0	SYGP1_HUMAN	synaptic Ras GTPase activating protein 1	204	PH.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity|SH3 domain binding			ovary(4)	4						GATGAAGATTCCATTATCAAG	0.547													49	40					0	0	0.000781405	0	0
BMP5	653	broad.mit.edu	37	6	55625290	55625290	+	Missense_Mutation	SNP	C	T	T	rs147691986		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:55625290C>T	uc003pcq.2	-	5	1781	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	BMP5_uc011dxf.1_Missense_Mutation_p.E357K	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	357					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			ACATAGAGTTCGTGCTTCTTA	0.348													19	11					0	0	0.000175454	0	0
BAI3	577	broad.mit.edu	37	6	70065728	70065728	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:70065728G>A	uc003pev.3	+	28	4019	c.3571G>A	c.(3571-3573)GAT>AAT	p.D1191N	BAI3_uc010kak.2_Missense_Mutation_p.D1191N|BAI3_uc011dxx.1_Missense_Mutation_p.D397N	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1191	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				CTTTGAAAAGGATGTAGACAT	0.284													48	47					0	0	0.000781405	0	0
FBXL4	26235	broad.mit.edu	37	6	99365585	99365585	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:99365585G>A	uc003ppf.1	-	4	881	c.523C>T	c.(523-525)CTT>TTT	p.L175F	FBXL4_uc003ppg.1_Missense_Mutation_p.L175F|FBXL4_uc003pph.1_Intron	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	175					ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		TCTGACCAAAGAATCTCCCAT	0.408													10	43					0	0	0.000442599	0	0
SLC22A16	85413	broad.mit.edu	37	6	110763784	110763784	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:110763784G>A	uc003puf.2	-	4	913	c.846C>T	c.(844-846)ATC>ATT	p.I282I	SLC22A16_uc003pue.2_Silent_p.I263I	NM_033125	NP_149116	Q86VW1	S22AG_HUMAN	solute carrier family 22, member 16	282	Helical; (Potential).				acid secretion|cell differentiation|multicellular organismal development|single fertilization|sperm motility|spermatogenesis	integral to membrane	carnitine transporter activity			ovary(1)	1		all_cancers(87;0.00221)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.0485)|Colorectal(196;0.101)		OV - Ovarian serous cystadenocarcinoma(136;0.0513)|Epithelial(106;0.0921)|all cancers(137;0.115)		AACAGCACAGGATAAAGGGGA	0.488													22	25					0	0	0.000375601	0	0
RFX6	222546	broad.mit.edu	37	6	117248363	117248363	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:117248363C>T	uc003pxm.2	+	17	2122	c.2059C>T	c.(2059-2061)CCC>TCC	p.P687S		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	687					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						GCCCATTTATCCCACTCTCCC	0.522													23	27					0	0	0.000295444	0	0
MED23	9439	broad.mit.edu	37	6	131912565	131912565	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:131912565C>T	uc003qcs.1	-	26	3748	c.3574G>A	c.(3574-3576)GAT>AAT	p.D1192N	MED23_uc003qcq.2_Missense_Mutation_p.D1198N|MED23_uc003qcr.1_Missense_Mutation_p.D47N	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	1192					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		GCAGTGAAATCAAAGAGGCGG	0.473													10	39					0	0	0.000673444	0	0
MYB	4602	broad.mit.edu	37	6	135516936	135516936	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:135516936C>T	uc003qfc.2	+	9	1198	c.999C>T	c.(997-999)GCC>GCT	p.A333A	MYB_uc003qfh.2_Silent_p.A333A|MYB_uc003qfi.2_Silent_p.A333A|MYB_uc010kgi.2_Silent_p.A333A|MYB_uc003qfq.2_Silent_p.A330A|MYB_uc010kgj.2_Silent_p.A298A|MYB_uc003qfo.2_Intron|MYB_uc003qfu.2_Silent_p.A330A|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_Intron|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_5'UTR|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_Silent_p.A145A|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Silent_p.A333A|MYB_uc003qge.1_RNA	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	333	Negative regulatory domain (By similarity).				blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		CCACCATTGCCGACCACACCA	0.552			T	NFIB	adenoid cystic carcinoma								12	51					0	0	0.00010058	0	0
MYB	4602	broad.mit.edu	37	6	135521533	135521533	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:135521533C>A	uc003qfc.2	+	12	1766	c.1567C>A	c.(1567-1569)CTG>ATG	p.L523M	MYB_uc003qfh.2_Missense_Mutation_p.L644M|MYB_uc003qfi.2_Missense_Mutation_p.L628M|MYB_uc010kgi.2_Missense_Mutation_p.L523M|MYB_uc003qfq.2_Missense_Mutation_p.L641M|MYB_uc010kgj.2_Missense_Mutation_p.L488M|MYB_uc003qfo.2_Missense_Mutation_p.L438M|MYB_uc003qfu.2_Missense_Mutation_p.L520M|MYB_uc003qfl.2_RNA|MYB_uc003qfv.2_RNA|MYB_uc003qfz.2_RNA|MYB_uc003qfx.2_RNA|MYB_uc003qga.2_RNA|MYB_uc003qgb.2_RNA|MYB_uc010kgk.2_RNA|MYB_uc003qfd.2_RNA|MYB_uc003qfe.2_RNA|MYB_uc003qfg.2_RNA|MYB_uc003qff.2_RNA|MYB_uc003qfj.2_RNA|MYB_uc003qfm.2_RNA|MYB_uc003qfp.2_RNA|MYB_uc003qfn.2_RNA|MYB_uc003qfk.2_RNA|MYB_uc003qfr.2_RNA|MYB_uc003qfs.2_Missense_Mutation_p.L149M|MYB_uc003qft.2_RNA|MYB_uc003qfw.2_Missense_Mutation_p.L335M|MYB_uc003qfy.2_RNA|MYB_uc003qgc.2_RNA|MYB_uc003qfb.1_Missense_Mutation_p.L523M	NM_005375	NP_005366	P10242	MYB_HUMAN	v-myb myeloblastosis viral oncogene homolog	523					blood coagulation|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of histone H3-K4 methylation|positive regulation of histone H3-K9 methylation|positive regulation of T-helper cell differentiation|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear matrix	DNA binding|protein binding			lung(1)	1	all_epithelial(2;0.109)|Breast(56;0.158)|Colorectal(23;0.221)	Lung NSC(302;3.08e-05)|Ovarian(999;0.208)		OV - Ovarian serous cystadenocarcinoma(155;0.0079)|GBM - Glioblastoma multiforme(68;0.0117)		ACCACCCTTACTGAAGAAAAT	0.443			T	NFIB	adenoid cystic carcinoma								18	35					2.35188e-11	2.38877e-10	0.00074312	1	0
