Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
C1orf86	199990	broad.mit.edu	37	1	2125571	2125571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:2125571G>A	uc001aiy.2	-	2	90	c.64C>T	c.(64-66)CCT>TCT	p.P22S	C1orf86_uc001aiv.1_RNA|C1orf86_uc001aiw.1_RNA|C1orf86_uc001aix.1_Intron	NM_182533	NP_872339	Q6NZ36	CA086_HUMAN	hypothetical protein LOC199990 isoform 2	22											0	all_cancers(77;0.000134)|all_epithelial(69;4.45e-05)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;1.14e-19)|all_lung(118;1.22e-08)|Lung NSC(185;1.24e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Medulloblastoma(700;0.123)|Lung SC(97;0.128)		Epithelial(90;1.09e-37)|OV - Ovarian serous cystadenocarcinoma(86;1.5e-23)|GBM - Glioblastoma multiforme(42;1.61e-08)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00229)|BRCA - Breast invasive adenocarcinoma(365;0.00437)|STAD - Stomach adenocarcinoma(132;0.0134)|KIRC - Kidney renal clear cell carcinoma(229;0.034)|Lung(427;0.199)		CCGCCAGAAGGCCTGGGGCAG	0.682													24	7					0	0	0.003330	0	0
TNFRSF14	8764	broad.mit.edu	37	1	2494649	2494649	+	Missense_Mutation	SNP	C	G	G	rs143633292	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:2494649C>G	uc001ajr.2	+	8	1088	c.789C>G	c.(787-789)GAC>GAG	p.D263E	TNFRSF14_uc001ajt.1_3'UTR|TNFRSF14_uc001ajs.2_3'UTR	NM_003820	NP_003811	Q92956	TNR14_HUMAN	tumor necrosis factor receptor superfamily,	263	Cytoplasmic (Potential).				immune response|interspecies interaction between organisms|T cell costimulation		tumor necrosis factor receptor activity			kidney(1)	1	all_cancers(77;0.000158)|all_epithelial(69;8.01e-05)|all_lung(157;0.0212)|Lung NSC(156;0.0376)|Ovarian(185;0.0634)	all_epithelial(116;3.18e-20)|all_lung(118;1.67e-08)|Lung NSC(185;2.69e-06)|Breast(487;0.00147)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;1.1e-37)|OV - Ovarian serous cystadenocarcinoma(86;6.02e-23)|GBM - Glioblastoma multiforme(42;1.11e-08)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000326)|BRCA - Breast invasive adenocarcinoma(365;0.00435)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.199)		CCCCTCCGGACGTCACCACGG	0.622			Mis|N|F		follicular lymphoma								65	10					0	0	0.014410	0	0
CHD5	26038	broad.mit.edu	37	1	6209357	6209357	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:6209357C>T	uc001amb.1	-	8	1210	c.1110G>A	c.(1108-1110)CTG>CTA	p.L370L	CHD5_uc001amc.1_5'Flank	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	370	PHD-type 1.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCTCTGGGTCCAGGCATACGA	0.657													8	14					0	0	0.003080	0	0
UBE4B	10277	broad.mit.edu	37	1	10195157	10195157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:10195157C>T	uc001aqs.3	+	16	2850	c.2137C>T	c.(2137-2139)CAC>TAC	p.H713Y	UBE4B_uc001aqr.3_Missense_Mutation_p.H584Y|UBE4B_uc010oai.1_RNA|UBE4B_uc010oaj.1_Missense_Mutation_p.H168Y|UBE4B_uc001aqt.1_Missense_Mutation_p.H53Y	NM_001105562	NP_001099032	O95155	UBE4B_HUMAN	ubiquitination factor E4B isoform 1	713					apoptosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to UV	cytoplasm|ubiquitin ligase complex	enzyme binding			ovary(2)|skin(2)	4		all_lung(284;1.13e-05)|Lung NSC(185;1.74e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0268)|Colorectal(212;1.42e-07)|COAD - Colon adenocarcinoma(227;2.77e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000435)|Kidney(185;0.000482)|KIRC - Kidney renal clear cell carcinoma(229;0.00164)|STAD - Stomach adenocarcinoma(132;0.0117)|READ - Rectum adenocarcinoma(331;0.046)		GTATATTTTTCACCCAAGATG	0.418													20	7					0	0	0.007413	0	0
MASP2	10747	broad.mit.edu	37	1	11106674	11106674	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:11106674G>A	uc001aru.2	-	3	372	c.351C>T	c.(349-351)TTC>TTT	p.F117F	MASP2_uc001arv.2_Silent_p.F117F|MASP2_uc001arw.2_Silent_p.F117F|MASP2_uc001arx.1_Silent_p.F117F	NM_006610	NP_006601	O00187	MASP2_HUMAN	mannan-binding lectin serine protease 2 isoform	117	CUB 1.				complement activation, classical pathway|complement activation, lectin pathway|proteolysis	extracellular region	calcium ion binding|calcium-dependent protein binding|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4	Ovarian(185;0.249)	Lung NSC(185;1.04e-05)|all_lung(284;1.31e-05)|Renal(390;0.000147)|Colorectal(325;0.00205)|Breast(348;0.00262)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)	STAD - Stomach adenocarcinoma(5;0.071)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.12e-07)|COAD - Colon adenocarcinoma(227;7.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|Kidney(185;0.000722)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|READ - Rectum adenocarcinoma(331;0.0487)|STAD - Stomach adenocarcinoma(313;0.192)		AGTCGGAGCGGAAGGTAATGT	0.627													25	2					0	0	0.003330	0	0
AADACL4	343066	broad.mit.edu	37	1	12711318	12711318	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:12711318C>T	uc001auf.2	+	2	345	c.345C>T	c.(343-345)ATC>ATT	p.I115I		NM_001013630	NP_001013652	Q5VUY2	ADCL4_HUMAN	arylacetamide deacetylase-like 4	115	Lumenal (Potential).					integral to membrane	carboxylesterase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000937)|all_lung(284;0.00122)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.81e-07)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0384)		GGCGAGGCATCATCTTCTACC	0.577													27	5					0	0	0.006320	0	0
AADACL3	126767	broad.mit.edu	37	1	12785267	12785267	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:12785267C>T	uc009vnn.1	+	4	590	c.357C>T	c.(355-357)TCC>TCT	p.S119S	AADACL3_uc001aug.1_Silent_p.S49S	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	119							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		TCCTGAAGTCCCTGGATGCAT	0.512													49	69					0	0	0.014410	0	0
NBPF1	55672	broad.mit.edu	37	1	16918441	16918441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:16918441G>A	uc009vos.1	-	7	964	c.76C>T	c.(76-78)CCC>TCC	p.P26S	NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	26						cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GCCAGCTGGGGGCGCAATTTC	0.498													143	764					0	0	0.014410	0	0
MST1P2	11209	broad.mit.edu	37	1	16976743	16976743	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:16976743C>T	uc010och.1	+	14		c.2464C>T			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						CCAGCCTTGACGCCATATGCT	0.393													14	83					0	0	0.014323	0	0
ACTL8	81569	broad.mit.edu	37	1	18152483	18152483	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:18152483G>A	uc001bat.2	+	3	786	c.570G>A	c.(568-570)AAG>AAA	p.K190K		NM_030812	NP_110439	Q9H568	ACTL8_HUMAN	actin-like 8	190						cytoplasm|cytoskeleton				ovary(4)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|Breast(348;0.00186)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00583)|BRCA - Breast invasive adenocarcinoma(304;6.43e-06)|Kidney(64;0.000258)|KIRC - Kidney renal clear cell carcinoma(64;0.00348)|STAD - Stomach adenocarcinoma(196;0.00652)|READ - Rectum adenocarcinoma(331;0.0698)|Lung(427;0.201)		GTCTCTTTAAGGAAGATTGCG	0.602											OREG0013157	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	39	5					0	0	0.007835	0	0
Unknown	0	broad.mit.edu	37	1	21752760	21752760	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:21752760C>T	uc001bep.1	-	3		c.216G>A								Homo sapiens cDNA FLJ25572 fis, clone JTH05111.																		ACGTGTTCTTCCTCCAATGAG	0.453													27	28					0	0	0.003755	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26877903	26877903	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:26877903G>A	uc001bmr.1	+	5	486	c.323G>A	c.(322-324)CGG>CAG	p.R108Q	RPS6KA1_uc010ofe.1_Missense_Mutation_p.R16Q|RPS6KA1_uc010off.1_Missense_Mutation_p.R92Q|RPS6KA1_uc001bms.1_Missense_Mutation_p.R117Q|RPS6KA1_uc009vsl.1_5'UTR	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	108	Protein kinase 1.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		GACCGCGTCCGGACCAAGATG	0.552													35	7					0	0	0.004289	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33960610	33960610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:33960610C>T	uc001bxj.3	+	8	2833	c.2666C>T	c.(2665-2667)GCC>GTC	p.A889V	ZSCAN20_uc009vui.2_Missense_Mutation_p.A888V	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	889	C2H2-type 5.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				AAGAGCTCTGCCCTCATTAGT	0.468													126	12					0	0	0.014410	0	0
CSMD2	114784	broad.mit.edu	37	1	34049348	34049348	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:34049348G>A	uc001bxn.1	-	48	7169	c.7140C>T	c.(7138-7140)TTC>TTT	p.F2380F	CSMD2_uc001bxm.1_Silent_p.F2378F	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2380	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCAGGTCTGGAACTGGGGAT	0.502													48	58					0	0	0.013114	0	0
CSMD2	114784	broad.mit.edu	37	1	34076734	34076734	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:34076734G>A	uc001bxn.1	-	41	6159	c.6130C>T	c.(6130-6132)CCA>TCA	p.P2044S	CSMD2_uc001bxm.1_Missense_Mutation_p.P2084S|CSMD2_uc001bxo.1_Missense_Mutation_p.P957S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2044	CUB 12.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGGGAGCTTGGAAGCTCGCTT	0.557													76	9					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	1	43353113	43353113	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:43353113G>A	uc001cij.1	+	4		c.1015G>A								Homo sapiens cDNA clone IMAGE:5170739.																		GCTTGAGGATGAAGTTCCTGC	0.667													26	5					0	0	0.003954	0	0
SLC2A1	6513	broad.mit.edu	37	1	43392771	43392771	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:43392771G>T	uc001cik.2	-	10	1945	c.1420C>A	c.(1420-1422)CAA>AAA	p.Q474K		NM_006516	NP_006507	P11166	GTR1_HUMAN	solute carrier family 2 (facilitated glucose	474	Cytoplasmic (Potential).				carbohydrate metabolic process|energy reserve metabolic process|regulation of insulin secretion|water-soluble vitamin metabolic process	integral to membrane|melanosome|membrane fraction|midbody	D-glucose transmembrane transporter activity|dehydroascorbic acid transporter activity			central_nervous_system(2)|pancreas(2)|ovary(1)	5	Ovarian(52;0.00579)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0122)			Etomidate(DB00292)	TTGTCACTTTGGCTGGCTCCC	0.597													34	42					1.62565e-12	1.71555e-12	0.012213	1	0
TNNI3K	51086	broad.mit.edu	37	1	74905264	74905264	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:74905264G>A	uc001dgf.1	+	20	2020	c.1969G>A	c.(1969-1971)GAA>AAA	p.E657K	TNNI3K_uc001dgd.2_Missense_Mutation_p.E758K|TNNI3K_uc001dge.1_Missense_Mutation_p.E758K	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	657	Protein kinase.					cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						GTGTCTGTGGGAAATTCTCAC	0.458													61	6					0	0	0.014410	0	0
C1orf173	127254	broad.mit.edu	37	1	75055579	75055579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:75055579C>T	uc001dgg.2	-	12	2131	c.1912G>A	c.(1912-1914)GAA>AAA	p.E638K	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.E432K	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	638	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						TCTAAGGATTCCTCAATTGGA	0.413													36	48					0	0	0.004878	0	0
SLC44A5	204962	broad.mit.edu	37	1	75707698	75707698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:75707698G>A	uc001dgu.2	-	9	664	c.520C>T	c.(520-522)CCC>TCC	p.P174S	SLC44A5_uc001dgt.2_Missense_Mutation_p.P174S|SLC44A5_uc001dgs.2_Missense_Mutation_p.P132S|SLC44A5_uc001dgr.2_Missense_Mutation_p.P132S|SLC44A5_uc010oqz.1_Missense_Mutation_p.P213S|SLC44A5_uc010ora.1_Missense_Mutation_p.P168S|SLC44A5_uc010orb.1_Missense_Mutation_p.P44S	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	174	Extracellular (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						GGTTTGCTGGGAAAAATCGCT	0.303													24	49					0	0	0.007291	0	0
MIR197	406974	broad.mit.edu	37	1	110141570	110141570	+	RNA	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:110141570C>A	hsa-mir-197|MI0000239	+			c.56C>A			uc010ovq.1_RNA																	0						CCTTCACCACCTTCTCCACCC	0.567													33	47					8.4185e-14	8.91641e-14	0.012213	1	0
NRAS	4893	broad.mit.edu	37	1	115256530	115256530	+	Missense_Mutation	SNP	G	T	T	rs121913254		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:115256530G>T	uc009wgu.2	-	3	435	c.181C>A	c.(181-183)CAA>AAA	p.Q61K		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACTCTTCTTGTCCAGCTGTA	0.458	Q61K(HT1080_SOFT_TISSUE)|Q61K(OCILY19_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(SKNAS_AUTONOMIC_GANGLIA)|Q61K(HCC15_LUNG)|Q61K(TYKNU_OVARY)|Q61K(SKNSH_AUTONOMIC_GANGLIA)|Q61K(HUT78_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(NCIH2087_LUNG)|Q61K(CHP212_AUTONOMIC_GANGLIA)|Q61K(HS944T_SKIN)|Q61K(M07E_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61K(HS936T_SKIN)|Q61K(NCIH1299_LUNG)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			144	19					7.99487e-62	8.60872e-62	0.014410	1	0
VANGL1	81839	broad.mit.edu	37	1	116228028	116228028	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:116228028C>T	uc001efv.1	+	7	1465	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	VANGL1_uc009wgy.1_Silent_p.F396F	NM_138959	NP_620409	Q8TAA9	VANG1_HUMAN	vang-like 1	398	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane	protein binding			central_nervous_system(1)	1	Lung SC(450;0.211)	all_cancers(81;1.24e-06)|all_epithelial(167;1.02e-06)|all_lung(203;7.95e-06)|Lung NSC(69;4.97e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		AGGCCATTTTCCCCTCCATGG	0.612													40	5					0	0	0.008740	0	0
SLC22A15	55356	broad.mit.edu	37	1	116562312	116562312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:116562312G>A	uc001egb.3	+	3	540	c.410G>A	c.(409-411)GGA>GAA	p.G137E	SLC22A15_uc001ega.2_Missense_Mutation_p.G137E	NM_018420	NP_060890	Q8IZD6	S22AF_HUMAN	solute carrier family 22, member 15	137					ion transport	integral to membrane	transmembrane transporter activity			large_intestine(2)	2	Lung SC(450;0.184)	all_cancers(81;3.17e-06)|all_epithelial(167;2.32e-06)|all_lung(203;9.81e-06)|Lung NSC(69;5.94e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		GATCGCTTCGGAAGGAAAAAA	0.383													15	17					0	0	0.003163	0	0
FAM46C	54855	broad.mit.edu	37	1	118165614	118165614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:118165614C>T	uc001ehe.2	+	2	323	c.124C>T	c.(124-126)CCA>TCA	p.P42S		NM_017709	NP_060179	Q5VWP2	FA46C_HUMAN	hypothetical protein LOC54855	42											0	Lung SC(450;0.225)	all_cancers(81;0.000101)|all_lung(203;3.4e-06)|all_epithelial(167;4.98e-06)|Lung NSC(69;2.33e-05)		Lung(183;0.0576)|LUSC - Lung squamous cell carcinoma(189;0.192)|Colorectal(144;0.247)		AGGCAACTTTCCAACCTTGGA	0.572										Multiple Myeloma(3;1.13e-06)			55	9					0	0	0.014410	0	0
GDAP2	54834	broad.mit.edu	37	1	118424453	118424453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:118424453G>A	uc001ehf.2	-	12	1593	c.1294C>T	c.(1294-1296)CGT>TGT	p.R432C	GDAP2_uc001ehg.2_Missense_Mutation_p.R432C	NM_017686	NP_060156	Q9NXN4	GDAP2_HUMAN	ganglioside induced differentiation associated	432	CRAL-TRIO.									ovary(2)	2		all_cancers(81;0.0156)|all_lung(203;5.81e-05)|Lung NSC(69;0.000446)|all_epithelial(167;0.00295)		Lung(183;0.0583)|LUSC - Lung squamous cell carcinoma(189;0.194)		ACCTTTGAACGAAATGTGGGA	0.328													41	6					0	0	0.014410	0	0
HAO2	51179	broad.mit.edu	37	1	119929351	119929351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:119929351G>A	uc001ehq.1	+	6	1020	c.668G>A	c.(667-669)GGG>GAG	p.G223E	HAO2_uc001ehr.1_Missense_Mutation_p.G223E	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	223	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		ATCCTGAAAGGGATTTTGACA	0.458													88	9					0	0	0.014410	0	0
NBPF9	400818	broad.mit.edu	37	1	144619403	144619403	+	Missense_Mutation	SNP	A	G	G	rs4067646		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:144619403A>G	uc009wig.1	+	7	626	c.550A>G	c.(550-552)AAA>GAA	p.K184E	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.K184E|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Missense_Mutation_p.K115E|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Missense_Mutation_p.K115E|NBPF9_uc010oyg.1_Missense_Mutation_p.K149E|NBPF9_uc009wii.1_Intron	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	184	NBPF 1.					cytoplasm					0						GAAAGTGCAGAAATCATCTGC	0.413													5	254					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	1	148891702	148891702	+	RNA	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:148891702T>C	uc009wkv.1	+	9		c.1004T>C								Homo sapiens cDNA, FLJ17483.																		AGACATCCAATCAGAACATTC	0.358													8	33					0	0	0.004482	0	0
HIST2H2BF	440689	broad.mit.edu	37	1	149783702	149783702	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:149783702G>A	uc001esr.2	-	1	227	c.177C>T	c.(175-177)GCC>GCT	p.A59A	HIST2H2BF_uc010pbj.1_Silent_p.A59A|HIST2H2BF_uc010pbk.1_Silent_p.A59A	NM_001024599	NP_001019770	Q5QNW6	H2B2F_HUMAN	histone cluster 2, H2bf isoform a	59					nucleosome assembly	nucleosome|nucleus	DNA binding				0	Breast(34;0.0124)|all_hematologic(923;0.127)					TGATGCCCATGGCCTTGGACG	0.607													72	102					0	0	0.014410	0	0
TDRKH	11022	broad.mit.edu	37	1	151751311	151751311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:151751311C>T	uc009wnb.1	-	6	915	c.733G>A	c.(733-735)GAG>AAG	p.E245K	TDRKH_uc001eyy.2_Missense_Mutation_p.E21K|TDRKH_uc001ezb.3_Missense_Mutation_p.E241K|TDRKH_uc001ezc.3_Missense_Mutation_p.E200K|TDRKH_uc001eza.3_Missense_Mutation_p.E245K|TDRKH_uc001ezd.3_Missense_Mutation_p.E245K|TDRKH_uc010pdn.1_Missense_Mutation_p.E21K	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	245							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			GCAGTCGGCTCCATGCTAGAA	0.542													54	62					0	0	0.014410	0	0
TCHHL1	126637	broad.mit.edu	37	1	152058877	152058877	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:152058877C>T	uc001ezo.1	-	3	1346	c.1281G>A	c.(1279-1281)CAG>CAA	p.Q427Q		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	427							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTTGGAGTTCCTGATACTTCC	0.468													59	79					0	0	0.014410	0	0
RPTN	126638	broad.mit.edu	37	1	152127305	152127305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:152127305C>T	uc001ezs.1	-	3	2335	c.2270G>A	c.(2269-2271)CGA>CAA	p.R757Q		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	757	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TTGCCTGTCTCGTCTCTGATG	0.512													174	218					0	0	0.014410	0	0
RPTN	126638	broad.mit.edu	37	1	152128157	152128157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:152128157G>A	uc001ezs.1	-	3	1483	c.1418C>T	c.(1417-1419)TCC>TTC	p.S473F		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	473	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACTGTAGTGGGAACTCTGGCC	0.512													298	428					0	0	0.014410	0	0
LCE2B	26239	broad.mit.edu	37	1	152659456	152659456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:152659456C>T	uc001fai.2	+	2	191	c.137C>T	c.(136-138)TCT>TTT	p.S46F		NM_014357	NP_055172	O14633	LCE2B_HUMAN	late cornified envelope 2B	46	Cys-rich.				keratinization					ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			GCAGTCTCTTCTTGCTGTGGT	0.627													70	101					0	0	0.014410	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153303307	153303307	+	Missense_Mutation	SNP	C	T	T	rs147105602		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:153303307C>T	uc001fbo.2	-	9	1123	c.1058G>A	c.(1057-1059)CGA>CAA	p.R353Q	PGLYRP4_uc001fbp.2_Missense_Mutation_p.R349Q	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	353	Interaction with murein.				defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding	p.R353Q(1)		ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGACAAGGTTCGGGCCACATC	0.562													43	49					0	0	0.009718	0	0
GATAD2B	57459	broad.mit.edu	37	1	153800700	153800700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:153800700G>A	uc001fdb.3	-	2	368	c.124C>T	c.(124-126)CGT>TGT	p.R42C		NM_020699	NP_065750	Q8WXI9	P66B_HUMAN	GATA zinc finger domain containing 2B	42						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0	all_lung(78;1.34e-32)|Lung NSC(65;1.04e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			ATTTTCAGACGTTCCATGGCC	0.502													65	115					0	0	0.014410	0	0
NUP210L	91181	broad.mit.edu	37	1	153998119	153998119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:153998119C>T	uc001fdw.2	-	30	4093	c.4021G>A	c.(4021-4023)GAA>AAA	p.E1341K	NUP210L_uc009woq.2_Missense_Mutation_p.E250K|NUP210L_uc010peh.1_Missense_Mutation_p.E1341K	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1341						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			AGGAGCCCTTCACCATCCTCC	0.478													94	159					0	0	0.014410	0	0
NUP210L	91181	broad.mit.edu	37	1	154002385	154002386	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:154002385_154002386TC>AT	uc001fdw.2	-	28	3913_3914	c.3841_3842GA>AT	c.(3841-3843)GAA>ATA	p.E1281I	NUP210L_uc009woq.2_Missense_Mutation_p.E190I|NUP210L_uc010peh.1_Missense_Mutation_p.E1281I	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	1281						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			GATCTGTACTTCATCAGAGAGT	0.401													20	30					0	0	0.004672	0	0
NUP210L	91181	broad.mit.edu	37	1	154108432	154108432	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:154108432C>T	uc001fdw.2	-	7	939	c.867G>A	c.(865-867)CTG>CTA	p.L289L	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Silent_p.L289L	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	289						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TATAATGTTCCAGGGGAAATT	0.383													9	24					0	0	0.004482	0	0
FAM189B	10712	broad.mit.edu	37	1	155220423	155220423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:155220423G>A	uc001fjm.2	-	9	1760	c.1154C>T	c.(1153-1155)CCC>CTC	p.P385L	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_Missense_Mutation_p.P187L|FAM189B_uc001fjn.2_Missense_Mutation_p.P289L|FAM189B_uc001fjo.2_Missense_Mutation_p.P367L|FAM189B_uc001fjp.2_Intron	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	385						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						TTCCTCGAAGGGGCCCCGCAG	0.701													13	21					0	0	0.004990	0	0
GON4L	54856	broad.mit.edu	37	1	155735348	155735348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:155735348G>A	uc001flz.2	-	21	4013	c.3916C>T	c.(3916-3918)CCT>TCT	p.P1306S	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.P1306S|GON4L_uc009wrh.1_Missense_Mutation_p.P1306S|GON4L_uc001fma.1_Missense_Mutation_p.P1306S|GON4L_uc001fmb.3_Missense_Mutation_p.P502S|GON4L_uc001fmc.2_Missense_Mutation_p.P1306S|GON4L_uc001fmd.3_Missense_Mutation_p.P1306S|GON4L_uc009wri.2_Missense_Mutation_p.P892S	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1306					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					ATGCCCTGAGGGAGCGGCTCC	0.517													20	46					0	0	0.010504	0	0
GON4L	54856	broad.mit.edu	37	1	155742989	155742989	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:155742989G>A	uc001flz.2	-	18	2460	c.2363C>T	c.(2362-2364)CCC>CTC	p.P788L	GON4L_uc001fly.1_Missense_Mutation_p.P788L|GON4L_uc009wrh.1_Missense_Mutation_p.P788L|GON4L_uc001fma.1_Missense_Mutation_p.P788L|GON4L_uc001fmb.3_5'UTR|GON4L_uc001fmc.2_Missense_Mutation_p.P788L|GON4L_uc001fmd.3_Missense_Mutation_p.P788L|GON4L_uc009wri.2_Missense_Mutation_p.P374L	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	788					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TGGCAAACAGGGAAATTCATT	0.408													17	30					0	0	0.006122	0	0
BCAN	63827	broad.mit.edu	37	1	156621460	156621460	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:156621460G>A	uc001fpp.2	+	7	1612	c.1276G>A	c.(1276-1278)GAG>AAG	p.E426K	BCAN_uc001fpo.2_Missense_Mutation_p.E426K	NM_021948	NP_068767	Q96GW7	PGCB_HUMAN	brevican isoform 1	426	Glu-rich.				cell adhesion	anchored to membrane|proteinaceous extracellular matrix	hyaluronic acid binding|sugar binding			ovary(1)|pancreas(1)	2	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGACCCAGCAGAGGCCCCTAG	0.562													56	61					0	0	0.014410	0	0
NES	10763	broad.mit.edu	37	1	156640816	156640816	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:156640816G>T	uc001fpq.2	-	4	3297	c.3164C>A	c.(3163-3165)GCT>GAT	p.A1055D		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1055	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCCCTGGGGAGCCTGGAGGCC	0.662													44	38					9.39024e-22	1.00185e-21	0.009718	1	0
NTRK1	4914	broad.mit.edu	37	1	156849090	156849090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:156849090G>A	uc001fqh.1	+	15	2038	c.1982G>A	c.(1981-1983)GGA>GAA	p.G661E	NTRK1_uc001fqf.1_Missense_Mutation_p.G625E|NTRK1_uc009wsi.1_Missense_Mutation_p.G360E|NTRK1_uc001fqi.1_Missense_Mutation_p.G655E|NTRK1_uc009wsk.1_Missense_Mutation_p.G658E	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	661	Cytoplasmic (Potential).|Protein kinase.				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	GTGGGCCAGGGACTGGTGGTC	0.587			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			32	38					0	0	0.010818	0	0
CD5L	922	broad.mit.edu	37	1	157803038	157803038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:157803038C>T	uc001frk.3	-	5	1126	c.983G>A	c.(982-984)AGA>AAA	p.R328K		NM_005894	NP_005885	O43866	CD5L_HUMAN	CD5 molecule-like precursor	328	SRCR 3.				apoptosis|cellular defense response	extracellular space|membrane	scavenger receptor activity			ovary(1)	1	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CCCCCAAAATCTGTGCTGGCA	0.562													50	44					0	0	0.014410	0	0
CD1C	911	broad.mit.edu	37	1	158262110	158262110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:158262110C>T	uc001fru.2	+	3	857	c.565C>T	c.(565-567)CTC>TTC	p.L189F	CD1C_uc001frv.2_5'UTR	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	189	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding			ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					CCCCCGATTTCTCTTGGGTCT	0.453													135	148					0	0	0.014410	0	0
NR1I3	9970	broad.mit.edu	37	1	161200676	161200676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:161200676C>T	uc001fzx.2	-	8	1059	c.856G>A	c.(856-858)GAT>AAT	p.D286N	TOMM40L_uc009wuf.1_Intron|NR1I3_uc001fzf.2_Missense_Mutation_p.D287N|NR1I3_uc001fzg.2_Missense_Mutation_p.D258N|NR1I3_uc001fzh.2_Missense_Mutation_p.D258N|NR1I3_uc001fzi.2_Missense_Mutation_p.D253N|NR1I3_uc001fzj.2_Missense_Mutation_p.D253N|NR1I3_uc001fzk.2_Missense_Mutation_p.D214N|NR1I3_uc001fzl.2_Missense_Mutation_p.D214N|NR1I3_uc001fzm.2_Missense_Mutation_p.D207N|NR1I3_uc001fzn.2_Missense_Mutation_p.D76N|NR1I3_uc009wug.2_Missense_Mutation_p.D120N|NR1I3_uc001fzp.2_Missense_Mutation_p.D291N|NR1I3_uc001fzo.2_Missense_Mutation_p.D115N|NR1I3_uc001fzq.2_Silent_p.L139L|NR1I3_uc001fzr.2_Silent_p.L139L|NR1I3_uc001fzs.2_Missense_Mutation_p.D76N|NR1I3_uc001fzt.2_Missense_Mutation_p.D76N|NR1I3_uc001fzu.2_Silent_p.L110L|NR1I3_uc001fzv.2_Silent_p.L110L|NR1I3_uc001fzw.2_Missense_Mutation_p.D286N|NR1I3_uc001fzy.2_Missense_Mutation_p.D282N|NR1I3_uc001fzz.2_Missense_Mutation_p.D248N|NR1I3_uc001gaa.2_Missense_Mutation_p.D243N|NR1I3_uc001gab.2_Missense_Mutation_p.D243N|NR1I3_uc001gac.2_Missense_Mutation_p.D262N|NR1I3_uc010pkm.1_Missense_Mutation_p.D253N	NM_001077480	NP_001070948	Q14994	NR1I3_HUMAN	constitutive androstane receptor isoform 2	286					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	androgen receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(1)|skin(1)	2	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TGCAGCTGATCAATCTCATCT	0.607													18	29					0	0	0.010504	0	0
