Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MAD2L2	10459	broad.mit.edu	37	1	11736105	11736106	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:11736105_11736106GG>AA	uc001asp.2	-	6	612_613	c.424_425CC>TT	c.(424-426)CCA>TTA	p.P142L	MAD2L2_uc009vnc.2_Missense_Mutation_p.P142L|MAD2L2_uc001asq.3_Missense_Mutation_p.P142L	NM_006341	NP_006332	Q9UI95	MD2L2_HUMAN	MAD2 homolog	142	Mediates interaction with REV1 and REV3L and homodimerization.|HORMA.				cell division|DNA damage response, signal transduction resulting in transcription|double-strand break repair|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of mitotic anaphase-promoting complex activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription, DNA-dependent|regulation of cell growth|transcription, DNA-dependent	cytoplasm|nucleoplasm|spindle|zeta DNA polymerase complex	JUN kinase binding				0	Ovarian(185;0.249)	Lung NSC(185;4.15e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.04e-06)|COAD - Colon adenocarcinoma(227;0.000245)|BRCA - Breast invasive adenocarcinoma(304;0.000295)|Kidney(185;0.000733)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		GGACACACCTGGGGGGTTGTGG	0.574000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					13	40					0	0	0.004672	0	0
CLCN6	1185	broad.mit.edu	37	1	11896130	11896130	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:11896130C>T	uc001ate.3	+	18	2013	c.1900C>T	c.(1900-1902)CCG>TCG	p.P634S	CLCN6_uc010oat.1_Missense_Mutation_p.P350S|CLCN6_uc010oau.1_Missense_Mutation_p.P612S	NM_001286	NP_001277	P51797	CLCN6_HUMAN	chloride channel 6 isoform ClC-6a	634	Cytoplasmic (By similarity).|CBS 1.				cell volume homeostasis|signal transduction	endosome membrane|integral to membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity				0	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000816)|KIRC - Kidney renal clear cell carcinoma(229;0.00268)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		CCATGCCTTCCCGGTGGTCAC	0.557000													7	22					0	0	0.001984	0	0
NBPF1	55672	broad.mit.edu	37	1	16902870	16902870	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:16902870C>T	uc009vos.1	-	19	2899	c.2011G>A	c.(2011-2013)GCC>ACC	p.A671T	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Missense_Mutation_p.A129T|NBPF1_uc010oce.1_Missense_Mutation_p.A400T	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	671						cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GTGAGGAGGGCCTGGAGATGC	0.557000													43	549					0	0	0.003610	0	0
EPHB2	2048	broad.mit.edu	37	1	23111292	23111292	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:23111292C>T	uc009vqj.1	+	3	679	c.534C>T	c.(532-534)TTC>TTT	p.F178F	EPHB2_uc001bge.2_Silent_p.F178F|EPHB2_uc001bgf.2_Silent_p.F178F|EPHB2_uc010odu.1_Silent_p.F178F	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	178	Extracellular (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		ACCTGGCCTTCCAGGACTATG	0.612000									Hereditary_Prostate_Cancer				7	28					0	0	0.001984	0	0
KDM1A	23028	broad.mit.edu	37	1	23384007	23384007	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:23384007C>T	uc001bgi.2	+	7	1110	c.961C>T	c.(961-963)CGC>TGC	p.R321C	KDM1A_uc001bgj.2_Missense_Mutation_p.R341C	NM_015013	NP_055828	O60341	KDM1A_HUMAN	lysine-specific histone demethylase 1 isoform b	321	Demethylase activity.				blood coagulation|muscle cell development|negative regulation of apoptosis|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of protein binding|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nuclear chromatin	androgen receptor binding|chromatin binding|enzyme binding|flavin adenine dinucleotide binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-K9 specific)|ligand-dependent nuclear receptor transcription coactivator activity|MyoD binding|oxidoreductase activity|p53 binding|transcription regulatory region DNA binding			ovary(1)|lung(1)	2						TGCCACATTTCGCAAAGGAAA	0.413000													32	64					0	0	0.004289	0	0
AHDC1	27245	broad.mit.edu	37	1	27875200	27875201	+	Silent	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:27875200_27875201GG>AA	uc009vsy.2	-	6	4395_4396	c.3426_3427CC>TT	c.(3424-3429)ATCCTG>ATTTTG	p.1142_1143IL>IL	AHDC1_uc009vsz.1_Silent_p.1142_1143IL>IL	NM_001029882	NP_001025053	Q5TGY3	AHDC1_HUMAN	AT hook, DNA binding motif, containing 1	1142_1143							DNA binding			central_nervous_system(1)	1		all_lung(284;1.06e-05)|Lung NSC(340;1.86e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0434)|OV - Ovarian serous cystadenocarcinoma(117;8.48e-25)|Colorectal(126;9.17e-09)|COAD - Colon adenocarcinoma(152;1.84e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00192)|BRCA - Breast invasive adenocarcinoma(304;0.00259)|STAD - Stomach adenocarcinoma(196;0.00311)|READ - Rectum adenocarcinoma(331;0.0291)		GAGATGTCCAGGATCACGTTGG	0.574000													18	67					0	0	0.004672	0	0
FGR	2268	broad.mit.edu	37	1	27942047	27942047	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:27942047C>T	uc001boj.2	-	7	1062	c.916G>A	c.(916-918)GAG>AAG	p.E306K	FGR_uc001boi.2_Missense_Mutation_p.E9K|FGR_uc001bok.2_Missense_Mutation_p.E306K|FGR_uc001bol.2_Missense_Mutation_p.E306K|FGR_uc001bom.2_Missense_Mutation_p.E306K	NM_005248	NP_005239	P09769	FGR_HUMAN	proto-oncogene tyrosine-protein kinase FGR	306	Protein kinase.				platelet activation|response to virus	cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity			skin(2)	2		all_lung(284;2.05e-05)|Colorectal(325;3.46e-05)|Lung NSC(340;3.67e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.25e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		ACCTGCGCCTCCTCCAGGAAG	0.622000													6	42					0	0	0.001168	0	0
CSMD2	114784	broad.mit.edu	37	1	34285417	34285417	+	Silent	SNP	G	A	A	rs146766790		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:34285417G>A	uc001bxn.1	-	9	1130	c.1101C>T	c.(1099-1101)TTC>TTT	p.F367F	CSMD2_uc001bxm.1_Silent_p.F407F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	367	Extracellular (Potential).|Sushi 2.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CGTTGCAGGTGAACTGGACGC	0.592000													13	33					0	0	0.002450	0	0
CCDC30	728621	broad.mit.edu	37	1	43119491	43119491	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:43119491T>C	uc009vwk.1	+	16	2254	c.2144T>C	c.(2143-2145)TTT>TCT	p.F715S	CCDC30_uc001chm.2_Missense_Mutation_p.F413S|CCDC30_uc001chn.2_Missense_Mutation_p.F504S	NM_001080850	NP_001074319	Q5VVM6	CCD30_HUMAN	coiled-coil domain containing 30	715											0						TTTCTTAGTTTTTCAGGAAAA	0.383000													7	28					0	0	0.003080	0	0
NASP	4678	broad.mit.edu	37	1	46073706	46073706	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:46073706C>T	uc001coi.1	+	6	1225	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	NASP_uc010olq.1_Missense_Mutation_p.P338S|NASP_uc001coh.1_Missense_Mutation_p.P377S|NASP_uc001coj.1_Intron|NASP_uc010olr.1_Missense_Mutation_p.P311S|NASP_uc001cok.1_Missense_Mutation_p.P258S	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	375	Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					TCCAGTTCTCCCTAAGGATGG	0.502000													48	149					0	0	0.003610	0	0
ZCCHC11	23318	broad.mit.edu	37	1	52891101	52891101	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:52891101G>A	uc001ctx.2	-	29	5021	c.4787C>T	c.(4786-4788)TCG>TTG	p.S1596L	ZCCHC11_uc001cty.2_Missense_Mutation_p.S1597L|ZCCHC11_uc001ctz.2_Missense_Mutation_p.S1592L	NM_015269	NP_056084	Q5TAX3	TUT4_HUMAN	zinc finger, CCHC domain containing 11 isoform	1596	Pro-rich.				miRNA catabolic process|pre-miRNA processing|RNA 3'-end processing|stem cell maintenance	cytoplasm|nucleolus	nucleic acid binding|protein binding|protein binding|RNA uridylyltransferase activity|zinc ion binding			ovary(2)|skin(1)	3						ATAAGGCCACGAAGCTGGGAC	0.488000													17	54					0	0	0.004007	0	0
TMEM48	55706	broad.mit.edu	37	1	54238032	54238032	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:54238032C>T	uc001cvs.2	-	17	2172	c.1931G>A	c.(1930-1932)CGA>CAA	p.R644Q	TMEM48_uc010onu.1_Missense_Mutation_p.R604Q|TMEM48_uc001cvt.2_Missense_Mutation_p.R521Q|TMEM48_uc009vzk.2_RNA|TMEM48_uc010onv.1_Missense_Mutation_p.R309Q	NM_018087	NP_060557	Q9BTX1	NDC1_HUMAN	transmembrane protein 48	644	Cytoplasmic (Potential).				mRNA transport|nuclear pore complex assembly|nuclear pore distribution|protein transport|transmembrane transport	nuclear membrane|nuclear pore	protein binding|structural constituent of nuclear pore			ovary(1)|pancreas(1)	2						AGTAGTTATTCGATAGATGGC	0.393000													36	84					0	0	0.004878	0	0
C1orf175	374977	broad.mit.edu	37	1	55148375	55148375	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:55148375T>G	uc010ooe.1	+	14	2752	c.2428T>G	c.(2428-2430)TGT>GGT	p.C810G	C1orf175_uc001cxq.2_RNA|C1orf175_uc010ooc.1_Missense_Mutation_p.C378G|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Missense_Mutation_p.C328G|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.C810G|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_Intron|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Missense_Mutation_p.C12G	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	810						integral to membrane	binding				0						TAAGCCCAGCTGTGATGTCCG	0.612000													20	55					0	0	0.007413	0	0
PCSK9	255738	broad.mit.edu	37	1	55518345	55518345	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:55518345G>A	uc001cyf.1	+	5	971	c.680G>A	c.(679-681)GGC>GAC	p.G227D	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_RNA	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	227	Peptidase S8.				cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						GACAGTCATGGCACCCACCTG	0.632000													94	221					0	0	0.003610	0	0
SLC44A5	204962	broad.mit.edu	37	1	75685026	75685026	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:75685026G>A	uc001dgu.2	-	16	1326	c.1182C>T	c.(1180-1182)TTC>TTT	p.F394F	SLC44A5_uc001dgt.2_Silent_p.F394F|SLC44A5_uc001dgs.2_Silent_p.F352F|SLC44A5_uc001dgr.2_Silent_p.F352F|SLC44A5_uc010oqz.1_Silent_p.F433F|SLC44A5_uc010ora.1_Silent_p.F388F|SLC44A5_uc010orb.1_Silent_p.F264F	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	394	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						ATGTCGCCAAGAAACTGAATA	0.383000													11	29					0	0	0.008291	0	0
ADAM30	11085	broad.mit.edu	37	1	120437405	120437405	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:120437405G>A	uc001eij.2	-	1	1709	c.1555C>T	c.(1555-1557)CCT>TCT	p.P519S		NM_021794	NP_068566	Q9UKF2	ADA30_HUMAN	ADAM metallopeptidase domain 30 preproprotein	519	Cys-rich.|Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)|lung(1)	3	all_cancers(5;7.07e-10)|all_epithelial(5;1.62e-10)|all_neural(166;0.153)|Breast(55;0.234)	all_lung(203;1.55e-06)|Lung NSC(69;1.04e-05)|all_epithelial(167;0.00138)		Lung(183;0.0204)|LUSC - Lung squamous cell carcinoma(189;0.117)		CACTCACTAGGAGCCTCCATG	0.418000													167	424					0	0	0.003610	0	0
PRPF3	9129	broad.mit.edu	37	1	150297351	150297351	+	Splice_Site	SNP	A	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:150297351A>G	uc001eum.3	+	2	115	c.-47_splice	c.e2-2		PRPF3_uc009wlo.2_Splice_Site|PRPF3_uc009wlp.2_Splice_Site|PRPF3_uc010pca.1_Intron|PRPF3_uc010pcb.1_Splice_Site	NM_004698	NP_004689	O43395	PRPF3_HUMAN	PRP3 pre-mRNA processing factor 3 homolog						nuclear mRNA splicing, via spliceosome	Cajal body|cytoplasm|nuclear speck|spliceosomal complex	protein binding			ovary(1)	1	Lung NSC(24;5.57e-29)|Breast(34;0.000844)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.0997)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)	Colorectal(1306;0.0149)		TTTTTTTTTTAGGTGTAGTAT	0.269000													4	54					0	0	0.002450	0	0
ADAMTSL4	54507	broad.mit.edu	37	1	150532255	150532255	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:150532255G>A	uc001eux.2	+	18	3198	c.2962G>A	c.(2962-2964)GGG>AGG	p.G988R	ADAMTSL4_uc009wlw.2_Missense_Mutation_p.G1011R|ADAMTSL4_uc010pcg.1_Missense_Mutation_p.G949R|ADAMTSL4_uc009wlx.2_Missense_Mutation_p.G151R	NM_019032	NP_061905	Q6UY14	ATL4_HUMAN	thrombospondin repeat containing 1 isoform 1	988	TSP type-1 6.				apoptosis|positive regulation of apoptosis		metalloendopeptidase activity|protease binding			ovary(1)|skin(1)	2	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;3.18e-23)|all cancers(9;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(6;1.13e-14)|BRCA - Breast invasive adenocarcinoma(12;0.000503)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)			CTCCTGCCAAGGGGGAACGCA	0.637000											OREG0013787	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	185					0	0	0.001786	0	0
FLG	2312	broad.mit.edu	37	1	152276755	152276755	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:152276755C>T	uc001ezu.1	-	3	10643	c.10607G>A	c.(10606-10608)GGA>GAA	p.G3536E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3536	Ser-rich.|Filaggrin 21.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AACACTGGATCCCTGGTTCCT	0.577000									Ichthyosis				152	166					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152282094	152282095	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:152282094_152282095CC>TT	uc001ezu.1	-	3	5303_5304	c.5267_5268GG>AA	c.(5266-5268)GGG>GAA	p.G1756E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1756	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGACCTTTCCCCTGACTGGCC	0.599000									Ichthyosis				192	183					0	0	0.004672	0	0
SPRR3	6707	broad.mit.edu	37	1	152975920	152975920	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:152975920C>T	uc001fax.3	+	3	574	c.424C>T	c.(424-426)CCT>TCT	p.P142S	SPRR3_uc001faz.3_Missense_Mutation_p.P142S|SPRR3_uc001fay.2_Missense_Mutation_p.P134S	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	142	13.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CACCAAAGTTCCTGTGCCAGG	0.532000													25	20					0	0	0.002780	0	0
UBE2Q1	55585	broad.mit.edu	37	1	154524607	154524607	+	Nonsense_Mutation	SNP	C	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:154524607C>A	uc001fff.1	-	8	1019	c.928G>T	c.(928-930)GAA>TAA	p.E310*		NM_017582	NP_060052	Q7Z7E8	UB2Q1_HUMAN	ubiquitin-conjugating enzyme E2Q	310							ATP binding|protein binding|ubiquitin-protein ligase activity				0	all_lung(78;1.72e-29)|Lung NSC(65;2.96e-27)|Hepatocellular(266;0.0877)|all_hematologic(923;0.088)		LUSC - Lung squamous cell carcinoma(543;0.185)			TCGGCTCCTTCTTTCTCTTTG	0.498000													24	120					1.04121e-07	1.15004e-07	0.005443	1	0
FDPS	2224	broad.mit.edu	37	1	155290374	155290374	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:155290374C>T	uc001fkc.2	+	11	1453	c.1234C>T	c.(1234-1236)CGC>TGC	p.R412C	RAG1AP1_uc010pey.1_Intron|FDPS_uc001fkd.2_Missense_Mutation_p.R346C|FDPS_uc001fke.2_Missense_Mutation_p.R412C|FDPS_uc001fkf.2_Missense_Mutation_p.R346C|C1orf104_uc001fkh.1_Intron|C1orf104_uc001fki.2_3'UTR|RUSC1_uc001fkj.2_5'Flank|RUSC1_uc001fkk.2_5'Flank|RUSC1_uc009wqn.1_5'Flank|RUSC1_uc009wqo.1_5'Flank	NM_002004	NP_001995	P14324	FPPS_HUMAN	farnesyl diphosphate synthase isoform a	412					cholesterol biosynthetic process|interspecies interaction between organisms|isoprenoid biosynthetic process	cytosol|nucleus	dimethylallyltranstransferase activity|geranyltranstransferase activity|metal ion binding				0	Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;2.03e-10)|all cancers(21;5.23e-10)|BRCA - Breast invasive adenocarcinoma(34;0.000549)|LUSC - Lung squamous cell carcinoma(543;0.127)		Alendronate(DB00630)|Ibandronate(DB00710)|Pamidronate(DB00282)|Risedronate(DB00884)|Zoledronate(DB00399)	GGGGCTTGCGCGCAAAATCTA	0.498000													39	28					0	0	0.002222	0	0
OR10K1	391109	broad.mit.edu	37	1	158435597	158435597	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:158435597G>A	uc010pij.1	+	1	246	c.246G>A	c.(244-246)CTG>CTA	p.L82L		NM_001004473	NP_001004473	Q8NGX5	O10K1_HUMAN	olfactory receptor, family 10, subfamily K,	82	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CCAAGATGCTGGTTGACCTGC	0.483000													155	132					0	0	0.003610	0	0
OR10J1	26476	broad.mit.edu	37	1	159410389	159410389	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:159410389G>A	uc010piv.1	+	1	841	c.841G>A	c.(841-843)GAC>AAC	p.D281N	uc001fts.3_Intron	NM_012351	NP_036483	P30954	O10J1_HUMAN	olfactory receptor, family 10, subfamily J,	281	Extracellular (Potential).				sensory perception of smell|single fertilization	integral to plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0429)					CAGAGAACATGACCAGCTGAT	0.517000													22	121					0	0	0.002299	0	0
GPR161	23432	broad.mit.edu	37	1	168066237	168066237	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:168066237A>G	uc001gfc.2	-	5	922	c.608T>C	c.(607-609)GTC>GCC	p.V203A	GPR161_uc001gfb.2_Missense_Mutation_p.V71A|GPR161_uc010pll.1_Missense_Mutation_p.V113A|GPR161_uc010plm.1_Missense_Mutation_p.V89A|GPR161_uc009wvo.2_Missense_Mutation_p.V220A|GPR161_uc001gfd.2_Missense_Mutation_p.V203A|GPR161_uc010pln.1_Missense_Mutation_p.V223A|GPR161_uc001gfe.1_Missense_Mutation_p.V203A	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	203	Helical; Name=5; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					CACCAGCATGACCAGAAAGGG	0.587000													3	54					0	0	0.004672	0	0
SELE	6401	broad.mit.edu	37	1	169698340	169698340	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:169698340G>A	uc001ggm.3	-	7	1234	c.1077C>T	c.(1075-1077)ATC>ATT	p.I359I	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	359	Extracellular (Potential).|Sushi 3.				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					CACAAACTGGGATTTGCTGTG	0.438000													46	41					0	0	0.003610	0	0
SLC9A11	284525	broad.mit.edu	37	1	173517593	173517593	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:173517593C>T	uc001giz.2	-	12	1819	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	SLC9A11_uc009wwe.2_Missense_Mutation_p.E24K|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	466					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						AAAATTTTTTCTGTTTTAAAT	0.348000													34	31					0	0	0.002836	0	0
RGL1	23179	broad.mit.edu	37	1	183775610	183775610	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:183775610A>T	uc001gqo.2	+	2	286	c.129A>T	c.(127-129)AGA>AGT	p.R43S	RGL1_uc010pof.1_Intron|RGL1_uc001gqm.2_Missense_Mutation_p.R78S|RGL1_uc010pog.1_Intron|RGL1_uc010poh.1_Intron|RGL1_uc010poi.1_Missense_Mutation_p.R43S	NM_015149	NP_055964	Q9NZL6	RGL1_HUMAN	ral guanine nucleotide dissociation	43					cellular lipid metabolic process|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	protein binding|Ral guanyl-nucleotide exchange factor activity			breast(5)|ovary(4)|lung(2)	11						AAGGAGCAAGATGGCTAGGGG	0.453000													23	103					0	0	0.001882	0	0
C1orf27	54953	broad.mit.edu	37	1	186375259	186375259	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:186375259C>T	uc001grw.2	+	13	1281	c.1045C>T	c.(1045-1047)CCC>TCC	p.P349S	C1orf27_uc010poq.1_Missense_Mutation_p.P326S|C1orf27_uc010por.1_Missense_Mutation_p.P317S	NM_017847	NP_060317	Q5SWX8	ODR4_HUMAN	odorant response abnormal 4 isoform 1	349						integral to membrane	oxidoreductase activity|zinc ion binding			ovary(1)	1						AGTCTTTGTTCCCCTTCCTGG	0.373000													74	61					0	0	0.003610	0	0
RGS18	64407	broad.mit.edu	37	1	192153683	192153683	+	Nonstop_Mutation	SNP	A	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:192153683A>T	uc001gsg.2	+	5	883	c.707A>T	c.(706-708)TAA>TTA	p.*236L		NM_130782	NP_570138	Q9NS28	RGS18_HUMAN	regulator of G-protein signalling 18	236					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)	3						ATTTGGTTATAAAGAAAATTG	0.348000													6	47					0	0	0.001168	0	0
KIF21B	23046	broad.mit.edu	37	1	200960261	200960261	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:200960261C>T	uc001gvs.1	-	18	2788	c.2471G>A	c.(2470-2472)CGC>CAC	p.R824H	KIF21B_uc001gvr.1_Missense_Mutation_p.R824H|KIF21B_uc009wzl.1_Missense_Mutation_p.R824H|KIF21B_uc010ppn.1_Missense_Mutation_p.R824H	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	824	Potential.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CTTGGCCAGGCGCCTCAGTGC	0.657000													12	49					0	0	0.000978	0	0
PPFIA4	8497	broad.mit.edu	37	1	203040846	203040846	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:203040846C>T	uc001gyz.2	+	15	2426	c.1833C>T	c.(1831-1833)TTC>TTT	p.F611F	PPFIA4_uc009xaj.2_Silent_p.F1242F|PPFIA4_uc010pqf.1_Silent_p.F824F|PPFIA4_uc001gza.2_Silent_p.F602F|PPFIA4_uc001gzb.1_Silent_p.F297F|PPFIA4_uc001gzc.1_Silent_p.F153F	NM_015053	NP_055868	O75335	LIPA4_HUMAN	protein tyrosine phosphatase, receptor type, f	611	SAM 3.				cell communication	cell surface|cytoplasm	protein binding			ovary(4)|skin(1)	5						AAAGAGAGTTCAATAACCTGT	0.498000													12	14					0	0	0.002450	0	0
MFSD4	148808	broad.mit.edu	37	1	205553197	205553197	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:205553197C>T	uc001hcv.3	+	4	891	c.805C>T	c.(805-807)CCT>TCT	p.P269S	MFSD4_uc010prk.1_Missense_Mutation_p.P182S|MFSD4_uc010prl.1_RNA|MFSD4_uc010prm.1_Missense_Mutation_p.P214S	NM_181644	NP_857595	Q8N468	MFSD4_HUMAN	major facilitator superfamily domain containing	269					transmembrane transport	integral to membrane				skin(2)|central_nervous_system(1)	3	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			GGAGACACAGCCTCCTGAGAA	0.577000													4	118					0	0	0.000248	0	0
PTPN14	5784	broad.mit.edu	37	1	214556992	214556993	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:214556992_214556993GG>AA	uc001hkk.1	-	13	2476_2477	c.2205_2206CC>TT	c.(2203-2208)GCCCAG>GCTTAG	p.Q736*	PTPN14_uc010pty.1_Nonsense_Mutation_p.Q637*	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	736					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GCCTGCAGCTGGGCACTGTACT	0.634000													12	91					0	0	0.004672	0	0