BCLAF1	9774	broad.mit.edu	37	6	136599030	136599030	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:136599030G>A	uc003qgx.1	-	4	1242	c.989C>T	c.(988-990)ACT>ATT	p.T330I	BCLAF1_uc003qgw.1_Missense_Mutation_p.T330I|BCLAF1_uc003qgy.1_Missense_Mutation_p.T328I|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.T328I	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	330					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		AGTCTTTGCAGTTTCCTGATC	0.378													5	37					0	0	3.59834e-05	0	0
KIAA1244	57221	broad.mit.edu	37	6	138628449	138628449	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:138628449G>A	uc003qhu.2	+	23	3888	c.3888G>A	c.(3886-3888)TGG>TGA	p.W1296*		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1296					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		AGTCGGGATGGAGACCCTTGT	0.512													40	71					0	0	0.000228196	0	0
SYNE1	23345	broad.mit.edu	37	6	152719759	152719759	+	Missense_Mutation	SNP	G	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:152719759G>C	uc010kiw.2	-	49	7947	c.7345C>G	c.(7345-7347)CTT>GTT	p.L2449V	SYNE1_uc003qot.3_Missense_Mutation_p.L2456V|SYNE1_uc003qou.3_Missense_Mutation_p.L2449V|SYNE1_uc010kjb.1_Missense_Mutation_p.L2432V	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	2449	Spectrin 4.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TATACCTGAAGATCATGGAGC	0.448										HNSCC(10;0.0054)			11	45					0	0	0.000673444	0	0
RSPH3	83861	broad.mit.edu	37	6	159398873	159398873	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:159398873G>A	uc003qrx.2	-	8	1570	c.1380C>T	c.(1378-1380)ATC>ATT	p.I460I	RSPH3_uc010kju.2_Silent_p.I364I	NM_031924	NP_114130	Q86UC2	RSPH3_HUMAN	radial spoke 3 homolog	460								p.I460I(1)		ovary(1)|skin(1)	2		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.36e-16)|BRCA - Breast invasive adenocarcinoma(81;5.92e-06)		CCACCTCACGGATCAACACTG	0.408													53	34					0	0	0.000781405	0	0
KIF25	3834	broad.mit.edu	37	6	168445549	168445549	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:168445549G>A	uc003qwk.1	+	9	1290	c.1028G>A	c.(1027-1029)AGC>AAC	p.S343N	KIF25_uc003qwl.1_Missense_Mutation_p.S291N	NM_030615	NP_085118	Q9UIL4	KIF25_HUMAN	kinesin family member 25 isoform 1	343					microtubule-based movement|mitotic sister chromatid segregation	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			ovary(1)|pancreas(1)	2		Breast(66;1.07e-05)|Ovarian(120;0.0728)		Epithelial(4;7.7e-30)|OV - Ovarian serous cystadenocarcinoma(33;5.82e-22)|BRCA - Breast invasive adenocarcinoma(4;1.38e-10)|GBM - Glioblastoma multiforme(31;0.000756)		ATTTCTCCCAGCCAGAGGCAC	0.552													18	82					0	0	0.000229342	0	0
SDK1	221935	broad.mit.edu	37	7	3990576	3990576	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:3990576C>T	uc003smx.2	+	6	1008	c.869C>T	c.(868-870)ACC>ATC	p.T290I		NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	290					cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		ACACCTGAAACCATGGCCCCA	0.453													13	35					0	0	0.000422831	0	0
SDK1	221935	broad.mit.edu	37	7	4150372	4150372	+	Missense_Mutation	SNP	G	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:4150372G>T	uc003smx.2	+	23	3541	c.3402G>T	c.(3400-3402)GAG>GAT	p.E1134D	SDK1_uc010kso.2_Missense_Mutation_p.E410D	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1134	Fibronectin type-III 5.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		AGATGCTGGAGATCCCAAACC	0.557													20	45					5.45024e-15	5.54934e-14	0.00047179	1	0
ETV1	2115	broad.mit.edu	37	7	13935665	13935665	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:13935665G>A	uc011jxq.1	-	14	1999	c.1260C>T	c.(1258-1260)GCC>GCT	p.A420A	ETV1_uc011jxn.1_Silent_p.A380A|ETV1_uc011jxo.1_Silent_p.A317A|ETV1_uc011jxp.1_Silent_p.A362A|ETV1_uc003ssw.3_Silent_p.A397A|ETV1_uc003ssx.2_RNA|ETV1_uc011jxr.1_Silent_p.A402A|ETV1_uc011jxs.1_Silent_p.A402A	NM_004956	NP_004947	P50549	ETV1_HUMAN	ets variant gene 1 isoform a	420					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity		TMPRSS2/ETV1(24)|EWSR1/ETV1(7)	prostate(24)|soft_tissue(4)|bone(3)|lung(2)|central_nervous_system(1)|ovary(1)	35						TGGAGAAAAGGGCTTCTGGAT	0.483			T	EWSR1|TMPRSS2|SLC45A3|C15orf21|HNRNPA2B1. ACSL3	Ewing sarcoma|prostate								15	16					0	0	0.000566183	0	0
TWIST1	7291	broad.mit.edu	37	7	19156395	19156395	+	Missense_Mutation	SNP	T	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:19156395T>C	uc003sum.2	-	1	901	c.550A>G	c.(550-552)AGC>GGC	p.S184G		NM_000474	NP_000465	Q15672	TWST1_HUMAN	twist	184	Sufficient for transactivation activity (By similarity).				aortic valve morphogenesis|cellular response to hypoxia|embryonic camera-type eye formation|embryonic cranial skeleton morphogenesis|eyelid development in camera-type eye|muscle organ development|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of histone phosphorylation|negative regulation of osteoblast differentiation|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of transcription from RNA polymerase II promoter|positive regulation of angiogenesis|positive regulation of cell motility|positive regulation of epithelial to mesenchymal transition|positive regulation of fatty acid beta-oxidation|positive regulation of monocyte chemotactic protein-1 production|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|positive regulation of tumor necrosis factor production|regulation of bone mineralization	nucleus	bHLH transcription factor binding|E-box binding|sequence-specific DNA binding RNA polymerase II transcription factor activity				0						AAGGCGTAGCTGAGCCGCTCG	0.657									Saethre-Chotzen_syndrome				6	15					0	0	8.12818e-05	0	0