HSPA6	3310	broad.mit.edu	37	1	161496150	161496150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:161496150G>A	uc001gap.2	+	2	2362	c.1702G>A	c.(1702-1704)GAC>AAC	p.D568N	HSPA6_uc001gaq.2_Missense_Mutation_p.D568N	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	568					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TCCCGAAGAGGACAGGCGCAA	0.537													7	8					0	0	0.001984	0	0
UHMK1	127933	broad.mit.edu	37	1	162487890	162487890	+	Splice_Site	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:162487890A>G	uc001gcc.1	+	7	1161	c.1025_splice	c.e7-2	p.D342_splice	UHMK1_uc001gcb.1_Splice_Site_p.D268_splice|UHMK1_uc009wuu.1_Intron	NM_175866	NP_787062	Q8TAS1	UHMK1_HUMAN	kinase interacting stathmin						cell cycle arrest|neuron projection development|peptidyl-serine phosphorylation|positive regulation of translational initiation|protein autophosphorylation|regulation of protein export from nucleus	axon|dendrite cytoplasm|neuronal RNA granule|nucleus	protein binding|protein serine/threonine kinase activity|ribonucleoprotein binding|RNA binding				0	all_hematologic(112;0.115)		BRCA - Breast invasive adenocarcinoma(70;0.126)			TTTAATAATCAGATGTTGTAG	0.308													14	17					0	0	0.003163	0	0
ILDR2	387597	broad.mit.edu	37	1	166927084	166927084	+	Nonsense_Mutation	SNP	G	A	A	rs141350747		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:166927084G>A	uc001gdx.1	-	2	357	c.301C>T	c.(301-303)CGA>TGA	p.R101*		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	101	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						GCTACTACTCGAACAGTCCTC	0.498													39	54					0	0	0.006230	0	0
ILDR2	387597	broad.mit.edu	37	1	166927321	166927321	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:166927321G>A	uc001gdx.1	-	2	120	c.64C>T	c.(64-66)CAG>TAG	p.Q22*		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	22	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						ACTGTGACCTGAAGGCCTTCG	0.517													43	71					0	0	0.008740	0	0
ADCY10	55811	broad.mit.edu	37	1	167792263	167792263	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:167792263T>C	uc001ger.2	-	29	4449	c.4151A>G	c.(4150-4152)GAC>GGC	p.D1384G	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Missense_Mutation_p.D1292G|ADCY10_uc010plj.1_Missense_Mutation_p.D1231G	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1384					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						AAGCAGGATGTCCAAGCAGAC	0.498													27	26					0	0	0.006320	0	0
PRRX1	5396	broad.mit.edu	37	1	170688913	170688913	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:170688913G>A	uc001ghf.2	+	2	335	c.288G>A	c.(286-288)AGG>AGA	p.R96R	PRRX1_uc001ghe.2_Silent_p.R96R	NM_022716	NP_073207	P54821	PRRX1_HUMAN	paired mesoderm homeobox 1 isoform pmx-1b	96	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGCAGCGAAGGAATAGGACAA	0.473													16	23					0	0	0.004007	0	0
FASLG	356	broad.mit.edu	37	1	172634863	172634863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:172634863G>A	uc001gis.2	+	4	710	c.553G>A	c.(553-555)GAA>AAA	p.E185K	FASLG_uc001git.2_3'UTR	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	185	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TGTGATCAATGAAACTGGGCT	0.463													39	37					0	0	0.004289	0	0
TNFSF4	7292	broad.mit.edu	37	1	173176313	173176313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:173176313C>T	uc001giw.2	-	1	159	c.3G>A	c.(1-3)ATG>ATA	p.M1I	TNFSF4_uc001giv.2_5'Flank	NM_003326	NP_003317	P23510	TNFL4_HUMAN	tumor necrosis factor (ligand) superfamily,	1	Cytoplasmic (Potential).				acute inflammatory response|cellular response to lipopolysaccharide|cellular response to prostaglandin E stimulus|chemokine (C-C motif) ligand 11 production|defense response to nematode|interleukin-4-dependent isotype switching to IgE isotypes|memory T cell activation|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of regulatory T cell differentiation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T-helper 1 cell differentiation|negative regulation of transcription, DNA-dependent|positive regulation of alpha-beta T cell proliferation|positive regulation of B cell activation|positive regulation of immunoglobulin mediated immune response|positive regulation of immunoglobulin secretion|positive regulation of inflammatory response|positive regulation of interferon-gamma production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 production|positive regulation of interleukin-13 production|positive regulation of interleukin-4 production|positive regulation of interleukin-6 production|positive regulation of memory T cell differentiation|positive regulation of T cell cytokine production|positive regulation of T-helper 2 cell differentiation|positive regulation of type 2 immune response|response to virus|signal transduction|T-helper 2 cell activation	cell surface|extracellular space|integral to plasma membrane	cytokine activity			central_nervous_system(1)	1						GGACCCTTTCCATCTTCACAA	0.473													28	46					0	0	0.008361	0	0
SLC9A11	284525	broad.mit.edu	37	1	173494046	173494046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:173494046G>A	uc001giz.2	-	20	2809	c.2386C>T	c.(2386-2388)CGT>TGT	p.R796C	SLC9A11_uc009wwe.2_Missense_Mutation_p.R354C|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	796					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ACAACATCACGACCCTCATGC	0.313													28	35					0	0	0.006320	0	0
SEC16B	89866	broad.mit.edu	37	1	177915597	177915597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:177915597G>A	uc001gli.1	-	14	1823	c.1733C>T	c.(1732-1734)ACC>ATC	p.T578I	SEC16B_uc001glk.1_Missense_Mutation_p.T255I|SEC16B_uc009wwy.1_Missense_Mutation_p.T133I|SEC16B_uc001glh.1_Missense_Mutation_p.T237I|SEC16B_uc009wwz.1_Missense_Mutation_p.T237I|SEC16B_uc001glj.1_Missense_Mutation_p.T579I|SEC16B_uc001gll.3_Missense_Mutation_p.T579I	NM_033127	NP_149118	Q96JE7	SC16B_HUMAN	leucine zipper transcription regulator 2	578					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|Golgi membrane				ovary(3)|central_nervous_system(1)	4						TGTCTTCACGGTGTAGTGGCC	0.547											OREG0014008	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	6					0	0	0.003080	0	0
ZNF648	127665	broad.mit.edu	37	1	182025636	182025636	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:182025636A>T	uc001goz.2	-	2	1718	c.1510T>A	c.(1510-1512)TTC>ATC	p.F504I		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	504	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCACAGAGGAATCCCTTCTCC	0.622													8	13					0	0	0.006214	0	0
CFHR4	10877	broad.mit.edu	37	1	196881899	196881899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:196881899G>A	uc001gto.2	+	3	355	c.286G>A	c.(286-288)GAA>AAA	p.E96K	CFHR4_uc009wyy.2_Missense_Mutation_p.E342K|CFHR4_uc001gtp.2_Missense_Mutation_p.E343K	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	96	Sushi 2.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						TATAGAAATTGAAAATGGATT	0.249													4	11					0	0	0.001168	0	0
KIF14	9928	broad.mit.edu	37	1	200550410	200550410	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:200550410C>A	uc010ppk.1	-	20	3693	c.3254G>T	c.(3253-3255)TGG>TTG	p.W1085L	KIF14_uc010ppj.1_Missense_Mutation_p.W594L	NM_014875	NP_055690	Q15058	KIF14_HUMAN	kinesin family member 14	1085	Required for CIT-binding.				microtubule-based movement	cytoplasm|microtubule|nucleus|spindle	ATP binding|microtubule motor activity|protein binding			breast(3)|ovary(2)|skin(2)	7						CATAGAGCTCCAAGTTGTCTG	0.333													36	37					8.16904e-11	8.61301e-11	0.007835	1	0
C1orf106	55765	broad.mit.edu	37	1	200868693	200868693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:200868693G>A	uc001gvo.2	+	3	433	c.403G>A	c.(403-405)GAG>AAG	p.E135K	C1orf106_uc010ppm.1_Missense_Mutation_p.E50K	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	135	Potential.									skin(2)|ovary(1)	3						GGCCTGCCTGGAGGAGCTGAG	0.647													7	8					0	0	0.003080	0	0
IGFN1	91156	broad.mit.edu	37	1	201190759	201190759	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:201190759G>A	uc001gwc.2	+	8	2338	c.1566G>A	c.(1564-1566)ACG>ACA	p.T522T	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CCACCTACACGGCCAAGGGGC	0.617													39	33					0	0	0.006230	0	0
GPR37L1	9283	broad.mit.edu	37	1	202097473	202097473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:202097473C>T	uc001gxj.2	+	2	1298	c.1235C>T	c.(1234-1236)ACC>ATC	p.T412I		NM_004767	NP_004758	O60883	ETBR2_HUMAN	G-protein coupled receptor 37 like 1 precursor	412	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|protein binding			ovary(1)|central_nervous_system(1)	2						GGCGCCATCACCCCAGTGCTG	0.582													26	28					0	0	0.007291	0	0
PIGR	5284	broad.mit.edu	37	1	207107923	207107923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:207107923G>A	uc001hez.2	-	6	1731	c.1547C>T	c.(1546-1548)GCC>GTC	p.A516V	PIGR_uc009xbz.2_Missense_Mutation_p.A516V	NM_002644	NP_002635	P01833	PIGR_HUMAN	polymeric immunoglobulin receptor precursor	516	Ig-like V-type 5.|Extracellular (Potential).					extracellular region|integral to plasma membrane	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GTTCACGAAGGCCTTGCTGGG	0.582													34	66					0	0	0.006999	0	0
CR1	1378	broad.mit.edu	37	1	207700144	207700144	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:207700144G>A	uc001hfy.2	+	6	1073	c.933G>A	c.(931-933)AGG>AGA	p.R311R	CR1_uc009xcl.1_Intron|CR1_uc001hfx.2_Silent_p.R311R|CR1_uc009xcj.1_Intron|CR1_uc009xck.1_Silent_p.R311R|CR1_uc010psh.1_5'Flank	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	311	Sushi 5.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GTACCCAAAGGGACAAGGACA	0.527													71	139					0	0	0.014410	0	0
PLXNA2	5362	broad.mit.edu	37	1	208234042	208234042	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:208234042G>A	uc001hgz.2	-	13	3485	c.2727C>T	c.(2725-2727)ATC>ATT	p.I909I		NM_025179	NP_079455	O75051	PLXA2_HUMAN	plexin A2 precursor	909	Extracellular (Potential).|IPT/TIG 1.				axon guidance	integral to membrane|intracellular|plasma membrane				ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.199)		GCTCAGCGATGATGTATTCCC	0.617													14	30					0	0	0.003163	0	0
SERTAD4	56256	broad.mit.edu	37	1	210415669	210415669	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:210415669G>A	uc001hhy.2	+	4	1237	c.1058G>A	c.(1057-1059)GGA>GAA	p.G353E	SERTAD4_uc009xcw.2_Missense_Mutation_p.G353E	NM_019605	NP_062551	Q9NUC0	SRTD4_HUMAN	SERTA domain containing 4	353							protein binding			ovary(1)|pancreas(1)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0237)|all cancers(67;0.127)		TGCAGCAAAGGAAGTAAAATA	0.368													17	30					0	0	0.010504	0	0
TRAF5	7188	broad.mit.edu	37	1	211545749	211545749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:211545749C>T	uc001hih.2	+	11	1439	c.1379C>T	c.(1378-1380)TCC>TTC	p.S460F	TRAF5_uc001hii.2_Missense_Mutation_p.S460F|TRAF5_uc010psx.1_Missense_Mutation_p.S471F|TRAF5_uc010psy.1_Missense_Mutation_p.S354F|TRAF5_uc001hij.2_Missense_Mutation_p.S460F	NM_004619	NP_004610	O00463	TRAF5_HUMAN	TNF receptor-associated factor 5	460	MATH.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis	CD40 receptor complex|centrosome|internal side of plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(2)|ovary(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00946)|all cancers(67;0.0808)|Epithelial(68;0.144)		TCACACCTGTCCCTATACTTT	0.557													34	78					0	0	0.004289	0	0
SPATA17	128153	broad.mit.edu	37	1	217975134	217975134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:217975134C>T	uc001hlh.1	+	9	973	c.947C>T	c.(946-948)CCT>CTT	p.P316L	SPATA17_uc001hli.2_Missense_Mutation_p.P316L	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	316						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		AAGTATGGTCCTATTTCTTAC	0.294													12	13					0	0	0.003163	0	0
FAM177B	400823	broad.mit.edu	37	1	222920392	222920392	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:222920392G>A	uc001hnt.2	+	4	476	c.210G>A	c.(208-210)TGG>TGA	p.W70*	uc001hnr.1_Intron|FAM177B_uc009xeb.2_RNA	NM_207468	NP_997351	A6PVY3	F177B_HUMAN	hypothetical protein LOC400823	70										ovary(1)	1						TACGATTTTGGGCAGGACGAA	0.373													31	39					0	0	0.003271	0	0
CDC42BPA	8476	broad.mit.edu	37	1	227192753	227192753	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:227192753G>A	uc001hqr.2	-	34	5755	c.4812C>T	c.(4810-4812)ATC>ATT	p.I1604I	CDC42BPA_uc001hqq.2_Silent_p.I903I|CDC42BPA_uc001hqs.2_Silent_p.I1523I|CDC42BPA_uc009xes.2_Silent_p.I1576I|CDC42BPA_uc010pvs.1_Silent_p.I1584I|CDC42BPA_uc001hqp.2_Silent_p.I822I|CDC42BPA_uc001hqt.2_Silent_p.I482I	NM_003607	NP_003598	Q5VT25	MRCKA_HUMAN	CDC42-binding protein kinase alpha isoform B	1617					actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm	ATP binding|identical protein binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(6)|breast(2)|stomach(1)|ovary(1)|pancreas(1)	11		all_cancers(173;0.156)|Prostate(94;0.0792)				GGGATTTGGTGATAGATGGAA	0.532													30	44					0	0	0.007291	0	0
GALNT2	2590	broad.mit.edu	37	1	230398393	230398393	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:230398393G>C	uc010pwa.1	+	12	1283	c.1211G>C	c.(1210-1212)AGA>ACA	p.R404T	GALNT2_uc010pvy.1_Missense_Mutation_p.R366T|GALNT2_uc010pvz.1_RNA|GALNT2_uc001htu.2_Missense_Mutation_p.R16T	NM_004481	NP_004472	Q10471	GALT2_HUMAN	polypeptide N-acetylgalactosaminyltransferase 2	404	Lumenal (Potential).				immunoglobulin biosynthetic process|protein O-linked glycosylation via serine|protein O-linked glycosylation via threonine	extracellular region|Golgi cisterna membrane|integral to Golgi membrane|perinuclear region of cytoplasm	manganese ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)	2	Breast(184;0.193)|Ovarian(103;0.249)	all_cancers(173;0.156)|Prostate(94;0.179)				CCTTCTGCTAGAAACGTTCCT	0.488													92	134					0	0	0.014410	0	0
C1orf131	128061	broad.mit.edu	37	1	231362502	231362503	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:231362502_231362503CC>TT	uc001hun.1	-	5	712_713	c.675_676GG>AA	c.(673-678)AAGGAA>AAAAAA	p.E226K	C1orf131_uc001hul.2_Missense_Mutation_p.E226K|C1orf131_uc001hum.2_Missense_Mutation_p.E225K|C1orf131_uc010pwd.1_Missense_Mutation_p.E225K	NM_152379	NP_689592	Q8NDD1	CA131_HUMAN	hypothetical protein LOC128061	226	Lys-rich.									central_nervous_system(1)|skin(1)	2	Breast(184;0.0871)	all_cancers(173;0.2)|Prostate(94;0.183)				TTTTCTTCTTCCTTTGCTGCCT	0.406													30	54					0	0	0.004672	0	0
NID1	4811	broad.mit.edu	37	1	236212001	236212001	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:236212001G>A	uc001hxo.2	-	2	616	c.514C>T	c.(514-516)CAG>TAG	p.Q172*	NID1_uc009xgd.2_Nonsense_Mutation_p.Q172*	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	172	NIDO.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	TTGCCTTTCTGGTCTGGGTCC	0.562													14	22					0	0	0.001855	0	0
RYR2	6262	broad.mit.edu	37	1	237947970	237947970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:237947970G>A	uc001hyl.1	+	90	13078	c.12958G>A	c.(12958-12960)GAA>AAA	p.E4320K	RYR2_uc010pya.1_Missense_Mutation_p.E735K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4320					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			AAGCCTCGTCGAAGGTGCTAA	0.517													27	36					0	0	0.009535	0	0
LOC100130331	100130331	broad.mit.edu	37	1	238090756	238090756	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:238090756G>A	uc010pyc.1	+	12		c.2262G>A				NR_027247				Homo sapiens mRNA; cDNA DKFZp434B2115 (from clone DKFZp434B2115).												0						CCCAGCGGGAGATCATGCCCC	0.607													5	5					0	0	0.000602	0	0
OR14A16	284532	broad.mit.edu	37	1	247978344	247978344	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:247978344C>T	uc001idm.1	-	1	688	c.688G>A	c.(688-690)GAA>AAA	p.E230K		NM_001001966	NP_001001966	Q8NHC5	O14AG_HUMAN	olfactory receptor, family 14, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						GACTGGCCTTCTGTGGAAGGG	0.408													15	14					0	0	0.004007	0	0
OR2L2	26246	broad.mit.edu	37	1	248201969	248201969	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:248201969C>T	uc001idw.2	+	1	496	c.400C>T	c.(400-402)CGT>TGT	p.R134C	OR2L13_uc001ids.2_Intron	NM_001004686	NP_001004686	Q8NH16	OR2L2_HUMAN	olfactory receptor, family 2, subfamily L,	134	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			CTATCCCATCCGTATAAGCAA	0.428													43	58					0	0	0.008740	0	0
OR14C36	127066	broad.mit.edu	37	1	248512159	248512159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:248512159C>T	uc010pzl.1	+	1	83	c.83C>T	c.(82-84)TCC>TTC	p.S28F		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CATTCTGCATCCTTCTTTATG	0.443													37	54					0	0	0.006230	0	0
OR2T4	127074	broad.mit.edu	37	1	248525497	248525497	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr1:248525497G>A	uc001ieh.1	+	1	615	c.615G>A	c.(613-615)GAG>GAA	p.E205E		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	205	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GATCCCGGGAGATTCATCATT	0.498													63	96					0	0	0.014410	0	0
DHTKD1	55526	broad.mit.edu	37	10	12143169	12143169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:12143169G>A	uc001ild.3	+	10	1984	c.1885G>A	c.(1885-1887)GGG>AGG	p.G629R		NM_018706	NP_061176	Q96HY7	DHTK1_HUMAN	dehydrogenase E1 and transketolase domain	629					glycolysis	mitochondrion	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			ovary(1)|central_nervous_system(1)	2		Renal(717;0.228)	BRCA - Breast invasive adenocarcinoma(52;0.188)			AAATCAGAAGGGGTTTCTAGA	0.473													83	149					0	0	0.014410	0	0
CAMK1D	57118	broad.mit.edu	37	10	12708735	12708735	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:12708735G>A	uc001ilo.2	+	3	460	c.225G>A	c.(223-225)AAG>AAA	p.K75K	CAMK1D_uc001iln.2_Silent_p.K75K	NM_153498	NP_705718	Q8IU85	KCC1D_HUMAN	calcium/calmodulin-dependent protein kinase ID	75	Protein kinase.					calcium- and calmodulin-dependent protein kinase complex|cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|stomach(1)	2				GBM - Glioblastoma multiforme(1;3.16e-05)		TTTTTTTCAGGATTAAGCATG	0.343													159	211					0	0	0.014410	0	0
NEBL	10529	broad.mit.edu	37	10	21185889	21185889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:21185889C>T	uc001iqi.2	-	2	548	c.151G>A	c.(151-153)GAT>AAT	p.D51N	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Intron	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	51	Nebulin 1.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CCACTTACATCGCTAATGAGT	0.279													27	67					0	0	0.009535	0	0
GPR158	57512	broad.mit.edu	37	10	25887846	25887846	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:25887846G>A	uc001isj.2	+	11	3351	c.3291G>A	c.(3289-3291)GAG>GAA	p.E1097E	GPR158_uc001isk.2_Silent_p.E472E	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1097	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						TTCTCCCAGAGAGGGCAAAAG	0.512													45	55					0	0	0.011902	0	0
GPR158	57512	broad.mit.edu	37	10	25888089	25888089	+	Silent	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:25888089C>A	uc001isj.2	+	11	3594	c.3534C>A	c.(3532-3534)ACC>ACA	p.T1178T	GPR158_uc001isk.2_Silent_p.T553T	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	1178	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						AGTTTGAGACCCCAGCTCAAC	0.458													25	33					9.57634e-11	1.00877e-10	0.003330	1	0
APBB1IP	54518	broad.mit.edu	37	10	26825083	26825083	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:26825083G>A	uc001iss.2	+	10	1302	c.981G>A	c.(979-981)TGG>TGA	p.W327*	APBB1IP_uc009xks.1_Nonsense_Mutation_p.W327*	NM_019043	NP_061916	Q7Z5R6	AB1IP_HUMAN	amyloid beta (A4) precursor protein-binding,	327	PH.				blood coagulation|signal transduction	cytoskeleton|cytosol|focal adhesion|lamellipodium				lung(4)|skin(2)|central_nervous_system(1)	7						AGAAATCCTGGAAAAGGCGCT	0.363													53	86					0	0	0.014410	0	0
PARD3	56288	broad.mit.edu	37	10	34606232	34606232	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:34606232C>T	uc010qej.1	-	20	2877	c.2877G>A	c.(2875-2877)GGG>GGA	p.G959G	PARD3_uc010qek.1_Silent_p.G956G|PARD3_uc010qel.1_Silent_p.G959G|PARD3_uc010qem.1_Silent_p.G943G|PARD3_uc010qen.1_Silent_p.G913G|PARD3_uc010qeo.1_Silent_p.G913G|PARD3_uc010qep.1_Silent_p.G869G|PARD3_uc010qeq.1_Silent_p.G884G|PARD3_uc001ixo.1_Silent_p.G672G|PARD3_uc001ixp.1_Silent_p.G790G|PARD3_uc001ixq.1_Silent_p.G913G|PARD3_uc001ixr.1_Silent_p.G956G|PARD3_uc001ixt.1_Silent_p.G777G|PARD3_uc001ixu.1_Silent_p.G901G|PARD3_uc001ixs.1_Silent_p.G582G	NM_019619	NP_062565	Q8TEW0	PARD3_HUMAN	partitioning-defective protein 3 homolog	959					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|asymmetric cell division|axonogenesis|cell cycle|establishment of epithelial cell polarity|protein complex assembly|protein targeting to membrane|tight junction assembly	cell cortex|cytoskeleton|cytosol|endomembrane system|tight junction	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3-phosphate binding|phosphatidylinositol-4,5-bisphosphate binding|protein binding			ovary(1)	1		Breast(68;0.0707)				CAGACTCTCTCCCTGATCTTG	0.343													36	52					0	0	0.006999	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37431162	37431162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:37431162G>A	uc001iza.1	+	7	1268	c.1169G>A	c.(1168-1170)AGA>AAA	p.R390K		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	446						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GAAAAAGGAAGATCTAAGATG	0.383													17	20					0	0	0.006122	0	0
ZNF37B	100129482	broad.mit.edu	37	10	43015811	43015811	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:43015811G>A	uc001jab.3	-	5		c.3389C>T			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						TTCACTGAAGGATTTCTCCAT	0.403													9	10					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	10	43178809	43178809	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:43178809G>A	uc001jah.1	-	4		c.497C>T								Homo sapiens cDNA FLJ41072 fis, clone 3NB692005439.																		GTCTCACCATGGACTCGAGAG	0.428													3	1					0	0	0.009096	0	0
SYT15	83849	broad.mit.edu	37	10	46965118	46965118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:46965118G>A	uc001jea.2	-	6	980	c.827C>T	c.(826-828)CCC>CTC	p.P276L	SYT15_uc001jdz.2_Missense_Mutation_p.P276L|SYT15_uc001jeb.2_Missense_Mutation_p.P154L|SYT15_uc010qfp.1_RNA	NM_031912	NP_114118	Q9BQS2	SYT15_HUMAN	synaptotagmin XV isoform a	276	Cytoplasmic (Potential).					integral to membrane|plasma membrane					0						AAACTCCGAGGGGGGCTGGGG	0.642													14	105					0	0	0.004990	0	0
PPYR1	5540	broad.mit.edu	37	10	47087158	47087158	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:47087158G>A	uc001jee.2	+	3	794	c.375G>A	c.(373-375)GTG>GTA	p.V125V	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.V125V	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	125	Helical; Name=3; (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						GCATGTCGGTGACGGTCTCCA	0.592													40	272					0	0	0.013114	0	0
SGMS1	259230	broad.mit.edu	37	10	52071152	52071152	+	Silent	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:52071152T>C	uc001jje.2	-	9	1719	c.765A>G	c.(763-765)CAA>CAG	p.Q255Q	SGMS1_uc010qhk.1_Silent_p.Q86Q|SGMS1_uc009xot.1_RNA	NM_147156	NP_671512	Q86VZ5	SMS1_HUMAN	sphingomyelin synthase 1	261					apoptosis|cell growth|sphingomyelin biosynthetic process	endoplasmic reticulum|Golgi trans cisterna|integral to Golgi membrane|nucleus|plasma membrane	ceramide cholinephosphotransferase activity|kinase activity|sphingomyelin synthase activity			ovary(1)|kidney(1)	2						TTCTTCGCAGTTGGGCTTCCC	0.453													19	13					0	0	0.007413	0	0
PCDH15	65217	broad.mit.edu	37	10	55955622	55955622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:55955622G>A	uc001jju.1	-	11	1521	c.1126C>T	c.(1126-1128)CCT>TCT	p.P376S	PCDH15_uc010qhq.1_Missense_Mutation_p.P381S|PCDH15_uc010qhr.1_Missense_Mutation_p.P376S|PCDH15_uc010qhs.1_Missense_Mutation_p.P381S|PCDH15_uc010qht.1_Missense_Mutation_p.P376S|PCDH15_uc010qhu.1_Missense_Mutation_p.P376S|PCDH15_uc001jjv.1_Missense_Mutation_p.P354S|PCDH15_uc010qhv.1_Missense_Mutation_p.P376S|PCDH15_uc010qhw.1_Missense_Mutation_p.P339S|PCDH15_uc010qhx.1_Missense_Mutation_p.P376S|PCDH15_uc010qhy.1_Missense_Mutation_p.P381S|PCDH15_uc010qhz.1_Missense_Mutation_p.P376S|PCDH15_uc010qia.1_Missense_Mutation_p.P354S|PCDH15_uc010qib.1_Missense_Mutation_p.P354S|PCDH15_uc001jjw.2_Missense_Mutation_p.P376S	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	376	Cadherin 3.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GCAAAGGCAGGAAGAGGATGA	0.368										HNSCC(58;0.16)			21	38					0	0	0.014323	0	0
PHYHIPL	84457	broad.mit.edu	37	10	61004923	61004923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:61004923G>A	uc001jkk.3	+	5	969	c.703G>A	c.(703-705)GAA>AAA	p.E235K	PHYHIPL_uc001jkl.3_Missense_Mutation_p.E189K|PHYHIPL_uc001jkm.3_Missense_Mutation_p.E209K	NM_032439	NP_115815	Q96FC7	PHIPL_HUMAN	phytanoyl-CoA 2-hydroxylase interacting	235											0						CTGCAGCACTGAATTCAATAC	0.428													21	19					0	0	0.002780	0	0
ANK3	288	broad.mit.edu	37	10	61830575	61830575	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:61830575G>T	uc001jky.2	-	37	10256	c.10064C>A	c.(10063-10065)TCC>TAC	p.S3355Y	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3355					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TTTCTGGTTGGAAGCCTTTTC	0.383													42	55					2.24893e-16	2.38629e-16	0.009718	1	0
ANXA2P3	305	broad.mit.edu	37	10	66585377	66585377	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:66585377C>T	uc009xpm.1	+	1		c.93C>T				NR_001446				Human lipocortin (LIP) 2 pseudogene mRNA, complete cds-like region.												0						GGAGGGTCATCACTCTACACC	0.498													3	10					0	0	0.004672	0	0