OBSCN	84033	broad.mit.edu	37	1	228467077	228467077	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:228467077C>T	uc009xez.1	+	27	7372	c.7328C>T	c.(7327-7329)TCC>TTC	p.S2443F	OBSCN_uc001hsn.2_Missense_Mutation_p.S2443F|OBSCN_uc001hsp.1_Missense_Mutation_p.S142F|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2443					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				CGGACCTGCTCCACCATGACC	0.697000													27	101					0	0	0.008361	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367362	234367362	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:234367362G>A	uc001hwa.1	+	2	504	c.276G>A	c.(274-276)AGG>AGA	p.R92R	SLC35F3_uc001hvy.1_Silent_p.R161R	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	92					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			TGACCTTCAGGAAGTTCGACG	0.602000													42	215					0	0	0.003610	0	0
MAP1LC3C	440738	broad.mit.edu	37	1	242159558	242159558	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:242159558C>T	uc001hzk.2	-	4	426	c.351G>A	c.(349-351)ATG>ATA	p.M117I		NM_001004343	NP_001004343	Q9BXW4	MLP3C_HUMAN	microtubule-associated protein 1 light chain 3	117					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|endomembrane system|microtubule	protein binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(106;0.0188)			AGGCGTAGGTCATGTACACGA	0.552000													29	131					0	0	0.002096	0	0
PLD5	200150	broad.mit.edu	37	1	242253348	242253348	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr1:242253348C>T	uc001hzn.1	-	10	1546	c.1419G>A	c.(1417-1419)CAG>CAA	p.Q473Q	PLD5_uc001hzl.3_Silent_p.Q411Q|PLD5_uc001hzm.3_Silent_p.Q263Q|PLD5_uc001hzo.1_Silent_p.Q381Q			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	473						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			TCACATCTGCCTGGTTGATAA	0.413000													28	134					0	0	0.004656	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37508103	37508103	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:37508103G>A	uc001iza.1	+	34	3394	c.3295G>A	c.(3295-3297)GAA>AAA	p.E1099K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	1155	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						ACTGAAAGAGGAATCATTAAC	0.338000													52	103					0	0	0.003610	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													3	39					0	0	0.004672	0	0
PCDH15	65217	broad.mit.edu	37	10	55626419	55626419	+	Missense_Mutation	SNP	C	T	T	rs143149062		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:55626419C>T	uc001jju.1	-	27	4095	c.3700G>A	c.(3700-3702)GGC>AGC	p.G1234S	PCDH15_uc010qhq.1_Missense_Mutation_p.G1239S|PCDH15_uc010qhr.1_Missense_Mutation_p.G1234S|PCDH15_uc010qhs.1_Missense_Mutation_p.G1246S|PCDH15_uc010qht.1_Missense_Mutation_p.G1241S|PCDH15_uc010qhu.1_Missense_Mutation_p.G1234S|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.G1234S|PCDH15_uc010qhw.1_Missense_Mutation_p.G1197S|PCDH15_uc010qhx.1_Missense_Mutation_p.G1163S|PCDH15_uc010qhy.1_Missense_Mutation_p.G1239S|PCDH15_uc010qhz.1_Missense_Mutation_p.G1234S|PCDH15_uc010qia.1_Missense_Mutation_p.G1212S|PCDH15_uc010qib.1_Missense_Mutation_p.G1212S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1234	Cadherin 11.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				TCGGCTTTGCCGCTCAGTCCC	0.408000										HNSCC(58;0.16)			14	20					0	0	0.003163	0	0
ANK3	288	broad.mit.edu	37	10	61835104	61835104	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:61835104A>T	uc001jky.2	-	37	5727	c.5535T>A	c.(5533-5535)TTT>TTA	p.F1845L	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1845	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTGATTTTGTAAATGAATTAG	0.403000													42	63					0	0	0.002222	0	0
ZNF365	22891	broad.mit.edu	37	10	64159453	64159453	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:64159453C>T	uc001jly.3	+	5	1236	c.1174C>T	c.(1174-1176)CCA>TCA	p.P392S	ZNF365_uc001jmb.3_Intron|ZNF365_uc001jmc.2_Intron|ZNF365_uc001jlz.3_Missense_Mutation_p.P377S|ZNF365_uc001jma.3_RNA	NM_014951	NP_055766	Q70YC4	TALAN_HUMAN	zinc finger protein 365 isoform A	Error:Variant_position_missing_in_Q70YC4_after_alignment										ovary(1)|skin(1)	2	Prostate(12;0.0297)|all_hematologic(501;0.228)					CTGCAGACCTCCAAAGAAAGG	0.517000													38	46					0	0	0.004878	0	0
TET1	80312	broad.mit.edu	37	10	70332292	70332292	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:70332292C>T	uc001jok.3	+	2	702	c.197C>T	c.(196-198)CCA>CTA	p.P66L		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	66					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GAACCTAAACCACCCGTGCCA	0.428000													33	36					0	0	0.003271	0	0
DDX50	79009	broad.mit.edu	37	10	70679674	70679674	+	Silent	SNP	T	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:70679674T>C	uc001jou.2	+	8	1283	c.1176T>C	c.(1174-1176)GCT>GCC	p.A392A	DDX50_uc010qjc.1_Silent_p.A392A	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	392	Helicase C-terminal.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						AAGGGAGGGCTATTATTTTCT	0.398000													3	87					0	0	0.000248	0	0
KIF20B	9585	broad.mit.edu	37	10	91497679	91497679	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:91497679C>T	uc001kgs.1	+	20	3153	c.3081C>T	c.(3079-3081)GAC>GAT	p.D1027D	KIF20B_uc001kgr.1_Silent_p.D987D|KIF20B_uc001kgt.1_Silent_p.D238D|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1027					cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						CACAGTTAGACCTTTTAGGTA	0.338000													29	65					0	0	0.006320	0	0
VTI1A	143187	broad.mit.edu	37	10	114575103	114575103	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:114575103C>T	uc001kzz.2	+	8	991	c.615C>T	c.(613-615)ACC>ACT	p.T205T		NM_145206	NP_660207	Q96AJ9	VTI1A_HUMAN	SNARE Vti1a-beta protein	Error:Variant_position_missing_in_Q96AJ9_after_alignment					intracellular protein transport|retrograde transport, endosome to Golgi	SNARE complex	protein transporter activity|SNAP receptor activity			ovary(1)	1		Colorectal(252;0.0314)|Breast(234;0.183)		Epithelial(162;0.0126)|all cancers(201;0.0487)		TGGTCATCACCATCCTGATGG	0.438000													28	41					0	0	0.002445	0	0
ATRNL1	26033	broad.mit.edu	37	10	117001393	117001393	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:117001393C>T	uc001lcg.2	+	10	1952	c.1566C>T	c.(1564-1566)TAC>TAT	p.Y522Y		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	522	Kelch 4.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TTGCCAGATACCTTCATTCAG	0.333000													14	30					0	0	0.003163	0	0
FRG2B	441581	broad.mit.edu	37	10	135438846	135438846	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr10:135438846G>A	uc010qvg.1	-	4	647	c.594C>T	c.(592-594)ATC>ATT	p.I198I		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	198						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		GTGGAGAATGGATCTGCTGTG	0.562000													16	20					0	0	0.003330	0	0
ODF3	113746	broad.mit.edu	37	11	198517	198517	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:198517G>A	uc001lob.2	+	5	760	c.466G>A	c.(466-468)GCC>ACC	p.A156T	ODF3_uc010qvk.1_Missense_Mutation_p.A156T|ODF3_uc001loc.2_3'UTR	NM_053280	NP_444510	Q96PU9	ODF3A_HUMAN	outer dense fiber of sperm tails 3	156					cell differentiation|multicellular organismal development|spermatogenesis	cytoplasm				ovary(1)	1		all_cancers(49;9.23e-07)|all_epithelial(84;0.000315)|Breast(177;0.00122)|Ovarian(85;0.0202)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;3.95e-27)|Epithelial(43;2.66e-26)|OV - Ovarian serous cystadenocarcinoma(40;5.55e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.105)|LUSC - Lung squamous cell carcinoma(625;0.122)		CGTCGGCAAGGCCTCCCAGCC	0.642000													16	40					0	0	0.003163	0	0
MUC6	4588	broad.mit.edu	37	11	1025023	1025023	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:1025023G>A	uc001lsw.2	-	24	3097	c.3046C>T	c.(3046-3048)CGC>TGC	p.R1016C		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1016	VWFD 3.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		TACCTGCTGCGCGTCTCGAAG	0.642000													13	16					0	0	0.001855	0	0
TRIM3	10612	broad.mit.edu	37	11	6477304	6477304	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:6477304G>A	uc001mdh.2	-	8	1918	c.1531C>T	c.(1531-1533)CAG>TAG	p.Q511*	TRIM3_uc001mdi.2_Nonsense_Mutation_p.Q511*|TRIM3_uc010raj.1_Nonsense_Mutation_p.Q392*|TRIM3_uc009yfd.2_Nonsense_Mutation_p.Q511*|TRIM3_uc010rak.1_Nonsense_Mutation_p.Q511*	NM_006458	NP_006449	O75382	TRIM3_HUMAN	tripartite motif-containing 3	511	NHL 1.				nervous system development|protein transport	early endosome	protein C-terminus binding|zinc ion binding			central_nervous_system(2)|large_intestine(1)|ovary(1)|skin(1)	5		all_lung(207;9.97e-06)|Lung NSC(207;1.74e-05)|Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;9.34e-10)|Lung(200;0.0234)|LUSC - Lung squamous cell carcinoma(625;0.133)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GTGCTTACCTGAATACACTGG	0.493000													15	46					0	0	0.004990	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159526	18159526	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:18159526C>T	uc001mnu.2	+	3	1138	c.777C>T	c.(775-777)TTC>TTT	p.F259F		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	259	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						TTTCCATTTTCCTGTCCGCTC	0.493000													24	55					0	0	0.002780	0	0
LDHAL6A	160287	broad.mit.edu	37	11	18485507	18485507	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:18485507G>A	uc001mop.1	+	3	388	c.127_splice	c.e3-1	p.G43_splice	LDHAL6A_uc001moq.2_Splice_Site_p.G43_splice	NM_001144071	NP_001137543	Q6ZMR3	LDH6A_HUMAN	lactate dehydrogenase A-like 6A						glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	ATGTTTTTCAGGGTTTGAGTG	0.383000													16	32					0	0	0.004990	0	0
NAV2	89797	broad.mit.edu	37	11	20104680	20104680	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:20104680C>T	uc001mpr.3	+	26	5823	c.5462C>T	c.(5461-5463)TCC>TTC	p.S1821F	NAV2_uc001mpp.2_Missense_Mutation_p.S1754F|NAV2_uc009yhx.2_Missense_Mutation_p.S882F|NAV2_uc009yhz.2_Missense_Mutation_p.S463F|NAV2_uc001mpu.2_Missense_Mutation_p.S256F	NM_182964	NP_892009	Q8IVL1	NAV2_HUMAN	neuron navigator 2 isoform 1	1877						nucleus	ATP binding|helicase activity			skin(4)|ovary(1)|pancreas(1)	6						CACAATGGGTCCACAGGTTCC	0.488000													31	60					0	0	0.002836	0	0
NUP160	23279	broad.mit.edu	37	11	47819553	47819553	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:47819553G>A	uc001ngm.2	-	26	3245	c.3160C>T	c.(3160-3162)CCC>TCC	p.P1054S	NUP160_uc009ylw.2_RNA	NM_015231	NP_056046	Q12769	NU160_HUMAN	nucleoporin 160kDa	1054					carbohydrate metabolic process|glucose transport|mitotic prometaphase|mRNA export from nucleus|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|Nup107-160 complex	nucleocytoplasmic transporter activity|protein binding			ovary(4)|lung(1)|central_nervous_system(1)|skin(1)	7						TTCACATAGGGAAACTCTACA	0.398000													21	43					0	0	0.002299	0	0
OR4B1	119765	broad.mit.edu	37	11	48238934	48238934	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:48238934C>T	uc010rhs.1	+	1	573	c.573C>T	c.(571-573)TTC>TTT	p.F191F		NM_001005470	NP_001005470	Q8NGF8	OR4B1_HUMAN	olfactory receptor, family 4, subfamily B,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|pancreas(1)	4						CTGACACCTTCATGGAGGGGG	0.453000													25	93					0	0	0.003954	0	0
OR4C15	81309	broad.mit.edu	37	11	55322305	55322305	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:55322305C>T	uc010rig.1	+	1	523	c.523C>T	c.(523-525)CGT>TGT	p.R175C		NM_001001920	NP_001001920	Q8NGM1	OR4CF_HUMAN	olfactory receptor, family 4, subfamily C,	121	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGCCTATGATCGTTATGTGGC	0.507000										HNSCC(20;0.049)			35	103					0	0	0.003755	0	0
OR8H2	390151	broad.mit.edu	37	11	55872707	55872707	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:55872707C>T	uc010riy.1	+	1	189	c.189C>T	c.(187-189)TTC>TTT	p.F63F		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					TGTATTTTTTCCTTACTCACC	0.418000										HNSCC(53;0.14)			60	209					0	0	0.003610	0	0
OR8J1	219477	broad.mit.edu	37	11	56127730	56127730	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:56127730C>T	uc010rjh.1	+	1	8	c.8C>T	c.(7-9)CCT>CTT	p.P3L		NM_001005205	NP_001005205	Q8NGP2	OR8J1_HUMAN	olfactory receptor, family 8, subfamily J,	3	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					GACATGGCTCCTGAAAATTTC	0.433000													20	64					0	0	0.008871	0	0
CLP1	10978	broad.mit.edu	37	11	57428556	57428556	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:57428556G>A	uc001nkw.2	+	3	1065	c.926G>A	c.(925-927)CGA>CAA	p.R309Q	CLP1_uc010rjw.1_Missense_Mutation_p.R245Q|CLP1_uc009yml.2_Missense_Mutation_p.R309Q	NM_006831	NP_006822	Q92989	CLP1_HUMAN	ATP/GTP-binding protein isoform 1	309					mRNA 3'-end processing|nuclear mRNA splicing, via spliceosome|siRNA loading onto RISC involved in RNA interference|targeting of mRNA for destruction involved in RNA interference|termination of RNA polymerase II transcription|tRNA splicing, via endonucleolytic cleavage and ligation	nucleoplasm|tRNA-intron endonuclease complex	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|ATP-dependent polyribonucleotide 5'-hydroxyl-kinase activity			ovary(1)	1						TATGGATTCCGAGGCTGTTTC	0.502000													34	134					0	0	0.002445	0	0
OR10W1	81341	broad.mit.edu	37	11	58034641	58034641	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:58034641G>A	uc001nmq.1	-	1	1092	c.690C>T	c.(688-690)TCC>TCT	p.S230S		NM_207374	NP_997257	Q8NGF6	O10W1_HUMAN	olfactory receptor, family 10, subfamily W,	230	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AAGAGCAGGTGGAGAAGGCCC	0.587000													31	55					0	0	0.001786	0	0
OR5B21	219968	broad.mit.edu	37	11	58274946	58274946	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:58274946G>A	uc010rki.1	-	1	633	c.633C>T	c.(631-633)ATC>ATT	p.I211I		NM_001005218	NP_001005218	A6NL26	OR5BL_HUMAN	olfactory receptor, family 5, subfamily B,	211	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				AAGAAATAAGGATGACCAGGA	0.488000													9	30					0	0	0.006214	0	0
EEF1G	1937	broad.mit.edu	37	11	62327212	62327212	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:62327212G>A	uc001ntm.1	-	10	1399	c.1253C>T	c.(1252-1254)TCC>TTC	p.S418F	EEF1G_uc010rlw.1_Missense_Mutation_p.S468F|EEF1G_uc001ntn.1_3'UTR	NM_001404	NP_001395	P26641	EF1G_HUMAN	eukaryotic translation elongation factor 1	418	EF-1-gamma C-terminal.				response to virus	cytosol|eukaryotic translation elongation factor 1 complex	protein binding|translation elongation factor activity				0						CCCCTCCCAGGAAAAGTACTC	0.557000													14	17					0	0	0.001855	0	0
NXF1	10482	broad.mit.edu	37	11	62569486	62569486	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:62569486G>A	uc001nvf.1	-	5	622	c.486C>T	c.(484-486)TTC>TTT	p.F162F	NXF1_uc001nvg.1_Silent_p.F162F|NXF1_uc009yog.1_Silent_p.F205F|NXF1_uc010rmh.1_Silent_p.F25F	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	162	Interaction with THOC4.|RRM.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						CGTCTTCAACGAAGAACTGGG	0.522000													32	93					0	0	0.001786	0	0
C11orf85	283129	broad.mit.edu	37	11	64707209	64707209	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:64707209C>T	uc001ocb.1	-	9	651	c.577G>A	c.(577-579)GAA>AAA	p.E193K	C11orf85_uc001occ.1_RNA|C11orf85_uc001ocd.1_Missense_Mutation_p.R136Q	NM_001037225	NP_001032302	Q3KP22	CK085_HUMAN	hypothetical protein LOC283129	193											0						TGGGACAATTCGCCCTGGCAG	0.383000													34	58					0	0	0.003271	0	0
CABP4	57010	broad.mit.edu	37	11	67223069	67223069	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:67223069G>A	uc001olo.2	+	1	252	c.175G>A	c.(175-177)GGG>AGG	p.G59R	GPR152_uc001olm.2_5'Flank|CABP4_uc001oln.2_Intron	NM_145200	NP_660201	P57796	CABP4_HUMAN	calcium binding protein 4	59					visual perception	cytoplasm|extracellular region|terminal button	calcium ion binding				0			BRCA - Breast invasive adenocarcinoma(15;8.18e-06)			TGGCAGCTCTGGGGAGCAGAC	0.687000													8	17					0	0	0.003080	0	0
NDUFV1	4723	broad.mit.edu	37	11	67379630	67379630	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:67379630G>A	uc001omj.2	+	9	1355	c.1202G>A	c.(1201-1203)AGG>AAG	p.R401K	NDUFV1_uc010rpv.1_Missense_Mutation_p.R300K|NDUFV1_uc001oml.2_Missense_Mutation_p.R394K|NDUFV1_uc001omk.3_Missense_Mutation_p.R392K|NDUFV1_uc010rpw.1_Missense_Mutation_p.R110K	NM_007103	NP_009034	P49821	NDUV1_HUMAN	NADH dehydrogenase ubiquinone flavoprotein 1	401					mitochondrial electron transport, NADH to ubiquinone|transport	mitochondrial respiratory chain complex I	4 iron, 4 sulfur cluster binding|FMN binding|metal ion binding|NAD binding|NADH dehydrogenase (ubiquinone) activity			skin(1)	1					NADH(DB00157)	CGTTTCGTGAGGGGGGATGCC	0.632000													33	90					0	0	0.005524	0	0
SUV420H1	51111	broad.mit.edu	37	11	67947635	67947635	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:67947635G>A	uc001onm.1	-	4	597	c.341C>T	c.(340-342)TCA>TTA	p.S114L	SUV420H1_uc009yse.1_5'UTR|SUV420H1_uc001onn.1_5'UTR|SUV420H1_uc009ysf.2_5'UTR|SUV420H1_uc001ono.1_Missense_Mutation_p.S114L|SUV420H1_uc001onp.2_Missense_Mutation_p.S114L|SUV420H1_uc010rqa.1_Intron|SUV420H1_uc001onq.2_Missense_Mutation_p.S114L	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						gtcagattttgaaaaatgcct	0.129000													5	8					0	0	0.001984	0	0
SHANK2	22941	broad.mit.edu	37	11	70332969	70332969	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:70332969G>A	uc001oqc.2	-	21	3507	c.3429C>T	c.(3427-3429)TCC>TCT	p.S1143S	SHANK2_uc010rqn.1_Silent_p.S555S|SHANK2_uc001opz.2_Silent_p.S548S|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	764					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			TCGGCATGGGGGATGACAGCT	0.682000													18	40					0	0	0.007413	0	0
CLPB	81570	broad.mit.edu	37	11	72145245	72145245	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:72145245G>A	uc001osj.2	-	1	324	c.274C>T	c.(274-276)CCT>TCT	p.P92S	CLPB_uc010rqx.1_Missense_Mutation_p.S11F|CLPB_uc010rqy.1_Missense_Mutation_p.P92S|CLPB_uc001osk.2_Missense_Mutation_p.P92S|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_5'UTR	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	92					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						TCGGGACCAGGAAGGCGTCCC	0.687000											OREG0021194	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	90	199					0	0	0.003610	0	0
KIAA1377	57562	broad.mit.edu	37	11	101833617	101833617	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:101833617G>A	uc001pgm.2	+	6	2121	c.1851G>A	c.(1849-1851)AAG>AAA	p.K617K	KIAA1377_uc001pgn.2_Silent_p.K573K|KIAA1377_uc010run.1_Silent_p.K418K|KIAA1377_uc009yxa.1_Silent_p.K418K	NM_020802	NP_065853	Q9P2H0	K1377_HUMAN	hypothetical protein LOC57562	617							protein binding			breast(2)|ovary(1)|central_nervous_system(1)	4	all_epithelial(12;0.0104)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00931)		BRCA - Breast invasive adenocarcinoma(274;0.038)		AATTAACAAAGGAAAAAGGTG	0.313000													15	37					0	0	0.004007	0	0
EXPH5	23086	broad.mit.edu	37	11	108382300	108382300	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:108382300C>T	uc001pkk.2	-	6	4045	c.3934G>A	c.(3934-3936)GAA>AAA	p.E1312K	EXPH5_uc010rvy.1_Missense_Mutation_p.E1124K|EXPH5_uc010rvz.1_Missense_Mutation_p.E1156K|EXPH5_uc010rwa.1_Missense_Mutation_p.E1236K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1312					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		TTTAGATTTTCACATGAAGGT	0.413000													20	37					0	0	0.001523	0	0
ALG9	79796	broad.mit.edu	37	11	111707007	111707007	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:111707007G>A	uc001pmb.2	-	14	1561	c.1462C>T	c.(1462-1464)CAG>TAG	p.Q488*	ALG9_uc001ply.2_Nonsense_Mutation_p.Q317*|ALG9_uc001plz.2_Nonsense_Mutation_p.Q324*|ALG9_uc010rwm.1_Nonsense_Mutation_p.Q495*|ALG9_uc010rwn.1_Nonsense_Mutation_p.Q442*|ALG9_uc010rwo.1_Nonsense_Mutation_p.Q316*	NM_001077690	NP_001071158	Q9H6U8	ALG9_HUMAN	asparagine-linked glycosylation 9 protein	488	Lumenal (Potential).				dolichol-linked oligosaccharide biosynthetic process|GPI anchor biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane|intrinsic to endoplasmic reticulum membrane	alpha-1,2-mannosyltransferase activity			large_intestine(1)|ovary(1)	2		all_cancers(61;2.34e-15)|all_epithelial(67;1.72e-09)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)		Epithelial(105;6.81e-07)|BRCA - Breast invasive adenocarcinoma(274;1.15e-06)|all cancers(92;1.3e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0587)		GGAATGAACTGAAGCTGCCAA	0.418000													13	28					0	0	0.001855	0	0
DSCAML1	57453	broad.mit.edu	37	11	117314695	117314695	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr11:117314695G>A	uc001prh.1	-	21	3951	c.3949C>T	c.(3949-3951)CGC>TGC	p.R1317C		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	1257	Extracellular (Potential).|Fibronectin type-III 4.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		TGCTGACCGCGGTTTAGGTGG	0.627000													12	22					0	0	0.001855	0	0
LOC100288778	100288778	broad.mit.edu	37	12	88651	88651	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:88651A>G	uc010scy.1	+	6	715	c.160A>G	c.(160-162)AGC>GGC	p.S54G	LOC100288778_uc010scz.1_RNA|LOC100288778_uc010sdb.1_RNA|LOC100288778_uc010sdc.1_RNA|LOC100288778_uc010sdd.1_Missense_Mutation_p.S54G|LOC100288778_uc010sde.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdf.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdg.1_Missense_Mutation_p.S54G|LOC100288778_uc010sdh.1_RNA					SubName: Full=Actin nucleation promoting factor; Flags: Fragment;												0						TGACCTGCCCAGCATTGCCAA	0.587000													3	27					0	0	0.004672	0	0
ZNF384	171017	broad.mit.edu	37	12	6781621	6781621	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:6781621G>A	uc010sfh.1	-	8	1197	c.989C>T	c.(988-990)TCC>TTC	p.S330F	ZNF384_uc001qpz.2_Intron|ZNF384_uc001qqa.2_Intron|ZNF384_uc001qqb.2_Intron|ZNF384_uc001qqc.2_Intron|ZNF384_uc001qqd.2_Intron|ZNF384_uc001qqe.2_Intron	NM_001135734	NP_001129206	Q8TF68	ZN384_HUMAN	nuclear matrix transcription factor 4 isoform d	330	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/ZNF384(4)	haematopoietic_and_lymphoid_tissue(4)|central_nervous_system(3)|kidney(1)	8						GGCCAGGTAGGAGGTGTTGGC	0.622000			T	EWSR1|TAF15 	ALL								10	32					0	0	0.006214	0	0