ABCB5	340273	broad.mit.edu	37	7	20683155	20683155	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:20683155C>T	uc010kuh.2	+	7	815	c.578C>T	c.(577-579)TCG>TTG	p.S193L		NM_001163941	NP_001157413	Q2M3G0	ABCB5_HUMAN	ATP-binding cassette, sub-family B, member 5	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					regulation of membrane potential	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus	ATP binding|ATPase activity, coupled to transmembrane movement of substances|efflux transmembrane transporter activity			skin(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)|ovary(1)|pancreas(1)	6						TCTACTTTTTCGATTGGCCTG	0.423													61	114					0	0	0.000781405	0	0
CLK2P	1197	broad.mit.edu	37	7	23625490	23625490	+	Missense_Mutation	SNP	C	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:23625490C>G	uc003swk.2	-	1	657	c.7G>C	c.(7-9)GAC>CAC	p.D3H		NR_002711				SubName: Full=cDNA FLJ61616, highly similar to Dual specificity protein kinase CLK2 (EC 2.7.12.1); SubName: Full=CDC-like kinase 2, isoform CRA_c; SubName: Full=Putative uncharacterized protein CLK2;												0						TCGAACCAGTCAAACATCTGG	0.488													4	20					0	0	0.00024832	0	0
STK31	56164	broad.mit.edu	37	7	23871965	23871965	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:23871965G>A	uc003sws.3	+	24	3107	c.3040G>A	c.(3040-3042)GAA>AAA	p.E1014K	STK31_uc003swt.3_Missense_Mutation_p.E991K|STK31_uc011jze.1_Missense_Mutation_p.E991K|STK31_uc010kuq.2_Missense_Mutation_p.E991K|STK31_uc003swv.1_Intron	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	1014	Protein kinase.						ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						AAGAAATGGTGAAGCCAACTT	0.313													97	113					0	0	0.000781405	0	0
NPY	4852	broad.mit.edu	37	7	24325033	24325033	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:24325033C>T	uc003sww.1	+	2	260	c.174C>T	c.(172-174)CTC>CTT	p.L58L		NM_000905	NP_000896	P01303	NPY_HUMAN	neuropeptide Y precursor	58					adult feeding behavior|calcium ion transport|cell proliferation|cellular component movement|central nervous system neuron development|cerebral cortex development|digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|neuron projection development|neuropeptide signaling pathway|positive regulation of appetite|synaptic transmission	cell|extracellular space	calcium channel regulator activity|G-protein coupled receptor activity|neuropeptide hormone activity				0						ACATCAACCTCATCACCAGGC	0.552													11	12					0	0	0.00010058	0	0
INHBA	3624	broad.mit.edu	37	7	41730107	41730107	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:41730107G>A	uc003thq.2	-	2	657	c.422C>T	c.(421-423)TCC>TTC	p.S141F	INHBA_uc003thr.2_Missense_Mutation_p.S141F	NM_002192	NP_002183	P08476	INHBA_HUMAN	inhibin beta A precursor	141					cell cycle arrest|cell surface receptor linked signaling pathway|defense response|erythrocyte differentiation|eyelid development in camera-type eye|G1/S transition of mitotic cell cycle|growth|hair follicle development|hemoglobin biosynthetic process|hemopoietic progenitor cell differentiation|induction of apoptosis|male gonad development|negative regulation of B cell differentiation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|odontogenesis|ovarian follicle development|palate development|positive regulation of erythrocyte differentiation|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation|positive regulation of transcription from RNA polymerase II promoter|progesterone secretion|regulation of activin receptor signaling pathway	activin A complex|inhibin A complex	cytokine activity|follistatin binding|growth factor activity|hormone activity|identical protein binding|signal transducer activity			lung(5)|ovary(1)	6						GCCTTCCTTGGAAATCTCGAA	0.507										TSP Lung(11;0.080)			15	28					0	0	0.000219431	0	0
WBSCR17	64409	broad.mit.edu	37	7	71177002	71177002	+	Splice_Site	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:71177002G>A	uc003tvy.2	+	11	1669	c.1669_splice	c.e11-1	p.N557_splice	WBSCR17_uc003tvz.2_Splice_Site_p.N256_splice	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide							Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CCCCCTCCCAGAATGGAGCCA	0.368													46	49					0	0	0.000781405	0	0
GTF2IRD2B	389524	broad.mit.edu	37	7	74564144	74564144	+	Missense_Mutation	SNP	C	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:74564144C>A	uc003ubt.2	+	16	2106	c.1891C>A	c.(1891-1893)CTT>ATT	p.L631I	GTF2IRD2B_uc010lcd.2_Missense_Mutation_p.L384I|GTF2IRD2B_uc003ubu.2_Missense_Mutation_p.L461I	NM_001003795	NP_001003795	Q6EKJ0	GTD2B_HUMAN	GTF2I repeat domain containing 2B	631					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						caataacgggcttgtcacaaa	0													9	57					4.36969e-10	4.40584e-09	0.000151284	1	0
PCLO	27445	broad.mit.edu	37	7	82585181	82585181	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:82585181C>T	uc003uhx.2	-	5	5377	c.5088G>A	c.(5086-5088)GAG>GAA	p.E1696E	PCLO_uc003uhv.2_Silent_p.E1696E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1627					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CCAATTCTGGCTCTTCGTCAA	0.428													14	27					0	0	0.000219431	0	0
C7orf43	55262	broad.mit.edu	37	7	99754797	99754797	+	Missense_Mutation	SNP	A	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:99754797A>C	uc003utr.2	-	5	945	c.765T>G	c.(763-765)GAT>GAG	p.D255E	C7orf43_uc010lgo.2_5'Flank|C7orf43_uc010lgp.2_5'UTR|C7orf43_uc011kjj.1_Missense_Mutation_p.D23E|C7orf43_uc003uts.2_5'UTR	NM_018275	NP_060745	Q8WVR3	CG043_HUMAN	hypothetical protein LOC55262	255											0	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GGATTCGGATATCCCAGATGG	0.577													9	23					0	0	0.000274275	0	0