PRF1	5551	broad.mit.edu	37	10	72358251	72358252	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:72358251_72358252GG>AA	uc009xqg.2	-	3	1386_1387	c.1225_1226CC>TT	c.(1225-1227)CCT>TTT	p.P409F	PRF1_uc001jrf.3_Missense_Mutation_p.P409F	NM_001083116	NP_001076585	P14222	PERF_HUMAN	perforin 1 precursor	409					apoptosis|cellular defense response|cytolysis|defense response to tumor cell|defense response to virus|immune response to tumor cell|protein homooligomerization	cytolytic granule|endosome lumen|extracellular region|integral to membrane|plasma membrane	calcium ion binding|protein binding|wide pore channel activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						CCTCTGCCGAGGGCAGCAGTCC	0.668			M			various leukaemia|lymphoma	Type 2 familial hemophagocytic lymphohistiocytosis		Familial_Hemophagocytic_Lymphohistiocytosis				14	19					0	0	0.004672	0	0
C10orf54	64115	broad.mit.edu	37	10	73511434	73511434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:73511434G>A	uc001jsd.2	-	6	1030	c.889C>T	c.(889-891)CCA>TCA	p.P297S	CDH23_uc001jrx.3_Intron|C10orf54_uc001jse.2_Missense_Mutation_p.P165S|C10orf54_uc009xqm.2_Missense_Mutation_p.P135S	NM_022153	NP_071436	Q9H7M9	GI24_HUMAN	platelet receptor Gi24 precursor	297	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)|central_nervous_system(1)	3						CCCAGGGATGGGAAGAAGACG	0.627													23	30					0	0	0.004656	0	0
OIT3	170392	broad.mit.edu	37	10	74658754	74658754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:74658754C>T	uc001jte.1	+	2	612	c.394C>T	c.(394-396)CGT>TGT	p.R132C	OIT3_uc009xqs.1_RNA	NM_152635	NP_689848	Q8WWZ8	OIT3_HUMAN	oncoprotein-induced transcript 3 precursor	132						nuclear envelope	calcium ion binding			ovary(2)	2	Prostate(51;0.0198)					CTATGTGTATCGTCTGACCAA	0.547													32	47					0	0	0.006999	0	0
VDAC2	7417	broad.mit.edu	37	10	76990717	76990717	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:76990717G>A	uc001jwz.2	+	10	1014	c.855G>A	c.(853-855)AAG>AAA	p.K285K	VDAC2_uc010qld.1_Silent_p.K246K|VDAC2_uc001jxa.2_Silent_p.K300K|VDAC2_uc010qle.1_Silent_p.K246K	NM_003375	NP_003366	P45880	VDAC2_HUMAN	voltage-dependent anion channel 2	285	Beta stranded; (By similarity).					mitochondrial nucleoid|mitochondrial outer membrane|pore complex	nucleotide binding|porin activity|protein binding|voltage-gated anion channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.0642)|all_epithelial(25;0.00604)|Prostate(51;0.0112)|Ovarian(15;0.183)				Dihydroxyaluminium(DB01375)	GAGGCCACAAGGTTGGGCTCG	0.428											OREG0020276	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	23					0	0	0.001855	0	0
RNLS	55328	broad.mit.edu	37	10	90034757	90034757	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:90034757C>T	uc001kfd.2	-	7	1044	c.909G>A	c.(907-909)GCG>GCA	p.A303A	RNLS_uc010qms.1_Silent_p.A220A	NM_018363	NP_060833	Q5VYX0	RNLS_HUMAN	renalase isoform 2	Error:Variant_position_missing_in_Q5VYX0_after_alignment						extracellular region	oxidoreductase activity			ovary(1)	1						AGGGGCTCTTCGCACATCCTA	0.428													17	31					0	0	0.010504	0	0
RBP4	5950	broad.mit.edu	37	10	95360699	95360699	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:95360699G>A	uc001kit.2	-	2	171	c.87C>T	c.(85-87)GTC>GTT	p.V29V		NM_006744	NP_006735	P02753	RET4_HUMAN	retinol-binding protein 4, plasma precursor	29					cardiac muscle tissue development|embryonic organ morphogenesis|embryonic retina morphogenesis in camera-type eye|embryonic skeletal system development|female genitalia morphogenesis|gluconeogenesis|glucose homeostasis|heart trabecula formation|lung development|maintenance of gastrointestinal epithelium|negative regulation of cardiac muscle cell proliferation|positive regulation of immunoglobulin secretion|positive regulation of insulin secretion|response to retinoic acid|retinol metabolic process|urinary bladder development|uterus development|vagina development	extracellular space	protein binding|retinal binding|retinol binding				0		Colorectal(252;0.122)			Vitamin A(DB00162)	AGTTCTCCTTGACTCGGAAGC	0.582													14	22					0	0	0.002450	0	0
CYP2C19	1557	broad.mit.edu	37	10	96540392	96540392	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:96540392G>A	uc010qnz.1	+	4	618	c.618G>A	c.(616-618)AGG>AGA	p.R206R	CYP2C19_uc009xus.1_Silent_p.R71R|CYP2C19_uc010qny.1_Silent_p.R184R	NM_000769	NP_000760	P33261	CP2CJ_HUMAN	cytochrome P450, family 2, subfamily C,	206					exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	(S)-limonene 6-monooxygenase activity|(S)-limonene 7-monooxygenase activity|4-hydroxyacetophenone monooxygenase activity|electron carrier activity|enzyme binding|heme binding|oxygen binding|steroid hydroxylase activity			ovary(4)|central_nervous_system(1)|skin(1)	6		Colorectal(252;0.09)		all cancers(201;6.02e-07)|KIRC - Kidney renal clear cell carcinoma(50;0.0672)|Kidney(138;0.0838)	Adinazolam(DB00546)|Aminophenazone(DB01424)|Amitriptyline(DB00321)|Amoxicillin(DB01060)|Arformoterol(DB01274)|Bortezomib(DB00188)|Carisoprodol(DB00395)|Chlorzoxazone(DB00356)|Cilostazol(DB01166)|Citalopram(DB00215)|Clarithromycin(DB01211)|Clobazam(DB00349)|Desipramine(DB01151)|Desloratadine(DB00967)|Diclofenac(DB00586)|Diltiazem(DB00343)|Efavirenz(DB00625)|Esomeprazole(DB00736)|Famotidine(DB00927)|Felbamate(DB00949)|Finasteride(DB01216)|Flunitrazepam(DB01544)|Fluvoxamine(DB00176)|Formoterol(DB00983)|Fosphenytoin(DB01320)|Guanfacine(DB01018)|Imipramine(DB00458)|Indomethacin(DB00328)|Ketoconazole(DB01026)|Lansoprazole(DB00448)|Lapatinib(DB01259)|Loratadine(DB00455)|Melatonin(DB01065)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Moclobemide(DB01171)|Modafinil(DB00745)|Nelfinavir(DB00220)|Nicardipine(DB00622)|Nilutamide(DB00665)|Norgestrel(DB00506)|Omeprazole(DB00338)|Oxcarbazepine(DB00776)|Pantoprazole(DB00213)|Pentamidine(DB00738)|Phenobarbital(DB01174)|Phenytoin(DB00252)|Primidone(DB00794)|Progesterone(DB00396)|Proguanil(DB01131)|Promazine(DB00420)|Quinidine(DB00908)|Rabeprazole(DB01129)|Ranitidine(DB00863)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Temazepam(DB00231)|Teniposide(DB00444)|Terfenadine(DB00342)|Thalidomide(DB01041)|Thioridazine(DB00679)|Ticlopidine(DB00208)|Tolbutamide(DB01124)|Topiramate(DB00273)|Tranylcypromine(DB00752)|Troglitazone(DB00197)|Troleandomycin(DB01361)|Voriconazole(DB00582)	AAAACATCAGGATTGTAAGCA	0.373													28	50					0	0	0.008361	0	0
SLIT1	6585	broad.mit.edu	37	10	98923177	98923177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:98923177C>T	uc001kmw.2	-	3	553	c.301G>A	c.(301-303)GAA>AAA	p.E101K	SLIT1_uc009xvh.1_Missense_Mutation_p.E101K|ARHGAP19_uc001kmy.2_RNA|SLIT1_uc001kmz.2_Missense_Mutation_p.E101K	NM_003061	NP_003052	O75093	SLIT1_HUMAN	slit homolog 1 precursor	101	LRR 2.				axon extension involved in axon guidance|forebrain morphogenesis|motor axon guidance|negative chemotaxis|negative regulation of synaptogenesis	cytoplasm|extracellular space	calcium ion binding|Roundabout binding			ovary(4)	4		Colorectal(252;0.162)		Epithelial(162;2.02e-08)|all cancers(201;1.5e-06)		GCACCACGTTCCACTGCTCCA	0.597													158	182					0	0	0.014410	0	0
C10orf62	414157	broad.mit.edu	37	10	99349867	99349867	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:99349867C>T	uc001koa.2	+	1	384	c.213C>T	c.(211-213)TCC>TCT	p.S71S	DHDPSL_uc001knx.2_Intron|DHDPSL_uc001kny.2_Intron|DHDPSL_uc001knz.2_Intron|PI4K2A_uc010qoy.1_Intron	NM_001009997	NP_001009997	Q5T681	CJ062_HUMAN	hypothetical protein LOC414157	71							protein binding				0		Colorectal(252;0.162)		Epithelial(162;9.58e-11)|all cancers(201;8.62e-09)		AGGTCAGCTCCACGGTTCACA	0.582													27	30					0	0	0.003954	0	0
CRTAC1	55118	broad.mit.edu	37	10	99661391	99661391	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:99661391G>A	uc001kou.1	-	8	1358	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	CRTAC1_uc001kov.2_Silent_p.I323I|CRTAC1_uc001kot.1_Silent_p.I124I	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	334						proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		TGGGTGAGGCGATGTCCTGGA	0.572													21	16					0	0	0.014323	0	0
LOXL4	84171	broad.mit.edu	37	10	100016611	100016611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:100016611C>T	uc001kpa.1	-	9	1505	c.1354G>A	c.(1354-1356)GAA>AAA	p.E452K		NM_032211	NP_115587	Q96JB6	LOXL4_HUMAN	lysyl oxidase-like 4 precursor	452	SRCR 4.					extracellular space|membrane	copper ion binding|protein binding|scavenger receptor activity			ovary(3)|breast(1)|skin(1)	5		Colorectal(252;0.234)		Epithelial(162;2.14e-11)|all cancers(201;2.49e-09)		CCCCAGTTTTCACTGCACACG	0.617													33	35					0	0	0.003271	0	0
CWF19L1	55280	broad.mit.edu	37	10	102013297	102013297	+	Splice_Site	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:102013297C>T	uc001kqq.1	-	6	592	c.505_splice	c.e6-1	p.G169_splice	CWF19L1_uc001kqs.1_Splice_Site|CWF19L1_uc001kqr.1_Splice_Site_p.G169_splice|CWF19L1_uc001kqt.1_Splice_Site|CWF19L1_uc010qpn.1_Splice_Site_p.G32_splice	NM_018294	NP_060764	Q69YN2	C19L1_HUMAN	CWF19-like 1, cell cycle control								catalytic activity				0		Colorectal(252;0.117)		Epithelial(162;3.78e-10)|all cancers(201;3.1e-08)		CCACTTCTCCCTAGTAAACAA	0.338													31	38					0	0	0.010818	0	0
POLL	27343	broad.mit.edu	37	10	103345652	103345652	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:103345652T>A	uc001ktg.1	-	2	1143	c.377A>T	c.(376-378)GAT>GTT	p.D126V	DPCD_uc010qpz.1_Intron|POLL_uc001ktd.1_5'Flank|POLL_uc001kte.1_5'Flank|POLL_uc001kth.1_Intron|POLL_uc001kti.1_Missense_Mutation_p.D126V|POLL_uc001ktj.1_Missense_Mutation_p.D126V|POLL_uc001ktf.2_Missense_Mutation_p.D126V|POLL_uc001ktk.1_Intron|POLL_uc010qqa.1_Intron|POLL_uc010qqb.1_Intron|POLL_uc001ktm.2_Missense_Mutation_p.D126V|POLL_uc001ktl.2_Missense_Mutation_p.D38V|POLL_uc010qqc.1_5'UTR|POLL_uc010qqd.1_Missense_Mutation_p.D38V|DPCD_uc001ktn.2_5'Flank	NM_013274	NP_037406	Q9UGP5	DPOLL_HUMAN	DNA-directed DNA polymerase lambda	126	BRCT.				DNA replication|nucleotide-excision repair|somatic hypermutation of immunoglobulin genes	nucleus	DNA binding|DNA-directed DNA polymerase activity|lyase activity|metal ion binding				0		Colorectal(252;0.234)		Epithelial(162;1.55e-08)|all cancers(201;6.64e-07)		TCCAGCTACATCCACCAGCCT	0.527								DNA_polymerases_(catalytic_subunits)					21	22					0	0	0.002780	0	0
C10orf79	80217	broad.mit.edu	37	10	105903397	105903397	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:105903397C>T	uc001kxw.2	-	32	4061	c.3945G>A	c.(3943-3945)AGG>AGA	p.R1315R	C10orf79_uc009xxq.2_Silent_p.R594R	NM_025145	NP_079421	Q8NDM7	WDR96_HUMAN	hypothetical protein LOC80217	1315											0		Colorectal(252;0.178)		Epithelial(162;4.83e-10)|all cancers(201;2.26e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0194)		GTTTGGAAATCCTGGTATTAC	0.418													17	18					0	0	0.004007	0	0
ADD3	120	broad.mit.edu	37	10	111890164	111890164	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:111890164C>T	uc001kyt.3	+	14	1966	c.1652C>T	c.(1651-1653)CCT>CTT	p.P551L	ADD3_uc001kys.3_Missense_Mutation_p.P551L|ADD3_uc001kyu.2_Missense_Mutation_p.P551L|ADD3_uc001kyv.2_Missense_Mutation_p.P551L|ADD3_uc001kyw.2_Missense_Mutation_p.P551L|ADD3_uc001kyx.2_Missense_Mutation_p.P124L	NM_016824	NP_058432	Q9UEY8	ADDG_HUMAN	adducin 3 (gamma) isoform a	551						cytoskeleton	actin binding|calmodulin binding|metal ion binding|structural constituent of cytoskeleton			ovary(2)|skin(2)|large_intestine(1)	5		Breast(234;0.052)|Lung NSC(174;0.223)		Epithelial(162;4.15e-05)|all cancers(201;0.000587)|BRCA - Breast invasive adenocarcinoma(275;0.0742)		CCAGCTCCTCCTAACCCATTT	0.348													27	48					0	0	0.008361	0	0
HABP2	3026	broad.mit.edu	37	10	115343036	115343036	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:115343036C>T	uc001lai.3	+	10	1259	c.1156C>T	c.(1156-1158)CAT>TAT	p.H386Y	HABP2_uc010qrz.1_RNA	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	386	Peptidase S1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		AGAAGAATTTCATGAGCAGAG	0.408													34	36					0	0	0.004289	0	0
ATRNL1	26033	broad.mit.edu	37	10	116887370	116887370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:116887370C>T	uc001lcg.2	+	4	891	c.505C>T	c.(505-507)CCT>TCT	p.P169S	ATRNL1_uc001lce.2_RNA|ATRNL1_uc001lcf.2_Missense_Mutation_p.P169S|ATRNL1_uc009xyq.2_Missense_Mutation_p.P169S	NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	169	CUB.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		TTTGATAGTCCCTGAAATAAG	0.328													12	13					0	0	0.013537	0	0
ATRNL1	26033	broad.mit.edu	37	10	116975623	116975623	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:116975623T>G	uc001lcg.2	+	9	1903	c.1517T>G	c.(1516-1518)GTT>GGT	p.V506G		NM_207303	NP_997186	Q5VV63	ATRN1_HUMAN	attractin-like 1 precursor	506	Kelch 4.|Extracellular (Potential).					integral to membrane	sugar binding			ovary(5)|lung(1)|central_nervous_system(1)	7		all_lung(145;0.0686)|Breast(234;0.0969)|Lung NSC(174;0.17)|Colorectal(252;0.234)		Epithelial(162;0.00031)|all cancers(201;0.000753)|LUSC - Lung squamous cell carcinoma(1;0.0515)|Lung(30;0.0827)		AAATATGAAGTTAACACTAAG	0.303													13	15					0	0	0.002450	0	0
PNLIPRP1	5407	broad.mit.edu	37	10	118368581	118368581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:118368581G>A	uc001lco.1	+	13	1375	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K	PNLIPRP1_uc001lcp.2_Missense_Mutation_p.E453K	NM_006229	NP_006220	P54315	LIPR1_HUMAN	pancreatic lipase-related protein 1 precursor	453	PLAT.				lipid metabolic process		calcium ion binding|triglyceride lipase activity			ovary(1)|breast(1)	2				all cancers(201;0.0161)		CTTCTGTAGCGAAGACACAGT	0.468													24	42					0	0	0.004656	0	0
TACC2	10579	broad.mit.edu	37	10	123848060	123848060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:123848060G>A	uc001lfv.2	+	5	5887	c.5527G>A	c.(5527-5529)GAT>AAT	p.D1843N	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.D1843N|TACC2_uc010qtv.1_Missense_Mutation_p.D1843N	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1843						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				AAGAGTCATGGATAAAGTCAC	0.458													15	26					0	0	0.004990	0	0
DMBT1	1755	broad.mit.edu	37	10	124402799	124402799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:124402799G>A	uc001lgk.1	+	53	7233	c.7127G>A	c.(7126-7128)CGA>CAA	p.R2376Q	DMBT1_uc001lgl.1_Missense_Mutation_p.R2366Q|DMBT1_uc001lgm.1_Missense_Mutation_p.R1748Q|DMBT1_uc009xzz.1_Missense_Mutation_p.R2375Q|DMBT1_uc010qtx.1_Missense_Mutation_p.R1096Q|DMBT1_uc009yab.1_Missense_Mutation_p.R1079Q|DMBT1_uc009yac.1_Missense_Mutation_p.R670Q	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	2376	ZP.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				CGCTGCTACCGAGGCTGTGTG	0.607													42	50					0	0	0.008740	0	0
CPXM2	119587	broad.mit.edu	37	10	125514272	125514272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:125514272G>A	uc001lhk.1	-	13	2249	c.1924C>T	c.(1924-1926)CGT>TGT	p.R642C	CPXM2_uc001lhj.2_RNA	NM_198148	NP_937791	Q8N436	CPXM2_HUMAN	carboxypeptidase X (M14 family), member 2	642					cell adhesion|proteolysis	extracellular space	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2		all_lung(145;0.174)|Colorectal(57;0.178)|Glioma(114;0.222)|all_neural(114;0.226)|Lung NSC(174;0.233)		COAD - Colon adenocarcinoma(40;0.212)|Colorectal(40;0.237)		TTAATGCCACGATGAACCTGC	0.517													47	58					0	0	0.013114	0	0
FANK1	92565	broad.mit.edu	37	10	127677178	127677178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:127677178C>T	uc001ljh.3	+	3	354	c.250C>T	c.(250-252)CGC>TGC	p.R84C	FANK1_uc010quk.1_Missense_Mutation_p.R78C|FANK1_uc009yan.2_Missense_Mutation_p.R84C|FANK1_uc001lji.2_Missense_Mutation_p.R78C	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	84	Fibronectin type-III.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				GTACAGATTTCGCCTGAAGGT	0.522													68	99					0	0	0.014410	0	0
INPP5A	3632	broad.mit.edu	37	10	134563050	134563050	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:134563050G>A	uc001llp.2	+	10	1010	c.762G>A	c.(760-762)ACG>ACA	p.T254T	INPP5A_uc001llo.1_Silent_p.T254T|INPP5A_uc001llq.2_Intron	NM_005539	NP_005530	Q14642	I5P1_HUMAN	inositol polyphosphate-5-phosphatase A	254					cell communication	membrane	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|PH domain binding			skin(1)	1		all_cancers(35;8.59e-13)|all_epithelial(44;5.49e-09)|Lung NSC(174;0.000854)|all_lung(145;0.00146)|all_neural(114;0.0299)|Colorectal(31;0.0599)|Breast(234;0.0849)|Melanoma(40;0.124)|all_hematologic(284;0.196)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;0.000102)|Epithelial(32;0.00023)|all cancers(32;0.000326)		CCATGCAGACGGTCCGGGCCG	0.622													18	36					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	10	134624457	134624457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr10:134624457C>T	uc010qux.1	-	48	6758	c.6758G>A	c.(6757-6759)AGG>AAG	p.R2253K		NM_017609	NP_060079			Homo sapiens cDNA, FLJ17989.																		CAGGCACCTCCTGTGCTCCAC	0.672													4	6					0	0	0.009096	0	0
ANO9	338440	broad.mit.edu	37	11	430322	430322	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:430322C>T	uc001lpi.2	-	8	706	c.621G>A	c.(619-621)ACG>ACA	p.T207T	ANO9_uc001lph.2_5'Flank|ANO9_uc010qvv.1_Silent_p.T63T	NM_001012302	NP_001012302	A1A5B4	ANO9_HUMAN	tumor protein p53 inducible protein 5	207	Helical; (Potential).					chloride channel complex	chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4						CTAAGAGGCCCGTCAGGGCGG	0.657													14	5					0	0	0.001855	0	0
LRRC56	115399	broad.mit.edu	37	11	551784	551784	+	Silent	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:551784T>A	uc010qvz.1	+	10	1435	c.930T>A	c.(928-930)TCT>TCA	p.S310S		NM_198075	NP_932341	Q8IYG6	LRC56_HUMAN	leucine rich repeat containing 56	310										skin(1)	1		all_cancers(49;2.16e-06)|all_epithelial(84;0.000256)|Breast(177;0.00122)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;7.63e-28)|Epithelial(43;7.29e-27)|OV - Ovarian serous cystadenocarcinoma(40;7.15e-21)|BRCA - Breast invasive adenocarcinoma(625;3.56e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GCCTGCTTTCTGAGGACCTGG	0.672													14	15					0	0	0.003163	0	0
KRTAP5-4	387267	broad.mit.edu	37	11	1642985	1642985	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:1642985G>A	uc009ycy.1	-	3	564	c.477C>T	c.(475-477)TCC>TCT	p.S159S		NM_001012709	NP_001012727	Q6L8H1	KRA54_HUMAN	keratin associated protein 5-4	173	9 X 4 AA repeats of C-C-X-P.					keratin filament					0		all_epithelial(84;0.00819)|Breast(177;0.00832)|Ovarian(85;0.0256)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		BRCA - Breast invasive adenocarcinoma(625;0.000614)|Lung(200;0.0681)|LUSC - Lung squamous cell carcinoma(625;0.082)		AACCCCCACAGGAGCCACAGC	0.667													35	65					0	0	0.004878	0	0
INS-IGF2	723961	broad.mit.edu	37	11	2170541	2170541	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:2170541G>A	uc001lvm.2	-	3	281	c.222C>T	c.(220-222)ACC>ACT	p.T74T	IGF2_uc001lvh.2_5'UTR|INS-IGF2_uc001lvi.2_RNA	NM_001042376	NP_001035835	Q1WM24	Q1WM24_HUMAN	insulin- insulin-like growth factor 2	74					glucose metabolic process	extracellular region	hormone activity				0		all_epithelial(84;0.00018)|Breast(177;0.000962)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)|all_lung(207;0.24)	Colorectal(5;0.00245)|COAD - Colon adenocarcinoma(6;0.0239)	BRCA - Breast invasive adenocarcinoma(625;0.00256)|LUSC - Lung squamous cell carcinoma(625;0.0832)|Lung(200;0.156)		CCTCTGGCCAGGTTGACGTGG	0.592													38	54					0	0	0.014410	0	0
TRPM5	29850	broad.mit.edu	37	11	2439583	2439583	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:2439583G>A	uc001lwm.3	-	6	729	c.720C>T	c.(718-720)ATC>ATT	p.I240I	TRPM5_uc010qxl.1_Silent_p.I240I|TRPM5_uc009ydn.2_Silent_p.I242I	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	240	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CGGCCCTGGAGATCCTCTGAG	0.672													100	121					0	0	0.014410	0	0
LOC650368	650368	broad.mit.edu	37	11	3427845	3427845	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:3427845C>T	uc010qxs.1	+	9		c.838C>T			LOC650368_uc001lxx.2_RNA|LOC650368_uc001lxy.2_RNA	NR_024248				Homo sapiens cDNA FLJ41654 fis, clone FEBRA2025463, weakly  similar to Homo sapiens HMT-1 mRNA for beta-1,4 mannosyltransferase.												0						CTTCAAGTGGCAGGAGCAGAA	0.587													5	31					0	0	0.000602	0	0
NUP98	4928	broad.mit.edu	37	11	3803334	3803334	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:3803334G>A	uc001lyh.2	-	2	305	c.14C>T	c.(13-15)TCA>TTA	p.S5L	NUP98_uc001lyi.2_Missense_Mutation_p.S5L|NUP98_uc001lyj.1_Missense_Mutation_p.S5L|NUP98_uc001lyk.1_Missense_Mutation_p.S5L|NUP98_uc010qxv.1_Missense_Mutation_p.S5L	NM_016320	NP_057404	P52948	NUP98_HUMAN	nucleoporin 98kD isoform 1	5					carbohydrate metabolic process|DNA replication|glucose transport|interspecies interaction between organisms|mitotic prometaphase|mRNA transport|nuclear pore organization|protein import into nucleus, docking|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nucleoplasm|Nup107-160 complex	protein binding|structural constituent of nuclear pore|transporter activity			breast(4)|skin(3)|ovary(2)|central_nervous_system(1)|lung(1)|kidney(1)	12		Medulloblastoma(188;0.0025)|Breast(177;0.00328)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0403)|LUSC - Lung squamous cell carcinoma(625;0.116)|Lung(200;0.199)		TGTTCCAAATGATTTGTTAAA	0.358			T	HOXA9|NSD1|WHSC1L1|DDX10|TOP1|HOXD13|PMX1|HOXA13|HOXD11|HOXA11|RAP1GDS1|HOXC11	AML								14	21					0	0	0.002450	0	0
OR52B4	143496	broad.mit.edu	37	11	4389277	4389277	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:4389277G>A	uc010qye.1	-	1	249	c.249C>T	c.(247-249)GCC>GCT	p.A83A		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	83	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		AGATAGCTAAGGCCTGAGGAA	0.527													13	19					0	0	0.001855	0	0
OR51T1	401665	broad.mit.edu	37	11	4903218	4903218	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:4903218C>T	uc010qyp.1	+	1	170	c.170C>T	c.(169-171)TCC>TTC	p.S57F		NM_001004759	NP_001004759	Q8NGJ9	O51T1_HUMAN	olfactory receptor, family 51, subfamily T,	30	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTCTGGATCTCCATTCCAGTC	0.453													44	65					0	0	0.014410	0	0
OR51G1	79324	broad.mit.edu	37	11	4944768	4944768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:4944768C>T	uc010qyr.1	-	1	802	c.802G>A	c.(802-804)GAA>AAA	p.E268K		NM_001005237	NP_001005237	Q8NGK1	O51G1_HUMAN	olfactory receptor, family 51, subfamily G,	268	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.58e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCAGATGTTCACCAAAGCGA	0.502													42	54					0	0	0.008740	0	0
MMP26	56547	broad.mit.edu	37	11	5012670	5012670	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:5012670G>A	uc001lzv.2	+	4	557	c.539G>A	c.(538-540)GGA>GAA	p.G180E		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	180					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCAAATTCTGGAAATCCTGGA	0.473													61	105					0	0	0.014410	0	0
OR51L1	119682	broad.mit.edu	37	11	5020353	5020353	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:5020353C>T	uc010qyu.1	+	1	141	c.141C>T	c.(139-141)ATC>ATT	p.I47I		NM_001004755	NP_001004755	Q8NGJ5	O51L1_HUMAN	olfactory receptor, family 51, subfamily L,	47	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0061)|all_neural(188;0.0479)|Breast(177;0.086)		Epithelial(150;1.75e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGTTACCATCCTGTCTGTCA	0.433													57	61					0	0	0.014410	0	0
OR52J3	119679	broad.mit.edu	37	11	5068546	5068546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:5068546G>A	uc010qyv.1	+	1	791	c.791G>A	c.(790-792)CGA>CAA	p.R264Q		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		CTTACTCATCGATTTGGACAC	0.443													38	56					0	0	0.007835	0	0
OR51I1	390063	broad.mit.edu	37	11	5461959	5461959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:5461959C>T	uc010qze.1	-	1	786	c.786G>A	c.(784-786)ATG>ATA	p.M262I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	262	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCGGTGAATCATGGAGACAG	0.483													28	41					0	0	0.007291	0	0
OR51I1	390063	broad.mit.edu	37	11	5462139	5462139	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:5462139G>A	uc010qze.1	-	1	606	c.606C>T	c.(604-606)CTC>CTT	p.L202L	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGATCACCAAGAGCCCATAAA	0.443													18	18					0	0	0.004990	0	0
TRIM6-TRIM34	445372	broad.mit.edu	37	11	5625835	5625835	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:5625835C>T	uc001mbf.2	+	3	823	c.579C>T	c.(577-579)ATC>ATT	p.I193I	HBG2_uc001mak.1_Intron|TRIM6_uc009yeo.1_Silent_p.I139I|TRIM6_uc010qzj.1_5'UTR|TRIM6_uc001mbc.1_Silent_p.I165I|TRIM6_uc001mbe.2_5'UTR|TRIM6_uc010qzk.1_5'UTR|TRIM6_uc010qzl.1_Intron|TRIM6_uc001mbd.2_Silent_p.I193I|TRIM6_uc001mbg.1_5'Flank|TRIM6_uc009yep.1_5'Flank	NM_001003819	NP_001003819	B2RNG4	B2RNG4_HUMAN	tripartite motif-containing 6 and tripartite	193						intracellular	zinc ion binding			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;1.01e-08)|BRCA - Breast invasive adenocarcinoma(625;0.145)		CAGCTTTTATCAGAGAGAAGA	0.473													36	49					0	0	0.003271	0	0
OR52E6	390078	broad.mit.edu	37	11	5862787	5862787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:5862787C>T	uc010qzq.1	-	1	341	c.341G>A	c.(340-342)AGC>AAC	p.S114N	TRIM5_uc001mbq.1_Intron	NM_001005167	NP_001005167	Q96RD3	O52E6_HUMAN	olfactory receptor, family 52, subfamily E,	114	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;2.55e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CAATACGATGCTCTCCATGAC	0.448													54	96					0	0	0.014410	0	0
CNGA4	1262	broad.mit.edu	37	11	6261336	6261336	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:6261336G>C	uc001mco.2	+	4	419	c.312G>C	c.(310-312)AGG>AGC	p.R104S	CNGA4_uc010raa.1_Intron|CNGA4_uc001mcn.2_Missense_Mutation_p.R64S	NM_001037329	NP_001032406	Q8IV77	CNGA4_HUMAN	cyclic nucleotide gated channel alpha 4	104	Cytoplasmic (Potential).				response to stimulus|sensory perception of smell		cAMP binding			skin(1)	1		Medulloblastoma(188;0.00263)|all_neural(188;0.026)|Breast(177;0.029)		Epithelial(150;2.04e-08)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACAAGGGTAGGATCTCGAGTC	0.597													45	62					0	0	0.009718	0	0
DCHS1	8642	broad.mit.edu	37	11	6662256	6662256	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:6662256G>A	uc001mem.1	-	2	999	c.589C>T	c.(589-591)CCC>TCC	p.P197S		NM_003737	NP_003728	Q96JQ0	PCD16_HUMAN	dachsous 1 precursor	197	Cadherin 2.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|large_intestine(1)|pancreas(1)	5		Medulloblastoma(188;0.00263)|all_neural(188;0.026)		Epithelial(150;6.35e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTGGACCGGGGCGTGTCTCC	0.597													31	34					0	0	0.003271	0	0
OR10A2	341276	broad.mit.edu	37	11	6891351	6891351	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:6891351C>T	uc001meu.1	+	1	366	c.366C>T	c.(364-366)ATC>ATT	p.I122I		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ACCCAGTCATCATGAACCAAA	0.512													81	79					0	0	0.014410	0	0
