Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
PGD	5226	broad.mit.edu	37	1	10468150	10468150	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:10468150C>T	uc001arc.2	+	6	562	c.472C>T	c.(472-474)CAA>TAA	p.Q158*	PGD_uc001ard.2_Silent_p.S76S|PGD_uc010oak.1_Nonsense_Mutation_p.Q136*|PGD_uc010oal.1_Nonsense_Mutation_p.Q145*	NM_002631	NP_002622	P52209	6PGD_HUMAN	phosphogluconate dehydrogenase	158					pentose-phosphate shunt, oxidative branch	cytosol	NADP binding|phosphogluconate dehydrogenase (decarboxylating) activity|protein binding			ovary(1)	1	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.19e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(132;0.00832)|READ - Rectum adenocarcinoma(331;0.0487)		GACCATCTTCCAAGGCATTGC	0.498													17	99					0	0	0.00074312	0	0
SRM	6723	broad.mit.edu	37	1	11115859	11115859	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:11115859G>A	uc001arz.1	-	6	835	c.744C>T	c.(742-744)TTC>TTT	p.F248F	SRM_uc001ary.1_Silent_p.F109F	NM_003132	NP_003123	P19623	SPEE_HUMAN	spermidine synthase	248					spermidine biosynthetic process	cytosol	protein homodimerization activity|spermidine synthase activity				0	Ovarian(185;0.249)	Lung NSC(185;1.74e-05)|all_lung(284;2.05e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.228)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.14e-07)|COAD - Colon adenocarcinoma(227;7.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)	S-Adenosylmethionine(DB00118)|Spermine(DB00127)	TGCACAGCATGAAGCCGATCT	0.582													4	3					0	0	0.00024832	0	0
VPS13D	55187	broad.mit.edu	37	1	12368617	12368617	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:12368617C>T	uc001atv.2	+	27	6710	c.6569C>T	c.(6568-6570)TCC>TTC	p.S2190F	VPS13D_uc001atw.2_Missense_Mutation_p.S2190F|VPS13D_uc001atx.2_Missense_Mutation_p.S1378F|VPS13D_uc001aty.1_5'Flank	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2190					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		ATCTTCCCTTCCTATTTTGTG	0.463													28	108					0	0	0.000409698	0	0
TMEM51	55092	broad.mit.edu	37	1	15546075	15546075	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:15546075C>T	uc001avw.3	+	4	1117	c.598C>T	c.(598-600)CCG>TCG	p.P200S	TMEM51_uc010obk.1_Missense_Mutation_p.P200S|TMEM51_uc001avz.2_3'UTR|TMEM51_uc001avy.2_Missense_Mutation_p.P200S|TMEM51_uc001avx.2_Missense_Mutation_p.P200S	NM_001136216	NP_001129688	Q9NW97	TMM51_HUMAN	transmembrane protein 51	200						integral to membrane					0		Renal(390;0.00145)|Breast(348;0.00186)|Colorectal(325;0.00215)|all_lung(284;0.00459)|Lung NSC(340;0.0104)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0265)|Colorectal(212;2.07e-06)|COAD - Colon adenocarcinoma(227;7.14e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000175)|KIRC - Kidney renal clear cell carcinoma(229;0.00141)|STAD - Stomach adenocarcinoma(313;0.00644)|READ - Rectum adenocarcinoma(331;0.0751)		ACGACTGAAACCGCTGAAAGT	0.537													29	33					0	0	0.00127121	0	0
DNAJC16	23341	broad.mit.edu	37	1	15892468	15892468	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:15892468C>T	uc001aws.2	+	12	1773	c.1653C>T	c.(1651-1653)TTC>TTT	p.F551F	DNAJC16_uc001awr.1_Silent_p.F551F|DNAJC16_uc001awt.2_Silent_p.F239F|DNAJC16_uc001awu.2_RNA	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	551	Helical; Anchor for type IV membrane protein; (Potential).				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		TCATCCTCTTCGGCACTGTCA	0.428													151	249					0	0	0.000781405	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18808853	18808853	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:18808853G>A	uc001bax.2	+	1	1430	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K	KLHDC7A_uc009vpg.2_Missense_Mutation_p.E242K	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	460						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGTGATGAGCGAAAACTACCT	0.642													27	31					0	0	0.000878237	0	0
EPHA8	2046	broad.mit.edu	37	1	22923821	22923821	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:22923821C>T	uc001bfx.1	+	10	1907	c.1782C>T	c.(1780-1782)TTC>TTT	p.F594F		NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	594	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		CACCTGTCTTCCTGCCTCTGC	0.657													12	19					0	0	0.00136819	0	0
E2F2	1870	broad.mit.edu	37	1	23836608	23836608	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:23836608G>A	uc001bhe.1	-	7	1506	c.1078C>T	c.(1078-1080)CCA>TCA	p.P360S		NM_004091	NP_004082	Q14209	E2F2_HUMAN	E2F transcription factor 2	360	Poly-Pro.|Transactivation (Potential).				G1 phase of mitotic cell cycle|transcription initiation from RNA polymerase II promoter	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding			ovary(2)|skin(2)	4		Colorectal(325;3.46e-05)|Lung NSC(340;4.15e-05)|all_lung(284;6.64e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00539)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;1.52e-24)|Colorectal(126;6.25e-08)|COAD - Colon adenocarcinoma(152;3.42e-06)|GBM - Glioblastoma multiforme(114;8.98e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00102)|KIRC - Kidney renal clear cell carcinoma(1967;0.00366)|STAD - Stomach adenocarcinoma(196;0.0132)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.0888)|LUSC - Lung squamous cell carcinoma(448;0.19)		GGAGGCGGTGGGGCCTGCTGG	0.642													10	9					0	0	0.000442599	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26885418	26885418	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:26885418C>T	uc001bmr.1	+	14	1368	c.1205C>T	c.(1204-1206)TCG>TTG	p.S402L	RPS6KA1_uc010ofe.1_Missense_Mutation_p.S310L|RPS6KA1_uc010off.1_Missense_Mutation_p.S386L|RPS6KA1_uc001bms.1_Missense_Mutation_p.S411L|RPS6KA1_uc009vsl.1_Missense_Mutation_p.S245L	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	402					axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		CCCCTGCACTCGGTGGTACAG	0.612													11	18					0	0	0.00136819	0	0
MECR	51102	broad.mit.edu	37	1	29533276	29533276	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:29533276G>A	uc001brq.1	-	4	584	c.548C>T	c.(547-549)CCA>CTA	p.P183L	MECR_uc001brp.1_Missense_Mutation_p.P107L|MECR_uc001brr.1_Missense_Mutation_p.P107L|MECR_uc001brs.1_RNA|MECR_uc001brt.1_Missense_Mutation_p.P107L|MECR_uc010ofz.1_Missense_Mutation_p.P183L	NM_016011	NP_057095	Q9BV79	MECR_HUMAN	trans-2-enoyl-CoA reductase, mitochondrial	183					fatty acid biosynthetic process	mitochondrion	trans-2-enoyl-CoA reductase (NADPH) activity|zinc ion binding			ovary(1)	1		Colorectal(325;0.000389)|Breast(348;0.00765)|Lung NSC(340;0.0081)|all_lung(284;0.00914)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.39e-07)|COAD - Colon adenocarcinoma(152;2.04e-05)|STAD - Stomach adenocarcinoma(196;0.0195)|BRCA - Breast invasive adenocarcinoma(304;0.053)|READ - Rectum adenocarcinoma(331;0.0649)|KIRC - Kidney renal clear cell carcinoma(1967;0.137)		GTTCCTACCTGGCTGCAGTTG	0.587													18	37					0	0	0.000958276	0	0
TIE1	7075	broad.mit.edu	37	1	43777724	43777724	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:43777724C>T	uc001ciu.2	+	11	1631	c.1552C>T	c.(1552-1554)CGT>TGT	p.R518C	TIE1_uc010okd.1_Missense_Mutation_p.R518C|TIE1_uc010oke.1_Missense_Mutation_p.R473C|TIE1_uc009vwq.2_Missense_Mutation_p.R474C|TIE1_uc010okf.1_Missense_Mutation_p.R163C|TIE1_uc010okg.1_Missense_Mutation_p.R163C	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	518	Extracellular (Potential).|Fibronectin type-III 1.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ATACAGTGTTCGTGTGCAGCT	0.602													6	32					0	0	0.00116845	0	0
KIAA0467	23334	broad.mit.edu	37	1	43869374	43869374	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:43869374C>G	uc009vws.1	+	3	340	c.256C>G	c.(256-258)CGG>GGG	p.R86G	C1orf84_uc001cjh.2_Missense_Mutation_p.R84G|C1orf84_uc001cji.1_RNA			Q5T011	SZT2_HUMAN	Homo sapiens mRNA for KIAA0467 protein, partial cds.	86						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				ACCTTCCACCCGGGTCACCTT	0.547													4	72					0	0	0.00116845	0	0
CYP4A11	1579	broad.mit.edu	37	1	47400182	47400182	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:47400182C>T	uc001cqp.3	-	7	891	c.840G>A	c.(838-840)CTG>CTA	p.L280L	CYP4A11_uc001cqq.2_Silent_p.L280L|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	280					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TGATCTTCTCCAGCTCCCCCT	0.517													20	44					0	0	0.00127121	0	0
PODN	127435	broad.mit.edu	37	1	53544457	53544457	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:53544457C>T	uc001cuv.2	+	8	1426	c.1419C>T	c.(1417-1419)GCC>GCT	p.A473A	PODN_uc001cuw.2_Silent_p.A454A|PODN_uc010onr.1_Silent_p.A454A|PODN_uc010ons.1_Silent_p.A331A	NM_153703	NP_714914	Q7Z5L7	PODN_HUMAN	podocan	425	LRR 14.				negative regulation of cell migration|negative regulation of cell proliferation	cytoplasm|extracellular space|proteinaceous extracellular matrix	collagen binding			ovary(1)|pancreas(1)	2						ACCGCGACGCCTTCCGCAAGC	0.637													15	23					0	0	0.000219431	0	0
PRKAA2	5563	broad.mit.edu	37	1	57169985	57169985	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:57169985G>A	uc001cyk.3	+	7	1201	c.1130G>A	c.(1129-1131)AGC>AAC	p.S377N		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	377					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						ATAGCAGACAGCCCCAAAGCA	0.468													16	39					0	0	0.000566183	0	0
DAB1	1600	broad.mit.edu	37	1	57476912	57476912	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:57476912G>A	uc001cys.1	-	15	2152	c.1478C>T	c.(1477-1479)TCC>TTC	p.S493F	DAB1_uc001cyt.1_Missense_Mutation_p.S491F|DAB1_uc001cyq.1_Missense_Mutation_p.S491F|DAB1_uc001cyr.1_Missense_Mutation_p.S407F|DAB1_uc009vzw.1_Missense_Mutation_p.S475F|DAB1_uc009vzx.1_Missense_Mutation_p.S493F	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	526					cell differentiation|nervous system development					skin(2)|ovary(1)	3						AGATGATTTGGATGGAGAGCT	0.478													12	76					0	0	0.000219431	0	0
L1TD1	54596	broad.mit.edu	37	1	62675553	62675553	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:62675553G>A	uc001dae.3	+	4	1409	c.1107G>A	c.(1105-1107)GAG>GAA	p.E369E		NM_019079	NP_061952	Q5T7N2	LITD1_HUMAN	LINE-1 type transposase domain containing 1	369	Glu-rich.									ovary(1)|skin(1)	2						CTAAGCCAGAGGAGATGAAAA	0.438													60	76					0	0	0.000781405	0	0
LEPR	3953	broad.mit.edu	37	1	66062252	66062252	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:66062252G>A	uc001dci.2	+	7	1027	c.825G>A	c.(823-825)GAG>GAA	p.E275E	LEPR_uc001dcg.2_Silent_p.E275E|LEPR_uc001dch.2_Silent_p.E275E|LEPR_uc009waq.2_Intron|LEPR_uc001dcj.2_Silent_p.E275E|LEPR_uc001dck.2_Silent_p.E275E	NM_002303	NP_002294	P48357	LEPR_HUMAN	leptin receptor isoform 1	275	Extracellular (Potential).|Fibronectin type-III 1.				energy reserve metabolic process|multicellular organismal development	extracellular region|integral to membrane|plasma membrane	cytokine receptor activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(397;0.00722)|KIRC - Kidney renal clear cell carcinoma(1967;0.094)		AATATTCAGAGAATTCTACAA	0.338													25	20					0	0	0.000878237	0	0
C1orf141	400757	broad.mit.edu	37	1	67559025	67559025	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:67559025C>T	uc001ddl.1	-	7	977	c.866G>A	c.(865-867)GGC>GAC	p.G289D	C1orf141_uc001ddm.1_Missense_Mutation_p.G289D|C1orf141_uc001ddn.1_RNA	NM_001013674	NP_001013696	Q5JVX7	CA141_HUMAN	hypothetical protein LOC400757	289										ovary(1)	1						AGTTGTGTGGCCCGCTTTAAA	0.328													23	83					0	0	0.000586117	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74507480	74507480	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:74507480G>A	uc001dfy.3	-	7	1327	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	379										ovary(2)	2						GGATATGCAGGAAAAAAATGT	0.353													11	72					0	0	0.000308642	0	0
ABCA4	24	broad.mit.edu	37	1	94480120	94480120	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:94480120C>T	uc001dqh.2	-	38	5543	c.5439G>A	c.(5437-5439)TTG>TTA	p.L1813L	ABCA4_uc009wdp.1_Silent_p.L81L	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	1813	Helical; (Potential).				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		CAAATAATTCCAAGATGAAGG	0.438													77	88					0	0	0.000781405	0	0
DPYD	1806	broad.mit.edu	37	1	97658661	97658661	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:97658661C>T	uc001drv.2	-	20	2723	c.2586G>A	c.(2584-2586)GGG>GGA	p.G862G		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	862					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	GAACTGGTTTCCCTTTCTGGT	0.438													26	45					0	0	0.000878237	0	0
DPYD	1806	broad.mit.edu	37	1	98015215	98015215	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:98015215C>G	uc001drv.2	-	12	1562	c.1425G>C	c.(1423-1425)TGG>TGC	p.W475C		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	475	FAD (Potential).				'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	CTGCAAATACCCATGCTTCAC	0.418													3	50					0	0	6.4e-05	0	0
AGL	178	broad.mit.edu	37	1	100345591	100345591	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:100345591C>T	uc001dsi.1	+	13	2124	c.1724C>T	c.(1723-1725)TCC>TTC	p.S575F	AGL_uc001dsj.1_Missense_Mutation_p.S575F|AGL_uc001dsk.1_Missense_Mutation_p.S575F|AGL_uc001dsl.1_Missense_Mutation_p.S575F|AGL_uc001dsm.1_Missense_Mutation_p.S559F|AGL_uc001dsn.1_Missense_Mutation_p.S558F	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	575	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GGCATTAGTTCCTTAATAAGA	0.358													23	109					0	0	0.000878237	0	0
CCDC76	54482	broad.mit.edu	37	1	100613462	100613462	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:100613462G>A	uc001dsv.2	+	10	849	c.830G>A	c.(829-831)CGA>CAA	p.R277Q	CCDC76_uc010ouf.1_Intron|CCDC76_uc009wea.2_Intron	NM_019083	NP_061956	Q9NUP7	TRM13_HUMAN	coiled-coil domain containing 76	277					tRNA processing		metal ion binding|methyltransferase activity			ovary(1)	1		all_epithelial(167;0.000542)|all_lung(203;0.0154)|Lung NSC(277;0.0155)		Epithelial(280;0.0814)|all cancers(265;0.133)|COAD - Colon adenocarcinoma(174;0.146)|Lung(183;0.194)		CTTGCATTACGATGTTTGGTT	0.328													12	41					0	0	0.000219431	0	0
KCND3	3752	broad.mit.edu	37	1	112524806	112524806	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:112524806C>T	uc001ebu.1	-	2	1023	c.543G>A	c.(541-543)CTG>CTA	p.L181L	KCND3_uc001ebv.1_Silent_p.L181L	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	181	Cytoplasmic (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		AGACCAGGGCCAGCGTGCTGG	0.632													10	13					0	0	0.000442599	0	0
NRAS	4893	broad.mit.edu	37	1	115256529	115256529	+	Missense_Mutation	SNP	T	A	A	rs11554290		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:115256529T>A	uc009wgu.2	-	3	436	c.182A>T	c.(181-183)CAA>CTA	p.Q61L		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GTACTCTTCTTGTCCAGCTGT	0.458	Q61L(HEPG2_LIVER)|Q61R(SKMEL2_SKIN)|Q61R(KMS27_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(IPC298_SKIN)|Q61P(TF1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MHHES1_BONE)|Q61R(HT1197_URINARY_TRACT)|Q61L(MELJUSO_SKIN)|Q61R(ONS76_CENTRAL_NERVOUS_SYSTEM)|Q61R(KU1919_URINARY_TRACT)|Q61L(C3A_LIVER)|Q61R(TT2609C02_THYROID)|Q61R(NCIH2347_LUNG)|Q61L(KMS21BM_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(OCIAML3_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61R(SW1271_LUNG)|Q61L(HL60_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61L(MOLP8_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			44	61					0	0	0.000781405	0	0
NOTCH2	4853	broad.mit.edu	37	1	120466558	120466558	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:120466558C>T	uc001eik.2	-	26	4817	c.4561G>A	c.(4561-4563)GGG>AGG	p.G1521R		NM_024408	NP_077719	Q04721	NOTC2_HUMAN	notch 2 preproprotein	1521	LNR 3.|Negative regulatory region (NRR).|Extracellular (Potential).				anti-apoptosis|bone remodeling|cell cycle arrest|cell fate determination|cell growth|hemopoiesis|induction of apoptosis|negative regulation of cell proliferation|nervous system development|Notch receptor processing|Notch signaling pathway|organ morphogenesis|positive regulation of Ras protein signal transduction|regulation of transcription, DNA-dependent|stem cell maintenance|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|ligand-regulated transcription factor activity|protein binding|receptor activity			lung(8)|haematopoietic_and_lymphoid_tissue(7)|ovary(4)|central_nervous_system(2)|skin(2)|kidney(2)|breast(1)|prostate(1)	27	all_neural(166;0.153)	all_lung(203;1.96e-06)|Lung NSC(69;1.47e-05)|all_epithelial(167;0.000809)		Lung(183;0.0242)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTGTTGCACCCCTGGTCACAG	0.512			N|F|Mis		marginal zone lymphoma|DLBCL				Alagille_Syndrome				86	131					0	0	0.000781405	0	0
NBPF9	400818	broad.mit.edu	37	1	144814704	144814704	+	Silent	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:144814704T>C	uc009wig.1	+	11	1192	c.1116T>C	c.(1114-1116)GCT>GCC	p.A372A	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Silent_p.A372A|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Silent_p.A303A|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Silent_p.A303A|NBPF9_uc010oyg.1_Silent_p.A337A|NBPF9_uc009wii.1_Silent_p.A101A|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.A32A	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	372	Potential.					cytoplasm					0						TGGTTCACGCTCAGGAACGAG	0.493													4	183					0	0	0.00116845	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144864154	144864155	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:144864154_144864155GG>TT	uc001elw.3	-	36	6231_6232	c.5940_5941CC>AA	c.(5938-5943)TCCCTC>TCAATC	p.L1981I	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.L1875I|PDE4DIP_uc001elv.3_Missense_Mutation_p.L988I|PDE4DIP_uc001ema.2_Missense_Mutation_p.L168I	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1981	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTTTCCTGGAGGGAAAGACGTT	0.441			T	PDGFRB	MPD								13	469					0	0	6.4e-05	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144917924	144917925	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:144917924_144917925CC>AA	uc001elw.3	-	11	1652_1653	c.1361_1362GG>TT	c.(1360-1362)CGG>CTT	p.R454L	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R520L|PDE4DIP_uc001emc.1_Missense_Mutation_p.R454L|PDE4DIP_uc001emd.1_Missense_Mutation_p.R454L|PDE4DIP_uc001emb.1_Missense_Mutation_p.R617L|PDE4DIP_uc001eme.1_5'UTR|PDE4DIP_uc001emf.1_Missense_Mutation_p.R241L	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	454	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GTAGGAGCTCCCGAAATTCCTG	0.262			T	PDGFRB	MPD								10	385					0	0	6.4e-05	0	0
NBPF10	100132406	broad.mit.edu	37	1	145297687	145297688	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:145297687_145297688CC>AA	uc001end.3	+	4	597_598	c.562_563CC>AA	c.(562-564)CCC>AAC	p.P188N	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF10_uc001emp.3_Missense_Mutation_p.P188N|NBPF10_uc001emq.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	188											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		ATCATCTGCCCCCAGGTAACAC	0.441													13	356					0	0	6.4e-05	0	0
TCHH	7062	broad.mit.edu	37	1	152082565	152082565	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:152082565A>C	uc001ezp.2	-	2	3128	c.3128T>G	c.(3127-3129)CTC>CGC	p.L1043R	TCHH_uc009wne.1_Missense_Mutation_p.L1043R	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1043	10 X 30 AA tandem repeats.|4-5.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCGCTCCTGGAGTCTTCTTTT	0.254													4	80					0	0	0.000602214	0	0
FLG2	388698	broad.mit.edu	37	1	152323507	152323507	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:152323507C>T	uc001ezw.3	-	3	6828	c.6755G>A	c.(6754-6756)GGA>GAA	p.G2252E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	2252							calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTGGCCAGATCCCCTTCTTCC	0.517													83	187					0	0	0.000781405	0	0
KPRP	448834	broad.mit.edu	37	1	152733161	152733161	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:152733161C>T	uc001fal.1	+	2	1155	c.1097C>T	c.(1096-1098)TCC>TTC	p.S366F		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	366	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGGGGCGCCTCCTGCCCTGAG	0.647													19	38					0	0	0.00152264	0	0
HAPLN2	60484	broad.mit.edu	37	1	156593852	156593853	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:156593852_156593853GG>AA	uc001fpn.1	+	4	746_747	c.339_340GG>AA	c.(337-342)CTGGTC>CTAATC	p.V114I	HAPLN2_uc010phq.1_Missense_Mutation_p.V114I	NM_021817	NP_068589	Q9GZV7	HPLN2_HUMAN	brain link protein-1 precursor	114	Ig-like V-type.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					ACGCCTCCCTGGTCATCGCGGG	0.683													9	15					0	0	6.4e-05	0	0
INSRR	3645	broad.mit.edu	37	1	156815164	156815164	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:156815164C>T	uc010pht.1	-	11	2470	c.2216G>A	c.(2215-2217)AGG>AAG	p.R739K	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	739					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TCCTGCTCACCTTTGGGGGCT	0.667													9	26					0	0	0.000673444	0	0
CD1A	909	broad.mit.edu	37	1	158225031	158225031	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:158225031G>A	uc001frt.2	+	2	749	c.216G>A	c.(214-216)AGG>AGA	p.R72R		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	72	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	CCTGGTCCAGGGGAAACTTCA	0.488													27	68					0	0	0.000409698	0	0
OR10T2	128360	broad.mit.edu	37	1	158368576	158368576	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:158368576C>T	uc010pih.1	-	1	681	c.681G>A	c.(679-681)CTG>CTA	p.L227L		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	227	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					AGGGGATCTTCAGGATGGTGT	0.458													22	34					0	0	0.00047179	0	0
SPTA1	6708	broad.mit.edu	37	1	158592976	158592977	+	Missense_Mutation	DNP	GA	TG	TG			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:158592976_158592977GA>TG	uc001fst.1	-	43	6115_6116	c.5916_5917TC>CA	c.(5914-5919)ACTCTG>ACCATG	p.L1973M		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1973	Spectrin 19.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTGGCATCCAGAGTGTCCTGAG	0.465													127	127					0	0	6.4e-05	0	0
OR10J5	127385	broad.mit.edu	37	1	159505246	159505246	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:159505246C>T	uc010piw.1	-	1	552	c.552G>A	c.(550-552)ATG>ATA	p.M184I		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	184	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					AAGAAAGTTTCATGACTGGGT	0.393													17	54					0	0	0.00074312	0	0
ITLN1	55600	broad.mit.edu	37	1	160851073	160851073	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:160851073C>T	uc001fxc.2	-	5	551	c.435G>A	c.(433-435)AAG>AAA	p.K145K		NM_017625	NP_060095	Q8WWA0	ITLN1_HUMAN	intelectin precursor	145	Fibrinogen C-terminal.				positive regulation of glucose import|positive regulation of protein phosphorylation|response to nematode|signal transduction	anchored to membrane|brush border membrane|extracellular region|membrane raft	receptor binding|sugar binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)|central_nervous_system(1)	7	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			TGCCCAGGTCCTTGGCCTGGA	0.597													19	47					0	0	0.00152264	0	0
PVRL4	81607	broad.mit.edu	37	1	161047265	161047265	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:161047265G>A	uc001fxo.2	-	3	1007	c.708C>T	c.(706-708)ATC>ATT	p.I236I	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_5'Flank	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	236	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			GGATGTGGGTGATCCTTTGGT	0.582													49	120					0	0	0.000781405	0	0
ADAMTS4	9507	broad.mit.edu	37	1	161163784	161163784	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:161163784G>A	uc001fyt.3	-	5	1917	c.1489C>T	c.(1489-1491)CCC>TCC	p.P497S		NM_005099	NP_005090	O75173	ATS4_HUMAN	ADAM metallopeptidase with thrombospondin type 1	497	Disintegrin.				proteolysis|skeletal system development	extracellular space|proteinaceous extracellular matrix	metalloendopeptidase activity|protease binding|zinc ion binding			ovary(4)|central_nervous_system(1)	5	all_cancers(52;3.73e-19)|Breast(13;0.000577)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			GCCTGTGCGGGCCCGCAGGGT	0.672													15	22					0	0	0.000566183	0	0
C1orf226	400793	broad.mit.edu	37	1	162353282	162353282	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:162353282G>A	uc001gby.2	+	2	800	c.628G>A	c.(628-630)GAA>AAA	p.E210K	C1orf226_uc010pkt.1_Missense_Mutation_p.E253K	NM_001085375	NP_001078844	A1L170	CA226_HUMAN	hypothetical protein LOC400793 isoform 2	210										ovary(1)	1						TAGCCAGGACGAATCCAAGCT	0.537													6	6					0	0	0.000274275	0	0
GORAB	92344	broad.mit.edu	37	1	170521409	170521409	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:170521409C>T	uc001gha.2	+	5	1018	c.991C>T	c.(991-993)CGT>TGT	p.R331C	GORAB_uc009wvx.2_Missense_Mutation_p.R151C|GORAB_uc001ghb.2_Missense_Mutation_p.R151C|GORAB_uc001ghc.2_Missense_Mutation_p.R151C|GORAB_uc001ghd.2_Missense_Mutation_p.R124C	NM_152281	NP_689494	Q5T7V8	GORAB_HUMAN	golgin, RAB6-interacting isoform a	331	Necessary for interaction with RCHY1.					Golgi apparatus|nucleus					0						ACCAGTGGTTCGTTTAGAGAG	0.453													49	70					0	0	0.000781405	0	0
RALGPS2	55103	broad.mit.edu	37	1	178854286	178854286	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:178854286C>G	uc001glz.2	+	12	1318	c.980C>G	c.(979-981)CCG>CGG	p.P327R	RALGPS2_uc010pnb.1_Missense_Mutation_p.P327R	NM_152663	NP_689876	Q86X27	RGPS2_HUMAN	Ral GEF with PH domain and SH3 binding motif 2	327	PXXP.				small GTPase mediated signal transduction	cytoplasm|plasma membrane	guanyl-nucleotide exchange factor activity|protein binding				0						CCACAGACACCGCCATCCCCT	0.423													3	80					0	0	0.00024832	0	0
TDRD5	163589	broad.mit.edu	37	1	179561892	179561892	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:179561892C>T	uc001gnf.1	+	2	392	c.142C>T	c.(142-144)CTT>TTT	p.L48F	TDRD5_uc010pnp.1_Missense_Mutation_p.L48F|uc010pno.1_5'Flank	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	48	Lotus/OST-HTH 1.				DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						ACTCCGAATCCTTGGGTATCG	0.478													44	71					0	0	0.000781405	0	0
MR1	3140	broad.mit.edu	37	1	181018257	181018257	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:181018257C>T	uc001goq.1	+	2	142	c.137C>T	c.(136-138)TCG>TTG	p.S46L	MR1_uc001gop.2_Missense_Mutation_p.S46L|MR1_uc001gor.1_Missense_Mutation_p.S46L|MR1_uc001gos.1_Missense_Mutation_p.S46L|MR1_uc010pns.1_Missense_Mutation_p.S46L	NM_001531	NP_001522	Q95460	HMR1_HUMAN	major histocompatibility complex, class	46	Extracellular (Potential).|Ligand-binding.|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|immune response	endoplasmic reticulum|extracellular region|integral to membrane|MHC class I protein complex	MHC class I receptor activity			skin(1)	1						GAATTTATTTCGGTTGGGTAC	0.547													12	27					0	0	0.00136819	0	0
CACNA1E	777	broad.mit.edu	37	1	181701796	181701796	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:181701796G>A	uc001gow.2	+	20	2739	c.2574G>A	c.(2572-2574)GGG>GGA	p.G858G	CACNA1E_uc009wxs.2_Silent_p.G746G|CACNA1E_uc001gox.1_Silent_p.G84G|CACNA1E_uc009wxt.2_Silent_p.G84G	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	858	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCCTCAAGGGGGATGGAGGGG	0.562													4	7					0	0	0.00024832	0	0
KCNT2	343450	broad.mit.edu	37	1	196309670	196309670	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:196309670C>T	uc001gtd.1	-	16	1644	c.1584G>A	c.(1582-1584)AGG>AGA	p.R528R	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Silent_p.R478R|KCNT2_uc001gtf.1_Silent_p.R528R|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Silent_p.R528R|KCNT2_uc001gth.1_Silent_p.R49R	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	528	Cytoplasmic (Potential).|RCK N-terminal.					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TATTATCCTCCCTCCTAACAC	0.308													15	55					0	0	0.000566183	0	0
ASPM	259266	broad.mit.edu	37	1	197094013	197094013	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:197094013G>A	uc001gtu.2	-	12	3412	c.3155C>T	c.(3154-3156)GCG>GTG	p.A1052V	ASPM_uc001gtv.2_Missense_Mutation_p.A1052V|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	1052	CH 1.				mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						AAAAGCAAACGCTATTTTCCA	0.279													46	174					0	0	0.000781405	0	0
RNPEP	6051	broad.mit.edu	37	1	201972397	201972397	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:201972397G>A	uc001gxd.2	+	9	1488	c.1459G>A	c.(1459-1461)GGC>AGC	p.G487S	RNPEP_uc001gxe.2_Missense_Mutation_p.G188S|RNPEP_uc001gxf.2_Missense_Mutation_p.G356S	NM_020216	NP_064601	Q9H4A4	AMPB_HUMAN	arginyl aminopeptidase	487					leukotriene biosynthetic process		epoxide hydrolase activity|zinc ion binding			upper_aerodigestive_tract(1)	1				KIRC - Kidney renal clear cell carcinoma(1967;3.23e-08)|Colorectal(1306;0.005)		GAATACCCCCGGCTGGCCCCC	0.547													12	24					0	0	0.00136819	0	0
ADIPOR1	51094	broad.mit.edu	37	1	202915670	202915670	+	Silent	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:202915670A>G	uc001gyq.3	-	4	594	c.327T>C	c.(325-327)TAT>TAC	p.Y109Y	ADIPOR1_uc010pqd.1_Silent_p.Y33Y|ADIPOR1_uc001gyr.3_5'UTR|ADIPOR1_uc001gys.3_Silent_p.Y109Y	NM_015999	NP_057083	Q96A54	ADR1_HUMAN	adiponectin receptor 1	109	Cytoplasmic (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane|plasma membrane	hormone binding|protein kinase binding|receptor activity				0			BRCA - Breast invasive adenocarcinoma(75;0.141)			CATGTAGCAGATAGTCGTTGT	0.512													14	59					0	0	0.000219431	0	0
CHIT1	1118	broad.mit.edu	37	1	203188447	203188447	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:203188447C>T	uc001gzn.2	-	9	1022	c.926G>A	c.(925-927)TGG>TAG	p.W309*	FMOD_uc010pqi.1_Intron|CHIT1_uc001gzm.1_RNA|CHIT1_uc009xal.1_Nonsense_Mutation_p.W100*|CHIT1_uc009xam.1_RNA|CHIT1_uc009xan.1_RNA|CHIT1_uc001gzo.2_Nonsense_Mutation_p.W300*	NM_003465	NP_003456	Q13231	CHIT1_HUMAN	chitotriosidase precursor	309					chitin catabolic process|immune response|response to bacterium	extracellular space|lysosome	cation binding|chitin binding|endochitinase activity				0						GGCCCCCTTCCAGGAGCAGAC	0.572													38	50					0	0	0.000953801	0	0
NFASC	23114	broad.mit.edu	37	1	204956614	204956614	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:204956614C>T	uc001hbj.2	+	22	2867	c.2539C>T	c.(2539-2541)CAT>TAT	p.H847Y	NFASC_uc010pra.1_Missense_Mutation_p.H950Y|NFASC_uc001hbi.2_Missense_Mutation_p.H950Y|NFASC_uc010prb.1_Missense_Mutation_p.H965Y|NFASC_uc010prc.1_Missense_Mutation_p.H521Y|NFASC_uc001hbk.1_Missense_Mutation_p.H760Y|NFASC_uc001hbl.1_Missense_Mutation_p.H97Y|NFASC_uc001hbm.1_5'UTR|NFASC_uc001hbn.1_5'UTR	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			GGAATGGGATCATCCTGAGCA	0.428													24	36					0	0	0.000720815	0	0
IRF6	3664	broad.mit.edu	37	1	209968740	209968740	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:209968740C>T	uc001hhq.1	-	5	666	c.403G>A	c.(403-405)GAT>AAT	p.D135N	IRF6_uc010psm.1_Missense_Mutation_p.D40N|IRF6_uc009xct.1_Missense_Mutation_p.D135N	NM_006147	NP_006138	O14896	IRF6_HUMAN	interferon regulatory factor 6	135					cell cycle arrest|interferon-gamma-mediated signaling pathway|mammary gland epithelial cell differentiation|negative regulation of cell proliferation|positive regulation of transcription, DNA-dependent|type I interferon-mediated signaling pathway	cytoplasm|nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0351)		TCCTTCTCATCCCAGGGAGCA	0.537										HNSCC(57;0.16)			18	43					0	0	0.000958276	0	0
PTPN14	5784	broad.mit.edu	37	1	214557829	214557829	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:214557829G>A	uc001hkk.1	-	13	1640	c.1369C>T	c.(1369-1371)CTG>TTG	p.L457L	PTPN14_uc010pty.1_Silent_p.L358L	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	457					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		TCTGTATGCAGGATCCCCCTC	0.562													81	115					0	0	0.000781405	0	0
KCNK2	3776	broad.mit.edu	37	1	215259778	215259778	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:215259778C>T	uc001hkq.2	+	2	283	c.114C>T	c.(112-114)TCC>TCT	p.S38S	KCNK2_uc001hko.2_Silent_p.S34S|KCNK2_uc009xdm.2_RNA|KCNK2_uc001hkp.2_RNA|KCNK2_uc010pua.1_RNA|KCNK2_uc001hkr.3_Silent_p.S23S	NM_001017425	NP_001017425	O95069	KCNK2_HUMAN	potassium channel, subfamily K, member 2 isoform	38	Cytoplasmic (Potential).						outward rectifier potassium channel activity				0				OV - Ovarian serous cystadenocarcinoma(81;0.0399)|all cancers(67;0.0556)|GBM - Glioblastoma multiforme(131;0.068)	Dofetilide(DB00204)	TCTCGTTTTCCACGAAACCCA	0.512													15	54					0	0	0.000422831	0	0
MARK1	4139	broad.mit.edu	37	1	220804450	220804450	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:220804450C>G	uc001hmn.3	+	10	1580	c.983C>G	c.(982-984)CCG>CGG	p.P328R	MARK1_uc009xdw.2_Missense_Mutation_p.P328R|MARK1_uc010pun.1_Missense_Mutation_p.P328R|MARK1_uc001hmm.3_Missense_Mutation_p.P306R	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	328	UBA.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		GAGCCTGATCCGGATTTCAAT	0.368													3	41					0	0	6.4e-05	0	0
MIA3	375056	broad.mit.edu	37	1	222806471	222806471	+	Silent	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:222806471T>C	uc001hnl.2	+	6	3366	c.3357T>C	c.(3355-3357)CCT>CCC	p.P1119P	MIA3_uc009xea.1_Silent_p.P955P	NM_198551	NP_940953	Q5JRA6	MIA3_HUMAN	melanoma inhibitory activity family, member 3	1119	Extracellular (Potential).				exocytosis|negative regulation of cell adhesion|negative regulation of cell migration|positive regulation of leukocyte migration|protein transport|wound healing	endoplasmic reticulum membrane|integral to membrane	protein binding			ovary(4)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(131;0.0199)		AAGACACTCCTATGGATGCTA	0.378													40	581					0	0	0.00128727	0	0