EPO	2056	broad.mit.edu	37	7	100320459	100320459	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:100320459G>A	uc003uwi.2	+	4	600	c.419G>A	c.(418-420)GGA>GAA	p.G140E	EPO_uc011kkc.1_Missense_Mutation_p.G140E	NM_000799	NP_000790	P01588	EPO_HUMAN	erythropoietin precursor	140				G -> R (in Ref. 1; CAA26095).	blood circulation|cellular hyperosmotic response|erythrocyte maturation|negative regulation of apoptosis|negative regulation of ion transmembrane transporter activity|negative regulation of sodium ion transport|positive regulation of cell proliferation|positive regulation of DNA replication|positive regulation of Ras protein signal transduction|positive regulation of transcription, DNA-dependent|positive regulation of tyrosine phosphorylation of Stat5 protein|signal transduction	extracellular space	erythropoietin receptor binding|eukaryotic cell surface binding|hormone activity			central_nervous_system(2)	2	Lung NSC(181;0.041)|all_lung(186;0.0581)				Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	CGGGCTCTGGGAGCCCAGGTG	0.577													7	42					0	0	8.12818e-05	0	0
RELN	5649	broad.mit.edu	37	7	103175777	103175777	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:103175777G>A	uc003vca.2	-	46	7495	c.7335C>T	c.(7333-7335)CTC>CTT	p.L2445L	RELN_uc010liz.2_Silent_p.L2445L	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	2445					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		TATAAGGAGGGAGAGGCAGAG	0.453													9	18					0	0	0.000978159	0	0
ZC3HAV1	56829	broad.mit.edu	37	7	138764305	138764305	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:138764305C>T	uc003vun.2	-	4	1770	c.1382G>A	c.(1381-1383)AGG>AAG	p.R461K	ZC3HAV1_uc003vuo.2_5'Flank|ZC3HAV1_uc003vup.2_Missense_Mutation_p.R461K	NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	461					response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						ATCCTGAATCCTAGGTGATGA	0.438													32	81					0	0	0.000339439	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				19	51					0	0	0.000175454	0	0
MGAM	8972	broad.mit.edu	37	7	141803218	141803218	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:141803218C>T	uc003vwy.2	+	47	5529	c.5475C>T	c.(5473-5475)TTC>TTT	p.F1825F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1825	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CACCCTCCTTCAACAATGACC	0.502													10	15					0	0	0.000978159	0	0
C7orf34	135927	broad.mit.edu	37	7	142637616	142637616	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:142637616G>A	uc003wca.2	+	2	427	c.386G>A	c.(385-387)GGA>GAA	p.G129E		NM_178829	NP_849151	Q96L11	CG034_HUMAN	hypothetical protein LOC135927	104						extracellular region					0	Melanoma(164;0.059)					GTTTTCTCAGGAGGGCCATTG	0.542													53	106					0	0	0.000781405	0	0
ZNF862	643641	broad.mit.edu	37	7	149543277	149543277	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:149543277C>T	uc010lpn.2	+	3	366	c.174C>T	c.(172-174)TTC>TTT	p.F58F	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	58	KRAB 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						TCCGCAAGTTCGGACGAGGGC	0.557													15	27					0	0	0.00074312	0	0
GIMAP8	155038	broad.mit.edu	37	7	150164156	150164156	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr7:150164156G>A	uc003whj.2	+	2	700	c.370G>A	c.(370-372)GAA>AAA	p.E124K		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	124						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		GTTTGGAGCTGAAGCCAGGAG	0.478													23	30					0	0	0.000295444	0	0
PTK2B	2185	broad.mit.edu	37	8	27295002	27295002	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:27295002C>T	uc003xfn.1	+	22	2324	c.1516C>T	c.(1516-1518)CCC>TCC	p.P506S	PTK2B_uc003xfo.1_Missense_Mutation_p.P506S|PTK2B_uc003xfp.1_Missense_Mutation_p.P506S|PTK2B_uc003xfq.1_Missense_Mutation_p.P506S|PTK2B_uc003xfr.1_Missense_Mutation_p.P252S	NM_173174	NP_775266	Q14289	FAK2_HUMAN	PTK2B protein tyrosine kinase 2 beta isoform a	506	Protein kinase.				apoptosis|bone resorption|positive regulation of cell proliferation|signal complex assembly	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|signal transducer activity			lung(3)|ovary(1)|skin(1)	5		Ovarian(32;2.72e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|Epithelial(17;6.61e-10)|BRCA - Breast invasive adenocarcinoma(99;0.226)|Colorectal(74;0.229)		GGAATTGTATCCCTATGGGGA	0.562													12	14					0	0	0.000219431	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228744	57228744	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:57228744G>A	uc003xsy.1	-	2	801	c.163C>T	c.(163-165)CTC>TTC	p.L55F	SDR16C5_uc010lyk.1_Missense_Mutation_p.L55F|SDR16C5_uc010lyl.1_Missense_Mutation_p.L55F	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	55	NAD or NADP (By similarity).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AAGGCTAAGAGCCTTCCGAGT	0.502													26	38					0	0	0.00047179	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228829	57228829	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:57228829C>T	uc003xsy.1	-	2	716	c.78G>A	c.(76-78)ATG>ATA	p.M26I	SDR16C5_uc010lyk.1_Missense_Mutation_p.M26I|SDR16C5_uc010lyl.1_Missense_Mutation_p.M26I	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	26	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						AGGCAAAAATCATAGCCTCCA	0.448													22	32					0	0	0.000295444	0	0
PREX2	80243	broad.mit.edu	37	8	68995569	68995569	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:68995569C>T	uc003xxv.1	+	18	2000	c.1973C>T	c.(1972-1974)TCG>TTG	p.S658L	PREX2_uc003xxu.1_Missense_Mutation_p.S658L|PREX2_uc011lez.1_Missense_Mutation_p.S593L	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	658	PDZ 1.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTCCTGAAATCGTGTTTAAAC	0.353													31	42					0	0	0.000692331	0	0