OR10A2	341276	broad.mit.edu	37	11	6891566	6891566	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:6891566T>G	uc001meu.1	+	1	581	c.581T>G	c.(580-582)GTC>GGC	p.V194G		NM_001004460	NP_001004460	Q9H208	O10A2_HUMAN	olfactory receptor, family 10, subfamily A,	194	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.89e-08)|BRCA - Breast invasive adenocarcinoma(625;0.13)		ATTCTGGTGGTCATGATCCCC	0.498													72	70					0	0	0.014410	0	0
RBMXL2	27288	broad.mit.edu	37	11	7111098	7111098	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:7111098G>A	uc001mfc.2	+	1	934	c.747G>A	c.(745-747)CGG>CGA	p.R249R		NM_014469	NP_055284	O75526	HNRGT_HUMAN	testes-specific heterogenous nuclear	249	Arg/Gly/Pro-rich.					nucleus|ribonucleoprotein complex	nucleotide binding|RNA binding				0				Epithelial(150;5.14e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CCAGTGTCCGGGACGACTGTC	0.652													12	32					0	0	0.001855	0	0
OR10A6	390093	broad.mit.edu	37	11	7950066	7950066	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:7950066G>A	uc010rbh.1	-	1	144	c.144C>T	c.(142-144)ATC>ATT	p.I48I		NM_001004461	NP_001004461	Q8NH74	O10A6_HUMAN	olfactory receptor, family 10, subfamily A,	48	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2				Epithelial(150;1.38e-07)|BRCA - Breast invasive adenocarcinoma(625;0.189)		CTAGGGAGACGATGACTATAA	0.468													43	45					0	0	0.009718	0	0
STK33	65975	broad.mit.edu	37	11	8486289	8486289	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:8486289C>T	uc001mgi.1	-	3	1339	c.420G>A	c.(418-420)ACG>ACA	p.T140T	STK33_uc001mgj.1_Silent_p.T140T|STK33_uc001mgk.1_Silent_p.T140T|STK33_uc010rbn.1_Silent_p.T99T|STK33_uc001mgl.3_5'UTR|STK33_uc009yfp.2_Intron	NM_030906	NP_112168	Q9BYT3	STK33_HUMAN	serine/threonine kinase 33	140	Protein kinase.					Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein serine/threonine kinase activity	p.T140M(1)		ovary(2)|lung(2)|pancreas(1)|central_nervous_system(1)|skin(1)	7				Epithelial(150;2.13e-06)|BRCA - Breast invasive adenocarcinoma(625;0.239)		TTGCCCACTTCGTTTCTGTTT	0.413													32	40					0	0	0.003271	0	0
DKK3	27122	broad.mit.edu	37	11	11987501	11987501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:11987501G>A	uc001mju.2	-	6	742	c.685C>T	c.(685-687)CCT>TCT	p.P229S	DKK3_uc010rcf.1_Missense_Mutation_p.P201S|DKK3_uc001mjv.2_Missense_Mutation_p.P229S|DKK3_uc001mjw.2_Missense_Mutation_p.P229S|DKK3_uc010rcg.1_Missense_Mutation_p.P229S	NM_001018057	NP_001018067	Q9UBP4	DKK3_HUMAN	dickkopf homolog 3 precursor	229	DKK-type Cys-2.				adrenal gland development|anatomical structure morphogenesis|negative regulation of aldosterone biosynthetic process|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cortisol biosynthetic process|negative regulation of transcription, DNA-dependent|Wnt receptor signaling pathway	extracellular space				breast(1)	1				Epithelial(150;0.000502)		GTGCACACAGGGAACAGCAGG	0.627													14	17					0	0	0.001855	0	0
ABCC8	6833	broad.mit.edu	37	11	17482077	17482077	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:17482077G>A	uc001mnc.2	-	6	1095	c.969C>T	c.(967-969)ATC>ATT	p.I323I	ABCC8_uc010rcy.1_Silent_p.I322I	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	323	Helical; Name=6; (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	GGTGGTCCACGATCCCAAAGA	0.602													138	200					0	0	0.014410	0	0
KCNC1	3746	broad.mit.edu	37	11	17793727	17793727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:17793727G>A	uc001mnk.3	+	2	1141	c.1086G>A	c.(1084-1086)ATG>ATA	p.M362I	KCNC1_uc009yhc.1_Missense_Mutation_p.M362I	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	362	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						TCGCCACCATGATCTACTACG	0.622													23	25					0	0	0.012319	0	0
MRGPRX4	117196	broad.mit.edu	37	11	18195625	18195625	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:18195625C>T	uc001mnv.1	+	1	1242	c.822C>T	c.(820-822)TTC>TTT	p.F274F		NM_054032	NP_473373	Q96LA9	MRGX4_HUMAN	MAS-related GPR, member X4	274	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						TTTACTTCTTCGTGGGCTCCT	0.488													44	54					0	0	0.014410	0	0
ZDHHC13	54503	broad.mit.edu	37	11	19197388	19197388	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:19197388C>T	uc001mpi.2	+	17	1855	c.1750C>T	c.(1750-1752)CTG>TTG	p.L584L	ZDHHC13_uc001mpj.2_Silent_p.L454L	NM_019028	NP_061901	Q8IUH4	ZDH13_HUMAN	zinc finger, DHHC domain containing 13 isoform	584					positive regulation of I-kappaB kinase/NF-kappaB cascade	Golgi-associated vesicle membrane|integral to membrane	magnesium ion transmembrane transporter activity|palmitoyltransferase activity|signal transducer activity|zinc ion binding				0						CATGCAGAACCTGGCAGATTT	0.418													32	46					0	0	0.010818	0	0
ANO5	203859	broad.mit.edu	37	11	22257768	22257768	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:22257768G>A	uc001mqi.2	+	8	1025	c.708G>A	c.(706-708)GGG>GGA	p.G236G	ANO5_uc001mqj.2_Silent_p.G235G	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	236	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						AAAGGTTTGGGATTGAAAGAC	0.388													18	24					0	0	0.003954	0	0
ANO5	203859	broad.mit.edu	37	11	22301197	22301197	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:22301197C>T	uc001mqi.2	+	22	2945	c.2628C>T	c.(2626-2628)CTC>CTT	p.L876L	ANO5_uc001mqj.2_Silent_p.L875L	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	876	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TCAAGATTCTCCATGATTTTG	0.348													13	28					0	0	0.004007	0	0
CCDC73	493860	broad.mit.edu	37	11	32663598	32663598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:32663598C>T	uc001mtv.2	-	13	1014	c.970G>A	c.(970-972)GAG>AAG	p.E324K	CCDC73_uc001mtw.1_Missense_Mutation_p.E314K	NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	324	Potential.									ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					TTTACCTTCTCCCTTTGCAGC	0.284													7	8					0	0	0.001984	0	0
PDHX	8050	broad.mit.edu	37	11	35016516	35016516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:35016516C>T	uc001mvt.2	+	11	1829	c.1303C>T	c.(1303-1305)CCT>TCT	p.P435S	PDHX_uc010rep.1_Missense_Mutation_p.P420S|PDHX_uc010req.1_Missense_Mutation_p.P208S	NM_003477	NP_003468	O00330	ODPX_HUMAN	pyruvate dehydrogenase complex, component X	435					pyruvate metabolic process|regulation of acetyl-CoA biosynthetic process from pyruvate	mitochondrial matrix	acyltransferase activity			kidney(1)	1	all_epithelial(35;0.115)|Lung NSC(22;0.218)|all_lung(20;0.242)	all_hematologic(20;0.124)	STAD - Stomach adenocarcinoma(6;0.00113)			GATTAACCCTCCTCAGGCCTG	0.498													58	78					0	0	0.014410	0	0
LRRC4C	57689	broad.mit.edu	37	11	40137212	40137212	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:40137212C>T	uc001mxa.1	-	2	2595	c.631G>A	c.(631-633)GAA>AAA	p.E211K	LRRC4C_uc001mxc.1_Missense_Mutation_p.E207K|LRRC4C_uc001mxd.1_Missense_Mutation_p.E207K|LRRC4C_uc001mxb.1_Missense_Mutation_p.E207K	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	211	LRR 6.				regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TTAGGGATTTCCCGAAGGTTG	0.453													31	42					0	0	0.010818	0	0
KIAA0652	9776	broad.mit.edu	37	11	46667426	46667426	+	Silent	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:46667426T>C	uc009yld.2	+	5	841	c.157T>C	c.(157-159)TTA>CTA	p.L53L	KIAA0652_uc001nda.2_Silent_p.L53L|KIAA0652_uc001ndb.2_Silent_p.L53L|KIAA0652_uc001ncz.2_Silent_p.L53L|KIAA0652_uc001ndc.2_Silent_p.L53L|KIAA0652_uc010rgv.1_5'UTR	NM_001142673	NP_001136145	O75143	ATG13_HUMAN	autophagy-related protein 13 isoform 1	53					autophagic vacuole assembly	cytosol|pre-autophagosomal structure|ULK1-ATG13-FIP200 complex	protein binding				0				GBM - Glioblastoma multiforme(35;0.226)		CCAGTTCAACTTAGCAATCAA	0.443													22	19					0	0	0.012319	0	0
PSMC3	5702	broad.mit.edu	37	11	47446711	47446711	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:47446711C>T	uc001nfh.2	-	3	440	c.246G>A	c.(244-246)GTG>GTA	p.V82V	PSMC3_uc009ylr.1_Intron	NM_002804	NP_002795	P17980	PRS6A_HUMAN	proteasome 26S ATPase subunit 3	82					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|nucleoside-triphosphatase activity|protein binding|transcription coactivator activity|transcription corepressor activity			ovary(4)	4				Lung(87;0.0932)|BRCA - Breast invasive adenocarcinoma(625;0.13)		GGGTCTTGTTCACTTTGATTT	0.507													33	47					0	0	0.003755	0	0
OR4X1	390113	broad.mit.edu	37	11	48286276	48286276	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:48286276G>A	uc010rht.1	+	1	864	c.864G>A	c.(862-864)AGG>AGA	p.R288R		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	288	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						ACTCCTTCAGGAATGCTGAAG	0.368													25	41					0	0	0.003954	0	0
OR4C13	283092	broad.mit.edu	37	11	49974618	49974618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:49974618C>T	uc010rhz.1	+	1	644	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_001001955	NP_001001955	Q8NGP0	OR4CD_HUMAN	olfactory receptor, family 4, subfamily C,	215	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(3)|ovary(1)	4						CTCCTGGTCTCCTGCGTGGTC	0.488													42	52					0	0	0.010771	0	0
OR4S2	219431	broad.mit.edu	37	11	55418847	55418847	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:55418847C>T	uc001nhs.1	+	1	468	c.468C>T	c.(466-468)ATC>ATT	p.I156I		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				ACTCCATTATCCAAGTGGCTC	0.433													64	86					0	0	0.014410	0	0
OR5L2	26338	broad.mit.edu	37	11	55595333	55595333	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:55595333C>T	uc001nhy.1	+	1	639	c.639C>T	c.(637-639)ATC>ATT	p.I213I		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	213	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				CCATCATGATCATCCTCACCT	0.498										HNSCC(27;0.073)			50	47					0	0	0.014410	0	0
OR7E5P	219445	broad.mit.edu	37	11	55747404	55747404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:55747404G>A	uc010riu.1	-	4	608	c.53C>T	c.(52-54)TCT>TTT	p.S18F		NR_027688				SubName: Full=HCG2036849; SubName: Full=Seven transmembrane helix receptor;												0						GTGGGAGTCAGAGCCGATGGC	0.582													11	14					0	0	0.010729	0	0
OR8K5	219453	broad.mit.edu	37	11	55927659	55927659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:55927659C>T	uc010rja.1	-	1	135	c.135G>A	c.(133-135)ATG>ATA	p.M45I		NM_001004058	NP_001004058	Q8NH50	OR8K5_HUMAN	olfactory receptor, family 8, subfamily K,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)|skin(1)	4	Esophageal squamous(21;0.00693)	Lung NSC(402;0.197)|all_epithelial(135;0.236)				TCAAAATGATCATAGTTAGGT	0.428													26	46					0	0	0.003330	0	0
OR5T1	390155	broad.mit.edu	37	11	56043337	56043337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:56043337C>T	uc001nio.1	+	1	223	c.223C>T	c.(223-225)CTT>TTT	p.L75F		NM_001004745	NP_001004745	Q8NG75	OR5T1_HUMAN	olfactory receptor, family 5, subfamily T,	75	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|pancreas(1)	3	Esophageal squamous(21;0.00448)					GTACTATTTTCTTGGTGTTTT	0.353													20	27					0	0	0.008871	0	0
OR5R1	219479	broad.mit.edu	37	11	56184842	56184842	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:56184842G>A	uc010rji.1	-	1	867	c.867C>T	c.(865-867)ATC>ATT	p.I289I		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	289	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.I289F(1)		ovary(2)	2	Esophageal squamous(21;0.00448)					TTAGACTATAGATTAGGGGGT	0.358													32	51					0	0	0.004289	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958679	57958679	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:57958679C>T	uc010rka.1	+	1	717	c.717C>T	c.(715-717)TCC>TCT	p.S239S		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				AGACCTTCTCCACCTGCGCCT	0.567													30	44					0	0	0.009535	0	0
TCN1	6947	broad.mit.edu	37	11	59630112	59630112	+	Missense_Mutation	SNP	C	T	T	rs35287646	byFrequency	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:59630112C>T	uc001noj.2	-	3	441	c.343G>A	c.(343-345)GAT>AAT	p.D115N		NM_001062	NP_001053	P20061	TCO1_HUMAN	transcobalamin I precursor	115					cobalamin metabolic process|cobalamin transport|cobalt ion transport	extracellular region	cobalamin binding			ovary(2)	2		all_epithelial(135;0.198)			Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	AGGTGGTAATCATATATTAAG	0.363													15	52					0	0	0.003163	0	0
AHNAK	79026	broad.mit.edu	37	11	62294664	62294664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:62294664G>A	uc001ntl.2	-	5	7525	c.7225C>T	c.(7225-7227)CCC>TCC	p.P2409S	AHNAK_uc001ntk.1_Intron	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	2409					nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCCAATTTGGGAACATCTACA	0.483													17	44					0	0	0.004990	0	0
AHNAK	79026	broad.mit.edu	37	11	62303492	62303492	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:62303492G>A	uc001ntl.2	-	3	379	c.79C>T	c.(79-81)CAG>TAG	p.Q27*	AHNAK_uc001ntk.1_Nonsense_Mutation_p.Q27*	NM_001620	NP_001611	Q09666	AHNK_HUMAN	AHNAK nucleoprotein isoform 1	27	PDZ.				nervous system development	nucleus	protein binding			ovary(10)|pancreas(4)|skin(4)|upper_aerodigestive_tract(1)	19		Melanoma(852;0.155)				TCGTCCCTCTGGGCGATGGTC	0.642													21	24					0	0	0.003330	0	0
SLC22A25	387601	broad.mit.edu	37	11	62933578	62933578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:62933578C>T	uc001nwr.1	-	7	1223	c.1223G>A	c.(1222-1224)AGC>AAC	p.S408N	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_3'UTR	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	408	Helical; Name=9; (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						AAGCATCTGGCTTAGTCGACG	0.478													19	26					0	0	0.007413	0	0
SLC22A25	387601	broad.mit.edu	37	11	62948233	62948233	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:62948233G>A	uc001nwr.1	-	6	969	c.969C>T	c.(967-969)ACC>ACT	p.T323T	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Silent_p.T323T	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	323	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						CTTGCTTCATGGTGGATTTCA	0.398													22	20					0	0	0.014323	0	0
SLC22A9	114571	broad.mit.edu	37	11	63141197	63141197	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:63141197C>T	uc001nww.2	+	3	856	c.588C>T	c.(586-588)TTC>TTT	p.F196F	SLC22A9_uc001nwx.2_Intron	NM_080866	NP_543142	Q8IVM8	S22A9_HUMAN	solute carrier family 22 (organic anion/cation	196	Helical; (Potential).				transmembrane transport	integral to membrane				breast(2)|large_intestine(1)	3						CTCCCACCTTCCTCATTTACT	0.463													28	44					0	0	0.009535	0	0
CDC42BPG	55561	broad.mit.edu	37	11	64599096	64599096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:64599096C>T	uc001obs.3	-	28	3185	c.3185G>A	c.(3184-3186)GGT>GAT	p.G1062D		NM_017525	NP_059995	Q6DT37	MRCKG_HUMAN	CDC42 binding protein kinase gamma (DMPK-like)	1062	PH.				actin cytoskeleton reorganization|intracellular signal transduction	cell leading edge|centrosome	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			lung(3)|central_nervous_system(1)	4						CTGCAGCTCACCCAGCACCTG	0.687											OREG0004016	type=REGULATORY REGION|Gene=CDC42BPG|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	24	14					0	0	0.005443	0	0
POLA2	23649	broad.mit.edu	37	11	65046214	65046214	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:65046214C>T	uc001odj.2	+	6	817	c.475C>T	c.(475-477)CAG>TAG	p.Q159*	POLA2_uc009yqf.1_Nonsense_Mutation_p.Q159*|POLA2_uc010rod.1_5'UTR|POLA2_uc001odk.2_5'Flank	NM_002689	NP_002680	Q14181	DPOA2_HUMAN	DNA-directed DNA polymerase alpha 2	159					DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	nucleoplasm	DNA binding				0					Dacarbazine(DB00851)	TACTCCCTCCCAGAAATACAA	0.443													63	74					0	0	0.014410	0	0
NPAS4	266743	broad.mit.edu	37	11	66192014	66192014	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:66192014G>A	uc001ohx.1	+	7	1829	c.1653G>A	c.(1651-1653)GAG>GAA	p.E551E	NPAS4_uc010rpc.1_Silent_p.E341E	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	551					transcription, DNA-dependent		DNA binding|signal transducer activity				0						CCTTCCCAGAGCAACTGAGCC	0.582													68	105					0	0	0.014410	0	0
RPS6KB2	6199	broad.mit.edu	37	11	67200847	67200847	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:67200847G>A	uc001old.2	+	10	917	c.835G>A	c.(835-837)GAT>AAT	p.D279N	RPS6KB2_uc001olf.2_Missense_Mutation_p.D79N|RPS6KB2_uc001olg.2_Missense_Mutation_p.D279N|RPS6KB2_uc009yrq.2_Missense_Mutation_p.D79N|RPS6KB2_uc001ole.2_RNA|RPS6KB2_uc001olh.2_Intron|RPS6KB2_uc009yrr.2_Missense_Mutation_p.D110N	NM_003952	NP_003943	Q9UBS0	KS6B2_HUMAN	ribosomal protein S6 kinase, 70kDa, polypeptide	279	Protein kinase.				nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of translational initiation|translation	nucleoplasm	ATP binding|protein serine/threonine kinase activity			ovary(2)|central_nervous_system(2)|stomach(1)|lung(1)|salivary_gland(1)	7			BRCA - Breast invasive adenocarcinoma(15;3.26e-06)			GAAAACCATGGATAAGATCAT	0.627													44	55					0	0	0.014410	0	0
CABP2	51475	broad.mit.edu	37	11	67286622	67286622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:67286622C>T	uc001omc.1	-	7	753	c.651G>A	c.(649-651)ATG>ATA	p.M217I	CABP2_uc001omd.1_Missense_Mutation_p.M160I|CABP2_uc001ome.1_Missense_Mutation_p.M223I	NM_016366	NP_057450	Q9NPB3	CABP2_HUMAN	calcium binding protein 2 isoform 1	217	EF-hand 4.				signal transduction	Golgi apparatus|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1						ACCGAGACATCATTCGCACAA	0.572													18	27					0	0	0.008871	0	0
ALDH3B2	222	broad.mit.edu	37	11	67430692	67430692	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:67430692G>A	uc001omr.2	-	10	1591	c.1152C>T	c.(1150-1152)CTC>CTT	p.L384L	ALDH3B2_uc001oms.2_Silent_p.L384L	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	384					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	ACGCTCACAGGAGGGTGCAGC	0.587													71	86					0	0	0.014410	0	0
KRTAP5-8	57830	broad.mit.edu	37	11	71249145	71249145	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:71249145G>A	uc001oqr.1	+	1	75	c.44G>A	c.(43-45)GGG>GAG	p.G15E		NM_021046	NP_066384	O75690	KRA58_HUMAN	keratin associated protein 5-8	15						extracellular region|keratin filament	structural constituent of epidermis				0						TCCGGCTGTGGGGGCTGCGGC	0.652													73	82					0	0	0.014410	0	0
INPPL1	3636	broad.mit.edu	37	11	71939529	71939530	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:71939529_71939530CC>TT	uc001osf.2	+	3	531_532	c.384_385CC>TT	c.(382-387)GACCGG>GATTGG	p.R129W	INPPL1_uc001osg.2_5'UTR	NM_001567	NP_001558	O15357	SHIP2_HUMAN	inositol polyphosphate phosphatase-like 1	129					actin filament organization|cell adhesion|endocytosis	actin cortical patch|cytosol	actin binding|SH2 domain binding|SH3 domain binding			skin(2)|ovary(1)|breast(1)	4						CACCGGATGACCGGGATGCCTC	0.649													28	62					0	0	0.004672	0	0
SPCS2	9789	broad.mit.edu	37	11	74680701	74680701	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:74680701A>G	uc001ovu.2	+	4	490	c.451A>G	c.(451-453)ATG>GTG	p.M151V		NM_014752	NP_055567	Q15005	SPCS2_HUMAN	signal peptidase complex subunit 2 homolog	151	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion|signal peptide processing	integral to membrane|microsome|signal peptidase complex	peptidase activity			breast(1)	1						TCCTACAGGAATGGATCCTGA	0.418													50	57					0	0	0.014410	0	0
LRRC32	2615	broad.mit.edu	37	11	76371341	76371341	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:76371341G>A	uc001oxq.3	-	3	1539	c.1296C>T	c.(1294-1296)GGC>GGT	p.G432G	LRRC32_uc001oxr.3_Silent_p.G432G|LRRC32_uc010rsf.1_Silent_p.G432G	NM_005512	NP_005503	Q14392	LRC32_HUMAN	leucine rich repeat containing 32 precursor	432	LRR 15.|Extracellular (Potential).					integral to plasma membrane					0						AGCCGGAGGGGCCAGGCTCAT	0.657													16	8					0	0	0.004990	0	0
C11orf67	28971	broad.mit.edu	37	11	77553552	77553552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:77553552C>T	uc001oyq.2	+	2	108	c.10C>T	c.(10-12)CCT>TCT	p.P4S	C11orf67_uc001oyp.2_Missense_Mutation_p.P4S|C11orf67_uc001oyr.1_Missense_Mutation_p.P4S	NM_024684	NP_078960	Q9H7C9	CK067_HUMAN	hypothetical protein LOC28971	4											0	all_cancers(14;5.69e-19)|all_epithelial(13;2.15e-21)|Breast(9;1.16e-15)|Ovarian(111;0.152)		Epithelial(5;1.37e-49)|all cancers(3;5.58e-46)|BRCA - Breast invasive adenocarcinoma(5;7.26e-31)			TATGACTTCCCCTGAAATTGC	0.373													23	25					0	0	0.002780	0	0
ODZ4	26011	broad.mit.edu	37	11	78498042	78498042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:78498042C>T	uc001ozl.3	-	16	2729	c.2266G>A	c.(2266-2268)GAC>AAC	p.D756N		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	756	Extracellular (Potential).|EGF-like 6.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						GCCCGCTGGTCGCAGGCTGCC	0.697													5	2					0	0	0.000602	0	0
PICALM	8301	broad.mit.edu	37	11	85701401	85701401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:85701401G>A	uc001pbm.2	-	13	1586	c.1300C>T	c.(1300-1302)CCA>TCA	p.P434S	PICALM_uc001pbl.2_Intron|PICALM_uc001pbn.2_Missense_Mutation_p.P427S|PICALM_uc010rtl.1_Intron|PICALM_uc010rtk.1_Intron|PICALM_uc001pbo.1_Missense_Mutation_p.P66S	NM_007166	NP_009097	Q13492	PICAL_HUMAN	phosphatidylinositol-binding clathrin assembly	434					clathrin coat assembly|endosome transport|negative regulation of receptor-mediated endocytosis|positive regulation of transcription, DNA-dependent|receptor internalization|regulation of protein localization	clathrin coat|clathrin-coated vesicle|coated pit|Golgi apparatus|nucleus|postsynaptic membrane|presynaptic membrane	1-phosphatidylinositol binding|clathrin heavy chain binding			urinary_tract(1)|ovary(1)	2		Acute lymphoblastic leukemia(157;7.42e-07)|all_hematologic(158;0.00092)				TTTAAGCTTGGAATGGCATCA	0.353			T	MLLT10|MLL	TALL|AML|								22	35					0	0	0.014323	0	0
GRM5	2915	broad.mit.edu	37	11	88386377	88386377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:88386377C>T	uc001pcq.2	-	3	1306	c.1106G>A	c.(1105-1107)GGG>GAG	p.G369E	GRM5_uc009yvm.2_Missense_Mutation_p.G369E	NM_001143831	NP_001137303	P41594	GRM5_HUMAN	glutamate receptor, metabotropic 5 isoform a	369	Extracellular (Potential).				activation of phospholipase C activity by metabotropic glutamate receptor signaling pathway|synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity|glutamate receptor activity			central_nervous_system(4)|ovary(2)|lung(2)|breast(1)	9		Acute lymphoblastic leukemia(157;2.54e-05)|all_hematologic(158;0.00834)			Acamprosate(DB00659)	CTGTGGAAACCCTTCCAGTCG	0.383													23	29					0	0	0.002780	0	0
FOLH1B	219595	broad.mit.edu	37	11	89421805	89421805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:89421805G>A	uc001pda.2	+	10	1188	c.662G>A	c.(661-663)GGA>GAA	p.G221E		NM_153696	NP_710163	Q9HBA9	FOH1B_HUMAN	folate hydrolase 1B	221					proteolysis	cytoplasm	dipeptidase activity|metal ion binding|metallopeptidase activity			ovary(3)|skin(2)|central_nervous_system(1)	6						CAACGACTTGGAATTGCTTCA	0.299													60	67					0	0	0.014410	0	0
NAALAD2	10003	broad.mit.edu	37	11	89892443	89892443	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:89892443G>A	uc001pdf.3	+	8	1036	c.927G>A	c.(925-927)TGG>TGA	p.W309*	NAALAD2_uc009yvx.2_Intron|NAALAD2_uc009yvy.2_Intron|NAALAD2_uc001pdd.2_3'UTR|NAALAD2_uc001pde.2_Intron	NM_005467	NP_005458	Q9Y3Q0	NALD2_HUMAN	N-acetylated alpha-linked acidic dipeptidase 2	309	Extracellular (Potential).|NAALADase.				proteolysis	integral to membrane	carboxypeptidase activity|dipeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity|serine-type peptidase activity			pancreas(1)|skin(1)	2		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00556)				ATAAGAGTTGGAAGGGAGCCC	0.363													19	28					0	0	0.014323	0	0
FAT3	120114	broad.mit.edu	37	11	92085899	92085899	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:92085899C>T	uc001pdj.3	+	1	638	c.621C>T	c.(619-621)CAC>CAT	p.H207H		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	207	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTCAGTTCACCCCACGAGTG	0.408										TCGA Ovarian(4;0.039)			206	249					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92523187	92523187	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:92523187G>A	uc001pdj.3	+	7	4431	c.4414G>A	c.(4414-4416)GAT>AAT	p.D1472N		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1472	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AATTTCCGAGGATGTGCTTCC	0.428										TCGA Ovarian(4;0.039)			155	225					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92523341	92523341	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:92523341G>A	uc001pdj.3	+	7	4585	c.4568G>A	c.(4567-4569)AGG>AAG	p.R1523K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1523	Cadherin 14.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ACTGCCGAGAGGCTGGACCAT	0.498										TCGA Ovarian(4;0.039)			156	295					0	0	0.014410	0	0
FAT3	120114	broad.mit.edu	37	11	92599969	92599969	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:92599969C>T	uc001pdj.3	+	21	11738	c.11721C>T	c.(11719-11721)ATC>ATT	p.I3907I	FAT3_uc001pdi.3_Silent_p.I347I	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3907	Laminin G-like.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TCTTGGGCATCTCGGGCCGTG	0.602										TCGA Ovarian(4;0.039)			174	230					0	0	0.014410	0	0
SESN3	143686	broad.mit.edu	37	11	94924756	94924756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:94924756C>T	uc001pfk.1	-	3	376	c.154G>A	c.(154-156)GCA>ACA	p.A52T	SESN3_uc010rug.1_5'UTR|SESN3_uc001pfl.2_Missense_Mutation_p.A52T	NM_144665	NP_653266	P58005	SESN3_HUMAN	sestrin 3	52					cell cycle arrest	nucleus					0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.234)		ACTGTGTTTGCTTGGACAACC	0.363													23	17					0	0	0.002780	0	0
CCDC82	79780	broad.mit.edu	37	11	96117829	96117829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:96117829C>T	uc009ywp.2	-	1	326	c.83G>A	c.(82-84)CGA>CAA	p.R28Q	CCDC82_uc009ywq.2_Missense_Mutation_p.R28Q|CCDC82_uc001pfx.3_Missense_Mutation_p.R28Q|CCDC82_uc009ywr.2_Missense_Mutation_p.R28Q|CCDC82_uc009yws.2_Missense_Mutation_p.R28Q	NM_024725	NP_079001	Q8N4S0	CCD82_HUMAN	coiled-coil domain containing 82	28							protein binding			ovary(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)		BRCA - Breast invasive adenocarcinoma(274;0.154)		TCTTTTAGTTCGCCTCCAATC	0.353													30	37					0	0	0.007291	0	0
CNTN5	53942	broad.mit.edu	37	11	99827605	99827605	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:99827605C>T	uc001pga.2	+	8	1080	c.741C>T	c.(739-741)ATC>ATT	p.I247I	CNTN5_uc009ywv.1_Silent_p.I247I|CNTN5_uc001pfz.2_Silent_p.I247I|CNTN5_uc001pgb.2_Silent_p.I173I	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	247	Ig-like C2-type 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GGCGGTTCATCTCCCAGGAGA	0.428													22	36					0	0	0.014323	0	0