TAS2R10	50839	broad.mit.edu	37	12	10977959	10977959	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:10977959G>A	uc001qyy.1	-	1	910	c.910C>T	c.(910-912)CTC>TTC	p.L304F		NM_023921	NP_076410	Q9NYW0	T2R10_HUMAN	taste receptor, type 2, member 10	304	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	taste receptor activity				0						GTGACTCTGAGATTTTTCCTT	0.418000													14	44					0	0	0.003163	0	0
CNTN1	1272	broad.mit.edu	37	12	41410719	41410719	+	Splice_Site	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:41410719G>A	uc001rmm.1	+	19	2532	c.2419_splice	c.e19+1	p.A807_splice	CNTN1_uc001rmn.1_Splice_Site_p.A796_splice	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor						axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GCACAAGACGGTAGGTGAAAG	0.423000													7	33					0	0	0.001984	0	0
PDZRN4	29951	broad.mit.edu	37	12	41900423	41900423	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:41900423G>A	uc010skn.1	+	4	480	c.412G>A	c.(412-414)GAC>AAC	p.D138N	PDZRN4_uc001rmq.3_Missense_Mutation_p.D79N|PDZRN4_uc009zjz.2_Missense_Mutation_p.D77N|PDZRN4_uc001rmr.2_5'Flank	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	337							ubiquitin-protein ligase activity|zinc ion binding			lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				CACTCAGACGGACATCACCTT	0.527000													25	38					0	0	0.003954	0	0
ARID2	196528	broad.mit.edu	37	12	46244034	46244034	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:46244034C>T	uc001ros.1	+	15	2128	c.2128C>T	c.(2128-2130)CCT>TCT	p.P710S	ARID2_uc001ror.2_Missense_Mutation_p.P710S|ARID2_uc009zkg.1_Missense_Mutation_p.P166S|ARID2_uc009zkh.1_Missense_Mutation_p.P337S|ARID2_uc001rou.1_Missense_Mutation_p.P44S	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	710					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		AGCTCCAATTCCTTGTGAAGT	0.438000													49	91					0	0	0.003610	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54936379	54936379	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:54936379C>T	uc001sgc.3	+	31	3373	c.3294C>T	c.(3292-3294)TTC>TTT	p.F1098F	NCKAP1L_uc010sox.1_Silent_p.F640F|NCKAP1L_uc010soy.1_Silent_p.F1048F	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	1098					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						AGTCATCCTTCCTGACCCTGG	0.527000													38	123					0	0	0.002222	0	0
OR6C70	390327	broad.mit.edu	37	12	55863568	55863568	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:55863568C>T	uc010spn.1	-	1	355	c.355G>A	c.(355-357)GAT>AAT	p.D119N		NM_001005499	NP_001005499	A6NIJ9	O6C70_HUMAN	olfactory receptor, family 6, subfamily C,	119	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACATAGCGATCATAGGACAGA	0.398000													21	34					0	0	0.001523	0	0
MARS	4141	broad.mit.edu	37	12	57906612	57906613	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:57906612_57906613GG>AA	uc001sog.2	+	15	1855_1856	c.1832_1833GG>AA	c.(1831-1833)GGG>GAA	p.G611E	MARS_uc001sof.1_RNA|MARS_uc010srq.1_Missense_Mutation_p.G377E|MARS_uc001soh.1_Missense_Mutation_p.G6E	NM_004990	NP_004981	P56192	SYMC_HUMAN	methionyl-tRNA synthetase	611					methionyl-tRNA aminoacylation	cytosol	ATP binding|methionine-tRNA ligase activity|protein binding|tRNA binding			ovary(3)|central_nervous_system(1)|pancreas(1)	5			GBM - Glioblastoma multiforme(3;4.27e-41)		L-Methionine(DB00134)	CAGGACACGGGGATCCCTGCTG	0.545000													39	116					0	0	0.004672	0	0
TSFM	10102	broad.mit.edu	37	12	58190272	58190272	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:58190272C>T	uc001sqi.2	+	6	933	c.884C>T	c.(883-885)ACC>ATC	p.T295I	TSFM_uc010sse.1_Missense_Mutation_p.T255I|TSFM_uc001sqh.2_Missense_Mutation_p.T316I|TSFM_uc010ssf.1_3'UTR	NM_005726	NP_005717	P43897	EFTS_HUMAN	Ts translation elongation factor, mitochondrial	295					regulation of transcription elongation, DNA-dependent	mitochondrion|nucleus	translation elongation factor activity				0	all_cancers(7;6.31e-80)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					CCCTCCATTACCTTGGGGCAG	0.562000													4	11					0	0	0.000602	0	0
PMCH	5367	broad.mit.edu	37	12	102591416	102591416	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:102591416C>T	uc001tjl.2	-	1	199	c.133G>A	c.(133-135)GGG>AGG	p.G45R		NM_002674	NP_002665	P20382	MCH_HUMAN	pro-melanin-concentrating hormone	45					cell differentiation|neuropeptide signaling pathway|spermatogenesis|synaptic transmission		melanin-concentrating hormone activity				0						AAGCCTTTCCCCAACCTGAAT	0.348000													11	35					0	0	0.008291	0	0
SDS	10993	broad.mit.edu	37	12	113836602	113836602	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:113836602G>A	uc001tvg.2	-	4	365	c.243C>T	c.(241-243)GTC>GTT	p.V81V	SDS_uc001tvh.1_Silent_p.V81V	NM_006843	NP_006834	P20132	SDHL_HUMAN	serine dehydratase	81					gluconeogenesis|L-serine catabolic process|pyruvate biosynthetic process	cytoplasm	L-serine ammonia-lyase activity|L-threonine ammonia-lyase activity|protein homodimerization activity|pyridoxal phosphate binding			pancreas(1)	1					L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	TGGTGGCGGGGACGCCGAGTT	0.662000													8	14					0	0	0.003080	0	0
EIF2B1	1967	broad.mit.edu	37	12	124111662	124111662	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:124111662G>A	uc001ufm.2	-	5	554	c.411C>T	c.(409-411)GTC>GTT	p.V137V	EIF2B1_uc001ufn.2_Silent_p.V137V|EIF2B1_uc010tat.1_Silent_p.V137V	NM_001414	NP_001405	Q14232	EI2BA_HUMAN	eukaryotic translation initiation factor 2B,	137					cellular response to stimulus|oligodendrocyte development|regulation of translational initiation|response to glucose stimulus|response to heat|response to peptide hormone stimulus	cytosol|eukaryotic translation initiation factor 2B complex|membrane fraction|plasma membrane	protein binding|translation initiation factor activity				0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;6.67e-05)|Epithelial(86;0.000353)|all cancers(50;0.00489)		CTGCTTCCAGGACTCTCAGGA	0.527000													21	77					0	0	0.002299	0	0
DNAH10	196385	broad.mit.edu	37	12	124283838	124283838	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr12:124283838G>A	uc001uft.3	+	13	1880	c.1855G>A	c.(1855-1857)GAA>AAA	p.E619K	DNAH10_uc010tav.1_Missense_Mutation_p.E161K|DNAH10_uc010taw.1_Missense_Mutation_p.E104K	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	619	Stem (By similarity).|Potential.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GAAGGAGTATGAAGACAGAAA	0.443000													10	31					0	0	0.000978	0	0
BRCA2	675	broad.mit.edu	37	13	32950923	32950923	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr13:32950923C>T	uc001uub.1	+	21	8976	c.8749C>T	c.(8749-8751)CTT>TTT	p.L2917F		NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	2917					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		CCCAGCTTACCTTGAGGTGAG	0.438000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			13	15					0	0	0.001368	0	0
COL4A1	1282	broad.mit.edu	37	13	110847436	110847436	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr13:110847436G>A	uc001vqw.3	-	22	1437	c.1315C>T	c.(1315-1317)CCA>TCA	p.P439S	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	439	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TGGTCACCTGGAGGTCCGGGC	0.428000													21	22					0	0	0.002299	0	0
OR4M1	441670	broad.mit.edu	37	14	20248933	20248933	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:20248933G>T	uc010tku.1	+	1	452	c.452G>T	c.(451-453)GGG>GTG	p.G151V		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCCTGGATGGGGGGCTTCATT	0.498000													66	374					4.96364e-44	5.56099e-44	0.003610	1	0
SUPT16H	11198	broad.mit.edu	37	14	21821653	21821654	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:21821653_21821654GG>AA	uc001wao.2	-	25	3330_3331	c.2991_2992CC>TT	c.(2989-2994)GCCCGA>GCTTGA	p.R998*	SUPT16H_uc001wan.2_Nonsense_Mutation_p.R142*	NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	998	Glu-rich (acidic).				DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		AAACCTTTTCGGGCTTCTTCCT	0.347000													32	75					0	0	0.004672	0	0
NID2	22795	broad.mit.edu	37	14	52526933	52526933	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:52526933C>T	uc001wzo.2	-	3	910	c.676G>A	c.(676-678)GGC>AGC	p.G226S	NID2_uc010tqs.1_Missense_Mutation_p.G226S|NID2_uc010tqt.1_Missense_Mutation_p.G226S|NID2_uc001wzp.2_Missense_Mutation_p.G226S	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	226	NIDO.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					CGGCAGAAGCCCACCCGAGCT	0.502000													12	43					0	0	0.001368	0	0
ABCD4	5826	broad.mit.edu	37	14	74764666	74764666	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:74764666G>A	uc001xpr.2	-	4	544	c.392C>T	c.(391-393)ACC>ATC	p.T131I	ABCD4_uc001xps.2_5'UTR|ABCD4_uc001xpt.2_5'UTR|ABCD4_uc010tur.1_Missense_Mutation_p.T44I|ABCD4_uc001xpu.2_Intron|ABCD4_uc001xpv.2_RNA	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	131	ABC transmembrane type-1.					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		CACGTTGAGGGTGTAGTACGC	0.567000													21	52					0	0	0.001882	0	0
LTBP2	4053	broad.mit.edu	37	14	74968203	74968203	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:74968203C>T	uc001xqa.2	-	35	5648	c.5261G>A	c.(5260-5262)GGC>GAC	p.G1754D		NM_000428	NP_000419	Q14767	LTBP2_HUMAN	latent transforming growth factor beta binding	1754	EGF-like 19; calcium-binding (Potential).				protein secretion|protein targeting|transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|growth factor binding			liver(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(234;0.00219)|READ - Rectum adenocarcinoma(1;0.0649)		ACAGGTGTAGCCCTCCCGCAC	0.632000											OREG0022805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	81					0	0	0.002096	0	0
ANGEL1	23357	broad.mit.edu	37	14	77269744	77269745	+	Missense_Mutation	DNP	GG	AA	AA	rs149469500	byFrequency	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:77269744_77269745GG>AA	uc001xsv.2	-	7	1700_1701	c.1587_1588CC>TT	c.(1585-1590)GTCCTT>GTTTTT	p.L530F	ANGEL1_uc010tvf.1_Intron	NM_015305	NP_056120	Q9UNK9	ANGE1_HUMAN	angel homolog 1	530										ovary(2)|central_nervous_system(1)|skin(1)	4			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0285)		CCTTCCATAAGGACCAGTCCTA	0.470000													5	53					0	0	0.004672	0	0
CCDC88C	440193	broad.mit.edu	37	14	91791208	91791208	+	Missense_Mutation	SNP	C	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:91791208C>A	uc010aty.2	-	12	1356	c.1257G>T	c.(1255-1257)GAG>GAT	p.E419D		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	419	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCTGTGCAATCTCAAGGACCA	0.547000													25	65					9.57634e-11	1.06072e-10	0.003330	1	0
PPP4R4	57718	broad.mit.edu	37	14	94700961	94700961	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:94700961G>A	uc001ycs.1	+	7	840	c.686G>A	c.(685-687)CGA>CAA	p.R229Q		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	229	HEAT 1.					cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						TATGAAGTTCGATCTTGTATG	0.388000													9	34					0	0	0.000978	0	0
PPP4R4	57718	broad.mit.edu	37	14	94708704	94708704	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:94708704G>A	uc001ycs.1	+	11	1379	c.1225G>A	c.(1225-1227)GAA>AAA	p.E409K		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	409	HEAT 3.					cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						CCATGACCCTGAAGTACCAGT	0.383000													40	104					0	0	0.008740	0	0
SERPINA12	145264	broad.mit.edu	37	14	94962730	94962730	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:94962730C>T	uc001ydj.2	-	4	1681	c.885G>A	c.(883-885)TGG>TGA	p.W295*		NM_173850	NP_776249	Q8IW75	SPA12_HUMAN	serine (or cysteine) proteinase inhibitor, clade	295					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			central_nervous_system(2)|ovary(1)|lung(1)	4				COAD - Colon adenocarcinoma(157;0.235)		GTAATGTTTTCCATCTGGAGA	0.478000													34	77					0	0	0.002445	0	0
ADAM6	8755	broad.mit.edu	37	14	106092128	106092128	+	RNA	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:106092128G>A	uc010tyt.1	-	3645		c.61890C>T			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron					Parts of antibodies, mostly variable regions.												0						TGTCCACCTTGGTGTTGCTGG	0.627000													52	191					0	0	0.003610	0	0
OR4N3P	390539	broad.mit.edu	37	15	22414006	22414006	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:22414006G>A	uc001yuf.2	+	1	305	c.305G>A	c.(304-306)CGA>CAA	p.R102Q		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TGTGATGTCCGACAGGTCATC	0.512000													21	150					0	0	0.001882	0	0
AQR	9716	broad.mit.edu	37	15	35212628	35212628	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:35212628T>A	uc001ziv.2	-	14	1307	c.1126A>T	c.(1126-1128)ACA>TCA	p.T376S		NM_014691	NP_055506	O60306	AQR_HUMAN	aquarius	376						catalytic step 2 spliceosome	RNA binding			large_intestine(1)	1		Lung NSC(122;8.7e-10)|all_lung(180;1.47e-08)		all cancers(64;4.34e-18)|GBM - Glioblastoma multiforme(113;4.59e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0283)		TGGTGGAGTGTGTTTGAACTG	0.318000													6	17					0	0	0.003080	0	0
VPS39	23339	broad.mit.edu	37	15	42483350	42483350	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:42483350G>A	uc001zpd.2	-	5	404	c.253C>T	c.(253-255)CAG>TAG	p.Q85*	VPS39_uc001zpc.2_Nonsense_Mutation_p.Q74*	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	85	CNH.				protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		ATCTTAAACTGGGAAACCACA	0.343000													26	47					0	0	0.008361	0	0
COPS2	9318	broad.mit.edu	37	15	49437178	49437178	+	Missense_Mutation	SNP	A	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:49437178A>G	uc001zxf.2	-	2	231	c.152T>C	c.(151-153)TTA>TCA	p.L51S	COPS2_uc001zxh.2_Missense_Mutation_p.L51S|COPS2_uc010ufa.1_Intron	NM_004236	NP_004227	P61201	CSN2_HUMAN	COP9 constitutive photomorphogenic homolog	51					cullin deneddylation|transcription from RNA polymerase II promoter	cytoplasm|signalosome	protein binding|signal transducer activity			lung(1)	1		all_lung(180;0.0428)		all cancers(107;1.34e-07)|GBM - Glioblastoma multiforme(94;3.02e-05)		GAAACTGCTTAATGCCGCTTT	0.328000													21	67					0	0	0.001523	0	0
UNC13C	440279	broad.mit.edu	37	15	54919039	54919039	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:54919039G>A	uc002ack.2	+	31	6373	c.6373G>A	c.(6373-6375)GAA>AAA	p.E2125K	UNC13C_uc002acm.2_Missense_Mutation_p.E46K	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	2125	C2 2.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		TCTCGGAAAGGAAAATCGACC	0.294000													13	41					0	0	0.002450	0	0
RNF111	54778	broad.mit.edu	37	15	59381920	59381920	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:59381920G>C	uc002afv.2	+	11	2884	c.2605G>C	c.(2605-2607)GGA>CGA	p.G869R	RNF111_uc002afs.2_Missense_Mutation_p.G869R|RNF111_uc002aft.2_Missense_Mutation_p.G878R|RNF111_uc002afu.2_Missense_Mutation_p.G868R|RNF111_uc002afw.2_Missense_Mutation_p.G878R|RNF111_uc002afx.2_Missense_Mutation_p.G395R|RNF111_uc002afy.2_Missense_Mutation_p.G20R	NM_017610	NP_060080	Q6ZNA4	RN111_HUMAN	ring finger protein 111	869					multicellular organismal development|positive regulation of transcription, DNA-dependent	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2				all cancers(107;0.194)		AGGATTGGATGGAACATCATT	0.343000													73	193					0	0	0.003610	0	0
SEMA7A	8482	broad.mit.edu	37	15	74706984	74706984	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:74706984G>A	uc002axv.2	-	10	1238	c.1198C>T	c.(1198-1200)CCA>TCA	p.P400S	SEMA7A_uc010ulk.1_Missense_Mutation_p.P235S|SEMA7A_uc010ull.1_Missense_Mutation_p.P386S	NM_003612	NP_003603	O75326	SEM7A_HUMAN	semaphorin 7A isoform 1 preproprotein	400	Sema.				axon guidance|immune response|inflammatory response|integrin-mediated signaling pathway|positive regulation of axon extension|positive regulation of ERK1 and ERK2 cascade|positive regulation of macrophage cytokine production|regulation of inflammatory response	anchored to membrane|external side of plasma membrane	receptor activity			breast(1)|central_nervous_system(1)	2						TGGAACAATGGCGTCTTCAGA	0.587000													37	100					0	0	0.003755	0	0
RASGRF1	5923	broad.mit.edu	37	15	79296400	79296400	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:79296400C>G	uc002beq.2	-	16	2616	c.2241G>C	c.(2239-2241)AAG>AAC	p.K747N	RASGRF1_uc002bep.2_Missense_Mutation_p.K731N|RASGRF1_uc010blm.1_Missense_Mutation_p.K656N|RASGRF1_uc002ber.3_Missense_Mutation_p.K731N|RASGRF1_uc010unh.1_Missense_Mutation_p.K142N|RASGRF1_uc002beo.2_5'UTR	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	747	N-terminal Ras-GEF.				activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GTGACGATGTCTTGGTGATGG	0.637000													37	83					0	0	0.005524	0	0
ANPEP	290	broad.mit.edu	37	15	90347724	90347724	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr15:90347724G>A	uc002bop.3	-	5	1314	c.1022C>T	c.(1021-1023)TCA>TTA	p.S341L		NM_001150	NP_001141	P15144	AMPN_HUMAN	membrane alanine aminopeptidase precursor	341	Extracellular.|Interaction with HCoV-229E.|Metalloprotease.				angiogenesis|cell differentiation|interspecies interaction between organisms	cytosol|ER-Golgi intermediate compartment|integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|receptor activity|zinc ion binding			ovary(3)|skin(1)	4	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.169)		Ezetimibe(DB00973)	CCACTCACCTGATTTTGGGAG	0.597000													31	74					0	0	0.002445	0	0
C16orf11	146325	broad.mit.edu	37	16	615119	615119	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:615119C>T	uc002chk.2	+	3	1807	c.1528C>T	c.(1528-1530)CAA>TAA	p.Q510*	NHLRC4_uc002chl.2_5'Flank|PIGQ_uc010bqw.2_5'Flank	NM_145270	NP_660313	P0CG20	CP011_HUMAN	hypothetical protein LOC146325	510										central_nervous_system(1)	1						TGCAGCGCCCCAACCCTTCTC	0.721000													11	20					0	0	0.001855	0	0
WDR24	84219	broad.mit.edu	37	16	737699	737699	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:737699C>T	uc002ciz.1	-	2	1282	c.522G>A	c.(520-522)CGG>CGA	p.R174R		NM_032259	NP_115635	Q96S15	WDR24_HUMAN	WD repeat domain 24	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment										ovary(1)|central_nervous_system(1)	2		Hepatocellular(780;0.0218)				TGAAGTAGTCCCGGATACTGA	0.637000													10	21					0	0	0.006214	0	0
TELO2	9894	broad.mit.edu	37	16	1551436	1551436	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:1551436C>T	uc002cly.2	+	10	1588	c.1297C>T	c.(1297-1299)CTG>TTG	p.L433L		NM_016111	NP_057195	Q9Y4R8	TELO2_HUMAN	TEL2, telomere maintenance 2, homolog	433						chromosome, telomeric region|cytoplasm|membrane|nucleus	protein binding				0		Hepatocellular(780;0.219)				AGAGGATGAACTGAGCCTCGA	0.726000													11	21					0	0	0.008291	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3140469	3140469	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:3140469G>A	uc002ctv.1	-	5	889	c.801C>T	c.(799-801)TCC>TCT	p.S267S	ZSCAN10_uc002cty.1_5'UTR|ZSCAN10_uc002ctw.1_Silent_p.S185S|ZSCAN10_uc002ctx.1_Silent_p.S195S	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	267					negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						TGCCAAGAAGGGACCCATCTT	0.642000													33	97					0	0	0.002445	0	0
BTBD12	84464	broad.mit.edu	37	16	3644580	3644580	+	Silent	SNP	A	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:3644580A>C	uc002cvp.2	-	10	2661	c.2034T>G	c.(2032-2034)GTT>GTG	p.V678V		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	678					DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						CAAAGTCAGCAACCAGCAGCC	0.587000								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				10	35					0	0	0.008291	0	0
A2BP1	54715	broad.mit.edu	37	16	7629799	7629799	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:7629799G>A	uc002cys.2	+	6	1279	c.291G>A	c.(289-291)CCG>CCA	p.P97P	A2BP1_uc010buf.1_Silent_p.P97P|A2BP1_uc002cyr.1_Silent_p.P96P|A2BP1_uc002cyt.2_Silent_p.P97P|A2BP1_uc010uxz.1_Silent_p.P140P|A2BP1_uc010uya.1_Intron|A2BP1_uc002cyv.1_Silent_p.P97P|A2BP1_uc010uyb.1_Silent_p.P97P|A2BP1_uc002cyw.2_Silent_p.P117P|A2BP1_uc002cyy.2_Silent_p.P117P|A2BP1_uc002cyx.2_Silent_p.P117P|A2BP1_uc010uyc.1_Silent_p.P117P	NM_018723	NP_061193	Q9NWB1	RFOX1_HUMAN	ataxin 2-binding protein 1 isoform 4	97					mRNA processing|RNA splicing|RNA transport	nucleus|trans-Golgi network	nucleotide binding|protein C-terminus binding|RNA binding				0		all_cancers(2;4.54e-52)|Colorectal(2;6.95e-44)|all_epithelial(2;1.15e-37)|Lung NSC(2;0.000289)|all_lung(2;0.00148)|Myeloproliferative disorder(2;0.0122)|Medulloblastoma(2;0.0354)|all_neural(2;0.0381)|all_hematologic(2;0.0749)|Renal(2;0.0758)|Melanoma(2;0.211)		Colorectal(1;3.55e-51)|COAD - Colon adenocarcinoma(2;1.92e-46)|all cancers(1;5.36e-16)|Epithelial(1;3.98e-15)|READ - Rectum adenocarcinoma(2;3.71e-05)|GBM - Glioblastoma multiforme(1;0.0499)		ACGCAGCACCGACGGATGGCC	0.522000													14	48					0	0	0.003163	0	0
ABCC6	368	broad.mit.edu	37	16	16276350	16276350	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:16276350C>T	uc002den.3	-	17	2203	c.2166G>A	c.(2164-2166)CTG>CTA	p.L722L	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	722	ABC transporter 1.|Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GTACTCTCTCCAGCCAGGGTG	0.587000													23	27					0	0	0.002299	0	0
DCUN1D3	123879	broad.mit.edu	37	16	20873521	20873521	+	Missense_Mutation	SNP	A	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:20873521A>C	uc002dhz.2	-	2	481	c.340T>G	c.(340-342)TTT>GTT	p.F114V	ERI2_uc002dht.3_Intron	NM_173475	NP_775746	Q8IWE4	DCNL3_HUMAN	DCN1, defective in cullin neddylation 1, domain	114	DCUN1.				negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of apoptosis|response to gamma radiation|response to UV-C	perinuclear region of cytoplasm				ovary(2)	2				GBM - Glioblastoma multiforme(48;0.249)		TCATTGCAAAAGCGCTCCATG	0.502000													28	78					0	0	0.005443	0	0