RGS22	26166	broad.mit.edu	37	8	101014456	101014456	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:101014456G>A	uc003yjb.1	-	18	2959	c.2764C>T	c.(2764-2766)CCA>TCA	p.P922S	RGS22_uc003yja.1_Missense_Mutation_p.P741S|RGS22_uc003yjc.1_Missense_Mutation_p.P910S|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	922	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			AGAGAAGCTGGACTGTTGGGT	0.323													19	45					0	0	0.000295444	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110509206	110509206	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:110509206G>A	uc003yne.2	+	64	10490	c.10386G>A	c.(10384-10386)GGG>GGA	p.G3462G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3462	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GTTTATATGGGATCTATATGA	0.383										HNSCC(38;0.096)			50	64					0	0	0.000781405	0	0
FAM83A	84985	broad.mit.edu	37	8	124195541	124195541	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:124195541G>A	uc003ypv.2	+	2	2459	c.445G>A	c.(445-447)GAC>AAC	p.D149N	FAM83A_uc003ypw.2_Missense_Mutation_p.D149N|FAM83A_uc003ypy.2_Missense_Mutation_p.D149N|FAM83A_uc003ypx.2_Missense_Mutation_p.D149N|FAM83A_uc003ypz.2_Missense_Mutation_p.D149N	NM_032899	NP_116288	Q86UY5	FA83A_HUMAN	hypothetical protein LOC84985 isoform a	149										ovary(3)|skin(1)	4	Lung NSC(37;1.55e-09)|Ovarian(258;0.0205)		STAD - Stomach adenocarcinoma(47;0.00527)			CAACATCAGAGACCTCGTCCG	0.597													20	35					0	0	0.000958276	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141661	133141661	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:133141661C>T	uc003ytj.2	-	15	2692	c.2467G>A	c.(2467-2469)GGG>AGG	p.G823R	KCNQ3_uc010mdt.2_Missense_Mutation_p.G811R|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	823					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			CAGCTCGACCCCCCATTGGGG	0.612													19	29					0	0	0.000132079	0	0
KCNK9	51305	broad.mit.edu	37	8	140631316	140631316	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:140631316C>T	uc003yvf.1	-	2	374	c.310G>A	c.(310-312)GAT>AAT	p.D104N	KCNK9_uc003yvg.1_Missense_Mutation_p.D104N|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	104	Extracellular (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			TTGCCCGCATCGGTGCCAGGT	0.612													8	20					0	0	0.000274275	0	0
DENND3	22898	broad.mit.edu	37	8	142146806	142146807	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr8:142146806_142146807GG>AA	uc003yvy.2	+	2	339_340	c.61_62GG>AA	c.(61-63)GGG>AAG	p.G21K	DENND3_uc003yvw.1_Missense_Mutation_p.G34K|DENND3_uc003yvx.2_Missense_Mutation_p.G101K|DENND3_uc010mep.2_Missense_Mutation_p.G34K	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	21	UDENN.									ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			GGGCCTCCCGGGGCCCCCCAGA	0.653													4	9					0	0	6.4e-05	0	0
SMARCA2	6595	broad.mit.edu	37	9	2039779	2039779	+	Silent	SNP	G	A	A	rs62639301	byFrequency	TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:2039779G>A	uc003zhc.2	+	4	768	c.669G>A	c.(667-669)CAG>CAA	p.Q223Q	SMARCA2_uc003zhd.2_Silent_p.Q223Q|SMARCA2_uc010mha.2_Silent_p.Q214Q	NM_003070	NP_003061	P51531	SMCA2_HUMAN	SWI/SNF-related matrix-associated	223	Poly-Gln.				chromatin remodeling|negative regulation of cell growth|negative regulation of transcription from RNA polymerase II promoter|nervous system development	intermediate filament cytoskeleton|nBAF complex|npBAF complex|nuclear chromatin|nucleoplasm|SWI/SNF complex|WINAC complex	ATP binding|DNA-dependent ATPase activity|helicase activity|protein binding|RNA polymerase II transcription coactivator activity|transcription regulatory region DNA binding			ovary(2)|central_nervous_system(1)	3		all_lung(10;2.06e-09)|Lung NSC(10;2.43e-09)		GBM - Glioblastoma multiforme(50;0.0475)		agcagcaacagcagcagcagc	0.274													3	13					0	0	6.4e-05	0	0
RCL1	10171	broad.mit.edu	37	9	4826983	4826983	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:4826983C>T	uc003zis.2	+	3	592	c.334C>T	c.(334-336)CCG>TCG	p.P112S	RCL1_uc003zit.2_Intron|RCL1_uc010mhk.1_Intron	NM_005772	NP_005763	Q9Y2P8	RCL1_HUMAN	RNA terminal phosphate cyclase-like 1	112					ribosome biogenesis|RNA processing	nucleolus	RNA-3'-phosphate cyclase activity				0	all_hematologic(13;0.137)	Acute lymphoblastic leukemia(23;0.0206)|Breast(48;0.147)		GBM - Glioblastoma multiforme(50;0.0244)		TATGAAGCACCCGTTAAAAAT	0.453													41	42					0	0	0.000228196	0	0
RANBP6	26953	broad.mit.edu	37	9	6013286	6013286	+	Silent	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:6013286G>A	uc003zjr.2	-	1	2333	c.2322C>T	c.(2320-2322)CTC>CTT	p.L774L	RANBP6_uc011lmf.1_Silent_p.L422L|RANBP6_uc003zjs.2_Silent_p.L362L	NM_012416	NP_036548	O60518	RNBP6_HUMAN	RAN binding protein 6	774					protein transport	cytoplasm|nucleus	binding			ovary(3)	3		Acute lymphoblastic leukemia(23;0.158)		GBM - Glioblastoma multiforme(50;0.00522)|Lung(218;0.101)		TTATTTCTGAGAGCACATCTG	0.413													16	65					0	0	0.000566183	0	0
TAF1L	138474	broad.mit.edu	37	9	32633448	32633448	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:32633448C>T	uc003zrg.1	-	1	2220	c.2130G>A	c.(2128-2130)ATG>ATA	p.M710I	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	710					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CAACCTGCATCATTAAGGGTC	0.418													46	52					0	0	0.000781405	0	0
AQP3	360	broad.mit.edu	37	9	33442339	33442339	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:33442339G>A	uc003zsx.2	-	5	732	c.670C>T	c.(670-672)CTT>TTT	p.L224F	SUGT1P1_uc010mjq.1_Intron|AQP3_uc003zsv.1_3'UTR|AQP3_uc003zsw.2_Missense_Mutation_p.L68F|AQP3_uc010mju.2_Intron	NM_004925	NP_004916	Q92482	AQP3_HUMAN	aquaporin 3	224	Extracellular (Potential).				excretion|odontogenesis|positive regulation of immune system process|regulation of keratinocyte differentiation|response to calcium ion|response to retinoic acid|response to vitamin D	basolateral plasma membrane|cell-cell junction|cytoplasm	glycerol channel activity|water channel activity				0			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.0899)		GCTGTAAAAAGGCGGGGGCCA	0.662													15	9					0	0	0.00074312	0	0