CNTN5	53942	broad.mit.edu	37	11	100169975	100169975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:100169975G>A	uc001pga.2	+	20	2806	c.2467G>A	c.(2467-2469)GAA>AAA	p.E823K	CNTN5_uc001pfz.2_Missense_Mutation_p.E823K|CNTN5_uc001pgb.2_Missense_Mutation_p.E749K|CNTN5_uc010ruk.1_Missense_Mutation_p.E94K	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	823	Fibronectin type-III 2.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		TGGCTGGAAGGAAAAAATGGT	0.408													8	30					0	0	0.003080	0	0
PGR	5241	broad.mit.edu	37	11	100962567	100962567	+	Silent	SNP	G	A	A	rs11571179		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:100962567G>A	uc001pgh.2	-	3	2573	c.1830C>T	c.(1828-1830)ATC>ATT	p.I610I	PGR_uc001pgi.2_Silent_p.I610I|PGR_uc009yww.1_RNA|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_Intron	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	610	NR C4-type.|Nuclear receptor.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	TTTTATCAACGATGCAGTCAT	0.378													9	9					0	0	0.008291	0	0
MMP1	4312	broad.mit.edu	37	11	102661530	102661530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:102661530C>T	uc001phi.2	-	9	1347	c.1204G>A	c.(1204-1206)GAA>AAA	p.E402K	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.E336K	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	402	Hemopexin-like 3.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		CGTTTATATTCATCATACCTG	0.363													38	32					0	0	0.005524	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103057112	103057112	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:103057112A>C	uc001pho.2	+	42	6919	c.6775A>C	c.(6775-6777)ACT>CCT	p.T2259P	DYNC2H1_uc001phn.1_Missense_Mutation_p.T2259P|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	2259	AAA 3 (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		TAACGGCTTAACTCTTCCAGT	0.418													31	26					0	0	0.012213	0	0
NCAM1	4684	broad.mit.edu	37	11	113078697	113078697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:113078697G>A	uc009yyq.1	+	7	1229	c.535G>A	c.(535-537)GAT>AAT	p.D179N	NCAM1_uc001pno.2_Missense_Mutation_p.D179N	NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	297	Ig-like C2-type 3.|Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		TGGCGAGCAGGATGCGACCAT	0.453													5	15					0	0	0.000602	0	0
SIK3	23387	broad.mit.edu	37	11	116744293	116744293	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:116744293G>A	uc001ppy.2	-	13	1503	c.1467C>T	c.(1465-1467)GGC>GGT	p.G489G	SIK3_uc001ppz.2_Silent_p.G388G|SIK3_uc001pqa.2_Silent_p.G441G	NM_025164	NP_079440	Q9Y2K2	SIK3_HUMAN	serine/threonine-protein kinase QSK	489				LGR -> MGL (in Ref. 4; AAH63887).		cytoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(4)|breast(3)|stomach(2)|lung(1)|skin(1)|kidney(1)	12						ATGCCCTCCGGCCAAGGGGGC	0.617													222	321					0	0	0.014410	0	0
PDZD3	79849	broad.mit.edu	37	11	119059486	119059487	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:119059486_119059487CC>TT	uc001pwb.2	+	7	1919_1920	c.1395_1396CC>TT	c.(1393-1398)TCCCGA>TCTTGA	p.R466*	PDZD3_uc001pvy.2_Nonsense_Mutation_p.R386*|PDZD3_uc001pvz.2_Nonsense_Mutation_p.R400*|PDZD3_uc010rzd.1_Nonsense_Mutation_p.R387*|PDZD3_uc001pwa.2_Nonsense_Mutation_p.R96*			Q86UT5	NHRF4_HUMAN	RecName: Full=Na(+)/H(+) exchange regulatory cofactor NHE-RF4;          Short=NHERF-4; AltName: Full=PDZ domain-containing protein 3; AltName: Full=PDZ domain-containing protein 2; AltName: Full=Intestinal and kidney-enriched PDZ protein; AltName: Full=Sodium-hydrogen exchanger regulatory factor 4;	466					cGMP-mediated signaling|ion transport|negative regulation of cGMP biosynthetic process|response to toxin|water transport	apical part of cell|brush border|cytosol|membrane fraction|subapical complex	guanylate cyclase inhibitor activity|ion channel inhibitor activity|protein C-terminus binding			breast(1)	1	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;7.52e-05)		CTCTTGGCTCCCGACAGTGCTT	0.619													42	44					0	0	0.004672	0	0
PVRL1	5818	broad.mit.edu	37	11	119549429	119549429	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:119549429G>A	uc001pwv.2	-	2	298	c.126C>T	c.(124-126)TTC>TTT	p.F42F	PVRL1_uc001pwu.1_Silent_p.F42F|PVRL1_uc001pww.2_Silent_p.F42F	NM_002855	NP_002846	Q15223	PVRL1_HUMAN	poliovirus receptor-related 1 isoform 1	42	Extracellular (Potential).|Ig-like V-type.				adherens junction organization|cell junction assembly|entry of virus into host cell|heterophilic cell-cell adhesion|homophilic cell adhesion|immune response	cell-cell adherens junction|extracellular region|integral to membrane	cell adhesion molecule binding|coreceptor activity|protein homodimerization activity				0		Breast(348;0.037)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.29e-05)		CTGTGCCGATGAAGCCATACA	0.607													8	5					0	0	0.003080	0	0
ARHGEF12	23365	broad.mit.edu	37	11	120310856	120310856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:120310856G>A	uc001pxl.1	+	13	1025	c.1018G>A	c.(1018-1020)GGA>AGA	p.G340R	ARHGEF12_uc009zat.2_Missense_Mutation_p.G321R|ARHGEF12_uc010rzn.1_Missense_Mutation_p.G237R|ARHGEF12_uc009zau.1_Missense_Mutation_p.G237R	NM_015313	NP_056128	Q9NZN5	ARHGC_HUMAN	Rho guanine nucleotide exchange factor (GEF) 12	340					apoptosis|axon guidance|G-protein coupled receptor protein signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|membrane	G-protein-coupled receptor binding|GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			lung(2)|breast(2)|skin(2)|ovary(1)	7		Breast(109;0.000813)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_hematologic(192;0.107)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.231)		ATCACTTGTCGGAAGTCCCTC	0.373			T	MLL	AML								39	59					0	0	0.009718	0	0
TECTA	7007	broad.mit.edu	37	11	121023770	121023770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:121023770C>T	uc010rzo.1	+	12	4286	c.4286C>T	c.(4285-4287)TCC>TTC	p.S1429F		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1429					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GGCTGCTACTCCGATGGCAAA	0.572													9	18					0	0	0.004482	0	0
TECTA	7007	broad.mit.edu	37	11	121059869	121059869	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:121059869G>A	uc010rzo.1	+	21	6243	c.6243G>A	c.(6241-6243)AGG>AGA	p.R2081R		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	2081					cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		GACCTATTAGGAGAAAAAGTA	0.428													12	18					0	0	0.010729	0	0
SORL1	6653	broad.mit.edu	37	11	121393634	121393634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:121393634G>A	uc001pxx.2	+	11	1612	c.1532G>A	c.(1531-1533)GGA>GAA	p.G511E		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	511	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		GGCTCAGTGGGAAAGAACTTG	0.473													24	39					0	0	0.005443	0	0
SORL1	6653	broad.mit.edu	37	11	121416054	121416054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:121416054C>T	uc001pxx.2	+	14	2047	c.1967C>T	c.(1966-1968)CCC>CTC	p.P656L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	656	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CGGCGGACCCCCCATGCCACA	0.542													22	38					0	0	0.012319	0	0
C11orf63	79864	broad.mit.edu	37	11	122756873	122756873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:122756873C>T	uc001pym.2	+	2	613	c.316C>T	c.(316-318)CAT>TAT	p.H106Y	C11orf63_uc001pyl.1_Missense_Mutation_p.H106Y	NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	106										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		GCAAAACCACCATACCTGGGA	0.483													23	44					0	0	0.003330	0	0
LOC341056	341056	broad.mit.edu	37	11	122889045	122889045	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:122889045G>A	uc010rzt.1	+	1		c.772G>A				NR_027288				full-length cDNA clone CS0DC021YJ17 of Neuroblastoma Cot 25-normalized of Homo sapiens (human).												0						AGGCTGCTCTGAAGCGCACGA	0.507													10	17					0	0	0.001855	0	0
OR6M1	390261	broad.mit.edu	37	11	123676143	123676143	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:123676143G>A	uc010rzz.1	-	1	915	c.915C>T	c.(913-915)ATC>ATT	p.I305I		NM_001005325	NP_001005325	Q8NGM8	OR6M1_HUMAN	olfactory receptor, family 6, subfamily M,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.028)		TCAAGGTCATGATTCTGTTCA	0.328													24	57					0	0	0.004656	0	0
OR10G7	390265	broad.mit.edu	37	11	123908965	123908965	+	Silent	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:123908965A>C	uc001pzq.1	-	1	744	c.744T>G	c.(742-744)CTT>CTG	p.L248L		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		CAAAGAAGCAAAGGACCACGA	0.562													21	32					0	0	0.014323	0	0
OR8B4	283162	broad.mit.edu	37	11	124293858	124293858	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:124293858G>A	uc010sak.1	-	1	910	c.910C>T	c.(910-912)CTG>TTG	p.L304L		NM_001005196	NP_001005196	Q96RC9	OR8B4_HUMAN	olfactory receptor, family 8, subfamily B,	304	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		ACTCTCTTCAGGGTTTTGCCC	0.433													14	13					0	0	0.002450	0	0
ARHGAP32	9743	broad.mit.edu	37	11	128842523	128842523	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:128842523C>A	uc009zcp.2	-	21	3836	c.3836G>T	c.(3835-3837)AGC>ATC	p.S1279I	ARHGAP32_uc009zcq.1_3'UTR|ARHGAP32_uc009zco.2_Missense_Mutation_p.S238I|ARHGAP32_uc001qez.2_Missense_Mutation_p.S930I	NM_001142685	NP_001136157	A7KAX9	RHG32_HUMAN	Rho GTPase-activating protein isoform 1	1279					cell communication|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell cortex|cell junction|cytosol|dendritic spine|endoplasmic reticulum membrane|endosome membrane|Golgi membrane|postsynaptic density|postsynaptic membrane	GTPase activator activity|phosphatidylinositol binding			lung(3)|ovary(2)	5						CACATCCCAGCTGGCTTCCTT	0.562													28	84					1.2476e-16	1.325e-16	0.006320	1	0
ST14	6768	broad.mit.edu	37	11	130060463	130060463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:130060463G>A	uc001qfw.2	+	7	942	c.749G>A	c.(748-750)GGG>GAG	p.G250E	ST14_uc010sca.1_Missense_Mutation_p.G60E	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	250	Extracellular (Potential).|CUB 1.				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	GCCCTGCGGGGGGACGCCGAC	0.697													18	18					0	0	0.010504	0	0
SNX19	399979	broad.mit.edu	37	11	130781612	130781612	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:130781612G>T	uc001qgk.3	-	2	2277	c.1729C>A	c.(1729-1731)CAC>AAC	p.H577N	SNX19_uc010sce.1_5'UTR|SNX19_uc010scf.1_Missense_Mutation_p.H20N|SNX19_uc010scg.1_5'UTR|SNX19_uc001qgl.3_Missense_Mutation_p.H577N|SNX19_uc009zcx.1_RNA	NM_014758	NP_055573	Q92543	SNX19_HUMAN	sorting nexin 19	577	PX.				cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|lung(2)	4	all_hematologic(175;0.0597)	Lung NSC(97;0.000272)|all_lung(97;0.000608)|Breast(109;0.000962)|all_neural(223;0.0298)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;0.0195)|Lung(977;0.233)		TTCACAGTGTGGTAGGCCAGC	0.507													22	46					8.04996e-18	8.55721e-18	0.012319	1	0
NCAPD3	23310	broad.mit.edu	37	11	134048799	134048799	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:134048799G>A	uc001qhd.1	-	21	3198	c.2592C>T	c.(2590-2592)GCC>GCT	p.A864A	NCAPD3_uc010scm.1_RNA|NCAPD3_uc009zda.1_RNA	NM_015261	NP_056076	P42695	CNDD3_HUMAN	non-SMC condensin II complex, subunit D3	864					cell division|mitotic chromosome condensation	nuclear centromeric heterochromatin|nuclear condensin complex	methylated histone residue binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	5	all_hematologic(175;0.127)	all_cancers(12;1.68e-21)|all_epithelial(12;5.86e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;8.74e-10)|BRCA - Breast invasive adenocarcinoma(10;1e-08)|all cancers(11;1.46e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00345)|Lung(977;0.227)		GACACAGCTGGGCTATATCCC	0.428													14	14					0	0	0.003163	0	0
VPS26B	112936	broad.mit.edu	37	11	134113052	134113052	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr11:134113052C>T	uc001qhe.2	+	4	1041	c.585C>T	c.(583-585)TTC>TTT	p.F195F		NM_052875	NP_443107	Q4G0F5	VP26B_HUMAN	vacuolar protein sorting 26 homolog B	195					protein transport|vacuolar transport	cytosol|retromer complex					0	all_hematologic(175;0.127)	all_cancers(12;1.1e-21)|all_epithelial(12;3.77e-16)|all_lung(97;1.19e-05)|Lung NSC(97;2.76e-05)|Breast(109;0.000182)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;2.43e-10)|all cancers(11;2.94e-09)|BRCA - Breast invasive adenocarcinoma(10;9.57e-09)|OV - Ovarian serous cystadenocarcinoma(99;0.00164)|Lung(977;0.216)		AGATATACTTCCTGCTGGTGA	0.443													19	31					0	0	0.014323	0	0
KDM5A	5927	broad.mit.edu	37	12	416839	416839	+	Silent	SNP	G	A	A	rs61750262		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:416839G>A	uc001qif.1	-	23	4074	c.3711C>T	c.(3709-3711)CCC>CCT	p.P1237P	KDM5A_uc001qie.1_Silent_p.P1237P	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	1237					chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						GCAACCGTACGGGCAACTTCT	0.507			T 	NUP98	AML								31	33					0	0	0.013726	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1965396	1965396	+	Splice_Site	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:1965396C>T	uc001qjp.2	-	21	2240	c.2009_splice	c.e21-1	p.G670_splice	CACNA2D4_uc009zds.1_Splice_Site|CACNA2D4_uc009zdt.1_Splice_Site_p.G534_splice|CACNA2D4_uc009zdr.1_5'Flank	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4							integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		TCATGCAGGCCTGAAACCAGA	0.507													86	103					0	0	0.014410	0	0
PLEKHG6	55200	broad.mit.edu	37	12	6422940	6422940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:6422940C>T	uc001qnr.2	+	3	432	c.284C>T	c.(283-285)CCC>CTC	p.P95L	PLEKHG6_uc001qns.2_Missense_Mutation_p.P95L|PLEKHG6_uc010sew.1_Missense_Mutation_p.P95L|PLEKHG6_uc010sex.1_Missense_Mutation_p.P63L	NM_018173	NP_060643	Q3KR16	PKHG6_HUMAN	pleckstrin homology domain-containing family G	95					regulation of Rho protein signal transduction	cleavage furrow|cytoplasm|spindle pole	GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(1)|skin(1)	2						CTTCACTCCCCCAAACTCAAG	0.637													32	33					0	0	0.013726	0	0
C1R	715	broad.mit.edu	37	12	7242713	7242713	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:7242713G>A	uc010sfy.1	-	3	422	c.363C>T	c.(361-363)TCC>TCT	p.S121S	C1R_uc010sfz.1_Silent_p.S135S|C1R_uc010sga.1_Silent_p.S87S	NM_001733	NP_001724	P00736	C1R_HUMAN	complement component 1, r subcomponent	121	CUB 1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity				0					Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	TCTCCTCGTTGGAGAAGTCTG	0.547													7	9					0	0	0.004482	0	0
C12orf36	283422	broad.mit.edu	37	12	13526349	13526349	+	Missense_Mutation	SNP	G	A	A	rs143075618	byFrequency	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:13526349G>A	uc001rbs.1	-	3	424	c.206C>T	c.(205-207)TCG>TTG	p.S69L		NM_182558	NP_872364			hypothetical protein LOC283422												0				BRCA - Breast invasive adenocarcinoma(232;0.198)		TCCAGGGAACGATTCCTCATT	0.453													32	35					0	0	0.010818	0	0
SLCO1A2	6579	broad.mit.edu	37	12	21457408	21457408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:21457408G>A	uc001rer.2	-	5	793	c.542C>T	c.(541-543)TCC>TTC	p.S181F	SLCO1A2_uc001res.2_Missense_Mutation_p.S181F|SLCO1A2_uc010siq.1_Missense_Mutation_p.S49F|SLCO1A2_uc010sio.1_Missense_Mutation_p.S49F|SLCO1A2_uc010sip.1_Missense_Mutation_p.S49F|SLCO1A2_uc001ret.2_Missense_Mutation_p.S179F|SLCO1A2_uc001reu.2_Missense_Mutation_p.S161F	NM_021094	NP_066580	P46721	SO1A2_HUMAN	organic anion transporting polypeptide A	181	Helical; Name=4; (Potential).				bile acid metabolic process|sodium-independent organic anion transport	integral to membrane|plasma membrane	bile acid transmembrane transporter activity|organic anion transmembrane transporter activity			large_intestine(1)|pancreas(1)|ovary(1)|skin(1)	4						TTCTATATAGGAAATACCCAA	0.343													23	22					0	0	0.012319	0	0
ABCC9	10060	broad.mit.edu	37	12	22001151	22001151	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:22001151C>T	uc001rfi.1	-	23	2819	c.2799G>A	c.(2797-2799)GAG>GAA	p.E933E	ABCC9_uc001rfh.2_Silent_p.E933E|ABCC9_uc001rfj.1_Silent_p.E897E	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	933	Cytoplasmic (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	GAGTTTTCCTCTCTAAAGTAG	0.413													28	51					0	0	0.012213	0	0
STK38L	23012	broad.mit.edu	37	12	27475360	27475360	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:27475360C>A	uc001rhr.2	+	14	1566	c.1367C>A	c.(1366-1368)CCC>CAC	p.P456H	STK38L_uc001rhs.2_RNA|STK38L_uc010sjm.1_Missense_Mutation_p.P363H|STK38L_uc010sjn.1_Missense_Mutation_p.P194H|STK38L_uc010sjo.1_Missense_Mutation_p.P121H	NM_015000	NP_055815	Q9Y2H1	ST38L_HUMAN	serine/threonine kinase 38 like	456					intracellular protein kinase cascade|regulation of cellular component organization	actin cytoskeleton|cytoplasm	actin binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|kidney(1)	5	Colorectal(261;0.0847)					GGCTCTATCCCCACCTACATG	0.433													49	98					2.47907e-22	2.64737e-22	0.014410	1	0
DBX2	440097	broad.mit.edu	37	12	45410265	45410265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:45410265G>A	uc001rok.1	-	4	996	c.824C>T	c.(823-825)CCA>CTA	p.P275L		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	275						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		TGAAGGACATGGAGAAGGGAA	0.493													41	56					0	0	0.009718	0	0
DBX2	440097	broad.mit.edu	37	12	45410267	45410267	+	Silent	SNP	A	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:45410267A>T	uc001rok.1	-	4	994	c.822T>A	c.(820-822)TCT>TCA	p.S274S		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	274						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		AAGGACATGGAGAAGGGAAAC	0.493													41	57					0	0	0.009718	0	0
OR8S1	341568	broad.mit.edu	37	12	48920048	48920048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:48920048C>T	uc010slu.1	+	1	634	c.634C>T	c.(634-636)CTT>TTT	p.L212F		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						GGGAAACTTCCTTTTGGTCTT	0.532													21	38					0	0	0.012319	0	0
OR8S1	341568	broad.mit.edu	37	12	48921757	48921757	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:48921757G>A	uc010slu.1	+	2	951	c.951G>A	c.(949-951)TGG>TGA	p.W317*		NM_001005203	NP_001005203	Q8NH09	OR8S1_HUMAN	olfactory receptor, family 8, subfamily S,	317	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGGCCAGATGGAAGAGACCAG	0.582													17	28					0	0	0.006122	0	0
ACVR1B	91	broad.mit.edu	37	12	52370179	52370179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:52370179C>T	uc001rzn.2	+	3	442	c.400C>T	c.(400-402)CCG>TCG	p.P134S	ACVR1B_uc001rzl.2_Missense_Mutation_p.P134S|ACVR1B_uc001rzm.2_Missense_Mutation_p.P134S|ACVR1B_uc010snn.1_Missense_Mutation_p.P134S	NM_004302	NP_004293	P36896	ACV1B_HUMAN	activin A receptor, type IB isoform a precursor	134	Helical; (Potential).				G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|peptidyl-threonine phosphorylation|positive regulation of activin receptor signaling pathway|positive regulation of erythrocyte differentiation|protein autophosphorylation|transmembrane receptor protein serine/threonine kinase signaling pathway	cell surface	activin receptor activity, type I|ATP binding|metal ion binding|SMAD binding|transforming growth factor beta receptor activity|ubiquitin protein ligase binding			pancreas(4)|breast(2)|ovary(1)|lung(1)|kidney(1)	9				BRCA - Breast invasive adenocarcinoma(357;0.104)	Adenosine triphosphate(DB00171)	CATCGCCGGCCCGGTGTTCCT	0.537													31	51					0	0	0.009535	0	0
KRT84	3890	broad.mit.edu	37	12	52777539	52777539	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:52777539C>T	uc001sah.1	-	2	638	c.590G>A	c.(589-591)TGG>TAG	p.W197*		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	197	Rod.|Coil 1A.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GAGGAAGCTCCACTTGGTCTC	0.507													30	32					0	0	0.012213	0	0
KRT76	51350	broad.mit.edu	37	12	53164827	53164827	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:53164827C>T	uc001sax.2	-	7	1494	c.1440G>A	c.(1438-1440)GTG>GTA	p.V480V		NM_015848	NP_056932	Q01546	K22O_HUMAN	keratin 76	480	Rod.|Coil 2.				cytoskeleton organization	keratin filament	structural molecule activity			breast(1)|skin(1)	2						TGGCAATCTCCACATCCAGGG	0.552													22	41					0	0	0.014323	0	0
KRT78	196374	broad.mit.edu	37	12	53242411	53242411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:53242411G>A	uc001sbc.1	-	1	368	c.304C>T	c.(304-306)CCC>TCC	p.P102S		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	102	Head.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						TGGAACTGGGGATCGATCTCA	0.572													19	22					0	0	0.012319	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54905807	54905807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:54905807G>A	uc001sgc.3	+	9	938	c.859G>A	c.(859-861)GGC>AGC	p.G287S	NCKAP1L_uc010sox.1_5'UTR|NCKAP1L_uc010soy.1_Missense_Mutation_p.G237S	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	287					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						GTGTCTGCAGGGCTCCCTCTA	0.532													30	38					0	0	0.003755	0	0
OR9K2	441639	broad.mit.edu	37	12	55524300	55524300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:55524300G>A	uc010spe.1	+	1	748	c.748G>A	c.(748-750)GTT>ATT	p.V250I		NM_001005243	NP_001005243	Q8NGE7	OR9K2_HUMAN	olfactory receptor, family 9, subfamily K,	250	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						TGTGTCCACAGTTCTAAAGAT	0.368													25	48					0	0	0.005443	0	0
OR6C1	390321	broad.mit.edu	37	12	55714467	55714467	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:55714467C>T	uc010spi.1	+	1	84	c.84C>T	c.(82-84)TTC>TTT	p.F28F		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	28	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						TCTTTGTCTTCCTGCTCATCA	0.423													21	34					0	0	0.002780	0	0
OR6C2	341416	broad.mit.edu	37	12	55846618	55846618	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:55846618C>T	uc001sgz.1	+	1	621	c.621C>T	c.(619-621)ATC>ATT	p.I207I		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	207	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CACTCATTATCACCCTAGTTT	0.393													44	66					0	0	0.010771	0	0
SUOX	6821	broad.mit.edu	37	12	56397533	56397533	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:56397533G>A	uc001six.2	+	6	686	c.360G>A	c.(358-360)GGG>GGA	p.G120G	SUOX_uc001siy.2_Silent_p.G120G|SUOX_uc001siz.2_Silent_p.G120G|SUOX_uc001sja.2_Silent_p.G120G	NM_000456	NP_000447	P51687	SUOX_HUMAN	sulfite oxidase precursor	120	Cytochrome b5 heme-binding.					mitochondrial intermembrane space	electron carrier activity|molybdenum ion binding|sulfite oxidase activity				0			UCEC - Uterine corpus endometrioid carcinoma (6;0.0471)|OV - Ovarian serous cystadenocarcinoma(18;0.119)			TACATCCAGGGGGGCCTTCAA	0.567													47	60					0	0	0.014410	0	0
TIMELESS	8914	broad.mit.edu	37	12	56822793	56822793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:56822793G>A	uc001slf.2	-	11	1346	c.1178C>T	c.(1177-1179)TCC>TTC	p.S393F	TIMELESS_uc001slg.2_Missense_Mutation_p.S392F	NM_003920	NP_003911	Q9UNS1	TIM_HUMAN	timeless homolog	393					cell division|circadian rhythm|detection of abiotic stimulus|mitosis|morphogenesis of an epithelium|negative regulation of transcription, DNA-dependent|regulation of S phase|response to DNA damage stimulus|transcription, DNA-dependent	nuclear chromatin				ovary(5)|breast(2)|pancreas(1)	8						TGGCCGGAAGGAGGCAGCTCG	0.522													27	34					0	0	0.005443	0	0
ZBTB39	9880	broad.mit.edu	37	12	57397508	57397508	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:57397508G>A	uc001sml.1	-	2	1280	c.1194C>T	c.(1192-1194)TTC>TTT	p.F398F	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	398					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						AGGAGAAAAGGAAAATACCAA	0.512													29	35					0	0	0.007291	0	0
MYO1A	4640	broad.mit.edu	37	12	57424938	57424938	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:57424938C>T	uc001smw.3	-	23	2613	c.2370G>A	c.(2368-2370)GGG>GGA	p.G790G	MYO1A_uc010sqz.1_Silent_p.G628G|MYO1A_uc009zpd.2_Silent_p.G790G	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	790					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						TGTTCTTCAGCCCCAGTAGGA	0.527													35	57					0	0	0.004289	0	0
DDIT3	1649	broad.mit.edu	37	12	57911162	57911162	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:57911162A>C	uc001soi.2	-	3	208	c.28T>G	c.(28-30)TTC>GTC	p.F10V	MARS_uc001sof.1_RNA|DDIT3_uc009zps.2_Missense_Mutation_p.F33V|DDIT3_uc009zpt.2_Missense_Mutation_p.F33V	NM_004083	NP_004074	P35638	DDIT3_HUMAN	DNA-damage-inducible transcript 3	10				FGTLS -> SDTV (in Ref. 1; AAB22646).	cell cycle arrest|cell redox homeostasis|mRNA transcription from RNA polymerase II promoter|negative regulation of determination of dorsal identity|regulation of DNA-dependent transcription in response to stress|response to DNA damage stimulus	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription factor binding		FUS/DDIT3(623)|EWSR1/DDIT3(43)	soft_tissue(666)|large_intestine(1)|central_nervous_system(1)|lung(1)|skin(1)|ovary(1)	671						AGTGTCCCGAAGGAGAAAGGC	0.527			T	FUS	liposarcoma								22	36					0	0	0.012319	0	0
Unknown	0	broad.mit.edu	37	12	63359216	63359216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:63359216G>A	uc001srn.1	+	1	117	c.112G>A	c.(112-114)GTC>ATC	p.V38I						SubName: Full=Putative uncharacterized protein RPL14P1;																		CAGGGCTTTGGTCGATGGACC	0.527													26	33					0	0	0.005443	0	0
CAND1	55832	broad.mit.edu	37	12	67691613	67691613	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:67691613C>T	uc001stn.2	+	6	1271	c.834C>T	c.(832-834)GCC>GCT	p.A278A	CAND1_uc001sto.2_5'Flank	NM_018448	NP_060918	Q86VP6	CAND1_HUMAN	TIP120 protein	278	HEAT 7.				cell differentiation|negative regulation of catalytic activity|protein ubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|ubiquitin ligase complex	protein binding			central_nervous_system(1)|skin(1)	2			GBM - Glioblastoma multiforme(1;1.13e-10)|Lung(24;0.000342)|LUSC - Lung squamous cell carcinoma(43;0.196)	GBM - Glioblastoma multiforme(28;0.0279)		GTATTCAAGCCTTTGAATCAT	0.303													14	23					0	0	0.003163	0	0
TSPAN8	7103	broad.mit.edu	37	12	71531774	71531774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:71531774C>T	uc009zrt.1	-	5	565	c.403G>A	c.(403-405)GAA>AAA	p.E135K	TSPAN8_uc001swk.1_Missense_Mutation_p.E135K|TSPAN8_uc001swj.1_Missense_Mutation_p.E135K	NM_004616	NP_004607	P19075	TSN8_HUMAN	transmembrane 4 superfamily member 3	135	Extracellular (Potential).				protein glycosylation	integral to membrane|lysosome	signal transducer activity			skin(2)|lung(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(43;0.24)|OV - Ovarian serous cystadenocarcinoma(12;0.244)			AATTGTTTTTCACTTTCCCCT	0.338													176	251					0	0	0.014410	0	0