TLR5	7100	broad.mit.edu	37	1	223285632	223285632	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:223285632T>C	uc001hnv.1	-	4	1188	c.742A>G	c.(742-744)AAT>GAT	p.N248D	TLR5_uc001hnw.1_Missense_Mutation_p.N248D	NM_003268	NP_003259	O60602	TLR5_HUMAN	toll-like receptor 5 precursor	248	Extracellular (Potential).				cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of toll-like receptor signaling pathway	integral to membrane|plasma membrane	interleukin-1 receptor binding|transmembrane receptor activity			ovary(2)|lung(1)|skin(1)	4				GBM - Glioblastoma multiforme(131;0.0851)		CTGATGGCATTGCTAAAGTTT	0.473													24	95					0	0	0.000720815	0	0
TSNAX	7257	broad.mit.edu	37	1	231673041	231673041	+	Silent	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:231673041A>G	uc001huw.2	+	3	362	c.204A>G	c.(202-204)AAA>AAG	p.K68K	TSNAX-DISC1_uc010pwe.1_5'UTR|TSNAX-DISC1_uc010pwf.1_5'UTR|TSNAX-DISC1_uc010pwg.1_5'UTR|TSNAX-DISC1_uc010pwh.1_5'UTR|TSNAX-DISC1_uc010pwi.1_Intron|TSNAX-DISC1_uc010pwj.1_5'UTR|TSNAX-DISC1_uc010pwk.1_5'UTR|TSNAX-DISC1_uc010pwl.1_RNA	NM_005999	NP_005990	Q99598	TSNAX_HUMAN	translin-associated factor X	68					cell differentiation|multicellular organismal development|spermatogenesis	nucleus|perinuclear region of cytoplasm	protein transporter activity|sequence-specific DNA binding				0		all_cancers(173;0.0395)|Acute lymphoblastic leukemia(190;3.76e-06)|Prostate(94;0.116)				TTGAAAGTAAAAGGACAATTT	0.333													25	38					0	0	0.00127121	0	0
RYR2	6262	broad.mit.edu	37	1	237969462	237969462	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:237969462T>C	uc001hyl.1	+	99	14297	c.14177T>C	c.(14176-14178)ATG>ACG	p.M4726T	RYR2_uc010pyb.1_Missense_Mutation_p.M159T	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4726	Helical; Name=M7; (Potential).				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GCCTGGTATATGACTATGTCT	0.383													13	65					0	0	0.00185496	0	0
EXO1	9156	broad.mit.edu	37	1	242023851	242023851	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:242023851G>A	uc001hzh.2	+	9	1329	c.789G>A	c.(787-789)ATG>ATA	p.M263I	EXO1_uc001hzi.2_Missense_Mutation_p.M263I|EXO1_uc001hzj.2_Missense_Mutation_p.M263I|EXO1_uc009xgq.2_Missense_Mutation_p.M263I	NM_130398	NP_569082	Q9UQ84	EXO1_HUMAN	exonuclease 1 isoform b	263	Interaction with MSH3.				meiosis|mismatch repair	nucleus	double-stranded DNA specific 5'-3' exodeoxyribonuclease activity|flap endonuclease activity|metal ion binding|protein binding|protein binding|ribonuclease H activity|single-stranded DNA specific 5'-3' exodeoxyribonuclease activity			ovary(2)|lung(2)|skin(1)	5	Ovarian(103;0.103)	all_cancers(173;0.0555)	OV - Ovarian serous cystadenocarcinoma(106;0.0107)			ATCTCAAGATGAATATCACGG	0.363								Direct_reversal_of_damage|Editing_and_processing_nucleases					53	70					0	0	0.000781405	0	0
OR2W5	441932	broad.mit.edu	37	1	247654597	247654597	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:247654597C>A	uc001icz.1	+	1	168	c.168C>A	c.(166-168)CAC>CAA	p.H56Q		NM_001004698	NP_001004698	A6NFC9	OR2W5_HUMAN	olfactory receptor, family 2, subfamily W,	56					sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.222)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			TCAGGCTCCACACACCCATGT	0.498													16	30					1.15088e-07	9.99424e-07	0.000422831	1	0
OR11L1	391189	broad.mit.edu	37	1	248004429	248004429	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr1:248004429G>A	uc001idn.1	-	1	770	c.770C>T	c.(769-771)TCC>TTC	p.S257F		NM_001001959	NP_001001959	Q8NGX0	O11L1_HUMAN	olfactory receptor, family 11, subfamily L,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(71;8.78e-05)|all_epithelial(71;9.15e-06)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CACATACATGGAGATCATGGT	0.498													23	50					0	0	0.000375601	0	0
MPP7	143098	broad.mit.edu	37	10	28378684	28378684	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:28378684C>T	uc001iua.1	-	14	1443	c.1039G>A	c.(1039-1041)GAC>AAC	p.D347N	MPP7_uc009xkz.1_RNA|MPP7_uc001iub.1_Missense_Mutation_p.D347N|MPP7_uc009xla.2_Missense_Mutation_p.D347N|MPP7_uc010qdv.1_RNA	NM_173496	NP_775767	Q5T2T1	MPP7_HUMAN	palmitoylated membrane protein 7	347					establishment of cell polarity|positive regulation of protein complex assembly|protein localization to adherens junction|tight junction assembly	MPP7-DLG1-LIN7 complex|tight junction	protein complex scaffold|protein domain specific binding|protein heterodimerization activity|signaling adaptor activity			ovary(1)	1						TCAGCTGTGTCGTACTGATCA	0.368													27	72					0	0	0.00127121	0	0
KIAA1462	57608	broad.mit.edu	37	10	30317117	30317117	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:30317117C>T	uc001iux.2	-	2	2019	c.1960G>A	c.(1960-1962)GAA>AAA	p.E654K	KIAA1462_uc001iuy.2_Intron|KIAA1462_uc001iuz.2_Missense_Mutation_p.E516K|KIAA1462_uc009xle.1_Missense_Mutation_p.E654K	NM_020848	NP_065899	Q9P266	K1462_HUMAN	hypothetical protein LOC57608	654										ovary(4)	4						TCTTCTGGTTCCCCTAGATCT	0.517													7	40					0	0	8.12818e-05	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453													4	34					0	0	0.00024832	0	0
OR13A1	79290	broad.mit.edu	37	10	45799503	45799503	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:45799503G>A	uc001jcc.1	-	4	677	c.368C>T	c.(367-369)ACG>ATG	p.T123M	OR13A1_uc001jcd.1_Missense_Mutation_p.T119M	NM_001004297	NP_001004297	Q8NGR1	O13A1_HUMAN	olfactory receptor, family 13, subfamily A,	123	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGCAGCCCACGTGAGGAAATA	0.597													6	8					0	0	8.12818e-05	0	0
AGAP7	653268	broad.mit.edu	37	10	51465643	51465643	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:51465643C>T	uc001jio.2	-	7	939	c.813G>A	c.(811-813)GGG>GGA	p.G271G	PARG_uc001jih.2_Intron|uc010qha.1_Intron|uc001jin.2_Intron|uc010qhb.1_Intron|uc010qhc.1_Intron	NM_001077685	NP_001071153	Q5VUJ5	AGAP7_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	271	PH.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding				0						TCAGCCATTTCCCACTTCGCT	0.458													7	142					0	0	0.000978159	0	0
CTNNA3	29119	broad.mit.edu	37	10	68526075	68526075	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:68526075C>T	uc009xpn.1	-	9	1351	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K	CTNNA3_uc001jmw.2_Missense_Mutation_p.E410K|CTNNA3_uc001jmx.3_Missense_Mutation_p.E410K	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	410					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TCTTTTATTTCCTTTTCCCGG	0.443													33	52					0	0	0.000409698	0	0
LRRTM3	347731	broad.mit.edu	37	10	68687116	68687116	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:68687116C>T	uc001jmz.1	+	2	992	c.442C>T	c.(442-444)CTG>TTG	p.L148L	CTNNA3_uc009xpn.1_Intron|CTNNA3_uc001jmw.2_Intron|CTNNA3_uc001jmx.3_Intron|CTNNA3_uc009xpo.1_Intron|LRRTM3_uc001jmy.2_Silent_p.L148L	NM_178011	NP_821079	Q86VH5	LRRT3_HUMAN	leucine rich repeat transmembrane neuronal 3	148	Extracellular (Potential).|LRR 4.					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						GCTGCATTCTCTGGGATCTGA	0.438													20	91					0	0	0.00188189	0	0
AIFM2	84883	broad.mit.edu	37	10	71873973	71873973	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:71873973G>A	uc010qjg.1	-	8	1096	c.1083C>T	c.(1081-1083)GTC>GTT	p.V361V	AIFM2_uc001jqp.1_Silent_p.V361V	NM_032797	NP_116186	Q9BRQ8	AIFM2_HUMAN	apoptosis-inducing factor (AIF)-like	361					apoptotic mitochondrial changes|chromosome condensation|induction of apoptosis	cytosol|integral to membrane|mitochondrial outer membrane	DNA binding|electron-transferring-flavoprotein dehydrogenase activity|flavin adenine dinucleotide binding			central_nervous_system(1)	1						AGCTCGTAGAGACGAACAGGT	0.602													9	18					0	0	0.000274275	0	0
SGPL1	8879	broad.mit.edu	37	10	72631691	72631691	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:72631691C>T	uc001jrm.2	+	11	1229	c.1007C>T	c.(1006-1008)CCA>CTA	p.P336L	SGPL1_uc009xqk.2_RNA	NM_003901	NP_003892	O95470	SGPL1_HUMAN	sphingosine-1-phosphate lyase 1	336	Cytoplasmic (Potential).				apoptosis|carboxylic acid metabolic process|ceramide metabolic process|sphingolipid catabolic process	integral to endoplasmic reticulum membrane	carboxy-lyase activity|pyridoxal phosphate binding|sphinganine-1-phosphate aldolase activity				0					Pyridoxal Phosphate(DB00114)	CTGGAGCACCCATTTGATTTC	0.458													8	38					0	0	0.000274275	0	0
UNC5B	219699	broad.mit.edu	37	10	73046583	73046583	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:73046583C>T	uc001jro.2	+	5	1135	c.690C>T	c.(688-690)ATC>ATT	p.I230I	UNC5B_uc001jrp.2_Silent_p.I230I	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	230	Ig-like C2-type.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						CCAAGAACATCGTGGCCAAAC	0.637													25	55					0	0	0.00178596	0	0
DUSP13	51207	broad.mit.edu	37	10	76868835	76868835	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:76868835G>A	uc001jws.2	-	1	136	c.81C>T	c.(79-81)CTC>CTT	p.L27L	DUSP13_uc001jwu.2_5'UTR|DUSP13_uc001jww.2_Silent_p.L27L|DUSP13_uc009xrs.2_5'UTR|DUSP13_uc001jwt.2_5'UTR|DUSP13_uc001jwv.2_5'UTR|SAMD8_uc001jwx.1_5'Flank|SAMD8_uc001jwy.1_5'Flank	NM_001007271	NP_001007272	Q6B8I1	MDSP_HUMAN	muscle-restricted dual specificity phosphatase	27						cytoplasm	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0	all_cancers(46;0.0207)|all_epithelial(25;0.00126)|Prostate(51;0.0112)|Ovarian(15;0.0348)					CTGCCCGCAGGAGCTCCTCCA	0.637													6	12					0	0	8.12818e-05	0	0
GPR120	338557	broad.mit.edu	37	10	95347054	95347054	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:95347054G>A	uc010qnt.1	+	4	878	c.822G>A	c.(820-822)CAG>CAA	p.Q274Q	GPR120_uc010qnu.1_Silent_p.Q258Q	NM_181745	NP_859529	Q5NUL3	O3FA1_HUMAN	G protein-coupled receptor 120	274	Cytoplasmic (Potential).			Q -> H (in Ref. 2; BAD83368).	negative regulation of cytokine secretion|negative regulation of inflammatory response|regulation of glucose transport	integral to membrane|plasma membrane	fatty acid binding				0		Colorectal(252;0.122)				TGTCCCAGCAGGACTTCCGGC	0.547													10	40					0	0	0.000673444	0	0
CYP2C9	1559	broad.mit.edu	37	10	96708970	96708970	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:96708970G>A	uc001kka.3	+	5	773	c.748G>A	c.(748-750)GAA>AAA	p.E250K	CYP2C9_uc009xut.2_Missense_Mutation_p.E250K	NM_000771	NP_000762	P11712	CP2C9_HUMAN	cytochrome P450, family 2, subfamily C,	250					exogenous drug catabolic process|monocarboxylic acid metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid metabolic process|urea metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|caffeine oxidase activity|drug binding|electron carrier activity|heme binding|oxygen binding|steroid hydroxylase activity			skin(4)|ovary(2)	6		Colorectal(252;0.0902)		all cancers(201;6.93e-05)	Acenocoumarol(DB01418)|Alosetron(DB00969)|Amiodarone(DB01118)|Antihemophilic Factor(DB00025)|Aprepitant(DB00673)|Bosentan(DB00559)|Carprofen(DB00821)|Carvedilol(DB01136)|Celecoxib(DB00482)|Clomipramine(DB01242)|Dapsone(DB00250)|Delavirdine(DB00705)|Desloratadine(DB00967)|Desogestrel(DB00304)|Diclofenac(DB00586)|Esomeprazole(DB00736)|Etodolac(DB00749)|Fluconazole(DB00196)|Fluoxetine(DB00472)|Flurbiprofen(DB00712)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Gemfibrozil(DB01241)|Ginkgo biloba(DB01381)|Glibenclamide(DB01016)|Glimepiride(DB00222)|Glipizide(DB01067)|Guanfacine(DB01018)|Hydromorphone(DB00327)|Ibuprofen(DB01050)|Imipramine(DB00458)|Irbesartan(DB01029)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Losartan(DB00678)|Lumiracoxib(DB01283)|Marinol(DB00470)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mephenytoin(DB00532)|Metronidazole(DB00916)|Miconazole(DB01110)|Midazolam(DB00683)|Montelukast(DB00471)|Nateglinide(DB00731)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Oxymorphone(DB01192)|Pantoprazole(DB00213)|Paramethadione(DB00617)|Phenprocoumon(DB00946)|Phenytoin(DB00252)|Pravastatin(DB00175)|Quinidine(DB00908)|Ritonavir(DB00503)|Rosiglitazone(DB00412)|Sertraline(DB01104)|Sildenafil(DB00203)|Sulfamethoxazole(DB01015)|Suprofen(DB00870)|Tamoxifen(DB00675)|Tenoxicam(DB00469)|Terfenadine(DB00342)|Tolbutamide(DB01124)|Torasemide(DB00214)|Troleandomycin(DB01361)|Valdecoxib(DB00580)|Valsartan(DB00177)|Voriconazole(DB00582)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zileuton(DB00744)	AAAAGTAAAAGAACACCAAGA	0.313													11	41					0	0	0.000673444	0	0
BLNK	29760	broad.mit.edu	37	10	97987287	97987287	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:97987287G>A	uc001kls.3	-	5	418	c.240C>T	c.(238-240)GAC>GAT	p.D80D	BLNK_uc001kme.3_5'UTR|BLNK_uc001klt.3_5'UTR|BLNK_uc009xvc.2_Intron|BLNK_uc001klu.3_5'UTR|BLNK_uc001klv.3_Silent_p.D80D|BLNK_uc001klw.3_RNA|BLNK_uc001klx.3_Silent_p.D80D|BLNK_uc001kly.3_Silent_p.D80D|BLNK_uc001klz.3_RNA|BLNK_uc001kma.3_Silent_p.D80D|BLNK_uc001kmb.3_5'UTR|BLNK_uc001kmc.3_RNA|BLNK_uc001kmd.3_5'UTR|BLNK_uc009xvd.2_RNA	NM_013314	NP_037446	Q8WV28	BLNK_HUMAN	B-cell linker isoform 1	80					B cell differentiation|humoral immune response|inflammatory response|intracellular signal transduction	cytoplasm|plasma membrane	SH3/SH2 adaptor activity|transmembrane receptor protein tyrosine kinase adaptor activity			skin(2)	2		Colorectal(252;0.083)		Epithelial(162;7.89e-08)|all cancers(201;2.27e-06)		ACATCTCTGAGTCCGAGTGCT	0.597													18	51					0	0	0.000958276	0	0
C10orf12	26148	broad.mit.edu	37	10	98744728	98744728	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:98744728C>T	uc001kmv.2	+	1	3688	c.3581C>T	c.(3580-3582)TCT>TTT	p.S1194F		NM_015652	NP_056467	Q8N655	CJ012_HUMAN	hypothetical protein LOC26148	1194										skin(2)	2		Colorectal(252;0.172)		Epithelial(162;6.35e-09)|all cancers(201;3.21e-07)		GGTGAATCCTCTTCAAGGCCT	0.502													5	25					0	0	0.00116845	0	0
SEC31B	25956	broad.mit.edu	37	10	102256030	102256030	+	Silent	SNP	G	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:102256030G>C	uc001krc.1	-	18	2397	c.2295C>G	c.(2293-2295)CCC>CCG	p.P765P	SEC31B_uc010qpo.1_Silent_p.P764P|SEC31B_uc001krd.1_Silent_p.P302P|SEC31B_uc001krf.1_Silent_p.P302P|SEC31B_uc001kre.1_Silent_p.P302P|SEC31B_uc001krg.1_Silent_p.P334P	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	765					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		CACAGTCCCTGGGTAGAAAGC	0.448													7	22					0	0	0.000157383	0	0
NT5C2	22978	broad.mit.edu	37	10	104860814	104860814	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:104860814G>A	uc001kwo.2	-	8	713	c.527C>T	c.(526-528)CCC>CTC	p.P176L	NT5C2_uc010qqp.1_Missense_Mutation_p.P147L|NT5C2_uc001kwq.2_Missense_Mutation_p.P176L|NT5C2_uc001kwp.2_5'UTR	NM_012229	NP_036361	P49902	5NTC_HUMAN	5'-nucleotidase, cytosolic II	176					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|metal ion binding|nucleotide binding|protein binding				0		all_hematologic(284;0.176)|Colorectal(252;0.178)		Epithelial(162;1.33e-08)|all cancers(201;1.04e-07)|BRCA - Breast invasive adenocarcinoma(275;0.159)	Adenosine triphosphate(DB00171)|Ribavirin(DB00811)	GGTATATCTGGGACAATTAGT	0.299													15	39					0	0	0.000219431	0	0
SORCS3	22986	broad.mit.edu	37	10	107022168	107022168	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:107022168G>A	uc001kyi.1	+	26	3750	c.3523G>A	c.(3523-3525)GAA>AAA	p.E1175K		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1175	Cytoplasmic (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		GAGCCAAAGTGAAAACGCCCC	0.507													10	15					0	0	0.000442599	0	0
ADD3	120	broad.mit.edu	37	10	111860448	111860448	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:111860448C>T	uc001kyt.3	+	3	351	c.37C>T	c.(37-39)CCT>TCT	p.P13S	ADD3_uc001kys.3_Missense_Mutation_p.P13S|ADD3_uc001kyu.2_Missense_Mutation_p.P13S|ADD3_uc001kyv.2_Missense_Mutation_p.P13S|ADD3_uc001kyw.2_Missense_Mutation_p.P13S	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	13						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		GATTACCACTCCTCCTCCTCC	0.433													12	24					0	0	0.000308642	0	0
TDRD1	56165	broad.mit.edu	37	10	115947899	115947899	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:115947899G>A	uc001lbg.1	+	2	462	c.309G>A	c.(307-309)AGG>AGA	p.R103R	TDRD1_uc001lbf.2_Silent_p.R94R|TDRD1_uc001lbh.1_Silent_p.R94R|TDRD1_uc001lbi.1_Silent_p.R94R	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	103					DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		AAGGAGACAGGAAAAAATTGC	0.428													20	48					0	0	0.00152264	0	0
AFAP1L2	84632	broad.mit.edu	37	10	116067573	116067573	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:116067573C>T	uc001lbn.2	-	10	1364	c.1063G>A	c.(1063-1065)GAG>AAG	p.E355K	AFAP1L2_uc001lbo.2_Missense_Mutation_p.E355K|AFAP1L2_uc010qse.1_Missense_Mutation_p.E408K|AFAP1L2_uc001lbp.2_Missense_Mutation_p.E383K|AFAP1L2_uc001lbr.1_Missense_Mutation_p.E355K|AFAP1L2_uc010qsd.1_5'Flank	NM_001001936	NP_001001936	Q8N4X5	AF1L2_HUMAN	KIAA1914 protein isoform 1	355	PH 2.				inflammatory response|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of interleukin-8 production|positive regulation of transcription, DNA-dependent|regulation of interleukin-6 production|regulation of mitotic cell cycle	cytoplasm	protein tyrosine kinase activator activity|SH2 domain binding|SH3 domain binding			ovary(1)|breast(1)	2		Colorectal(252;0.175)|Breast(234;0.231)		Epithelial(162;0.0219)|all cancers(201;0.0561)		CTGGATGTCTCGAGGGACCTC	0.413													5	26					0	0	0.000602214	0	0
METTL10	399818	broad.mit.edu	37	10	126454046	126454046	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr10:126454046G>A	uc001lhy.1	-	5	568	c.531C>T	c.(529-531)CTC>CTT	p.L177L	FAM53B_uc001lhu.1_5'UTR|METTL10_uc001lhz.1_Silent_p.L89L|METTL10_uc001lia.1_Silent_p.L89L	NM_212554	NP_997719	Q5JPI9	MTL10_HUMAN	methyltransferase like 10	177							methyltransferase activity				0		all_lung(145;0.0186)|Lung NSC(174;0.0295)|all_neural(114;0.116)|Colorectal(57;0.172)		Colorectal(40;0.101)|COAD - Colon adenocarcinoma(40;0.111)		ACACCCTGGAGAGAGATTTCA	0.363													21	63					0	0	0.00152264	0	0
DUSP8	1850	broad.mit.edu	37	11	1578618	1578618	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:1578618G>A	uc001lts.2	-	7	1136	c.1008C>T	c.(1006-1008)ACC>ACT	p.T336T		NM_004420	NP_004411	Q13202	DUS8_HUMAN	dual specificity phosphatase 8	336	Tyrosine-protein phosphatase.|Pro-rich.				inactivation of MAPK activity	cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity				0		all_epithelial(84;0.000134)|Ovarian(85;0.0014)|Breast(177;0.00147)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.000621)|Lung(200;0.0687)|LUSC - Lung squamous cell carcinoma(625;0.0825)		CGCTCTCTGAGGTAGGTGGTG	0.607													12	11					0	0	0.000422831	0	0
ZNF143	7702	broad.mit.edu	37	11	9519279	9519279	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:9519279C>T	uc001mhr.2	+	10	1017	c.899C>T	c.(898-900)TCG>TTG	p.S300L	ZNF143_uc009yfu.2_Missense_Mutation_p.S299L|ZNF143_uc010rby.1_Missense_Mutation_p.S269L	NM_003442	NP_003433	P52747	ZN143_HUMAN	zinc finger protein 143	300	C2H2-type 3.				regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase III promoter|transcription from RNA polymerase II promoter|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding|zinc ion binding				0				all cancers(16;4.12e-09)|Epithelial(150;2.29e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0212)		TATCGGTGTTCGGAAGATAAT	0.323													18	15					0	0	0.00152264	0	0
MRVI1	10335	broad.mit.edu	37	11	10647940	10647940	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:10647940C>T	uc010rcc.1	-	9	1327	c.941G>A	c.(940-942)GGG>GAG	p.G314E	MRVI1_uc001miw.2_Missense_Mutation_p.G305E|MRVI1_uc010rcb.1_Missense_Mutation_p.G306E|MRVI1_uc009ygb.1_5'UTR|MRVI1_uc001mix.2_5'UTR|MRVI1_uc001miz.2_Missense_Mutation_p.G223E|MRVI1_uc009ygc.1_Missense_Mutation_p.G223E|MRVI1_uc010rcd.1_Intron|MRVI1_uc009ygd.1_5'UTR|MRVI1_uc010rce.1_Intron	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	287					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		GGCCATTTTCCCACTGCTGTT	0.562													10	5					0	0	0.000978159	0	0
CTR9	9646	broad.mit.edu	37	11	10789408	10789409	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:10789408_10789409GG>TT	uc001mja.2	+	14	1891_1892	c.1742_1743GG>TT	c.(1741-1743)TGG>TTT	p.W581F		NM_014633	NP_055448	Q6PD62	CTR9_HUMAN	SH2 domain binding protein 1	581	TPR 12.				histone H2B ubiquitination|histone monoubiquitination	Cdc73/Paf1 complex|nuclear speck				ovary(2)	2				all cancers(16;1.64e-07)|Epithelial(150;2.47e-07)|BRCA - Breast invasive adenocarcinoma(625;0.111)		AAACAAGAATGGGGTCCTGGGC	0.421													9	187					0	0	6.4e-05	0	0
KCNC1	3746	broad.mit.edu	37	11	17794121	17794121	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:17794121G>A	uc001mnk.3	+	2	1535	c.1480G>A	c.(1480-1482)GAA>AAA	p.E494K	KCNC1_uc009yhc.1_Missense_Mutation_p.E494K	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	494	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						GGCCCAGGAAGAAATTTTAGA	0.498													34	26					0	0	0.00058488	0	0
LOC494141	494141	broad.mit.edu	37	11	18232101	18232101	+	RNA	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:18232101G>A	uc009yhh.2	+	2		c.1125G>A			LOC494141_uc001mnx.3_RNA|LOC494141_uc009yhi.1_RNA	NR_026541				Homo sapiens cDNA FLJ29025 fis, clone PRS03236.												0						AAGGTTATATGAAAAAAAACA	0.383													9	9					0	0	0.000978159	0	0
CCDC73	493860	broad.mit.edu	37	11	32636437	32636437	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:32636437G>A	uc001mtv.2	-	16	1471	c.1427C>T	c.(1426-1428)TCT>TTT	p.S476F		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	476										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTCATCCTGAGAAACAACAGT	0.333													27	26					0	0	0.00127121	0	0
OR4A15	81328	broad.mit.edu	37	11	55135946	55135946	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:55135946T>C	uc010rif.1	+	1	587	c.587T>C	c.(586-588)TTC>TCC	p.F196S		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CAGCTCCCTTTCTGTGGACCC	0.428													43	34					0	0	0.000437636	0	0
OR10AG1	282770	broad.mit.edu	37	11	55735718	55735718	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:55735718C>T	uc010rit.1	-	1	222	c.222G>A	c.(220-222)ATG>ATA	p.M74I		NM_001005491	NP_001005491	Q8NH19	O10AG_HUMAN	olfactory receptor, family 10, subfamily AG,	74	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.0137)					TCCAAATGTCCATGAGCATTC	0.383													33	29					0	0	0.00058488	0	0
OR8K3	219473	broad.mit.edu	37	11	56085993	56085993	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:56085993C>T	uc010rjf.1	+	1	211	c.211C>T	c.(211-213)CTT>TTT	p.L71F		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TTTCATGGATCTTGGTTATTC	0.383													63	64					0	0	0.000781405	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57069943	57069943	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:57069943G>A	uc001njr.2	-	6	4985	c.4673C>T	c.(4672-4674)TCC>TTC	p.S1558F	TNKS1BP1_uc001njp.2_Missense_Mutation_p.S130F|TNKS1BP1_uc001njq.2_Missense_Mutation_p.S130F|TNKS1BP1_uc001njs.2_Missense_Mutation_p.S1558F	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1558	Acidic.				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				CTCAATGAAGGAGAAGTCCTG	0.637													4	5					0	0	0.00024832	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995465	57995465	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:57995465A>G	uc010rkd.1	-	1	883	c.883T>C	c.(883-885)TAC>CAC	p.Y295H		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	295	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				CTAAGGCTGTAAAGCAAAGGG	0.552													38	29					0	0	0.000953801	0	0
TMEM132A	54972	broad.mit.edu	37	11	60701119	60701119	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:60701119C>G	uc001nqj.2	+	8	1655	c.1462C>G	c.(1462-1464)CTG>GTG	p.L488V	TMEM132A_uc001nqi.2_Missense_Mutation_p.L489V|TMEM132A_uc001nqk.2_Missense_Mutation_p.L501V|TMEM132A_uc001nql.1_3'UTR|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	488	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CTCGCTGCGGCTGACCGTGTG	0.716													8	5					0	0	0.000157383	0	0
MAP3K11	4296	broad.mit.edu	37	11	65373427	65373427	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:65373427G>A	uc001oew.2	-	7	2222	c.1729C>T	c.(1729-1731)CAG>TAG	p.Q577*	MAP3K11_uc001oev.2_5'UTR|MAP3K11_uc010rol.1_Nonsense_Mutation_p.Q320*|MAP3K11_uc001oex.1_Nonsense_Mutation_p.Q84*	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	577					activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity	p.Q577H(1)		breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CTCCCATTCTGGGCTTCCCCA	0.617													6	5					0	0	8.12818e-05	0	0
RBM4B	83759	broad.mit.edu	37	11	66436569	66436569	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:66436569G>A	uc001oja.2	-	2	1275	c.606C>T	c.(604-606)ACC>ACT	p.T202T	RBM4B_uc001ojb.2_Silent_p.T202T	NM_031492	NP_113680	Q9BQ04	RBM4B_HUMAN	RNA binding motif protein 4B	202	Interaction with TNPO3 (By similarity).				circadian regulation of gene expression|entrainment of circadian clock by photoperiod|mRNA processing|RNA splicing	nucleolus	nucleotide binding|RNA binding|zinc ion binding				0						CGTAGCCCATGGTGTAAGGTG	0.512													20	9					0	0	0.00152264	0	0
GPR152	390212	broad.mit.edu	37	11	67219543	67219543	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:67219543G>A	uc001olm.2	-	1	658	c.653C>T	c.(652-654)ACA>ATA	p.T218I	uc009yrw.1_5'Flank|CABP4_uc001oln.2_5'Flank	NM_206997	NP_996880	Q8TDT2	GP152_HUMAN	G protein-coupled receptor 152	218	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			GCGACAGGCTGTGGCCTGGGT	0.667													15	17					0	0	0.00074312	0	0
PDE2A	5138	broad.mit.edu	37	11	72289953	72289953	+	Silent	SNP	C	T	T	rs143835725		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:72289953C>T	uc010rrc.1	-	28	2700	c.2457G>A	c.(2455-2457)ACG>ACA	p.T819T	PDE2A_uc001oso.2_Silent_p.T798T|PDE2A_uc010rra.1_Silent_p.T812T|PDE2A_uc001osn.2_Silent_p.T563T|PDE2A_uc010rrb.1_Silent_p.T810T|PDE2A_uc010rrd.1_Silent_p.T704T	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	819	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	CGATCTTTCTCGTAGTCTTCC	0.592													105	67					0	0	0.000781405	0	0
CREBZF	58487	broad.mit.edu	37	11	85375616	85375616	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:85375616G>A	uc001pas.2	-	1	567	c.304C>T	c.(304-306)CTG>TTG	p.L102L	CREBZF_uc010rtc.1_RNA|CREBZF_uc010rtd.1_RNA	NM_001039618	NP_001034707	Q9NS37	ZHANG_HUMAN	HCF-binding transcription factor Zhangfei	102					negative regulation of gene expression, epigenetic|negative regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|response to virus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Acute lymphoblastic leukemia(157;4.19e-06)|all_hematologic(158;0.0033)				AGCCCAGACAGAAAGTCCATA	0.711													32	33					0	0	0.000692331	0	0
FAT3	120114	broad.mit.edu	37	11	92085966	92085966	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:92085966G>A	uc001pdj.3	+	1	705	c.688G>A	c.(688-690)GAA>AAA	p.E230K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	230	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTATGATCTGGAAATTTTGGC	0.393										TCGA Ovarian(4;0.039)			186	149					0	0	0.000781405	0	0
CNTN5	53942	broad.mit.edu	37	11	100061917	100061917	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:100061917G>A	uc001pga.2	+	14	1979	c.1640G>A	c.(1639-1641)GGA>GAA	p.G547E	CNTN5_uc009ywv.1_Missense_Mutation_p.G547E|CNTN5_uc001pfz.2_Missense_Mutation_p.G547E|CNTN5_uc001pgb.2_Missense_Mutation_p.G473E|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	547	Ig-like C2-type 5.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TCAGACGAGGGAAAGTACGTT	0.383													18	18					0	0	0.00121646	0	0
NNMT	4837	broad.mit.edu	37	11	114168772	114168772	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:114168772A>G	uc001por.1	+	4	518	c.254A>G	c.(253-255)GAC>GGC	p.D85G	NNMT_uc001pos.1_Missense_Mutation_p.D85G	NM_006169	NP_006160	P40261	NNMT_HUMAN	nicotinamide N-methyltransferase	85		S-adenosyl-L-methionine.			xenobiotic metabolic process	cytosol	nicotinamide N-methyltransferase activity|pyridine N-methyltransferase activity			ovary(1)	1		all_cancers(61;4.83e-16)|all_epithelial(67;7.28e-09)|all_hematologic(158;0.000135)|Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0101)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Prostate(24;0.0906)		BRCA - Breast invasive adenocarcinoma(274;2.79e-06)|Epithelial(105;1.32e-05)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.128)	Niacin(DB00627)	GTCGTCACTGACTACTCAGAC	0.527													12	40					0	0	0.000422831	0	0
DSCAML1	57453	broad.mit.edu	37	11	117332272	117332272	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:117332272G>A	uc001prh.1	-	18	3488	c.3486C>T	c.(3484-3486)ATC>ATT	p.I1162I		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1102	Fibronectin type-III 3.|Extracellular (Potential).				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CGTCAGAAGTGATGGACAGGG	0.607													25	27					0	0	0.001512	0	0
TREH	11181	broad.mit.edu	37	11	118529397	118529397	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:118529397C>T	uc001pty.1	-	14	1636	c.1591G>A	c.(1591-1593)GAA>AAA	p.E531K	TREH_uc009zaj.1_Missense_Mutation_p.E500K|TREH_uc001ptz.1_Missense_Mutation_p.E408K	NM_007180	NP_009111	O43280	TREA_HUMAN	trehalase precursor	531					polysaccharide digestion|trehalose catabolic process	anchored to plasma membrane	alpha,alpha-trehalase activity			pancreas(1)	1	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.0564)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.16e-05)		ACCTGAACTTCATATTCTCCT	0.627													4	0					0	0	0.000602214	0	0
TRIM29	23650	broad.mit.edu	37	11	120008004	120008004	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:120008004G>A	uc001pwz.2	-	1	860	c.736C>T	c.(736-738)CTT>TTT	p.L246F	TRIM29_uc001pxa.2_RNA	NM_012101	NP_036233	Q14134	TRI29_HUMAN	tripartite motif protein TRIM29	246	B box-type.				transcription from RNA polymerase II promoter	cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(109;0.00117)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.37e-06)		AACATGCAAAGGTAGCAGATG	0.612													32	33					0	0	0.00148497	0	0
OR8B2	26595	broad.mit.edu	37	11	124252578	124252578	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr11:124252578A>T	uc010sai.1	-	1	662	c.662T>A	c.(661-663)ATT>AAT	p.I221N		NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	221	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GCTAGTGACAATGAAAACATA	0.418													46	52					0	0	0.000781405	0	0
CCDC77	84318	broad.mit.edu	37	12	542408	542408	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:542408C>T	uc001qig.2	+	9	921	c.741C>T	c.(739-741)ATC>ATT	p.I247I	CCDC77_uc009zdk.2_Silent_p.I215I|CCDC77_uc010sdp.1_Silent_p.I215I|CCDC77_uc010sdq.1_Silent_p.I215I	NM_032358	NP_115734	Q9BR77	CCD77_HUMAN	coiled-coil domain containing 77 isoform a	247	Potential.					centrosome				ovary(1)	1	all_cancers(10;0.0149)|all_epithelial(11;0.035)|all_lung(10;0.111)|Ovarian(42;0.142)|Lung NSC(10;0.156)		OV - Ovarian serous cystadenocarcinoma(31;0.00123)|BRCA - Breast invasive adenocarcinoma(9;0.033)			AAGGGCTCATCGAGGACAGAC	0.468													34	33					0	0	0.00058488	0	0
CHD4	1108	broad.mit.edu	37	12	6702590	6702590	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:6702590G>C	uc001qpo.2	-	16	2670	c.2506C>G	c.(2506-2508)CGC>GGC	p.R836G	CHD4_uc001qpn.2_Missense_Mutation_p.R829G|CHD4_uc001qpp.2_Missense_Mutation_p.R833G	NM_001273	NP_001264	Q14839	CHD4_HUMAN	chromodomain helicase DNA binding protein 4	836	Helicase ATP-binding.				chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|zinc ion binding			central_nervous_system(2)	2						ACCTTCATGCGGGAGGCCTTC	0.522													3	63					0	0	6.4e-05	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716008	13716008	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:13716008G>A	uc001rbt.2	-	13	4343	c.4164C>T	c.(4162-4164)ATC>ATT	p.I1388I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1388	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CAAAAGTGGGGATGAAAGGGT	0.622													19	10					0	0	0.00074312	0	0
ATF7IP	55729	broad.mit.edu	37	12	14613792	14613792	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:14613792C>T	uc001rbw.2	+	9	2680	c.2522C>T	c.(2521-2523)CCC>CTC	p.P841L	ATF7IP_uc010shs.1_3'UTR|ATF7IP_uc001rbu.2_Missense_Mutation_p.P841L|ATF7IP_uc001rbv.1_Missense_Mutation_p.P840L|ATF7IP_uc001rbx.2_Missense_Mutation_p.P840L|ATF7IP_uc010sht.1_3'UTR|ATF7IP_uc001rby.3_Missense_Mutation_p.P841L|ATF7IP_uc001rca.2_Missense_Mutation_p.P841L	NM_018179	NP_060649	Q6VMQ6	MCAF1_HUMAN	activating transcription factor 7 interacting	841					DNA methylation|interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|regulation of RNA polymerase II transcriptional preinitiation complex assembly|transcription, DNA-dependent		protein binding			lung(3)|ovary(1)|skin(1)	5						TTGCCAAATCCCACTAAACCA	0.468													33	39					0	0	0.000953801	0	0
EPS8	2059	broad.mit.edu	37	12	15811501	15811501	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:15811501C>A	uc009zif.2	-	11	1050	c.956G>T	c.(955-957)CGG>CTG	p.R319L	EPS8_uc001rdb.2_Missense_Mutation_p.R319L|EPS8_uc009zig.2_Missense_Mutation_p.R59L|EPS8_uc010shv.1_Missense_Mutation_p.R59L	NM_004447	NP_004438	Q12929	EPS8_HUMAN	epidermal growth factor receptor pathway	319					cell proliferation|epidermal growth factor receptor signaling pathway		SH3/SH2 adaptor activity			ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		all_epithelial(100;1.87e-05)|Breast(259;0.000286)|Hepatocellular(102;0.244)		BRCA - Breast invasive adenocarcinoma(232;4.29e-05)|GBM - Glioblastoma multiforme(207;0.0264)		AGGTTTTGCCCGCAGCGTTAA	0.348													8	141					0.000442599	0.00380935	0.000442599	1	0