VCP	7415	broad.mit.edu	37	9	35061054	35061055	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:35061054_35061055GG>AA	uc003zvy.2	-	11	1705_1706	c.1316_1317CC>TT	c.(1315-1317)GCC>GTT	p.A439V	VCP_uc003zvz.2_RNA|VCP_uc010mkh.1_Missense_Mutation_p.A108V|VCP_uc010mki.1_Missense_Mutation_p.A394V	NM_007126	NP_009057	P55072	TERA_HUMAN	valosin-containing protein	439					activation of caspase activity|double-strand break repair|endoplasmic reticulum unfolded protein response|ER-associated protein catabolic process|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein ubiquitination|retrograde protein transport, ER to cytosol	cytosol|endoplasmic reticulum|microsome|nucleus|proteasome complex	ATP binding|ATPase activity|lipid binding|polyubiquitin binding|protein domain specific binding|protein phosphatase binding			upper_aerodigestive_tract(1)	1			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TCATGACCTCGGCATCAATGGT	0.53													36	116					0	0	6.4e-05	0	0
GNE	10020	broad.mit.edu	37	9	36233983	36233983	+	Nonsense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:36233983G>A	uc010mlh.2	-	5	1131	c.916C>T	c.(916-918)CGA>TGA	p.R306*	CLTA_uc003zzf.1_Intron|GNE_uc010mlg.2_Nonsense_Mutation_p.R306*|GNE_uc011lpl.1_Nonsense_Mutation_p.R196*|GNE_uc010mli.2_Nonsense_Mutation_p.R337*|GNE_uc010mlj.2_Nonsense_Mutation_p.R301*	NM_005476	NP_005467	Q9Y223	GLCNE_HUMAN	UDP-N-acetylglucosamine-2-epimerase/N-	306	UDP-N-acetylglucosamine 2-epimerase.		R -> Q (in NM).		cell adhesion|lipopolysaccharide biosynthetic process|N-acetylneuraminate metabolic process|UDP-N-acetylglucosamine metabolic process		ATP binding|N-acylmannosamine kinase activity|UDP-N-acetylglucosamine 2-epimerase activity				0			STAD - Stomach adenocarcinoma(86;0.228)			CCAACTTCTCGAACCCCACAG	0.463													73	66					0	0	0.000781405	0	0
LOC442421	442421	broad.mit.edu	37	9	66499794	66499794	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:66499794C>T	uc004aee.1	+	1	604	c.604C>T	c.(604-606)CGC>TGC	p.R202C	LOC442421_uc004aed.1_RNA					Homo sapiens hypothetical LOC442421, mRNA (cDNA clone IMAGE:40031134).												0						GTGCAAGTCGCGCAAGGAGCA	0.587													7	53					0	0	0.00010058	0	0
Unknown	0	broad.mit.edu	37	9	68728861	68728861	+	RNA	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:68728861G>A	uc004aez.1	+	3		c.702G>A			uc004afa.1_RNA|uc010mnp.1_RNA					Homo sapiens cDNA, FLJ18209.																		gcaaagataagaagagaaaaa	0.209													8	49					0	0	0.000442599	0	0
MAMDC2	256691	broad.mit.edu	37	9	72723222	72723222	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:72723222C>T	uc004ahm.2	+	3	861	c.244C>T	c.(244-246)CGT>TGT	p.R82C	MAMDC2_uc004ahn.2_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	82	MAM 1.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						GAGCTGCCTCCGTTTGGTCTA	0.493													25	6					0	0	0.000878237	0	0
TRPM6	140803	broad.mit.edu	37	9	77407629	77407629	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:77407629C>T	uc004ajl.1	-	19	2687	c.2449G>A	c.(2449-2451)GGT>AGT	p.G817S	TRPM6_uc004ajk.1_Missense_Mutation_p.G812S|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	817	Extracellular (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CTTTCCAAACCAAAATGCTGA	0.388													26	13					0	0	0.000878237	0	0
KIF12	113220	broad.mit.edu	37	9	116857517	116857517	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:116857517C>T	uc004bif.2	-	7	815	c.577G>A	c.(577-579)GGA>AGA	p.G193R	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	326					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CCGCGCCCTCCCAGTGAGTCT	0.642													31	13					0	0	0.00111076	0	0
ABL1	25	broad.mit.edu	37	9	133747600	133747600	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:133747600G>A	uc004bzw.2	+	5	910	c.907G>A	c.(907-909)GGG>AGG	p.G303R	ABL1_uc004bzv.2_Missense_Mutation_p.G322R	NM_005157	NP_005148	P00519	ABL1_HUMAN	c-abl oncogene 1, receptor tyrosine kinase	303	Protein kinase.				actin cytoskeleton organization|axon guidance|blood coagulation|cell adhesion|DNA damage induced protein phosphorylation|DNA damage response, signal transduction resulting in induction of apoptosis|mismatch repair|muscle cell differentiation|negative regulation of protein serine/threonine kinase activity|peptidyl-tyrosine phosphorylation|positive regulation of muscle cell differentiation|positive regulation of oxidoreductase activity|regulation of transcription involved in S phase of mitotic cell cycle	cytoskeleton|cytosol|nuclear membrane|nucleolus|perinuclear region of cytoplasm	ATP binding|DNA binding|magnesium ion binding|manganese ion binding|mitogen-activated protein kinase binding|non-membrane spanning protein tyrosine kinase activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding			haematopoietic_and_lymphoid_tissue(807)|lung(5)|stomach(2)|central_nervous_system(1)|breast(1)|skin(1)	817		all_hematologic(13;0.0361)|Acute lymphoblastic leukemia(5;0.0543)|Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.4e-05)	Adenosine triphosphate(DB00171)|Dasatinib(DB01254)|Imatinib(DB00619)	GCAGCTCCTTGGTGAGTAAGC	0.572			T|Mis	BCR|ETV6|NUP214	CML|ALL|T-ALL								6	7					0	0	8.12818e-05	0	0
FCN2	2220	broad.mit.edu	37	9	137778365	137778365	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:137778365G>A	uc004cfg.1	+	7	659	c.649G>A	c.(649-651)GAG>AAG	p.E217K	FCN2_uc004cfh.1_Missense_Mutation_p.E179K	NM_004108	NP_004099	Q15485	FCN2_HUMAN	ficolin 2 isoform a precursor	217	Fibrinogen C-terminal.				complement activation, lectin pathway|opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|calcium-dependent protein binding|receptor binding|sugar binding			large_intestine(1)	1		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.58e-08)|Epithelial(140;6.41e-08)|all cancers(34;3.96e-07)		CGACGAGGCGGAGAAGTACAA	0.572													39	13					0	0	0.00111076	0	0