DNAH3	55567	broad.mit.edu	37	16	21049241	21049241	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:21049241G>A	uc010vbe.1	-	34	4792	c.4792C>T	c.(4792-4794)CAC>TAC	p.H1598Y		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1598	AAA 1 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TAGTCATAGTGATGCTGAGAG	0.542000													10	29					0	0	0.008291	0	0
CNGB1	1258	broad.mit.edu	37	16	57984328	57984328	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:57984328G>A	uc002emt.2	-	13	1056	c.991C>T	c.(991-993)CCA>TCA	p.P331S	CNGB1_uc010cdh.2_Missense_Mutation_p.P325S	NM_001297	NP_001288	Q14028	CNGB1_HUMAN	cyclic nucleotide gated channel beta 1 isoform	331					sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)|pancreas(1)	4						TCATAAGCTGGAACCACCTCT	0.517000													30	60					0	0	0.004289	0	0
KCNG4	93107	broad.mit.edu	37	16	84270876	84270876	+	Silent	SNP	G	A	A	rs141435784		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:84270876G>A	uc010voc.1	-	2	337	c.216C>T	c.(214-216)CTC>CTT	p.L72L	KCNG4_uc002fhu.1_Silent_p.L72L	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	72	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						TGCTCCAGGGGAGGAGATACC	0.617000													24	35					0	0	0.003954	0	0
DEF8	54849	broad.mit.edu	37	16	90030674	90030674	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr16:90030674G>A	uc002fpn.1	+	11	1371	c.1282G>A	c.(1282-1284)GAG>AAG	p.E428K	DEF8_uc002fpo.1_Missense_Mutation_p.E367K|DEF8_uc002fpp.1_Missense_Mutation_p.E357K|DEF8_uc010vpq.1_Missense_Mutation_p.E307K|DEF8_uc010vpr.1_Missense_Mutation_p.E350K|DEF8_uc002fpq.1_Missense_Mutation_p.E125K	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	428					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		CTCGCTCACCGAGATCCACAC	0.642000													10	9					0	0	0.006214	0	0
OR1A1	8383	broad.mit.edu	37	17	3119691	3119691	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:3119691C>T	uc010vrc.1	+	1	777	c.777C>T	c.(775-777)TTC>TTT	p.F259F		NM_014565	NP_055380	Q9P1Q5	OR1A1_HUMAN	olfactory receptor, family 1, subfamily A,	259	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GCACGTATTTCCGCCCTTTGA	0.478000													28	93					0	0	0.004656	0	0
PITPNM3	83394	broad.mit.edu	37	17	6406856	6406856	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:6406856C>T	uc002gdd.3	-	4	416	c.265G>A	c.(265-267)GAG>AAG	p.E89K	PITPNM3_uc010cln.2_Missense_Mutation_p.E53K	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	89					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		CGCTGCTTCTCCTGGAGGATG	0.557000													8	46					0	0	0.003080	0	0
C17orf74	201243	broad.mit.edu	37	17	7329686	7329686	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:7329686C>T	uc002ggw.2	+	3	449	c.376C>T	c.(376-378)CGC>TGC	p.R126C	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	126	Arg-rich.					integral to membrane					0		Prostate(122;0.157)				CTGTGTTcgtcgccgccgccg	0.428000													27	63					0	0	0.006320	0	0
ALOXE3	59344	broad.mit.edu	37	17	8000072	8000072	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:8000072C>T	uc010cnr.2	-	16	2379	c.2009G>A	c.(2008-2010)CGG>CAG	p.R670Q	ALOXE3_uc002gka.2_Missense_Mutation_p.R826Q|ALOXE3_uc010vuo.1_Missense_Mutation_p.R802Q	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	670	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						GGCGATGCTCCGCCTCGGGGC	0.632000													26	72					0	0	0.007291	0	0
MYH13	8735	broad.mit.edu	37	17	10212703	10212703	+	Missense_Mutation	SNP	C	T	T	rs140856441	by1000genomes	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:10212703C>T	uc002gmk.1	-	35	5107	c.5017G>A	c.(5017-5019)GAG>AAG	p.E1673K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1673	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						GCCAGCTGCTCCTTGAGGTCC	0.657000													11	14					0	0	0.008291	0	0
MYH2	4620	broad.mit.edu	37	17	10427143	10427143	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:10427143C>T	uc010coi.2	-	36	5362	c.5234G>A	c.(5233-5235)GGA>GAA	p.G1745E	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.G1745E|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1745	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						CTCCATCTCTCCTTGCATTTG	0.433000													13	61					0	0	0.001855	0	0
ZNF286B	729288	broad.mit.edu	37	17	18565894	18565894	+	Missense_Mutation	SNP	T	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:18565894T>G	uc010vyd.1	-	5	1176	c.925A>C	c.(925-927)ACA>CCA	p.T309P		NM_001145045	NP_001138517	P0CG31	Z286B_HUMAN	zinc finger protein 286B	309	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GAGCTTTCTGTGAAGGTTTTC	0.383000													11	51					0	0	0.000978	0	0
Unknown	0	broad.mit.edu	37	17	20405813	20405813	+	RNA	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:20405813G>A	uc002gxb.2	-	5		c.1206C>T								Homo sapiens similar to Keratin, type I cytoskeletal 16 (Cytokeratin-16) (CK-16) (Keratin-16) (K16), mRNA (cDNA clone IMAGE:4752428).																		CCTGAGAAAAGAAAGGTGGAA	0.502000													10	38					0	0	0.001368	0	0
KCNJ12	3768	broad.mit.edu	37	17	21319128	21319128	+	Silent	SNP	C	T	T	rs146165782	byFrequency	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:21319128C>T	uc002gyv.1	+	3	1179	c.474C>T	c.(472-474)GCC>GCT	p.A158A		NM_021012	NP_066292	Q14500	IRK12_HUMAN	potassium inwardly-rectifying channel, subfamily	158	Helical; Name=M2; (By similarity).				blood circulation|muscle contraction|regulation of heart contraction|synaptic transmission	integral to membrane	inward rectifier potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(3)|skin(1)	4				Colorectal(15;0.0183)|COAD - Colon adenocarcinoma(3;0.0732)	Dofetilide(DB00204)	GCCCGGTGGCCGTCTTCATGG	0.622000										Prostate(3;0.18)			8	48					0	0	0.003080	0	0
CCL11	6356	broad.mit.edu	37	17	32614638	32614638	+	Missense_Mutation	SNP	G	A	A	rs56358892		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:32614638G>A	uc002hia.1	+	3	364	c.223G>A	c.(223-225)GAC>AAC	p.D75N		NM_002986	NP_002977	P51671	CCL11_HUMAN	small inducible cytokine A11 precursor	75					cell adhesion|cellular calcium ion homeostasis|immune response|positive regulation of actin filament polymerization|positive regulation of cell migration|positive regulation of endothelial cell proliferation|positive regulation of Rac GTPase activity|protein phosphorylation|response to radiation|response to virus|signal transduction	extracellular space	chemokine activity				0	Breast(3;0.00224)	Breast(31;0.151)|Ovarian(249;0.17)		BRCA - Breast invasive adenocarcinoma(366;0.155)		TATCTGTGCCGACCCCAAGAA	0.423000													15	27					0	0	0.008871	0	0
SLFN11	91607	broad.mit.edu	37	17	33690245	33690245	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:33690245G>A	uc010ctp.2	-	4	1024	c.582C>T	c.(580-582)TTC>TTT	p.F194F	SLFN11_uc010ctq.2_Silent_p.F194F|SLFN11_uc002hjh.3_Silent_p.F194F|SLFN11_uc002hjg.3_Silent_p.F194F|SLFN11_uc010ctr.2_Silent_p.F194F	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	194						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		AGTCTTTTTGGAAAATTAGGT	0.403000													42	103					0	0	0.002222	0	0
KRT26	353288	broad.mit.edu	37	17	38928356	38928356	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:38928356G>A	uc002hvf.2	-	1	56	c.10C>T	c.(10-12)CGA>TGA	p.R4*		NM_181539	NP_853517	Q7Z3Y9	K1C26_HUMAN	keratin 26	4	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00526)				CCAGAAAGTCGAAAAGACATG	0.557000													30	54					0	0	0.002096	0	0
NAGLU	4669	broad.mit.edu	37	17	40695514	40695514	+	Missense_Mutation	SNP	T	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:40695514T>A	uc002hzv.2	+	6	1830	c.1490T>A	c.(1489-1491)CTG>CAG	p.L497Q		NM_000263	NP_000254	P54802	ANAG_HUMAN	alpha-N-acetylglucosaminidase precursor	497						lysosome	alpha-N-acetylglucosaminidase activity				0		all_cancers(22;1.58e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)	N-Acetyl-D-glucosamine(DB00141)	TGGAGGCTACTGCTCCGGAGT	0.657000													3	13					0	0	0.000248	0	0
CNTNAP1	8506	broad.mit.edu	37	17	40837275	40837275	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:40837275C>T	uc002iay.2	+	5	768	c.552C>T	c.(550-552)TCC>TCT	p.S184S	CNTNAP1_uc010wgs.1_RNA	NM_003632	NP_003623	P78357	CNTP1_HUMAN	contactin associated protein 1 precursor	184	Extracellular (Potential).				axon guidance|cell adhesion	paranode region of axon	receptor activity|receptor binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(3)|breast(3)|upper_aerodigestive_tract(1)|lung(1)	8		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.143)		ATGCCATCTCCTACCGCTTCC	0.652000													19	43					0	0	0.001882	0	0
KIF2B	84643	broad.mit.edu	37	17	51900577	51900577	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:51900577G>A	uc002iua.2	+	1	339	c.183G>A	c.(181-183)GTG>GTA	p.V61V		NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	61					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						TAGAGTGGGTGGAGAAAGCAG	0.557000													36	79					0	0	0.004289	0	0
PRR11	55771	broad.mit.edu	37	17	57262485	57262485	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:57262485C>T	uc002ixf.1	+	3	278	c.199C>T	c.(199-201)CCT>TCT	p.P67S	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	67										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					CTTCAATTTTCCTAACATCAG	0.373000													24	72					0	0	0.003330	0	0
MRC2	9902	broad.mit.edu	37	17	60769493	60769493	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:60769493C>T	uc002jad.2	+	29	4615	c.4213C>T	c.(4213-4215)CCA>TCA	p.P1405S	MRC2_uc002jae.2_Missense_Mutation_p.P476S|MRC2_uc002jaf.2_Missense_Mutation_p.P271S	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1405	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						CAGCTTCTCCCCATCAGGTGA	0.547000													20	46					0	0	0.002780	0	0
WIPI1	55062	broad.mit.edu	37	17	66440649	66440649	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:66440649G>A	uc010dey.2	-	4	506	c.415C>T	c.(415-417)CCT>TCT	p.P139S	WIPI1_uc002jhd.3_RNA|WIPI1_uc010wqo.1_Missense_Mutation_p.P57S|WIPI1_uc002jhe.3_RNA	NM_017983	NP_060453	Q5MNZ9	WIPI1_HUMAN	WD repeat domain, phosphoinositide interacting	139					macroautophagy|vesicle targeting, trans-Golgi to endosome	autophagic vacuole membrane|clathrin-coated vesicle|cytosol|endosome membrane|PAS complex|pre-autophagosomal structure membrane|trans-Golgi network	androgen receptor binding|estrogen receptor binding|phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding				0						GGGTTTGCAGGAATATCCAGG	0.418000													25	47					0	0	0.007291	0	0
ABCA8	10351	broad.mit.edu	37	17	66925340	66925340	+	Silent	SNP	C	T	T	rs143207789	by1000genomes	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:66925340C>T	uc002jhp.2	-	8	1154	c.975G>A	c.(973-975)AAG>AAA	p.K325K	ABCA8_uc002jhq.2_Silent_p.K325K|ABCA8_uc010wqq.1_Silent_p.K325K|ABCA8_uc010wqr.1_Silent_p.K264K|ABCA8_uc002jhr.2_Silent_p.K325K	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	325						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GGAAAGATTTCTTTACCAAGA	0.418000													18	20					0	0	0.001882	0	0
ABCA10	10349	broad.mit.edu	37	17	67148207	67148207	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:67148207G>A	uc010dfa.1	-	37	5253	c.4374C>T	c.(4372-4374)TTC>TTT	p.F1458F	ABCA10_uc002jhz.2_5'Flank|ABCA10_uc010wqs.1_Silent_p.F450F|ABCA10_uc010wqt.1_RNA	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	1458					transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					CAGCCTGTGGGAAAAGCTTCA	0.378000													25	81					0	0	0.005443	0	0
TMEM104	54868	broad.mit.edu	37	17	72815924	72815924	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:72815924C>T	uc002jls.3	+	9	834	c.672C>T	c.(670-672)TTC>TTT	p.F224F	TMEM104_uc010wrf.1_Silent_p.F224F|TMEM104_uc010wrg.1_Silent_p.F237F|TMEM104_uc010dfx.2_Silent_p.F224F	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	224	Helical; (Potential).					integral to membrane					0	all_lung(278;0.23)					CGTTCACCTTCTTTGACGTCC	0.557000													21	67					0	0	0.002299	0	0
MGAT5B	146664	broad.mit.edu	37	17	74922712	74922712	+	Silent	SNP	G	A	A	rs144217759		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr17:74922712G>A	uc002jti.2	+	9	1327	c.1224G>A	c.(1222-1224)ACG>ACA	p.T408T	MGAT5B_uc002jth.2_Silent_p.T397T	NM_198955	NP_945193	Q3V5L5	MGT5B_HUMAN	N-acetylglucosaminyltranferase VB isoform 2	397	Lumenal (Potential).					Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						CCTTCGGGACGGAACCTGCGT	0.622000													11	32					0	0	0.008291	0	0
LAMA1	284217	broad.mit.edu	37	18	6962005	6962005	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr18:6962005G>A	uc002knm.2	-	52	7485	c.7391C>T	c.(7390-7392)TCC>TTC	p.S2464F	LAMA1_uc002knl.2_5'UTR|LAMA1_uc010wzj.1_Missense_Mutation_p.S1940F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2464	Laminin G-like 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGTTGATCTGGATATTTCCAG	0.393000													40	90					0	0	0.002522	0	0
TCEB3C	162699	broad.mit.edu	37	18	44555184	44555186	+	Missense_Mutation	TNP	CCC	TTT	TTT			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr18:44555184_44555186CCC>TTT	uc010xdb.1	-	1	1264_1266	c.1028_1030GGG>AAA	c.(1027-1032)CGGGTG>CAAATG	p.343_344RV>QM	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_145653	NP_663628	Q8NG57	ELOA3_HUMAN	transcription elongation factor B polypeptide	343_344	Interaction with elongin BC (By similarity).|Activation domain (By similarity).				regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane|nucleus	DNA binding				0						TTCCTAGGCACCCGGAGGCACTG	0.655000													23	436					0	0	0.004672	0	0
TNFRSF11A	8792	broad.mit.edu	37	18	60015474	60015474	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr18:60015474G>A	uc002lin.2	+	2	187	c.149G>A	c.(148-150)TGT>TAT	p.C50Y	TNFRSF11A_uc010dpv.2_Missense_Mutation_p.C50Y	NM_003839	NP_003830	Q9Y6Q6	TNR11_HUMAN	tumor necrosis factor receptor superfamily,	50	TNFR-Cys 1.|Extracellular (Potential).				adaptive immune response|cell-cell signaling|circadian temperature homeostasis|monocyte chemotaxis|osteoclast differentiation|positive regulation of cell proliferation|positive regulation of ERK1 and ERK2 cascade via TNFSF11-mediated signaling|positive regulation of fever generation by positive regulation of prostaglandin secretion|positive regulation of JUN kinase activity|positive regulation of NF-kappaB transcription factor activity|response to interleukin-1|response to lipopolysaccharide	external side of plasma membrane|integral to membrane	metal ion binding|tumor necrosis factor receptor activity			breast(2)|lung(1)	3		Colorectal(73;0.188)				TGTAACAAATGTGAACCAGGT	0.463000									Paget_Disease_of_Bone				23	35					0	0	0.003330	0	0
NETO1	81832	broad.mit.edu	37	18	70423306	70423306	+	Missense_Mutation	SNP	C	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr18:70423306C>G	uc002lkw.2	-	8	1229	c.945G>C	c.(943-945)CAG>CAC	p.Q315H	NETO1_uc002lkx.1_Missense_Mutation_p.Q314H|NETO1_uc002lky.1_Missense_Mutation_p.Q315H	NM_138966	NP_620416	Q8TDF5	NETO1_HUMAN	neuropilin- and tolloid-like protein 1 isoform 3	315	LDL-receptor class A.|Extracellular (Potential).				memory|regulation of long-term neuronal synaptic plasticity|visual learning	cell junction|excitatory synapse|extracellular region|integral to membrane|postsynaptic density|postsynaptic membrane	receptor activity			ovary(2)|skin(2)	4		Esophageal squamous(42;0.129)		READ - Rectum adenocarcinoma(1;0.0487)		ACACACAGTTCTGGAGTCCAT	0.373000													16	54					0	0	0.002299	0	0
CELF5	60680	broad.mit.edu	37	19	3224881	3224881	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:3224881C>T	uc002lxm.2	+	1	181	c.144C>T	c.(142-144)TTC>TTT	p.F48F	CELF5_uc002lxl.1_Silent_p.F48F|CELF5_uc010dtj.1_Silent_p.F48F|CELF5_uc010xhg.1_5'Flank	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	48	RRM 1.				mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						TCAAACTCTTCGTGGGCCAGA	0.687000													7	16					0	0	0.003080	0	0
KANK3	256949	broad.mit.edu	37	19	8389978	8389978	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:8389978C>T	uc010dwa.2	-	8	2005	c.1939G>A	c.(1939-1941)GCC>ACC	p.A647T		NM_198471	NP_940873	Q6NY19	KANK3_HUMAN	ankyrin repeat domain 47	647	ANK 1.										0						ACCTCGCAGGCCCCTGGGAGA	0.642000													8	32					0	0	0.003080	0	0
MUC16	94025	broad.mit.edu	37	19	9046738	9046738	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:9046738C>T	uc002mkp.2	-	5	35097	c.34893G>A	c.(34891-34893)GTG>GTA	p.V11631V		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11633	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGTGAGGTCACTACCCCTG	0.527000													39	75					0	0	0.005524	0	0
MUC16	94025	broad.mit.edu	37	19	9085586	9085586	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:9085586G>A	uc002mkp.2	-	1	6433	c.6229C>T	c.(6229-6231)CAT>TAT	p.H2077Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2077	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACCCCAGAATGGCCTGAGGAC	0.468000													60	119					0	0	0.003610	0	0
OR7D2	162998	broad.mit.edu	37	19	9296742	9296742	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:9296742G>A	uc002mkz.1	+	1	473	c.285G>A	c.(283-285)ATG>ATA	p.M95I		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	95	Extracellular (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						TCTCCTACATGGACTGCCTCA	0.517000													30	104					0	0	0.002836	0	0
OR7C2	26658	broad.mit.edu	37	19	15053193	15053193	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:15053193G>A	uc010xoc.1	+	1	893	c.893G>A	c.(892-894)GGG>GAG	p.G298E		NM_012377	NP_036509	O60412	OR7C2_HUMAN	olfactory receptor, family 7, subfamily C,	298	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	Ovarian(108;0.203)					GACATGAAGGGGTCACTGGGG	0.542000													18	71					0	0	0.004990	0	0
BRD4	23476	broad.mit.edu	37	19	15383775	15383775	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:15383775G>A	uc002nar.2	-	2	358	c.136C>T	c.(136-138)CCG>TCG	p.P46S	BRD4_uc002nas.2_Missense_Mutation_p.P46S|BRD4_uc002nat.3_Missense_Mutation_p.P46S|BRD4_uc002nau.3_Missense_Mutation_p.P46S	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	46					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			TCTGGGGGCGGGGGGTTGGTG	0.557000			T	NUT|C15orf55	lethal midline carcinoma of young people								48	128					0	0	0.003610	0	0
CILP2	148113	broad.mit.edu	37	19	19655800	19655800	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:19655800G>A	uc002nmv.3	+	8	2531	c.2446G>A	c.(2446-2448)GAG>AAG	p.E816K	CILP2_uc002nmw.3_Missense_Mutation_p.E822K	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	816						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CCTGGGCGGCGAGGAGCTGGA	0.746000													11	10					0	0	0.008291	0	0
ZNF302	55900	broad.mit.edu	37	19	35176128	35176128	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:35176128C>T	uc002nvr.1	+	6	1581	c.1318C>T	c.(1318-1320)CCG>TCG	p.P440S	ZNF302_uc002nvp.1_Missense_Mutation_p.P396S|ZNF302_uc002nvq.1_Missense_Mutation_p.P396S|ZNF302_uc002nvs.1_Missense_Mutation_p.P396S	NM_018443	NP_060913	Q9NR11	ZN302_HUMAN	zinc finger protein 302	475					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;6.16e-07)|Lung NSC(56;9.71e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TGAAGAAAAACCGTTTGAAGT	0.338000													12	44					0	0	0.000978	0	0
FCGBP	8857	broad.mit.edu	37	19	40411698	40411698	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:40411698C>T	uc002omp.3	-	7	3938	c.3930G>A	c.(3928-3930)GTG>GTA	p.V1310V		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1310	VWFD 3.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGACCGTGATCACCCTGGTCA	0.652000													37	70					0	0	0.003610	0	0
PSG9	5678	broad.mit.edu	37	19	43763198	43763198	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:43763198C>T	uc002owd.3	-	4	898	c.799G>A	c.(799-801)GAG>AAG	p.E267K	PSG9_uc002owe.3_Intron|PSG9_uc010xwm.1_Missense_Mutation_p.E174K|PSG9_uc002owf.3_Intron|PSG9_uc002owg.2_Intron|PSG9_uc002owh.2_Intron	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	267	Ig-like C2-type 2.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GTGTAGTTCTCACTCTTAGGT	0.498000													85	185					0	0	0.003610	0	0
CCDC61	729440	broad.mit.edu	37	19	46511402	46511402	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:46511402C>T	uc002pdw.2	+	6	565	c.565C>T	c.(565-567)CAC>TAC	p.H189Y		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		CCTCAGGATTCACTACCCGCT	0.587000													8	18					0	0	0.003080	0	0
MEIS3	56917	broad.mit.edu	37	19	47910355	47910355	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:47910355G>A	uc002pgu.2	-	10	1422	c.975C>T	c.(973-975)ATC>ATT	p.I325I	MEIS3_uc010xyp.1_RNA|MEIS3_uc002pgo.2_Silent_p.I124I|MEIS3_uc002pgp.2_Silent_p.I157I|MEIS3_uc002pgq.2_Silent_p.I406I|MEIS3_uc002pgr.2_Silent_p.I193I|MEIS3_uc002pgt.2_Silent_p.I308I|MEIS3_uc002pgv.2_Silent_p.I354I|MEIS3_uc002pgs.2_Silent_p.I371I|MEIS3_uc010eld.2_Silent_p.I371I	NM_001009813	NP_001009813	Q99687	MEIS3_HUMAN	Meis1, myeloid ecotropic viral integration site	325						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(25;1.65e-09)|all_epithelial(76;9.95e-08)|all_lung(116;7.27e-07)|Lung NSC(112;1.6e-06)|Ovarian(192;0.0139)|all_neural(266;0.026)|Breast(70;0.0503)		all cancers(93;0.000198)|OV - Ovarian serous cystadenocarcinoma(262;0.000439)|Epithelial(262;0.0113)|GBM - Glioblastoma multiforme(486;0.0223)		TGGATTGATCGATCATAGGTT	0.612000													8	32					0	0	0.006214	0	0