MRPS35	60488	broad.mit.edu	37	12	27869317	27869317	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:27869317C>T	uc001rih.2	+	3	295	c.247C>T	c.(247-249)CTT>TTT	p.L83F	MRPS35_uc001rii.2_Missense_Mutation_p.L83F	NM_021821	NP_068593	P82673	RT35_HUMAN	mitochondrial ribosomal protein S35 precursor	83					DNA damage response, detection of DNA damage	mitochondrial small ribosomal subunit					0	Lung SC(9;0.0873)					TGCAGTACCTCTTCCTGTTCG	0.453													17	21					0	0	0.000958276	0	0
OVCH1	341350	broad.mit.edu	37	12	29640716	29640716	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:29640716G>A	uc001rix.1	-	7	802	c.802C>T	c.(802-804)CCC>TCC	p.P268S		NM_183378	NP_899234	Q7RTY7	OVCH1_HUMAN	ovochymase 1 precursor	268	Peptidase S1 1.				proteolysis	extracellular region	metal ion binding|serine-type endopeptidase activity			ovary(3)|central_nervous_system(3)|pancreas(3)|large_intestine(1)	10	Lung NSC(12;1.84e-09)|Acute lymphoblastic leukemia(23;0.00885)|all_hematologic(23;0.0155)					tttcttaCGGGAACTGAACCT	0.333													9	2					0	0	0.000442599	0	0
FGD4	121512	broad.mit.edu	37	12	32755144	32755144	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:32755144C>T	uc001rkz.2	+	7	1363	c.886C>T	c.(886-888)CTT>TTT	p.L296F	FGD4_uc001rlc.2_Missense_Mutation_p.L381F|FGD4_uc001rky.2_Missense_Mutation_p.L48F|FGD4_uc001rla.2_5'UTR|FGD4_uc010ske.1_Missense_Mutation_p.L408F|FGD4_uc001rlb.1_RNA	NM_139241	NP_640334	Q96M96	FGD4_HUMAN	FYVE, RhoGEF and PH domain containing 4	296	DH.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|filopodium|Golgi apparatus|lamellipodium|ruffle	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			ovary(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)					GGCACCATTCCTTAAGATGTA	0.313													51	53					0	0	0.000781405	0	0
SLC38A4	55089	broad.mit.edu	37	12	47186851	47186851	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:47186851C>T	uc001rpi.2	-	3	403	c.4G>A	c.(4-6)GAT>AAT	p.D2N	SLC38A4_uc001rpj.2_Missense_Mutation_p.D2N|SLC38A4_uc009zkl.2_Missense_Mutation_p.D2N	NM_018018	NP_060488	Q969I6	S38A4_HUMAN	solute carrier family 38, member 4	2	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Lung SC(27;0.192)|Renal(347;0.236)					TCCATGGGATCCATTTGAGCT	0.433													33	28					0	0	0.000953801	0	0
TUBA1C	84790	broad.mit.edu	37	12	49666155	49666155	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:49666155C>T	uc001rts.2	+	5	848	c.390C>T	c.(388-390)TCC>TCT	p.S130S	TUBA1C_uc010smh.1_Silent_p.S235S|TUBA1C_uc001rtt.1_Silent_p.S165S|uc010smi.1_Missense_Mutation_p.G145R	NM_032704	NP_116093	Q9BQE3	TBA1C_HUMAN	tubulin alpha 6	165					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity				0						GCAAGAAGTCCAAGCTGGAGT	0.547													20	12					0	0	0.00121646	0	0
KRT73	319101	broad.mit.edu	37	12	53002213	53002213	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:53002213C>T	uc001sas.2	-	9	1425	c.1390G>A	c.(1390-1392)GGG>AGG	p.G464R		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	464	Tail.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CCTGCCATCCCGGCCATGGAG	0.622													10	7					0	0	0.000673444	0	0
FRS2	10818	broad.mit.edu	37	12	69965945	69965945	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:69965945C>T	uc001suy.2	+	9	970	c.460C>T	c.(460-462)CCC>TCC	p.P154S	FRS2_uc001suz.2_Missense_Mutation_p.P154S|FRS2_uc009zrj.2_Missense_Mutation_p.P154S|FRS2_uc009zrk.2_Missense_Mutation_p.P154S	NM_006654	NP_006645	Q8WU20	FRS2_HUMAN	fibroblast growth factor receptor substrate 2	154					activation of MAPKK activity|activation of phospholipase C activity|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|transmembrane receptor protein tyrosine phosphatase signaling pathway	endomembrane system|endosome|integral to plasma membrane|membrane fraction	fibroblast growth factor receptor binding|insulin receptor binding|phosphatase activator activity|transmembrane receptor protein tyrosine kinase adaptor activity			prostate(1)|kidney(1)	2	Breast(13;2.15e-06)|Esophageal squamous(21;0.187)		Epithelial(6;2.94e-18)|Lung(24;9.68e-05)|OV - Ovarian serous cystadenocarcinoma(12;0.000984)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.0151)|Kidney(9;0.143)|LUSC - Lung squamous cell carcinoma(43;0.24)			TCCCCGATATCCCTCATTTGG	0.478													29	19					0	0	0.00127121	0	0
PTPRR	5801	broad.mit.edu	37	12	71148001	71148001	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:71148001G>T	uc001swi.1	-	5	1124	c.708C>A	c.(706-708)AGC>AGA	p.S236R	PTPRR_uc001swh.1_5'UTR|PTPRR_uc009zrs.2_Missense_Mutation_p.S85R|PTPRR_uc010stq.1_Missense_Mutation_p.S124R|PTPRR_uc010str.1_Missense_Mutation_p.S85R	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	236	Helical; (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		TAACAAAGATGCTGAGAAAAA	0.353													19	9					1.64113e-05	0.000142261	0.00152264	1	0
LGR5	8549	broad.mit.edu	37	12	71946885	71946885	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:71946885C>T	uc001swl.2	+	5	509	c.461C>T	c.(460-462)CCC>CTC	p.P154L	LGR5_uc001swm.2_Missense_Mutation_p.P154L|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	154	LRR 4.|Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						AGCTATGTGCCCCCAAGCTGT	0.498													79	63					0	0	0.000781405	0	0
ACSS3	79611	broad.mit.edu	37	12	81528708	81528708	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:81528708G>A	uc001szl.1	+	3	661	c.570G>A	c.(568-570)AGG>AGA	p.R190R	ACSS3_uc001szm.1_Silent_p.R189R	NM_024560	NP_078836	Q9H6R3	ACSS3_HUMAN	acyl-CoA synthetase short-chain family member 3	190						mitochondrion	acetate-CoA ligase activity|ATP binding			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4						CATGTGCAAGGATAGGTGCCA	0.433													23	22					0	0	0.000586117	0	0
MGAT4C	25834	broad.mit.edu	37	12	86373303	86373303	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:86373303G>A	uc001tai.3	-	8	2451	c.1201C>T	c.(1201-1203)CGG>TGG	p.R401W	MGAT4C_uc001tal.3_Missense_Mutation_p.R401W|MGAT4C_uc001taj.3_Missense_Mutation_p.R401W|MGAT4C_uc001tak.3_Missense_Mutation_p.R401W|MGAT4C_uc010sum.1_Missense_Mutation_p.R425W|MGAT4C_uc001tah.3_Missense_Mutation_p.R401W	NM_013244	NP_037376	Q9UBM8	MGT4C_HUMAN	alpha-1,3-mannosyl-glycoprotein	401	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-1,3-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(3)	3						TCATTTTGCCGATCTTCTGTT	0.348													25	22					0	0	0.000586117	0	0
NR1H4	9971	broad.mit.edu	37	12	100934528	100934528	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:100934528C>T	uc001tht.1	+	7	1068	c.1040C>T	c.(1039-1041)GCT>GTT	p.A347V	NR1H4_uc001thp.1_Missense_Mutation_p.A333V|NR1H4_uc001thq.1_Missense_Mutation_p.A337V|NR1H4_uc010svj.1_RNA|NR1H4_uc001thr.1_Missense_Mutation_p.A337V|NR1H4_uc010svk.1_Missense_Mutation_p.A286V|NR1H4_uc001ths.1_Missense_Mutation_p.A343V	NM_005123	NP_005114	Q96RI1	NR1H4_HUMAN	nuclear receptor subfamily 1, group H, member 4	347	Agonist binding (By similarity).|Ligand-binding.				bile acid metabolic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|thyroid hormone receptor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)|skin(1)	3						CTTCGTTCAGCTGAGATTTTC	0.393													36	36					0	0	0.000692331	0	0
HVCN1	84329	broad.mit.edu	37	12	111088039	111088040	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:111088039_111088040CC>TT	uc001trs.1	-	7	854_855	c.689_690GG>AA	c.(688-690)AGG>AAA	p.R230K	HVCN1_uc001trq.1_Missense_Mutation_p.R230K|HVCN1_uc001trt.1_Missense_Mutation_p.R230K|HVCN1_uc010syd.1_Missense_Mutation_p.R210K	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	230	Cytoplasmic (Potential).|Potential.				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						TCTGTTTTAACCTTAAGAGTTG	0.401													16	16					0	0	6.4e-05	0	0
SLC24A6	80024	broad.mit.edu	37	12	113748128	113748128	+	Missense_Mutation	SNP	C	T	T	rs142949596		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr12:113748128C>T	uc001tvc.2	-	12	1378	c.1168G>A	c.(1168-1170)GTC>ATC	p.V390I	SLC24A6_uc001tuz.2_Missense_Mutation_p.V95I|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_Missense_Mutation_p.V128I	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	390	Helical; Name=8; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						ACGACCCAGACGGGAACGAGG	0.552													12	33					0	0	0.00185496	0	0
TPTE2	93492	broad.mit.edu	37	13	20056686	20056686	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:20056686T>C	uc001umd.2	-	5	332	c.121A>G	c.(121-123)ATG>GTG	p.M41V	TPTE2_uc009zzk.2_Intron|TPTE2_uc009zzl.2_Missense_Mutation_p.M41V|TPTE2_uc001ume.2_Intron|TPTE2_uc009zzm.2_Intron|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	41						endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		CGTTCTAACATACTTTAGCCA	0.313													3	70					0	0	6.4e-05	0	0
USPL1	10208	broad.mit.edu	37	13	31233315	31233315	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:31233315C>T	uc001utc.2	+	9	3533	c.3101C>T	c.(3100-3102)CCA>CTA	p.P1034L	USPL1_uc001utd.2_Missense_Mutation_p.P705L|USPL1_uc001ute.1_Missense_Mutation_p.P705L	NM_005800	NP_005791	Q5W0Q7	USPL1_HUMAN	ubiquitin specific peptidase like 1	1034					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity	p.P1034S(1)		pancreas(2)|skin(1)	3		Lung SC(185;0.0257)|Breast(139;0.203)		all cancers(112;0.0306)|Epithelial(112;0.131)|OV - Ovarian serous cystadenocarcinoma(117;0.134)		AAGAAAAATCCATGTGAAGTT	0.408													15	61					0	0	0.000219431	0	0
KL	9365	broad.mit.edu	37	13	33635751	33635751	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:33635751G>A	uc001uus.2	+	4	2543	c.2535G>A	c.(2533-2535)GTG>GTA	p.V845V	KL_uc001uur.1_3'UTR	NM_004795	NP_004786	Q9UEF7	KLOT_HUMAN	klotho precursor	845	Glycosyl hydrolase-1 2.|Extracellular (Potential).				aging|carbohydrate metabolic process|insulin receptor signaling pathway|positive regulation of bone mineralization	extracellular space|extracellular space|integral to membrane|integral to plasma membrane|membrane fraction|soluble fraction	beta-glucosidase activity|beta-glucuronidase activity|cation binding|fibroblast growth factor binding|hormone activity|signal transducer activity|vitamin D binding			large_intestine(1)|ovary(1)|skin(1)	3	all_epithelial(80;0.133)	Ovarian(182;1.78e-06)|Breast(139;4.08e-05)|Hepatocellular(188;0.00886)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;7.13e-230)|all cancers(112;1.33e-165)|OV - Ovarian serous cystadenocarcinoma(117;1.09e-113)|Epithelial(112;3.79e-112)|Lung(94;8.52e-27)|LUSC - Lung squamous cell carcinoma(192;1.4e-13)|Kidney(163;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(186;5.63e-08)|BRCA - Breast invasive adenocarcinoma(63;1.41e-05)		CCAGTCAGGTGGCGGTAGTGC	0.483													24	30					0	0	0.000586117	0	0
FREM2	341640	broad.mit.edu	37	13	39264404	39264404	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:39264404G>A	uc001uwv.2	+	1	3232	c.2923G>A	c.(2923-2925)GAA>AAA	p.E975K		NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	975	CSPG 6.|Extracellular (Potential).				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		GACCAATGAGGAAACTGATGA	0.443													18	68					0	0	0.00074312	0	0
KIAA0564	23078	broad.mit.edu	37	13	42161701	42161701	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:42161701C>T	uc001uyj.2	-	42	5288	c.5218G>A	c.(5218-5220)GAG>AAG	p.E1740K		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1740	VWFA.					extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		CACACAGCCTCCATTGTGCGC	0.498													12	41					0	0	0.00136819	0	0
ATP7B	540	broad.mit.edu	37	13	52542601	52542601	+	Silent	SNP	G	A	A	rs138962570	by1000genomes	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:52542601G>A	uc001vfw.2	-	4	1843	c.1686C>T	c.(1684-1686)TCC>TCT	p.S562S	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Silent_p.S562S|ATP7B_uc001vfy.2_Silent_p.S451S|ATP7B_uc010tgt.1_Silent_p.S562S|ATP7B_uc010tgu.1_Silent_p.S562S|ATP7B_uc010tgv.1_Silent_p.S562S|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	562	Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TGTTGCCATCGGAGCCTGCGT	0.502									Wilson_disease				7	12					0	0	0.000157383	0	0
SLITRK6	84189	broad.mit.edu	37	13	86368401	86368401	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:86368401G>A	uc001vll.1	-	2	2702	c.2243C>T	c.(2242-2244)TCC>TTC	p.S748F	SLITRK6_uc010afe.1_Missense_Mutation_p.S201F	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	748	Cytoplasmic (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		ATCTTGGAAGGATAAAAATTC	0.368													54	168					0	0	0.000781405	0	0
SLC15A1	6564	broad.mit.edu	37	13	99354778	99354778	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:99354778C>T	uc001vno.2	-	18	1499	c.1422G>A	c.(1420-1422)AAG>AAA	p.K474K		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	474	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	TAAGACCATCCTTTACCTGAG	0.289													18	92					0	0	0.00047179	0	0
COL4A1	1282	broad.mit.edu	37	13	110826835	110826835	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:110826835G>A	uc001vqw.3	-	39	3486	c.3364C>T	c.(3364-3366)CTC>TTC	p.L1122F	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1122	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			AATCCTGGGAGGCCTTTGTCA	0.493													13	28					0	0	0.00074312	0	0
ZNF828	283489	broad.mit.edu	37	13	115090980	115090981	+	Missense_Mutation	DNP	CG	AT	AT	rs142125006	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:115090980_115090981CG>AT	uc010ahb.2	+	3	1992_1993	c.1663_1664CG>AT	c.(1663-1665)CGG>ATG	p.R555M	ZNF828_uc001vuv.2_Missense_Mutation_p.R555M|ZNF828_uc010tko.1_Missense_Mutation_p.R555M	NM_001164144	NP_001157616	Q96JM3	ZN828_HUMAN	zinc finger protein 828	555	Mediates localization to the spindle and the kinetochore and is required for the attachment of spindle microtubules to the kinetochore.|Pro-rich.				attachment of spindle microtubules to kinetochore involved in mitotic sister chromatid segregation|protein localization to kinetochore|protein localization to microtubule|sister chromatid biorientation	condensed chromosome kinetochore|cytoplasm|nucleus|spindle	nucleic acid binding|protein binding|zinc ion binding			ovary(2)	2	Lung NSC(43;0.00299)|all_neural(89;0.0337)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_epithelial(44;0.122)|all_lung(25;0.123)	BRCA - Breast invasive adenocarcinoma(86;0.104)	OV - Ovarian serous cystadenocarcinoma(48;0.193)|Epithelial(10;0.197)		TCCAGAGCCCCGGAAGCATGCC	0.51													10	269					0	0	6.4e-05	0	0
OR4K17	390436	broad.mit.edu	37	14	20586246	20586246	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:20586246G>A	uc001vwo.1	+	1	681	c.681G>A	c.(679-681)CAG>CAA	p.Q227Q		NM_001004715	NP_001004715	Q8NGC6	OR4KH_HUMAN	olfactory receptor, family 4, subfamily K,	199	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)	3	all_cancers(95;0.00108)		Epithelial(56;7.58e-07)|all cancers(55;3.77e-06)	GBM - Glioblastoma multiforme(265;0.0144)		ATTTTGTACAGGTAGTCATTG	0.413													56	39					0	0	0.000781405	0	0
MAPK1IP1L	93487	broad.mit.edu	37	14	55529570	55529570	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:55529570C>T	uc001xbq.1	+	3	417	c.253C>T	c.(253-255)CCA>TCA	p.P85S		NM_144578	NP_653179	Q8NDC0	MISSL_HUMAN	MAPK-interacting and spindle-stabilizing	85	Pro-rich.										0						TCCAGGACCCCCAGCACCCTT	0.627													7	9					0	0	8.12818e-05	0	0
KCNH5	27133	broad.mit.edu	37	14	63174630	63174630	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:63174630T>A	uc001xfx.2	-	11	2614	c.2563A>T	c.(2563-2565)AAA>TAA	p.K855*	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	855	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		AGTGGGTTTTTGGTCACACTG	0.458													27	18					0	0	0.000878237	0	0
ADAM21P1	145241	broad.mit.edu	37	14	70713587	70713587	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:70713587C>T	uc010ttg.1	-	1	932	c.281G>A	c.(280-282)GGA>GAA	p.G94E		NR_003951				SubName: Full=ADAM21-like protein;												0						GAAAACATTTCCTTGATTCCA	0.378													20	24					0	0	0.000958276	0	0
C14orf118	55668	broad.mit.edu	37	14	76662307	76662307	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:76662307C>G	uc001xsh.2	+	9	1366	c.1280C>G	c.(1279-1281)CCC>CGC	p.P427R	C14orf118_uc001xsi.2_Missense_Mutation_p.P422R|C14orf118_uc001xsl.2_RNA|uc001xsm.2_5'Flank	NM_017926	NP_060396	Q9NWQ4	CN118_HUMAN	hypothetical protein LOC55668 isoform 1	427										ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.0172)		TTGTCTAGCCCCAGTGCAGGT	0.308													3	41					0	0	6.4e-05	0	0
BTBD7	55727	broad.mit.edu	37	14	93730210	93730210	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:93730210G>A	uc001ybo.2	-	4	1618	c.1292C>T	c.(1291-1293)TCC>TTC	p.S431F	BTBD7_uc010aur.2_Intron|BTBD7_uc010two.1_Intron|BTBD7_uc001ybp.2_Missense_Mutation_p.S80F|BTBD7_uc001ybq.3_Missense_Mutation_p.S346F	NM_001002860	NP_001002860	Q9P203	BTBD7_HUMAN	BTB (POZ) domain containing 7 isoform 1	431										pancreas(1)	1		all_cancers(154;0.08)		Epithelial(152;0.196)|COAD - Colon adenocarcinoma(157;0.212)|all cancers(159;0.223)		CATGACCTGGGAAAATTCCTC	0.418													37	28					0	0	0.00111076	0	0
IFI27L1	122509	broad.mit.edu	37	14	94568857	94568857	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:94568857C>T	uc001ycl.2	+	5	466	c.258C>T	c.(256-258)ATC>ATT	p.I86I	IFI27L1_uc001yck.2_Silent_p.I86I	NM_206949	NP_996832	Q96BM0	I27L1_HUMAN	interferon, alpha-inducible protein 27-like 1	86	Helical; (Potential).					integral to membrane					0						CTAAAGTTATCGGGGGCTTTG	0.597													17	11					0	0	0.000958276	0	0
SERPINA13	388007	broad.mit.edu	37	14	95109969	95109969	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:95109969G>A	uc001ydt.2	+	3	1006	c.918G>A	c.(916-918)GGG>GGA	p.G306G		NR_015340				RecName: Full=Serpin A13; Flags: Precursor;											lung(1)|skin(1)	2						ACCACGCTGGGAACACCACCA	0.582													12	7					0	0	0.00185496	0	0
RTL1	388015	broad.mit.edu	37	14	101348386	101348386	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr14:101348386C>T	uc010txj.1	-	1	2799	c.2740G>A	c.(2740-2742)GAG>AAG	p.E914K	uc001yig.3_5'Flank|MIR127_hsa-mir-127|MI0000472_5'Flank|MIR432_hsa-mir-432|MI0003133_5'Flank|uc010txk.1_5'Flank|MIR136_hsa-mir-136|MI0000475_5'Flank	NM_001134888	NP_001128360	A6NKG5	RTL1_HUMAN	retrotransposon-like 1	914										pancreas(1)	1						TACTCAACCTCGATAGGGGAG	0.577													7	5					0	0	8.12818e-05	0	0
MAGEL2	54551	broad.mit.edu	37	15	23889196	23889196	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:23889196C>T	uc001ywj.3	-	1	1980	c.1885G>A	c.(1885-1887)GAA>AAA	p.E629K		NM_019066	NP_061939			MAGE-like protein 2												0		all_cancers(20;1.78e-24)|all_epithelial(15;7.75e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000625)|Colorectal(260;0.14)		all cancers(64;1.84e-06)|Epithelial(43;1.2e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)		GTGTCAGGTTCATCCTCATCT	0.572													14	11					0	0	0.000422831	0	0
HERC2	8924	broad.mit.edu	37	15	28420712	28420712	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:28420712G>A	uc001zbj.2	-	64	9883	c.9777C>T	c.(9775-9777)ATC>ATT	p.I3259I		NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	3259	RCC1 11.				DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		CCACATGCACGATCTTCTTCC	0.637													10	9					0	0	0.000978159	0	0
EXD1	161829	broad.mit.edu	37	15	41483761	41483761	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:41483761G>A	uc001znk.2	-	8	760	c.569C>T	c.(568-570)TCC>TTC	p.S190F	EXD1_uc001znj.2_5'Flank|EXD1_uc010ucv.1_Missense_Mutation_p.S248F	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	190					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						CGTTTCCATGGAAAACTGAAG	0.378													18	17					0	0	0.000295444	0	0
EXD1	161829	broad.mit.edu	37	15	41483766	41483766	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:41483766C>T	uc001znk.2	-	8	755	c.564G>A	c.(562-564)CAG>CAA	p.Q188Q	EXD1_uc001znj.2_5'Flank|EXD1_uc010ucv.1_Silent_p.Q246Q	NM_152596	NP_689809	Q8NHP7	EXD1_HUMAN	exonuclease 3'-5' domain containing 1	188					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding			ovary(1)	1						CCATGGAAAACTGAAGTACAT	0.378													16	16					0	0	0.00188189	0	0
TGM5	9333	broad.mit.edu	37	15	43552268	43552268	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:43552268A>T	uc001zrd.1	-	3	426	c.418T>A	c.(418-420)TTC>ATC	p.F140I	TGM5_uc001zre.1_Intron	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	140					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	CAGGGATTGAAAAGCAGGATG	0.597													18	16					0	0	0.00152264	0	0
CATSPER2	117155	broad.mit.edu	37	15	43931985	43931985	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:43931985G>A	uc001zsh.2	-	6	788	c.573C>T	c.(571-573)CCC>CCT	p.P191P	CATSPER2_uc010bdm.2_RNA|CATSPER2_uc001zsi.2_Silent_p.P191P|CATSPER2_uc001zsj.2_Silent_p.P191P|CATSPER2_uc001zsk.2_3'UTR	NM_172095	NP_742093	Q96P56	CTSR2_HUMAN	sperm-associated cation channel 2 isoform 2	191	Helical; Name=Segment S3; (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|protein binding|voltage-gated ion channel activity			ovary(1)	1		all_cancers(109;3.26e-15)|all_epithelial(112;1.48e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.027)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.56e-07)		CCACAACCTCGGGAAGCAGGG	0.498													18	17					0	0	0.00127121	0	0
MYO1E	4643	broad.mit.edu	37	15	59548558	59548558	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:59548558G>A	uc002aga.2	-	4	629	c.257C>T	c.(256-258)CCA>CTA	p.P86L		NM_004998	NP_004989	Q12965	MYO1E_HUMAN	myosin IE	86	Myosin head-like.				actin filament-based movement	myosin complex	actin binding|ATP binding|ATPase activity, coupled|calmodulin binding|microfilament motor activity			central_nervous_system(3)	3				all cancers(107;0.207)		ATAGATATGTGGTGGGTTTTC	0.303													17	11					0	0	0.00121646	0	0
LCTL	197021	broad.mit.edu	37	15	66844489	66844489	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:66844489G>A	uc002aqc.2	-	10	1348	c.1216C>T	c.(1216-1218)CCC>TCC	p.P406S	LCTL_uc002aqd.3_Missense_Mutation_p.P233S|LCTL_uc010bhw.2_Missense_Mutation_p.P104S	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	406	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						ACATATATGGGAGGATCACCG	0.358													26	26					0	0	0.00178596	0	0
TBC1D21	161514	broad.mit.edu	37	15	74180852	74180852	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:74180852G>A	uc002avz.2	+	10	1059	c.976G>A	c.(976-978)GAT>AAT	p.D326N	TBC1D21_uc010ulc.1_Missense_Mutation_p.D290N	NM_153356	NP_699187	Q8IYX1	TBC21_HUMAN	TBC1 domain family, member 21	326						intracellular	Rab GTPase activator activity			ovary(2)	2						CATCCAGAAGGATGTAAGTTG	0.333													9	16					0	0	0.000673444	0	0
ADAMTS7	11173	broad.mit.edu	37	15	79056996	79056996	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:79056996G>A	uc002bej.3	-	20	4531	c.4320C>T	c.(4318-4320)TCC>TCT	p.S1440S		NM_014272	NP_055087	Q9UKP4	ATS7_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1440	TSP type-1 5.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0						CATCCCGGCCGGAGCTACAGC	0.716													6	5					0	0	0.00116845	0	0
RASGRF1	5923	broad.mit.edu	37	15	79298587	79298587	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:79298587G>A	uc002beq.2	-	15	2430	c.2055C>T	c.(2053-2055)ATC>ATT	p.I685I	RASGRF1_uc002bep.2_Silent_p.I672I|RASGRF1_uc010blm.1_Silent_p.I594I|RASGRF1_uc002ber.3_Silent_p.I672I|RASGRF1_uc010unh.1_Silent_p.I80I	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	685	N-terminal Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						CCAGGACCACGATGGCGGTGG	0.602													24	24					0	0	0.000586117	0	0
EFTUD1	79631	broad.mit.edu	37	15	82444475	82444475	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:82444475G>A	uc002bgt.1	-	18	2489	c.2320C>T	c.(2320-2322)CGT>TGT	p.R774C	EFTUD1_uc002bgs.1_Missense_Mutation_p.R145C|EFTUD1_uc002bgu.1_Missense_Mutation_p.R723C	NM_024580	NP_078856	Q7Z2Z2	ETUD1_HUMAN	elongation factor Tu GTP binding domain	774					mature ribosome assembly		GTP binding|GTPase activity|ribosome binding|translation elongation factor activity			ovary(1)	1						TCCATAGAACGAATCAAATCA	0.418													25	25					0	0	0.000586117	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84705531	84705531	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:84705531C>T	uc002bjz.3	+	29	4985	c.4761C>T	c.(4759-4761)ACC>ACT	p.T1587T	ADAMTSL3_uc010bmu.1_Silent_p.T1587T	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	1587						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TCAGACCCACCTTAAGAAGGA	0.478													5	9					0	0	0.00116845	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85053188	85053188	+	RNA	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:85053188C>G	uc002bkm.2	-	9		c.1859G>C			uc002bkl.1_5'Flank	NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						CCCTGTTCTCCGCAGCCCGAA	0.488													3	7					0	0	0.00024832	0	0
MCTP2	55784	broad.mit.edu	37	15	95013671	95013671	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr15:95013671G>A	uc002btj.2	+	20	2535	c.2470G>A	c.(2470-2472)GGC>AGC	p.G824S	MCTP2_uc010boj.2_Missense_Mutation_p.G553S|MCTP2_uc010bok.2_Missense_Mutation_p.G769S|MCTP2_uc002btl.2_Missense_Mutation_p.G412S	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	824					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TTTAATCTGGGGTAAGTTTGG	0.408													34	32					0	0	0.00058488	0	0
SRRM2	23524	broad.mit.edu	37	16	2815721	2815721	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:2815721C>T	uc002crk.2	+	11	5741	c.5192C>T	c.(5191-5193)TCT>TTT	p.S1731F	SRRM2_uc002crj.1_Missense_Mutation_p.S1635F|SRRM2_uc002crl.1_Missense_Mutation_p.S1731F|SRRM2_uc010bsu.1_Missense_Mutation_p.S1635F	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	1731	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						CCCTCAGTGTCTTCCCCGGAG	0.592													13	15					0	0	0.000308642	0	0
DNAJA3	9093	broad.mit.edu	37	16	4494683	4494683	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:4494683C>T	uc002cwk.2	+	7	975	c.950C>T	c.(949-951)ACC>ATC	p.T317I	DNAJA3_uc002cwl.2_Missense_Mutation_p.T317I|DNAJA3_uc010uxk.1_Missense_Mutation_p.T164I	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	317					activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						GATGGCCAGACCGTGAGGATG	0.398													7	23					0	0	0.000157383	0	0
ACSM1	116285	broad.mit.edu	37	16	20638573	20638573	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:20638573C>T	uc002dhm.1	-	10	1433	c.1365G>A	c.(1363-1365)AAG>AAA	p.K455K	ACSM1_uc002dhn.1_Intron|ACSM1_uc010bwg.1_Silent_p.K455K	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	455					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CTTCATCCATCTTACCTCTGT	0.507													47	221					0	0	0.000781405	0	0
VWA3A	146177	broad.mit.edu	37	16	22130236	22130237	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:22130236_22130237GG>AA	uc010vbq.1	+	12	1100_1101	c.1004_1005GG>AA	c.(1003-1005)CGG>CAA	p.R335Q	VWA3A_uc010bxd.2_5'Flank|VWA3A_uc010bxc.2_Missense_Mutation_p.R322Q	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	335	Potential.					extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		TACACCAGCCGGGACATGGATG	0.604													10	24					0	0	6.4e-05	0	0
PLK1	5347	broad.mit.edu	37	16	23700835	23700835	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:23700835C>T	uc002dlz.1	+	9	1499	c.1446C>T	c.(1444-1446)TTC>TTT	p.F482F		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	482					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		TTAAATATTTCCGCAATTACA	0.552													18	43					0	0	0.00152264	0	0
IL4R	3566	broad.mit.edu	37	16	27374897	27374897	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:27374897C>T	uc002don.2	+	11	2466	c.2224C>T	c.(2224-2226)CCT>TCT	p.P742S	IL4R_uc002dop.3_Missense_Mutation_p.P727S|IL4R_uc010bxy.2_Missense_Mutation_p.P742S|IL4R_uc002doo.2_Missense_Mutation_p.P582S	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	742	Cytoplasmic (Potential).				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						CATGGCCAGTCCTTGCTGTGG	0.637													8	31					0	0	0.000157383	0	0
ITGAM	3684	broad.mit.edu	37	16	31336917	31336917	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:31336917C>T	uc002ebq.2	+	21	2700	c.2602C>T	c.(2602-2604)CAC>TAC	p.H868Y	ITGAM_uc002ebr.2_Missense_Mutation_p.H869Y|ITGAM_uc010can.2_Missense_Mutation_p.H274Y|ITGAM_uc002ebs.1_Missense_Mutation_p.H274Y	NM_000632	NP_000623	P11215	ITAM_HUMAN	integrin alpha M isoform 2 precursor	868	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration	integrin complex	glycoprotein binding|receptor activity			kidney(1)	1						CAGCATAAACCACCCCATCTT	0.542													11	15					0	0	0.000978159	0	0
SLC6A2	6530	broad.mit.edu	37	16	55735810	55735810	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:55735810C>T	uc002eif.2	+	14	1905	c.1794C>T	c.(1792-1794)CAC>CAT	p.H598H	SLC6A2_uc010ccd.2_Silent_p.H542H|SLC6A2_uc002eig.2_Silent_p.H598H|SLC6A2_uc002eih.2_Silent_p.H598H|SLC6A2_uc002eii.2_Silent_p.H493H|SLC6A2_uc002eij.2_Silent_p.H312H	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	598	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity			lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	AGAACGAGCACCACCTGGTGG	0.617											OREG0023807	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	32					0	0	0.000978159	0	0
SLC12A3	6559	broad.mit.edu	37	16	56920313	56920313	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:56920313C>T	uc010ccm.2	+	16	1992	c.1963C>T	c.(1963-1965)CGC>TGC	p.R655C	SLC12A3_uc002ekd.3_Missense_Mutation_p.R655C|SLC12A3_uc010ccn.2_Missense_Mutation_p.R654C	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	655			R -> C (in GS).|R -> L (in GS).|R -> H (in GS).		sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CCCCAACTTCCGCCCGGCCCT	0.672													6	30					0	0	0.00116845	0	0
CDH8	1006	broad.mit.edu	37	16	61891121	61891121	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:61891121G>C	uc002eog.1	-	4	821	c.569C>G	c.(568-570)ACT>AGT	p.T190S	CDH8_uc002eoh.2_5'UTR	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	190	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GTCGGTCGCAGTGACGTTAGT	0.368													10	36					0	0	0.000978159	0	0
WWP2	11060	broad.mit.edu	37	16	69965485	69965485	+	Splice_Site	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:69965485T>C	uc002exu.1	+	16	1682	c.1593_splice	c.e16+2	p.Q531_splice	WWP2_uc002exv.1_Splice_Site_p.Q531_splice|WWP2_uc010vlm.1_Splice_Site_p.Q415_splice|WWP2_uc010vln.1_Splice_Site_p.Q149_splice|WWP2_uc002exw.1_Splice_Site_p.Q92_splice|uc002exx.1_5'Flank|MIR140_hsa-mir-140|MI0000456_5'Flank	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase						entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						TTCCAACAGGTTAGATCATGG	0.507													23	64					0	0	0.00047179	0	0
Unknown	0	broad.mit.edu	37	16	70268158	70268158	+	RNA	SNP	A	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:70268158A>C	uc010cfp.1	-	3		c.257T>G								Homo sapiens cDNA, FLJ98908.																		TTCTTCATTAAAACAGCTACT	0.333													2	8					0	0	6.4e-05	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76572238	76572238	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:76572238G>A	uc002feu.1	+	21	3605	c.3220_splice	c.e21+1	p.G1074_splice	CNTNAP4_uc002fev.1_Splice_Site_p.G938_splice|CNTNAP4_uc010chb.1_Splice_Site_p.G1001_splice|CNTNAP4_uc002fex.1_Splice_Site_p.G1077_splice	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1						cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						GCCAAAAATGGTGAGTTCTTT	0.358													46	45					0	0	0.000781405	0	0
USP10	9100	broad.mit.edu	37	16	84801964	84801964	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:84801964G>A	uc002fii.2	+	11	2140	c.1998G>A	c.(1996-1998)GAG>GAA	p.E666E	USP10_uc010voe.1_Silent_p.E670E|USP10_uc010vof.1_Silent_p.E228E|USP10_uc002fij.2_Silent_p.E192E	NM_005153	NP_005144	Q14694	UBP10_HUMAN	ubiquitin specific protease 10	666					DNA damage response, signal transduction by p53 class mediator|DNA repair|protein deubiquitination|ubiquitin-dependent protein catabolic process	early endosome|intermediate filament cytoskeleton|nucleus	cystic fibrosis transmembrane conductance regulator binding|p53 binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity				0						CCAAACAAGAGGTATGTTCAC	0.289													6	9					0	0	8.12818e-05	0	0
GLOD4	51031	broad.mit.edu	37	17	680169	680169	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:680169A>G	uc002frv.2	-	4	321	c.245T>C	c.(244-246)TTT>TCT	p.F82S	GLOD4_uc002frt.2_Missense_Mutation_p.F11S|GLOD4_uc002fru.2_Missense_Mutation_p.F67S|GLOD4_uc010vqc.1_Missense_Mutation_p.F58S	NM_016080	NP_057164	Q9HC38	GLOD4_HUMAN	glyoxalase domain containing 4	82						mitochondrion					0				UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TTCTGCGACAAAATGATCATC	0.378													9	45					0	0	0.00136819	0	0
RPA1	6117	broad.mit.edu	37	17	1783889	1783889	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:1783889G>A	uc002fto.2	+	12	1260	c.1145G>A	c.(1144-1146)CGA>CAA	p.R382Q		NM_002945	NP_002936	P27694	RFA1_HUMAN	replication protein A1	382					cell cycle checkpoint|DNA recombinase assembly|DNA strand elongation involved in DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	actin cytoskeleton|cytoplasm|DNA replication factor A complex|PML body	metal ion binding|protein binding|single-stranded DNA binding				0						AAAGGAGCCCGAGTCTCTGAT	0.483								NER					27	29					0	0	0.000720815	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2867270	2867270	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:2867270G>A	uc010ckd.2	+	7	490	c.400G>A	c.(400-402)GAG>AAG	p.E134K	RAP1GAP2_uc010cke.2_Missense_Mutation_p.E119K	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	134					regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						CTGTGAGGAGGAGGAAGAGGA	0.602													7	22					0	0	8.12818e-05	0	0