MXRA5	25878	broad.mit.edu	37	X	3241141	3241141	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:3241141C>T	uc004crg.3	-	5	2742	c.2585G>A	c.(2584-2586)AGC>AAC	p.S862N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	862						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TAGCCCCATGCTGGCTGAGGA	0.473													40	4					0	0	0.000270559	0	0
PDK3	5165	broad.mit.edu	37	X	24521592	24521592	+	Missense_Mutation	SNP	A	G	G			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:24521592A>G	uc004dbg.2	+	4	698	c.469A>G	c.(469-471)AAC>GAC	p.N157D	PDK3_uc004dbh.2_Missense_Mutation_p.N157D	NM_005391	NP_005382	Q15120	PDK3_HUMAN	pyruvate dehydrogenase kinase 3 isoform 2	157	Histidine kinase.				glucose metabolic process|peptidyl-histidine phosphorylation|pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	ATP binding|protein binding|pyruvate dehydrogenase (acetyl-transferring) kinase activity|two-component sensor activity			lung(4)|upper_aerodigestive_tract(1)|ovary(1)	6						GTTTTATACCAACCGCATCTC	0.383													22	11					0	0	0.000295444	0	0
USP9X	8239	broad.mit.edu	37	X	41000634	41000634	+	Nonsense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:41000634C>T	uc004dfb.2	+	9	1744	c.1111C>T	c.(1111-1113)CGA>TGA	p.R371*	USP9X_uc004dfc.2_Nonsense_Mutation_p.R371*	NM_001039590	NP_001034679	Q93008	USP9X_HUMAN	ubiquitin specific protease 9, X-linked isoform	371					BMP signaling pathway|cell division|chromosome segregation|female gamete generation|mitosis|protein deubiquitination|transforming growth factor beta receptor signaling pathway|ubiquitin-dependent protein catabolic process	cytoplasm	co-SMAD binding|cysteine-type endopeptidase activity|ubiquitin thiolesterase activity			lung(3)|breast(2)|ovary(1)	6						CTATACTCATCGACATGGTAA	0.358													6	3					0	0	3.59834e-05	0	0
DDX3X	1654	broad.mit.edu	37	X	41204721	41204721	+	Missense_Mutation	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:41204721C>T	uc004dfe.2	+	12	2090	c.1235C>T	c.(1234-1236)TCT>TTT	p.S412F	DDX3X_uc004dff.2_Missense_Mutation_p.S412F|DDX3X_uc011mkq.1_Missense_Mutation_p.S396F|DDX3X_uc011mkr.1_Intron|DDX3X_uc011mks.1_Intron|DDX3X_uc004dfg.2_RNA|DDX3X_uc011mkt.1_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	412	Necessary for interaction with XPO1.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						GGCTCTACCTCTGAAAACATC	0.353										HNSCC(61;0.18)			40	13					0	0	0.000781405	0	0
MAGED1	9500	broad.mit.edu	37	X	51638164	51638164	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:51638164G>A	uc004dpm.2	+	3	156	c.61G>A	c.(61-63)GAA>AAA	p.E21K	MAGED1_uc004dpn.2_Missense_Mutation_p.E77K|MAGED1_uc004dpo.2_Missense_Mutation_p.E21K|MAGED1_uc011mnx.1_Missense_Mutation_p.E21K	NM_001005332	NP_001005332	Q9Y5V3	MAGD1_HUMAN	melanoma antigen family D, 1 isoform b	21					apoptosis|induction of apoptosis by extracellular signals|negative regulation of epithelial cell proliferation|nerve growth factor receptor signaling pathway|regulation of transcription, DNA-dependent	cytoplasm|plasma membrane|protein complex	protein binding			ovary(3)	3	Ovarian(276;0.236)					GGCCTCCGTAGAAGACAGCGC	0.592										Multiple Myeloma(10;0.10)			15	2					0	0	0.000308642	0	0
FOXR2	139628	broad.mit.edu	37	X	55650514	55650514	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:55650514G>A	uc004duo.2	+	1	682	c.370G>A	c.(370-372)GAG>AAG	p.E124K		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	124					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						TAACTGCTCAGAGGACAAAGT	0.517													12	1					0	0	0.00010058	0	0
LRCH2	57631	broad.mit.edu	37	X	114357343	114357343	+	Missense_Mutation	SNP	G	A	A			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:114357343G>A	uc010nqe.2	-	19	2111	c.2080C>T	c.(2080-2082)CAT>TAT	p.H694Y	LRCH2_uc004epz.2_Missense_Mutation_p.H677Y	NM_020871	NP_065922	Q5VUJ6	LRCH2_HUMAN	leucine-rich repeats and calponin homology (CH)	694	CH.									ovary(1)	1						GATGGTACATGAATACTAGCA	0.358													26	6					0	0	0.000184323	0	0
CXorf48	54967	broad.mit.edu	37	X	134292130	134292130	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:134292130C>T	uc004eyk.1	-	4	1187	c.531G>A	c.(529-531)ACG>ACA	p.T177T	CXorf48_uc004eyl.1_Silent_p.T177T	NM_001031705	NP_001026875	Q8WUE5	CX048_HUMAN	hypothetical protein LOC54967 isoform 1	177											0	Acute lymphoblastic leukemia(192;0.000127)					TTACCTCTTCCGTATGAATAC	0.433													17	7					0	0	0.000566183	0	0
GPR112	139378	broad.mit.edu	37	X	135427956	135427956	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:135427956C>T	uc004ezu.1	+	6	2382	c.2091C>T	c.(2089-2091)TCC>TCT	p.S697S	GPR112_uc010nsb.1_Silent_p.S492S|GPR112_uc010nsc.1_Silent_p.S464S	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	697	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AATATTTATCCGCAACTACCA	0.398													24	2					0	0	0.00047179	0	0
CDR1	1038	broad.mit.edu	37	X	139866304	139866304	+	Silent	SNP	C	T	T			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chrX:139866304C>T	uc004fbg.1	-	1	420	c.228G>A	c.(226-228)AGG>AGA	p.R76R	uc004fbf.1_RNA	NM_004065	NP_004056	P51861	CDR1_HUMAN	cerebellar degeneration-related protein 1,	76	23 X 6 AA approximate repeats.|13.										0	Acute lymphoblastic leukemia(192;7.65e-05)	Lung SC(4;0.051)				CCTTGTCTTCCCTCAAATCCA	0.463													19	6					0	0	0.000132079	0	0