RCN3	57333	broad.mit.edu	37	19	50040373	50040373	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:50040373C>T	uc002poj.2	+	4	976	c.529C>T	c.(529-531)CAG>TAG	p.Q177*		NM_020650	NP_065701	Q96D15	RCN3_HUMAN	reticulocalbin 3, EF-hand calcium binding domain	177	EF-hand 3.|3; possibly ancestral (Potential).					endoplasmic reticulum lumen	calcium ion binding|protein binding			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00295)|GBM - Glioblastoma multiforme(134;0.0159)		GGTGGCCGACCAGGATGGGGA	0.602000													52	129					0	0	0.003610	0	0
MIR519E	574463	broad.mit.edu	37	19	54183226	54183226	+	RNA	SNP	T	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr19:54183226T>C	hsa-mir-519e|MI0003145	+			c.33T>C			MIR520F_hsa-mir-520f|MI0003146_5'Flank																	0						AGGGAGCACTTTCTGTTTGAA	0.398000													12	26					0	0	0.001855	0	0
SOX11	6664	broad.mit.edu	37	2	5833922	5833922	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:5833922G>A	uc002qyj.2	+	1	1124	c.1069G>A	c.(1069-1071)GAC>AAC	p.D357N		NM_003108	NP_003099	P35716	SOX11_HUMAN	SRY-box 11	357					cardiac ventricle formation|closure of optic fissure|cornea development in camera-type eye|embryonic digestive tract morphogenesis|embryonic skeletal system morphogenesis|eyelid development in camera-type eye|glial cell proliferation|hard palate development|lens morphogenesis in camera-type eye|limb bud formation|lung morphogenesis|negative regulation of cell death|negative regulation of glial cell proliferation|negative regulation of lymphocyte proliferation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription regulatory region DNA binding|neural crest cell development|neural tube formation|neuroepithelial cell differentiation|noradrenergic neuron differentiation|outflow tract morphogenesis|positive regulation of BMP signaling pathway|positive regulation of hippo signaling cascade|positive regulation of hormone secretion|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of ossification|positive regulation of osteoblast differentiation|positive regulation of stem cell proliferation|regulation of transforming growth factor beta receptor signaling pathway|signal transduction involved in G1/S transition checkpoint|soft palate development|somite development|spinal cord development|sympathetic nervous system development|ventricular septum morphogenesis	cytoplasm|nucleolus	enhancer sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|RNA polymerase II transcription coactivator activity|translation factor activity, nucleic acid binding			central_nervous_system(3)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.191)			OV - Ovarian serous cystadenocarcinoma(76;0.132)		cagcggcGAGGACGCCGACGA	0.488000													4	4					0	0	0.000248	0	0
APOB	338	broad.mit.edu	37	2	21230262	21230262	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:21230262C>T	uc002red.2	-	26	9606	c.9478G>A	c.(9478-9480)GAA>AAA	p.E3160K		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3160					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTCAAGAATTCCTTCAAGCCT	0.358000													135	405					0	0	0.003610	0	0
ADCY3	109	broad.mit.edu	37	2	25057785	25057785	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:25057785G>A	uc002rfs.3	-	9	1882	c.1683C>T	c.(1681-1683)CCC>CCT	p.P561P	ADCY3_uc002rfr.3_Silent_p.P194P|ADCY3_uc010ykm.1_Silent_p.P561P	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	561	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					GGCGTGGGTTGGGGAATGAGG	0.642000													11	22					0	0	0.001368	0	0
TCF23	150921	broad.mit.edu	37	2	27372192	27372192	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:27372192G>A	uc010ylg.1	+	1	191	c.191G>A	c.(190-192)GGG>GAG	p.G64E		NM_175769	NP_786951	Q7RTU1	TCF23_HUMAN	transcription factor 23	64					cell differentiation|muscle organ development|regulation of transcription, DNA-dependent	nucleus					0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCCCTCGAGGGACCAGGGCT	0.632000													3	7					0	0	0.004672	0	0
IFT172	26160	broad.mit.edu	37	2	27706224	27706224	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:27706224G>A	uc002rku.2	-	7	553	c.502C>T	c.(502-504)CTC>TTC	p.L168F	IFT172_uc002rkw.2_Missense_Mutation_p.L168F|IFT172_uc010yls.1_Missense_Mutation_p.L147F|IFT172_uc010ezc.2_Missense_Mutation_p.L168F|IFT172_uc002rkv.2_Missense_Mutation_p.L168F	NM_015662	NP_056477	Q9UG01	IF172_HUMAN	selective LIM binding factor homolog	168	WD 4.				cilium assembly	cilium	binding			large_intestine(1)|ovary(1)	2	Acute lymphoblastic leukemia(172;0.155)					TGACCAGAGAGAATTCCTTTC	0.408000													16	56					0	0	0.006122	0	0
NLRC4	58484	broad.mit.edu	37	2	32461352	32461352	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:32461352G>A	uc002roi.2	-	7	2824	c.2578C>T	c.(2578-2580)CTG>TTG	p.L860L	NLRC4_uc002roj.1_Silent_p.L860L|NLRC4_uc010ezt.1_Silent_p.L195L	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	860	LRR 9.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TCTTTTTCCAGGTAATTTTCT	0.318000													16	47					0	0	0.004990	0	0
LTBP1	4052	broad.mit.edu	37	2	33505184	33505184	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:33505184C>T	uc002ros.2	+	19	3074	c.3074C>T	c.(3073-3075)CCC>CTC	p.P1025L	LTBP1_uc002rot.2_Missense_Mutation_p.P699L|LTBP1_uc002rou.2_Missense_Mutation_p.P698L|LTBP1_uc002rov.2_Missense_Mutation_p.P645L|LTBP1_uc010ymz.1_Missense_Mutation_p.P698L|LTBP1_uc010yna.1_Missense_Mutation_p.P645L	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	1024	EGF-like 7; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				CAGTGCGTTCCCTGCACAGAA	0.423000													18	47					0	0	0.006122	0	0
FSHR	2492	broad.mit.edu	37	2	49190690	49190690	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:49190690G>A	uc002rww.2	-	10	1344	c.1270C>T	c.(1270-1272)CAT>TAT	p.H424Y	FSHR_uc002rwx.2_Missense_Mutation_p.H362Y|FSHR_uc010fbn.2_Missense_Mutation_p.H398Y	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	424	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CTCTTGGTATGGATATCAACT	0.478000									Gonadal_Dysgenesis_46_XX				11	52					0	0	0.000978	0	0
GGCX	2677	broad.mit.edu	37	2	85777220	85777220	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:85777220T>C	uc002sps.2	-	15	2220	c.2114A>G	c.(2113-2115)AAT>AGT	p.N705S	GGCX_uc010yss.1_Missense_Mutation_p.N521S|GGCX_uc010yst.1_Missense_Mutation_p.N648S	NM_000821	NP_000812	P38435	VKGC_HUMAN	gamma-glutamyl carboxylase isoform 1	705	Lumenal (Potential).				blood coagulation|peptidyl-glutamic acid carboxylation|post-translational protein modification	endoplasmic reticulum membrane|integral to membrane|membrane fraction	gamma-glutamyl carboxylase activity			ovary(1)	1					Anisindione(DB01125)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Drotrecogin alfa(DB00055)|L-Glutamic Acid(DB00142)|Menadione(DB00170)|Phytonadione(DB01022)	TAATATCAGATTTCGAAGTGA	0.463000													17	45					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	2	90121877	90121877	+	RNA	SNP	C	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:90121877C>A	uc010fhm.2	+	16		c.1746C>A								Parts of antibodies, mostly variable regions.																		TCTCCATCTGCCATGTCTGCA	0.448000													50	146					6.3008e-33	7.0389e-33	0.003610	1	0
ZNF514	84874	broad.mit.edu	37	2	95815791	95815791	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:95815791G>A	uc002sue.1	-	5	813	c.439C>T	c.(439-441)CTT>TTT	p.L147F	ZNF514_uc002sud.1_Missense_Mutation_p.L220F	NM_032788	NP_116177	Q96K75	ZN514_HUMAN	zinc finger protein 514	147					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCTGCTAAGGGTGGTGGCA	0.428000													29	79					0	0	0.008361	0	0
AFF3	3899	broad.mit.edu	37	2	100623390	100623390	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:100623390G>A	uc002tag.2	-	6	813	c.577C>T	c.(577-579)CTT>TTT	p.L193F	AFF3_uc002taf.2_Missense_Mutation_p.L218F|AFF3_uc010fiq.1_Missense_Mutation_p.L193F|AFF3_uc010yvr.1_Missense_Mutation_p.L347F|AFF3_uc002tah.1_Missense_Mutation_p.L218F|AFF3_uc010fir.1_Missense_Mutation_p.L270F|AFF3_uc002tai.2_Missense_Mutation_p.L115F	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	193					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						TGGGTCTGAAGGCCCACCTCC	0.577000													26	57					0	0	0.004656	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107460402	107460402	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:107460402C>T	uc002tdq.2	-	2	151	c.32G>A	c.(31-33)CGA>CAA	p.R11Q	ST6GAL2_uc002tdr.2_Missense_Mutation_p.R11Q|ST6GAL2_uc002tds.3_Missense_Mutation_p.R11Q	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	11	Cytoplasmic (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						GAAAAGCATTCGTTGTCTCCA	0.507000													20	49					0	0	0.007413	0	0
RGPD5	84220	broad.mit.edu	37	2	113127775	113127775	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:113127775G>C	uc002ths.1	-	23	5355	c.5278C>G	c.(5278-5280)CCT>GCT	p.P1760A	RGPD8_uc010fkk.1_Missense_Mutation_p.P1620A	NM_005054	NP_005045	Q99666	RGPD5_HUMAN	RANBP2-like and GRIP domain containing 5 isoform	1760					intracellular transport	cytoplasm	binding				0						GAACGGGAAGGATTTTCTTCC	0.308000													3	42					0	0	0.004672	0	0
LOC440905	440905	broad.mit.edu	37	2	130792745	130792745	+	RNA	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:130792745G>A	uc002tpz.2	-	8		c.2584C>T				NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						ACAGCTAGTGGGAGATTGACG	0.488000													12	24					0	0	0.000978	0	0
NCKAP5	344148	broad.mit.edu	37	2	133489532	133489532	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:133489532G>A	uc002ttp.2	-	17	5595	c.5221C>T	c.(5221-5223)CAG>TAG	p.Q1741*	NCKAP5_uc002ttq.2_Nonsense_Mutation_p.Q422*	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1741							protein binding				0						GAGTCTGGCTGGCATAGGTAG	0.552000													25	37					0	0	0.003330	0	0
LRP1B	53353	broad.mit.edu	37	2	141777614	141777614	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:141777614G>A	uc002tvj.1	-	12	2819	c.1847C>T	c.(1846-1848)ACC>ATC	p.T616I	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	616	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GCCATCATTGGTCCAGTAAAG	0.398000										TSP Lung(27;0.18)			22	84					0	0	0.003330	0	0
CYTIP	9595	broad.mit.edu	37	2	158272504	158272504	+	Missense_Mutation	SNP	C	T	T	rs140145189	byFrequency	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:158272504C>T	uc002tzj.1	-	8	837	c.765G>A	c.(763-765)ATG>ATA	p.M255I	CYTIP_uc010zcl.1_Missense_Mutation_p.M149I	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	255	Ser-rich.				regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						CTTCACTGTCCATCGTCATGG	0.567000													17	51					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179484829	179484829	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:179484829C>T	uc010zfg.1	-	198	38835	c.38611G>A	c.(38611-38613)GAA>AAA	p.E12871K	TTN_uc010zfh.1_Missense_Mutation_p.E6566K|TTN_uc010zfi.1_Missense_Mutation_p.E6499K|TTN_uc010zfj.1_Missense_Mutation_p.E6374K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13798							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATCTTTTTCAAATTTGTAT	0.363000													28	63					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179576846	179576846	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:179576846G>A	uc010zfg.1	-	93	24203	c.23979C>T	c.(23977-23979)TCC>TCT	p.S7993S	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.S4654S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8920							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTATACCAGGATACCCCAA	0.423000													23	58					0	0	0.002299	0	0
TTN	7273	broad.mit.edu	37	2	179640923	179640923	+	Missense_Mutation	SNP	G	A	A	rs146496197	byFrequency	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:179640923G>A	uc010zfg.1	-	28	5892	c.5668C>T	c.(5668-5670)CGC>TGC	p.R1890C	TTN_uc010zfh.1_Missense_Mutation_p.R1844C|TTN_uc010zfi.1_Missense_Mutation_p.R1844C|TTN_uc010zfj.1_Missense_Mutation_p.R1844C|TTN_uc002unb.2_Missense_Mutation_p.R1890C|uc002unc.1_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	1890							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATCATAGCGAACTCTGAAC	0.498000													70	200					0	0	0.003610	0	0
FAM171B	165215	broad.mit.edu	37	2	187626884	187626884	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:187626884C>T	uc002ups.2	+	8	1927	c.1815C>T	c.(1813-1815)ATC>ATT	p.I605I	FAM171B_uc002upr.1_Silent_p.I572I|FAM171B_uc002upt.2_Silent_p.I74I	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	605	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						AAGAGGATATCATACTTGAAG	0.478000													32	64					0	0	0.001786	0	0
KIAA1486	57624	broad.mit.edu	37	2	226378250	226378250	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:226378250G>A	uc002voe.2	+	3	560	c.385G>A	c.(385-387)GAT>AAT	p.D129N	KIAA1486_uc010fxa.1_Intron	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	129										ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GGGCACAGACGATGACAGCAG	0.572000													21	42					0	0	0.002299	0	0
COL4A3	1285	broad.mit.edu	37	2	228128587	228128587	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:228128587G>A	uc002vom.1	+	21	1404	c.1242G>A	c.(1240-1242)ATG>ATA	p.M414I	COL4A3_uc002von.1_Missense_Mutation_p.M414I|COL4A3_uc002voo.1_Missense_Mutation_p.M414I|COL4A3_uc002vop.1_Missense_Mutation_p.M414I|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	414	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		AGGATGCCATGGGGACTCCTG	0.602000													15	37					0	0	0.002450	0	0
COL4A3	1285	broad.mit.edu	37	2	228137771	228137771	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:228137771G>A	uc002vom.1	+	26	2027	c.1865G>A	c.(1864-1866)GGA>GAA	p.G622E	COL4A3_uc002von.1_Missense_Mutation_p.G622E|COL4A3_uc002voo.1_Missense_Mutation_p.G622E|COL4A3_uc002vop.1_Missense_Mutation_p.G622E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	622	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGACCCCAAGGAGAACCTGGT	0.622000													27	53					0	0	0.004656	0	0
SLC16A14	151473	broad.mit.edu	37	2	230914547	230914547	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:230914547G>A	uc002vqd.1	-	3	696	c.333C>T	c.(331-333)TCC>TCT	p.S111S	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.S111S|SLC16A14_uc002vqf.2_Silent_p.S111S	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	111	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CCCAGCCCAGGGAGTTGACGA	0.488000													30	65					0	0	0.003271	0	0
SP140	11262	broad.mit.edu	37	2	231155263	231155263	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr2:231155263G>A	uc002vql.2	+	19	1924	c.1809G>A	c.(1807-1809)AAG>AAA	p.K603K	SP140_uc010zma.1_RNA|SP140_uc002vqn.2_Silent_p.K489K|SP140_uc002vqm.2_Silent_p.K543K|SP140_uc010fxl.2_Silent_p.K576K	NM_007237	NP_009168	Q13342	LY10_HUMAN	SP140 nuclear body protein isoform 1	603	SAND.				defense response	cytoplasm|nuclear envelope|nucleolus|nucleoplasm	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Renal(207;0.0112)|all_lung(227;0.0221)|Lung NSC(271;0.0977)|all_hematologic(139;0.103)|Acute lymphoblastic leukemia(138;0.167)		Epithelial(121;1.13e-12)|all cancers(144;2.71e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)		TTTTACATAAGAAGAAATTGC	0.408000													20	46					0	0	0.001882	0	0
GPCPD1	56261	broad.mit.edu	37	20	5566885	5566885	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr20:5566885G>A	uc002wme.3	-	5	475	c.262C>T	c.(262-264)CAC>TAC	p.H88Y	GPCPD1_uc002wmd.3_5'Flank	NM_019593	NP_062539	Q9NPB8	GPCP1_HUMAN	hypothetical protein LOC56261	88	CBM20.|Substrate binding (Potential).				glycerol metabolic process|lipid metabolic process		carbohydrate binding|glycerophosphodiester phosphodiesterase activity				0						TCCCACTTGTGAACTATCACT	0.368000													21	85					0	0	0.002780	0	0
DEFB121	245934	broad.mit.edu	37	20	29992835	29992835	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr20:29992835C>T	uc002wvv.1	-	2	148	c.112G>A	c.(112-114)GAA>AAA	p.E38K		NM_001011878	NP_001011878	Q5J5C9	DB121_HUMAN	defensin, beta 121 precursor	38					defense response to bacterium	extracellular region					0	all_hematologic(12;0.158)		Colorectal(19;0.00254)|COAD - Colon adenocarcinoma(19;0.0347)			TAGTATACTTCACTTTCTTTA	0.378000													15	29					0	0	0.004007	0	0
TPX2	22974	broad.mit.edu	37	20	30381768	30381768	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr20:30381768C>T	uc002wwp.1	+	14	2325	c.1627C>T	c.(1627-1629)CGA>TGA	p.R543*	TPX2_uc010gdv.1_Nonsense_Mutation_p.R579*	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	543					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			GTTTGATTCTCGAGACAAAGA	0.418000													34	80					0	0	0.002836	0	0
SLC35C2	51006	broad.mit.edu	37	20	44980726	44980727	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr20:44980726_44980727GG>AA	uc002xro.2	-	8	1341_1342	c.800_801CC>TT	c.(799-801)ACC>ATT	p.T267I	SLC35C2_uc002xrp.2_Missense_Mutation_p.T246I|SLC35C2_uc002xrq.2_Missense_Mutation_p.T267I|SLC35C2_uc002xrr.2_Missense_Mutation_p.T267I|SLC35C2_uc010zxn.1_Missense_Mutation_p.T132I|SLC35C2_uc010zxo.1_Missense_Mutation_p.T153I|SLC35C2_uc010zxp.1_Missense_Mutation_p.T296I	NM_173179	NP_775271	Q9NQQ7	S35C2_HUMAN	solute carrier family 35, member C2 isoform a	267					transport	integral to membrane				ovary(1)	1		Myeloproliferative disorder(115;0.0122)				TGAGGCTGGAGGTTCTGGAGAC	0.584000													11	48					0	0	0.004672	0	0
KCNB1	3745	broad.mit.edu	37	20	47991189	47991189	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr20:47991189C>T	uc002xur.1	-	2	1072	c.908G>A	c.(907-909)CGA>CAA	p.R303Q	KCNB1_uc002xus.1_Missense_Mutation_p.R303Q	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	303	Helical; Voltage-sensor; Name=Segment S4; (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GCGGAGAATTCGCATGATGCG	0.532000													31	55					0	0	0.002445	0	0
EDN3	1908	broad.mit.edu	37	20	57896107	57896107	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr20:57896107G>A	uc002yap.2	+	3	770	c.401G>A	c.(400-402)GGA>GAA	p.G134E	EDN3_uc002yao.1_Missense_Mutation_p.G134E|EDN3_uc002yaq.2_Missense_Mutation_p.G134E|EDN3_uc002yar.2_Missense_Mutation_p.G134E|EDN3_uc002yas.2_Missense_Mutation_p.G134E	NM_000114	NP_000105	P14138	EDN3_HUMAN	endothelin 3 isoform 1 preproprotein	134					cell surface receptor linked signaling pathway|inositol phosphate-mediated signaling|neutrophil chemotaxis|peptide hormone secretion|positive regulation of heart rate|positive regulation of hormone secretion|positive regulation of leukocyte chemotaxis|positive regulation of MAP kinase activity|positive regulation of mitosis|regulation of systemic arterial blood pressure by endothelin|regulation of vasoconstriction|vein smooth muscle contraction	extracellular space|soluble fraction	endothelin B receptor binding|hormone activity			skin(1)	1	all_lung(29;0.0115)					AACTACAGAGGAAGCTTCCGG	0.602000													20	54					0	0	0.008871	0	0
MYO18B	84700	broad.mit.edu	37	22	26164488	26164488	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr22:26164488C>T	uc003abz.1	+	4	855	c.605C>T	c.(604-606)TCC>TTC	p.S202F	MYO18B_uc003aca.1_Missense_Mutation_p.S83F|MYO18B_uc010guy.1_Missense_Mutation_p.S83F|MYO18B_uc010guz.1_Missense_Mutation_p.S83F|MYO18B_uc011aka.1_5'UTR|MYO18B_uc011akb.1_5'Flank	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	202						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCTTGTGGCTCCCAGGCCAGC	0.597000													5	8					0	0	0.001984	0	0
ASCC2	84164	broad.mit.edu	37	22	30221628	30221628	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr22:30221628C>T	uc003agr.2	-	3	328	c.223G>A	c.(223-225)GAT>AAT	p.D75N	ASCC2_uc003ags.2_RNA|ASCC2_uc003agt.2_Missense_Mutation_p.D75N|ASCC2_uc011akr.1_Intron	NM_032204	NP_115580	Q9H1I8	ASCC2_HUMAN	activating signal cointegrator 1 complex subunit	75					regulation of transcription, DNA-dependent|transcription, DNA-dependent						0			OV - Ovarian serous cystadenocarcinoma(5;0.000103)|Epithelial(10;0.0169)|all cancers(5;0.0259)			CAGAATTTATCGTGAGGCAAG	0.502000													34	70					0	0	0.002445	0	0
LIMK2	3985	broad.mit.edu	37	22	31664134	31664134	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr22:31664134C>T	uc003akh.2	+	11	1410	c.1265C>T	c.(1264-1266)CCG>CTG	p.P422L	LIMK2_uc003akg.2_Missense_Mutation_p.P339L|LIMK2_uc003aki.2_Missense_Mutation_p.P176L|LIMK2_uc003akj.2_Missense_Mutation_p.P401L|LIMK2_uc003akk.2_Missense_Mutation_p.P401L|LIMK2_uc011aln.1_Missense_Mutation_p.P339L	NM_005569	NP_005560	P53671	LIMK2_HUMAN	LIM domain kinase 2 isoform 2a	422	Protein kinase.					mitochondrion|nucleus	ATP binding|protein serine/threonine kinase activity|zinc ion binding			ovary(2)	2						CTGCAGGATCCGTTCCCCTGG	0.587000													30	87					0	0	0.003271	0	0
DDX17	10521	broad.mit.edu	37	22	38884057	38884057	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr22:38884057T>C	uc003avy.3	-	12	1614	c.1511A>G	c.(1510-1512)CAC>CGC	p.H504R	DDX17_uc003avw.3_5'UTR|DDX17_uc010gxp.2_5'UTR|DDX17_uc003avx.3_Missense_Mutation_p.H504R	NM_001098504	NP_001091974	Q92841	DDX17_HUMAN	DEAD box polypeptide 17 isoform 3	425	Helicase C-terminal.				RNA processing	nucleus	ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity|RNA-dependent ATPase activity			skin(3)|upper_aerodigestive_tract(1)	4	Melanoma(58;0.0286)					GCCAATACGGTGCACATAATC	0.478000													41	66					0	0	0.008740	0	0
NAGA	4668	broad.mit.edu	37	22	42456971	42456971	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr22:42456971G>A	uc003bbx.2	-	9	1195	c.1058C>T	c.(1057-1059)TCC>TTC	p.S353F	NAGA_uc003bby.2_Missense_Mutation_p.S353F|NAGA_uc003bbw.3_Missense_Mutation_p.S353F	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	353					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						GCCAAGGGAGGAGTGGTAGCG	0.557000													20	63					0	0	0.002299	0	0