OR1G1	8390	broad.mit.edu	37	17	3030147	3030147	+	Silent	SNP	C	T	T	rs146714964	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:3030147C>T	uc002fvc.1	-	1	699	c.699G>A	c.(697-699)GGG>GGA	p.G233G		NM_003555	NP_003546	P47890	OR1G1_HUMAN	olfactory receptor, family 1, subfamily G,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTTCCGCTTCCCCTGAGCTG	0.488													16	22					0	0	0.00121646	0	0
C17orf68	80169	broad.mit.edu	37	17	8132659	8132659	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:8132659G>A	uc002gkq.3	-	19	3176	c.3117C>T	c.(3115-3117)CTC>CTT	p.L1039L	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	1039					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						ACACCCAGAAGAGCTGAAGGC	0.567													29	44					0	0	0.00178596	0	0
MYOCD	93649	broad.mit.edu	37	17	12626325	12626325	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:12626325G>A	uc002gnn.2	+	5	714	c.415G>A	c.(415-417)GGT>AGT	p.G139S	MYOCD_uc002gno.2_Missense_Mutation_p.G139S|MYOCD_uc002gnp.1_Missense_Mutation_p.G43S	NM_153604	NP_705832	Q8IZQ8	MYCD_HUMAN	myocardin isoform 2	139					cardiac muscle cell differentiation|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|positive regulation of smooth muscle cell differentiation|positive regulation of smooth muscle contraction|positive regulation of transcription from RNA polymerase II promoter involved in myocardial precursor cell differentiation|regulation of histone acetylation|smooth muscle cell differentiation	nucleus	nucleic acid binding|RNA polymerase II transcription factor binding transcription factor activity|transcription factor binding			central_nervous_system(2)|skin(2)|ovary(1)	5				UCEC - Uterine corpus endometrioid carcinoma (92;0.0969)		GGCCATAAAAGGTAGTTAGAA	0.478													27	50					0	0	0.000339439	0	0
KRT40	125115	broad.mit.edu	37	17	39138585	39138585	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:39138585G>A	uc010cxh.1	-	5	822	c.661C>T	c.(661-663)CTT>TTT	p.L221F	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	221	Rod.|Coil 1B.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				TTAAGGCAAAGGAGATCTTCC	0.483													11	38					0	0	0.000673444	0	0
KRT38	8687	broad.mit.edu	37	17	39596778	39596778	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:39596778C>T	uc002hwq.1	-	1	819	c.396G>A	c.(394-396)CTG>CTA	p.L132L		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38	132	Coil 1A.|Rod.					intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				GTGTGGCCTCCAGCTCCGCAT	0.592													25	37					0	0	0.00106085	0	0
MAPT	4137	broad.mit.edu	37	17	44101502	44101502	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:44101502G>A	uc002ijr.3	+	14	2562	c.2242G>A	c.(2242-2244)GAG>AAG	p.E748K	MAPT_uc010dau.2_Missense_Mutation_p.E766K|MAPT_uc002ijs.3_Missense_Mutation_p.E431K|MAPT_uc002ijx.3_Missense_Mutation_p.E402K|MAPT_uc002ijt.3_Missense_Mutation_p.E373K|MAPT_uc002iju.3_Missense_Mutation_p.E342K|MAPT_uc002ijv.3_Missense_Mutation_p.E349K	NM_016835	NP_058519	P10636	TAU_HUMAN	microtubule-associated protein tau isoform 1	748					cellular component disassembly involved in apoptosis|microtubule cytoskeleton organization|negative regulation of microtubule depolymerization|positive regulation of axon extension|positive regulation of microtubule polymerization|regulation of autophagy	axon|cytosol|growth cone|microtubule|microtubule associated complex|nuclear periphery|plasma membrane|tubulin complex	apolipoprotein E binding|enzyme binding|identical protein binding|lipoprotein particle binding|microtubule binding|protein binding|SH3 domain binding|structural constituent of cytoskeleton			pancreas(1)	1		Melanoma(429;0.216)				GCTAGCTGACGAGGTGTCTGC	0.572													13	33					0	0	0.000219431	0	0
FAM117A	81558	broad.mit.edu	37	17	47788722	47788722	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:47788722C>T	uc002ipk.2	-	8	1326	c.1257G>A	c.(1255-1257)CGG>CGA	p.R419R	FAM117A_uc010wlz.1_Silent_p.R147R	NM_030802	NP_110429	Q9C073	F117A_HUMAN	family with sequence similarity 117, member A	419	Pro-rich.									ovary(1)	1						CCGGATCCTTCCGAGGTGGTG	0.637													5	30					0	0	0.00116845	0	0
TOM1L1	10040	broad.mit.edu	37	17	53024633	53024634	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:53024633_53024634GG>AA	uc002iud.2	+	12	1317_1318	c.1142_1143GG>AA	c.(1141-1143)AGG>AAA	p.R381K	TOM1L1_uc010dca.1_Missense_Mutation_p.R381K|TOM1L1_uc010wnb.1_Missense_Mutation_p.R374K|TOM1L1_uc010wnc.1_Missense_Mutation_p.R304K|TOM1L1_uc010dbz.2_Missense_Mutation_p.R304K|TOM1L1_uc010wnd.1_Missense_Mutation_p.R269K|TOM1L1_uc010dcb.1_RNA	NM_005486	NP_005477	O75674	TM1L1_HUMAN	target of myb1-like 1	381					intracellular protein transport|ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway	cytosol|endosome membrane|Golgi stack|lysosome	SH3 domain binding|ubiquitin binding			ovary(1)	1						TTTGCCCAAAGGACCAGCCAAA	0.371													17	32					0	0	6.4e-05	0	0
MSI2	124540	broad.mit.edu	37	17	55752377	55752378	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:55752377_55752378CC>TT	uc002iuz.1	+	12	1008_1009	c.835_836CC>TT	c.(835-837)CCA>TTA	p.P279L	MSI2_uc010wnm.1_Missense_Mutation_p.P275L	NM_138962	NP_620412	Q96DH6	MSI2H_HUMAN	musashi 2 isoform a	279						cytoplasm	nucleotide binding|RNA binding			central_nervous_system(1)|pancreas(1)	2	Breast(9;1.78e-08)			GBM - Glioblastoma multiforme(1;0.0025)		GGCCAACAGCCCAGGACCTGTC	0.678			T	HOXA9	CML								35	90					0	0	6.4e-05	0	0
BRIP1	83990	broad.mit.edu	37	17	59858249	59858249	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:59858249C>T	uc002izk.1	-	12	1887	c.1746G>A	c.(1744-1746)CAG>CAA	p.Q582Q	BRIP1_uc002izl.1_5'UTR	NM_032043	NP_114432	Q9BX63	FANCJ_HUMAN	BRCA1 interacting protein C-terminal helicase 1	582					DNA damage checkpoint|double-strand break repair|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding			ovary(1)	1						CTGCAGTTTTCTGTCGTGAAC	0.368			F|N|Mis			AML|leukemia|breast		Direct_reversal_of_damage|Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				58	92					0	0	0.000781405	0	0
ACE	1636	broad.mit.edu	37	17	61564371	61564371	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:61564371G>A	uc002jau.1	+	15	2264	c.2242G>A	c.(2242-2244)GAA>AAA	p.E748K	ACE_uc002jav.1_Missense_Mutation_p.E174K|ACE_uc010ddv.1_5'UTR|ACE_uc010wpj.1_Missense_Mutation_p.E174K|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Missense_Mutation_p.E58K	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	748	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GTTGGATATGGAAACCACCTA	0.592													40	55					0	0	0.000781405	0	0
SDK2	54549	broad.mit.edu	37	17	71354325	71354325	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:71354325C>T	uc010dfm.2	-	40	5486	c.5486G>A	c.(5485-5487)GGC>GAC	p.G1829D	SDK2_uc002jjt.3_Missense_Mutation_p.G969D|SDK2_uc010dfn.2_Missense_Mutation_p.G1508D	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1829	Fibronectin type-III 13.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GATGGGCACGCCAGGCGGTCC	0.647													42	101					0	0	0.000437636	0	0
SDK2	54549	broad.mit.edu	37	17	71429938	71429938	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:71429938A>T	uc010dfm.2	-	10	1245	c.1245T>A	c.(1243-1245)GAT>GAA	p.D415E	SDK2_uc010dfn.2_Missense_Mutation_p.D94E	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	415	Ig-like C2-type 5.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						CTGACATGCCATCGATCACCG	0.592													5	4					0	0	0.000157383	0	0
MFSD11	79157	broad.mit.edu	37	17	74733091	74733091	+	Translation_Start_Site	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:74733091G>A	uc002jta.2	+	1	820	c.-153G>A	c.(-155--151)TGGTG>TGATG		SFRS2_uc002jsv.2_Missense_Mutation_p.T51I|SFRS2_uc002jsw.1_5'Flank|SFRS2_uc002jsx.1_RNA|SFRS2_uc002jsy.3_Missense_Mutation_p.T51I|SFRS2_uc010wtg.1_Missense_Mutation_p.T51I|MFSD11_uc002jsz.1_RNA|MIR636_hsa-mir-636|MI0003651_5'Flank|MFSD11_uc002jtb.2_5'Flank|MFSD11_uc010dha.2_5'Flank|MFSD11_uc002jtc.2_5'Flank|MFSD11_uc002jtd.3_5'Flank|MFSD11_uc010dhb.2_5'Flank|MFSD11_uc002jte.2_5'Flank	NM_024311	NP_077287	O43934	MFS11_HUMAN	major facilitator superfamily domain containing							integral to membrane				ovary(1)	1						GGACTCCTTGGTGTAGCGGTC	0.672													4	14					0	0	0.000602214	0	0
TBC1D16	125058	broad.mit.edu	37	17	77915897	77915897	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:77915897G>A	uc002jxj.2	-	11	2133	c.2017C>T	c.(2017-2019)CTG>TTG	p.L673L	TBC1D16_uc002jxh.2_Silent_p.L311L|TBC1D16_uc002jxi.2_Silent_p.L298L	NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	673						intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			TGCATGGCCAGGTTTCCGAAG	0.647													7	18					0	0	8.12818e-05	0	0
TBCD	6904	broad.mit.edu	37	17	80887047	80887047	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:80887047C>T	uc002kfz.2	+	31	2882	c.2752C>T	c.(2752-2754)CGT>TGT	p.R918C	TBCD_uc002kfy.1_Missense_Mutation_p.R918C|TBCD_uc002kgb.1_Missense_Mutation_p.R243C|TBCD_uc002kgc.2_Missense_Mutation_p.R63C|TBCD_uc002kgd.2_5'Flank	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	918					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			TGACCGTTTCCGTGCTCACGC	0.607													14	18					0	0	0.00074312	0	0
B3GNTL1	146712	broad.mit.edu	37	17	80915340	80915340	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr17:80915340G>A	uc002kgg.1	-	9	770	c.756C>T	c.(754-756)TTC>TTT	p.F252F	B3GNTL1_uc002kgf.1_Silent_p.F141F|B3GNTL1_uc002kge.1_RNA	NM_001009905	NP_001009905	Q67FW5	B3GNL_HUMAN	UDP-GlcNAc:betaGal	252							transferase activity, transferring glycosyl groups			ovary(1)|pancreas(1)	2	Breast(20;0.000443)|all_neural(118;0.0779)	all_cancers(8;0.0396)|all_epithelial(8;0.0556)	BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			GCTCTTCCAGGAAGCGGACGC	0.672													8	11					0	0	0.000157383	0	0
NDC80	10403	broad.mit.edu	37	18	2595414	2595414	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:2595414G>A	uc002kli.2	+	11	1198	c.1016_splice	c.e11-1	p.E339_splice		NM_006101	NP_006092	O14777	NDC80_HUMAN	kinetochore associated 2						attachment of spindle microtubules to kinetochore|cell division|establishment of mitotic spindle orientation|mitotic prometaphase|mitotic sister chromatid segregation|mitotic spindle organization|phosphatidylinositol-mediated signaling	condensed nuclear chromosome outer kinetochore|cytosol|Ndc80 complex	protein binding			ovary(1)	1						TTCCAACACAGAACTAGAATG	0.328													19	47					0	0	0.00074312	0	0
EMILIN2	84034	broad.mit.edu	37	18	2891242	2891242	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:2891242G>A	uc002kln.2	+	4	1276	c.1117G>A	c.(1117-1119)GAA>AAA	p.E373K		NM_032048	NP_114437	Q9BXX0	EMIL2_HUMAN	elastin microfibril interfacer 2 precursor	373	Potential.				cell adhesion	collagen	extracellular matrix constituent conferring elasticity|protein binding			skin(2)|ovary(1)	3				READ - Rectum adenocarcinoma(2;0.1)		AGGGGAGAAGGAAACAAGCCT	0.502													19	37					0	0	0.000958276	0	0
MC5R	4161	broad.mit.edu	37	18	13826027	13826027	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:13826027C>T	uc010xaf.1	+	1	263	c.263C>T	c.(262-264)TCC>TTC	p.S88F		NM_005913	NP_005904	P33032	MC5R_HUMAN	melanocortin 5 receptor	88	Helical; Name=2; (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocortin receptor activity|protein binding			ovary(3)|lung(2)|breast(1)	6						GTGAGCATGTCCAGTGCCTGG	0.517													17	42					0	0	0.00121646	0	0
LAMA3	3909	broad.mit.edu	37	18	21413905	21413906	+	Missense_Mutation	DNP	CG	AT	AT	rs148470606	by1000genomes	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:21413905_21413906CG>AT	uc002kuq.2	+	24	3023_3024	c.2937_2938CG>AT	c.(2935-2940)TCCGGG>TCATGG	p.G980W	LAMA3_uc002kur.2_Missense_Mutation_p.G980W	NM_198129	NP_937762	Q16787	LAMA3_HUMAN	laminin alpha 3 subunit isoform 1	980	Domain IV 1 (domain IV B).				cell adhesion|epidermis development|hemidesmosome assembly|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|skin(2)|central_nervous_system(1)	11	all_cancers(21;7.81e-05)|all_epithelial(16;4.45e-07)|Lung NSC(20;0.00156)|all_lung(20;0.00508)|Colorectal(14;0.0202)|Ovarian(20;0.17)				Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TGAAGAGCTCCGGGTCTGTTCT	0.53													6	188					0	0	6.4e-05	0	0
DSC2	1824	broad.mit.edu	37	18	28648157	28648157	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:28648157C>T	uc002kwl.3	-	16	2984	c.2530G>A	c.(2530-2532)GAT>AAT	p.D844N	DSC2_uc002kwk.3_3'UTR	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	844	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TGATTTTCATCTTGATTACAC	0.358													24	43					0	0	0.00178596	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092777	30092777	+	RNA	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:30092777C>T	uc010dmc.2	+	1		c.1152C>T				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						GAACTGACTCCTCTTCAAGCC	0.438													12	27					0	0	0.000978159	0	0
ASXL3	80816	broad.mit.edu	37	18	31319760	31319761	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:31319760_31319761AC>TT	uc010dmg.1	+	11	2447_2448	c.2392_2393AC>TT	c.(2392-2394)ACC>TTC	p.T798F	ASXL3_uc002kxq.2_Missense_Mutation_p.T505F	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	798					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGAGAACCTTACCTCCCAGCAG	0.475													12	22					0	0	6.4e-05	0	0
DTNA	1837	broad.mit.edu	37	18	32391985	32391985	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:32391985C>T	uc010dmn.1	+	5	512	c.511C>T	c.(511-513)CTT>TTT	p.L171F	DTNA_uc002kxu.2_Missense_Mutation_p.L171F|DTNA_uc010xbx.1_Missense_Mutation_p.L171F|DTNA_uc002kxv.3_Missense_Mutation_p.L171F|DTNA_uc002kxw.2_Missense_Mutation_p.L171F|DTNA_uc002kxx.2_Missense_Mutation_p.L171F|DTNA_uc010dmj.2_Missense_Mutation_p.L171F|DTNA_uc002kxz.2_Missense_Mutation_p.L171F|DTNA_uc002kxy.2_Missense_Mutation_p.L171F|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Missense_Mutation_p.L171F|DTNA_uc002kyb.3_Missense_Mutation_p.L171F|DTNA_uc010dmm.2_Missense_Mutation_p.L171F	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	171	Interaction with MAGEE1 (By similarity).				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						TGACCAATTCCTTCGGGAAGT	0.418													20	39					0	0	0.000295444	0	0
ZNF397	84307	broad.mit.edu	37	18	32825358	32825358	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:32825358C>T	uc010dmp.2	+	4	845	c.689C>T	c.(688-690)ACA>ATA	p.T230I	ZNF397_uc010dmq.2_Intron|ZNF397_uc010dmr.2_Intron|ZNF397_uc002kyj.2_Intron	NM_001135178	NP_001128650	Q8NF99	ZN397_HUMAN	zinc finger protein 397 isoform 1	230					viral reproduction	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGAAGTGCTACAGGGGAGAAA	0.438													7	6					0	0	8.12818e-05	0	0
PIK3C3	5289	broad.mit.edu	37	18	39613899	39613899	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:39613899C>T	uc002lap.2	+	16	1875	c.1817C>T	c.(1816-1818)CCG>CTG	p.P606L	PIK3C3_uc010xcl.1_Missense_Mutation_p.P543L|PIK3C3_uc002laq.2_Missense_Mutation_p.P91L	NM_002647	NP_002638	Q8NEB9	PK3C3_HUMAN	catalytic phosphatidylinositol 3-kinase 3	606					cell cycle|cytokinesis|fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	midbody|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|protein binding			lung(8)|ovary(1)|breast(1)	10						GGAATAATTCCGGAAACAGCT	0.358										TSP Lung(28;0.18)			15	45					0	0	0.000566183	0	0
MYO5B	4645	broad.mit.edu	37	18	47479662	47479662	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:47479662C>T	uc002leb.2	-	14	2008	c.1720G>A	c.(1720-1722)GAA>AAA	p.E574K	MYO5B_uc002lec.1_Missense_Mutation_p.E573K	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	574	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		ATCTGCTCTTCATACACCGTG	0.532													20	51					0	0	0.00047179	0	0
CCDC11	220136	broad.mit.edu	37	18	47753912	47753912	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:47753912G>T	uc002lee.2	-	8	1475	c.1384C>A	c.(1384-1386)CAA>AAA	p.Q462K		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	462	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TCTGCTTCTTGGGACTGCTGC	0.468													9	256					0.000151284	0.00130906	0.00185496	1	0
MEX3C	51320	broad.mit.edu	37	18	48703658	48703659	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:48703658_48703659GT>AA	uc002lfc.3	-	2	1042_1043	c.1042_1043AC>TT	c.(1042-1044)ACT>TTT	p.T348F		NM_016626	NP_057710	Q5U5Q3	MEX3C_HUMAN	ring finger and KH domain containing 2	348	KH 2.					cytoplasm|nucleus	RNA binding|zinc ion binding			lung(2)|ovary(1)|skin(1)	4		Colorectal(6;0.003)|all_epithelial(6;0.0473)		Colorectal(16;0.0175)|READ - Rectum adenocarcinoma(32;0.15)		TCTTTTAATAGTTGCTCCTTTG	0.475													28	39					0	0	6.4e-05	0	0
FECH	2235	broad.mit.edu	37	18	55218048	55218048	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:55218048G>A	uc002lgq.3	-	11	1285	c.1168C>T	c.(1168-1170)CAG>TAG	p.Q390*	FECH_uc002lgp.3_Nonsense_Mutation_p.Q396*|FECH_uc002lgr.3_Nonsense_Mutation_p.Q248*	NM_000140	NP_000131	P22830	HEMH_HUMAN	ferrochelatase isoform b precursor	390					generation of precursor metabolites and energy|heme biosynthetic process|protoporphyrinogen IX metabolic process|response to light stimulus	mitochondrial inner membrane|mitochondrial matrix	2 iron, 2 sulfur cluster binding|ferrochelatase activity|ferrous iron binding|protein binding			central_nervous_system(1)	1		Colorectal(73;0.227)				TCGTTTGACTGGATGTGTGAA	0.562													12	34					0	0	0.000219431	0	0
CCDC102B	79839	broad.mit.edu	37	18	66504023	66504023	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:66504023G>A	uc002lkk.2	+	4	246	c.23G>A	c.(22-24)CGA>CAA	p.R8Q	CCDC102B_uc002lki.2_Missense_Mutation_p.R8Q|CCDC102B_uc002lkj.1_Missense_Mutation_p.R8Q	NM_001093729	NP_001087198	Q68D86	C102B_HUMAN	coiled-coil domain containing 102B	8										ovary(1)|lung(1)|skin(1)	3		Esophageal squamous(42;0.0559)|Colorectal(73;0.0604)				TCCATACATCGATTAATTGAG	0.398													22	30					0	0	0.00152264	0	0
CBLN2	147381	broad.mit.edu	37	18	70209164	70209164	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr18:70209164C>T	uc002lku.2	-	2	467	c.232G>A	c.(232-234)GTC>ATC	p.V78I	CBLN2_uc002lkv.2_Missense_Mutation_p.V78I	NM_182511	NP_872317	Q8IUK8	CBLN2_HUMAN	cerebellin 2 precursor	78						integral to membrane					0		Esophageal squamous(42;0.131)				GAGGAGGTGACGGCGCCGTCC	0.711													5	16					0	0	0.000602214	0	0
ZNF556	80032	broad.mit.edu	37	19	2878181	2878181	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:2878181G>A	uc002lwp.1	+	4	1312	c.1225G>A	c.(1225-1227)GGG>AGG	p.G409R	ZNF556_uc002lwq.2_Missense_Mutation_p.G408R	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	409					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ACCTTCAGGCGGGCTTTGCTC	0.458													39	44					0	0	0.000437636	0	0
ZNRF4	148066	broad.mit.edu	37	19	5456123	5456123	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:5456123C>T	uc002mca.3	+	1	698	c.621C>T	c.(619-621)ATC>ATT	p.I207I		NM_181710	NP_859061	Q8WWF5	ZNRF4_HUMAN	zinc and ring finger 4 precursor	207	Extracellular (Potential).|PA.					integral to membrane	zinc ion binding			large_intestine(2)	2				UCEC - Uterine corpus endometrioid carcinoma (162;0.0002)		GGGGCCAGATCGCCATCCCCT	0.682													34	28					0	0	0.000953801	0	0
MYO1F	4542	broad.mit.edu	37	19	8618261	8618261	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:8618261C>T	uc002mkg.2	-	5	501	c.387G>A	c.(385-387)AAG>AAA	p.K129K	MYO1F_uc002mkh.2_Silent_p.K129K|MYO1F_uc010xkf.1_Silent_p.K129K	NM_012335	NP_036467	O00160	MYO1F_HUMAN	myosin IF	129	Myosin head-like.					unconventional myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(1)	3						CGCCAGACACCTTGGAGATGT	0.547													19	48					0	0	0.000295444	0	0
MUC16	94025	broad.mit.edu	37	19	9083532	9083532	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:9083532G>A	uc002mkp.2	-	1	8487	c.8283C>T	c.(8281-8283)TTC>TTT	p.F2761F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2761	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AACTCTGACTGAATACAAGGG	0.498													10	54					0	0	0.000673444	0	0
ZNF560	147741	broad.mit.edu	37	19	9585962	9585962	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:9585962G>A	uc002mlp.1	-	3	238	c.28C>T	c.(28-30)CAG>TAG	p.Q10*	ZNF560_uc010dwr.1_5'UTR	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	10					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CTGCATACCTGATAACAATTT	0.408													10	16					0	0	0.00136819	0	0
FBXW9	84261	broad.mit.edu	37	19	12807335	12807335	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:12807335C>T	uc010dyx.2	-	1	61	c.61G>A	c.(61-63)GAG>AAG	p.E21K	FBXW9_uc010xmp.1_RNA|FBXW9_uc002mum.1_Missense_Mutation_p.E21K|FBXW9_uc002mun.1_5'UTR	NM_032301	NP_115677	Q5XUX1	FBXW9_HUMAN	F-box and WD-40 domain protein 9	21							protein binding			ovary(1)	1						GTCTCTGACTCTGGGTCCGAG	0.672													11	21					0	0	0.000673444	0	0
ASNA1	439	broad.mit.edu	37	19	12858889	12858889	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:12858889G>A	uc002muv.2	+	7	1032	c.1018G>A	c.(1018-1020)GAG>AAG	p.E340K	ASNA1_uc002muw.2_Missense_Mutation_p.E339K	NM_004317	NP_004308	O43681	ASNA_HUMAN	arsA arsenite transporter, ATP-binding, homolog	340					response to arsenic-containing substance	endoplasmic reticulum|nucleolus|soluble fraction	arsenite-transporting ATPase activity|ATP binding|metal ion binding			ovary(2)	2					Adenosine triphosphate(DB00171)	CCTCCTCCTGGAGCCCTACAA	0.637													12	16					0	0	0.00136819	0	0
RASAL3	64926	broad.mit.edu	37	19	15562704	15562704	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:15562704C>T	uc002nbe.2	-	18	3024	c.2938G>A	c.(2938-2940)GAT>AAT	p.D980N	WIZ_uc002nbb.3_5'Flank|RASAL3_uc002nbd.2_3'UTR|RASAL3_uc010eaa.1_Missense_Mutation_p.D394N	NM_022904	NP_075055	Q86YV0	RASL3_HUMAN	RAS protein activator like 3	980	Potential.				negative regulation of Ras protein signal transduction|signal transduction	cytoplasm|intrinsic to internal side of plasma membrane	Ras GTPase activator activity				0						TGGACAGCATCCCTCAGCTGA	0.607													8	19					0	0	0.000157383	0	0
CYP4F3	4051	broad.mit.edu	37	19	15769601	15769601	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:15769601C>T	uc002nbj.2	+	12	1429	c.1379C>T	c.(1378-1380)CCC>CTC	p.P460L	CYP4F3_uc010xok.1_Missense_Mutation_p.P460L|CYP4F3_uc010xol.1_Missense_Mutation_p.P460L|CYP4F3_uc010xom.1_Missense_Mutation_p.P311L|CYP4F3_uc002nbk.2_Missense_Mutation_p.P460L|CYP4F3_uc010xon.1_Missense_Mutation_p.P170L	NM_000896	NP_000887	Q08477	CP4F3_HUMAN	cytochrome P450, family 4, subfamily F,	460					leukotriene metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding			ovary(3)	3						GCTTTTATTCCCTTCTCAGCA	0.582													9	65					0	0	0.000978159	0	0
Unknown	0	broad.mit.edu	37	19	15880510	15880510	+	RNA	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:15880510C>T	uc002nbo.2	-	8		c.1184G>A								Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		AGACCACTGGCTGTGGTGTCA	0.622													7	15					0	0	8.12818e-05	0	0
CPAMD8	27151	broad.mit.edu	37	19	17013547	17013547	+	Silent	SNP	G	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:17013547G>T	uc002nfb.2	-	35	4770	c.4738C>A	c.(4738-4740)CGA>AGA	p.R1580R	CPAMD8_uc002nfd.1_Silent_p.R45R	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1533						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CAGTCTCCTCGGGAACCCTCA	0.657													4	44					0.000602214	0.00516474	0.000602214	1	0
ZNF493	284443	broad.mit.edu	37	19	21606712	21606712	+	Silent	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:21606712T>C	uc002npx.2	+	2	1147	c.867T>C	c.(865-867)TCT>TCC	p.S289S	ZNF493_uc002npw.2_Silent_p.S417S|ZNF493_uc002npy.2_Silent_p.S289S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	289	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATAAGGAGTCTTCACACCTTA	0.348													3	43					0	0	6.4e-05	0	0
SCGBL	284402	broad.mit.edu	37	19	35085114	35085114	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:35085114G>A	uc002nvn.2	-	2	234	c.212C>T	c.(211-213)TCC>TTC	p.S71F		NM_001025591	NP_001020762	Q4G0G5	SCGBL_HUMAN	secretoglobin-like precursor	71						extracellular region	binding				0						TTCTGTCACGGAGACATTGGC	0.547													24	40					0	0	0.00127121	0	0
ZNF181	339318	broad.mit.edu	37	19	35231583	35231584	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:35231583_35231584CC>AA	uc002nvu.3	+	4	760_761	c.297_298CC>AA	c.(295-300)CCCCAA>CCAAAA	p.Q100K	ZNF181_uc010xsa.1_Missense_Mutation_p.Q99K|ZNF181_uc010xsb.1_Missense_Mutation_p.Q99K|ZNF181_uc010xsc.1_Missense_Mutation_p.Q35K	NM_001029997	NP_001025168	Q2M3W8	ZN181_HUMAN	zinc finger protein 181 isoform 1	100					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			AAGATTCACCCCAAACAGTAAT	0.302													8	125					0	0	6.4e-05	0	0
ZNF792	126375	broad.mit.edu	37	19	35449270	35449270	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:35449270G>A	uc002nxh.1	-	4	1876	c.1489C>T	c.(1489-1491)CGG>TGG	p.R497W		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	497	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TGAAGTCTCCGATGGCTATTG	0.493													17	31					0	0	0.000958276	0	0
LSR	51599	broad.mit.edu	37	19	35741251	35741251	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:35741251A>G	uc002nyl.2	+	2	510	c.287A>G	c.(286-288)AAC>AGC	p.N96S	LSR_uc002nym.2_Missense_Mutation_p.N96S|LSR_uc002nyn.2_Missense_Mutation_p.N96S|LSR_uc002nyo.2_Missense_Mutation_p.N96S|LSR_uc010xsr.1_Missense_Mutation_p.N96S|LSR_uc002nyp.2_Missense_Mutation_p.N59S	NM_205834	NP_991403	Q86X29	LSR_HUMAN	lipolysis stimulated lipoprotein receptor	96	Extracellular (Potential).|Ig-like V-type.				embryo development|liver development	chylomicron|integral to membrane|low-density lipoprotein particle|plasma membrane|very-low-density lipoprotein particle	receptor activity				0	all_lung(56;3.91e-09)|Lung NSC(56;5.64e-09)|Esophageal squamous(110;0.162)		Epithelial(14;1.33e-19)|OV - Ovarian serous cystadenocarcinoma(14;1.29e-18)|all cancers(14;7.11e-17)|LUSC - Lung squamous cell carcinoma(66;0.0417)			ACCGTGTCCAACCCCTACCAC	0.597													30	145					0	0	0.00195071	0	0
ATP4A	495	broad.mit.edu	37	19	36045841	36045841	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:36045841C>T	uc002oal.1	-	16	2493	c.2464G>A	c.(2464-2466)GAA>AAA	p.E822K	ATP4A_uc010eee.1_5'UTR	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	822	Helical; (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GTGCAGAGTTCGATGAAGAGG	0.562													12	25					0	0	0.00185496	0	0
HAUS5	23354	broad.mit.edu	37	19	36110399	36110399	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:36110399C>T	uc002oam.1	+	14	1304	c.1253C>T	c.(1252-1254)CCG>CTG	p.P418L		NM_015302	NP_056117	O94927	HAUS5_HUMAN	HAUS augmin-like complex, subunit 5	418					cell division|centrosome organization|mitosis|spindle assembly	centrosome|HAUS complex|microtubule|spindle					0						TGCCGGAGCCCGGGGGAGGTG	0.642													4	9					0	0	0.00024832	0	0
KCNK6	9424	broad.mit.edu	37	19	38817597	38817597	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:38817597C>T	uc002oic.2	+	2	797	c.687C>T	c.(685-687)CCC>CCT	p.P229P	KCNK6_uc002oid.2_Silent_p.P95P	NM_004823	NP_004814	Q9Y257	KCNK6_HUMAN	potassium channel, subfamily K, member 6	229						voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(1)	1	all_cancers(60;5.83e-07)		Lung(45;0.00047)|LUSC - Lung squamous cell carcinoma(53;0.000613)		Ibutilide(DB00308)|Quinidine(DB00908)	CTGGCCAGCCCTACCGGGCCC	0.627													19	47					0	0	0.000375601	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581034	40581034	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:40581034G>A	uc002omy.2	-	6	1540	c.1315C>T	c.(1315-1317)CAT>TAT	p.H439Y	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.H439Y|ZNF780A_uc010xvh.1_Missense_Mutation_p.H440Y	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	439	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TCATTGGAATGAATTTTCTGA	0.383													27	130					0	0	0.00127121	0	0
CYP2A13	1553	broad.mit.edu	37	19	41594468	41594468	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:41594468G>A	uc002opt.2	+	1	101	c.92G>A	c.(91-93)GGG>GAG	p.G31E		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	31					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	AAGAGCAGGGGGAAGCTGCCT	0.582													17	23					0	0	0.00074312	0	0
ATP1A3	478	broad.mit.edu	37	19	42482346	42482346	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:42482346G>A	uc002osg.2	-	13	1917	c.1763C>T	c.(1762-1764)GCC>GTC	p.A588V	ATP1A3_uc010xwf.1_Missense_Mutation_p.A599V|ATP1A3_uc010xwg.1_Missense_Mutation_p.A558V|ATP1A3_uc010xwh.1_Missense_Mutation_p.A601V|ATP1A3_uc002osh.2_Missense_Mutation_p.A588V	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	588	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GTCAGGGACGGCTGCCCGGGG	0.642													12	14					0	0	0.000219431	0	0
TMEM145	284339	broad.mit.edu	37	19	42818469	42818469	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:42818469C>T	uc002otk.1	+	2	218	c.166C>T	c.(166-168)CGA>TGA	p.R56*		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	56						integral to membrane					0		Prostate(69;0.00682)				GGATTACGGCCGACTGGACTT	0.567													16	66					0	0	0.000566183	0	0
PSG5	5673	broad.mit.edu	37	19	43689216	43689216	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:43689216C>T	uc002ovu.2	-	2	279	c.148G>A	c.(148-150)GAT>AAT	p.D50N	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_5'UTR|PSG5_uc002ovx.2_Missense_Mutation_p.D50N|PSG5_uc002ovv.2_Missense_Mutation_p.D50N|PSG5_uc002ovw.2_Missense_Mutation_p.D50N	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	50	Ig-like V-type.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				AGAAGAACATCCTTCCCCTCG	0.453													42	99					0	0	0.000437636	0	0
ZNF235	9310	broad.mit.edu	37	19	44792215	44792215	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:44792215G>A	uc002oza.3	-	5	1476	c.1373C>T	c.(1372-1374)CCA>CTA	p.P458L	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF235_uc002ozb.3_Missense_Mutation_p.P454L|ZNF235_uc010xwx.1_Missense_Mutation_p.P372L	NM_004234	NP_004225	Q14590	ZN235_HUMAN	zinc finger protein 93 homolog	458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)	3		Prostate(69;0.0352)|all_neural(266;0.116)				ACATTTGTATGGTTTTTCTTC	0.388													16	55					0	0	0.00074312	0	0
LRRC4B	94030	broad.mit.edu	37	19	51021119	51021119	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:51021119G>A	uc002pss.2	-	3	1988	c.1851C>T	c.(1849-1851)ATC>ATT	p.I617I		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	617	Cytoplasmic (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		CCACGTTGATGATCTCCACGG	0.706													9	16					0	0	0.000673444	0	0
SYT3	84258	broad.mit.edu	37	19	51135965	51135965	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:51135965C>T	uc002pst.2	-	2	886	c.252G>A	c.(250-252)CGG>CGA	p.R84R	SYT3_uc002psv.2_Silent_p.R84R|SYT3_uc010ycd.1_Silent_p.R84R	NM_032298	NP_115674	Q9BQG1	SYT3_HUMAN	synaptotagmin III	84	Cytoplasmic (Potential).					cell junction|endosome|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|breast(1)	3		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00462)|GBM - Glioblastoma multiforme(134;0.0188)		CTCCCTTGTCCCGCCAGGGCA	0.657													15	34					0	0	0.000422831	0	0
SHANK1	50944	broad.mit.edu	37	19	51217085	51217085	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:51217085G>A	uc002psx.1	-	5	781	c.762C>T	c.(760-762)GCC>GCT	p.A254A		NM_016148	NP_057232	Q9Y566	SHAN1_HUMAN	SH3 and multiple ankyrin repeat domains 1	254	ANK 2.				cytoskeletal anchoring at plasma membrane	cell junction|cytoplasm|dendrite|membrane fraction|postsynaptic density|postsynaptic membrane	ionotropic glutamate receptor binding			large_intestine(2)	2		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00493)|GBM - Glioblastoma multiforme(134;0.0199)		GGGCGCATGCGGCCTTATGCA	0.637													17	16					0	0	0.00074312	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52147044	52147044	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:52147044G>A	uc002pxf.3	-	5	1120	c.1000C>T	c.(1000-1002)CTT>TTT	p.L334F		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	334	Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		TGCACAGAAAGGATGAAGGAC	0.587													17	34					0	0	0.00074312	0	0
LILRA1	11024	broad.mit.edu	37	19	55107797	55107797	+	Missense_Mutation	SNP	C	T	T	rs143023552	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:55107797C>T	uc002qgh.1	+	7	1284	c.1102C>T	c.(1102-1104)CGT>TGT	p.R368C	LILRA2_uc010yfg.1_Missense_Mutation_p.R366C|LILRA1_uc010yfh.1_Missense_Mutation_p.R368C	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	368	Ig-like C2-type 4.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		TGCCCCCCTCCGTCTCAGATC	0.577													17	49					0	0	0.000958276	0	0
LILRP2	79166	broad.mit.edu	37	19	55221524	55221524	+	RNA	SNP	A	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:55221524A>C	uc002qgs.1	+	1		c.1924A>C			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GGCCAACTTCACCCTGGGCCC	0.642													12	15					0	0	0.00185496	0	0
NLRP2	55655	broad.mit.edu	37	19	55494681	55494681	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:55494681C>T	uc002qij.2	+	6	1701	c.1615C>T	c.(1615-1617)CTT>TTT	p.L539F	NLRP2_uc010yfp.1_Missense_Mutation_p.L516F|NLRP2_uc010esn.2_Missense_Mutation_p.L515F|NLRP2_uc010eso.2_Missense_Mutation_p.L536F|NLRP2_uc010esp.2_Missense_Mutation_p.L517F	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	539					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		ACAGAAGCTGCTTTCCGGAGT	0.562													21	25					0	0	0.00188189	0	0
NLRP13	126204	broad.mit.edu	37	19	56416401	56416401	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:56416401C>G	uc010ygg.1	-	8	2550	c.2525G>C	c.(2524-2526)CGA>CCA	p.R842P		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	842	LRR 3.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CAGGCACAATCGAGTTACGTG	0.522													16	26					0	0	0.000958276	0	0
NLRP8	126205	broad.mit.edu	37	19	56459306	56459306	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:56459306C>T	uc002qmh.2	+	1	109	c.38C>T	c.(37-39)CCC>CTC	p.P13L	NLRP8_uc010etg.2_Missense_Mutation_p.P13L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	13						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		ACCCCCATTCCCTTTTCATCC	0.498													41	72					0	0	0.000781405	0	0