ZFC3H1	196441	broad.mit.edu	37	12	72017247	72017247	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:72017247G>C	uc001swo.2	-	24	4996	c.4637C>G	c.(4636-4638)TCT>TGT	p.S1546C		NM_144982	NP_659419	O60293	ZC3H1_HUMAN	proline/serine-rich coiled-coil 2	1546					RNA processing	intracellular	metal ion binding			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5						ATTATCATTAGATGGATCATA	0.353													14	28					0	0	0.003163	0	0
TRHDE	29953	broad.mit.edu	37	12	72956810	72956810	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:72956810C>T	uc001sxa.2	+	9	1927	c.1897C>T	c.(1897-1899)CAG>TAG	p.Q633*		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	633	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ACTTAAACTTCAGAATAACAG	0.274													47	50					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	12	80761448	80761448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:80761448G>A	uc009zsg.1	+	8	653	c.52G>A	c.(52-54)GAA>AAA	p.E18K	uc001szd.2_Missense_Mutation_p.E157K					RecName: Full=Uncharacterized protein C12orf64;																		GTGTCTGGAAGAAAAAGATAA	0.333													8	5					0	0	0.004482	0	0
MYF6	4618	broad.mit.edu	37	12	81101504	81101504	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:81101504G>A	uc001szf.1	+	1	59	c.6G>A	c.(4-6)ATG>ATA	p.M2I		NM_002469	NP_002460	P23409	MYF6_HUMAN	myogenic factor 6	2					muscle cell fate commitment|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						AGAACATGATGATGGACCTTT	0.463													36	41					0	0	0.005524	0	0
KITLG	4254	broad.mit.edu	37	12	88912537	88912537	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:88912537G>A	uc001tav.2	-	4	483	c.300C>T	c.(298-300)ATC>ATT	p.I100I	KITLG_uc009zsn.2_Silent_p.I28I|KITLG_uc001taw.2_Silent_p.I100I|KITLG_uc009zso.1_Intron	NM_000899	NP_000890	P21583	SCF_HUMAN	KIT ligand isoform b precursor	100	Extracellular (Potential).				cell adhesion|cell proliferation|hemopoiesis|male gonad development|positive regulation of DNA replication|signal transduction	cytoplasm|cytoskeleton|integral to membrane|plasma membrane	growth factor activity|identical protein binding|stem cell factor receptor binding			ovary(1)	1						GTTTGTCTATGATGGAATAAT	0.363									Testicular_Cancer_Familial_Clustering_of				24	34					0	0	0.004656	0	0
BTG1	694	broad.mit.edu	37	12	92539259	92539259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:92539259G>A	uc001tby.3	-	1	415	c.53C>T	c.(52-54)GCC>GTC	p.A18V	BTG1_uc001tbv.1_5'Flank|BTG1_uc001tbw.1_5'Flank|BTG1_uc001tbx.1_5'Flank|BTG1_uc009zss.1_5'Flank|uc001tca.2_5'Flank	NM_001731	NP_001722	P62324	BTG1_HUMAN	B-cell translocation protein 1	18					cell migration|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of angiogenesis|positive regulation of endothelial cell differentiation|positive regulation of myoblast differentiation|regulation of apoptosis|regulation of transcription, DNA-dependent	cytoplasm|nucleus	kinase binding|transcription cofactor activity				0		Acute lymphoblastic leukemia(6;3.02e-13)|all_hematologic(6;4.32e-09)				GAAGGACACGGCGGCGGCGAT	0.483			T	MYC	BCLL								41	51					0	0	0.011902	0	0
C12orf63	374467	broad.mit.edu	37	12	97082754	97082754	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:97082754C>T	uc001tet.1	+	10	1428	c.1350C>T	c.(1348-1350)CTC>CTT	p.L450L		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	450										skin(6)|ovary(1)	7						CTGCGTTACTCTTTCAGGTAA	0.284													22	36					0	0	0.002780	0	0
ANKS1B	56899	broad.mit.edu	37	12	99145141	99145141	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:99145141T>A	uc001tge.1	-	25	4081	c.3664A>T	c.(3664-3666)AAG>TAG	p.K1222*	ANKS1B_uc001tgf.1_Nonsense_Mutation_p.K738*|ANKS1B_uc001tgk.2_Nonsense_Mutation_p.K519*|ANKS1B_uc010svd.1_Nonsense_Mutation_p.K228*|ANKS1B_uc001tgd.1_Nonsense_Mutation_p.K388*|ANKS1B_uc009ztq.2_Nonsense_Mutation_p.K124*|ANKS1B_uc010sve.1_Nonsense_Mutation_p.K252*|ANKS1B_uc001tgh.3_Nonsense_Mutation_p.K228*|ANKS1B_uc001tgi.2_Nonsense_Mutation_p.K472*|ANKS1B_uc009ztr.2_Nonsense_Mutation_p.K412*|ANKS1B_uc001tgj.2_Nonsense_Mutation_p.K388*|ANKS1B_uc009ztp.2_Nonsense_Mutation_p.K253*|ANKS1B_uc010svf.1_Nonsense_Mutation_p.K252*|ANKS1B_uc001tgg.3_Nonsense_Mutation_p.K320*|ANKS1B_uc010svg.1_Nonsense_Mutation_p.K357*|ANKS1B_uc009zts.1_Nonsense_Mutation_p.K448*	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	1222						Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		ACCACGGACTTGCGAATGCTA	0.498													20	26					0	0	0.012319	0	0
ANKS1B	56899	broad.mit.edu	37	12	99548138	99548138	+	Silent	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:99548138A>G	uc001tge.1	-	15	2872	c.2455T>C	c.(2455-2457)TTG>CTG	p.L819L	ANKS1B_uc001tgf.1_Silent_p.L395L|ANKS1B_uc001tgk.2_Silent_p.L116L|ANKS1B_uc001tgd.1_Silent_p.L45L|ANKS1B_uc001tgi.2_Silent_p.L45L|ANKS1B_uc009ztr.2_Silent_p.L45L|ANKS1B_uc001tgj.2_Silent_p.L45L|ANKS1B_uc001tgg.3_5'UTR|ANKS1B_uc010svg.1_Silent_p.L14L|ANKS1B_uc009zts.1_Silent_p.L45L|ANKS1B_uc001tgm.1_Silent_p.L45L	NM_152788	NP_690001	Q7Z6G8	ANS1B_HUMAN	cajalin 2 isoform a	819	SAM 1.					Cajal body|cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane					0		all_cancers(3;0.0197)|all_epithelial(3;0.0101)|Esophageal squamous(3;0.0559)|Breast(359;0.209)		OV - Ovarian serous cystadenocarcinoma(2;2.89e-08)|Epithelial(2;6.12e-08)|all cancers(2;4.07e-06)		ATGCTTTCCAACCATTGTCCC	0.512													25	34					0	0	0.003330	0	0
ANO4	121601	broad.mit.edu	37	12	101477456	101477456	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:101477456G>A	uc010svm.1	+	16	1968	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K	ANO4_uc001thw.2_Missense_Mutation_p.E431K|ANO4_uc001thx.2_Missense_Mutation_p.E466K|ANO4_uc001thy.2_Intron	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	466	Extracellular (Potential).|Poly-Glu.					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						TGTCCTTTAGGAAGAAATACG	0.378										HNSCC(74;0.22)			26	43					0	0	0.005443	0	0
UTP20	27340	broad.mit.edu	37	12	101731947	101731947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:101731947G>A	uc001tia.1	+	30	3916	c.3760G>A	c.(3760-3762)GAC>AAC	p.D1254N		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1254					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						TATTGTAATGGACATAGTTGA	0.423													46	55					0	0	0.014410	0	0
STAB2	55576	broad.mit.edu	37	12	103984798	103984798	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:103984798C>T	uc001tjw.2	+	2	391	c.205C>T	c.(205-207)CGA>TGA	p.R69*		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	69	Extracellular (Potential).				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						TGTAGGGGTTCGAGATTGCAG	0.458													33	41					0	0	0.004878	0	0
STAB2	55576	broad.mit.edu	37	12	104140468	104140468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:104140468G>A	uc001tjw.2	+	58	6416	c.6230G>A	c.(6229-6231)GGA>GAA	p.G2077E	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2077	Extracellular (Potential).|EGF-like 15.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GAAGGTGACGGAATCACATGC	0.343													79	74					0	0	0.014410	0	0
ATP2A2	488	broad.mit.edu	37	12	110719708	110719708	+	Silent	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:110719708C>A	uc001tqk.3	+	1	677	c.114C>A	c.(112-114)TCC>TCA	p.S38S	ATP2A2_uc001tql.3_Silent_p.S38S|ATP2A2_uc010sxy.1_Silent_p.S38S	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	38	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						GATGGGGCTCCAACGGTAGGT	0.677													7	11					8.12818e-05	8.47778e-05	0.001984	1	0
CUX2	23316	broad.mit.edu	37	12	111745042	111745042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:111745042G>A	uc001tsa.1	+	12	1243	c.1090G>A	c.(1090-1092)GAA>AAA	p.E364K		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	364	Potential.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						TGACTATGAGGAAATTAAAAC	0.552													24	32					0	0	0.006320	0	0
ACAD10	80724	broad.mit.edu	37	12	112182701	112182701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:112182701G>A	uc001tsq.2	+	13	2169	c.1969G>A	c.(1969-1971)GAG>AAG	p.E657K	ACAD10_uc001tsp.2_Missense_Mutation_p.E657K|ACAD10_uc009zvx.2_Missense_Mutation_p.E688K|ACAD10_uc001tss.1_RNA	NM_025247	NP_079523	Q6JQN1	ACD10_HUMAN	acyl-Coenzyme A dehydrogenase family, member 10	657							acyl-CoA dehydrogenase activity|flavin adenine dinucleotide binding|hydrolase activity|transferase activity, transferring phosphorus-containing groups			ovary(2)	2						TATCTCTCCAGAGAGCCTCTC	0.587													29	38					0	0	0.006320	0	0
DTX1	1840	broad.mit.edu	37	12	113515335	113515335	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:113515335T>G	uc001tuk.1	+	2	702	c.366T>G	c.(364-366)GAT>GAG	p.D122E		NM_004416	NP_004407	Q86Y01	DTX1_HUMAN	deltex homolog 1	122	WWE 2.				negative regulation of neuron differentiation|Notch signaling pathway|regulation of Notch signaling pathway|transcription from RNA polymerase II promoter	cytoplasm|nucleus	Notch binding|SH3 domain binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding			lung(2)|ovary(1)|central_nervous_system(1)	4						CGGCCTACGATATGGACATCT	0.622													4	57					0	0	0.003080	0	0
NOS1	4842	broad.mit.edu	37	12	117685243	117685243	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:117685243C>T	uc001twm.1	-	18	3419	c.2733G>A	c.(2731-2733)CTG>CTA	p.L911L		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	911	FMN (By similarity).|Flavodoxin-like.				multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	TCTCCCCTCCCAGTTCTTCCA	0.557													40	55					0	0	0.008740	0	0
KSR2	283455	broad.mit.edu	37	12	118199001	118199001	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:118199001G>A	uc001two.2	-	4	769	c.714C>T	c.(712-714)ATC>ATT	p.I238I		NM_173598	NP_775869	Q6VAB6	KSR2_HUMAN	kinase suppressor of ras 2	267	Pro-rich.				intracellular signal transduction	cytoplasm|membrane	ATP binding|metal ion binding|protein serine/threonine kinase activity			lung(10)|central_nervous_system(2)|stomach(1)|large_intestine(1)|breast(1)	15	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CGGTGGTGACGATGTTGGGGG	0.721													92	139					0	0	0.014410	0	0
MPHOSPH9	10198	broad.mit.edu	37	12	123687198	123687198	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:123687198G>A	uc001uel.2	-	6	1405	c.1298C>T	c.(1297-1299)TCC>TTC	p.S433F	MPHOSPH9_uc010tal.1_Intron|MPHOSPH9_uc010tam.1_RNA|MPHOSPH9_uc001uem.2_Intron	NM_022782	NP_073619	Q99550	MPP9_HUMAN	M-phase phosphoprotein 9	433					M phase of mitotic cell cycle	centriole|Golgi membrane					0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000182)|Epithelial(86;0.00046)|BRCA - Breast invasive adenocarcinoma(302;0.169)		ATCTTCCAAGGAAGTCAATGA	0.393													18	25					0	0	0.007413	0	0
TMEM132D	121256	broad.mit.edu	37	12	129559541	129559541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:129559541C>T	uc009zyl.1	-	9	2507	c.2179G>A	c.(2179-2181)GAT>AAT	p.D727N	TMEM132D_uc001uia.2_Missense_Mutation_p.D265N	NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	727	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TCTTTCCCATCGTAAATATCC	0.468													23	40					0	0	0.004656	0	0
RAN	5901	broad.mit.edu	37	12	131359257	131359257	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr12:131359257C>T	uc001uir.2	+	5	479	c.414C>T	c.(412-414)TTC>TTT	p.F138F	RAN_uc010tbk.1_Silent_p.F50F|RAN_uc010tbl.1_Silent_p.F50F|RAN_uc001uis.2_Silent_p.F158F	NM_006325	NP_006316	P62826	RAN_HUMAN	ras-related nuclear protein	138					androgen receptor signaling pathway|cell division|DNA metabolic process|mitosis|mitotic spindle organization|positive regulation of transcription, DNA-dependent|protein export from nucleus|RNA export from nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|melanosome|nuclear pore|nucleoplasm	androgen receptor binding|chromatin binding|GTP binding|GTPase activity|transcription coactivator activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	Lung NSC(355;7.46e-07)|all_epithelial(31;7.36e-06)		OV - Ovarian serous cystadenocarcinoma(86;9.18e-49)|Epithelial(86;1.42e-45)|all cancers(50;6.28e-40)		CCATTGTCTTCCACCGAAAGA	0.383													21	25					0	0	0.012319	0	0
TPTE2	93492	broad.mit.edu	37	13	19997285	19997285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:19997285C>T	uc001umd.2	-	21	1697	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.E385K|TPTE2_uc001ume.2_Missense_Mutation_p.E419K|TPTE2_uc009zzm.2_Missense_Mutation_p.E167K|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.E167K	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	496	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TTATCCAATTCATTTCTTGGT	0.368													13	27					0	0	0.013537	0	0
TPTE2	93492	broad.mit.edu	37	13	20038604	20038604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:20038604G>A	uc001umd.2	-	11	944	c.733C>T	c.(733-735)CCA>TCA	p.P245S	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.P134S|TPTE2_uc001ume.2_Missense_Mutation_p.P168S|TPTE2_uc009zzm.2_5'UTR|TPTE2_uc010tcm.1_RNA	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	245	Phosphatase tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		ACCTCAATTGGATTTCTATAG	0.323													27	18					0	0	0.010818	0	0
XPO4	64328	broad.mit.edu	37	13	21417979	21417979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:21417979G>A	uc001unq.3	-	5	539	c.503C>T	c.(502-504)TCA>TTA	p.S168L	XPO4_uc010tcr.1_Missense_Mutation_p.S94L	NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	168					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		ACTTGAACTTGAAAATTCACT	0.343													19	29					0	0	0.006122	0	0
PARP4	143	broad.mit.edu	37	13	25008897	25008897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:25008897G>A	uc001upl.2	-	31	4488	c.4382C>T	c.(4381-4383)CCT>CTT	p.P1461L		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1461					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		AAAATGAAAAGGAGAGGAAGC	0.517													5	20					0	0	0.000602	0	0
ATP12A	479	broad.mit.edu	37	13	25281489	25281489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:25281489C>T	uc001upp.2	+	17	2598	c.2411C>T	c.(2410-2412)CCC>CTC	p.P804L	ATP12A_uc010aaa.2_Missense_Mutation_p.P810L	NM_001676	NP_001667	P54707	AT12A_HUMAN	hydrogen/potassium-exchanging ATPase 12A	804	Helical; (Potential).				ATP biosynthetic process	hydrogen:potassium-exchanging ATPase complex	ATP binding|hydrogen:potassium-exchanging ATPase activity|metal ion binding			ovary(2)|central_nervous_system(2)|large_intestine(1)|breast(1)	6		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0307)|Epithelial(112;0.086)|OV - Ovarian serous cystadenocarcinoma(117;0.228)	Esomeprazole(DB00736)|Pantoprazole(DB00213)	GAGCTGTGCCCCTTTCTGATC	0.498													65	66					0	0	0.014410	0	0
ATP8A2	51761	broad.mit.edu	37	13	26116179	26116179	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:26116179G>A	uc001uqk.2	+	9	916	c.774G>A	c.(772-774)GGG>GGA	p.G258G	ATP8A2_uc010tdi.1_Silent_p.G218G|ATP8A2_uc010tdj.1_RNA|ATP8A2_uc001uql.1_Silent_p.G218G	NM_016529	NP_057613	Q9NTI2	AT8A2_HUMAN	ATPase, aminophospholipid transporter-like,	218	Cytoplasmic (Potential).				ATP biosynthetic process|negative regulation of cell proliferation	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|large_intestine(1)|skin(1)	4		Breast(139;0.0201)|Lung SC(185;0.0225)		all cancers(112;0.043)|OV - Ovarian serous cystadenocarcinoma(117;0.0748)|Epithelial(112;0.079)		ACTTAGATGGGAAAAGGTATT	0.363													11	32					0	0	0.013537	0	0
CDK8	1024	broad.mit.edu	37	13	26967593	26967593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:26967593C>T	uc001uqr.1	+	7	762	c.736C>T	c.(736-738)CCT>TCT	p.P246S	CDK8_uc001uqs.1_Missense_Mutation_p.P246S|CDK8_uc001uqt.1_Missense_Mutation_p.P73S	NM_001260	NP_001251	P49336	CDK8_HUMAN	cyclin-dependent kinase 8	246	Protein kinase.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	mediator complex	ATP binding|cyclin-dependent protein kinase activity|protein binding|RNA polymerase II carboxy-terminal domain kinase activity			lung(2)|large_intestine(1)|ovary(1)|skin(1)	5	Colorectal(5;0.000442)	Lung SC(185;0.0156)|Breast(139;0.147)		all cancers(112;0.0384)|Epithelial(112;0.142)|OV - Ovarian serous cystadenocarcinoma(117;0.188)		AACTAGTAATCCTTATCACCA	0.338													59	89					0	0	0.014410	0	0
MTUS2	23281	broad.mit.edu	37	13	29600557	29600557	+	Silent	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:29600557T>A	uc001usl.3	+	1	1810	c.1752T>A	c.(1750-1752)CCT>CCA	p.P584P		NM_001033602	NP_001028774	Q5JR59	MTUS2_HUMAN	hypothetical protein LOC23281 isoform a	574						cytoplasm|microtubule	microtubule binding|protein homodimerization activity				0						TTCCACCCCCTACTGATAGTG	0.537													33	54					0	0	0.012213	0	0
NBEA	26960	broad.mit.edu	37	13	36006489	36006489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:36006489C>T	uc001uvb.2	+	39	6469	c.6263C>T	c.(6262-6264)TCC>TTC	p.S2088F	NBEA_uc010abi.2_Missense_Mutation_p.S744F	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2088						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCATTTGGCTCCACTCATGCT	0.428													7	11					0	0	0.003080	0	0
NBEA	26960	broad.mit.edu	37	13	36046664	36046664	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:36046664C>T	uc001uvb.2	+	41	6782	c.6576C>T	c.(6574-6576)ATC>ATT	p.I2192I	NBEA_uc010abi.2_Silent_p.I848I|NBEA_uc010tee.1_5'UTR	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2192						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TCAAGAAGATCGACACGAAAG	0.478													20	22					0	0	0.010504	0	0
DGKH	160851	broad.mit.edu	37	13	42830421	42830421	+	RNA	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:42830421T>C	uc001uyp.2	+	32		c.4201T>C						Q86XP1	DGKH_HUMAN	Homo sapiens DGKH-1 mRNA for diacylglycerol kinase eta1, complete cds.						activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation|protein oligomerization	endosome|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(2)	2		Lung NSC(96;1.02e-05)|Prostate(109;0.0168)|Lung SC(185;0.0262)|Breast(139;0.0709)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;5.88e-05)|GBM - Glioblastoma multiforme(144;0.000935)|BRCA - Breast invasive adenocarcinoma(63;0.109)		ATGCTTCAGTTTCCTTTACAG	0.448													28	47					0	0	0.005443	0	0
LCP1	3936	broad.mit.edu	37	13	46721144	46721144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:46721144C>T	uc001vaz.3	-	10	1199	c.1073G>A	c.(1072-1074)GGG>GAG	p.G358E	LCP1_uc001vay.3_5'Flank|LCP1_uc001vba.3_Missense_Mutation_p.G358E	NM_002298	NP_002289	P13796	PLSL_HUMAN	L-plastin	358	CH 2.|Actin-binding 1.				regulation of intracellular protein transport|T cell activation involved in immune response	cell junction|cytosol|ruffle membrane	calcium ion binding			lung(4)|ovary(3)	7		Lung NSC(96;1.27e-05)|Breast(56;8.04e-05)|Prostate(109;0.00217)|Hepatocellular(98;0.0207)|Lung SC(185;0.0262)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;5.39e-05)		CTTGGGGTTCCCTCGGACAAC	0.542			T	BCL6	NHL 								38	44					0	0	0.004878	0	0
LOC220429	220429	broad.mit.edu	37	13	50466990	50466990	+	Missense_Mutation	SNP	T	C	C	rs144184696	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:50466990T>C	uc001vdk.2	+	1	2446	c.2264T>C	c.(2263-2265)CTG>CCG	p.L755P		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GTCTGTCCACTGAGGGGTTTT	0.517													5	52					0	0	0.001984	0	0
MYCBP2	23077	broad.mit.edu	37	13	77641724	77641724	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:77641724G>A	uc001vkf.2	-	72	12424	c.12333C>T	c.(12331-12333)TTC>TTT	p.F4111F	MYCBP2_uc010aev.2_Silent_p.F3515F|MYCBP2_uc001vke.2_Silent_p.F728F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4111					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		ACCTGGAATTGAAAATCATCG	0.388													56	69					0	0	0.014410	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455537	84455537	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:84455537C>A	uc001vlk.2	-	1	992	c.106G>T	c.(106-108)GGG>TGG	p.G36W		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	36	LRRNT.|Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGTAGGTCCCCTTCTATCTCA	0.468													31	40					5.91797e-21	6.30816e-21	0.012213	1	0
SLITRK5	26050	broad.mit.edu	37	13	88328984	88328984	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:88328984G>A	uc001vln.2	+	2	1560	c.1341G>A	c.(1339-1341)ATG>ATA	p.M447I	SLITRK5_uc010tic.1_Missense_Mutation_p.M206I	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	447	Extracellular (Potential).|LRR 8.					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					GCATCTCGATGATCCAGGACC	0.587													20	26					0	0	0.014323	0	0
GPC6	10082	broad.mit.edu	37	13	95055279	95055279	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:95055279C>T	uc001vlt.2	+	9	2108	c.1476C>T	c.(1474-1476)TCC>TCT	p.S492S		NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	492						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				GTGATGAATCCAGTGGCTCAG	0.398													74	98					0	0	0.014410	0	0
COL4A2	1284	broad.mit.edu	37	13	111109710	111109710	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr13:111109710G>A	uc001vqx.2	+	21	1649	c.1360G>A	c.(1360-1362)GGA>AGA	p.G454R		NM_001846	NP_001837	P08572	CO4A2_HUMAN	alpha 2 type IV collagen preproprotein	454	Triple-helical region.				angiogenesis|axon guidance|extracellular matrix organization|negative regulation of angiogenesis	collagen type IV	extracellular matrix structural constituent|protein binding			skin(3)|central_nervous_system(2)|ovary(1)	6	all_cancers(4;2.21e-12)|all_epithelial(4;2.63e-07)|all_lung(23;5.81e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00323)|all_neural(89;0.0565)|Lung SC(71;0.0753)|Medulloblastoma(90;0.0922)	Breast(118;0.212)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.151)			TGGGCTGAAAGGAGCAAAAGG	0.627													7	14					0	0	0.001984	0	0
OR4K13	390433	broad.mit.edu	37	14	20502796	20502796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:20502796C>T	uc010tkz.1	-	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		GAGCAGGTTTCCTAACACAAT	0.418													24	22					0	0	0.002780	0	0
OR11G2	390439	broad.mit.edu	37	14	20665716	20665716	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:20665716C>T	uc010tlb.1	+	1	222	c.222C>T	c.(220-222)CTC>CTT	p.L74L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	74	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		TTGTTTACCTCCTGACCCTCA	0.567													16	46					0	0	0.004990	0	0
RNASE9	390443	broad.mit.edu	37	14	21025022	21025022	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:21025022G>A	uc010aho.2	-	4	366	c.207C>T	c.(205-207)GTC>GTT	p.V69V	RNASE9_uc001vxq.3_Silent_p.V74V|RNASE9_uc010ahp.2_Silent_p.V74V|RNASE9_uc010ahq.2_Silent_p.V74V|RNASE9_uc010ahr.2_Silent_p.V74V|RNASE9_uc010ahs.2_Silent_p.V69V|RNASE9_uc010aht.2_Silent_p.V69V|RNASE9_uc010ahu.2_Silent_p.V69V	NM_001110357	NP_001103827	P60153	RNAS9_HUMAN	ribonuclease, RNase A family, 9 (non-active)	69						extracellular region	nucleic acid binding|pancreatic ribonuclease activity			ovary(2)	2	all_cancers(95;0.00238)		Epithelial(56;3.32e-06)|all cancers(55;2.46e-05)	GBM - Glioblastoma multiforme(265;0.0141)		GTTCAATAAGGACACGTCTTT	0.373													43	69					0	0	0.011902	0	0
OR5AU1	390445	broad.mit.edu	37	14	21623849	21623849	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:21623849G>A	uc010tlp.1	-	1	336	c.336C>T	c.(334-336)TCC>TCT	p.S112S		NM_001004731	NP_001004731	Q8NGC0	O5AU1_HUMAN	olfactory receptor, family 5, subfamily AU,	112	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(95;0.00238)		Epithelial(56;6.88e-07)|all cancers(55;6.02e-06)	GBM - Glioblastoma multiforme(265;0.0192)		TCTTCAGGAGGGAGTACATGG	0.542													24	31					0	0	0.002780	0	0
SUPT16H	11198	broad.mit.edu	37	14	21827667	21827667	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:21827667G>A	uc001wao.2	-	19	2616	c.2277C>T	c.(2275-2277)GAC>GAT	p.D759D	SUPT16H_uc001wan.2_5'Flank	NM_007192	NP_009123	Q9Y5B9	SP16H_HUMAN	chromatin-specific transcription elongation	759					DNA repair|DNA replication|nucleosome disassembly|positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	chromosome|nucleoplasm	GTP binding				0	all_cancers(95;0.00115)		Epithelial(56;1.62e-06)|all cancers(55;1.49e-05)	GBM - Glioblastoma multiforme(265;0.0159)		GGTCATCTCGGTCATGCATAT	0.463													29	49					0	0	0.007291	0	0
MYH7	4625	broad.mit.edu	37	14	23894992	23894993	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:23894992_23894993CC>TT	uc001wjx.2	-	20	2303_2304	c.2197_2198GG>AA	c.(2197-2199)GGA>AAA	p.G733K		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	733	Myosin head-like.		G -> E (in CMH1).		adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		AATGAACTGTCCCTCAGGGATG	0.545													31	50					0	0	0.004672	0	0
MYH7	4625	broad.mit.edu	37	14	23899827	23899827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:23899827G>A	uc001wjx.2	-	11	1047	c.941C>T	c.(940-942)TCC>TTC	p.S314F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	314	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CTCTCCTTGGGAGATGAATGC	0.567													17	27					0	0	0.012319	0	0
NOVA1	4857	broad.mit.edu	37	14	26917170	26917170	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:26917170C>T	uc001wpy.2	-	5	1837	c.1519G>A	c.(1519-1521)GGT>AGT	p.G507S	NOVA1_uc001wpz.2_Missense_Mutation_p.G483S|NOVA1_uc001wqa.2_Missense_Mutation_p.G385S	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	510					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GGCACTCAACCCACTTTCTGA	0.428													13	32					0	0	0.001855	0	0
HECTD1	25831	broad.mit.edu	37	14	31626487	31626487	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:31626487G>A	uc001wrc.1	-	11	2134	c.1645C>T	c.(1645-1647)CGA>TGA	p.R549*	HECTD1_uc001wrd.1_Nonsense_Mutation_p.R64*	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	549					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		ATCATTTTTCGAATTAGAGCA	0.308													27	38					0	0	0.004656	0	0
GPR137C	283554	broad.mit.edu	37	14	53100346	53100346	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:53100346C>T	uc001wzu.3	+	5	966	c.966C>T	c.(964-966)TTC>TTT	p.F322F	GPR137C_uc001wzt.3_Silent_p.F338F	NM_001099652	NP_001093122	Q8N3F9	G137C_HUMAN	G protein-coupled receptor 137C	322	Cytoplasmic (Potential).					integral to membrane					0	Breast(41;0.0716)					TACTGTTTTTCCGGGCACAGA	0.368													22	24					0	0	0.010504	0	0
ERO1L	30001	broad.mit.edu	37	14	53138399	53138399	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:53138399G>A	uc001wzv.2	-	6	683	c.457C>T	c.(457-459)CTT>TTT	p.L153F	ERO1L_uc001wzw.2_RNA|ERO1L_uc010aof.2_RNA	NM_014584	NP_055399	Q96HE7	ERO1A_HUMAN	ERO1-like precursor	153					chaperone mediated protein folding requiring cofactor|electron transport chain|protein thiol-disulfide exchange|response to temperature stimulus|transport	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome	disulfide oxidoreductase activity|flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor				0	Breast(41;0.226)					GTCCACTGAAGAACAGCCTTC	0.284													10	14					0	0	0.010729	0	0