CNTN4	152330	broad.mit.edu	37	3	2787249	2787249	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:2787249C>T	uc003bpc.2	+	5	447	c.226C>T	c.(226-228)CGC>TGC	p.R76C	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.R76C	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	76	Ig-like C2-type 1.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		TATGGATTTCCGCTACAGTGT	0.383000													27	91					0	0	0.007291	0	0
IRAK2	3656	broad.mit.edu	37	3	10254984	10254984	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:10254984G>A	uc003bve.1	+	5	698	c.622G>A	c.(622-624)GAT>AAT	p.D208N		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	208					activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						CCAGGCAACCGATGACTTCAA	0.522000													19	56					0	0	0.006122	0	0
LSM3	27258	broad.mit.edu	37	3	14239547	14239547	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:14239547G>A	uc003byn.2	+	4	269	c.240G>A	c.(238-240)CGG>CGA	p.R80R	uc003byo.1_5'Flank	NM_014463	NP_055278	P62310	LSM3_HUMAN	Lsm3 protein	80					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	catalytic step 2 spliceosome|cytosol	protein binding|RNA binding			ovary(1)	1						CAACGAAACGGAATATTCCAA	0.398000													15	51					0	0	0.003163	0	0
XIRP1	165904	broad.mit.edu	37	3	39226585	39226585	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:39226585T>C	uc003cjk.1	-	2	4573	c.4352A>G	c.(4351-4353)GAA>GGA	p.E1451G	XIRP1_uc003cji.2_3'UTR|XIRP1_uc003cjj.2_Missense_Mutation_p.E134G	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	1451							actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		GTGGGAACCTTCCATGGGCTG	0.622000													37	120					0	0	0.007835	0	0
NKTR	4820	broad.mit.edu	37	3	42680879	42680879	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:42680879C>T	uc003clo.2	+	13	3830	c.3683C>T	c.(3682-3684)CCC>CTC	p.P1228L	NKTR_uc003clm.1_Missense_Mutation_p.P975L|NKTR_uc003clp.2_Missense_Mutation_p.P975L|NKTR_uc011azp.1_Intron|NKTR_uc003clq.1_Missense_Mutation_p.P1118L|NKTR_uc003clr.1_Missense_Mutation_p.P975L|NKTR_uc003cls.2_Missense_Mutation_p.P928L	NM_005385	NP_005376	P30414	NKTR_HUMAN	natural killer-tumor recognition sequence	1228					protein folding	membrane	cyclosporin A binding|peptidyl-prolyl cis-trans isomerase activity			ovary(2)|skin(1)	3				KIRC - Kidney renal clear cell carcinoma(284;0.24)		AAATGGAAGCCCCTGCAAGGT	0.527000													18	66					0	0	0.008871	0	0
ZNF35	7584	broad.mit.edu	37	3	44700266	44700266	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:44700266C>T	uc003cnq.2	+	4	632	c.411C>T	c.(409-411)ATC>ATT	p.I137I	ZNF35_uc003cnr.2_5'UTR	NM_003420	NP_003411	P13682	ZNF35_HUMAN	zinc finger protein 35	137	Globular domain.				cellular response to retinoic acid|spermatogenesis	nucleus|perinuclear region of cytoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(412;0.0228)		OV - Ovarian serous cystadenocarcinoma(275;2.49e-27)|KIRC - Kidney renal clear cell carcinoma(197;0.0475)|Kidney(197;0.0595)		AACCCCTCATCATATCAGAAA	0.393000													17	49					0	0	0.004990	0	0
FBXW12	285231	broad.mit.edu	37	3	48415089	48415089	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:48415089G>A	uc003csr.2	+	4	366	c.180G>A	c.(178-180)CTG>CTA	p.L60L	FBXW12_uc010hjv.2_Silent_p.L41L|FBXW12_uc003css.2_Silent_p.L60L|FBXW12_uc010hjw.2_Intron	NM_207102	NP_996985	Q6X9E4	FBW12_HUMAN	F-box and WD repeat domain containing 12 isoform	60											0				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ATCAACACCTGGGCACACACA	0.473000													13	62					0	0	0.001855	0	0
COL7A1	1294	broad.mit.edu	37	3	48610350	48610351	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:48610350_48610351GG>AA	uc003ctz.2	-	86	6776_6777	c.6775_6776CC>TT	c.(6775-6777)CCA>TTA	p.P2259L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2259	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		ATCTCGACCTGGGGCTCCCGGC	0.634000													21	44					0	0	0.004672	0	0
VPRBP	9730	broad.mit.edu	37	3	51440680	51440680	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:51440680G>A	uc003dbe.1	-	23	4530	c.4362C>T	c.(4360-4362)TTC>TTT	p.F1454F	VPRBP_uc003dbf.1_Silent_p.F730F	NM_014703	NP_055518	Q9Y4B6	VPRBP_HUMAN	HIV-1 Vpr binding protein	1454	Asp/Glu-rich (acidic).|Interaction with NF2.				interspecies interaction between organisms	cytoplasm|nucleus	protein binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.000272)|Kidney(197;0.000729)|KIRC - Kidney renal clear cell carcinoma(197;0.000875)		CAGAGGGAGAGAAGTCATTGT	0.517000													9	17					0	0	0.004482	0	0
IQCF1	132141	broad.mit.edu	37	3	51928965	51928965	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:51928965A>T	uc003dbv.2	-	4	657	c.559T>A	c.(559-561)TTG>ATG	p.L187M	IQCF1_uc003dbq.3_Intron	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	187										ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		GAGTCCAGCAAGATCTCCAGC	0.527000													39	69					0	0	0.004289	0	0
MYH15	22989	broad.mit.edu	37	3	108183656	108183656	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:108183656C>T	uc003dxa.1	-	16	1677	c.1620G>A	c.(1618-1620)ATG>ATA	p.M540I		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	540	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						AAAGGATGCCCATTGGCTGTT	0.423000													25	52					0	0	0.003330	0	0
ZBED2	79413	broad.mit.edu	37	3	111312580	111312580	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:111312580C>T	uc003dxy.2	-	2	1354	c.469G>A	c.(469-471)GAA>AAA	p.E157K	CD96_uc003dxv.2_Intron|CD96_uc003dxw.2_Intron|CD96_uc003dxx.2_Intron|CD96_uc010hpy.1_Intron	NM_024508	NP_078784	Q9BTP6	ZBED2_HUMAN	zinc finger, BED domain containing 2	157							DNA binding|metal ion binding			skin(1)	1						ACCTCCTTTTCCCTTTGGCTG	0.627000													28	73					0	0	0.001786	0	0
C3orf37	56941	broad.mit.edu	37	3	129007776	129007776	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:129007776C>T	uc003elt.2	+	3	351	c.263C>T	c.(262-264)TCC>TTC	p.S88F	C3orf37_uc003elu.2_Missense_Mutation_p.S88F|C3orf37_uc003elv.2_Missense_Mutation_p.S88F|C3orf37_uc003elw.2_Missense_Mutation_p.S88F	NM_020187	NP_064572	Q96FZ2	CC037_HUMAN	hypothetical protein LOC56941	88										ovary(1)	1						AGTGATCCTTCCAAGCTGCAG	0.488000													20	67					0	0	0.001882	0	0
COL6A6	131873	broad.mit.edu	37	3	130345357	130345357	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:130345357G>A	uc010htl.2	+	24	4938	c.4907G>A	c.(4906-4908)GGA>GAA	p.G1636E	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1636	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GGAGAAAAAGGAGCTGTTGGC	0.418000													26	73					0	0	0.008361	0	0
DZIP1L	199221	broad.mit.edu	37	3	137787113	137787114	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:137787113_137787114GG>AA	uc003erq.2	-	13	2074_2075	c.1711_1712CC>TT	c.(1711-1713)CCA>TTA	p.P571L		NM_173543	NP_775814	Q8IYY4	DZI1L_HUMAN	DAZ interacting protein 1-like	571						intracellular	zinc ion binding			ovary(1)|pancreas(1)	2						ACGAGTTGGTGGGGGTGGCTCT	0.663000													194	541					0	0	0.004672	0	0
ZIC4	84107	broad.mit.edu	37	3	147108847	147108847	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:147108847G>A	uc003ewd.1	-	4	1148	c.875C>T	c.(874-876)CCG>CTG	p.P292L	ZIC4_uc003ewc.1_Missense_Mutation_p.P222L|ZIC4_uc011bno.1_Missense_Mutation_p.P342L	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	292						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						GCTGGGCGGCGGCGAGCGCCC	0.672000													20	39					0	0	0.002299	0	0
P2RY14	9934	broad.mit.edu	37	3	150931772	150931772	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:150931772G>A	uc003eyr.1	-	3	811	c.333C>T	c.(331-333)TTC>TTT	p.F111F	MED12L_uc011bnz.1_Intron|MED12L_uc003eyp.2_Intron|P2RY14_uc003eys.1_Silent_p.F111F	NM_001081455	NP_001074924	Q15391	P2Y14_HUMAN	P2Y14 receptor	111	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled|UDP-activated nucleotide receptor activity			large_intestine(2)|ovary(1)|lung(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TGAGCCCAAAGAACACAATGC	0.463000													13	36					0	0	0.001855	0	0
IGSF10	285313	broad.mit.edu	37	3	151165605	151165605	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:151165605G>A	uc011bod.1	-	4	2164	c.2164C>T	c.(2164-2166)CGG>TGG	p.R722W		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	722					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GTTAATTCCCGATAGTTGTGC	0.493000													17	51					0	0	0.004990	0	0
ZBBX	79740	broad.mit.edu	37	3	166960418	166960418	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:166960418C>T	uc003fep.2	-	20	2474	c.2151G>A	c.(2149-2151)AAG>AAA	p.K717K	ZBBX_uc011bpc.1_Silent_p.K756K|ZBBX_uc003feq.2_Silent_p.K688K	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	717	Potential.					intracellular	zinc ion binding			ovary(2)	2						AGCTGTAAAGCTTTTCTGAAG	0.353000													10	30					0	0	0.006214	0	0
FGF12	2257	broad.mit.edu	37	3	192125997	192125997	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:192125997C>T	uc003fsx.2	-	1	842	c.16G>A	c.(16-18)GCC>ACC	p.A6T	FGF12_uc003fsy.2_Intron	NM_021032	NP_066360	P61328	FGF12_HUMAN	fibroblast growth factor 12 isoform 1	6					cell-cell signaling|heart development|JNK cascade|nervous system development|signal transduction	extracellular space|nucleus	growth factor activity|heparin binding			ovary(1)|skin(1)|lung(1)|pancreas(1)	4	all_cancers(143;1.72e-08)|Ovarian(172;0.0634)|Breast(254;0.247)	Lung NSC(153;0.21)	LUSC - Lung squamous cell carcinoma(58;5.45e-06)|Lung(62;6.17e-06)	GBM - Glioblastoma multiforme(46;0.00032)		AAGGAGCTGGCTATCGCCGCA	0.716000													8	18					0	0	0.006214	0	0
SDHAP2	727956	broad.mit.edu	37	3	195410687	195410687	+	Missense_Mutation	SNP	T	A	A	rs6583274	by1000genomes	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:195410687T>A	uc003fuw.2	+	13	1778	c.584T>A	c.(583-585)GTG>GAG	p.V195E	SDHAP2_uc003fuv.2_RNA					SubName: Full=cDNA FLJ16373 fis, clone THYMU3000269, highly similar to Succinate dehydrogenase (ubiquinone) flavoprotein subunit, mitochondrial (EC 1.3.5.1);												0						CCCTTTGAGGTGCACTGGAGG	0.567000													3	19					0	0	0.000248	0	0
MUC4	4585	broad.mit.edu	37	3	195493597	195493597	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:195493597G>A	uc011bto.1	-	9	13631	c.13171C>T	c.(13171-13173)CCA>TCA	p.P4391S	MUC4_uc003fuz.2_Intron|MUC4_uc003fva.2_5'UTR|MUC4_uc003fvb.2_Intron|MUC4_uc003fvc.2_RNA|MUC4_uc003fvd.2_RNA|MUC4_uc003fve.2_Intron|MUC4_uc010hzr.2_RNA|MUC4_uc011btf.1_5'UTR|MUC4_uc011btg.1_RNA|MUC4_uc011bth.1_Missense_Mutation_p.P83S|MUC4_uc011bti.1_Missense_Mutation_p.P83S|MUC4_uc011btj.1_Missense_Mutation_p.P260S|MUC4_uc011btk.1_5'UTR|MUC4_uc011btl.1_Missense_Mutation_p.P28S|MUC4_uc011btm.1_Missense_Mutation_p.P208S|MUC4_uc011btn.1_5'UTR|MUC4_uc003fvo.2_Missense_Mutation_p.P283S|MUC4_uc003fvp.2_Missense_Mutation_p.P232S|MUC4_uc010hzu.1_Missense_Mutation_p.P1131S	NM_018406	NP_060876	Q99102	MUC4_HUMAN	mucin 4 isoform a	1276	NIDO.				cell-matrix adhesion	integral to plasma membrane|proteinaceous extracellular matrix	ErbB-2 class receptor binding|extracellular matrix constituent, lubricant activity				0	all_cancers(143;1.11e-08)|Ovarian(172;0.0634)|Breast(254;0.206)	Lung NSC(153;0.191)	Epithelial(36;3.72e-24)|all cancers(36;6.22e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.1e-18)|Lung(62;4.65e-05)|LUSC - Lung squamous cell carcinoma(58;5.31e-05)	GBM - Glioblastoma multiforme(46;2.37e-05)		GACATCAGTGGGCTGTTTTCG	0.522000													12	33					0	0	0.003163	0	0
DOK7	285489	broad.mit.edu	37	4	3478206	3478206	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:3478206C>T	uc003ghd.2	+	4	539	c.469C>T	c.(469-471)CTC>TTC	p.L157F	DOK7_uc003ghe.2_Silent_p.T22T	NM_173660	NP_775931	Q18PE1	DOK7_HUMAN	downstream of tyrosine kinase 7 isoform 1	157	IRS-type PTB.				positive regulation of protein tyrosine kinase activity	cell junction|synapse	insulin receptor binding|protein kinase binding			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.163)		GCTGTCTGACCTCCGGCGCTA	0.637000													23	70					0	0	0.002299	0	0
ZBTB49	166793	broad.mit.edu	37	4	4322648	4322648	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:4322648C>T	uc003ghu.2	+	8	2078	c.1903C>T	c.(1903-1905)CAC>TAC	p.H635Y	uc003ghw.2_5'Flank|ZBTB49_uc003ghv.2_Missense_Mutation_p.H118Y|ZBTB49_uc010icy.2_RNA|ZBTB49_uc010icz.2_Missense_Mutation_p.H213Y	NM_145291	NP_660334	Q6ZSB9	ZBT49_HUMAN	zinc finger protein 509	635					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2						ACTCCCTGTCCACCCAGTGGA	0.512000													13	31					0	0	0.001368	0	0
TLR6	10333	broad.mit.edu	37	4	38828821	38828821	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:38828821C>T	uc003gtm.2	-	1	2340	c.2274G>A	c.(2272-2274)CGG>CGA	p.R758R	TLR6_uc010ifg.1_Silent_p.R758R	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	758	TIR.|Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						GCAAATAAGTCCGCTGCGTCA	0.428000													33	100					0	0	0.003755	0	0
PHOX2B	8929	broad.mit.edu	37	4	41747907	41747907	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:41747907C>T	uc003gwf.3	-	3	1222	c.862G>A	c.(862-864)GGG>AGG	p.G288R		NM_003924	NP_003915	Q99453	PHX2B_HUMAN	paired-like homeobox 2b	288					positive regulation of transcription from RNA polymerase II promoter	nuclear chromatin	RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			autonomic_ganglia(7)|lung(2)|ovary(2)|central_nervous_system(1)	12						AAGGGACCCCCAAGCGAATCC	0.562000			Mis|F		neuroblastoma	neuroblastoma	congenital central hypoventilation syndrome		Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				14	42					0	0	0.004990	0	0
ENAM	10117	broad.mit.edu	37	4	71503529	71503529	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:71503529G>A	uc011caw.1	+	8	838	c.557G>A	c.(556-558)GGA>GAA	p.G186E		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	186					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CCAGGTTATGGACGCCCACCA	0.453000													46	120					0	0	0.003610	0	0
ENAM	10117	broad.mit.edu	37	4	71510396	71510396	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:71510396G>A	uc011caw.1	+	9	3534	c.3253G>A	c.(3253-3255)GAT>AAT	p.D1085N		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	1085					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			ATTTGATGGGGATTCAATTAC	0.428000													16	61					0	0	0.004007	0	0
WDFY3	23001	broad.mit.edu	37	4	85695995	85695995	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:85695995G>A	uc003hpd.2	-	29	5140	c.4732C>T	c.(4732-4734)CCT>TCT	p.P1578S		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	1578						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		TTGCTGCTAGGAAAACCTTGC	0.378000													28	65					0	0	0.005443	0	0
WDFY3	23001	broad.mit.edu	37	4	85724537	85724537	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:85724537G>C	uc003hpd.2	-	16	2921	c.2513C>G	c.(2512-2514)TCT>TGT	p.S838C		NM_014991	NP_055806	Q8IZQ1	WDFY3_HUMAN	WD repeat and FYVE domain containing 3 isoform	838						cytoplasmic part|extrinsic to membrane|nuclear envelope	1-phosphatidylinositol binding|metal ion binding|protein binding			ovary(2)|central_nervous_system(1)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000808)		ACTCTGCAGAGATGAAGTTGT	0.458000													7	39					0	0	0.001984	0	0
GRID2	2895	broad.mit.edu	37	4	94436522	94436522	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:94436522C>T	uc011cdt.1	+	13	2411	c.2153C>T	c.(2152-2154)TCG>TTG	p.S718L	GRID2_uc011cdu.1_Missense_Mutation_p.S623L	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	718	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGCAATGGATCGGAGAACAAT	0.468000													14	51					0	0	0.006122	0	0
FAT4	79633	broad.mit.edu	37	4	126239235	126239235	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:126239235C>T	uc003ifj.3	+	1	1669	c.1669C>T	c.(1669-1671)CAG>TAG	p.Q557*		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	557	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGCCCGGGACCAGGGAGTTCA	0.517000											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	22					0	0	0.006122	0	0
FAT4	79633	broad.mit.edu	37	4	126372503	126372503	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:126372503C>T	uc003ifj.3	+	9	10332	c.10332C>T	c.(10330-10332)ATC>ATT	p.I3444I	FAT4_uc011cgp.1_Silent_p.I1742I|FAT4_uc003ifi.1_Silent_p.I922I	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3444	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTTACTTCATCGGATCAGGGA	0.463000													39	83					0	0	0.006999	0	0
SLC10A7	84068	broad.mit.edu	37	4	147204418	147204418	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:147204418C>T	uc010ioz.2	-	10	1028	c.774_splice	c.e10-1	p.R258_splice	SLC10A7_uc003ikr.2_Splice_Site_p.R258_splice|SLC10A7_uc010ipa.2_Splice_Site_p.R245_splice|SLC10A7_uc003iks.2_Splice_Site	NM_001029998	NP_001025169	Q0GE19	NTCP7_HUMAN	solute carrier family 10 (sodium/bile acid							integral to membrane	bile acid:sodium symporter activity				0	all_hematologic(180;0.151)					CGAATTATTCCTAGGGGCAAA	0.343000													12	32					0	0	0.001368	0	0
TTC29	83894	broad.mit.edu	37	4	147830395	147830395	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:147830395C>T	uc003ikw.3	-	5	410	c.183G>A	c.(181-183)AGG>AGA	p.R61R	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Silent_p.R87R|TTC29_uc010ipd.1_Silent_p.R61R	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	61							binding				0	all_hematologic(180;0.151)					TGTAGGAGTTCCTATAACTGG	0.413000													3	11					0	0	0.004672	0	0
DCHS2	54798	broad.mit.edu	37	4	155312345	155312345	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:155312345C>T	uc003inw.2	-	1	105	c.105G>A	c.(103-105)GTG>GTA	p.V35V	DCHS2_uc003inx.2_Intron	NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	35					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AATTTATTTTCACATACACCT	0.229000													8	26					0	0	0.000978	0	0
FGB	2244	broad.mit.edu	37	4	155486961	155486961	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:155486961G>A	uc003ioa.3	+	2	155	c.116G>A	c.(115-117)GGT>GAT	p.G39D	FGB_uc010ipu.1_RNA|FGB_uc003iob.3_Missense_Mutation_p.G36D|FGB_uc010ipv.2_Missense_Mutation_p.G36D|FGB_uc010ipw.2_Missense_Mutation_p.G36D|FGB_uc003ioc.3_Intron	NM_005141	NP_005132	P02675	FIBB_HUMAN	fibrinogen, beta chain preproprotein	39			Missing (in New York-1).		platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen|soluble fraction	chaperone binding|eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|upper_aerodigestive_tract(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Sucralfate(DB00364)	TCCTTGTAGGGTTTCTTCAGT	0.473000													9	43					0	0	0.008291	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156632310	156632310	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:156632310C>T	uc003iov.2	+	7	1529	c.993C>T	c.(991-993)ATC>ATT	p.I331I	GUCY1A3_uc003iou.2_Silent_p.I331I|GUCY1A3_uc010iqc.2_Silent_p.I331I|GUCY1A3_uc003iow.2_Silent_p.I331I|GUCY1A3_uc010iqd.2_Silent_p.I330I|GUCY1A3_uc003iox.2_Silent_p.I331I|GUCY1A3_uc003ioz.2_Silent_p.I96I|GUCY1A3_uc003ioy.2_Silent_p.I331I|GUCY1A3_uc010iqe.2_Silent_p.I96I|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Silent_p.I331I	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	331					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		CTCCAAAAATCAACCAGACGT	0.398000													19	44					0	0	0.007413	0	0
DDX60L	91351	broad.mit.edu	37	4	169354261	169354261	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:169354261A>T	uc003irq.3	-	11	1521	c.1300T>A	c.(1300-1302)TCC>ACC	p.S434T	DDX60L_uc003irr.1_Missense_Mutation_p.S434T|DDX60L_uc003irs.1_Missense_Mutation_p.S161T	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	434							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TTTTCCAAGGAGATTTCTGAA	0.299000													6	13					0	0	0.001168	0	0
GLRA3	8001	broad.mit.edu	37	4	175577931	175577931	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:175577931G>A	uc003ity.1	-	9	1582	c.1079C>T	c.(1078-1080)GCT>GTT	p.A360V	GLRA3_uc003itz.1_Intron	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	360	Cytoplasmic (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	CAGTGCAAAAGCTTCTGTCTG	0.343000													12	11					0	0	0.004007	0	0
DNAH5	1767	broad.mit.edu	37	5	13931251	13931251	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:13931251C>T	uc003jfd.2	-	2	202	c.160G>A	c.(160-162)GAA>AAA	p.E54K	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	54	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCCTCCACTTCGGTTTTGTTC	0.488000									Kartagener_syndrome				17	60					0	0	0.006122	0	0
CDH10	1008	broad.mit.edu	37	5	24537654	24537654	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:24537654C>T	uc003jgr.1	-	3	693	c.361G>A	c.(361-363)GAA>AAA	p.E121K	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	121	Cadherin 1.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		AAGGCCTTTTCCTCCCTATCA	0.383000										HNSCC(23;0.051)			30	71					0	0	0.008361	0	0
PARP8	79668	broad.mit.edu	37	5	50091235	50091235	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:50091235C>T	uc003jon.3	+	13	1594	c.1412C>T	c.(1411-1413)TCA>TTA	p.S471L	PARP8_uc011cpz.1_Missense_Mutation_p.S363L|PARP8_uc003joo.2_Missense_Mutation_p.S471L|PARP8_uc003jop.2_Missense_Mutation_p.S471L	NM_024615	NP_078891	Q8N3A8	PARP8_HUMAN	poly (ADP-ribose) polymerase family, member 8	471	Poly-Ser.					intracellular	NAD+ ADP-ribosyltransferase activity			lung(3)|large_intestine(1)|ovary(1)	5		Lung NSC(810;0.0305)|Breast(144;0.222)				TCTTCATCTTCATCTTCTCAG	0.398000													15	43					0	0	0.003163	0	0
GPR98	84059	broad.mit.edu	37	5	89938699	89938699	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:89938699C>T	uc003kju.2	+	13	2490	c.2394C>T	c.(2392-2394)ATC>ATT	p.I798I	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	798	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGCTCCACATCATCCGATCAA	0.398000													38	131					0	0	0.006999	0	0