PRPF40B	25766	broad.mit.edu	37	12	50025257	50025258	+	Frame_Shift_Ins	INS	-	C	C			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr12:50025257_50025258insC	uc001rur.1	+	2	156_157	c.92_93insC	c.(91-93)ATCfs	p.I31fs	PRPF40B_uc001rup.1_Frame_Shift_Ins_p.I53fs|PRPF40B_uc001ruq.1_Frame_Shift_Ins_p.I25fs|PRPF40B_uc001rus.1_5'Flank	NM_001031698	NP_001026868	Q6NWY9	PR40B_HUMAN	Huntingtin interacting protein C isoform 1	31	Pro-rich.				mRNA processing|RNA splicing	nuclear speck				skin(2)|ovary(1)|pancreas(1)|kidney(1)	5						CCACCAGCTATCCCCCCCATGC	0.604													18	72	---	---	---	---					
LRRK1	79705	broad.mit.edu	37	15	101562697	101562697	+	Frame_Shift_Del	DEL	C	-	-			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr15:101562697delC	uc002bwr.2	+	15	2281	c.1962delC	c.(1960-1962)CTCfs	p.L654fs	LRRK1_uc010usb.1_RNA|LRRK1_uc010usc.1_Intron	NM_024652	NP_078928	Q38SD2	LRRK1_HUMAN	leucine-rich repeat kinase 1	654	Roc.				small GTPase mediated signal transduction	mitochondrion	ATP binding|GTP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|lung(4)|central_nervous_system(3)|large_intestine(1)	12	Melanoma(26;0.00505)|Lung NSC(78;0.00793)|all_lung(78;0.0094)		OV - Ovarian serous cystadenocarcinoma(32;0.000932)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			AGTCCACCCTCCTGGAGATCT	0.622													15	91	---	---	---	---					
HIPK4	147746	broad.mit.edu	37	19	40886647	40886649	+	In_Frame_Del	DEL	CTC	-	-			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr19:40886647_40886649delCTC	uc002onp.2	-	3	1534_1536	c.1249_1251delGAG	c.(1249-1251)GAGdel	p.E417del		NM_144685	NP_653286	Q8NE63	HIPK4_HUMAN	homeodomain interacting protein kinase 4	417						cytoplasm	ATP binding|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2			Lung(22;4.95e-05)|LUSC - Lung squamous cell carcinoma(20;0.000292)			CTGGTGCCTTCTCCTCTCGGAAG	0.626													17	57	---	---	---	---					
GLT8D1	55830	broad.mit.edu	37	3	52731861	52731877	+	Frame_Shift_Del	DEL	CCACAGGAATCTCCTCT	-	-			TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr3:52731861_52731877delCCACAGGAATCTCCTCT	uc003dfi.3	-	4	328_344	c.189_205delAGAGGAGATTCCTGTGG	c.(187-207)CAAGAGGAGATTCCTGTGGTCfs	p.Q63fs	GLT8D1_uc003dfj.2_Frame_Shift_Del_p.Q63fs|GLT8D1_uc003dfk.2_Frame_Shift_Del_p.Q63fs|GLT8D1_uc003dfl.2_Frame_Shift_Del_p.Q63fs|GLT8D1_uc003dfm.2_Frame_Shift_Del_p.Q63fs|GLT8D1_uc003dfn.2_Frame_Shift_Del_p.Q63fs|GLT8D1_uc003dfo.1_Frame_Shift_Del_p.Q63fs	NM_152932	NP_690909	Q68CQ7	GL8D1_HUMAN	glycosyltransferase 8 domain containing 1	63_69	Lumenal (Potential).					integral to membrane|mitochondrion	transferase activity, transferring glycosyl groups				0				BRCA - Breast invasive adenocarcinoma(193;6.78e-05)|Kidney(197;0.000618)|KIRC - Kidney renal clear cell carcinoma(197;0.000779)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		GCAGCGATGACCACAGGAATCTCCTCTTGTCTCCCAT	0.470													14	62	---	---	---	---					
C6orf223	221416	broad.mit.edu	37	6	43970504	43970509	+	In_Frame_Del	DEL	GCGGCG	-	-	rs72369323		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr6:43970504_43970509delGCGGCG	uc003own.2	+	4	388_393	c.370_375delGCGGCG	c.(370-375)GCGGCGdel	p.AA130del	uc003owm.1_Intron|C6orf223_uc003owo.2_In_Frame_Del_p.AA110del	NM_153246	NP_694978	Q8N319	CF223_HUMAN	hypothetical protein LOC221416	130_131	Ala-rich.										0	all_cancers(18;2.28e-07)|all_epithelial(2;1.62e-08)|Lung NSC(15;0.000172)|all_lung(25;0.000533)|Hepatocellular(11;0.00309)|Ovarian(13;0.0437)		all cancers(41;0.00141)|Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.217)			GGTAGAGCGCgcggcggcggcggcgg	0.636													5	11	---	---	---	---					
NFIB	4781	broad.mit.edu	37	9	14146714	14146714	+	Frame_Shift_Del	DEL	C	-	-	rs144909299		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:14146714delC	uc003zle.2	-	6	1334	c.899delG	c.(898-900)AGTfs	p.S300fs	NFIB_uc003zld.2_Frame_Shift_Del_p.S48fs|NFIB_uc003zlf.2_Frame_Shift_Del_p.S300fs|NFIB_uc011lmo.1_Frame_Shift_Del_p.S300fs	NM_005596	NP_005587	O00712	NFIB_HUMAN	nuclear factor I/B	300					anterior commissure morphogenesis|chondrocyte differentiation|Clara cell differentiation|commissural neuron axon guidance|DNA replication|glial cell differentiation|lung ciliated cell differentiation|negative regulation of DNA binding|negative regulation of epithelial cell proliferation involved in lung morphogenesis|negative regulation of mesenchymal cell proliferation involved in lung development|positive regulation of transcription from RNA polymerase II promoter|principal sensory nucleus of trigeminal nerve development|Type I pneumocyte differentiation|Type II pneumocyte differentiation	cerebellar mossy fiber|nucleolus|nucleus	RNA polymerase II transcription corepressor activity|sequence-specific DNA binding RNA polymerase II transcription factor activity				0				GBM - Glioblastoma multiforme(50;4.4e-08)|LUAD - Lung adenocarcinoma(58;0.119)|Lung(218;0.164)		CCATGTTCGACTTCCAGCAGC	0.413			T	MYB|HGMA2	adenoid cystic carcinoma|lipoma								18	32	---	---	---	---					
TRPM6	140803	broad.mit.edu	37	9	77455061	77455062	+	Frame_Shift_Del	DEL	TG	-	-	rs121912625		TCGA-D9-A148-06A-11D-A19A-08	TCGA-D9-A148-10A-01D-A19A-08									Somatic	Phase_I	Capture				Illumina GAIIx	d7e884b1-ab8a-4225-9fc9-a2a6fd8f4660	b036b9bb-f047-427a-bd1f-7bdec7c15002	g.chr9:77455061_77455062delTG	uc004ajl.1	-	5	660_661	c.422_423delCA	c.(421-423)TCAfs	p.S141fs	TRPM6_uc004ajk.1_Frame_Shift_Del_p.S136fs|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Frame_Shift_Del_p.S141fs|TRPM6_uc010mpd.1_Frame_Shift_Del_p.S141fs|TRPM6_uc010mpe.1_Frame_Shift_Del_p.S141fs|TRPM6_uc004ajn.1_Frame_Shift_Del_p.S141fs	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	141	Cytoplasmic (Potential).		S -> L (in HOMG1; impairs heterodimer formation resulting in intracellular retention).		response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CCCCATGGACTGAGATCACAAG	0.391													11	22	---	---	---	---					