C14orf105	55195	broad.mit.edu	37	14	57960231	57960231	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:57960231C>T	uc001xcy.2	-	1	346	c.203G>A	c.(202-204)TGG>TAG	p.W68*	C14orf105_uc010trl.1_Nonsense_Mutation_p.W68*|C14orf105_uc010trm.1_5'UTR|C14orf105_uc010trn.1_5'UTR|C14orf105_uc001xcz.2_Nonsense_Mutation_p.W68*|C14orf105_uc010aox.1_RNA|C14orf105_uc010aoy.1_5'UTR	NM_018168	NP_060638	Q9NVL8	CN105_HUMAN	hypothetical protein LOC55195	68											0						TCTTCCATACCAGTTTTCTTG	0.403													4	88					0	0	0.009096	0	0
DAAM1	23002	broad.mit.edu	37	14	59798092	59798092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:59798092C>T	uc001xdz.1	+	14	1851	c.1726C>T	c.(1726-1728)CCT>TCT	p.P576S	DAAM1_uc001xea.1_Missense_Mutation_p.P576S	NM_014992	NP_055807	Q9Y4D1	DAAM1_HUMAN	dishevelled-associated activator of	576	FH1.|Pro-rich.				actin cytoskeleton organization	cytoplasm|plasma membrane	actin binding|Rho GTPase binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.165)		tggccctcctcctcccccAGG	0.443													20	28					0	0	0.007413	0	0
SYT16	83851	broad.mit.edu	37	14	62536415	62536415	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:62536415G>A	uc001xfu.1	+	2	815	c.618G>A	c.(616-618)CAG>CAA	p.Q206Q	SYT16_uc010tsd.1_Silent_p.Q206Q	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	206										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		CCCGGTCCCAGAGTTTCCGTT	0.493													49	66					0	0	0.014410	0	0
SYT16	83851	broad.mit.edu	37	14	62551057	62551057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:62551057G>A	uc001xfu.1	+	5	1775	c.1578G>A	c.(1576-1578)ATG>ATA	p.M526I	SYT16_uc010tse.1_Missense_Mutation_p.M84I	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	526	C2 2.									central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		CTGTGGAAATGATCAAAGGCA	0.537													22	22					0	0	0.010504	0	0
SYNE2	23224	broad.mit.edu	37	14	64608751	64608751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:64608751C>T	uc001xgm.2	+	82	15481	c.15251C>T	c.(15250-15252)TCC>TTC	p.S5084F	SYNE2_uc001xgl.2_Missense_Mutation_p.S5084F|SYNE2_uc010apy.2_Missense_Mutation_p.S1469F|SYNE2_uc001xgn.2_Missense_Mutation_p.S46F|SYNE2_uc001xgo.2_RNA	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	5084	Spectrin 2.|Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		GATGAAGACTCCGTGCATTCA	0.388													12	10					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	14	66480358	66480358	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:66480358G>A	uc001xit.2	-	1	275	c.150C>T	c.(148-150)GTC>GTT	p.V50V						SubName: Full=Nuclease sensitive element binding protein-1;																		TCGTTGCGATGACCTTTTTGT	0.542													11	4					0	0	0.010729	0	0
RAD51L1	5890	broad.mit.edu	37	14	68934942	68934942	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:68934942C>T	uc001xkf.1	+	10	1075	c.1011C>T	c.(1009-1011)ATC>ATT	p.I337I	RAD51L1_uc001xkd.2_Silent_p.I337I|RAD51L1_uc010aqr.2_Silent_p.I218I|RAD51L1_uc001xke.2_Silent_p.I337I|RAD51L1_uc010aqs.1_Silent_p.I337I|RAD51L1_uc001xkg.1_Silent_p.I337I	NM_133509	NP_598193	O15315	RA51B_HUMAN	RAD51-like 1 isoform 3	337					blood coagulation|DNA repair|reciprocal meiotic recombination	nucleoplasm	ATP binding|DNA binding|DNA-dependent ATPase activity				0				UCEC - Uterine corpus endometrioid carcinoma (185;0.163)|all cancers(60;3.9e-06)|OV - Ovarian serous cystadenocarcinoma(108;0.000103)|BRCA - Breast invasive adenocarcinoma(234;0.000421)		TCTACACCATCAAGGAGGAAG	0.438			T	HMGA2	lipoma|uterine leiomyoma			Direct_reversal_of_damage|Homologous_recombination					60	91					0	0	0.014410	0	0
PCNX	22990	broad.mit.edu	37	14	71444066	71444066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:71444066G>A	uc001xmo.2	+	6	1458	c.1012G>A	c.(1012-1014)GAA>AAA	p.E338K	PCNX_uc001xmn.3_Missense_Mutation_p.E338K|PCNX_uc010are.1_Missense_Mutation_p.E338K	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	338						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		TTTATCTGGGGAATTTCAGCT	0.423													29	36					0	0	0.008361	0	0
RBM25	58517	broad.mit.edu	37	14	73580994	73580994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:73580994G>A	uc001xno.2	+	18	2600	c.2392G>A	c.(2392-2394)GTT>ATT	p.V798I	RBM25_uc010ttu.1_Missense_Mutation_p.V798I|RBM25_uc001xnp.2_Missense_Mutation_p.V593I	NM_021239	NP_067062	P49756	RBM25_HUMAN	RNA binding motif protein 25	798	PWI.				apoptosis|mRNA processing|regulation of alternative nuclear mRNA splicing, via spliceosome|RNA splicing	cytoplasm|nuclear speck	mRNA binding|nucleotide binding|protein binding			central_nervous_system(2)|ovary(1)|breast(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00362)|OV - Ovarian serous cystadenocarcinoma(108;0.0688)		TCTCTTTTAGGTTATGGCTCA	0.244													11	24					0	0	0.001855	0	0
PAPLN	89932	broad.mit.edu	37	14	73725746	73725746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:73725746C>T	uc010ttx.1	+	14	1850	c.1687C>T	c.(1687-1689)CCT>TCT	p.P563S	PAPLN_uc001xnw.3_Missense_Mutation_p.P536S|PAPLN_uc010arl.2_RNA|PAPLN_uc010ttw.1_RNA|PAPLN_uc010tty.1_Missense_Mutation_p.P563S|PAPLN_uc010arm.2_5'Flank	NM_173462	NP_775733	O95428	PPN_HUMAN	papilin	563						proteinaceous extracellular matrix	metalloendopeptidase activity|serine-type endopeptidase inhibitor activity|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.00394)|OV - Ovarian serous cystadenocarcinoma(108;0.0468)		GCCGTTGGGCCCTCAGGAGTC	0.647													18	19					0	0	0.006122	0	0
C14orf166B	145497	broad.mit.edu	37	14	77294698	77294698	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:77294698C>T	uc001xsx.2	+	2	267	c.153C>T	c.(151-153)TCC>TCT	p.S51S	C14orf166B_uc010asn.1_5'UTR|C14orf166B_uc001xsw.2_RNA|C14orf166B_uc010aso.1_RNA|C14orf166B_uc010tvg.1_RNA|C14orf166B_uc010tvh.1_5'Flank	NM_194287	NP_919263	Q0VAA2	CN16B_HUMAN	hypothetical protein LOC145497	51											0			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0306)		AGGCCGAATCCCCGCCGACTG	0.502													29	29					0	0	0.008361	0	0
MIR1260	100302236	broad.mit.edu	37	14	77732563	77732563	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:77732563C>T	hsa-mir-1260|MI0006394	+			c.3C>T			NGB_uc001xtg.1_3'UTR																	0						ACCTCCATACCTTTCCAGCTC	0.562													27	34					0	0	0.010818	0	0
CATSPERB	79820	broad.mit.edu	37	14	92055895	92055895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:92055895C>T	uc001xzs.1	-	24	3079	c.2939G>A	c.(2938-2940)AGG>AAG	p.R980K	CATSPERB_uc010aub.1_Missense_Mutation_p.R502K	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	980					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CCAGTTGTGCCTCATGTTCAC	0.368													18	30					0	0	0.012319	0	0
KIAA1409	57578	broad.mit.edu	37	14	94088518	94088518	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:94088518G>A	uc001ybv.1	+	28	4557	c.4474G>A	c.(4474-4476)GAA>AAA	p.E1492K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E1470K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1647						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CGAGAGTGACGAAGAAGAGGA	0.552													37	43					0	0	0.003271	0	0
SERPINA6	866	broad.mit.edu	37	14	94780716	94780716	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:94780716G>A	uc001ycv.2	-	2	374	c.270C>T	c.(268-270)CTC>CTT	p.L90L	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	90					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	CCAGGCCCTGGAGAAGCTGGG	0.547													12	17					0	0	0.001855	0	0
SERPINA3	12	broad.mit.edu	37	14	95081325	95081325	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:95081325T>A	uc001ydp.2	+	2	626	c.547T>A	c.(547-549)TAC>AAC	p.Y183N	SERPINA3_uc001ydo.3_Missense_Mutation_p.Y208N|SERPINA3_uc010avf.1_RNA|SERPINA3_uc001ydr.2_RNA|SERPINA3_uc001ydq.2_Missense_Mutation_p.Y183N|SERPINA3_uc001yds.2_Missense_Mutation_p.Y183N|SERPINA3_uc010avg.2_Missense_Mutation_p.Y183N	NM_001085	NP_001076	P01011	AACT_HUMAN	serpin peptidase inhibitor, clade A, member 3	183					acute-phase response|maintenance of gastrointestinal epithelium|regulation of lipid metabolic process|regulation of proteolysis	extracellular region|nucleus	DNA binding|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)|large_intestine(1)|skin(1)	6		all_cancers(154;0.0525)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.212)|Epithelial(152;0.228)		CATCAACGACTACGTGAAGAA	0.493													36	51					0	0	0.003271	0	0
BCL11B	64919	broad.mit.edu	37	14	99641844	99641844	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:99641844G>A	uc001yga.2	-	4	1596	c.1329C>T	c.(1327-1329)ATC>ATT	p.I443I	BCL11B_uc001ygb.2_Silent_p.I372I	NM_138576	NP_612808	Q9C0K0	BC11B_HUMAN	B-cell CLL/lymphoma 11B isoform 1	443	C2H2-type 2.					nucleus	zinc ion binding			central_nervous_system(8)|large_intestine(1)|lung(1)	10		Melanoma(154;0.0866)|all_epithelial(191;0.241)		COAD - Colon adenocarcinoma(157;0.103)		GCCGGTGCACGATGAGATTGC	0.662			T	TLX3	T-ALL								20	29					0	0	0.007413	0	0
ZNF839	55778	broad.mit.edu	37	14	102793131	102793131	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:102793131C>T	uc001ylo.2	+	2	1100	c.750C>T	c.(748-750)AGC>AGT	p.S250S	ZNF839_uc010awk.1_Silent_p.S366S|ZNF839_uc001ylp.2_RNA|ZNF839_uc001ylq.1_Silent_p.S250S|ZNF839_uc001ylr.2_Silent_p.S250S	NM_018335	NP_060805	A8K0R7	ZN839_HUMAN	zinc finger protein 839	250						intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)	2						GGACGCTCAGCCTGACCTCCC	0.637													12	4					0	0	0.013537	0	0
TMEM179	388021	broad.mit.edu	37	14	105061533	105061533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:105061533G>A	uc001yox.1	-	3	510	c.491C>T	c.(490-492)TCC>TTC	p.S164F		NM_207379	NP_997262	Q6ZVK1	T179A_HUMAN	transmembrane protein 179	164						integral to membrane					0			all cancers(16;0.00276)|OV - Ovarian serous cystadenocarcinoma(23;0.0262)|Epithelial(46;0.058)|GBM - Glioblastoma multiforme(11;0.116)	Epithelial(152;0.129)		GTAGAAGGCGGAGTTGTCCAC	0.582													29	39					0	0	0.010818	0	0
AHNAK2	113146	broad.mit.edu	37	14	105406625	105406625	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:105406625C>A	uc010axc.1	-	7	15283	c.15163G>T	c.(15163-15165)GGG>TGG	p.G5055W	AHNAK2_uc001ypx.2_Missense_Mutation_p.G4955W	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	5055						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			AAGCTACCCCCTGCTGTGGCA	0.542													38	80					1.67305e-13	1.77039e-13	0.006230	1	0
AHNAK2	113146	broad.mit.edu	37	14	105416205	105416206	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:105416205_105416206GG>AA	uc010axc.1	-	7	5702_5703	c.5582_5583CC>TT	c.(5581-5583)TCC>TTT	p.S1861F	AHNAK2_uc001ypx.2_Missense_Mutation_p.S1761F	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1861						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCCCCTGCATGGAGGGGAGGCT	0.644													92	135					0	0	0.004672	0	0
AHNAK2	113146	broad.mit.edu	37	14	105418242	105418242	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:105418242G>A	uc010axc.1	-	7	3666	c.3546C>T	c.(3544-3546)ATC>ATT	p.I1182I	AHNAK2_uc001ypx.2_Silent_p.I1082I	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	1182						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			CCGAGGCCTCGATGGACTTGC	0.597													46	139					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106405597	106405597	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:106405597C>T	uc010tyt.1	-	2358		c.42467G>A								Parts of antibodies, mostly variable regions.												0						ACACTGACTTCCCCTCACTGT	0.582													33	44					0	0	0.003271	0	0
ADAM6	8755	broad.mit.edu	37	14	106757836	106757836	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:106757836C>T	uc010tyt.1	-	472		c.16229G>A								Parts of antibodies, mostly variable regions.												0						GCTGACGGATCCAGCTCACAC	0.547													12	37					0	0	0.013537	0	0
ADAM6	8755	broad.mit.edu	37	14	106877887	106877887	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:106877887C>T	uc010tyt.1	-	277		c.11212G>A			uc010tyu.1_Missense_Mutation_p.G22E					Parts of antibodies, mostly variable regions.												0						CTTCACCAGTCCTGGGCCCGA	0.607													25	29					0	0	0.004656	0	0
ADAM6	8755	broad.mit.edu	37	14	107062222	107062222	+	RNA	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:107062222C>T	uc010tyt.1	-	131		c.6373G>A								Parts of antibodies, mostly variable regions.												0						CATGGTGATTCGACTCTTGAG	0.567													37	59					0	0	0.003755	0	0
ADAM6	8755	broad.mit.edu	37	14	107083659	107083659	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:107083659G>A	uc010tyt.1	-	112		c.5215C>T								Parts of antibodies, mostly variable regions.												0						CTGCCACCAGGAGAAGGAAGA	0.502													13	32					0	0	0.001855	0	0
ADAM6	8755	broad.mit.edu	37	14	107211013	107211013	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr14:107211013G>A	uc010tyt.1	-	18		c.1328C>T								Parts of antibodies, mostly variable regions.												0						AATCATCTCTGGAGATGGTGA	0.517													27	39					0	0	0.006320	0	0
UBE3A	7337	broad.mit.edu	37	15	25616380	25616380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:25616380G>A	uc001zaq.2	-	4	950	c.950C>T	c.(949-951)CCC>CTC	p.P317L	uc001zae.2_Intron|UBE3A_uc001zar.2_Missense_Mutation_p.P294L|UBE3A_uc001zas.2_Missense_Mutation_p.P314L|UBE3A_uc001zat.2_Missense_Mutation_p.P294L	NM_000462	NP_000453	Q05086	UBE3A_HUMAN	ubiquitin protein ligase E3A isoform 2	317					brain development|interspecies interaction between organisms|protein K48-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus|proteasome complex	protein binding|ubiquitin-protein ligase activity			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		all_cancers(20;3.47e-21)|Breast(32;0.00123)		all cancers(64;2.78e-08)|Epithelial(43;8.85e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0155)|Lung(196;0.0616)		GGCTGCAAGGGGTAGCTTGCT	0.393													30	27					0	0	0.008361	0	0
ARHGAP11B	89839	broad.mit.edu	37	15	30938316	30938316	+	Splice_Site	SNP	G	A	A	rs112615235	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:30938316G>A	uc010azv.1	+	11		c.1127_splice	c.e11-1		ARHGAP11B_uc001zeu.2_Splice_Site			Q3KRB8	RHGBB_HUMAN	Homo sapiens cDNA, FLJ17072.						regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0		all_lung(180;2.71e-09)|Breast(32;0.00116)		all cancers(64;1.9e-15)|Epithelial(43;3.59e-12)|GBM - Glioblastoma multiforme(186;9e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00177)|Lung(196;0.153)		TTCCTTGGCAGTGGATAAGTT	0.393													3	39					0	0	0.004672	0	0
OTUD7A	161725	broad.mit.edu	37	15	31779660	31779660	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:31779660C>T	uc001zfq.2	-	9	1353	c.1260G>A	c.(1258-1260)CTG>CTA	p.L420L	OTUD7A_uc001zfr.2_Silent_p.L427L	NM_130901	NP_570971	Q8TE49	OTU7A_HUMAN	OTU domain containing 7A	420	Catalytic (By similarity).					cytoplasm|nucleus	cysteine-type peptidase activity|DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		all_lung(180;1.6e-09)		all cancers(64;2.44e-19)|Epithelial(43;6.82e-14)|GBM - Glioblastoma multiforme(186;1.49e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00189)|Lung(196;0.208)		CTTACTGGGCCAGCCGGGCGT	0.622													4	12					0	0	0.009096	0	0
MEIS2	4212	broad.mit.edu	37	15	37184640	37184640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:37184640C>T	uc001zjr.2	-	12	2205	c.1168G>A	c.(1168-1170)GAC>AAC	p.D390N	MEIS2_uc001zjl.2_3'UTR|MEIS2_uc010ucj.1_Missense_Mutation_p.D370N|MEIS2_uc001zjm.2_3'UTR|MEIS2_uc001zjn.2_3'UTR|MEIS2_uc001zjo.2_3'UTR|MEIS2_uc001zjp.2_3'UTR|MEIS2_uc001zjs.2_Missense_Mutation_p.D383N|MEIS2_uc001zju.2_3'UTR|MEIS2_uc001zjt.2_Missense_Mutation_p.D383N|MEIS2_uc001zjj.2_Missense_Mutation_p.D86N|MEIS2_uc001zjk.2_Missense_Mutation_p.D79N	NM_170675	NP_733775	O14770	MEIS2_HUMAN	Meis homeobox 2 isoform c	390					negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(2)	2		all_epithelial(112;9.77e-14)|Lung NSC(122;1.42e-09)|all_lung(180;2.2e-08)|Ovarian(310;0.134)|Melanoma(134;0.155)		all cancers(64;9.33e-21)|GBM - Glioblastoma multiforme(113;1.71e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0288)		GAAACGTAGTCCCCTGGCATG	0.443													85	128					0	0	0.014410	0	0
INO80	54617	broad.mit.edu	37	15	41372096	41372096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:41372096G>A	uc001zni.2	-	9	1147	c.934C>T	c.(934-936)CAC>TAC	p.H312Y	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	312	Assembles INO80 complex module consisting of conserved components ACTR8, ACTL6A and YY1.|DBINO.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						ATGCACTGGTGAGCAAGCTGA	0.527													57	89					0	0	0.014410	0	0
CHP	11261	broad.mit.edu	37	15	41562787	41562787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:41562787G>A	uc001znl.2	+	5	526	c.382G>A	c.(382-384)GAA>AAA	p.E128K		NM_007236	NP_009167	Q99653	CHP1_HUMAN	calcium binding protein P22	128	EF-hand 3.|1.				potassium ion transport|small GTPase mediated signal transduction		potassium channel regulator activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;5.87e-16)|Lung NSC(122;8.86e-12)|all_lung(180;2.47e-10)|Melanoma(134;0.0574)|Colorectal(260;0.0946)|Ovarian(310;0.143)		GBM - Glioblastoma multiforme(113;1.68e-06)|LUSC - Lung squamous cell carcinoma(244;0.008)|Lung(196;0.00802)|BRCA - Breast invasive adenocarcinoma(123;0.169)		GGATAAAGATGAAAAGATCTC	0.408													31	40					0	0	0.013726	0	0
MGA	23269	broad.mit.edu	37	15	42019410	42019410	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:42019410C>T	uc010ucy.1	+	10	3644	c.3463C>T	c.(3463-3465)CGA>TGA	p.R1155*	MGA_uc010ucz.1_Nonsense_Mutation_p.R1155*	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	1155						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		ACAGCCTGTTCGACATTACCC	0.408													18	16					0	0	0.007413	0	0
MGA	23269	broad.mit.edu	37	15	42041983	42041983	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:42041983C>T	uc010ucy.1	+	17	6359	c.6178C>T	c.(6178-6180)CAA>TAA	p.Q2060*	MGA_uc010ucz.1_Nonsense_Mutation_p.Q1851*|MGA_uc010uda.1_Nonsense_Mutation_p.Q676*|MGA_uc001zoi.2_Nonsense_Mutation_p.Q274*	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2021	Basic motif.					MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		ACATACAGATCAAGATTATAA	0.403													41	60					0	0	0.009718	0	0
TTBK2	146057	broad.mit.edu	37	15	43045282	43045283	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:43045282_43045283GG>AT	uc001zqo.2	-	14	2600_2601	c.2161_2162CC>AT	c.(2161-2163)CCT>ATT	p.P721I	TTBK2_uc010bcy.2_Missense_Mutation_p.P652I	NM_173500	NP_775771	Q6IQ55	TTBK2_HUMAN	tau tubulin kinase 2	721					cell death		ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|stomach(1)|pancreas(1)|skin(1)	7		all_cancers(109;6.11e-16)|all_epithelial(112;5.5e-14)|Lung NSC(122;1.76e-08)|all_lung(180;6.04e-08)|Melanoma(134;0.0179)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;3.23e-07)		TCCACTAGGAGGTTCACCCTCT	0.465													53	91					0	0	0.004672	0	0
DUOX2	50506	broad.mit.edu	37	15	45386440	45386440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:45386440G>A	uc010bea.2	-	34	4758	c.4555C>T	c.(4555-4557)CCT>TCT	p.P1519S	DUOX2_uc001zun.2_Missense_Mutation_p.P1519S	NM_014080	NP_054799	Q9NRD8	DUOX2_HUMAN	dual oxidase 2 precursor	1519	Cytoplasmic (Potential).				cuticle development|cytokine-mediated signaling pathway|hormone biosynthetic process|hydrogen peroxide catabolic process|response to cAMP|response to virus	apical plasma membrane|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|NAD(P)H oxidase activity|peroxidase activity			ovary(2)|skin(2)|pancreas(1)	5		all_cancers(109;3.79e-11)|all_epithelial(112;2.92e-09)|Lung NSC(122;3.55e-06)|all_lung(180;2.56e-05)|Melanoma(134;0.027)		all cancers(107;1.05e-18)|GBM - Glioblastoma multiforme(94;4.23e-07)|COAD - Colon adenocarcinoma(120;0.0668)|Colorectal(133;0.068)		ATTCCTGGAGGGCCGCAGCTG	0.567													18	34					0	0	0.007413	0	0
ATP8B4	79895	broad.mit.edu	37	15	50215660	50215660	+	Silent	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:50215660A>G	uc001zxu.2	-	17	1816	c.1674T>C	c.(1672-1674)TAT>TAC	p.Y558Y	ATP8B4_uc010ber.2_Silent_p.Y431Y|ATP8B4_uc010ufd.1_Silent_p.Y368Y|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	558	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		CTCCTTTGGAATAAAGCTTTA	0.378													13	20					0	0	0.002450	0	0
TLN2	83660	broad.mit.edu	37	15	63127947	63127947	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:63127947C>T	uc002alb.3	+	53	7140	c.7140C>T	c.(7138-7140)ATC>ATT	p.I2380I	TLN2_uc002alc.3_Silent_p.I773I|TLN2_uc010uic.1_5'UTR|uc002ale.1_5'Flank	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	2380	I/LWEQ.				cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TGGGCTCCATCCCTGCCAATG	0.597													60	98					0	0	0.014410	0	0
ZNF609	23060	broad.mit.edu	37	15	64967026	64967026	+	Missense_Mutation	SNP	C	T	T	rs142077559		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:64967026C>T	uc002ann.2	+	4	1973	c.1973C>T	c.(1972-1974)CCC>CTC	p.P658L		NM_015042	NP_055857	O15014	ZN609_HUMAN	zinc finger protein 609	658						nucleus	zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						TCAGCCCGTCCCATTGCCCCT	0.488													26	42					0	0	0.004656	0	0
PIF1	80119	broad.mit.edu	37	15	65116064	65116064	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:65116064C>T	uc002ant.2	-	2	537	c.471G>A	c.(469-471)GAG>GAA	p.E157E	PIF1_uc002anr.2_5'Flank|PIF1_uc002ans.2_5'Flank|PIF1_uc010uiq.1_Silent_p.E157E|PIF1_uc002anu.2_Silent_p.E157E	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	157					negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						TGAGCCGCCGCTCCTCGGGCT	0.756													11	20					0	0	0.010729	0	0
IGDCC3	9543	broad.mit.edu	37	15	65628235	65628235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:65628235G>A	uc002aos.2	-	3	721	c.469C>T	c.(469-471)CGC>TGC	p.R157C		NM_004884	NP_004875	Q8IVU1	IGDC3_HUMAN	putative neuronal cell adhesion molecule	157	Extracellular (Potential).|Ig-like C2-type 2.									ovary(3)	3						CACTGGAAGCGGGCCACACCA	0.592													40	46					0	0	0.007835	0	0
LRRC49	54839	broad.mit.edu	37	15	71256138	71256138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:71256138C>T	uc002asw.2	+	9	1035	c.788C>T	c.(787-789)TCC>TTC	p.S263F	LRRC49_uc002asu.2_Missense_Mutation_p.S253F|LRRC49_uc002asx.2_Missense_Mutation_p.S219F|LRRC49_uc010ukf.1_Missense_Mutation_p.S268F|LRRC49_uc002asy.2_5'UTR|LRRC49_uc002asz.2_Missense_Mutation_p.S235F	NM_017691	NP_060161	Q8IUZ0	LRC49_HUMAN	leucine rich repeat containing 49	263	LRR 7.					cytoplasm|microtubule				ovary(1)	1						GACAGTGTTTCCTGCCTTGCT	0.363													97	107					0	0	0.014410	0	0
PML	5371	broad.mit.edu	37	15	74290467	74290467	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:74290467G>A	uc002awv.2	+	2	392	c.252G>A	c.(250-252)TCG>TCA	p.S84S	PML_uc002awm.2_Silent_p.S84S|PML_uc002awl.2_Silent_p.S84S|PML_uc002awj.1_Silent_p.S84S|PML_uc002awk.2_Silent_p.S84S|PML_uc002awn.2_Silent_p.S84S|PML_uc002awo.2_Silent_p.S84S|PML_uc002awp.2_Silent_p.S84S|PML_uc002awq.2_Silent_p.S84S|PML_uc002awr.2_Silent_p.S84S|PML_uc002aws.2_Silent_p.S84S|PML_uc002awt.2_Silent_p.S84S|PML_uc002awu.2_Silent_p.S84S|PML_uc010ule.1_Intron|PML_uc002aww.1_5'UTR	NM_033238	NP_150241	P29590	PML_HUMAN	promyelocytic leukemia protein isoform 1	84	RING-type.				cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction resulting in induction of apoptosis|endoplasmic reticulum calcium ion homeostasis|induction of apoptosis|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|maintenance of protein location in nucleus|negative regulation of angiogenesis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of mitotic cell cycle|negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|negative regulation of telomerase activity|negative regulation of telomere maintenance via telomerase|negative regulation of transcription, DNA-dependent|negative regulation of translation in response to oxidative stress|PML body organization|PML body organization|positive regulation of defense response to virus by host|positive regulation of histone deacetylation|protein complex assembly|protein stabilization|protein targeting|regulation of calcium ion transport into cytosol|regulation of protein phosphorylation|response to hypoxia|response to virus|transcription, DNA-dependent	cytoplasm|cytosol|early endosome membrane|extrinsic to endoplasmic reticulum membrane|insoluble fraction|nuclear matrix|nuclear membrane|nucleolus|nucleus|PML body	cobalt ion binding|DNA binding|protein binding|protein binding|protein heterodimerization activity|protein homodimerization activity|SUMO binding|transcription coactivator activity|ubiquitin protein ligase binding|zinc ion binding|zinc ion binding			central_nervous_system(2)|kidney(2)|breast(1)	5						TGGAGGCGTCGGGCATGCAGT	0.642			T	RARA|PAX5	APL|ALL								27	26					0	0	0.006320	0	0
IDH3A	3419	broad.mit.edu	37	15	78453956	78453956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:78453956C>T	uc002bdd.2	+	5	350	c.323C>T	c.(322-324)CCA>CTA	p.P108L	IDH3A_uc010umt.1_Intron|IDH3A_uc010umu.1_5'UTR|IDH3A_uc002bde.2_Missense_Mutation_p.P58L|IDH3A_uc010umv.1_Missense_Mutation_p.P58L|IDH3A_uc002bdf.2_5'UTR|IDH3A_uc002bdg.2_Missense_Mutation_p.P21L	NM_005530	NP_005521	P50213	IDH3A_HUMAN	isocitrate dehydrogenase 3 (NAD+) alpha	108					carbohydrate metabolic process|tricarboxylic acid cycle	mitochondrial matrix	isocitrate dehydrogenase (NAD+) activity|magnesium ion binding|NAD binding				0					NADH(DB00157)	GCCGGTCACCCATCTATGAAT	0.453													18	43					0	0	0.007413	0	0
FAH	2184	broad.mit.edu	37	15	80473403	80473403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:80473403C>T	uc002bfj.2	+	14	1164	c.1082C>T	c.(1081-1083)TCC>TTC	p.S361F	FAH_uc002bfk.1_Missense_Mutation_p.S361F|FAH_uc002bfm.1_Missense_Mutation_p.S361F|FAH_uc002bfn.1_Missense_Mutation_p.S291F|FAH_uc010bln.1_RNA|FAH_uc010blo.1_RNA	NM_000137	NP_000128	P16930	FAAA_HUMAN	fumarylacetoacetase	361					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	fumarylacetoacetase activity|metal ion binding				0						AACTTCGGCTCCATGTTGGAA	0.502									Tyrosinemia_type_1				26	24					0	0	0.007291	0	0
GOLGA6L10	647042	broad.mit.edu	37	15	82635117	82635117	+	RNA	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:82635117T>C	uc002bgx.2	-	5		c.463A>G						A6NI86	GG6LA_HUMAN	Homo sapiens cDNA FLJ40113 fis, clone TESTI2008621.												0						TTTTTCAATTTCTTGACCCGC	0.383													6	15					0	0	0.001984	0	0