GPR98	84059	broad.mit.edu	37	5	89971227	89971227	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:89971227G>A	uc003kju.2	+	24	5374	c.5278G>A	c.(5278-5280)GTG>ATG	p.V1760M	GPR98_uc003kjt.2_Translation_Start_Site|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1760	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		ATTTAGAACAGTGTCCTTGAC	0.443000													6	20					0	0	0.003080	0	0
C5orf13	9315	broad.mit.edu	37	5	111066668	111066669	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:111066668_111066669CC>TT	uc003kpl.2	-	3	635_636	c.156_157GG>AA	c.(154-159)CTGGGC>CTAAGC	p.G53S	C5orf13_uc011cvr.1_Missense_Mutation_p.G97S|C5orf13_uc011cvs.1_Missense_Mutation_p.G87S|C5orf13_uc003kpk.2_Intron|C5orf13_uc003kpm.2_Missense_Mutation_p.G53S|C5orf13_uc011cvk.1_Missense_Mutation_p.G53S|C5orf13_uc011cvl.1_Missense_Mutation_p.G53S|C5orf13_uc011cvm.1_Missense_Mutation_p.G53S|C5orf13_uc011cvn.1_Missense_Mutation_p.G53S|C5orf13_uc011cvo.1_Missense_Mutation_p.G53S|C5orf13_uc011cvp.1_Missense_Mutation_p.G53S|C5orf13_uc011cvq.1_Missense_Mutation_p.G53S	NM_001142483	NP_001135955	Q16612	NP311_HUMAN	neuronal protein 3.1 isoform a	53						cytoplasm				skin(1)	1		all_cancers(142;0.00597)|all_epithelial(76;0.000144)|Prostate(80;0.0115)|Colorectal(10;0.0446)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;5.45e-09)|Epithelial(69;2e-08)|all cancers(49;1.9e-06)|COAD - Colon adenocarcinoma(37;0.0514)|Colorectal(14;0.0629)		TCACTGCTGCCCAGTGGAGTCA	0.485000													43	81					0	0	0.004672	0	0
SNCAIP	9627	broad.mit.edu	37	5	121786472	121786472	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:121786472G>A	uc003ksw.1	+	10	2136	c.1930G>A	c.(1930-1932)GAT>AAT	p.D644N	SNCAIP_uc011cwl.1_Missense_Mutation_p.D202N|SNCAIP_uc003ksx.1_Missense_Mutation_p.D691N|SNCAIP_uc003ksy.1_Missense_Mutation_p.D278N|SNCAIP_uc003ksz.1_Missense_Mutation_p.D278N|SNCAIP_uc010jcu.2_Missense_Mutation_p.D240N|SNCAIP_uc011cwm.1_Missense_Mutation_p.D278N|SNCAIP_uc003kta.1_Missense_Mutation_p.D276N|SNCAIP_uc010jcv.1_RNA|SNCAIP_uc010jcw.1_Missense_Mutation_p.D338N|SNCAIP_uc010jcx.1_Missense_Mutation_p.D584N|uc003ktb.1_Intron|SNCAIP_uc003ktc.1_Missense_Mutation_p.D160N	NM_005460	NP_005451	Q9Y6H5	SNCAP_HUMAN	synuclein alpha interacting protein	644					cell death|dopamine metabolic process|regulation of inclusion body assembly|regulation of neurotransmitter secretion	cytoplasm|neuronal cell body|nucleolus|presynaptic membrane	ubiquitin protein ligase binding			ovary(1)|pancreas(1)	2		all_cancers(142;0.00787)|Prostate(80;0.0327)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	OV - Ovarian serous cystadenocarcinoma(64;0.000625)|Epithelial(69;0.00216)|all cancers(49;0.0232)		GGAATTCCAGGATGCTCAGGC	0.438000													14	35					0	0	0.003163	0	0
FNIP1	96459	broad.mit.edu	37	5	131054747	131054747	+	Silent	SNP	A	G	G			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:131054747A>G	uc003kvs.1	-	5	604	c.462T>C	c.(460-462)CCT>CCC	p.P154P	RAPGEF6_uc003kvp.1_Intron|FNIP1_uc003kvt.1_Silent_p.P154P|FNIP1_uc010jdm.1_Silent_p.P109P|FNIP1_uc003kvu.2_Silent_p.P154P	NM_133372	NP_588613	Q8TF40	FNIP1_HUMAN	folliculin interacting protein 1 isoform 1	154					regulation of protein phosphorylation	cytoplasm	protein binding			pancreas(1)|skin(1)	2		all_cancers(142;0.00347)|Lung NSC(810;0.106)|all_lung(232;0.123)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Lung(113;0.0665)		TGAGCTGTGGAGGGGAACTAT	0.383000													28	76					0	0	0.008361	0	0
KIF3A	11127	broad.mit.edu	37	5	132038599	132038599	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:132038599C>T	uc003kxo.2	-	11	1698	c.1544G>A	c.(1543-1545)CGC>CAC	p.R515H	KIF3A_uc003kxm.2_Missense_Mutation_p.R97H|KIF3A_uc003kxn.2_Missense_Mutation_p.R500H|KIF3A_uc011cxf.1_Missense_Mutation_p.R542H|KIF3A_uc003kxp.2_Missense_Mutation_p.R518H	NM_007054	NP_008985	Q9Y496	KIF3A_HUMAN	kinesin family member 3A	515	Potential.				blood coagulation|organelle organization|plus-end-directed vesicle transport along microtubule	centrosome|cytosol|kinesin II complex|spindle microtubule	ATP binding|plus-end-directed microtubule motor activity|protein binding			pancreas(1)	1		all_cancers(142;0.0751)|Breast(839;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			AAGTTCTCTGCGAAGTTGCTC	0.388000													52	151					0	0	0.003610	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431950	140431951	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:140431950_140431951GG>AA	uc003lik.1	+	1	972_973	c.895_896GG>AA	c.(895-897)GGA>AAA	p.G299K		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	299	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCCTCAAAATGGAGAAGTTCGA	0.465000													21	54					0	0	0.004672	0	0
PCDHB4	56131	broad.mit.edu	37	5	140502954	140502954	+	Silent	SNP	C	T	T	rs148427211		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:140502954C>T	uc003lip.1	+	1	1374	c.1374C>T	c.(1372-1374)TTC>TTT	p.F458F		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	458	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			ACACCCTGTTCGTCCGCGAGA	0.627000													35	94					0	0	0.003610	0	0
PCDHB18	54660	broad.mit.edu	37	5	140616248	140616248	+	Missense_Mutation	SNP	T	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:140616248T>C	uc003ljc.1	+	1	2311	c.1963T>C	c.(1963-1965)TTC>CTC	p.F655L		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GGTGTTCCTGTTCGTGGCGGT	0.682000													44	93					0	0	0.003610	0	0
PCDHGA2	56113	broad.mit.edu	37	5	140720785	140720785	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:140720785C>T	uc003ljk.1	+	1	2432	c.2247C>T	c.(2245-2247)TTC>TTT	p.F749F	PCDHGA1_uc003lji.1_Intron|PCDHGA3_uc003ljm.1_5'Flank|PCDHGA3_uc010jfx.1_5'Flank|PCDHGA2_uc011dao.1_Silent_p.F749F|PCDHGA3_uc011dap.1_5'Flank	NM_018915	NP_061738	Q9Y5H1	PCDG2_HUMAN	protocadherin gamma subfamily A, 2 isoform 1	749	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCGGGCTTTCCTGCAGACCT	0.627000													22	67					0	0	0.003954	0	0
PCDHGA7	56108	broad.mit.edu	37	5	140762923	140762923	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:140762923C>T	uc003lka.1	+	1	457	c.457C>T	c.(457-459)CCG>TCG	p.P153S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003ljz.1_Missense_Mutation_p.P153S	NM_018920	NP_061743	Q9Y5G6	PCDG7_HUMAN	protocadherin gamma subfamily A, 7 isoform 1	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGTTCGGTTTCCGTTAAGCGA	0.473000													20	35					0	0	0.007413	0	0
TCERG1	10915	broad.mit.edu	37	5	145883447	145883447	+	Nonsense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:145883447C>T	uc003lob.2	+	18	2648	c.2608C>T	c.(2608-2610)CGA>TGA	p.R870*	TCERG1_uc003loc.2_Nonsense_Mutation_p.R849*	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	870	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGCAAGCCTTCGAGAACGAGA	0.418000													19	61					0	0	0.001523	0	0
GRIA1	2890	broad.mit.edu	37	5	153144012	153144012	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:153144012C>T	uc003lva.3	+	12	2207	c.1842C>T	c.(1840-1842)ATC>ATT	p.I614I	GRIA1_uc003luy.3_Silent_p.I614I|GRIA1_uc003luz.3_Silent_p.I519I|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.I534I|GRIA1_uc011dcx.1_Silent_p.I545I|GRIA1_uc011dcy.1_Silent_p.I624I|GRIA1_uc011dcz.1_Silent_p.I624I	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	614	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	CTGGTCGCATCGTTGGTGGCG	0.572000													22	66					0	0	0.003954	0	0
TIMD4	91937	broad.mit.edu	37	5	156349165	156349165	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr5:156349165G>A	uc003lwh.2	-	7	1014	c.957C>T	c.(955-957)ATC>ATT	p.I319I	TIMD4_uc010jii.2_Silent_p.I291I|TIMD4_uc003lwg.2_Silent_p.I21I	NM_138379	NP_612388	Q96H15	TIMD4_HUMAN	T-cell immunoglobulin and mucin domain	319	Helical; (Potential).					integral to membrane				ovary(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGGAGGGGGCGATGATCATCA	0.527000													102	260					0	0	0.003610	0	0
CAGE1	285782	broad.mit.edu	37	6	7379053	7379053	+	Nonsense_Mutation	SNP	T	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:7379053T>A	uc003mxl.1	-	4	1015	c.484A>T	c.(484-486)AAG>TAG	p.K162*	CAGE1_uc003mxi.2_Nonsense_Mutation_p.K26*|CAGE1_uc003mxj.2_5'UTR			Q8TC20	CAGE1_HUMAN	Homo sapiens CAGE-1 mRNA, complete cds.	162											0	Ovarian(93;0.0418)					TTTTCTTCCTTAAATGAGTCT	0.378000													15	27					0	0	0.002450	0	0
SNRNP48	154007	broad.mit.edu	37	6	7601663	7601663	+	Silent	SNP	C	T	T	rs148291598	byFrequency	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:7601663C>T	uc003mxr.2	+	5	560	c.501C>T	c.(499-501)TTC>TTT	p.F167F	SNRNP48_uc003mxs.2_RNA	NM_152551	NP_689764	Q6IEG0	SNR48_HUMAN	U11/U12 snRNP 48K	167					mRNA processing	cytoplasm|U12-type spliceosomal complex	metal ion binding				0						TCTATGATTTCGTAGTTGAGG	0.378000													34	64					0	0	0.003271	0	0
RANBP9	10048	broad.mit.edu	37	6	13642741	13642741	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:13642741C>T	uc003nbb.2	-	7	1254	c.1195G>A	c.(1195-1197)GAA>AAA	p.E399K	RANBP9_uc003nba.2_Missense_Mutation_p.E58K	NM_005493	NP_005484	Q96S59	RANB9_HUMAN	RAN binding protein 9	399					axon guidance|microtubule nucleation|protein complex assembly	cytosol|microtubule associated complex|nucleus	Ran GTPase binding			lung(1)|skin(1)	2	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.223)			GCTAATTCTTCTAGAACGGTC	0.358000													17	28					0	0	0.004990	0	0
BAT3	7917	broad.mit.edu	37	6	31611729	31611729	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:31611729G>T	uc003nvg.3	-	13	1918	c.1604C>A	c.(1603-1605)GCC>GAC	p.A535D	BAT3_uc003nvf.3_Missense_Mutation_p.A529D|BAT3_uc003nvh.3_Missense_Mutation_p.A529D|BAT3_uc003nvi.3_Missense_Mutation_p.A529D|BAT3_uc011dnw.1_Missense_Mutation_p.A529D|BAT3_uc011dnx.1_Missense_Mutation_p.A528D	NM_004639	NP_004630	P46379	BAG6_HUMAN	HLA-B associated transcript-3 isoform a	535	Pro-rich.|4 X 29 AA approximate repeats.				apoptosis in response to endoplasmic reticulum stress|brain development|cell differentiation|chromatin modification|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|embryo development|internal peptidyl-lysine acetylation|kidney development|lung development|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|protein stabilization|spermatogenesis|synaptonemal complex assembly|tail-anchored membrane protein insertion into ER membrane|transport|ubiquitin-dependent protein catabolic process	BAT3 complex|nucleus	polyubiquitin binding|proteasome binding|ribosome binding				0						GGCCAACGAGGCATTGGTACC	0.552000													43	235					1.86633e-21	2.07902e-21	0.003610	1	0
VARS	7407	broad.mit.edu	37	6	31760655	31760655	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:31760655G>A	uc003nxe.2	-	4	963	c.540C>T	c.(538-540)GCC>GCT	p.A180A	VARS_uc011doi.1_RNA	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	180	GST C-terminal.				translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	AGATCCGGCGGGCAGGTGGGT	0.542000													42	164					0	0	0.003214	0	0
NOTCH4	4855	broad.mit.edu	37	6	32187406	32187406	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:32187406C>T	uc003obb.2	-	8	1612	c.1473G>A	c.(1471-1473)CTG>CTA	p.L491L	NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA|NOTCH4_uc003obc.2_Silent_p.L491L	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	491	EGF-like 12; calcium-binding (Potential).|Extracellular (Potential).				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						CAAGTAGGTCCAGACAGGTGC	0.592000													96	335					0	0	0.003610	0	0
COL12A1	1303	broad.mit.edu	37	6	75833060	75833060	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:75833060G>A	uc003phs.2	-	43	7098	c.6932C>T	c.(6931-6933)CCA>CTA	p.P2311L	COL12A1_uc003pht.2_Missense_Mutation_p.P1147L	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	2311					cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						CCGGGCTGGTGGAATGGTGGG	0.428000													4	8					0	0	0.000248	0	0
UBE2CBP	90025	broad.mit.edu	37	6	83667048	83667048	+	Missense_Mutation	SNP	G	A	A	rs143403921	byFrequency	TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:83667048G>A	uc003pjp.2	-	9	1240	c.1132C>T	c.(1132-1134)CGT>TGT	p.R378C	UBE2CBP_uc011dyx.1_RNA	NM_198920	NP_944602	Q7Z6J8	UB2CB_HUMAN	ubiquitin-conjugating enzyme E2C binding	378	HECT-like.					cytoplasm	ligase activity			ovary(1)	1		all_cancers(76;0.000374)|Acute lymphoblastic leukemia(125;3.85e-06)|all_hematologic(105;0.0017)|all_epithelial(107;0.0548)		BRCA - Breast invasive adenocarcinoma(397;0.0944)		GAATTCACACGGCGAAGGGAT	0.463000													3	10					0	0	0.000602	0	0
PRSS35	167681	broad.mit.edu	37	6	84234103	84234103	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:84234103G>A	uc003pjz.2	+	2	1106	c.943G>A	c.(943-945)GAT>AAT	p.D315N	PRSS35_uc010kbm.2_Missense_Mutation_p.D315N	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	315	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		ATTTGATAACGATAGGGCTGA	0.473000													18	42					0	0	0.006122	0	0
FUT9	10690	broad.mit.edu	37	6	96651676	96651676	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:96651676C>T	uc003pop.3	+	3	986	c.645C>T	c.(643-645)ATC>ATT	p.I215I		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	215	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		GCATTGAAATCCATACCTACG	0.373000													14	19					0	0	0.002450	0	0
MED23	9439	broad.mit.edu	37	6	131948547	131948547	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:131948547C>T	uc003qcs.1	-	3	322	c.148G>A	c.(148-150)GGT>AGT	p.G50S	ENPP3_uc010kfn.1_5'Flank|ENPP3_uc003qcu.3_5'Flank|MED23_uc003qcq.2_Missense_Mutation_p.G50S|MED23_uc003qct.1_Missense_Mutation_p.G50S|MED23_uc011ecb.1_RNA	NM_004830	NP_004821	Q9ULK4	MED23_HUMAN	mediator complex subunit 23 isoform a	50					regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	transcription factor complex	protein binding|transcription coactivator activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.0753)			GBM - Glioblastoma multiforme(226;0.0115)|OV - Ovarian serous cystadenocarcinoma(155;0.0608)		TGAGAAAGACCACCCCAAAAC	0.308000													32	56					0	0	0.004878	0	0
IYD	389434	broad.mit.edu	37	6	150719294	150719294	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:150719294C>T	uc003qnu.1	+	5	931	c.791C>T	c.(790-792)CCC>CTC	p.P264L	IYD_uc003qnv.1_3'UTR|IYD_uc003qnw.1_RNA|IYD_uc003qnx.1_3'UTR|IYD_uc010kik.1_Missense_Mutation_p.P182L	NM_203395	NP_981932	Q6PHW0	IYD1_HUMAN	iodotyrosine dehalogenase 1 isoform 2	264	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process	integral to membrane|plasma membrane				ovary(2)	2		Ovarian(120;0.028)	BRCA - Breast invasive adenocarcinoma(37;0.215)	OV - Ovarian serous cystadenocarcinoma(155;4.16e-12)		ATGCTGCTCCCCGTGGGGTAC	0.632000													24	30					0	0	0.003330	0	0
THBS2	7058	broad.mit.edu	37	6	169628377	169628377	+	Splice_Site	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:169628377C>T	uc003qwt.2	-	16	2508	c.2260_splice	c.e16-1	p.D754_splice		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor						cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		GGCAGTTGTCCTGGAAAACCA	0.488000													8	22					0	0	0.004482	0	0
AMZ1	155185	broad.mit.edu	37	7	2752501	2752501	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:2752501G>A	uc003smr.1	+	7	1847	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Missense_Mutation_p.E245K	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	496							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		CTGGGATGGGGAAGAGAGTTA	0.617000													33	39					0	0	0.002445	0	0
NUPL2	11097	broad.mit.edu	37	7	23236306	23236306	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:23236306C>T	uc003svu.2	+	5	789	c.530C>T	c.(529-531)TCT>TTT	p.S177F	NUPL2_uc003svv.2_RNA|NUPL2_uc003svw.2_Missense_Mutation_p.S54F|NUPL2_uc011jyw.1_RNA|NUPL2_uc003svx.2_Missense_Mutation_p.S54F|NUPL2_uc011jyx.1_5'UTR	NM_007342	NP_031368	O15504	NUPL2_HUMAN	nucleoporin like 2	177					carbohydrate metabolic process|glucose transport|mRNA transport|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nuclear pore	nuclear export signal receptor activity|nucleic acid binding|zinc ion binding			skin(2)|ovary(1)	3						CAGCTAAATTCTGTCCAACGT	0.308000													12	49					0	0	0.004007	0	0
MPP6	51678	broad.mit.edu	37	7	24703288	24703288	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:24703288C>T	uc003swx.2	+	7	1030	c.731C>T	c.(730-732)TCC>TTC	p.S244F	MPP6_uc003swy.2_Missense_Mutation_p.S244F|MPP6_uc010kur.2_5'Flank	NM_016447	NP_057531	Q9NZW5	MPP6_HUMAN	membrane protein, palmitoylated 6	244	SH3.				protein complex assembly		protein binding				0						TTGAAGTTTTCCAAAGGAGAG	0.338000													17	57					0	0	0.004007	0	0
CRHR2	1395	broad.mit.edu	37	7	30695560	30695560	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:30695560G>A	uc003tbn.2	-	9	1144	c.900C>T	c.(898-900)TCC>TCT	p.S300S	CRHR2_uc010kvw.1_Silent_p.S300S|CRHR2_uc010kvx.1_Silent_p.S299S|CRHR2_uc010kvy.1_Silent_p.S136S|CRHR2_uc003tbo.2_Silent_p.S286S|CRHR2_uc003tbp.2_Silent_p.S327S	NM_001883	NP_001874	Q13324	CRFR2_HUMAN	corticotropin releasing hormone receptor 2	300	Cytoplasmic (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(2)|ovary(1)|skin(1)	4						GGATTGTCTCGGATGTGGTGG	0.562000													79	91					0	0	0.003610	0	0
SFRP4	6424	broad.mit.edu	37	7	37954014	37954014	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:37954014C>T	uc003tfo.3	-	2	873	c.487G>A	c.(487-489)GAA>AAA	p.E163K		NM_003014	NP_003005	Q6FHJ7	SFRP4_HUMAN	secreted frizzled-related  protein 4 precursor	163					brain development|cell differentiation|decidualization|embryo development|epithelium development|gonad development|mammary gland involution|menstrual cycle phase|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell proliferation|negative regulation of JNK cascade|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of sodium-dependent phosphate transport|phosphate ion homeostasis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epidermal cell differentiation|positive regulation of gene expression|positive regulation of receptor internalization|vasculature development|Wnt receptor signaling pathway	cell surface|cytoplasm|extracellular space|nucleus	PDZ domain binding|Wnt receptor activity|Wnt-protein binding			lung(1)	1						AGAGGCCTTTCCTGTACCATC	0.483000													41	46					0	0	0.003610	0	0
GCK	2645	broad.mit.edu	37	7	44190560	44190560	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:44190560C>T	uc003tkl.2	-	4	948	c.478G>A	c.(478-480)GAT>AAT	p.D160N	GCK_uc003tkj.1_Missense_Mutation_p.D159N|GCK_uc003tkk.1_Missense_Mutation_p.D161N	NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	160					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						CCCACCTTATCGATGTCTTCG	0.567000													155	228					0	0	0.003610	0	0
INTS4L1	285905	broad.mit.edu	37	7	64639749	64639749	+	RNA	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:64639749C>T	uc003ttw.2	+	5		c.632C>T				NR_027393				Homo sapiens cDNA FLJ25037 fis, clone CBL03066.												0						GCCTTGATTTCCTAGTTGACA	0.443000													4	18					0	0	0.001168	0	0
CLIP2	7461	broad.mit.edu	37	7	73814775	73814775	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:73814775C>T	uc003uam.2	+	15	3283	c.2956C>T	c.(2956-2958)CTG>TTG	p.L986L	CLIP2_uc003uan.2_Silent_p.L951L	NM_003388	NP_003379	Q9UDT6	CLIP2_HUMAN	CAP-GLY domain containing linker protein 2	986	Potential.					microtubule associated complex				skin(3)	3						GCTTCTGCGGCTGCAGCACCA	0.632000													12	29					0	0	0.001368	0	0
GNAI1	2770	broad.mit.edu	37	7	79764527	79764527	+	Missense_Mutation	SNP	G	C	C			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:79764527G>C	uc003uhb.1	+	1	388	c.51G>C	c.(49-51)AAG>AAC	p.K17N	GNAI1_uc011kgt.1_5'Flank	NM_002069	NP_002060	P63096	GNAI1_HUMAN	guanine nucleotide binding protein (G protein),	17					cell cycle|cell division|inhibition of adenylate cyclase activity by G-protein signaling pathway|platelet activation|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody|nucleus	G-protein beta/gamma-subunit complex binding|GTP binding|metabotropic serotonin receptor binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AGCGGAGTAAGATGATCGACC	0.597000													4	38					0	0	0.000248	0	0
HGF	3082	broad.mit.edu	37	7	81388078	81388078	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:81388078G>A	uc003uhl.2	-	3	462	c.297C>T	c.(295-297)TTC>TTT	p.F99F	HGF_uc003uhm.2_Silent_p.F99F|HGF_uc003uhn.1_Silent_p.F99F|HGF_uc003uho.1_Silent_p.F99F|HGF_uc003uhp.2_Silent_p.F99F	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	99	PAN.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						TATTGAAGGGGAACCAGAGGC	0.318000													58	79					0	0	0.003610	0	0
ZNF804B	219578	broad.mit.edu	37	7	88963644	88963644	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:88963644G>A	uc011khi.1	+	4	1886	c.1348G>A	c.(1348-1350)GAT>AAT	p.D450N		NM_181646	NP_857597	A4D1E1	Z804B_HUMAN	zinc finger protein 804B	450						intracellular	zinc ion binding			ovary(5)|skin(3)|pancreas(2)|upper_aerodigestive_tract(1)	11	all_hematologic(106;0.125)|Lung NSC(181;0.15)|all_lung(186;0.151)		STAD - Stomach adenocarcinoma(171;0.0513)			TCAAAGCAAGGATGGCCACAC	0.398000										HNSCC(36;0.09)			24	89					0	0	0.004656	0	0
MOSPD3	64598	broad.mit.edu	37	7	100211216	100211217	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:100211216_100211217CC>TT	uc003uvq.2	+	4	600_601	c.398_399CC>TT	c.(397-399)TCC>TTT	p.S133F	MOSPD3_uc003uvr.2_Missense_Mutation_p.S133F|MOSPD3_uc003uvs.2_Missense_Mutation_p.S133F|MOSPD3_uc003uvt.2_Missense_Mutation_p.S123F	NM_001040097	NP_001035186	O75425	MSPD3_HUMAN	motile sperm domain containing 3 isoform a	133	MSP.					integral to membrane	structural molecule activity			ovary(2)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					GACATTACCTCCATTCTGAGAG	0.634000													14	83					0	0	0.004672	0	0