PEG3	5178	broad.mit.edu	37	19	57327768	57327768	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:57327768T>C	uc002qnu.2	-	7	2393	c.2042A>G	c.(2041-2043)AAG>AGG	p.K681R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.K652R|PEG3_uc002qnv.2_Missense_Mutation_p.K681R|PEG3_uc002qnw.2_Missense_Mutation_p.K557R|PEG3_uc002qnx.2_Missense_Mutation_p.K555R|PEG3_uc010etr.2_Missense_Mutation_p.K681R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	681					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GAGCTTCTCCTTATTGTAAGT	0.428													21	71					0	0	0.000375601	0	0
APOB	338	broad.mit.edu	37	2	21227542	21227543	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:21227542_21227543CC>AA	uc002red.2	-	27	11921_11922	c.11793_11794GG>TT	c.(11791-11796)TTGGGA>TTTTGA	p.3931_3932LG>F*		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3931_3932					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGTGTGTTCCCAAAACTGTAT	0.361													11	363					0	0	6.4e-05	0	0
APOB	338	broad.mit.edu	37	2	21230295	21230295	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:21230295C>T	uc002red.2	-	26	9573	c.9445G>A	c.(9445-9447)GAT>AAT	p.D3149N		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3149					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	AGAGAGAAATCTTTCAGTGGA	0.333													217	320					0	0	0.000781405	0	0
SRD5A2	6716	broad.mit.edu	37	2	31754493	31754493	+	Silent	SNP	G	A	A	rs61748126		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:31754493G>A	uc002rnw.1	-	5	653	c.582C>T	c.(580-582)TTC>TTT	p.F194F		NM_000348	NP_000339	P31213	S5A2_HUMAN	3-oxo-5 alpha-steroid 4-dehydrogenase 2	194					androgen biosynthetic process|cell differentiation|cell-cell signaling|male gonad development	endoplasmic reticulum membrane|integral to membrane|microsome	3-oxo-5-alpha-steroid 4-dehydrogenase activity|sterol 5-alpha reductase activity				0	Acute lymphoblastic leukemia(172;0.155)				Azelaic Acid(DB00548)|Dutasteride(DB01126)	TCTCACCGAGGAAATTGGCTC	0.468													7	22					0	0	0.000274275	0	0
LTBP1	4052	broad.mit.edu	37	2	33589287	33589287	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:33589287G>A	uc002ros.2	+	30	4407	c.4407G>A	c.(4405-4407)ATG>ATA	p.M1469I	LTBP1_uc002rot.2_Missense_Mutation_p.M1143I|LTBP1_uc002rou.2_Missense_Mutation_p.M1142I|LTBP1_uc002rov.2_Missense_Mutation_p.M1089I|LTBP1_uc010ymz.1_Missense_Mutation_p.M1100I|LTBP1_uc010yna.1_Missense_Mutation_p.M1047I|LTBP1_uc010ynb.1_Missense_Mutation_p.M366I	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1468	EGF-like 16; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CTTAAGATATGGATGAATGTC	0.398													28	38					0	0	0.000692331	0	0
DHX57	90957	broad.mit.edu	37	2	39050179	39050179	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:39050179G>A	uc002rrf.2	-	17	3346	c.3247C>T	c.(3247-3249)CCT>TCT	p.P1083S	DHX57_uc002rrd.3_Missense_Mutation_p.P467S|DHX57_uc002rre.2_Missense_Mutation_p.P516S	NM_198963	NP_945314	Q6P158	DHX57_HUMAN	DEAH (Asp-Glu-Ala-Asp/His) box polypeptide 57	1083							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding|zinc ion binding			ovary(1)|lung(1)|skin(1)	3		all_hematologic(82;0.248)				GTGAGAGCAGGATCCAAACAG	0.443													11	14					0	0	0.000673444	0	0
EFEMP1	2202	broad.mit.edu	37	2	56108806	56108806	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:56108806C>T	uc002rzh.2	-	5	911	c.581G>A	c.(580-582)CGG>CAG	p.R194Q	EFEMP1_uc002rzi.2_Missense_Mutation_p.R194Q|EFEMP1_uc002rzj.2_Missense_Mutation_p.R194Q|EFEMP1_uc010ypc.1_Missense_Mutation_p.R136Q	NM_004105	NP_004096	Q12805	FBLN3_HUMAN	EGF-containing fibulin-like extracellular matrix	194	EGF-like 2; calcium-binding (Potential).				negative regulation of chondrocyte differentiation|peptidyl-tyrosine phosphorylation|regulation of transcription, DNA-dependent|visual perception	extracellular space|proteinaceous extracellular matrix	calcium ion binding|epidermal growth factor receptor activity|epidermal growth factor receptor binding|growth factor activity			ovary(4)|pancreas(1)|skin(1)	6			LUSC - Lung squamous cell carcinoma(58;0.127)|Lung(47;0.132)			AAAGGATCCCCGTAAATTGAT	0.507													23	50					0	0	0.00188189	0	0
ATP6V1B1	525	broad.mit.edu	37	2	71187172	71187172	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:71187172C>T	uc002shj.2	+	6	636	c.549C>T	c.(547-549)ATC>ATT	p.I183I	ATP6V1B1_uc002shi.1_Silent_p.I183I|ATP6V1B1_uc010fdv.2_Silent_p.I183I|ATP6V1B1_uc010fdw.2_RNA|ATP6V1B1_uc010fdx.2_Silent_p.I141I	NM_001692	NP_001683	P15313	VATB1_HUMAN	ATPase, H+ transporting, lysosomal 56/58kDa, V1	183					ATP hydrolysis coupled proton transport|calcium ion homeostasis|cellular iron ion homeostasis|excretion|inner ear morphogenesis|insulin receptor signaling pathway|ossification|pH reduction|sensory perception of sound|transferrin transport	apical plasma membrane|basolateral plasma membrane|cytosol|endomembrane system|lateral plasma membrane|microvillus|proton-transporting V-type ATPase, V1 domain|vacuolar proton-transporting V-type ATPase complex	ATP binding|hydrogen ion transporting ATP synthase activity, rotational mechanism|proton-transporting ATPase activity, rotational mechanism			skin(1)	1						GCCAGAAGATCCCCATCTTCT	0.627													7	30					0	0	8.12818e-05	0	0
SLC4A5	57835	broad.mit.edu	37	2	74489270	74489270	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:74489270G>A	uc002sko.1	-	6	807	c.805C>T	c.(805-807)CGT>TGT	p.R269C	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.R269C|SLC4A5_uc010ffc.1_Missense_Mutation_p.R269C|SLC4A5_uc002skp.1_Missense_Mutation_p.R205C|SLC4A5_uc002sks.1_Missense_Mutation_p.R269C	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	269	Cytoplasmic (Potential).					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TCACACAGACGTCCGTAATTT	0.602													5	14					0	0	0.000602214	0	0
REG1A	5967	broad.mit.edu	37	2	79349161	79349161	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:79349161C>T	uc002snz.2	+	4	334	c.231C>T	c.(229-231)ACC>ACT	p.T77T	REG1A_uc010ffx.1_3'UTR|REG1A_uc010ysd.1_Silent_p.T77T	NM_002909	NP_002900	P05451	REG1A_HUMAN	regenerating islet-derived 1 alpha precursor	77	C-type lectin.				positive regulation of cell proliferation	extracellular region	growth factor activity|sugar binding				0						CTGTGCTCACCCAGGCCGAGG	0.517													34	34					0	0	0.000692331	0	0
Unknown	0	broad.mit.edu	37	2	89399359	89399359	+	RNA	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:89399359C>T	uc010ytr.1	-	46		c.5086G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GGGAGGGTAACTATTATACTG	0.512													8	30					0	0	0.00136819	0	0
SNRNP200	23020	broad.mit.edu	37	2	96965144	96965144	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:96965144C>A	uc002svu.2	-	6	738	c.652G>T	c.(652-654)GGG>TGG	p.G218W		NM_014014	NP_054733	O75643	U520_HUMAN	activating signal cointegrator 1 complex subunit	218						catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(5)|skin(4)|large_intestine(1)	10						CGAACCTCCCCGTATACGTCT	0.527													5	57					0.000602214	0.00516474	0.000602214	1	0
CNGA3	1261	broad.mit.edu	37	2	99012478	99012478	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:99012478C>T	uc002syt.2	+	8	1262	c.845C>T	c.(844-846)TCC>TTC	p.S282F	CNGA3_uc002syu.2_Missense_Mutation_p.S264F|CNGA3_uc010fij.2_Missense_Mutation_p.S286F	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	282					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CTGAAGTTTTCCCGGCTCTTT	0.488													10	18					0	0	0.000442599	0	0
RANBP2	5903	broad.mit.edu	37	2	109382770	109382770	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:109382770G>A	uc002tem.3	+	20	5901	c.5775G>A	c.(5773-5775)CAG>CAA	p.Q1925Q		NM_006267	NP_006258	P49792	RBP2_HUMAN	RAN binding protein 2	1925					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA transport|protein folding|protein import into nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore	peptidyl-prolyl cis-trans isomerase activity|Ran GTPase binding|zinc ion binding		RANBP2/ALK(16)	soft_tissue(16)|lung(1)|pancreas(1)	18						TCCAGGCTCAGGATATTAGTG	0.413													116	180					0	0	0.000781405	0	0
FBLN7	129804	broad.mit.edu	37	2	112942804	112942804	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:112942804C>T	uc002tho.1	+	7	1106	c.835C>T	c.(835-837)CCG>TCG	p.P279S	FBLN7_uc002thn.2_Missense_Mutation_p.P279S|FBLN7_uc010fki.1_Missense_Mutation_p.P233S|FBLN7_uc010fkj.1_Missense_Mutation_p.P145S	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	279	EGF-like 3; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						GGGCCTGCAGCCGGTGTGCCC	0.577													21	44					0	0	0.000375601	0	0
IL1B	3553	broad.mit.edu	37	2	113590272	113590272	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:113590272G>A	uc002tii.1	-	5	520	c.433C>T	c.(433-435)CTC>TTC	p.L145F	IL1B_uc002tih.1_Missense_Mutation_p.L114F	NM_000576	NP_000567	P01584	IL1B_HUMAN	interleukin 1, beta proprotein	145					activation of MAPK activity|anti-apoptosis|apoptosis|cell-cell signaling|cellular response to drug|cellular response to mechanical stimulus|cytokine-mediated signaling pathway|embryo implantation|fever generation|negative regulation of adiponectin secretion|negative regulation of cell proliferation|negative regulation of glucose transport|negative regulation of insulin receptor signaling pathway|negative regulation of lipid catabolic process|negative regulation of MAP kinase activity|positive regulation of angiogenesis|positive regulation of calcidiol 1-monooxygenase activity|positive regulation of cell adhesion molecule production|positive regulation of cell division|positive regulation of fever generation|positive regulation of granulocyte macrophage colony-stimulating factor production|positive regulation of heterotypic cell-cell adhesion|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of interferon-gamma production|positive regulation of interleukin-2 biosynthetic process|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of lipid catabolic process|positive regulation of membrane protein ectodomain proteolysis|positive regulation of mitosis|positive regulation of monocyte chemotactic protein-1 production|positive regulation of myosin light chain kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric oxide biosynthetic process|positive regulation of prostaglandin secretion|positive regulation of protein export from nucleus|positive regulation of T cell proliferation|positive regulation vascular endothelial growth factor production|regulation of insulin secretion|sequestering of triglyceride|smooth muscle adaptation	cytosol|extracellular space	cytokine activity|growth factor activity|interleukin-1 receptor binding|protein domain specific binding			lung(3)|breast(1)	4					Anakinra(DB00026)|Minocycline(DB01017)|Procaterol(DB01366)	TGGAGGTGGAGAGCTTTCAGT	0.498													45	61					0	0	0.000781405	0	0
LCT	3938	broad.mit.edu	37	2	136570035	136570035	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:136570035C>T	uc002tuu.1	-	7	2210	c.2199G>A	c.(2197-2199)AGG>AGA	p.R733R		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	733	Extracellular (Potential).|4 X approximate repeats.|2.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		GCAACAGCCTCCTTATCCCCC	0.502													11	39					0	0	0.000978159	0	0
LRP1B	53353	broad.mit.edu	37	2	141771136	141771136	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:141771136C>T	uc002tvj.1	-	14	3341	c.2369G>A	c.(2368-2370)CGA>CAA	p.R790Q	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	790	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTGTTGCTTTCGTGGATCATA	0.333										TSP Lung(27;0.18)			15	82					0	0	0.000219431	0	0
NEB	4703	broad.mit.edu	37	2	152422239	152422239	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:152422239C>T	uc010fnx.2	-	87	13340	c.13149G>A	c.(13147-13149)ATG>ATA	p.M4383I	NEB_uc002txr.2_Missense_Mutation_p.M806I	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4383	Nebulin 120.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CCTGACTCATCATTTCCTGGT	0.498													5	7					0	0	0.00116845	0	0
NEB	4703	broad.mit.edu	37	2	152426609	152426609	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:152426609C>T	uc010fnx.2	-	81	12504	c.12313G>A	c.(12313-12315)GAA>AAA	p.E4105K	NEB_uc002txr.2_Missense_Mutation_p.E528K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4105	Nebulin 112.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CTCTGCAGTTCGTAGGCCTTC	0.512													6	17					0	0	0.00116845	0	0
CYTIP	9595	broad.mit.edu	37	2	158272256	158272256	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:158272256C>T	uc002tzj.1	-	8	1085	c.1013G>A	c.(1012-1014)CGA>CAA	p.R338Q	CYTIP_uc010zcl.1_Missense_Mutation_p.R232Q	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	338					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						GAGTTGCTTTCGGACACTTCC	0.483													26	28					0	0	0.00178596	0	0
BAZ2B	29994	broad.mit.edu	37	2	160193466	160193466	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:160193466G>A	uc002uao.2	-	33	6135	c.5783C>T	c.(5782-5784)TCA>TTA	p.S1928L	BAZ2B_uc002uap.2_Missense_Mutation_p.S1892L	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1928					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						TTTCATAATTGATTTTTCCCA	0.358													9	42					0	0	0.000274275	0	0
SCN9A	6335	broad.mit.edu	37	2	167060918	167060918	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:167060918C>T	uc010fpl.2	-	25	4763	c.4422G>A	c.(4420-4422)ATG>ATA	p.M1474I	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1485						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CCAGCTTTTTCATTGCATTAT	0.308													29	50					0	0	0.000409698	0	0
TTN	7273	broad.mit.edu	37	2	179425768	179425768	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:179425768C>T	uc010zfg.1	-	275	77611	c.77387G>A	c.(77386-77388)CGA>CAA	p.R25796Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R19491Q|TTN_uc010zfi.1_Missense_Mutation_p.R19424Q|TTN_uc010zfj.1_Missense_Mutation_p.R19299Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26723							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATAACGTCTCGGAACTTGAC	0.448													72	111					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179454318	179454318	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:179454318A>G	uc010zfg.1	-	253	54654	c.54430T>C	c.(54430-54432)TCC>CCC	p.S18144P	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S11839P|TTN_uc010zfi.1_Missense_Mutation_p.S11772P|TTN_uc010zfj.1_Missense_Mutation_p.S11647P	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19071							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAGTCATCGGAGCCCTTAAGC	0.418													44	67					0	0	0.000589545	0	0
TTN	7273	broad.mit.edu	37	2	179522852	179522852	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:179522852C>T	uc010zfk.1	-	29	2568	c.2020G>A	c.(2020-2022)GAA>AAA	p.E674K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11917							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACGGGAATTTCTTTTTCTGCG	0.413													35	45					0	0	0.000781405	0	0
TTN	7273	broad.mit.edu	37	2	179611971	179611971	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:179611971G>A	uc002unb.2	-	46	15380	c.15156C>T	c.(15154-15156)TCC>TCT	p.S5052S	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGGGGGTGTGGAGTATCTTT	0.483													8	27					0	0	0.000157383	0	0
TTN	7273	broad.mit.edu	37	2	179612389	179612389	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:179612389C>T	uc002unb.2	-	46	14962	c.14738G>A	c.(14737-14739)GGA>GAA	p.G4913E	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCACGCTTTCCAGCAGCAAG	0.418													30	55					0	0	0.00111076	0	0
COL3A1	1281	broad.mit.edu	37	2	189875503	189875503	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:189875503C>T	uc002uqj.1	+	50	4258	c.4141C>T	c.(4141-4143)CAG>TAG	p.Q1381*		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	1381	Fibrillar collagen NC1.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	ATACATGGATCAGGCCAGTGG	0.453													8	24					0	0	0.000157383	0	0
AOX1	316	broad.mit.edu	37	2	201507515	201507515	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:201507515C>T	uc002uvx.2	+	25	2939	c.2838C>T	c.(2836-2838)TCC>TCT	p.S946S	AOX1_uc010zhf.1_Silent_p.S502S|AOX1_uc010fsu.2_Silent_p.S312S	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	946					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	GTGGACTATCCCCTGAGAAGG	0.333													20	33					0	0	0.00188189	0	0
ZDBF2	57683	broad.mit.edu	37	2	207173257	207173257	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:207173257C>T	uc002vbp.2	+	5	4255	c.4005C>T	c.(4003-4005)ATC>ATT	p.I1335I		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	1335							nucleic acid binding|zinc ion binding			ovary(3)	3						TTTCAAATATCCCTCTTCAGT	0.383													26	54					0	0	0.00047179	0	0
ABCA12	26154	broad.mit.edu	37	2	215910672	215910672	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:215910672G>A	uc002vew.2	-	7	981	c.761C>T	c.(760-762)TCA>TTA	p.S254L	ABCA12_uc010zjn.1_5'UTR	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	254					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		TTGCACTTGTGAGAAGAAAGA	0.383													20	36					0	0	0.00188189	0	0
IGFBP2	3485	broad.mit.edu	37	2	217526682	217526682	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:217526682C>T	uc010zjt.1	+	5	903	c.753C>T	c.(751-753)ATC>ATT	p.I251I	IGFBP2_uc010zju.1_3'UTR	NM_000597	NP_000588	P18065	IBP2_HUMAN	insulin-like growth factor binding protein 2,	258	Thyroglobulin type-1.				positive regulation of activated T cell proliferation|regulation of cell growth|regulation of insulin-like growth factor receptor signaling pathway	extracellular space	insulin-like growth factor I binding|insulin-like growth factor II binding				0		Renal(323;0.0458)		Epithelial(149;2.9e-06)|all cancers(144;0.000223)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00968)		CCCTGCACATCCCCAACTGTG	0.632													16	26					0	0	0.000422831	0	0
C2orf62	375307	broad.mit.edu	37	2	219229428	219229429	+	Nonsense_Mutation	DNP	GG	AT	AT	rs148292950	by1000genomes	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:219229428_219229429GG>AT	uc002vhr.2	+	7	737_738	c.708_709GG>AT	c.(706-711)GCGGAG>GCATAG	p.E237*	C2orf62_uc002vhs.2_Intron	NM_198559	NP_940961	Q7Z7H3	CB062_HUMAN	hypothetical protein LOC375307	237											0		Renal(207;0.0915)		Epithelial(149;8.08e-07)|all cancers(144;0.000146)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CTGTCCACGCGGAGGAGGGCAT	0.589													12	34					0	0	6.4e-05	0	0
ATG9A	79065	broad.mit.edu	37	2	220087135	220087135	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:220087135G>A	uc002vke.1	-	12	2072	c.1886C>T	c.(1885-1887)TCC>TTC	p.S629F	ABCB6_uc010fwe.1_5'Flank|ABCB6_uc010zku.1_5'Flank|ATG9A_uc002vkd.1_RNA|ATG9A_uc002vkf.1_Missense_Mutation_p.S629F	NM_001077198	NP_001070666	Q7Z3C6	ATG9A_HUMAN	APG9 autophagy 9-like 1	629	Cytoplasmic (By similarity).				autophagic vacuole assembly|protein transport	autophagic vacuole membrane|cytoplasmic vesicle|Golgi apparatus|integral to membrane|late endosome membrane				skin(1)	1		Renal(207;0.0474)		Epithelial(149;1.37e-06)|all cancers(144;0.000222)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCCCGGCAGGATGAGCCAGC	0.617													8	56					0	0	0.000673444	0	0
HDLBP	3069	broad.mit.edu	37	2	242203964	242203964	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr2:242203964G>A	uc002waz.2	-	4	361	c.133C>T	c.(133-135)CCT>TCT	p.P45S	HDLBP_uc002wba.2_Missense_Mutation_p.P45S|HDLBP_uc002wbb.2_Missense_Mutation_p.P66S|HDLBP_uc010fzn.1_5'UTR|uc010zoo.1_5'Flank	NM_203346	NP_976221	Q00341	VIGLN_HUMAN	high density lipoprotein binding protein	45					cholesterol metabolic process|lipid transport	cytoplasm|high-density lipoprotein particle|nucleus|plasma membrane	lipid binding|protein binding|RNA binding			breast(3)|skin(1)	4		all_cancers(19;7.77e-41)|all_epithelial(40;1.74e-18)|Breast(86;1.53e-05)|Renal(207;0.00179)|all_lung(227;0.00338)|Ovarian(221;0.00556)|Lung NSC(271;0.0121)|Esophageal squamous(248;0.129)|all_hematologic(139;0.158)|Melanoma(123;0.16)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;8.13e-34)|all cancers(36;4.71e-31)|OV - Ovarian serous cystadenocarcinoma(60;2.34e-15)|Kidney(56;3.72e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.76e-08)|BRCA - Breast invasive adenocarcinoma(100;3.38e-06)|Lung(119;0.000109)|LUSC - Lung squamous cell carcinoma(224;0.000964)|Colorectal(34;0.0132)|COAD - Colon adenocarcinoma(134;0.0928)		GGAAGTGGAGGGAAGGCATCC	0.517													78	85					0	0	0.000781405	0	0
C20orf96	140680	broad.mit.edu	37	20	264671	264671	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:264671G>A	uc002wde.1	-	4	378	c.239C>T	c.(238-240)CCA>CTA	p.P80L	C20orf96_uc002wdc.2_Missense_Mutation_p.P27L|C20orf96_uc002wdd.2_Missense_Mutation_p.P45L|C20orf96_uc010zpi.1_Missense_Mutation_p.P27L|C20orf96_uc010zpj.1_Missense_Mutation_p.P45L|C20orf96_uc010zpk.1_Missense_Mutation_p.P18L	NM_153269	NP_695001	Q9NUD7	CT096_HUMAN	hypothetical protein LOC140680	80											0		all_cancers(10;0.00959)|Lung NSC(37;0.227)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			TAGTTCTCTTGGATTCTTCGG	0.537													11	30					0	0	0.000978159	0	0
PDYN	5173	broad.mit.edu	37	20	1961292	1961292	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:1961292C>T	uc010gaj.2	-	3	684	c.442G>A	c.(442-444)GAT>AAT	p.D148N	uc002wfu.1_Intron|PDYN_uc002wfv.2_Missense_Mutation_p.D148N|PDYN_uc010zpt.1_5'UTR	NM_024411	NP_077722	P01213	PDYN_HUMAN	beta-neoendorphin-dynorphin preproprotein	148					cell death|neuropeptide signaling pathway|synaptic transmission	extracellular region|plasma membrane	opioid peptide activity			upper_aerodigestive_tract(1)|ovary(1)	2						AGCTGGGCATCCCTCATCAGC	0.557													11	32					0	0	0.000673444	0	0
SLC24A3	57419	broad.mit.edu	37	20	19677497	19677497	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:19677497C>T	uc002wrl.2	+	14	1745	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	516	Helical; (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						GGATCACCTTCCTGGCTGCTG	0.512													10	33					0	0	0.000978159	0	0
DEFB118	117285	broad.mit.edu	37	20	29960927	29960927	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:29960927G>A	uc002wvr.2	+	2	352	c.326G>A	c.(325-327)GGA>GAA	p.G109E		NM_054112	NP_473453	Q96PH6	DB118_HUMAN	beta-defensin 118 precursor	109					cell-matrix adhesion|defense response to bacterium|innate immune response|spermatogenesis	extracellular region				ovary(3)|pancreas(1)	4	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TCTGAGGCGGGAAGGGGAACT	0.433													10	24					0	0	0.000673444	0	0
C20orf70	140683	broad.mit.edu	37	20	31761933	31761933	+	Silent	SNP	C	T	T	rs149183452		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:31761933C>T	uc002wyo.1	+	4	422	c.351C>T	c.(349-351)ATC>ATT	p.I117I		NM_080574	NP_542141	Q96DR5	SPLC2_HUMAN	chromosome 20 open reading frame 70 precursor	117						extracellular region	lipid binding			ovary(1)|central_nervous_system(1)	2						CTGAACCGATCGATGATGGCA	0.483													9	33					0	0	0.000673444	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31975170	31975170	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:31975170G>A	uc010gek.2	-	6	838	c.714C>T	c.(712-714)GTC>GTT	p.V238V	CDK5RAP1_uc002wyy.2_Silent_p.V148V|CDK5RAP1_uc002wyz.2_Silent_p.V238V|CDK5RAP1_uc002wza.2_Silent_p.V238V|CDK5RAP1_uc010gel.2_Silent_p.V147V|CDK5RAP1_uc010gem.2_Silent_p.V238V|CDK5RAP1_uc002wzc.1_Silent_p.V238V|CDK5RAP1_uc010gen.2_Silent_p.V238V	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	238					brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						GGACTGGCATGACATCAGCAT	0.552													11	31					0	0	0.00136819	0	0
MMP24	10893	broad.mit.edu	37	20	33842281	33842281	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:33842281G>A	uc002xbu.2	+	4	544	c.541G>A	c.(541-543)GAG>AAG	p.E181K	EDEM2_uc010zuv.1_Intron	NM_006690	NP_006681	Q9Y5R2	MMP24_HUMAN	matrix metalloproteinase 24 preproprotein	181	Extracellular (Potential).				proteolysis	integral to plasma membrane|proteinaceous extracellular matrix	calcium ion binding|enzyme activator activity|metalloendopeptidase activity|zinc ion binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00252)			AAAAGTGGGTGAGCTAGACAC	0.488													26	64					0	0	0.00106085	0	0
FAM83C	128876	broad.mit.edu	37	20	33875213	33875213	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:33875213G>A	uc010zux.1	-	4	1487	c.1369C>T	c.(1369-1371)CGG>TGG	p.R457W	EIF6_uc002xbv.1_5'Flank|EIF6_uc002xbx.1_5'Flank|EIF6_uc002xbz.1_5'Flank|EIF6_uc002xby.1_5'Flank|FAM83C_uc002xcb.1_Missense_Mutation_p.R112W	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	457										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GGGGCACCCCGATGGAACTGG	0.647													5	11					0	0	0.00116845	0	0
CHD6	84181	broad.mit.edu	37	20	40080585	40080585	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:40080585C>T	uc002xka.1	-	22	3582	c.3404G>A	c.(3403-3405)CGT>CAT	p.R1135H		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1135					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				CAGGAGGGCACGGCAAATCAT	0.517													12	23					0	0	0.00136819	0	0
PTPRT	11122	broad.mit.edu	37	20	40790031	40790031	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:40790031C>T	uc002xkg.2	-	17	2827	c.2643G>A	c.(2641-2643)ATG>ATA	p.M881I	PTPRT_uc010ggj.2_Missense_Mutation_p.M900I|PTPRT_uc010ggi.2_Missense_Mutation_p.M84I	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	881	Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GGCCTCTCTTCATCTGCGTGA	0.562													12	30					0	0	0.00136819	0	0
MYBL2	4605	broad.mit.edu	37	20	42331389	42331389	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:42331389G>A	uc002xlb.1	+	8	1426	c.1211G>A	c.(1210-1212)GGC>GAC	p.G404D	MYBL2_uc010zwj.1_Missense_Mutation_p.G380D|MYBL2_uc002xla.1_Missense_Mutation_p.G404D	NM_002466	NP_002457	P10244	MYBB_HUMAN	MYB-related protein B	404						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(3)|kidney(2)	5		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.0031)			TCTGGCATTGGCACACCGCCC	0.622													5	14					0	0	0.000602214	0	0
DDX27	55661	broad.mit.edu	37	20	47853027	47853027	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:47853027A>G	uc002xuh.2	+	14	1821	c.1760A>G	c.(1759-1761)AAG>AGG	p.K587R		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	587	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GCCCCTGTGAAGGCCAGGATA	0.537													58	30					0	0	0.000781405	0	0
B4GALT5	9334	broad.mit.edu	37	20	48273116	48273116	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:48273116A>T	uc002xuu.3	-	2	433	c.239T>A	c.(238-240)GTA>GAA	p.V80E		NM_004776	NP_004767	O43286	B4GT5_HUMAN	UDP-Gal:betaGlcNAc beta 1,4-	80	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi cisterna membrane|integral to membrane	galactosyltransferase activity|metal ion binding			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(9;2.51e-06)			TGAGTCATTTACACTGCTGTT	0.433													19	199					0	0	0.00047179	0	0
TMEM189-UBE2V1	387522	broad.mit.edu	37	20	48760138	48760138	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:48760138A>C	uc002xvf.2	-	2	303	c.142T>G	c.(142-144)TGC>GGC	p.C48G	TMEM189_uc010zyq.1_RNA|TMEM189_uc002xvg.2_Missense_Mutation_p.C48G|TMEM189_uc010gif.2_Missense_Mutation_p.C48G	NM_199203	NP_954673	Q13404	UB2V1_HUMAN	TMEM189-UBE2V1 readthrough transcript	Error:Variant_position_missing_in_Q13404_after_alignment					cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|protein K63-linked ubiquitination|regulation of DNA repair|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleus|UBC13-UEV1A complex|ubiquitin ligase complex	acid-amino acid ligase activity|protein binding				0			BRCA - Breast invasive adenocarcinoma(9;8.29e-07)			ATCACAGAGCACCACTCCTGG	0.597													10	120					0	0	0.000673444	0	0
OSBPL2	9885	broad.mit.edu	37	20	60847181	60847181	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:60847181G>A	uc002yck.1	+	5	461	c.259G>A	c.(259-261)GAG>AAG	p.E87K	OSBPL2_uc002ycl.1_Missense_Mutation_p.E75K|OSBPL2_uc011aah.1_5'UTR	NM_144498	NP_653081	Q9H1P3	OSBL2_HUMAN	oxysterol-binding protein-like protein 2 isoform	87					lipid transport		lipid binding			ovary(1)|central_nervous_system(1)	2	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;1.33e-06)			ATCTTTCCAGGAGCTGTCCAA	0.597													7	14					0	0	8.12818e-05	0	0
CHRNA4	1137	broad.mit.edu	37	20	61987436	61987436	+	Missense_Mutation	SNP	C	T	T	rs146651027	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:61987436C>T	uc002yes.2	-	4	452	c.274G>A	c.(274-276)GAG>AAG	p.E92K	CHRNA4_uc002yet.1_Intron|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_5'UTR|CHRNA4_uc002yev.1_5'UTR|CHRNA4_uc010gkf.1_5'UTR	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	92	Extracellular (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	TCGTGCCACTCCTGGATGAGG	0.488													4	12					0	0	0.00024832	0	0
SAMD10	140700	broad.mit.edu	37	20	62608326	62608326	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:62608326G>A	uc002yhm.2	-	3	618	c.443C>T	c.(442-444)ACC>ATC	p.T148I	SAMD10_uc002yhn.2_RNA	NM_080621	NP_542188	Q9BYL1	SAM10_HUMAN	sterile alpha motif domain containing 10	148	SAM.										0	all_cancers(38;2.14e-11)|all_epithelial(29;3.41e-13)|Lung NSC(23;3.41e-09)|all_lung(23;1.06e-08)					CACTGTACCGGTGATGGCATG	0.587													6	25					0	0	8.12818e-05	0	0
SOX18	54345	broad.mit.edu	37	20	62680639	62680639	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr20:62680639G>A	uc002yhs.2	-	1	341	c.231C>T	c.(229-231)CGC>CGT	p.R77R		NM_018419	NP_060889	P35713	SOX18_HUMAN	SRY-box 18	77					angiogenesis|blood vessel endothelial cell migration|endocardial cell differentiation|endocardium formation|establishment of endothelial barrier|heart looping|lymphangiogenesis|lymphatic endothelial cell differentiation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|positive regulation of transcription from RNA polymerase II promoter|vasculogenesis	nucleus	transcription regulatory region DNA binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					CTGCCGCCTGGCGTTCCCCGC	0.468													5	10					0	0	0.000602214	0	0
TPTE	7179	broad.mit.edu	37	21	10944706	10944706	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr21:10944706G>A	uc002yip.1	-	11	896	c.528C>T	c.(526-528)TAC>TAT	p.Y176Y	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Silent_p.Y158Y|TPTE_uc002yir.1_Silent_p.Y138Y|TPTE_uc010gkv.1_Silent_p.Y38Y	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	176	Helical; (Potential).				signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CAAAAAAAATGTAAACGACAT	0.299													26	253					0	0	0.000339439	0	0
TPTE	7179	broad.mit.edu	37	21	10971323	10971323	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr21:10971323C>T	uc002yip.1	-	5	402	c.34G>A	c.(34-36)GGA>AGA	p.G12R	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.G12R|TPTE_uc002yir.1_Missense_Mutation_p.G12R|TPTE_uc010gkv.1_Intron	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	12					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		ATGATGACTCCCGCCAGGTCA	0.333													10	51					0	0	0.00185496	0	0
CHODL	140578	broad.mit.edu	37	21	19632525	19632525	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr21:19632525C>T	uc002ykv.2	+	4	947	c.556C>T	c.(556-558)CCA>TCA	p.P186S	CHODL_uc002ykr.2_Missense_Mutation_p.P145S|CHODL_uc002yks.2_Missense_Mutation_p.P145S|CHODL_uc002ykt.2_Missense_Mutation_p.P145S|CHODL_uc002yku.2_Missense_Mutation_p.P145S	NM_024944	NP_079220	Q9H9P2	CHODL_HUMAN	chondrolectin precursor	186	Extracellular (Potential).				muscle organ development	integral to membrane|perinuclear region of cytoplasm	sugar binding			upper_aerodigestive_tract(1)	1		all_epithelial(11;0.21)		Epithelial(23;0.000191)|all cancers(11;0.000827)|LUSC - Lung squamous cell carcinoma(23;0.00646)|Lung(58;0.0129)|OV - Ovarian serous cystadenocarcinoma(11;0.017)|COAD - Colon adenocarcinoma(22;0.03)|Colorectal(24;0.0917)		AGAGATTAATCCAACAGCCCC	0.284													19	72					0	0	0.00152264	0	0
CYYR1	116159	broad.mit.edu	37	21	27938585	27938585	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr21:27938585G>A	uc002ymd.2	-	2	498	c.176C>T	c.(175-177)TCG>TTG	p.S59L	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.S59L	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	59	Extracellular (Potential).					integral to membrane					0						GAATACTCACGAGAGGATATT	0.433													6	18					0	0	8.12818e-05	0	0
LCA5L	150082	broad.mit.edu	37	21	40783685	40783685	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr21:40783685C>T	uc002yxu.2	-	7	1332	c.1019G>A	c.(1018-1020)CGA>CAA	p.R340Q	LCA5L_uc002yxv.2_Missense_Mutation_p.R340Q	NM_152505	NP_689718	O95447	LCA5L_HUMAN	Leber congenital amaurosis 5-like	340											0		Prostate(19;1.2e-06)				TTTAAGTATTCGATGACTATA	0.294													8	40					0	0	0.000442599	0	0
AIRE	326	broad.mit.edu	37	21	45709924	45709924	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr21:45709924C>T	uc002zei.2	+	7	979	c.852C>T	c.(850-852)GCC>GCT	p.A284A	AIRE_uc010gpq.2_5'Flank|AIRE_uc002zej.2_5'Flank|AIRE_uc010gpr.2_5'Flank	NM_000383	NP_000374	O43918	AIRE_HUMAN	autoimmune regulator isoform 1	284					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	chromatin binding|histone binding|transcription regulatory region DNA binding|translation regulator activity|zinc ion binding			skin(1)	1				Colorectal(79;0.0806)		CCCCTCTGGCCCTCCCCAGTG	0.687									Autoimmune_PolyEndocrinopathy_Candidiasis_Ectodermal_Dystrophy				3	9					0	0	0.00024832	0	0