MET	4233	broad.mit.edu	37	7	116411677	116411677	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:116411677C>T	uc003vij.2	+	13	3043	c.2856C>T	c.(2854-2856)TTC>TTT	p.F952F	MET_uc010lkh.2_Silent_p.F970F|MET_uc011knj.1_Silent_p.F522F	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	952	Helical; (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			TTGGGTTTTTCCTGTGGCTGA	0.343000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)				24	110					0	0	0.007291	0	0
FLNC	2318	broad.mit.edu	37	7	128489437	128489437	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:128489437G>A	uc003vnz.3	+	30	5213	c.5004G>A	c.(5002-5004)GTG>GTA	p.V1668V	FLNC_uc003voa.3_Silent_p.V1668V	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1668	Filamin 15.			V -> M (in Ref. 3; CAB46442).	cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGATCACGGTGGATGCCAAGG	0.637000													15	48					0	0	0.002450	0	0
WDR91	29062	broad.mit.edu	37	7	134891950	134891950	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:134891950G>A	uc003vsp.2	-	4	578	c.516C>T	c.(514-516)GTC>GTT	p.V172V	WDR91_uc010lmq.2_5'UTR|WDR91_uc010lmr.2_RNA	NM_014149	NP_054868	A4D1P6	WDR91_HUMAN	WD repeat domain 91	172										breast(2)|ovary(1)|skin(1)	4						GGATCACAGGGACTGGTGCAC	0.463000													22	76					0	0	0.002299	0	0
CHRM2	1129	broad.mit.edu	37	7	136700134	136700134	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:136700134G>A	uc003vtf.1	+	4	1145	c.522G>A	c.(520-522)GGG>GGA	p.G174G	CHRM2_uc003vtg.1_Silent_p.G174G|CHRM2_uc003vtj.1_Silent_p.G174G|CHRM2_uc003vtk.1_Silent_p.G174G|CHRM2_uc003vtl.1_Silent_p.G174G|CHRM2_uc003vtm.1_Silent_p.G174G|CHRM2_uc003vti.1_Silent_p.G174G|CHRM2_uc003vto.1_Silent_p.G174G|CHRM2_uc003vtn.1_Silent_p.G174G|uc003vtp.1_Intron	NM_001006630	NP_001006631	P08172	ACM2_HUMAN	cholinergic receptor, muscarinic 2	174	Extracellular (By similarity).				activation of phospholipase C activity by muscarinic acetylcholine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|nervous system development|regulation of heart contraction|response to virus	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|protein binding			ovary(4)|central_nervous_system(1)	5					Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Carbachol(DB00411)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Desipramine(DB01151)|Diphenidol(DB01231)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Flavoxate(DB01148)|Gallamine Triethiodide(DB00483)|Homatropine Methylbromide(DB00725)|Hyoscyamine(DB00424)|Ipratropium(DB00332)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Metocurine(DB01336)|Mivacurium(DB01226)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Pilocarpine(DB01085)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Rocuronium(DB00728)|Thiethylperazine(DB00372)|Tolterodine(DB01036)|Tridihexethyl(DB00505)|Triflupromazine(DB00508)	TGGAGGATGGGGAGTGCTACA	0.488000													92	101					0	0	0.003610	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				32	52					0	0	0.003271	0	0
USP17L2	377630	broad.mit.edu	37	8	11996046	11996046	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:11996046G>A	uc003wvc.1	-	1	224	c.224C>T	c.(223-225)CCT>CTT	p.P75L	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	75					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						CACCGCAGCAGGTCTCCTGCT	0.572000													18	255					0	0	0.002299	0	0
CSGALNACT1	55790	broad.mit.edu	37	8	19363171	19363171	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:19363171C>T	uc011kyn.1	-	4	1239	c.175G>A	c.(175-177)GCC>ACC	p.A59T	CSGALNACT1_uc011kyo.1_Missense_Mutation_p.A59T|CSGALNACT1_uc003wzg.2_RNA|CSGALNACT1_uc011kyp.1_Missense_Mutation_p.A58T|CSGALNACT1_uc003wzh.2_RNA	NM_001130518	NP_001123990	Q8TDX6	CGAT1_HUMAN	chondroitin sulfate	59	Lumenal (Potential).|Potential.				anatomical structure morphogenesis|cell proliferation|cell recognition|chondroitin sulfate biosynthetic process|chondroitin sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|dermatan sulfate proteoglycan biosynthetic process|extracellular matrix organization|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|heparin biosynthetic process|nervous system development|UDP-glucuronate metabolic process|UDP-N-acetylgalactosamine metabolic process	Golgi cisterna membrane|integral to Golgi membrane|soluble fraction	glucuronosyl-N-acetylgalactosaminyl-proteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|glucuronosyltransferase activity|glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity|metal ion binding|peptidoglycan glycosyltransferase activity			central_nervous_system(2)|ovary(1)	3				Colorectal(111;0.182)		TGAAGGACGGCCTGGTACCCC	0.622000													6	39					0	0	0.003080	0	0
LOXL2	4017	broad.mit.edu	37	8	23167234	23167234	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:23167234G>A	uc003xdh.1	-	10	2166	c.1827C>T	c.(1825-1827)TCC>TCT	p.S609S	LOXL2_uc010lty.1_Silent_p.S148S	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	609	Lysyl-oxidase like.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		GCCGGAAGTCGGACTGGCCAT	0.677000													16	22					0	0	0.004990	0	0
ADAM28	10863	broad.mit.edu	37	8	24197052	24197052	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:24197052G>A	uc003xdy.2	+	15	1724	c.1641G>A	c.(1639-1641)GTG>GTA	p.V547V	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.V234V	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	547	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		GTCGCAGAGTGGATGACACAC	0.488000													5	14					0	0	0.000602	0	0
TACC1	6867	broad.mit.edu	37	8	38699874	38699875	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:38699874_38699875CC>TT	uc010lwp.2	+	10	2409_2410	c.2030_2031CC>TT	c.(2029-2031)GCC>GTT	p.A677V	TACC1_uc003xma.2_Missense_Mutation_p.A115V|TACC1_uc003xlz.2_Missense_Mutation_p.A482V|TACC1_uc003xmc.3_Missense_Mutation_p.A481V|TACC1_uc011lbz.1_Missense_Mutation_p.A664V|TACC1_uc003xmb.3_Missense_Mutation_p.A603V|TACC1_uc003xmf.3_Missense_Mutation_p.A267V|TACC1_uc011lca.1_Missense_Mutation_p.A660V|TACC1_uc011lcb.1_Missense_Mutation_p.A453V|TACC1_uc011lcd.1_RNA|TACC1_uc003xmh.3_Missense_Mutation_p.A494V|TACC1_uc010lwq.2_Missense_Mutation_p.A493V	NM_006283	NP_006274	O75410	TACC1_HUMAN	transforming, acidic coiled-coil containing	677					cell cycle|cell division	intermediate filament cytoskeleton|microtubule organizing center|nucleus	protein binding			ovary(1)	1		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.065)	LUSC - Lung squamous cell carcinoma(45;1.7e-09)|COAD - Colon adenocarcinoma(9;0.235)			AAGGAACAGGCCCTGGCTGACC	0.455000													25	142					0	0	0.004672	0	0
ANK1	286	broad.mit.edu	37	8	41552191	41552191	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:41552191G>A	uc003xok.2	-	28	3330	c.3246C>T	c.(3244-3246)TCC>TCT	p.S1082S	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.S398S|ANK1_uc003xoi.2_Silent_p.S1082S|ANK1_uc003xoj.2_Silent_p.S1082S|ANK1_uc003xol.2_Silent_p.S1082S|ANK1_uc003xom.2_Silent_p.S1123S	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1082					axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			TGCTCTTCAGGGAGCCCCCTT	0.612000													22	49					0	0	0.002780	0	0
KIAA0146	23514	broad.mit.edu	37	8	48353042	48353042	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:48353042C>T	uc003xqd.2	+	8	1044	c.1035C>T	c.(1033-1035)ACC>ACT	p.T345T	KIAA0146_uc011lcz.1_RNA|KIAA0146_uc011lda.1_Silent_p.T34T|KIAA0146_uc011ldb.1_Silent_p.T345T|KIAA0146_uc010lxs.2_5'UTR|KIAA0146_uc011ldc.1_Silent_p.T275T|KIAA0146_uc011ldd.1_Silent_p.T285T|KIAA0146_uc003xqe.2_5'UTR|KIAA0146_uc003xqf.2_RNA|KIAA0146_uc011lde.1_Silent_p.T34T|KIAA0146_uc010lxt.2_Silent_p.T34T	NM_001080394	NP_001073863	Q14159	K0146_HUMAN	hypothetical protein LOC23514	345											0		Lung NSC(58;0.175)				TTCTCTTCACCAAGGAGACTG	0.582000													31	110					0	0	0.004289	0	0
RP1	6101	broad.mit.edu	37	8	55538757	55538757	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:55538757G>A	uc003xsd.1	+	4	2463	c.2315G>A	c.(2314-2316)GGA>GAA	p.G772E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	772					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AAGGTTCAAGGACTTTTAACC	0.294000													19	43					0	0	0.007413	0	0
NKAIN3	286183	broad.mit.edu	37	8	63659614	63659614	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:63659614G>A	uc010lyq.1	+	4	529	c.397G>A	c.(397-399)GTC>ATC	p.V133I		NM_173688	NP_775959	Q8N8D7	NKAI3_HUMAN	Na+/K+ transporting ATPase interacting 3	133						integral to membrane|plasma membrane					0	Breast(64;0.127)	Lung NSC(129;0.187)				TTACACGTACGTCTCTGTCAC	0.498000													15	64					0	0	0.004007	0	0
NIPAL2	79815	broad.mit.edu	37	8	99208211	99208211	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:99208211G>A	uc003yil.1	-	9	1159	c.903C>T	c.(901-903)TTC>TTT	p.F301F	NIPAL2_uc011lgw.1_Silent_p.F97F|NIPAL2_uc003yim.1_Silent_p.F301F	NM_024759	NP_079035	Q9H841	NPAL2_HUMAN	NIPA-like domain containing 2	301						integral to membrane					0						GAGCACCAAGGAATTCCTGAT	0.284000													8	48					0	0	0.004482	0	0
CSMD3	114788	broad.mit.edu	37	8	113275983	113275983	+	Silent	SNP	G	A	A	rs61754530		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:113275983G>A	uc003ynu.2	-	61	9906	c.9747C>T	c.(9745-9747)TTC>TTT	p.F3249F	CSMD3_uc003yns.2_Silent_p.F2451F|CSMD3_uc003ynt.2_Silent_p.F3209F|CSMD3_uc011lhx.1_Silent_p.F3080F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3249	Sushi 25.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						AGCCCCAGTCGAAATTTGTTC	0.453000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			27	46					0	0	0.007291	0	0
FER1L6	654463	broad.mit.edu	37	8	125058037	125058037	+	Nonsense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:125058037G>A	uc003yqw.2	+	21	2825	c.2619G>A	c.(2617-2619)TGG>TGA	p.W873*		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	873	Cytoplasmic (Potential).|C2 3.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CTCCGACCTGGAACCAGATGC	0.502000													65	234					0	0	0.003610	0	0
GSDMC	56169	broad.mit.edu	37	8	130789639	130789639	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:130789639G>A	uc003ysr.2	-	2	1077	c.195C>T	c.(193-195)ATC>ATT	p.I65I		NM_031415	NP_113603	Q9BYG8	GSDMC_HUMAN	melanoma-derived leucine zipper, extra-nuclear	65						mitochondrion				ovary(2)|skin(1)	3						TTGGCTCCAGGATGTCATTGA	0.433000													12	46					0	0	0.000978	0	0
CPSF1	29894	broad.mit.edu	37	8	145625048	145625048	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr8:145625048G>A	uc003zcj.2	-	12	1247	c.1172C>T	c.(1171-1173)TCC>TTC	p.S391F		NM_013291	NP_037423	Q10570	CPSF1_HUMAN	cleavage and polyadenylation specific factor 1,	391					mRNA cleavage|mRNA export from nucleus|mRNA polyadenylation|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage and polyadenylation specificity factor complex	mRNA 3'-UTR binding|protein binding			skin(1)	1	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.88e-41)|Epithelial(56;1.67e-40)|all cancers(56;1.2e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0323)|Colorectal(110;0.055)			GAGGAGGAGGGAATTGCCCAG	0.652000													8	17					0	0	0.006214	0	0
CREB3	10488	broad.mit.edu	37	9	35733137	35733137	+	Silent	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr9:35733137C>T	uc003zxv.2	+	2	727	c.274C>T	c.(274-276)CTA>TTA	p.L92L	TLN1_uc003zxt.2_5'Flank|TLN1_uc003zxu.3_5'Flank|CREB3_uc010mla.2_5'UTR	NM_006368	NP_006359	O43889	CREB3_HUMAN	cAMP responsive element binding protein 3	92	Cytoplasmic (Potential).|Transcription activation (acidic).				chemotaxis|induction of positive chemotaxis|interspecies interaction between organisms|negative regulation of cell cycle|positive regulation of calcium ion transport|positive regulation of cell migration|positive regulation of transcription, DNA-dependent|reactivation of latent virus|regulation of cell proliferation	cytosol|endoplasmic reticulum|endoplasmic reticulum membrane|Golgi apparatus|integral to membrane|integral to membrane|nucleus|nucleus	cAMP response element binding protein binding|CCR1 chemokine receptor binding|DNA binding|protein dimerization activity|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|sequence-specific DNA binding transcription factor activity				0	all_epithelial(49;0.167)		Lung(28;0.00276)|LUSC - Lung squamous cell carcinoma(32;0.00418)|STAD - Stomach adenocarcinoma(86;0.194)	GBM - Glioblastoma multiforme(74;0.0285)		CTCTATGGATCTAGGTGAGTC	0.532000													19	17					0	0	0.006122	0	0
TLE4	7091	broad.mit.edu	37	9	82319812	82319812	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr9:82319812C>T	uc004ald.2	+	9	1552	c.703C>T	c.(703-705)CGT>TGT	p.R235C	TLE4_uc004alc.2_Missense_Mutation_p.R242C|TLE4_uc010mpr.2_Missense_Mutation_p.R121C|TLE4_uc004ale.2_5'UTR|TLE4_uc011lsq.1_Missense_Mutation_p.R210C|TLE4_uc010mps.2_Missense_Mutation_p.R235C|TLE4_uc004alf.2_Missense_Mutation_p.R181C	NM_007005	NP_008936	O60756	BCE1_HUMAN	transducin-like enhancer protein 4	Error:Variant_position_missing_in_O60756_after_alignment										lung(2)|ovary(1)|breast(1)|skin(1)	5						AATTGCAGCTCGTTATGTAAG	0.463000													36	43					0	0	0.004289	0	0
OR13C2	392376	broad.mit.edu	37	9	107367669	107367669	+	Silent	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr9:107367669G>A	uc011lvq.1	-	1	240	c.240C>T	c.(238-240)TCC>TCT	p.S80S		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	80	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCACTAGCGTGGAGGGAATAG	0.512000													7	23					0	0	0.006122	0	0
RAPGEF1	2889	broad.mit.edu	37	9	134471739	134471740	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr9:134471739_134471740GG>AA	uc004cbc.2	-	14	2206_2207	c.2076_2077CC>TT	c.(2074-2079)GTCCGC>GTTTGC	p.R693C	RAPGEF1_uc004cbb.2_Missense_Mutation_p.R711C|RAPGEF1_uc010mzm.2_RNA|RAPGEF1_uc010mzn.2_Missense_Mutation_p.R868C|RAPGEF1_uc004cbd.2_Missense_Mutation_p.R698C	NM_005312	NP_005303	Q13905	RPGF1_HUMAN	guanine nucleotide-releasing factor 2 isoform a	693	N-terminal Ras-GEF.				activation of MAPKK activity|nerve growth factor receptor signaling pathway|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|endosome	guanyl-nucleotide exchange factor activity|SH3 domain binding			lung(3)|ovary(2)|breast(1)|skin(1)	7		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;2.19e-05)|Epithelial(140;0.000364)		GATCCTCCGCGGACGTCCGGCC	0.545000													7	9					0	0	0.004672	0	0
GTF3C4	9329	broad.mit.edu	37	9	135559040	135559040	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr9:135559040C>T	uc010mzv.2	+	3	2533	c.2275C>T	c.(2275-2277)CGC>TGC	p.R759C	GTF3C4_uc010mzw.2_RNA	NM_012204	NP_036336	Q9UKN8	TF3C4_HUMAN	general transcription factor IIIC 4	759					transcription initiation from RNA polymerase III promoter	transcription factor TFIIIC complex	DNA binding|enzyme activator activity|histone acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2				OV - Ovarian serous cystadenocarcinoma(145;8.15e-07)|Epithelial(140;2.6e-05)		ATTCACAGATCGCAAACAGGC	0.408000													21	35					0	0	0.001882	0	0
MXRA5	25878	broad.mit.edu	37	X	3240718	3240718	+	Missense_Mutation	SNP	G	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chrX:3240718G>T	uc004crg.3	-	5	3165	c.3008C>A	c.(3007-3009)CCA>CAA	p.P1003Q		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1003						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GGTGGGGGTTGGAGTAAGGTG	0.463000													39	38					4.32679e-17	4.80618e-17	0.006999	1	0
CYBB	1536	broad.mit.edu	37	X	37641395	37641395	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chrX:37641395G>A	uc004ddr.2	+	2	161	c.100G>A	c.(100-102)GAT>AAT	p.D34N	CYBB_uc011mke.1_RNA|CYBB_uc011mkf.1_Intron|CYBB_uc011mkg.1_5'Flank	NM_000397	NP_000388	P04839	CY24B_HUMAN	cytochrome b-245 beta polypeptide	34	Extracellular (Potential).				electron transport chain|inflammatory response|innate immune response|respiratory burst|superoxide anion generation	NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|heme binding|protein heterodimerization activity|superoxide-generating NADPH oxidase activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						CCGGGTTTATGATATTCCACC	0.403000													16	25					0	0	0.007413	0	0
CAPN6	827	broad.mit.edu	37	X	110494267	110494267	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chrX:110494267G>A	uc004epc.1	-	8	1204	c.1036C>T	c.(1036-1038)CCT>TCT	p.P346S	CAPN6_uc011msu.1_Missense_Mutation_p.P91S	NM_014289	NP_055104	Q9Y6Q1	CAN6_HUMAN	calpain 6	346	Domain III.				microtubule bundle formation|proteolysis|regulation of cytoskeleton organization	perinuclear region of cytoplasm|spindle microtubule	calcium-dependent cysteine-type endopeptidase activity|microtubule binding			ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)|skin(1)	6						CCAAAAATAGGGTTGTTCACA	0.483000													133	121					0	0	0.003610	0	0
IL13RA2	3598	broad.mit.edu	37	X	114245315	114245315	+	Missense_Mutation	SNP	G	A	A			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chrX:114245315G>A	uc004epx.2	-	6	723	c.598C>T	c.(598-600)CCC>TCC	p.P200S	IL13RA2_uc010nqd.1_Missense_Mutation_p.P200S	NM_000640	NP_000631	Q14627	I13R2_HUMAN	interleukin 13 receptor, alpha 2 precursor	200	Extracellular (Potential).|Fibronectin type-III 2.					extracellular space|integral to membrane|soluble fraction	cytokine receptor activity			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3						TCCAAATAGGGAAATCTGCAT	0.368000													24	23					0	0	0.002299	0	0
SPANXN2	494119	broad.mit.edu	37	X	142795398	142795398	+	Missense_Mutation	SNP	C	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chrX:142795398C>T	uc004fbz.2	-	2	1034	c.280G>A	c.(280-282)GGA>AGA	p.G94R		NM_001009615	NP_001009615	Q5MJ10	SPXN2_HUMAN	SPANX-N2 protein	94										ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					TGTGAAGATCCTTCAGCTGAG	0.498000													144	114					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106774086	106774087	+	Splice_Site	INS	-	AGTAATACACGGCA	AGTAATACACGGCA			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr14:106774086_106774087insAGTAATACACGGCA	uc010tyt.1	-	430		c.15674_splice	c.e430+1							Parts of antibodies, mostly variable regions.												0						GCCTCTTGCACGTGTCCTCAGC	0.550													3	6	---	---	---	---					
XPC	7508	broad.mit.edu	37	3	14219966	14219968	+	In_Frame_Del	DEL	CCT	-	-	rs72561774		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr3:14219966_14219968delCCT	uc011ave.1	-	1	205_207	c.101_103delAGG	c.(100-105)GAGGAT>GAT	p.E34del	XPC_uc011avf.1_5'UTR|XPC_uc011avg.1_In_Frame_Del_p.E34del|LSM3_uc003byn.2_5'Flank	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C	34	Poly-Glu.|Glu-rich (acidic).				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						TCGCTCTCACCCTCCTCCTCCTC	0.734			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				9	73	---	---	---	---					
FAM149A	25854	broad.mit.edu	37	4	187074920	187074921	+	Frame_Shift_Del	DEL	AG	-	-			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr4:187074920_187074921delAG	uc003iyt.3	+	5	787_788	c.208_209delAG	c.(208-210)AGAfs	p.R70fs	FAM149A_uc011cla.1_Frame_Shift_Del_p.R70fs|FAM149A_uc010isj.2_Frame_Shift_Del_p.R70fs|FAM149A_uc010isk.2_RNA|FAM149A_uc003iyu.3_Frame_Shift_Del_p.R70fs|FAM149A_uc010isl.2_Frame_Shift_Del_p.R70fs|FAM149A_uc011clb.1_Frame_Shift_Del_p.R70fs	NM_015398	NP_056213	A5PLN7	F149A_HUMAN	hypothetical protein LOC25854	361										breast(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.19e-10)|BRCA - Breast invasive adenocarcinoma(30;1.22e-05)|GBM - Glioblastoma multiforme(59;0.000122)|STAD - Stomach adenocarcinoma(60;0.000288)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.166)		CAGCAACATCAGAGAGTATGTT	0.485													39	131	---	---	---	---					
PRIM2	5558	broad.mit.edu	37	6	57512916	57512917	+	Splice_Site	INS	-	T	T			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr6:57512916_57512917insT	uc003pdx.2	+	16	1839	c.1752_splice	c.e16+1			NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2						DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		ttttttttcaattttttttgta	0.000													3	4	---	---	---	---					
GUSB	2990	broad.mit.edu	37	7	65447032	65447048	+	Frame_Shift_Del	DEL	AGCTCCAGAGGCCGTCC	-	-			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:65447032_65447048delAGCTCCAGAGGCCGTCC	uc003tun.2	-	1	199_215	c.123_139delGGACGGCCTCTGGAGCT	c.(121-141)CTGGACGGCCTCTGGAGCTTCfs	p.L41fs	GUSB_uc011kdt.1_Frame_Shift_Del_p.L41fs|GUSB_uc010kzw.1_5'UTR	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	41_47					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						TCGGCGCGGAAGCTCCAGAGGCCGTCCAGCTCCTTGC	0.733													10	42	---	---	---	---					
PRKAR2B	5577	broad.mit.edu	37	7	106685616	106685618	+	In_Frame_Del	DEL	GGA	-	-			TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:106685616_106685618delGGA	uc003vdx.2	+	1	439_441	c.264_266delGGA	c.(262-267)GGGGAG>GGG	p.E92del		NM_002736	NP_002727	P31323	KAP3_HUMAN	cAMP-dependent protein kinase, regulatory	92	Dimerization and phosphorylation.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|intracellular signal transduction|nerve growth factor receptor signaling pathway|regulation of insulin secretion|transmembrane transport|water transport	centrosome|cytosol|plasma membrane	cAMP binding|cAMP-dependent protein kinase regulator activity			ovary(1)	1						CCGAGGACGGGGAGGAGGAGGAG	0.754													2	4	---	---	---	---					
SSPO	23145	broad.mit.edu	37	7	149518533	149518533	+	Frame_Shift_Del	DEL	C	-	-	rs11353848		TCGA-DA-A1I4-06A-11D-A196-08	TCGA-DA-A1I4-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	b8fa4fa2-b533-4d77-8522-ee29bbf2cb94	d574b360-78b4-4cfb-9c89-90acbff0a4b7	g.chr7:149518533delC	uc010lpk.2	+	89	12602	c.12602delC	c.(12601-12603)TCCfs	p.S4201fs	SSPO_uc010lpm.1_5'Flank|SSPO_uc003wgg.2_5'Flank|SSPO_uc003wgh.2_5'Flank|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4201	TSP type-1 19.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			GAGGAGCAGTCCCAGAGCCAG	0.711													3	4	---	---	---	---					