LSS	4047	broad.mit.edu	37	21	47627360	47627360	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr21:47627360G>A	uc002zij.2	-	15	1528	c.1449C>T	c.(1447-1449)CTC>CTT	p.L483L	LSS_uc011afv.1_Silent_p.L472L|LSS_uc002zil.2_Silent_p.L483L|LSS_uc002zik.2_Silent_p.L403L	NM_001001438	NP_001001438	P48449	ERG7_HUMAN	lanosterol synthase isoform 1	483	PFTB 2.				cholesterol biosynthetic process	endoplasmic reticulum membrane	lanosterol synthase activity				0	Breast(49;0.214)					CAGCATCGCAGAGCCGTTCTC	0.612													4	13					0	0	0.00116845	0	0
CECR1	51816	broad.mit.edu	37	22	17690364	17690364	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr22:17690364G>A	uc002zmk.1	-	1	416	c.204C>T	c.(202-204)ATC>ATT	p.I68I	CECR1_uc010gqu.1_Silent_p.I68I|CECR1_uc011agi.1_Silent_p.I26I|CECR1_uc011agj.1_Silent_p.I26I	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	68	Dimerization.				adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				TCATCTCAGCGATTTTGAGCG	0.512													19	28					0	0	0.00152264	0	0
TSSK2	23617	broad.mit.edu	37	22	19119841	19119841	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr22:19119841G>A	uc002zow.2	+	1	1521	c.929G>A	c.(928-930)CGG>CAG	p.R310Q	DGCR14_uc002zot.2_3'UTR|DGCR14_uc002zou.2_3'UTR|DGCR14_uc002zov.2_RNA	NM_053006	NP_443732	Q96PF2	TSSK2_HUMAN	testis-specific serine kinase 2	310					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)	1	Colorectal(54;0.0993)					CCCGACCACCGGCCCGACCAC	0.642													12	21					0	0	0.000978159	0	0
KREMEN1	83999	broad.mit.edu	37	22	29533586	29533586	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr22:29533586C>T	uc011akm.1	+	6	901	c.888C>T	c.(886-888)GTC>GTT	p.V296V	KREMEN1_uc003ael.2_Silent_p.V296V|KREMEN1_uc011akn.1_Silent_p.V179V	NM_032045	NP_114434	Q96MU8	KREM1_HUMAN	kringle-containing transmembrane protein 1	294	Extracellular (Potential).|CUB.				cell communication|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane|membrane fraction	protein binding			ovary(3)|lung(2)	5						CCTTCAACGTCTCTCTGGACT	0.547													15	30					0	0	0.000422831	0	0
TNRC6B	23112	broad.mit.edu	37	22	40718916	40718916	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr22:40718916C>G	uc011aor.1	+	23	5384	c.5173C>G	c.(5173-5175)CGC>GGC	p.R1725G	TNRC6B_uc003aym.2_Missense_Mutation_p.R921G|TNRC6B_uc003ayn.3_Missense_Mutation_p.R1615G	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1725					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						TGAAGTCAGCCGCTTTCTGGC	0.567													6	11					0	0	8.12818e-05	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083357	44083357	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr22:44083357C>T	uc003bdy.1	-	11	1351	c.1136G>A	c.(1135-1137)AGA>AAA	p.R379K	EFCAB6_uc003bdz.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzi.1_Missense_Mutation_p.R227K|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Missense_Mutation_p.R376K	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	379					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				ATACCTATTTCTTTTTGTCAG	0.308													14	66					0	0	0.000422831	0	0
EFCAB6	64800	broad.mit.edu	37	22	44112819	44112819	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr22:44112819G>A	uc003bdy.1	-	9	1006	c.791C>T	c.(790-792)TCC>TTC	p.S264F	EFCAB6_uc003bdz.1_Missense_Mutation_p.S112F|EFCAB6_uc010gzi.1_Missense_Mutation_p.S112F|EFCAB6_uc010gzk.1_RNA|EFCAB6_uc011aqa.1_Missense_Mutation_p.S158F|EFCAB6_uc003bea.1_Missense_Mutation_p.S261F|EFCAB6_uc003beb.3_Missense_Mutation_p.S158F	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	264					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TTCCTTTTTGGAATTTTTGGC	0.353													15	42					0	0	0.000422831	0	0
PARVG	64098	broad.mit.edu	37	22	44579252	44579252	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr22:44579252G>A	uc011aqe.1	+	3	467	c.43G>A	c.(43-45)GGG>AGG	p.G15R	PARVG_uc010gzo.2_Missense_Mutation_p.G82R|PARVG_uc010gzp.2_RNA|PARVG_uc003bep.2_Missense_Mutation_p.G15R|PARVG_uc010gzq.1_RNA|PARVG_uc010gzr.1_RNA|PARVG_uc011aqf.1_Missense_Mutation_p.G15R|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	15					cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				GCTCCCCAAGGGGGTGGAGCC	0.647													12	17					0	0	0.000219431	0	0
CHL1	10752	broad.mit.edu	37	3	432728	432728	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:432728G>A	uc003bou.2	+	21	2900	c.2629G>A	c.(2629-2631)GGA>AGA	p.G877R	CHL1_uc003bot.2_Missense_Mutation_p.G893R|CHL1_uc003bow.1_Missense_Mutation_p.G877R|CHL1_uc011asi.1_Missense_Mutation_p.G893R	NM_006614	NP_006605	O00533	CHL1_HUMAN	cell adhesion molecule with homology to L1CAM	877	Fibronectin type-III 3.|Extracellular (Potential).				axon guidance|cell adhesion|signal transduction	integral to membrane|plasma membrane|proteinaceous extracellular matrix				skin(5)|central_nervous_system(4)|large_intestine(2)|ovary(1)	12		all_cancers(2;1.14e-06)|all_epithelial(2;0.00367)|all_lung(1;0.061)|Lung NSC(2;0.201)		Epithelial(13;5.36e-06)|all cancers(10;1.4e-05)|OV - Ovarian serous cystadenocarcinoma(96;0.00323)|COAD - Colon adenocarcinoma(1;0.00925)|Colorectal(20;0.0198)		AAGAAACTCTGGAATGGTTCC	0.363													15	25					0	0	0.000308642	0	0
GADL1	339896	broad.mit.edu	37	3	30875357	30875357	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:30875357C>T	uc003cep.2	-	11	1085	c.1038G>A	c.(1036-1038)GTG>GTA	p.V346V	GADL1_uc003ceq.1_Silent_p.V346V	NM_207359	NP_997242	Q6ZQY3	GADL1_HUMAN	glutamate decarboxylase-like 1	346					carboxylic acid metabolic process		carboxy-lyase activity|pyridoxal phosphate binding				0					Pyridoxal Phosphate(DB00114)	ATTTGTCTTTCACAAGGAGAG	0.493													23	50					0	0	0.000295444	0	0
XIRP1	165904	broad.mit.edu	37	3	39229856	39229856	+	Missense_Mutation	SNP	C	T	T	rs145094629	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:39229856C>T	uc003cjk.1	-	2	1302	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	XIRP1_uc003cji.2_Missense_Mutation_p.E361K|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	361							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		CCAGCCTCTTCGTCCCCCTTC	0.587													39	59					0	0	0.000437636	0	0
MAP4	4134	broad.mit.edu	37	3	47957775	47957775	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:47957775C>T	uc003csb.2	-	7	2068	c.1542G>A	c.(1540-1542)ATG>ATA	p.M514I	MAP4_uc003csc.3_Missense_Mutation_p.M514I|MAP4_uc011bbf.1_Missense_Mutation_p.M491I|MAP4_uc003csf.3_Missense_Mutation_p.M531I	NM_002375	NP_002366	P27816	MAP4_HUMAN	microtubule-associated protein 4 isoform 1	514	17 X 14 AA tandem repeats.|16.				negative regulation of microtubule depolymerization	cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(2)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000721)|KIRC - Kidney renal clear cell carcinoma(197;0.00641)|Kidney(197;0.00736)		TGCCCAGAGCCATTTCTGTTT	0.502													54	77					0	0	0.000781405	0	0
BSN	8927	broad.mit.edu	37	3	49662727	49662727	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:49662727C>T	uc003cxe.3	+	2	658	c.544C>T	c.(544-546)CCC>TCC	p.P182S		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	182	C4-type (Potential).				synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CACGTCGACCCCCAGCCAGCC	0.592													8	24					0	0	0.000157383	0	0
RNF123	63891	broad.mit.edu	37	3	49758695	49758695	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:49758695G>C	uc003cxh.2	+	39	3988	c.3902G>C	c.(3901-3903)TGG>TCG	p.W1301S	RNF123_uc003cxi.2_RNA|AMIGO3_uc003cxj.2_5'Flank	NM_022064	NP_071347	Q5XPI4	RN123_HUMAN	ring finger protein 123	1301						cytoplasm	ligase activity|protein binding|zinc ion binding			kidney(3)|ovary(1)|lung(1)|breast(1)|skin(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.71e-05)|Kidney(197;0.00227)|KIRC - Kidney renal clear cell carcinoma(197;0.00255)		GTAGAGGACTGGGAGAAGGGA	0.557													4	178					0	0	8.12818e-05	0	0
TLR9	54106	broad.mit.edu	37	3	52256890	52256890	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:52256890C>T	uc003dda.1	-	2	2076	c.1442G>A	c.(1441-1443)CGG>CAG	p.R481Q	TLR9_uc003ddb.2_Missense_Mutation_p.R578Q	NM_017442	NP_059138	Q9NR96	TLR9_HUMAN	toll-like receptor 9 isoform A precursor	481	LRR 15.|Extracellular (Potential).				defense response to bacterium|fibroblast growth factor receptor signaling pathway|I-kappaB phosphorylation|inflammatory response|innate immune response|insulin receptor signaling pathway|maintenance of gastrointestinal epithelium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of toll-like receptor signaling pathway|positive regulation of chemokine production|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-18 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of JUN kinase activity|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|response to molecule of bacterial origin	apical plasma membrane|basolateral plasma membrane|early phagosome|endoplasmic reticulum membrane|endosome membrane|extracellular region|integral to membrane|lysosome	interleukin-1 receptor binding|siRNA binding|transmembrane receptor activity			large_intestine(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;2.41e-05)|Kidney(197;0.000537)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)	Chloroquine(DB00608)	CAGGTTGTTCCGTGACAGATC	0.617													31	33					0	0	0.000339439	0	0
OR5H1	26341	broad.mit.edu	37	3	97852270	97852270	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:97852270C>T	uc011bgt.1	+	1	729	c.729C>T	c.(727-729)GCC>GCT	p.A243A		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						CCTGTGGAGCCCATCTCTTCT	0.413													31	57					0	0	0.00178596	0	0
ZPLD1	131368	broad.mit.edu	37	3	102171836	102171836	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:102171836C>T	uc003dvs.1	+	10	1062	c.180C>T	c.(178-180)TTC>TTT	p.F60F	ZPLD1_uc003dvt.1_Silent_p.F76F|ZPLD1_uc011bhg.1_Silent_p.F60F	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	60	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						CGGTACTTTTCTCGGGTTATT	0.403													26	32					0	0	0.000878237	0	0
MYH15	22989	broad.mit.edu	37	3	108149770	108149770	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:108149770C>T	uc003dxa.1	-	27	3339	c.3282_splice	c.e27-1	p.K1094_splice		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15							myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						TAATTCTTTTCTGTTTAGAAA	0.244													21	23					0	0	0.00152264	0	0
PHLDB2	90102	broad.mit.edu	37	3	111604058	111604058	+	Silent	SNP	G	A	A	rs145708919	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:111604058G>A	uc010hqa.2	+	2	1545	c.1134G>A	c.(1132-1134)GCG>GCA	p.A378A	PHLDB2_uc003dyc.2_Silent_p.A405A|PHLDB2_uc003dyd.2_Silent_p.A378A|PHLDB2_uc003dyg.2_Silent_p.A378A|PHLDB2_uc003dyh.2_Silent_p.A378A|PHLDB2_uc003dye.3_Silent_p.A378A|PHLDB2_uc003dyf.3_Silent_p.A378A	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	378						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GAGTTTTTGCGACCAGGAGGA	0.527													22	36					0	0	0.000878237	0	0
MYLK	4638	broad.mit.edu	37	3	123419461	123419461	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:123419461C>T	uc003ego.2	-	18	3136	c.2854G>A	c.(2854-2856)GAT>AAT	p.D952N	MYLK_uc011bjw.1_Missense_Mutation_p.D952N|MYLK_uc003egp.2_Missense_Mutation_p.D883N|MYLK_uc003egq.2_Missense_Mutation_p.D952N|MYLK_uc003egr.2_Missense_Mutation_p.D883N|MYLK_uc003egs.2_Missense_Mutation_p.D776N|MYLK_uc003egt.2_Missense_Mutation_p.D143N	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	952	Actin-binding (calcium/calmodulin- sensitive) (By similarity).|1-4.|5 X 28 AA approximate tandem repeats.|Calmodulin-binding (By similarity).				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		GAGCGAAAATCGACCTGCTGG	0.597													7	33					0	0	8.12818e-05	0	0
CCDC37	348807	broad.mit.edu	37	3	126154442	126154442	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:126154442G>A	uc003eiu.1	+	16	1768	c.1669G>A	c.(1669-1671)GAG>AAG	p.E557K	CCDC37_uc010hsg.1_Missense_Mutation_p.E558K	NM_182628	NP_872434	Q494V2	CCD37_HUMAN	coiled-coil domain containing 37	557	Potential.									ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.166)		GATCCTACAGGAGGAGCATCT	0.582													11	44					0	0	0.00074312	0	0
ESYT3	83850	broad.mit.edu	37	3	138174110	138174110	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:138174110C>T	uc003esk.2	+	3	670	c.444C>T	c.(442-444)ATC>ATT	p.I148I	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	148						integral to membrane|plasma membrane					0						AGCCCAAGATCCGAGAGAAGA	0.537													75	80					0	0	0.000781405	0	0
B3GALNT1	8706	broad.mit.edu	37	3	160804147	160804147	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:160804147G>A	uc003fdv.2	-	5	815	c.396C>T	c.(394-396)TCC>TCT	p.S132S	B3GALNT1_uc003fdw.2_Silent_p.S132S|B3GALNT1_uc003fdx.2_Silent_p.S132S|B3GALNT1_uc003fdy.2_Silent_p.S132S|B3GALNT1_uc003fdz.2_Silent_p.S132S|B3GALNT1_uc003fea.2_Silent_p.S132S|B3GALNT1_uc011bpa.1_Intron	NM_033169	NP_149359	O75752	B3GL1_HUMAN	UDP-Gal:betaGlcNAc beta	132	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;4.41e-05)|Lung(72;4.61e-05)			CATCCTCTAAGGACAATGCCA	0.383													33	45					0	0	0.000491102	0	0
OTOL1	131149	broad.mit.edu	37	3	161221562	161221562	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:161221562G>A	uc011bpb.1	+	4	1266	c.1266G>A	c.(1264-1266)CAG>CAA	p.Q422Q		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	422	C1q.					collagen					0						TCTATGGTCAGGAAATAGACC	0.478													4	19					0	0	0.00024832	0	0
ZBBX	79740	broad.mit.edu	37	3	167083704	167083704	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:167083704C>T	uc003fep.2	-	6	566	c.243G>A	c.(241-243)ATG>ATA	p.M81I	ZBBX_uc011bpc.1_Missense_Mutation_p.M81I|ZBBX_uc003feq.2_Missense_Mutation_p.M52I	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	81						intracellular	zinc ion binding			ovary(2)	2						TTTGTGACATCATATATGATT	0.289													12	52					0	0	0.000219431	0	0
MCF2L2	23101	broad.mit.edu	37	3	183056698	183056698	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:183056698G>A	uc003fli.1	-	5	466	c.376C>T	c.(376-378)CCA>TCA	p.P126S	MCF2L2_uc003flj.1_Missense_Mutation_p.P126S|MCF2L2_uc003flp.1_Missense_Mutation_p.P161S	NM_015078	NP_055893	Q86YR7	MF2L2_HUMAN	Rho family guanine-nucleotide exchange factor	126	CRAL-TRIO.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			ovary(2)|large_intestine(2)|breast(1)	5	all_cancers(143;1.26e-12)|Ovarian(172;0.0355)		all cancers(12;3.35e-44)|Epithelial(37;6.48e-38)|LUSC - Lung squamous cell carcinoma(7;7.12e-25)|Lung(8;6.39e-23)|OV - Ovarian serous cystadenocarcinoma(80;6.75e-21)			AAGTTTCCTGGAAATGCCACC	0.418													10	58					0	0	0.000978159	0	0
ABCC5	10057	broad.mit.edu	37	3	183699584	183699584	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr3:183699584C>T	uc003fmg.2	-	8	1243	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K	ABCC5_uc011bqt.1_5'UTR|ABCC5_uc010hxl.2_Missense_Mutation_p.E360K	NM_005688	NP_005679	O15440	MRP5_HUMAN	ATP-binding cassette, sub-family C, member 5	360	ABC transmembrane type-1 1.					integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	all_cancers(143;1.85e-10)|Ovarian(172;0.0303)		Epithelial(37;1.74e-35)|OV - Ovarian serous cystadenocarcinoma(80;6.48e-22)			GTAAGAACTTCATTCATCTTC	0.408													31	42					0	0	0.000409698	0	0
ZNF876P	642280	broad.mit.edu	37	4	248180	248181	+	RNA	DNP	CC	TA	TA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:248180_248181CC>TA	uc010iba.2	+	2		c.1014_1015CC>TA				NR_027481				Homo sapiens cDNA clone IMAGE:4828836.												0						AATCCTCATCCCTTAATAAACA	0.366													20	53					0	0	6.4e-05	0	0
HS3ST1	9957	broad.mit.edu	37	4	11401010	11401010	+	Missense_Mutation	SNP	A	T	T	rs74785727		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:11401010A>T	uc003gmq.2	-	2	943	c.620T>A	c.(619-621)TTC>TAC	p.F207Y		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	207						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity	p.F207F(1)		skin(1)	1						GCGCAGCGGGAAAAAGCGCAG	0.597													16	22					0	0	0.000308642	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351124	40351124	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:40351124C>T	uc003gva.1	+	4	607	c.591C>T	c.(589-591)TTC>TTT	p.F197F		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	197	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	TCTCTGACTTCATTGAAGATG	0.512													39	85					0	0	0.00128727	0	0
GABRB1	2560	broad.mit.edu	37	4	47408913	47408913	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:47408913G>A	uc003gxh.2	+	8	1424	c.1050G>A	c.(1048-1050)GAG>GAA	p.E350E	GABRB1_uc011bze.1_Silent_p.E280E	NM_000812	NP_000803	P18505	GBRB1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	350	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2					Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GTGCCAATGAGAAGAATAAAC	0.393													22	37					0	0	0.000295444	0	0
GSX2	170825	broad.mit.edu	37	4	54966537	54966537	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:54966537C>A	uc010igp.1	+	1	290	c.26C>A	c.(25-27)TCG>TAG	p.S9*	PDGFRA_uc003haa.2_Intron	NM_133267	NP_573574	Q9BZM3	GSX2_HUMAN	GS homeobox 2	9						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(7;0.00671)|Lung NSC(11;0.0154)|all_neural(26;0.0209)|Glioma(25;0.08)|all_epithelial(27;0.147)		LUSC - Lung squamous cell carcinoma(32;0.00216)			TATGTCGACTCGCTCATCATC	0.647													8	10					0.000274275	0.00236905	0.000274275	1	0
TMEM165	55858	broad.mit.edu	37	4	56284107	56284107	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:56284107G>C	uc003hax.2	+	4	1014	c.747G>C	c.(745-747)TGG>TGC	p.W249C	TMEM165_uc011bzy.1_Missense_Mutation_p.W186C	NM_018475	NP_060945	Q9HC07	TM165_HUMAN	transmembrane protein 165	249	Helical; (Potential).					integral to membrane					0	Lung NSC(11;0.00545)|Glioma(25;0.08)|all_neural(26;0.101)|all_epithelial(27;0.135)		LUSC - Lung squamous cell carcinoma(4;1.62e-07)|Lung(4;1.34e-06)|Epithelial(7;0.0103)			TAGCAGAATGGGGTGATCGCT	0.353													12	46					0	0	0.00185496	0	0
PPEF2	5470	broad.mit.edu	37	4	76788533	76788533	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:76788533C>T	uc003hix.2	-	14	2046	c.1689G>A	c.(1687-1689)AGG>AGA	p.R563R	PPEF2_uc003hiy.2_RNA|PPEF2_uc003hiz.1_Silent_p.R563R	NM_006239	NP_006230	O14830	PPE2_HUMAN	serine/threonine protein phosphatase with	563					detection of stimulus involved in sensory perception|negative regulation of MAPKKK cascade|negative regulation of peptidyl-threonine phosphorylation|protein dephosphorylation|visual perception	cytoplasm|photoreceptor inner segment|photoreceptor outer segment	calcium ion binding|Hsp70 protein binding|Hsp90 protein binding|iron ion binding|manganese ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine phosphatase activity			ovary(2)|lung(1)|central_nervous_system(1)	4			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			ACAGCTTCTCCCTCAGAGCTC	0.408													16	28					0	0	0.000958276	0	0
NUP54	53371	broad.mit.edu	37	4	77065565	77065565	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:77065565G>A	uc003hjs.2	-	2	257	c.129C>T	c.(127-129)GCC>GCT	p.A43A	NUP54_uc010ije.2_5'UTR|NUP54_uc011cbs.1_5'UTR|NUP54_uc011cbt.1_Silent_p.A43A|NUP54_uc003hjt.2_5'UTR	NM_017426	NP_059122	Q7Z3B4	NUP54_HUMAN	nucleoporin 54kDa	43	Gly-rich.|Thr-rich.|9 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytoplasm|nuclear membrane|nuclear pore|nucleoplasm				ovary(1)|lung(1)	2						TGTTAGTTGGGGCAGAAAAGC	0.358													22	44					0	0	0.000295444	0	0
AGPAT9	84803	broad.mit.edu	37	4	84516026	84516026	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:84516026G>A	uc003how.2	+	8	985	c.767G>A	c.(766-768)GGA>GAA	p.G256E	AGPAT9_uc003hox.2_Missense_Mutation_p.G256E|AGPAT9_uc003hoy.2_Missense_Mutation_p.G256E	NM_032717	NP_116106	Q53EU6	GPAT3_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 9	256					phospholipid biosynthetic process|regulation of TOR signaling cascade|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	glycerol-3-phosphate O-acyltransferase activity			skin(1)	1		Hepatocellular(203;0.114)				GGCTTGATGGGAATTATTCAG	0.428													64	123					0	0	0.000781405	0	0
FAM190A	401145	broad.mit.edu	37	4	91229571	91229571	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:91229571C>T	uc003hsv.3	+	2	476	c.136C>T	c.(136-138)CCT>TCT	p.P46S	FAM190A_uc003hsu.3_Missense_Mutation_p.P46S|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.P46S	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	46	Ser-rich.									large_intestine(1)|ovary(1)	2						CAGTTCCTCTCCTTCCAGCAC	0.458													16	45					0	0	0.000958276	0	0
HPGDS	27306	broad.mit.edu	37	4	95239087	95239087	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:95239087C>T	uc003hte.1	-	3	254	c.163G>A	c.(163-165)GAA>AAA	p.E55K		NM_014485	NP_055300	O60760	HPGDS_HUMAN	prostaglandin D2 synthase, hematopoietic	55	GST N-terminal.				locomotory behavior|prostaglandin biosynthetic process|signal transduction	cytoplasm|nucleus	calcium ion binding|glutathione transferase activity|magnesium ion binding|prostaglandin-D synthase activity|protein homodimerization activity			ovary(1)	1					Glutathione(DB00143)	CCATCAACTTCCAAAATGGGG	0.323													16	50					0	0	0.00188189	0	0
TSPAN5	10098	broad.mit.edu	37	4	99399921	99399921	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:99399921A>G	uc003hub.2	-	5	841	c.491T>C	c.(490-492)CTA>CCA	p.L164P	TSPAN5_uc011cdz.1_Missense_Mutation_p.L93P	NM_005723	NP_005714	P62079	TSN5_HUMAN	transmembrane 4 superfamily member 9	164	Extracellular (Potential).					integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;1.89e-07)		GTAAATATTTAGGTTCCAATC	0.468													3	49					0	0	0.000602214	0	0
ADH1A	124	broad.mit.edu	37	4	100205881	100205881	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:100205881C>T	uc003hur.1	-	4	410	c.339G>A	c.(337-339)TTG>TTA	p.L113L	uc003hum.1_Intron|ADH1A_uc011ceg.1_Silent_p.L113L|ADH1A_uc010ilf.1_5'Flank|ADH1A_uc010ilg.1_Silent_p.L113L	NM_000667	NP_000658	P07327	ADH1A_HUMAN	class I alcohol dehydrogenase, alpha subunit	113					ethanol oxidation|transcription, DNA-dependent|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|protein binding|zinc ion binding			large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(123;9.56e-08)	Fomepizole(DB01213)|NADH(DB00157)	ACTCGTTTTTCAAGCAGTAGT	0.433													16	44					0	0	0.000566183	0	0
ADH1B	125	broad.mit.edu	37	4	100235150	100235150	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:100235150C>T	uc003hus.3	-	6	740	c.656G>A	c.(655-657)AGA>AAA	p.R219K	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.R179K|ADH1B_uc011ceh.1_Missense_Mutation_p.R64K|ADH1B_uc011cei.1_Missense_Mutation_p.R179K	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	219					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	CGCAATGATTCTGGCTGCTCC	0.517													78	172					0	0	0.000781405	0	0
MTTP	4547	broad.mit.edu	37	4	100503146	100503146	+	Missense_Mutation	SNP	G	A	A	rs145545828	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:100503146G>A	uc003hvc.3	+	3	402	c.146G>A	c.(145-147)GGA>GAA	p.G49E	MTTP_uc011cej.1_Missense_Mutation_p.G76E|MTTP_uc003hvb.2_Missense_Mutation_p.G49E	NM_000253	NP_000244	P55157	MTP_HUMAN	microsomal triglyceride transfer protein large	49	Vitellogenin.				lipid metabolic process|lipoprotein metabolic process	endoplasmic reticulum lumen	lipid binding|lipid transporter activity			ovary(3)|central_nervous_system(1)	4				OV - Ovarian serous cystadenocarcinoma(123;6.04e-09)	Hesperetin(DB01094)	CGGGGCAAAGGAAAACTGCAA	0.463													39	60					0	0	0.000953801	0	0
NPNT	255743	broad.mit.edu	37	4	106863484	106863484	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:106863484G>A	uc003hya.2	+	8	989	c.784G>A	c.(784-786)GAA>AAA	p.E262K	NPNT_uc011cfc.1_Missense_Mutation_p.E279K|NPNT_uc011cfd.1_Missense_Mutation_p.E292K|NPNT_uc011cfe.1_Missense_Mutation_p.E292K|NPNT_uc010ilt.1_Missense_Mutation_p.E262K|NPNT_uc011cff.1_Missense_Mutation_p.E262K|NPNT_uc010ilu.1_Missense_Mutation_p.E158K	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	262					cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		AGTTATGATTGAACCTTCAGG	0.363													17	33					0	0	0.000958276	0	0
NDST4	64579	broad.mit.edu	37	4	115792005	115792005	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:115792005C>T	uc003ibu.2	-	7	2317	c.1638G>A	c.(1636-1638)CTG>CTA	p.L546L	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	546	Lumenal (Potential).|Heparan sulfate N-deacetylase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		TTTGCAATTTCAGGTTGGTCC	0.443													26	52					0	0	0.00106085	0	0
FGF2	2247	broad.mit.edu	37	4	123797575	123797575	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:123797575C>T	uc003iev.1	+	2	745	c.677C>T	c.(676-678)GCT>GTT	p.A226V		NM_002006	NP_001997	P09038	FGF2_HUMAN	fibroblast growth factor 2	226					activation of MAPK activity|branching involved in ureteric bud morphogenesis|cell migration involved in sprouting angiogenesis|chemotaxis|chondroblast differentiation|embryonic morphogenesis|fibroblast growth factor receptor signaling pathway|inositol phosphate biosynthetic process|insulin receptor signaling pathway|negative regulation of blood vessel endothelial cell migration|negative regulation of cell death|organ morphogenesis|phosphatidylinositol biosynthetic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of cardiac muscle cell proliferation|positive regulation of cell division|positive regulation of cell fate specification|positive regulation of ERK1 and ERK2 cascade|positive regulation of phosphatidylinositol 3-kinase activity|positive regulation of phospholipase C activity|Ras protein signal transduction|release of sequestered calcium ion into cytosol|wound healing	extracellular space	fibroblast growth factor receptor binding|growth factor activity|heparin binding|ligand-dependent nuclear receptor transcription coactivator activity			ovary(1)|lung(1)|central_nervous_system(1)	3					Pentosan Polysulfate(DB00686)	AGATTACTGGCTTCTGTAAGC	0.333													22	36					0	0	0.000375601	0	0
LARP1B	55132	broad.mit.edu	37	4	129099679	129099679	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:129099679C>T	uc003iga.2	+	14	1909	c.1778C>T	c.(1777-1779)TCT>TTT	p.S593F	LARP1B_uc003igc.2_Missense_Mutation_p.S12F|LARP1B_uc010ioa.1_5'Flank|LARP1B_uc003ige.2_5'Flank|LARP1B_uc003igd.2_5'Flank|LARP1B_uc003igb.1_Missense_Mutation_p.S296F	NM_018078	NP_060548	Q659C4	LAR1B_HUMAN	La ribonucleoprotein domain family member 2	593							RNA binding				0						GTTCCAGAATCTCCTAGAATT	0.378													67	167					0	0	0.000781405	0	0
SLC10A7	84068	broad.mit.edu	37	4	147204355	147204355	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:147204355G>A	uc010ioz.2	-	10	1090	c.836C>T	c.(835-837)TCC>TTC	p.S279F	SLC10A7_uc003ikr.2_Missense_Mutation_p.S279F|SLC10A7_uc010ipa.2_Missense_Mutation_p.S266F|SLC10A7_uc003iks.2_RNA	NM_001029998	NP_001025169	Q0GE19	NTCP7_HUMAN	solute carrier family 10 (sodium/bile acid	279	Helical; (Potential).					integral to membrane	bile acid:sodium symporter activity				0	all_hematologic(180;0.151)					CAATGTAAGGGATTTGTGTGT	0.333													20	29					0	0	0.00047179	0	0
NR3C2	4306	broad.mit.edu	37	4	149357508	149357508	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:149357508C>T	uc003ilj.3	-	2	839	c.505G>A	c.(505-507)GGG>AGG	p.G169R	NR3C2_uc003ilk.3_Missense_Mutation_p.G169R|NR3C2_uc010iph.2_RNA	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	169	Modulating.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	ACGGAGCTCCCAGAGTCAGAC	0.478													41	70					0	0	0.000680045	0	0
RNF175	285533	broad.mit.edu	37	4	154649400	154649400	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:154649400G>A	uc003int.2	-	4	733	c.360C>T	c.(358-360)CTC>CTT	p.L120L	RNF175_uc003inu.1_Intron	NM_173662	NP_775933	Q8N4F7	RN175_HUMAN	ring finger protein 175	120	Helical; (Potential).					integral to membrane	zinc ion binding			ovary(1)|pancreas(1)	2	all_hematologic(180;0.093)	Renal(120;0.118)				TAGCTCTGAAGAGGATGTAAC	0.438													22	40					0	0	0.000375601	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156629404	156629404	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:156629404G>A	uc003iov.2	+	6	870	c.334G>A	c.(334-336)GAA>AAA	p.E112K	GUCY1A3_uc003iou.2_Missense_Mutation_p.E112K|GUCY1A3_uc010iqc.2_Missense_Mutation_p.E112K|GUCY1A3_uc003iow.2_Missense_Mutation_p.E112K|GUCY1A3_uc010iqd.2_Missense_Mutation_p.E112K|GUCY1A3_uc003iox.2_Missense_Mutation_p.E112K|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Missense_Mutation_p.E112K|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_RNA|GUCY1A3_uc003ipb.2_Missense_Mutation_p.E112K	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	112					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		TTTGGAAAGAGAAGACTTTGA	0.279													38	83					0	0	0.000680045	0	0
ODZ3	55714	broad.mit.edu	37	4	183522260	183522260	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:183522260C>T	uc003ivd.1	+	3	732	c.695C>T	c.(694-696)TCC>TTC	p.S232F		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	232	Cytoplasmic (Potential).|Teneurin N-terminal.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ACACCCGAGTCCGTCCAGCTG	0.532													33	56					0	0	0.00148497	0	0
CASP3	836	broad.mit.edu	37	4	185552963	185552963	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr4:185552963G>A	uc003iwh.2	-	6	702	c.439C>T	c.(439-441)CGT>TGT	p.R147C	CASP3_uc003iwg.2_Missense_Mutation_p.R147C|CASP3_uc003iwi.2_Missense_Mutation_p.R147C	NM_004346	NP_004337	P42574	CASP3_HUMAN	caspase 3 preproprotein	147					activation of caspase activity by cytochrome c|DNA fragmentation involved in apoptotic nuclear change|negative regulation of apoptosis|nerve growth factor receptor signaling pathway|nuclear fragmentation involved in apoptotic nuclear change|proteolysis|response to tumor necrosis factor	cytosol|mitochondrion|nucleoplasm|plasma membrane	cysteine-type endopeptidase activity|protein binding			kidney(1)	1		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00139)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_neural(102;0.057)|all_hematologic(60;0.0592)		all cancers(43;2.05e-27)|Epithelial(43;4.27e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.04e-11)|Colorectal(24;2e-05)|STAD - Stomach adenocarcinoma(60;2.35e-05)|GBM - Glioblastoma multiforme(59;4.94e-05)|COAD - Colon adenocarcinoma(29;0.00017)|BRCA - Breast invasive adenocarcinoma(30;0.000218)|LUSC - Lung squamous cell carcinoma(40;0.00904)|READ - Rectum adenocarcinoma(43;0.161)	Melatonin(DB01065)|Minocycline(DB01017)|Simvastatin(DB00641)	CTTCTACAACGATCCCCTCTG	0.363													25	70					0	0	0.000375601	0	0
SLC6A18	348932	broad.mit.edu	37	5	1239571	1239571	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:1239571A>T	uc003jby.1	+	6	862	c.739A>T	c.(739-741)ATT>TTT	p.I247F		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	247	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CCAGATGCACATTCTCCAGAA	0.562													15	53					0	0	0.00074312	0	0
OSMR	9180	broad.mit.edu	37	5	38921839	38921839	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:38921839G>A	uc003jln.1	+	12	2075	c.1708G>A	c.(1708-1710)GGT>AGT	p.G570S	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	570	Fibronectin type-III 3.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GGATGTGCTCGGTGATTTCCA	0.473													10	55					0	0	0.000673444	0	0
CARD6	84674	broad.mit.edu	37	5	40843311	40843311	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:40843311C>T	uc003jmg.2	+	2	416	c.341C>T	c.(340-342)TCA>TTA	p.S114L		NM_032587	NP_115976	Q9BX69	CARD6_HUMAN	caspase recruitment domain family, member 6	114					apoptosis|regulation of apoptosis	intracellular				ovary(2)|skin(2)|lung(1)	5						AGCAGTAATTCAGAAGATGCT	0.388													32	38					0	0	0.000491102	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41038885	41038885	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:41038885G>A	uc003jmj.3	-	21	2657	c.2167C>T	c.(2167-2169)CAA>TAA	p.Q723*	HEATR7B2_uc003jmi.3_Nonsense_Mutation_p.Q278*	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	723							binding			ovary(6)|central_nervous_system(2)	8						ATGATATCTTGATTAAGTCTG	0.483													19	17					0	0	0.00121646	0	0
C6	729	broad.mit.edu	37	5	41160404	41160404	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:41160404C>T	uc003jmk.2	-	11	1734	c.1524G>A	c.(1522-1524)AGG>AGA	p.R508R	C6_uc003jml.1_Silent_p.R508R	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	508	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GCAAAGCTTTCCTGAGGTTGT	0.522													11	59					0	0	0.000978159	0	0
SEPP1	6414	broad.mit.edu	37	5	42807042	42807042	+	RNA	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:42807042C>G	uc011cps.1	-	4		c.560G>C			SEPP1_uc011cpt.1_RNA|SEPP1_uc011cpu.1_RNA|SEPP1_uc011cpv.1_RNA|SEPP1_uc003jna.2_RNA			P49908	SEPP1_HUMAN	Homo sapiens cDNA FLJ37321 fis, clone BRAMY2018122.						response to oxidative stress	extracellular region	selenium binding				0						TTAAAAGAGTCCAGACATCTG	0.318													5	71					0	0	0.00116845	0	0
ITGA1	3672	broad.mit.edu	37	5	52216260	52216260	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:52216260C>T	uc003jou.2	+	17	2306	c.2254C>T	c.(2254-2256)CGA>TGA	p.R752*	ITGA1_uc003jov.2_RNA|ITGA1_uc003jow.2_Nonsense_Mutation_p.R283*	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	752	Extracellular (Potential).				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				CATCACAGTTCGAAAATCAGA	0.378													15	30					0	0	0.000308642	0	0
IQGAP2	10788	broad.mit.edu	37	5	75893356	75893356	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:75893356C>T	uc003kek.2	+	10	1222	c.1000C>T	c.(1000-1002)CCT>TCT	p.P334S		NM_006633	NP_006624	Q13576	IQGA2_HUMAN	IQ motif containing GTPase activating protein 2	334					small GTPase mediated signal transduction	actin cytoskeleton	actin binding|calmodulin binding|GTPase inhibitor activity|Ras GTPase activator activity			ovary(6)|central_nervous_system(1)	7		all_lung(232;0.000514)|Lung NSC(167;0.00135)|Prostate(461;0.00838)|Ovarian(174;0.0149)		all cancers(79;1.38e-36)		GGCCCAGCTGCCTGCTGTTTA	0.532													17	26					0	0	0.000422831	0	0
CMYA5	202333	broad.mit.edu	37	5	79029915	79029915	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:79029915G>A	uc003kgc.2	+	2	5399	c.5327G>A	c.(5326-5328)GGA>GAA	p.G1776E		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1776						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCACCAACTGGAAATTTGAAG	0.403													33	47					0	0	0.00148497	0	0
RASGRF2	5924	broad.mit.edu	37	5	80366339	80366339	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:80366339G>A	uc003kha.1	+	4	572	c.572G>A	c.(571-573)CGA>CAA	p.R191Q	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_Missense_Mutation_p.R19Q	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	191	Potential.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		ACCAAAGAACGAATGCGACCT	0.423													16	66					0	0	0.00074312	0	0
EDIL3	10085	broad.mit.edu	37	5	83362369	83362369	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:83362369C>T	uc003kio.1	-	7	1127	c.708G>A	c.(706-708)AGG>AGA	p.R236R	EDIL3_uc003kip.1_Silent_p.R226R|EDIL3_uc011ctt.1_Silent_p.R13R	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	236	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		GGCTTCCAATCCTCTTGGCTC	0.388													30	34					0	0	0.000409698	0	0
CHD1	1105	broad.mit.edu	37	5	98228321	98228321	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:98228321G>A	uc003knf.2	-	14	2236	c.2088C>T	c.(2086-2088)CGC>CGT	p.R696R		NM_001270	NP_001261	O14646	CHD1_HUMAN	chromodomain helicase DNA binding protein 1	696					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding|methylated histone residue binding			lung(2)|ovary(1)|breast(1)|pancreas(1)	5		all_cancers(142;5.36e-08)|all_epithelial(76;6.97e-11)|Lung NSC(167;0.000693)|Prostate(80;0.000986)|all_lung(232;0.00119)|Ovarian(225;0.024)|Colorectal(57;0.117)		COAD - Colon adenocarcinoma(37;0.0717)	Epirubicin(DB00445)	TCTTAACTCGGCGTAACAGAA	0.393													35	65					0	0	0.00058488	0	0
SLCO4C1	353189	broad.mit.edu	37	5	101597671	101597671	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:101597671C>T	uc003knm.2	-	5	1253	c.966G>A	c.(964-966)TGG>TGA	p.W322*		NM_180991	NP_851322	Q6ZQN7	SO4C1_HUMAN	solute carrier organic anion transporter family,	322	Helical; Name=6; (Potential).				cell differentiation|multicellular organismal development|sodium-independent organic anion transport|spermatogenesis	basolateral plasma membrane|integral to membrane	sodium-independent organic anion transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|pancreas(1)	4		all_cancers(142;1.86e-08)|all_epithelial(76;5.24e-12)|Prostate(80;0.00124)|Colorectal(57;0.00332)|Ovarian(225;0.024)|Lung NSC(167;0.0402)|all_lung(232;0.0486)		Epithelial(69;4.07e-14)|COAD - Colon adenocarcinoma(37;0.00986)		AAGCAAAGATCCATGATAGAA	0.363													9	35					0	0	0.000442599	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101811446	101811446	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:101811446C>T	uc003knn.2	-	4	1026	c.854G>A	c.(853-855)GGA>GAA	p.G285E	SLCO6A1_uc003kno.2_Missense_Mutation_p.G223E|SLCO6A1_uc003knp.2_Missense_Mutation_p.G285E|SLCO6A1_uc003knq.2_Missense_Mutation_p.G223E	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	285	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		TAGTGGTGCTCCTAGCACATA	0.328													20	108					0	0	0.000295444	0	0
PRR16	51334	broad.mit.edu	37	5	120021835	120021835	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:120021835G>A	uc003ksq.2	+	2	509	c.346G>A	c.(346-348)GTC>ATC	p.V116I	PRR16_uc003ksp.2_Missense_Mutation_p.V93I|PRR16_uc003ksr.2_Missense_Mutation_p.V46I	NM_016644	NP_057728	Q569H4	PRR16_HUMAN	proline rich 16	116	Pro-rich.									pancreas(2)|ovary(1)	3		all_cancers(142;0.0464)|Prostate(80;0.00446)	KIRC - Kidney renal clear cell carcinoma(527;0.159)|Kidney(363;0.221)	OV - Ovarian serous cystadenocarcinoma(64;0.000126)|Epithelial(69;0.000331)|all cancers(49;0.00169)		TATCCTCACGGTCCTGAGAAA	0.522													33	29					0	0	0.000409698	0	0
SNCAIP	9627	broad.mit.edu	37	5	121761086	121761086	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:121761086G>A	uc003ksw.1	+	5	1248	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	SNCAIP_uc011cwl.1_Intron|SNCAIP_uc010jct.2_Missense_Mutation_p.E348K|SNCAIP_uc003ksx.1_Missense_Mutation_p.E395K|SNCAIP_uc003ksy.1_Intron|SNCAIP_uc003ksz.1_Intron|SNCAIP_uc010jcu.2_Intron|SNCAIP_uc011cwm.1_Intron|SNCAIP_uc003kta.1_Intron|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.E42K|SNCAIP_uc010jcx.1_Intron	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	348					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		AATTCACGACGAAAATGGAAA	0.438													21	95					0	0	0.000586117	0	0
SLC27A6	28965	broad.mit.edu	37	5	128320843	128320843	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:128320843G>A	uc003kuy.2	+	3	895	c.499G>A	c.(499-501)GAA>AAA	p.E167K	SLC27A6_uc003kuz.2_Missense_Mutation_p.E167K	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	167					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		TGGAACGGTAGAAGAAATCCT	0.388													8	15					0	0	0.000442599	0	0
DNAJC18	202052	broad.mit.edu	37	5	138761999	138761999	+	Missense_Mutation	SNP	G	A	A	rs143797552		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:138761999G>A	uc003len.2	-	4	426	c.421C>T	c.(421-423)CGC>TGC	p.R141C	DNAJC18_uc010jff.2_Intron	NM_152686	NP_689899	Q9H819	DJC18_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 18	141	J.				protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			ovary(1)|kidney(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TCATCATAGCGAAGTCTCTTA	0.448													11	58					0	0	0.000219431	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181133	140181133	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140181133C>T	uc003lhf.2	+	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.F117F	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	117	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGCAGGTTTTCCATGTGGAGG	0.537													30	94					0	0	0.001512	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181796	140181796	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140181796C>T	uc003lhf.2	+	1	1014	c.1014C>T	c.(1012-1014)CTC>CTT	p.L338L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Silent_p.L338L	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	338	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGTTCTACTCGAAATTGTGG	0.398													31	35					0	0	0.000409698	0	0
PCDHA4	56144	broad.mit.edu	37	5	140188595	140188595	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140188595C>T	uc003lhi.2	+	1	1924	c.1823C>T	c.(1822-1824)TCG>TTG	p.S608L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Missense_Mutation_p.S608L|PCDHA4_uc011daa.1_Missense_Mutation_p.S608L	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	608	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGGCTTTCGTACGAGCTG	0.677													17	34					0	0	0.00074312	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203025	140203025	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140203025G>A	uc003lhl.2	+	1	1665	c.1665G>A	c.(1663-1665)CTG>CTA	p.L555L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.L555L|PCDHA5_uc003lhj.1_Silent_p.L555L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	555	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGTTCGTGCTGGACGAGAACG	0.706													24	38					0	0	0.00178596	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208509	140208509	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140208509C>T	uc003lho.2	+	1	860	c.833C>T	c.(832-834)TCA>TTA	p.S278L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Missense_Mutation_p.S278L|PCDHA6_uc011dab.1_Missense_Mutation_p.S278L	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	278	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGGCAATTTCATATTCTTTT	0.388													15	73					0	0	0.000422831	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503169	140503169	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140503169T>G	uc003lip.1	+	1	1589	c.1589T>G	c.(1588-1590)GTG>GGG	p.V530G		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	530	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGTTCCGCGTGGGCGCCTCA	0.672													11	49					0	0	0.00136819	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531314	140531314	+	Silent	SNP	G	A	A	rs139574362	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140531314G>A	uc003lir.2	+	1	1476	c.1476G>A	c.(1474-1476)CAG>CAA	p.Q492Q	PCDHB6_uc011dah.1_Silent_p.Q356Q	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	492	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCCGCCCCAGGACCCGCACC	0.652													16	53					0	0	0.000958276	0	0
PCDHB17	54661	broad.mit.edu	37	5	140537261	140537261	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140537261C>T	uc003lis.2	+	1	1682	c.1682C>T	c.(1681-1683)TCG>TTG	p.S561L		NR_001280				SubName: Full=Protocadherin-psi1;												0						ACTCGCCCTTCGTGCTGTACC	0.711													19	18					0	0	0.000375601	0	0
PCDHB15	56121	broad.mit.edu	37	5	140625542	140625542	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140625542G>A	uc003lje.2	+	1	396	c.396G>A	c.(394-396)GAG>GAA	p.E132E		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	132	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ATTCTCCTGAGTTTCCTGAAA	0.433													37	56					0	0	0.000781405	0	0
PCDHGB1	56104	broad.mit.edu	37	5	140730862	140730862	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140730862C>T	uc003ljo.1	+	1	1035	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc011daq.1_Silent_p.F345F	NM_018922	NP_061745	Q9Y5G3	PCDGD_HUMAN	protocadherin gamma subfamily B, 1 isoform 1	345	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGTGACATTCATGTCCTTCT	0.443													8	20					0	0	0.000157383	0	0
PCDHGB3	56102	broad.mit.edu	37	5	140750382	140750382	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:140750382G>A	uc003ljw.1	+	1	421	c.421G>A	c.(421-423)GAA>AAA	p.E141K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc011dat.1_Missense_Mutation_p.E141K	NM_018924	NP_061747	Q9Y5G1	PCDGF_HUMAN	protocadherin gamma subfamily B, 3 isoform 1	141	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CACTGAGCTGGAAATCAGCGA	0.468													54	75					0	0	0.000781405	0	0
GRXCR2	643226	broad.mit.edu	37	5	145252393	145252393	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:145252393C>T	uc003lns.1	-	1	139	c.139G>A	c.(139-141)GAG>AAG	p.E47K		NM_001080516	NP_001073985	A6NFK2	GRCR2_HUMAN	glutaredoxin, cysteine rich 2	47											0						GGGTATTCCTCCTTTGGTGAC	0.498													43	49					0	0	0.000781405	0	0
LARP1	23367	broad.mit.edu	37	5	154185511	154185511	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:154185511C>T	uc003lvp.2	+	15	3046	c.2617C>T	c.(2617-2619)CAG>TAG	p.Q873*	LARP1_uc003lvo.2_Nonsense_Mutation_p.Q796*	NM_033551	NP_291029	Q6PKG0	LARP1_HUMAN	la related protein isoform 2	873							protein binding|RNA binding			ovary(2)|pancreas(1)|skin(1)	4	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GCCCAAGTTCCAGCATCCTTC	0.507													26	84					0	0	0.000878237	0	0
CYFIP2	26999	broad.mit.edu	37	5	156721794	156721794	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:156721794T>G	uc003lwq.2	+	4	348	c.210T>G	c.(208-210)AAT>AAG	p.N70K	CYFIP2_uc011ddn.1_Intron|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Missense_Mutation_p.N70K|CYFIP2_uc003lws.2_Missense_Mutation_p.N70K|CYFIP2_uc003lwt.2_5'Flank|CYFIP2_uc011ddp.1_5'Flank|CYFIP2_uc003lwp.2_5'UTR	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	70					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			CATTTCAGAATGAGATGCTGG	0.478													68	118					0	0	0.000781405	0	0
ADAM19	8728	broad.mit.edu	37	5	156917439	156917439	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:156917439C>A	uc003lwz.2	-	19	2183	c.2119G>T	c.(2119-2121)GTG>TTG	p.V707L	ADAM19_uc003lww.1_Missense_Mutation_p.V440L|ADAM19_uc003lwy.2_Missense_Mutation_p.V306L|ADAM19_uc011ddr.1_Missense_Mutation_p.V638L	NM_033274	NP_150377	Q9H013	ADA19_HUMAN	ADAM metallopeptidase domain 19 preproprotein	707	Helical; (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|SH3 domain binding|zinc ion binding			ovary(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8	Renal(175;0.00488)	Medulloblastoma(196;0.0359)|all_neural(177;0.14)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			GCCACCAACACTCCAGCTACC	0.512													8	42					5.4927e-09	4.77845e-08	0.000274275	1	0
SOX30	11063	broad.mit.edu	37	5	157065567	157065568	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:157065567_157065568GG>AA	uc003lxb.1	-	4	1892_1893	c.1550_1551CC>TT	c.(1549-1551)TCC>TTT	p.S517F	SOX30_uc003lxc.1_Intron|SOX30_uc011dds.1_Missense_Mutation_p.S212F	NM_178424	NP_848511	O94993	SOX30_HUMAN	SRY (sex determining region Y)-box 30 isoform a	517					regulation of transcription from RNA polymerase II promoter|regulation of transcription, DNA-dependent|response to corticosteroid stimulus|transcription, DNA-dependent	nucleus|nucleus	sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)|central_nervous_system(1)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.138)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGTCTGTTTGGGAAGGCCCAGT	0.54													4	15					0	0	6.4e-05	0	0
GABRB2	2561	broad.mit.edu	37	5	160758087	160758087	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:160758087C>T	uc003lys.1	-	9	1098	c.880G>A	c.(880-882)GAA>AAA	p.E294K	GABRB2_uc011deh.1_Missense_Mutation_p.E133K|GABRB2_uc003lyr.1_Missense_Mutation_p.E294K|GABRB2_uc003lyt.1_Missense_Mutation_p.E294K|GABRB2_uc010jiu.1_Missense_Mutation_p.E231K	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	294					gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GGGAGAGTTTCCCGGAGGTGG	0.433													57	80					0	0	0.000781405	0	0
TSPAN17	26262	broad.mit.edu	37	5	176083809	176083809	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:176083809C>T	uc003met.2	+	7	977	c.748C>T	c.(748-750)CTC>TTC	p.L250F	TSPAN17_uc003mes.3_Missense_Mutation_p.L139F|TSPAN17_uc003meu.2_Missense_Mutation_p.L247F|TSPAN17_uc003mev.2_Missense_Mutation_p.L250F|TSPAN17_uc003mew.2_Missense_Mutation_p.L247F	NM_012171	NP_036303	Q96FV3	TSN17_HUMAN	transmembrane 4 superfamily member 17 isoform a	247	Helical; (Potential).					integral to membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity				0	all_cancers(89;0.00141)|Renal(175;0.000269)|Lung NSC(126;0.00814)|all_lung(126;0.0133)	Medulloblastoma(196;0.00498)|all_neural(177;0.0212)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGGCATCGCCCTCCTCCAGGT	0.622													9	37					0	0	0.000442599	0	0
GRM6	2916	broad.mit.edu	37	5	178417597	178417597	+	Silent	SNP	G	A	A	rs138201914		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:178417597G>A	uc003mjr.2	-	4	1187	c.1008C>T	c.(1006-1008)ATC>ATT	p.I336I	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	336	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		ACTCACCGTCGATGGAGGCCC	0.617													4	12					0	0	0.00116845	0	0
BTNL8	79908	broad.mit.edu	37	5	180335918	180335918	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr5:180335918G>A	uc003mmp.2	+	2	616	c.382G>A	c.(382-384)GAG>AAG	p.E128K	BTNL8_uc003mmq.2_Missense_Mutation_p.E128K|BTNL8_uc011dhg.1_Intron|BTNL8_uc010jll.2_Missense_Mutation_p.E128K|BTNL8_uc010jlm.2_Intron|BTNL8_uc011dhh.1_5'Flank	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	128	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GGCCATCTGGGAGCTACAGGT	0.428													41	150					0	0	0.000680045	0	0
F13A1	2162	broad.mit.edu	37	6	6305692	6305692	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:6305692C>T	uc003mwv.2	-	3	334	c.211G>A	c.(211-213)GAA>AAA	p.E71K	F13A1_uc011dib.1_Intron	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	71					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TTGTTGTTTTCATACTTGTCA	0.453													24	43					0	0	0.00127121	0	0
DSP	1832	broad.mit.edu	37	6	7585285	7585285	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:7585285C>T	uc003mxp.1	+	24	8069	c.7790C>T	c.(7789-7791)TCC>TTC	p.S2597F	DSP_uc003mxq.1_Missense_Mutation_p.S1998F	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	2597	Globular 2.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		TCCACCATATCCAGCGTCAGG	0.473													33	68					0	0	0.000814825	0	0
SYCP2L	221711	broad.mit.edu	37	6	10928651	10928651	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:10928651C>T	uc003mzo.2	+	18	1752	c.1456C>T	c.(1456-1458)CCG>TCG	p.P486S	SYCP2L_uc011din.1_Intron|SYCP2L_uc010jow.2_Missense_Mutation_p.P106S	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	486						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			gccggtccctccgttcggggt	0.194													17	25					0	0	0.000958276	0	0
HIST1H4F	8361	broad.mit.edu	37	6	26240876	26240876	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:26240876G>A	uc003nhe.1	+	1	223	c.223G>A	c.(223-225)GAG>AAG	p.E75K		NM_003540	NP_003531	P62805	H4_HUMAN	histone cluster 1, H4f	75					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.0945)|Acute lymphoblastic leukemia(11;0.167)				AACCTACACGGAGCACGCCAA	0.582													10	26					0	0	0.000978159	0	0
BTN3A1	11119	broad.mit.edu	37	6	26413718	26413719	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:26413718_26413719CC>TT	uc003nhv.2	+	10	1708_1709	c.1340_1341CC>TT	c.(1339-1341)CCC>CTT	p.P447L	BTN3A1_uc011dkj.1_3'UTR|BTN3A1_uc011dkk.1_Missense_Mutation_p.P395L|BTN3A1_uc010jqj.2_3'UTR	NM_007048	NP_008979	O00481	BT3A1_HUMAN	butyrophilin, subfamily 3, member A1 isoform a	447	Cytoplasmic (Potential).|B30.2/SPRY.				lipid metabolic process	integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2						CTAACTGAGCCCAGAACCAACC	0.475													43	65					0	0	6.4e-05	0	0
OR2B6	26212	broad.mit.edu	37	6	27925712	27925712	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:27925712G>A	uc011dkx.1	+	1	694	c.694G>A	c.(694-696)GAA>AAA	p.E232K		NM_012367	NP_036499	P58173	OR2B6_HUMAN	olfactory receptor, family 2, subfamily B,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACAGTCTGCTGAAGGTCGACA	0.438													37	75					0	0	0.00111076	0	0
SCAND3	114821	broad.mit.edu	37	6	28540105	28540105	+	Silent	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:28540105T>C	uc003nlo.2	-	4	4179	c.3561A>G	c.(3559-3561)GAA>GAG	p.E1187E		NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	1187					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						attcaaaacattctaacaaat	0													10	9					0	0	0.000442599	0	0
OR2J3	442186	broad.mit.edu	37	6	29080007	29080007	+	Nonsense_Mutation	SNP	G	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:29080007G>T	uc011dll.1	+	1	340	c.340G>T	c.(340-342)GAG>TAG	p.E114*		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GGGAACCACAGAGTGTGTCCT	0.498													8	191					0.000442599	0.00380935	0.000442599	1	0
TRIM31	11074	broad.mit.edu	37	6	30079499	30079499	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:30079499G>A	uc003npg.1	-	3	549	c.439C>T	c.(439-441)CAA>TAA	p.Q147*	TRIM31_uc003npi.3_RNA	NM_007028	NP_008959	Q9BZY9	TRI31_HUMAN	tripartite motif protein 31	147	Potential.					mitochondrion	ligase activity|zinc ion binding			lung(1)	1						TGCAAGACTTGGATCTGCTCT	0.507													46	87					0	0	0.000781405	0	0
CFB	629	broad.mit.edu	37	6	31915741	31915741	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:31915741G>A	uc003nyj.3	+	6	1058	c.780G>A	c.(778-780)AAG>AAA	p.K260K	CFB_uc011dor.1_Silent_p.K762K|CFB_uc003nyi.2_Silent_p.K260K	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	260					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						AGAAGCGGAAGATCGTCCTGG	0.552													63	103					0	0	0.000781405	0	0
TNXB	7148	broad.mit.edu	37	6	31977580	31977580	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:31977580G>A	uc011dpc.1	-	12	2324	c.1415C>T	c.(1414-1416)ACC>ATC	p.T472I		NM_032470	NP_115859	P22105	TENX_HUMAN	tenascin XB isoform 2	4088	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GATGGTGCTGGTCCTGGAGGC	0.652													24	90					0	0	0.000339439	0	0
DNAH8	1769	broad.mit.edu	37	6	38810452	38810452	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:38810452C>T	uc003ooe.1	+	33	4567	c.3967C>T	c.(3967-3969)CCA>TCA	p.P1323S		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TCGTAAACTTCCAAAAGGACT	0.328													32	56					0	0	0.000491102	0	0
DNAH8	1769	broad.mit.edu	37	6	38875892	38875892	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:38875892C>T	uc003ooe.1	+	62	9458	c.8858C>T	c.(8857-8859)TCT>TTT	p.S2953F	uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CTCTGCTTTTCTCCAGTAAGT	0.328													20	25					0	0	0.00121646	0	0
LRFN2	57497	broad.mit.edu	37	6	40400396	40400396	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:40400396C>T	uc003oph.1	-	2	922	c.457G>A	c.(457-459)GAT>AAT	p.D153N		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	153	LRR 5.|Extracellular (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					AGGTCCAGATCCTCCAATGTC	0.597													18	34					0	0	0.00121646	0	0
RCAN2	10231	broad.mit.edu	37	6	46216633	46216633	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:46216633C>T	uc003oyb.1	-	2	403	c.88G>A	c.(88-90)GAA>AAA	p.E30K	RCAN2_uc003oyc.1_Missense_Mutation_p.E76K|RCAN2_uc003oyd.1_Missense_Mutation_p.E76K	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	30					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						TCAAATTTTTCCTGATAAAAA	0.368													5	27					0	0	0.00116845	0	0
TDRD6	221400	broad.mit.edu	37	6	46659662	46659662	+	Missense_Mutation	SNP	C	T	T	rs146723237		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:46659662C>T	uc003oyj.2	+	1	3797	c.3797C>T	c.(3796-3798)CCC>CTC	p.P1266L	TDRD6_uc010jze.2_Missense_Mutation_p.P1260L	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1266					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			GCTGAGACACCCTTGAAAACA	0.358													28	55					0	0	0.00106085	0	0
TINAG	27283	broad.mit.edu	37	6	54254602	54254602	+	Missense_Mutation	SNP	C	T	T	rs113922573		TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:54254602C>T	uc003pcj.2	+	11	1456	c.1310C>T	c.(1309-1311)TCC>TTC	p.S437F	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	437				S -> F (in Ref. 2; AAF08931/AAF08932).	cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			GCTGCCAATTCCTGGGGAAAG	0.383													54	65					0	0	0.000781405	0	0
RIMS1	22999	broad.mit.edu	37	6	72968727	72968727	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:72968727C>T	uc003pga.2	+	18	3043	c.2966C>T	c.(2965-2967)TCT>TTT	p.S989F	RIMS1_uc011dyb.1_Missense_Mutation_p.S614F|RIMS1_uc003pgc.2_Missense_Mutation_p.S615F|RIMS1_uc010kaq.2_Missense_Mutation_p.S462F|RIMS1_uc011dyc.1_Missense_Mutation_p.S463F|RIMS1_uc010kar.2_Missense_Mutation_p.S382F|RIMS1_uc011dyd.1_Missense_Mutation_p.S448F|RIMS1_uc003pgf.2_Missense_Mutation_p.S205F|RIMS1_uc003pgg.2_Missense_Mutation_p.S206F|RIMS1_uc003pgi.2_Missense_Mutation_p.S205F|RIMS1_uc003pgh.2_Missense_Mutation_p.S205F|RIMS1_uc003pgd.2_Missense_Mutation_p.S206F|RIMS1_uc003pge.2_Missense_Mutation_p.S206F|RIMS1_uc011dye.1_5'UTR|RIMS1_uc011dyf.1_5'Flank|RIMS1_uc003pgb.3_Missense_Mutation_p.S615F|RIMS1_uc010kas.1_Missense_Mutation_p.S448F	NM_014989	NP_055804	Q86UR5	RIMS1_HUMAN	regulating synaptic membrane exocytosis 1	989					calcium ion-dependent exocytosis|cellular membrane fusion|glutamate secretion|intracellular protein transport|protein complex assembly|regulated secretory pathway|response to stimulus|synaptic vesicle exocytosis|visual perception	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding	p.S989S(1)		ovary(7)|pancreas(2)|breast(1)	10		all_epithelial(107;0.179)|all_hematologic(105;0.212)				AGGTCACGTTCTCCAACCAGA	0.383													36	69					0	0	0.000814825	0	0
KCNQ5	56479	broad.mit.edu	37	6	73787510	73787510	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:73787510G>A	uc003pgk.2	+	5	1165	c.818G>A	c.(817-819)GGA>GAA	p.G273E	KCNQ5_uc003pgj.3_Missense_Mutation_p.G273E|KCNQ5_uc011dyh.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyi.1_Missense_Mutation_p.G273E|KCNQ5_uc010kat.2_Missense_Mutation_p.G273E|KCNQ5_uc011dyj.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyk.1_Missense_Mutation_p.G32E	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	273	Helical; Name=Segment S5; (Potential).				protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGGTACATAGGATTTTTGGTT	0.348													10	45					0	0	0.000442599	0	0
FILIP1	27145	broad.mit.edu	37	6	76023724	76023724	+	Silent	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:76023724T>C	uc003pia.2	-	5	2197	c.1824A>G	c.(1822-1824)AGA>AGG	p.R608R	FILIP1_uc003phy.1_Silent_p.R608R|FILIP1_uc003phz.2_Silent_p.R509R|FILIP1_uc010kbe.2_Silent_p.R611R|FILIP1_uc003pib.1_Silent_p.R360R	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	608										skin(3)|ovary(1)	4						TTGTTATTTCTCTTTCCACTT	0.383													73	120					0	0	0.000781405	0	0
MRAP2	112609	broad.mit.edu	37	6	84765131	84765131	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:84765131C>T	uc003pkg.3	+	2	284	c.94C>T	c.(94-96)CCA>TCA	p.P32S	MRAP2_uc010kbo.2_5'UTR	NM_138409	NP_612418	Q96G30	MRAP2_HUMAN	melanocortin 2 receptor accessory protein 2	32					positive regulation of cAMP biosynthetic process|protein localization at cell surface	endoplasmic reticulum|plasma membrane	corticotropin hormone receptor binding|type 1 melanocortin receptor binding|type 3 melanocortin receptor binding|type 4 melanocortin receptor binding|type 5 melanocortin receptor binding			skin(2)	2						TGAGATTGGACCAGTTTCCTT	0.393													17	21					0	0	0.000958276	0	0
MDN1	23195	broad.mit.edu	37	6	90390347	90390347	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:90390347G>A	uc003pnn.1	-	74	12342	c.12226C>T	c.(12226-12228)CCC>TCC	p.P4076S		NM_014611	NP_055426	Q9NU22	MDN1_HUMAN	MDN1, midasin homolog	4076					protein complex assembly|regulation of protein complex assembly	nucleus	ATP binding|ATPase activity|unfolded protein binding			ovary(8)|skin(2)	10		all_cancers(76;1.47e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00246)		BRCA - Breast invasive adenocarcinoma(108;0.0193)		CGAGGCAGGGGGCTCTCCTTC	0.597													11	9					0	0	0.00185496	0	0
GJA10	84694	broad.mit.edu	37	6	90604254	90604254	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:90604254A>G	uc011eaa.1	+	1	67	c.67A>G	c.(67-69)AAA>GAA	p.K23E		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	23	Helical; (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		CATAGTGGGGAAAATCTGGCT	0.473													38	39					0	0	0.00128727	0	0
AKAP7	9465	broad.mit.edu	37	6	131520642	131520642	+	Missense_Mutation	SNP	G	A	A	rs34221901	byFrequency	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:131520642G>A	uc003qck.2	+	6	664	c.631G>A	c.(631-633)GGA>AGA	p.G211R	AKAP7_uc011ebz.1_Missense_Mutation_p.G189R|AKAP7_uc003qcl.1_Missense_Mutation_p.G92R	NM_016377	NP_057461	O43687	AKA7A_HUMAN	A-kinase anchor protein 7 isoform gamma	Error:Variant_position_missing_in_O43687_after_alignment					intracellular signal transduction|ion transport	apical plasma membrane|intracellular|lateral plasma membrane	protein kinase A binding			ovary(2)	2	Breast(56;0.152)			GBM - Glioblastoma multiforme(226;0.0184)|OV - Ovarian serous cystadenocarcinoma(155;0.0345)		CATCCTGGTAGGAGAGAGCAG	0.373													15	9					0	0	0.000958276	0	0
TAAR6	319100	broad.mit.edu	37	6	132891606	132891606	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:132891606G>A	uc011eck.1	+	1	146	c.146G>A	c.(145-147)GGA>GAA	p.G49E		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	49	Helical; Name=1; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		GCTGTGTTTGGAAACCTCCTG	0.527													29	26					0	0	0.000339439	0	0
SLC2A12	154091	broad.mit.edu	37	6	134312437	134312437	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:134312437C>T	uc003qem.1	-	5	1881	c.1710G>A	c.(1708-1710)GTG>GTA	p.V570V		NM_145176	NP_660159	Q8TD20	GTR12_HUMAN	solute carrier family 2 (facilitated glucose	570	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity			ovary(1)	1	Breast(56;0.214)|Colorectal(23;0.221)			OV - Ovarian serous cystadenocarcinoma(155;0.0101)|GBM - Glioblastoma multiforme(68;0.0123)		TGTTGTTTTTCACATAGTTCC	0.368													27	24					0	0	0.00127121	0	0
PDE7B	27115	broad.mit.edu	37	6	136475307	136475307	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:136475307G>A	uc003qgp.2	+	7	876	c.573G>A	c.(571-573)GAG>GAA	p.E191E	uc003qgq.1_Intron|PDE7B_uc003qgr.2_Silent_p.E243E	NM_018945	NP_061818	Q9NP56	PDE7B_HUMAN	phosphodiesterase 7B	191	Catalytic (By similarity).				signal transduction|synaptic transmission	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding	p.E191D(1)		ovary(1)	1	Colorectal(23;0.24)			OV - Ovarian serous cystadenocarcinoma(155;0.0136)|GBM - Glioblastoma multiforme(68;0.0147)	Dyphylline(DB00651)|Ketotifen(DB00920)	ACCTGAAAGAGCCAAAGGTAA	0.512													4	14					0	0	0.00024832	0	0
GPR31	2853	broad.mit.edu	37	6	167570453	167570453	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:167570453G>A	uc011egq.1	-	1	867	c.867C>T	c.(865-867)TTC>TTT	p.F289F		NM_005299	NP_005290	O00270	GPR31_HUMAN	G protein-coupled receptor 31	289	Cytoplasmic (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;4.81e-20)|BRCA - Breast invasive adenocarcinoma(81;4.45e-06)|GBM - Glioblastoma multiforme(31;0.00492)		AGGAGCTCCTGAAGGTGGGGC	0.592													17	29					0	0	0.000566183	0	0
CARD11	84433	broad.mit.edu	37	7	2951870	2951870	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:2951870C>T	uc003smv.2	-	23	3484	c.3080G>A	c.(3079-3081)CGA>CAA	p.R1027Q		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1027	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		GTTCTTCTCTCGGGAGTAGAT	0.592			Mis		DLBCL								9	33					0	0	0.000274275	0	0
RNF216	54476	broad.mit.edu	37	7	5780816	5780816	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:5780816C>T	uc003soy.1	-	4	851	c.661G>A	c.(661-663)GAA>AAA	p.E221K	RNF216_uc010ksz.1_5'UTR|RNF216_uc010kta.1_Intron|RNF216_uc011jwj.1_Intron|RNF216_uc003sox.1_Missense_Mutation_p.E278K	NM_207116	NP_996999	Q9NWF9	RN216_HUMAN	ring finger protein 216 isoform b	221					apoptosis|interspecies interaction between organisms|proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked ubiquitination|regulation of defense response to virus by host|regulation of interferon-beta production	cytoplasm|nucleus|nucleus	ligase activity|protein binding|protein binding|zinc ion binding			ovary(3)|breast(2)	5		Ovarian(82;0.07)		UCEC - Uterine corpus endometrioid carcinoma (126;0.135)|OV - Ovarian serous cystadenocarcinoma(56;2.69e-13)		TGCTGGGGTTCCGGCCTTGGA	0.547													17	53					0	0	0.000958276	0	0
EIF2AK1	27102	broad.mit.edu	37	7	6064348	6064348	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:6064348C>T	uc003spp.2	-	15	1995	c.1849G>A	c.(1849-1851)GAC>AAC	p.D617N	EIF2AK1_uc003spq.2_Missense_Mutation_p.D616N|EIF2AK1_uc011jwm.1_Missense_Mutation_p.D493N	NM_014413	NP_055228	Q9BQI3	E2AK1_HUMAN	eukaryotic translation initiation factor 2-alpha	617					negative regulation of hemoglobin biosynthetic process|negative regulation of translational initiation by iron|protein autophosphorylation|response to external stimulus|response to stress	cytoplasm	ATP binding|eukaryotic translation initiation factor 2alpha kinase activity|heme binding|protein homodimerization activity			upper_aerodigestive_tract(1)|stomach(1)|lung(1)|central_nervous_system(1)	4		Ovarian(82;0.0423)		UCEC - Uterine corpus endometrioid carcinoma (126;0.106)|OV - Ovarian serous cystadenocarcinoma(56;5.22e-14)		ACCCCTTTGTCTTGAGAAAGG	0.378													22	45					0	0	0.00047179	0	0
COL28A1	340267	broad.mit.edu	37	7	7472319	7472319	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:7472319G>A	uc003src.1	-	24	1990	c.1873C>T	c.(1873-1875)CCT>TCT	p.P625S	COL28A1_uc011jxe.1_Missense_Mutation_p.P308S|COL28A1_uc003srd.2_Missense_Mutation_p.P180S|COL28A1_uc003sre.1_Missense_Mutation_p.P46S	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	625					cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		GGTCCCCGAGGGCCTTGGACA	0.473													16	32					0	0	0.000958276	0	0
MIOS	54468	broad.mit.edu	37	7	7646670	7646670	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:7646670A>G	uc003srf.2	+	13	2883	c.2575A>G	c.(2575-2577)ATG>GTG	p.M859V	MIOS_uc003srg.2_Missense_Mutation_p.M394V|MIOS_uc010ktq.2_Missense_Mutation_p.M254V	NM_019005	NP_061878	Q9NXC5	MIO_HUMAN	missing oocyte, meiosis regulator, homolog	859											0						GTGTAAATGTATGCAGTTGGA	0.408													34	39					0	0	0.000437636	0	0
TMEM195	392636	broad.mit.edu	37	7	15427065	15427065	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:15427065T>C	uc003stb.1	-	9	1093	c.923A>G	c.(922-924)AAA>AGA	p.K308R		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	308					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						AAGTCTTGGTTTACCTGGACC	0.373													25	98					0	0	0.000878237	0	0
EVX1	2128	broad.mit.edu	37	7	27285648	27285648	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:27285648C>T	uc003szd.1	+	3	1314	c.828C>T	c.(826-828)CAC>CAT	p.H276H	EVX1_uc011jzn.1_Silent_p.H94H|EVX1_uc010kuy.1_3'UTR	NM_001989	NP_001980	P49640	EVX1_HUMAN	even-skipped homeobox 1	276						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						TCCCATCGCACCTGCCCCTGC	0.741													4	11					0	0	0.000602214	0	0
AMPH	273	broad.mit.edu	37	7	38500904	38500904	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:38500904G>A	uc003tgu.2	-	11	1065	c.996C>T	c.(994-996)ATC>ATT	p.I332I	AMPH_uc003tgv.2_Silent_p.I332I|AMPH_uc003tgt.2_Silent_p.I85I	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	332					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						TTGTCACACTGATTTCTGGAA	0.507													39	66					0	0	0.00170553	0	0
ABCA13	154664	broad.mit.edu	37	7	48314058	48314058	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:48314058C>T	uc003toq.2	+	17	4820	c.4795C>T	c.(4795-4797)CAC>TAC	p.H1599Y	ABCA13_uc010kyr.2_Missense_Mutation_p.H1102Y	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1599					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTCCATTTATCACTTAGCTAG	0.343													112	137					0	0	0.000781405	0	0
ABCA13	154664	broad.mit.edu	37	7	48547545	48547545	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:48547545G>A	uc003toq.2	+	50	13449	c.13424G>A	c.(13423-13425)AGC>AAC	p.S4475N	ABCA13_uc010kys.1_Missense_Mutation_p.S1550N|ABCA13_uc010kyt.1_RNA|ABCA13_uc010kyu.1_Missense_Mutation_p.S205N	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	4475	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TCCATCGGCAGCTCTGTGGTG	0.552													5	24					0	0	0.000602214	0	0
CLDN4	1364	broad.mit.edu	37	7	73245737	73245737	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:73245737C>T	uc003tzi.3	+	1	545	c.206C>T	c.(205-207)TCG>TTG	p.S69L	RFC2_uc011kfa.1_Intron|CLDN4_uc003tzh.1_RNA	NM_001305	NP_001296	O14493	CLD4_HUMAN	claudin 4	69	Extracellular (Potential).				calcium-independent cell-cell adhesion	integral to plasma membrane|tight junction	identical protein binding|structural molecule activity|transmembrane receptor activity				0		Lung NSC(55;0.159)				GTGTACGACTCGCTGCTGGCA	0.647													16	29					0	0	0.000566183	0	0
HGF	3082	broad.mit.edu	37	7	81381541	81381541	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:81381541C>T	uc003uhl.2	-	5	685	c.520G>A	c.(520-522)GAA>AAA	p.E174K	HGF_uc003uhm.2_Missense_Mutation_p.E169K|HGF_uc003uhn.1_Missense_Mutation_p.E174K|HGF_uc003uho.1_Missense_Mutation_p.E169K|HGF_uc003uhp.2_Missense_Mutation_p.E174K	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	174	Kringle 1.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						CAGTAGTTTTCCTGTAGGTCT	0.418													21	36					0	0	0.000375601	0	0
PCLO	27445	broad.mit.edu	37	7	82457235	82457235	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:82457235G>A	uc003uhx.2	-	17	14586	c.14297C>T	c.(14296-14298)CCT>CTT	p.P4766L	PCLO_uc003uhv.2_Missense_Mutation_p.P4766L|PCLO_uc003uht.1_Missense_Mutation_p.P208L|PCLO_uc003uhu.1_Missense_Mutation_p.P187L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4628	C2 1.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATTCCACTCAGGATTAAGACT	0.333													9	15					0	0	0.000274275	0	0
PCLO	27445	broad.mit.edu	37	7	82583769	82583769	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:82583769G>A	uc003uhx.2	-	5	6789	c.6500C>T	c.(6499-6501)TCG>TTG	p.S2167L	PCLO_uc003uhv.2_Missense_Mutation_p.S2167L|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2098					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TGAAGGCTCCGAGTAGGTCAA	0.413													18	60					0	0	0.00188189	0	0
GRM3	2913	broad.mit.edu	37	7	86415993	86415993	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:86415993C>T	uc003uid.2	+	3	1984	c.885C>T	c.(883-885)TTC>TTT	p.F295F	GRM3_uc010lef.2_Silent_p.F293F|GRM3_uc010leg.2_Silent_p.F167F|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	295	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	ATGCCTCCTTCACCTGGGTGG	0.677													8	26					0	0	0.000442599	0	0
EPHB4	2050	broad.mit.edu	37	7	100404068	100404068	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:100404068G>A	uc003uwn.1	-	14	2949	c.2458C>T	c.(2458-2460)CCG>TCG	p.P820S	EPHB4_uc003uwm.1_Missense_Mutation_p.P727S|EPHB4_uc010lhj.1_Missense_Mutation_p.P820S	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	820	Cytoplasmic (Potential).|Protein kinase.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					TCCCAGTACGGCCTCTCCCCA	0.567													7	36					0	0	0.000157383	0	0
CUX1	1523	broad.mit.edu	37	7	101840249	101840249	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:101840249C>T	uc003uyx.3	+	15	1596	c.1558C>T	c.(1558-1560)CAA>TAA	p.Q520*	CUX1_uc003uys.3_Nonsense_Mutation_p.Q531*|CUX1_uc003uyt.2_Intron|CUX1_uc011kkn.1_Intron|CUX1_uc003uyw.2_Intron|CUX1_uc003uyv.2_Intron|CUX1_uc003uyu.2_Intron	NM_181552	NP_853530	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform a	520					negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						CATATCTTCCCAAAGTCCATT	0.522													12	57					0	0	0.00136819	0	0
SLC26A5	375611	broad.mit.edu	37	7	103014871	103014871	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:103014871G>C	uc003vbz.2	-	20	2446	c.2210C>G	c.(2209-2211)GCC>GGC	p.A737G	SLC26A5_uc003vbt.1_Intron|SLC26A5_uc003vbu.1_Intron|SLC26A5_uc003vbv.1_Intron|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.A705G|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	737	Cytoplasmic (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						GGCAGGAGTGGCATTGGGCTC	0.502													9	29					0	0	0.000274275	0	0
SLC26A5	375611	broad.mit.edu	37	7	103048315	103048315	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:103048315G>A	uc003vbz.2	-	8	1107	c.871C>T	c.(871-873)CCT>TCT	p.P291S	SLC26A5_uc003vbt.1_Missense_Mutation_p.P291S|SLC26A5_uc003vbu.1_Missense_Mutation_p.P291S|SLC26A5_uc003vbv.1_Missense_Mutation_p.P291S|SLC26A5_uc003vbw.2_RNA|SLC26A5_uc003vbx.2_Missense_Mutation_p.P291S|SLC26A5_uc003vby.2_RNA|SLC26A5_uc010liy.2_RNA	NM_198999	NP_945350	P58743	S26A5_HUMAN	prestin isoform a	291	Helical; Name=7; (Potential).				regulation of cell shape|sensory perception of sound	integral to membrane	secondary active sulfate transmembrane transporter activity			ovary(1)	1						AACTCTAAAGGAATAGGCGCC	0.453													16	49					0	0	0.000422831	0	0
RELN	5649	broad.mit.edu	37	7	103207091	103207091	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:103207091C>T	uc003vca.2	-	32	4864	c.4704G>A	c.(4702-4704)GCG>GCA	p.A1568A	RELN_uc010liz.2_Silent_p.A1568A	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1568					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		CAGGTGTCTTCGCGTCCTGTG	0.473													8	47					0	0	0.000157383	0	0
TFEC	22797	broad.mit.edu	37	7	115590988	115590988	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:115590988C>T	uc003vhj.1	-	6	639	c.455G>A	c.(454-456)AGG>AAG	p.R152K	TFEC_uc003vhk.1_Missense_Mutation_p.R123K|TFEC_uc003vhl.3_Missense_Mutation_p.R123K|TFEC_uc011kmw.1_Missense_Mutation_p.R242K	NM_012252	NP_036384	O14948	TFEC_HUMAN	transcription factor EC isoform a	152	Helix-loop-helix motif.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity			large_intestine(1)	1			STAD - Stomach adenocarcinoma(10;0.00878)			AATATTATACCTTCTTCTTCT	0.274													17	35					0	0	0.00074312	0	0
C7orf58	79974	broad.mit.edu	37	7	120767263	120767263	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:120767263C>T	uc003vjq.3	+	10	1701	c.1254C>T	c.(1252-1254)TCC>TCT	p.S418S	C7orf58_uc003vjr.1_Silent_p.S418S|C7orf58_uc003vjs.3_Silent_p.S418S|C7orf58_uc003vjt.3_Silent_p.S198S|C7orf58_uc010lkk.1_Silent_p.S198S	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	418						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					CATCACTTTCCATATTTTCTG	0.284													11	61					0	0	0.00185496	0	0
C7orf58	79974	broad.mit.edu	37	7	120907287	120907287	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:120907287C>T	uc003vjq.3	+	21	3099	c.2652C>T	c.(2650-2652)ATC>ATT	p.I884I		NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1	884						endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TACTCAATATCCTAGTGATCA	0.184													4	21					0	0	0.000602214	0	0
FSCN3	29999	broad.mit.edu	37	7	127235784	127235784	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:127235784C>T	uc003vmd.1	+	2	787	c.568C>T	c.(568-570)CAC>TAC	p.H190Y	FSCN3_uc003vmc.1_Missense_Mutation_p.H145Y|FSCN3_uc011kog.1_RNA|FSCN3_uc011koh.1_Missense_Mutation_p.H56Y|FSCN3_uc010llc.1_Missense_Mutation_p.H190Y	NM_020369	NP_065102	Q9NQT6	FSCN3_HUMAN	fascin 3	190						actin cytoskeleton|cytoplasm	actin filament binding|protein binding, bridging			ovary(1)	1						TGGATGCTACCACCTGGAGAC	0.587													29	35					0	0	0.000409698	0	0
MEST	4232	broad.mit.edu	37	7	130143796	130143796	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:130143796G>T	uc003vqg.2	+	11	1066	c.849G>T	c.(847-849)TTG>TTT	p.L283F	MEST_uc003vqc.2_Missense_Mutation_p.L274F|MEST_uc003vqd.2_Missense_Mutation_p.L240F|MEST_uc003vqf.2_Missense_Mutation_p.L274F|MEST_uc011kph.1_Missense_Mutation_p.L269F|MEST_uc010lmg.2_Intron	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	283	Helical; (Potential).				mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					ATGGGCCATTGGATCCTGTAA	0.408													13	386					0.00074312	0.0063619	0.00074312	1	0
MGAM	8972	broad.mit.edu	37	7	141747655	141747655	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:141747655G>A	uc003vwy.2	+	22	2623	c.2569G>A	c.(2569-2571)GAT>AAT	p.D857N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	857	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ACTTTTCTGGGATAATGGGGA	0.448													4	17					0	0	0.00116845	0	0
EPHB6	2051	broad.mit.edu	37	7	142568069	142568069	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:142568069C>G	uc011kst.1	+	18	3497	c.2710C>G	c.(2710-2712)CGG>GGG	p.R904G	EPHB6_uc011ksu.1_Missense_Mutation_p.R904G|EPHB6_uc003wbs.2_Missense_Mutation_p.R612G|EPHB6_uc003wbt.2_Missense_Mutation_p.R378G|EPHB6_uc003wbu.2_Missense_Mutation_p.R612G|EPHB6_uc003wbv.2_Missense_Mutation_p.R288G	NM_004445	NP_004436	O15197	EPHB6_HUMAN	ephrin receptor EphB6 precursor	904	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|large_intestine(4)|central_nervous_system(3)|stomach(1)|skin(1)|ovary(1)|pancreas(1)	19	Melanoma(164;0.059)					GGACCGTGCCCGGCGGCCTCA	0.582													25	90					0	0	0.00106085	0	0
CLCN1	1180	broad.mit.edu	37	7	143039050	143039050	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:143039050C>T	uc003wcr.1	+	15	1698	c.1611C>T	c.(1609-1611)TCC>TCT	p.S537S	CLCN1_uc011ktc.1_Silent_p.S149S	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	537					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					GTGCCGTTTCCCACACAGTCT	0.527													13	28					0	0	0.000219431	0	0
WDR60	55112	broad.mit.edu	37	7	158672385	158672385	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr7:158672385G>A	uc003woe.3	+	5	742	c.584G>A	c.(583-585)GGA>GAA	p.G195E	WDR60_uc010lqv.2_RNA	NM_018051	NP_060521	Q8WVS4	WDR60_HUMAN	WD repeat domain 60	195										ovary(2)|breast(1)|central_nervous_system(1)	4	Ovarian(565;0.152)	all_cancers(7;1.25e-09)|all_epithelial(9;0.000894)|all_hematologic(28;0.00603)	OV - Ovarian serous cystadenocarcinoma(82;0.00174)	UCEC - Uterine corpus endometrioid carcinoma (81;0.19)|STAD - Stomach adenocarcinoma(7;0.18)		CTGCAGTACGGAGACAGCAAG	0.393													20	14					0	0	0.00188189	0	0
CSMD1	64478	broad.mit.edu	37	8	3256922	3256922	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:3256922G>A	uc011kwk.1	-	16	2789	c.2399C>T	c.(2398-2400)ACT>ATT	p.T800I	CSMD1_uc011kwj.1_Missense_Mutation_p.T192I	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	800	Extracellular (Potential).|CUB 5.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CCTGTCAAAAGTTATTTTGAT	0.358													29	79					0	0	0.00148497	0	0
MFHAS1	9258	broad.mit.edu	37	8	8654904	8654904	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:8654904G>A	uc003wsj.1	-	2	3659	c.3096C>T	c.(3094-3096)CCC>CCT	p.P1032P		NM_004225	NP_004216	Q9Y4C4	MFHA1_HUMAN	malignant fibrous histiocytoma amplified	1032											0		Hepatocellular(245;0.217)		COAD - Colon adenocarcinoma(149;0.124)		CAGTCGGCGTGGGTGGGTAAA	0.567													14	17					0	0	0.000308642	0	0
SOX7	83595	broad.mit.edu	37	8	10583598	10583598	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:10583598G>A	uc003wtf.2	-	2	896	c.817C>T	c.(817-819)CCT>TCT	p.P273S	SOX7_uc011kwz.1_Missense_Mutation_p.P325S	NM_031439	NP_113627	Q9BT81	SOX7_HUMAN	SRY-box 7	273	Sox C-terminal.				endoderm formation|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|positive regulation of caspase activity|regulation of canonical Wnt receptor signaling pathway	cytoplasm|nucleus	transcription regulatory region DNA binding			breast(1)	1				COAD - Colon adenocarcinoma(149;0.0732)		CCGGGTACAGGGGACATCATG	0.677													12	30					0	0	0.000308642	0	0
SGCZ	137868	broad.mit.edu	37	8	13948061	13948061	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:13948061C>T	uc003wwq.2	-	8	1490	c.830G>A	c.(829-831)CGA>CAA	p.R277Q	SGCZ_uc010lss.2_Missense_Mutation_p.R230Q	NM_139167	NP_631906	Q96LD1	SGCZ_HUMAN	sarcoglycan zeta	264	Extracellular (Potential).				cytoskeleton organization	cytoplasm|cytoskeleton|integral to membrane|sarcolemma				ovary(2)|central_nervous_system(1)	3				all cancers(2;0.000643)|Colorectal(111;0.00674)|COAD - Colon adenocarcinoma(73;0.0193)|GBM - Glioblastoma multiforme(2;0.026)		CACTGTCTGTCGAGAACTTGA	0.458													34	59					0	0	0.00111076	0	0
PSD3	23362	broad.mit.edu	37	8	18622975	18622975	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:18622975G>A	uc003wza.2	-	9	2259	c.2156C>T	c.(2155-2157)TCC>TTC	p.S719F	PSD3_uc003wyy.2_Missense_Mutation_p.S185F|PSD3_uc003wyz.2_Missense_Mutation_p.S20F	NM_015310	NP_056125	Q9NYI0	PSD3_HUMAN	ADP-ribosylation factor guanine nucleotide	720	SEC7.				regulation of ARF protein signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	ARF guanyl-nucleotide exchange factor activity			ovary(3)	3				Colorectal(111;0.0281)|READ - Rectum adenocarcinoma(644;0.183)		CAGATCCTTGGAGAAATCAAC	0.398													23	69					0	0	0.000878237	0	0
SH2D4A	63898	broad.mit.edu	37	8	19250940	19250940	+	Missense_Mutation	SNP	C	T	T	rs116257653	by1000genomes	TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:19250940C>T	uc003wzb.2	+	9	1496	c.1160C>T	c.(1159-1161)TCG>TTG	p.S387L	SH2D4A_uc011kym.1_Missense_Mutation_p.S342L|SH2D4A_uc003wzc.2_Missense_Mutation_p.S387L	NM_022071	NP_071354	Q9H788	SH24A_HUMAN	SH2 domain containing 4A	387	SH2.					cytoplasm|nucleus	protein binding				0				Colorectal(111;0.0732)		TCCTATCTGTCGGAGGACGGC	0.532													43	76					0	0	0.000509022	0	0
ADAM7	8756	broad.mit.edu	37	8	24349461	24349461	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:24349461G>A	uc003xeb.2	+	14	1515	c.1402G>A	c.(1402-1404)GAT>AAT	p.D468N	ADAM7_uc003xec.2_Missense_Mutation_p.D240N	NM_003817	NP_003808	Q9H2U9	ADAM7_HUMAN	a disintegrin and metalloproteinase domain 7	468	Disintegrin.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(1)|kidney(1)	5		Prostate(55;0.0181)		Colorectal(74;0.0199)|COAD - Colon adenocarcinoma(73;0.0754)|BRCA - Breast invasive adenocarcinoma(99;0.182)		AGATGAATGTGATTTTCCTGA	0.443													16	31					0	0	0.000308642	0	0
EBF2	64641	broad.mit.edu	37	8	25708165	25708165	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:25708165C>T	uc003xes.1	-	15	1658	c.1641G>A	c.(1639-1641)AGG>AGA	p.R547R	PPP2R2A_uc003xek.2_Intron|EBF2_uc010lug.1_RNA	NM_022659	NP_073150	Q9HAK2	COE2_HUMAN	early B-cell factor 2	547					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding			ovary(3)|skin(1)	4		all_cancers(63;0.0989)|Ovarian(32;2.74e-05)|all_epithelial(46;0.0608)|Prostate(55;0.0845)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0277)|Epithelial(17;3.29e-10)|Colorectal(74;0.00383)|COAD - Colon adenocarcinoma(73;0.00738)		AGCCTTGGGGCCTGATGACAG	0.522													31	69					0	0	0.00178596	0	0
DPYSL2	1808	broad.mit.edu	37	8	26505265	26505265	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:26505265C>T	uc003xfb.1	+	11	1580	c.1230C>T	c.(1228-1230)GTC>GTT	p.V410V	DPYSL2_uc003xfa.2_Silent_p.V515V|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_Silent_p.V374V	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	410					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		CCGACCTGGTCATCTGGGACC	0.527													23	41					0	0	0.000586117	0	0
PREX2	80243	broad.mit.edu	37	8	69058566	69058566	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:69058566C>T	uc003xxv.1	+	34	4237	c.4210C>T	c.(4210-4212)CAT>TAT	p.H1404Y		NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	1404					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						GTTTAAAATTCATCCTGTTCT	0.318													30	47					0	0	0.00178596	0	0
C8orf34	116328	broad.mit.edu	37	8	69621301	69621301	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:69621301C>T	uc010lyz.2	+	9	1105	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	C8orf34_uc003xyb.2_Silent_p.I327I	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	352					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			ATGAAAAAATCCCAGATTCAT	0.333													7	23					0	0	0.000157383	0	0
KCNB2	9312	broad.mit.edu	37	8	73850152	73850152	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:73850152C>T	uc003xzb.2	+	3	3150	c.2562C>T	c.(2560-2562)TCC>TCT	p.S854S		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	854	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TGGGCTCTTCCTCCCCGCAGG	0.502													29	44					0	0	0.00106085	0	0
OSGIN2	734	broad.mit.edu	37	8	90937327	90937327	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:90937327C>A	uc003yeg.2	+	6	1431	c.1085C>A	c.(1084-1086)ACT>AAT	p.T362N	OSGIN2_uc003yeh.2_Missense_Mutation_p.T406N	NM_004337	NP_004328	Q9Y236	OSGI2_HUMAN	oxidative stress induced growth inhibitor family	362					germ cell development|meiosis						0			BRCA - Breast invasive adenocarcinoma(11;0.0344)			ATGATGTGTACTCAGTCATAT	0.383													57	83					2.73381e-35	2.3869e-34	0.000781405	1	0
ZFPM2	23414	broad.mit.edu	37	8	106815096	106815096	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:106815096G>A	uc003ymd.2	+	8	2809	c.2786G>A	c.(2785-2787)GGA>GAA	p.G929E	ZFPM2_uc011lhs.1_Missense_Mutation_p.G660E	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	929					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			TCCCCCAATGGAAACTTATTT	0.423													13	28					0	0	0.000219431	0	0
TG	7038	broad.mit.edu	37	8	134108585	134108585	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:134108585G>A	uc003ytw.2	+	43	7581	c.7540G>A	c.(7540-7542)GAC>AAC	p.D2514N	TG_uc010mdw.2_Missense_Mutation_p.D1273N|TG_uc011ljb.1_Missense_Mutation_p.D883N|TG_uc011ljc.1_Missense_Mutation_p.D647N|SLA_uc003ytz.2_Intron|SLA_uc011lje.1_Intron|SLA_uc011ljf.1_Intron|SLA_uc011ljg.1_Intron|SLA_uc010mea.2_Intron	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2514					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TTCTCAGGACGACGGGCTCAT	0.562													56	85					0	0	0.000781405	0	0
KCNK9	51305	broad.mit.edu	37	8	140630623	140630623	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:140630623C>T	uc003yvf.1	-	2	1067	c.1003G>A	c.(1003-1005)GAG>AAG	p.E335K	KCNK9_uc003yvg.1_Missense_Mutation_p.E335K|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	335	Cytoplasmic (Potential).					integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			GAGATCTCCTCGATCTTGTAA	0.552													25	47					0	0	0.000878237	0	0
EPPK1	83481	broad.mit.edu	37	8	144943357	144943357	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:144943357G>A	uc003zaa.1	-	1	4078	c.4065C>T	c.(4063-4065)CTC>CTT	p.L1355L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1355	Plectin 24.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCACCTGCAGGAGGGGCAAGC	0.687													9	9					0	0	0.000274275	0	0
CPSF1	29894	broad.mit.edu	37	8	145622104	145622105	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr8:145622104_145622105GG>AA	uc003zcj.2	-	24	2707_2708	c.2632_2633CC>TT	c.(2632-2634)CCC>TTC	p.P878F		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	878					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			AGAGTCGTGGGGGAAGGCCTCG	0.579													7	18					0	0	6.4e-05	0	0
FRMPD1	22844	broad.mit.edu	37	9	37719095	37719095	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:37719095G>A	uc004aag.1	+	6	482	c.438G>A	c.(436-438)GAG>GAA	p.E146E	FRMPD1_uc004aah.1_Silent_p.E146E|FRMPD1_uc011lqm.1_5'UTR|FRMPD1_uc011lqn.1_Silent_p.E15E	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	146						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		TCCTGACCGAGGAGAAGAGAG	0.463													16	15					0	0	0.00074312	0	0
FRMPD1	22844	broad.mit.edu	37	9	37740765	37740766	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:37740765_37740766CC>TT	uc004aag.1	+	15	2284_2285	c.2240_2241CC>TT	c.(2239-2241)CCC>CTT	p.P747L	FRMPD1_uc004aah.1_Missense_Mutation_p.P747L|FRMPD1_uc011lqm.1_Missense_Mutation_p.P569L|FRMPD1_uc011lqn.1_Missense_Mutation_p.P616L	NM_014907	NP_055722	Q5SYB0	FRPD1_HUMAN	FERM and PDZ domain containing 1	747						cytoskeleton|cytosol|plasma membrane				ovary(4)|central_nervous_system(2)|skin(2)|breast(1)	9				GBM - Glioblastoma multiforme(29;0.00655)		GAGGCCCAGCCCAGTTCCATGC	0.639													5	6					0	0	6.4e-05	0	0
Unknown	0	broad.mit.edu	37	9	69440300	69440300	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:69440300C>T	uc010mnx.1	+	3	553	c.384C>T	c.(382-384)ATC>ATT	p.I128I		NM_001098806	NP_001092276			coiled-coil domain containing 29																		TAGAAGAAATCCATTTACAGG	0.279													16	19					0	0	0.00152264	0	0
VPS13A	23230	broad.mit.edu	37	9	79843091	79843091	+	Silent	SNP	A	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:79843091A>G	uc004akr.2	+	17	1766	c.1506A>G	c.(1504-1506)AGA>AGG	p.R502R	VPS13A_uc004akp.3_Silent_p.R502R|VPS13A_uc004akq.3_Silent_p.R502R|VPS13A_uc004aks.2_Silent_p.R502R	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	502					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						TTGTTCTAAGAGAAAATCATC	0.289													8	15					0	0	0.000673444	0	0
ZNF169	169841	broad.mit.edu	37	9	97062697	97062698	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:97062697_97062698GG>AA	uc004aum.1	+	5	962_963	c.857_858GG>AA	c.(856-858)GGG>GAA	p.G286E		NM_194320	NP_919301	Q14929	ZN169_HUMAN	zinc finger protein 169	286						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Acute lymphoblastic leukemia(62;0.136)				AAGCACTCGGGGGAGAAGCCGT	0.559													23	25					0	0	6.4e-05	0	0
CYLC2	1539	broad.mit.edu	37	9	105767612	105767612	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:105767612A>T	uc004bbs.2	+	5	769	c.699A>T	c.(697-699)GAA>GAT	p.E233D		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	233	3 X approximate tandem repeats.|31 X 3 AA repeats of K-K-X.|3.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				CAGCCATAGAATTACAAGCTG	0.388													16	20					0	0	0.000422831	0	0
TMEM38B	55151	broad.mit.edu	37	9	108536291	108536291	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:108536291C>T	uc004bcu.1	+	6	923	c.806C>T	c.(805-807)TCA>TTA	p.S269L	TMEM38B_uc010mtn.1_3'UTR	NM_018112	NP_060582	Q9NVV0	TM38B_HUMAN	transmembrane protein 38B	269	Cytoplasmic (Potential).					integral to membrane|nuclear membrane|sarcoplasmic reticulum membrane	potassium channel activity			ovary(1)|skin(1)	2						GGCGTTGGGTCATTGGCCTCA	0.408													37	24					0	0	0.000953801	0	0
OR1L6	392390	broad.mit.edu	37	9	125512978	125512978	+	Silent	SNP	C	G	G			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:125512978C>G	uc011lzc.1	+	1	960	c.960C>G	c.(958-960)CCC>CCG	p.P320P		NM_001004453	NP_001004453	Q8NGR2	OR1L6_HUMAN	olfactory receptor, family 1, subfamily L,	320	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TAGTGACACCCATGCTGAACC	0.418													3	13					0	0	0.00024832	0	0
PPP6C	5537	broad.mit.edu	37	9	127912094	127912094	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:127912094G>A	uc004bpg.3	-	7	997	c.776C>T	c.(775-777)CCT>CTT	p.P259L	PPP6C_uc010mwv.2_Missense_Mutation_p.P296L|PPP6C_uc010mww.2_Missense_Mutation_p.P237L|PPP6C_uc011lzr.1_Missense_Mutation_p.P112L	NM_002721	NP_002712	O00743	PPP6_HUMAN	protein phosphatase 6, catalytic subunit isoform	259					G1/S transition of mitotic cell cycle|protein dephosphorylation	cytosol	metal ion binding|protein binding|protein serine/threonine phosphatase activity			ovary(1)|skin(1)	2						GCAGTAATTAGGAGCAGACCA	0.388													24	16					0	0	0.00047179	0	0
GAPVD1	26130	broad.mit.edu	37	9	128094815	128094815	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:128094815C>T	uc010mwx.2	+	15	2661	c.2335C>T	c.(2335-2337)CCC>TCC	p.P779S	GAPVD1_uc011lzs.1_Missense_Mutation_p.P779S|GAPVD1_uc004bpp.2_Missense_Mutation_p.P779S|GAPVD1_uc004bpq.2_Missense_Mutation_p.P779S|GAPVD1_uc004bpr.2_Missense_Mutation_p.P758S|GAPVD1_uc004bps.2_Missense_Mutation_p.P779S|GAPVD1_uc010mwy.1_Missense_Mutation_p.P638S	NM_015635	NP_056450	Q14C86	GAPD1_HUMAN	GTPase activating protein and VPS9 domains 1	779					endocytosis|regulation of protein transport|regulation of small GTPase mediated signal transduction|signal transduction	cytosol|endosome|membrane	GTPase activating protein binding|GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						TGAGGATATTCCCAATAAGAT	0.358													43	36					0	0	0.000589545	0	0
FAM129B	64855	broad.mit.edu	37	9	130279240	130279240	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:130279240A>C	uc004brh.2	-	8	1071	c.869T>G	c.(868-870)GTG>GGG	p.V290G	FAM129B_uc004bri.2_Missense_Mutation_p.V277G|FAM129B_uc004brj.3_Missense_Mutation_p.V290G	NM_022833	NP_073744	Q96TA1	NIBL1_HUMAN	hypothetical protein LOC64855 isoform 1	290							protein binding				0						CTTGGACAGCACCTCCTCGAA	0.607													64	49					0	0	0.000781405	0	0
CACNA1B	774	broad.mit.edu	37	9	140941478	140941478	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr9:140941478G>A	uc004cog.2	+	22	3681	c.3536G>A	c.(3535-3537)AGG>AAG	p.R1179K	CACNA1B_uc011mfd.1_Missense_Mutation_p.R709K|CACNA1B_uc004coi.2_Missense_Mutation_p.R389K	NM_000718	NP_000709	Q00975	CAC1B_HUMAN	calcium channel, voltage-dependent, N type,	1179	Extracellular (Potential).|III.				membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	ATP binding|protein C-terminus binding|voltage-gated calcium channel activity			breast(3)|large_intestine(2)|ovary(1)	6	all_cancers(76;0.166)			OV - Ovarian serous cystadenocarcinoma(145;1.16e-05)|Epithelial(140;0.000476)	Amlodipine(DB00381)|Gabapentin(DB00996)	GACTCGCCCAGGAACAACGTG	0.672													4	1					0	0	0.00024832	0	0
STS	412	broad.mit.edu	37	X	7243496	7243496	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:7243496C>T	uc004cry.3	+	8	1458	c.1213C>T	c.(1213-1215)CCT>TCT	p.P405S		NM_000351	NP_000342	P08842	STS_HUMAN	steryl-sulfatase precursor	405	Lumenal.				female pregnancy|steroid catabolic process	endoplasmic reticulum membrane|endosome|Golgi apparatus|integral to membrane|lysosome|microsome|plasma membrane	metal ion binding|steryl-sulfatase activity			central_nervous_system(1)	1		Colorectal(8;0.0136)|Medulloblastoma(8;0.184)			Estrone(DB00655)	GGACATATTTCCTACAGTAGC	0.542									Ichthyosis				23	15					0	0	0.000878237	0	0
MAP7D2	256714	broad.mit.edu	37	X	20062506	20062506	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:20062506G>A	uc004czr.1	-	6	751	c.732C>T	c.(730-732)GCC>GCT	p.A244A	MAP7D2_uc004czq.1_Silent_p.A129A|MAP7D2_uc011mji.1_Silent_p.A192A|MAP7D2_uc010nfo.1_Silent_p.A285A|MAP7D2_uc011mjj.1_Silent_p.A199A	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	244										ovary(2)|breast(1)	3						CTCCTGAAAGGGCTTCTTTCC	0.468													43	17					0	0	0.000781405	0	0
ALG13	79868	broad.mit.edu	37	X	110951568	110951568	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:110951568C>T	uc011msy.1	+	4	731	c.697C>T	c.(697-699)CGA>TGA	p.R233*	ALG13_uc011msw.1_Nonsense_Mutation_p.R155*|ALG13_uc011msx.1_Nonsense_Mutation_p.R129*|ALG13_uc011msz.1_Nonsense_Mutation_p.R155*|ALG13_uc011mta.1_Nonsense_Mutation_p.R129*|ALG13_uc011mtb.1_Nonsense_Mutation_p.R129*			Q9NP73	ALG13_HUMAN	SubName: Full=Asparagine-linked glycosylation 13 homolog (S. cerevisiae);	233	OTU.				dolichol-linked oligosaccharide biosynthetic process|lipid glycosylation|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane	carbohydrate binding|N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity			lung(1)	1						AGGGCTGTTTCGAAAGCTGAC	0.443													63	28					0	0	0.000781405	0	0
HTR2C	3358	broad.mit.edu	37	X	114141364	114141364	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:114141364G>A	uc004epu.1	+	6	1491	c.763G>A	c.(763-765)GAA>AAA	p.E255K	HTR2C_uc010nqc.1_Missense_Mutation_p.E255K|HTR2C_uc004epv.1_Missense_Mutation_p.G223E	NM_000868	NP_000859	P28335	5HT2C_HUMAN	5-hydroxytryptamine (serotonin) receptor 2C	255	Cytoplasmic (By similarity).				cGMP biosynthetic process|ERK1 and ERK2 cascade|feeding behavior|phosphatidylinositol biosynthetic process|release of sequestered calcium ion into cytosol|response to drug|synaptic transmission	cytoplasm|integral to membrane|nucleus|plasma membrane	1-(4-iodo-2,5-dimethoxyphenyl)propan-2-amine binding|drug binding|phosphatidylinositol phospholipase C activity|protein binding|serotonin binding|serotonin receptor activity			ovary(3)	3					Chlorprothixene(DB01239)|Clozapine(DB00363)|Dexfenfluramine(DB01191)|Fenfluramine(DB00574)|Methysergide(DB00247)|Mianserin(DB06148)|Minaprine(DB00805)|Mirtazapine(DB00370)|Olanzapine(DB00334)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Sertindole(DB06144)|Thiethylperazine(DB00372)|Tramadol(DB00193)|Ziprasidone(DB00246)	CCACACCGAGGAACCGCCTGG	0.522													77	28					0	0	0.000781405	0	0
ODZ1	10178	broad.mit.edu	37	X	123514833	123514833	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:123514833C>A	uc004euj.2	-	31	7795	c.7731G>T	c.(7729-7731)AAG>AAT	p.K2577N	ODZ1_uc011muj.1_Missense_Mutation_p.K2583N|ODZ1_uc010nqy.2_Missense_Mutation_p.K2584N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	2577	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						GAGACCCAAGCTTAATGAAGT	0.498													42	16					1.48646e-12	1.2955e-11	0.000509022	1	0
MAGEA12	4111	broad.mit.edu	37	X	151900681	151900681	+	Silent	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:151900681G>A	uc010ntp.2	-	3	474	c.120C>T	c.(118-120)TCC>TCT	p.S40S	MAGEA12_uc004fgb.2_Intron|MAGEA12_uc004fgc.2_Silent_p.S40S|CSAG1_uc004fge.2_5'Flank|CSAG1_uc004fgf.2_5'Flank|CSAG1_uc004fgd.2_5'Flank	NM_005367	NP_005358	P43365	MAGAC_HUMAN	melanoma antigen family A, 12	40	Poly-Ser.									skin(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TAGAGGAGGAGGAGGCAGTCT	0.642													22	5					0	0	0.000295444	0	0
PDZD4	57595	broad.mit.edu	37	X	153069985	153069985	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:153069985G>A	uc004fiz.1	-	8	1383	c.1133C>T	c.(1132-1134)CCC>CTC	p.P378L	PDZD4_uc004fiy.1_Missense_Mutation_p.P303L|PDZD4_uc004fix.2_Missense_Mutation_p.P282L|PDZD4_uc004fja.1_Missense_Mutation_p.P384L|PDZD4_uc011mze.1_Missense_Mutation_p.P269L	NM_032512	NP_115901	Q76G19	PDZD4_HUMAN	PDZ domain containing 4	378						cell cortex				breast(1)	1	all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GGAGGCCCGGGGAAAGAGGAG	0.642													9	3					0	0	0.000673444	0	0
F8	2157	broad.mit.edu	37	X	154159776	154159776	+	Silent	SNP	C	T	T			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:154159776C>T	uc004fmt.2	-	14	2460	c.2289G>A	c.(2287-2289)CAG>CAA	p.Q763Q		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	763	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	GTCTTGAATTCTGGGAGAAGC	0.408													54	27					0	0	0.000781405	0	0
CKAP2	26586	broad.mit.edu	37	13	53048016	53048016	+	Frame_Shift_Del	DEL	T	-	-			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr13:53048016delT	uc001vgv.2	+	8	1799	c.1602delT	c.(1600-1602)AGTfs	p.S534fs	CKAP2_uc001vgu.2_Frame_Shift_Del_p.S533fs|CKAP2_uc010tha.1_Frame_Shift_Del_p.S485fs	NM_001098525	NP_001091995	Q8WWK9	CKAP2_HUMAN	cytoskeleton associated protein 2 isoform 2	534					apoptosis|cell cycle	centrosome|microtubule|spindle pole				ovary(1)|skin(1)	2		Breast(56;0.000207)|Lung NSC(96;0.00212)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.6e-08)		AAGAAGTCAGTATTGAAGATA	0.323													35	42	---	---	---	---					
WWP2	11060	broad.mit.edu	37	16	69973005	69973005	+	Frame_Shift_Del	DEL	G	-	-			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr16:69973005delG	uc002exu.1	+	23	2508	c.2419delG	c.(2419-2421)GGGfs	p.G807fs	WWP2_uc002exv.1_Frame_Shift_Del_p.G807fs|WWP2_uc010vlm.1_Frame_Shift_Del_p.G691fs|WWP2_uc010vln.1_Frame_Shift_Del_p.G425fs|WWP2_uc002exw.1_Frame_Shift_Del_p.G368fs	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	807	HECT.				entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						CCTGCCCGTCGGGGGATTTGC	0.597													2	4	---	---	---	---					
TBC1D17	79735	broad.mit.edu	37	19	50390749	50390750	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr19:50390749_50390750delCT	uc002pqo.2	+	14	1613_1614	c.1461_1462delCT	c.(1459-1464)GGCTCTfs	p.G487fs	TBC1D17_uc010ybg.1_Frame_Shift_Del_p.G454fs|TBC1D17_uc002pqp.2_Frame_Shift_Del_p.G138fs|TBC1D17_uc002pqr.2_Frame_Shift_Del_p.G138fs|TBC1D17_uc002pqs.2_RNA|IL4I1_uc002pqv.1_3'UTR|IL4I1_uc010eno.1_3'UTR|IL4I1_uc002pqw.1_3'UTR	NM_024682	NP_078958	Q9HA65	TBC17_HUMAN	TBC1 domain family, member 17	487_488	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0		all_lung(116;0.000338)|Lung NSC(112;0.000446)|all_neural(266;0.107)|Ovarian(192;0.231)		GBM - Glioblastoma multiforme(134;0.0116)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		AGGACTCCGGCTCTCTCTGCTT	0.594													9	18	---	---	---	---					
SMAP1	60682	broad.mit.edu	37	6	71508370	71508370	+	Frame_Shift_Del	DEL	A	-	-			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chr6:71508370delA	uc003pfr.2	+	6	754	c.506delA	c.(505-507)GAAfs	p.E169fs	SMAP1_uc011dxy.1_RNA|SMAP1_uc003pfs.2_Frame_Shift_Del_p.E142fs|SMAP1_uc010kao.2_Frame_Shift_Del_p.E142fs|SMAP1_uc010kap.2_Frame_Shift_Del_p.E159fs	NM_001044305	NP_001037770	Q8IYB5	SMAP1_HUMAN	stromal membrane-associated GTPase-activating	169					regulation of ARF GTPase activity	plasma membrane	ARF GTPase activator activity|zinc ion binding				0						aaagaaaaggaaaaaaaaaag	0.234													3	6	---	---	---	---					
NUDT11	55190	broad.mit.edu	37	X	51239296	51239309	+	Translation_Start_Site	DEL	TCCTCGAGGCAGCC	-	-			TCGA-DA-A1I1-06A-12D-A196-08	TCGA-DA-A1I1-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	50a13ad0-be19-4cd6-8081-ec07e81a25d5	b01288ef-1511-49c4-89f3-8c2e983d5b52	g.chrX:51239296_51239309delTCCTCGAGGCAGCC	uc010njt.2	-	1						NM_018159	NP_060629	Q96G61	NUD11_HUMAN	nudix-type motif 11							cytoplasm	diphosphoinositol-polyphosphate diphosphatase activity|metal ion binding				0	Ovarian(276;0.236)					TTGCACTTCATCCTCGAGGCAGCCTCCTCGAGGC	0.584										HNSCC(48;0.14)			3	6	---	---	---	---					