CPEB1	64506	broad.mit.edu	37	15	83226583	83226583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:83226583G>A	uc002bit.2	-	4	850	c.713C>T	c.(712-714)TCT>TTT	p.S238F	CPEB1_uc002biq.2_Missense_Mutation_p.S103F|CPEB1_uc002bir.2_Missense_Mutation_p.S103F|CPEB1_uc002bis.2_Missense_Mutation_p.S103F|CPEB1_uc010uod.1_Intron|CPEB1_uc010uoe.1_Missense_Mutation_p.S181F|CPEB1_uc002biu.2_Missense_Mutation_p.S205F|CPEB1_uc010uof.1_Missense_Mutation_p.S103F|CPEB1_uc002biv.2_Missense_Mutation_p.S178F|CPEB1_uc002bip.2_5'Flank	NM_001079533	NP_001073001	Q9BZB8	CPEB1_HUMAN	cytoplasmic polyadenylation element binding	178	Ser-rich.				mRNA processing|regulation of translation	cell junction|cytoplasmic mRNA processing body|dendrite|postsynaptic density|postsynaptic membrane	nucleotide binding|RNA binding			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(143;0.229)			GCTAGATCGAGAGTCCAGGAT	0.537													34	41					0	0	0.012213	0	0
UBE2Q2P1	388165	broad.mit.edu	37	15	85098251	85098251	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:85098251G>A	uc002bkn.1	-	2		c.1342C>T				NR_003661				Homo sapiens cDNA FLJ43276 fis, clone KIDNE2011532, moderately similar to Homo sapiens melanoma-associated chondroitin sulfate proteoglycan 4.												0						GCTTAGGAAGGTTATATAATC	0.378													4	7					0	0	0.009096	0	0
ALPK3	57538	broad.mit.edu	37	15	85370756	85370756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:85370756C>T	uc002ble.2	+	3	997	c.830C>T	c.(829-831)ACC>ATC	p.T277I		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	277					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			ACAGAGGAGACCCAGCCGCTA	0.552													20	31					0	0	0.007413	0	0
HAPLN3	145864	broad.mit.edu	37	15	89422255	89422255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:89422255G>A	uc002bnc.2	-	4	867	c.739C>T	c.(739-741)CCC>TCC	p.P247S	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Missense_Mutation_p.P309S	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	247	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					CGGTGGCGGGGGCCGTAGCTT	0.682											OREG0023445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	11					0	0	0.010729	0	0
MFGE8	4240	broad.mit.edu	37	15	89449929	89449929	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:89449929C>T	uc002bng.3	-	4	581	c.468G>A	c.(466-468)AAG>AAA	p.K156K	MFGE8_uc002bnf.3_Silent_p.K44K|MFGE8_uc002bnh.3_Silent_p.K156K|MFGE8_uc010bnn.2_Silent_p.K148K|MFGE8_uc010upq.1_Silent_p.K112K|MFGE8_uc010upr.1_Silent_p.K156K|MFGE8_uc010bno.2_Silent_p.K112K	NM_005928	NP_005919	Q08431	MFGM_HUMAN	milk fat globule-EGF factor 8 protein isoform a	156	F5/8 type C 1.				angiogenesis|cell adhesion|interspecies interaction between organisms|single fertilization					ovary(1)	1	Lung NSC(78;0.0392)|all_lung(78;0.077)					CCTTGAAGGCCTTCAGGTACT	0.537													34	33					0	0	0.004289	0	0
RCCD1	91433	broad.mit.edu	37	15	91504850	91504850	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:91504850A>C	uc002bqj.2	+	9	1262	c.982A>C	c.(982-984)AAA>CAA	p.K328Q	RCCD1_uc002bqk.2_Missense_Mutation_p.K328Q|RCCD1_uc002bql.2_Missense_Mutation_p.K326Q|RCCD1_uc010bob.2_Missense_Mutation_p.K117Q	NM_033544	NP_291022	A6NED2	RCCD1_HUMAN	RCC1 domain containing 1	328	RCC1 4.										0	Lung NSC(78;0.0987)|all_lung(78;0.175)		Lung(145;0.189)			CACTTTAGGTAAATATGGACA	0.527													4	337					0	0	0.009096	0	0
FAM169B	283777	broad.mit.edu	37	15	98995102	98995102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr15:98995102C>T	uc002buk.1	-	5	572	c.322G>A	c.(322-324)GAG>AAG	p.E108K		NM_182562	NP_872368	Q8N8A8	F169B_HUMAN	hypothetical protein LOC283777	108											0						CCCAGGGCCTCGTCCTCTGGG	0.557													14	19					0	0	0.003163	0	0
TPSD1	23430	broad.mit.edu	37	16	1306943	1306943	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:1306943C>T	uc002clb.1	+	3	409	c.400C>T	c.(400-402)CTG>TTG	p.L134L	TPSD1_uc010brm.1_Silent_p.L63L	NM_012217	NP_036349	Q9BZJ3	TRYD_HUMAN	tryptase delta 1 precursor	134	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity				0		Hepatocellular(780;0.00369)				CCTGCTGGAGCTGGAGGAGCC	0.652													18	15					0	0	0.007413	0	0
CRAMP1L	57585	broad.mit.edu	37	16	1719012	1719012	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:1719012C>T	uc010uvh.1	+	18	3345	c.3345C>T	c.(3343-3345)GTC>GTT	p.V1115V	CRAMP1L_uc002cmf.2_RNA	NM_020825	NP_065876	Q96RY5	CRML_HUMAN	Crm, cramped-like	1115	Ser-rich.					nucleus	DNA binding				0						GTGAAGGAGTCCCTCTTTCTC	0.592													17	11					0	0	0.006122	0	0
E4F1	1877	broad.mit.edu	37	16	2282530	2282530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:2282530C>T	uc002cpm.2	+	5	731	c.683C>T	c.(682-684)TCC>TTC	p.S228F	E4F1_uc010bsi.2_Missense_Mutation_p.S228F|E4F1_uc010bsj.2_Missense_Mutation_p.S228F	NM_004424	NP_004415	Q66K89	E4F1_HUMAN	p120E4F	228	C2H2-type 2.|Mediates dimerization, DNA-binding, transcription repression of CCNA2 and interaction with HMGA2.				cell division|cell proliferation|interspecies interaction between organisms|mitosis|regulation of growth	cytoplasm|nucleoplasm	DNA binding|ligase activity|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						TGTGGGGCCTCCTTCCGCACC	0.692													17	13					0	0	0.006122	0	0
ZNF205	7755	broad.mit.edu	37	16	3168912	3168912	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:3168912C>T	uc002cub.2	+	6	626	c.491C>T	c.(490-492)CCC>CTC	p.P164L	ZNF205_uc002cua.2_Missense_Mutation_p.P164L	NM_001042428	NP_001035893	O95201	ZN205_HUMAN	zinc finger protein 205	164	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding				0						GCAGGCTTTCCCTTCAGCAGG	0.642													62	63					0	0	0.014410	0	0
SRL	6345	broad.mit.edu	37	16	4242246	4242246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:4242246C>T	uc002cvz.3	-	6	1343	c.1330G>A	c.(1330-1332)GGT>AGT	p.G444S	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	903						sarcoplasmic reticulum lumen	GTP binding|GTPase activity			ovary(3)|skin(2)	5						CCGAGGCTACCCAGGAGGCCC	0.542													34	62					0	0	0.004289	0	0
SRL	6345	broad.mit.edu	37	16	4242767	4242768	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:4242767_4242768CC>TT	uc002cvz.3	-	6	821_822	c.808_809GG>AA	c.(808-810)GGG>AAG	p.G270K	SRL_uc002cvy.3_RNA	NM_001098814	NP_001092284	Q86TD4	SRCA_HUMAN	sarcalumenin	729						sarcoplasmic reticulum lumen	GTP binding|GTPase activity	p.G270R(1)		ovary(3)|skin(2)	5						GAAGAGGGCCCCGTAAACCCGC	0.554													42	47					0	0	0.004672	0	0
DNAJA3	9093	broad.mit.edu	37	16	4476020	4476020	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:4476020C>T	uc002cwk.2	+	1	163	c.138C>T	c.(136-138)CCC>CCT	p.P46P	DNAJA3_uc002cwl.2_Silent_p.P46P|DNAJA3_uc010uxk.1_Missense_Mutation_p.R10C	NM_005147	NP_005138	Q96EY1	DNJA3_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 3	46					activation of caspase activity|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of cell proliferation|negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein kinase activity|neuromuscular junction development|positive regulation of apoptosis|positive regulation of protein ubiquitination|protein folding|protein folding|protein stabilization|response to heat|response to interferon-gamma	cytosol|mitochondrial matrix|mitochondrial nucleoid|nucleus	ATP binding|heat shock protein binding|interferon-gamma receptor binding|metal ion binding|NF-kappaB binding|protein kinase binding			ovary(2)|breast(2)	4						TGAGCGTCCCCGCCTTTGCGT	0.677													7	6					0	0	0.003080	0	0
GRIN2A	2903	broad.mit.edu	37	16	10273906	10273906	+	Silent	SNP	G	A	A	rs145961628		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:10273906G>A	uc002czo.3	-	2	911	c.363C>T	c.(361-363)TTC>TTT	p.F121F	GRIN2A_uc010uym.1_Silent_p.F121F|GRIN2A_uc002czr.3_Silent_p.F121F|GRIN2A_uc010buk.2_Silent_p.F121F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	121	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGATGGGGACGAAGGTGTGGG	0.602													39	48					0	0	0.006999	0	0
LYRM1	57149	broad.mit.edu	37	16	20927004	20927004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:20927004G>A	uc010bwj.2	+	2	428	c.127G>A	c.(127-129)GAA>AAA	p.E43K	LYRM1_uc010bwi.1_RNA|LYRM1_uc010bwk.2_Intron|LYRM1_uc002dia.3_Missense_Mutation_p.E43K|LYRM1_uc010bwl.2_Missense_Mutation_p.E43K|LYRM1_uc010bwm.2_Intron|LYRM1_uc002dib.2_Missense_Mutation_p.E43K	NM_020424	NP_065157	O43325	LYRM1_HUMAN	LYR motif containing 1	43						nucleus					0						CATACTAAATGAAGCCAGAAC	0.438													20	45					0	0	0.008871	0	0
RRN3P1	730092	broad.mit.edu	37	16	21817457	21817457	+	Silent	SNP	G	A	A	rs150520281	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:21817457G>A	uc010vbl.1	-	7	603	c.106C>T	c.(106-108)CTG>TTG	p.L36L	uc002diq.3_Intron	NR_003370				SubName: Full=Putative uncharacterized protein ENSP00000219758;												0						CTTACATCCAGCTTGAGTAGT	0.254													3	24					0	0	0.000602	0	0
IL4R	3566	broad.mit.edu	37	16	27374340	27374340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:27374340G>A	uc002don.2	+	11	1909	c.1667G>A	c.(1666-1668)CGA>CAA	p.R556Q	IL4R_uc002dop.3_Missense_Mutation_p.R541Q|IL4R_uc010bxy.2_Missense_Mutation_p.R556Q|IL4R_uc002doo.2_Missense_Mutation_p.R396Q	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	556	Cytoplasmic (Potential).|Required for IRS1 activation and IL4- induced cell growth.				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						ATCCTCCGCCGAAATGTCCTC	0.637													21	17					0	0	0.010504	0	0
TAOK2	9344	broad.mit.edu	37	16	30002663	30002663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:30002663C>T	uc002dvc.1	+	19	3707	c.2924C>T	c.(2923-2925)CCC>CTC	p.P975L	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron	NM_004783	NP_004774	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						CTGCTGGCTCCCCCAGGCCCC	0.716													10	10					0	0	0.010729	0	0
ABCC12	94160	broad.mit.edu	37	16	48167670	48167670	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:48167670G>A	uc002efc.1	-	7	1402	c.1056C>T	c.(1054-1056)ATC>ATT	p.I352I	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Silent_p.I352I|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	352	ABC transmembrane type-1 1.|Helical; (Potential).					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TGGTGGACACGATGGGGGCCA	0.502													25	25					0	0	0.005443	0	0
SALL1	6299	broad.mit.edu	37	16	51174131	51174131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:51174131C>T	uc010vgs.1	-	2	2033	c.2002G>A	c.(2002-2004)GAG>AAG	p.E668K	SALL1_uc010vgr.1_Missense_Mutation_p.E571K|SALL1_uc010cbv.2_Intron	NM_002968	NP_002959	Q9NSC2	SALL1_HUMAN	sal-like 1 isoform a	668					adrenal gland development|branching involved in ureteric bud morphogenesis|embryonic digestive tract development|embryonic digit morphogenesis|gonad development|histone deacetylation|inductive cell-cell signaling|mesenchymal to epithelial transition involved in metanephros morphogenesis|negative regulation of transcription from RNA polymerase II promoter|olfactory bulb interneuron differentiation|olfactory bulb mitral cell layer development|olfactory nerve development|outer ear morphogenesis|pituitary gland development|positive regulation of transcription from RNA polymerase II promoter|positive regulation of Wnt receptor signaling pathway|ureteric bud invasion|ventricular septum development	chromocenter|cytoplasm|heterochromatin|nucleus	beta-catenin binding|DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(5)|ovary(3)	8		all_cancers(37;0.0322)	COAD - Colon adenocarcinoma(2;0.24)			TTGAACTGCTCGGACATGAGC	0.592													42	51					0	0	0.008740	0	0
CHD9	80205	broad.mit.edu	37	16	53279686	53279686	+	Silent	SNP	A	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:53279686A>T	uc002ehb.2	+	14	3542	c.3378A>T	c.(3376-3378)GGA>GGT	p.G1126G	CHD9_uc002egy.2_Silent_p.G1126G|CHD9_uc002eha.1_Silent_p.G1126G|CHD9_uc002ehc.2_Silent_p.G1126G|CHD9_uc002ehf.2_Silent_p.G240G|CHD9_uc002ehd.2_Silent_p.G652G|CHD9_uc002ehe.1_Silent_p.G240G	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	1126					cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				AAGGAGCAGGACAAACTAATG	0.323													23	18					0	0	0.014323	0	0
NLRC5	84166	broad.mit.edu	37	16	57100492	57100492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:57100492C>T	uc002ekk.1	+	34	4513	c.4288C>T	c.(4288-4290)CGC>TGC	p.R1430C	NLRC5_uc010ccr.1_RNA|NLRC5_uc010ccs.1_RNA|NLRC5_uc002eko.1_RNA|NLRC5_uc002ekq.1_5'UTR|NLRC5_uc002ekr.1_Missense_Mutation_p.R317C	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	1430					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GGAATTTCCTCGCCAGGAAGA	0.637													13	18					0	0	0.004007	0	0
ZNF319	57567	broad.mit.edu	37	16	58031661	58031661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:58031661G>A	uc002emx.1	-	2	1132	c.509C>T	c.(508-510)GCT>GTT	p.A170V		NM_020807	NP_065858	Q9P2F9	ZN319_HUMAN	zinc finger protein 319	170					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CGCTGCCTCAGCTGGCTTGTA	0.622													89	122					0	0	0.014410	0	0
CNOT1	23019	broad.mit.edu	37	16	58568274	58568274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:58568274G>A	uc002env.2	-	40	5965	c.5672C>T	c.(5671-5673)ACC>ATC	p.T1891I	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.T1886I|CNOT1_uc002ent.2_5'Flank|CNOT1_uc010vik.1_Missense_Mutation_p.T848I	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1891					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		GAGATCATCGGTCTTCAGTAT	0.398													11	10					0	0	0.010729	0	0
CNOT1	23019	broad.mit.edu	37	16	58585169	58585169	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:58585169A>T	uc002env.2	-	24	3502	c.3209T>A	c.(3208-3210)ATT>AAT	p.I1070N	CNOT1_uc002enw.2_RNA|CNOT1_uc002enu.3_Missense_Mutation_p.I1065N|CNOT1_uc002enx.2_Missense_Mutation_p.I1070N|CNOT1_uc002enz.1_Missense_Mutation_p.I499N|CNOT1_uc010vik.1_Missense_Mutation_p.I66N|SNORA46_uc002eny.1_5'Flank	NM_016284	NP_057368	A5YKK6	CNOT1_HUMAN	CCR4-NOT transcription complex, subunit 1	1070					nuclear-transcribed mRNA poly(A) tail shortening|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol				ovary(4)|central_nervous_system(2)	6				Kidney(780;0.0722)|OV - Ovarian serous cystadenocarcinoma(108;0.173)|Epithelial(162;0.239)		TGTAGTATTAATAGAAGGCTA	0.303													61	59					0	0	0.014410	0	0
CDH16	1014	broad.mit.edu	37	16	66948226	66948226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:66948226C>T	uc002eql.2	-	7	746	c.673G>A	c.(673-675)GCC>ACC	p.A225T	CDH16_uc010cdy.2_Missense_Mutation_p.A225T|CDH16_uc002eqm.2_Missense_Mutation_p.A128T	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	225	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		GTGGCAGTGGCCTGGTGGCCT	0.587													39	52					0	0	0.006999	0	0
CES3	23491	broad.mit.edu	37	16	67006373	67006373	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:67006373G>A	uc002eqt.2	+	11	1479	c.1406G>A	c.(1405-1407)GGA>GAA	p.G469E	CES3_uc010cdz.2_Missense_Mutation_p.G469E|CES3_uc010cea.2_RNA|CES3_uc010viw.1_Missense_Mutation_p.G108E	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	469						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		TTTGTGTTCGGAGGTCCCTTC	0.572													50	74					0	0	0.014410	0	0
CES3	23491	broad.mit.edu	37	16	67006383	67006383	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:67006383C>T	uc002eqt.2	+	11	1489	c.1416C>T	c.(1414-1416)TTC>TTT	p.F472F	CES3_uc010cdz.2_Silent_p.F472F|CES3_uc010cea.2_RNA|CES3_uc010viw.1_Silent_p.F111F	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	472						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		GAGGTCCCTTCCTCATGGACG	0.582													44	71					0	0	0.014410	0	0
RANBP10	57610	broad.mit.edu	37	16	67763685	67763685	+	Silent	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:67763685G>T	uc002eud.2	-	9	1161	c.1045C>A	c.(1045-1047)CGA>AGA	p.R349R	RANBP10_uc010ceo.2_Silent_p.R120R|RANBP10_uc010vju.1_Silent_p.R293R|RANBP10_uc010vjv.1_Silent_p.R232R|RANBP10_uc010vjw.1_Silent_p.R10R	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	349	Ser-rich.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		CTCAAACTTCGGACCTCACTG	0.602													63	70					2.60599e-31	2.79832e-31	0.014410	1	0
NOB1	28987	broad.mit.edu	37	16	69788587	69788587	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:69788587C>A	uc002exs.2	-	2	122	c.106G>T	c.(106-108)GAG>TAG	p.E36*		NM_014062	NP_054781	Q9ULX3	NOB1_HUMAN	nin one binding protein	36	PINc.					nucleus	metal ion binding|protein binding				0						TCCCGAATCTCAGTGACCACC	0.632													20	22					1.9806e-07	2.07508e-07	0.014323	1	0
HYDIN	54768	broad.mit.edu	37	16	71012907	71012907	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:71012907C>T	uc002ezr.2	-	30	4673	c.4545G>A	c.(4543-4545)AGG>AGA	p.R1515R		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1516										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTGTGTTTTTCCTGGCTTGAT	0.433													14	31					0	0	0.010504	0	0
HYDIN	54768	broad.mit.edu	37	16	71015379	71015379	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:71015379G>A	uc002ezr.2	-	29	4550	c.4422C>T	c.(4420-4422)ATC>ATT	p.I1474I		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1475										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CCAGGTGGGCGATCTGTATCT	0.478													32	61					0	0	0.011902	0	0
HYDIN	54768	broad.mit.edu	37	16	71025194	71025194	+	Splice_Site	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:71025194A>C	uc002ezr.2	-	25	4017	c.3889_splice	c.e25+1	p.E1297_splice		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a											ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGACCTGCCTACCCTCCCCAT	0.473													9	21					0	0	0.008291	0	0
PMFBP1	83449	broad.mit.edu	37	16	72164554	72164554	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:72164554C>T	uc002fcc.3	-	11	1702	c.1530G>A	c.(1528-1530)AGG>AGA	p.R510R	PMFBP1_uc002fcd.2_Silent_p.R505R|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Silent_p.R360R|PMFBP1_uc010cgo.1_5'Flank	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	510										ovary(2)	2		Ovarian(137;0.179)				TCTGCAGTTTCCTCTGGGTGT	0.567													19	31					0	0	0.007413	0	0
ZFHX3	463	broad.mit.edu	37	16	72828134	72828134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:72828134G>A	uc002fck.2	-	9	9120	c.8447C>T	c.(8446-8448)CCC>CTC	p.P2816L	ZFHX3_uc002fcl.2_Missense_Mutation_p.P1902L	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	2816					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				GGACATGGAGGGGCTTTCAAA	0.463													51	47					0	0	0.014410	0	0
BCAR1	9564	broad.mit.edu	37	16	75276498	75276498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:75276498G>A	uc002fdv.2	-	2	626	c.503C>T	c.(502-504)CCC>CTC	p.P168L	BCAR1_uc010cgu.2_Missense_Mutation_p.P139L|BCAR1_uc010vna.1_Missense_Mutation_p.P166L|BCAR1_uc010vnb.1_Missense_Mutation_p.P214L|BCAR1_uc002fdw.2_Missense_Mutation_p.P168L|BCAR1_uc010vnc.1_Intron|BCAR1_uc010vnd.1_Missense_Mutation_p.P186L|BCAR1_uc002fdx.2_Missense_Mutation_p.P186L	NM_014567	NP_055382	P56945	BCAR1_HUMAN	breast cancer anti-estrogen resistance 1	168	Substrate for kinases (By similarity).				actin filament organization|B cell receptor signaling pathway|blood coagulation|cell adhesion|cell division|cell migration|cell proliferation|epidermal growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|insulin receptor signaling pathway|integrin-mediated signaling pathway|nerve growth factor receptor signaling pathway|platelet-derived growth factor receptor signaling pathway|positive regulation of cell migration|regulation of apoptosis|regulation of cell growth|T cell receptor signaling pathway	cytosol|focal adhesion|membrane fraction|ruffle	protein kinase binding|protein phosphatase binding|SH3 domain binding|signal transducer activity			central_nervous_system(5)|breast(2)|prostate(1)	8				BRCA - Breast invasive adenocarcinoma(221;0.169)		AGGCCCTGGGGGCACCTGGTA	0.637													74	70					0	0	0.014410	0	0
MON1B	22879	broad.mit.edu	37	16	77232202	77232202	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:77232202C>T	uc002fez.2	+	6	1971	c.1641C>T	c.(1639-1641)CTC>CTT	p.L547L	MON1B_uc010vnf.1_Silent_p.L438L|MON1B_uc010vng.1_Silent_p.L401L|MON1B_uc002ffa.2_Silent_p.L427L|SYCE1L_uc010vnh.1_5'Flank	NM_014940	NP_055755	Q7L1V2	MON1B_HUMAN	MON1 homolog B	547							protein binding				0						TCACTGGACTCTGATAGTTGG	0.542													38	49					0	0	0.003755	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77359862	77359862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:77359862C>T	uc002ffc.3	-	13	2352	c.1933G>A	c.(1933-1935)GAA>AAA	p.E645K	ADAMTS18_uc010chc.1_Missense_Mutation_p.E233K|ADAMTS18_uc002ffe.1_Missense_Mutation_p.E341K	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	645	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						AAGCTATTTTCATTGCAAGGG	0.403													19	26					0	0	0.007413	0	0
LRRC50	123872	broad.mit.edu	37	16	84189324	84189324	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:84189324C>T	uc002fhl.3	+	5	892	c.711C>T	c.(709-711)ATC>ATT	p.I237I	LRRC50_uc010chi.1_RNA	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	237	LRR 6.				axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						ACCCGGAGATCCTGAGCATTC	0.418									Kartagener_syndrome				22	34					0	0	0.012319	0	0
KIAA0513	9764	broad.mit.edu	37	16	85100992	85100992	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:85100992G>A	uc002fiu.2	+	2	535	c.315G>A	c.(313-315)AAG>AAA	p.K105K	KIAA0513_uc002fis.3_Silent_p.K105K|KIAA0513_uc010voj.1_Silent_p.K105K|KIAA0513_uc002fit.2_Silent_p.K105K	NM_014732	NP_055547	O60268	K0513_HUMAN	hypothetical protein LOC9764	105						cytoplasm				breast(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.234)		ACGTGGAGAAGATCTTCTCTG	0.622													24	21					0	0	0.002780	0	0
FOXC2	2303	broad.mit.edu	37	16	86601502	86601503	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:86601502_86601503CC>TT	uc002fjq.2	+	1	646_647	c.561_562CC>TT	c.(559-564)CCCCCG>CCTTCG	p.P188S		NM_005251	NP_005242	Q99958	FOXC2_HUMAN	forkhead box C2	188					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|embryonic viscerocranium morphogenesis|insulin receptor signaling pathway|lymphangiogenesis|metanephros development|negative regulation of transcription from RNA polymerase II promoter|neural crest cell fate commitment|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of cell adhesion mediated by integrin|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of vascular wound healing|regulation of blood vessel size|regulation of organ growth|regulation of sequence-specific DNA binding transcription factor activity|somitogenesis|ureteric bud development|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding|transcription regulatory region DNA binding				0						AGGAGCCGCCCCCGGCGGCGTC	0.698									Late-onset_Hereditary_Lymphedema				14	20					0	0	0.004672	0	0
ACSF3	197322	broad.mit.edu	37	16	89199645	89199645	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr16:89199645C>T	uc002fmp.2	+	8	1681	c.1341C>T	c.(1339-1341)TTC>TTT	p.F447F	ACSF3_uc010cig.1_Silent_p.F447F|ACSF3_uc010cih.1_Silent_p.F182F|ACSF3_uc002fmq.1_RNA|ACSF3_uc010cii.1_RNA|ACSF3_uc002fmr.1_Silent_p.F182F	NM_174917	NP_777577	Q4G176	ACSF3_HUMAN	acyl-CoA synthetase family member 3 precursor	447					fatty acid metabolic process	mitochondrion	acid-thiol ligase activity|ATP binding				0				BRCA - Breast invasive adenocarcinoma(80;0.0281)		AGAGTGCATTCACCCTGGATG	0.557													24	27					0	0	0.014323	0	0
DPH1	1801	broad.mit.edu	37	17	1943100	1943100	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:1943100C>T	uc002fts.2	+	7	765	c.747C>T	c.(745-747)CCC>CCT	p.P249P	DPH1_uc002ftr.1_RNA|DPH1_uc002ftt.2_Silent_p.P233P|DPH1_uc010cjx.2_Silent_p.P109P|DPH1_uc010vqs.1_Silent_p.P259P|DPH1_uc002ftu.2_Silent_p.P5P|DPH1_uc002ftv.2_Silent_p.P5P|DPH1_uc002ftw.2_5'Flank|OVCA2_uc002ftx.2_5'Flank	NM_001383	NP_001374	Q9BZG8	DPH1_HUMAN	diptheria toxin resistance protein required for	249					peptidyl-diphthamide biosynthetic process from peptidyl-histidine|translation	cytoplasm|nucleus				pancreas(1)	1						TTGCCAACCCCAATGTCCCCG	0.592													57	77					0	0	0.014410	0	0
ASPA	443	broad.mit.edu	37	17	3397703	3397703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:3397703C>T	uc010ckg.2	+	6	785	c.694C>T	c.(694-696)CCC>TCC	p.P232S	SPATA22_uc010vrg.1_Intron|ASPA_uc002fvq.2_Missense_Mutation_p.P232S	NM_001128085	NP_001121557	P45381	ACY2_HUMAN	aspartoacylase	232					aspartate catabolic process	cytoplasm|nucleus	aminoacylase activity|aspartoacylase activity|hydrolase activity, acting on ester bonds|metal ion binding				0					L-Aspartic Acid(DB00128)	AGTTGATTACCCCCGGGATGA	0.313													85	114					0	0	0.014410	0	0
PELP1	27043	broad.mit.edu	37	17	4575893	4575893	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:4575893A>G	uc002fyi.3	-	16	2619	c.2393T>C	c.(2392-2394)CTG>CCG	p.L798P	PELP1_uc010vsf.1_Missense_Mutation_p.L651P	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	798	Pro-rich.				transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						TGGGGGTGGCAGGGGGGGAAG	0.612													4	29					0	0	0.008291	0	0
SLC13A5	284111	broad.mit.edu	37	17	6589655	6589655	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:6589655C>T	uc002gdj.2	-	12	1666	c.1578G>A	c.(1576-1578)GTG>GTA	p.V526V	SLC13A5_uc010vtf.1_Silent_p.V480V|SLC13A5_uc010clq.2_Silent_p.V483V|SLC13A5_uc002gdk.2_Silent_p.V509V	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	526						integral to membrane	citrate transmembrane transporter activity				0						CTCCTGTTTTCACCTGGAAAA	0.517													22	33					0	0	0.002780	0	0
ALOXE3	59344	broad.mit.edu	37	17	8006749	8006749	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:8006749G>A	uc010cnr.2	-	15	2218	c.1848C>T	c.(1846-1848)ACC>ACT	p.T616T	ALOXE3_uc002gka.2_Silent_p.T772T|ALOXE3_uc010vuo.1_Silent_p.T748T	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	616	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						TGGTCCCCTTGGTCTGGGGTG	0.572													41	36					0	0	0.006999	0	0
PIK3R6	146850	broad.mit.edu	37	17	8726794	8726794	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:8726794G>A	uc002glq.1	-	14	1776	c.1536C>T	c.(1534-1536)TCC>TCT	p.S512S	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	512					platelet activation	cytosol					0						CCACAGTCCGGGATGTGTCCA	0.522													7	4					0	0	0.003080	0	0
PIK3R6	146850	broad.mit.edu	37	17	8726803	8726803	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:8726803C>T	uc002glq.1	-	14	1767	c.1527G>A	c.(1525-1527)CTG>CTA	p.L509L	PIK3R6_uc002glr.1_RNA|PIK3R6_uc002gls.1_RNA	NM_001010855	NP_001010855	Q5UE93	PI3R6_HUMAN	phosphoinositide-3-kinase, regulatory subunit 6	509					platelet activation	cytosol					0						GGGATGTGTCCAGGGAAGGAG	0.532													6	9					0	0	0.001168	0	0
DHRS7C	201140	broad.mit.edu	37	17	9680581	9680581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:9680581G>A	uc010vvb.1	-	4	503	c.503C>T	c.(502-504)TCC>TTC	p.S168F	DHRS7C_uc010cof.2_Missense_Mutation_p.S167F	NM_001105571	NP_001099041	A6NNS2	DRS7C_HUMAN	dehydrogenase/reductase (SDR family) member 7C	168						extracellular region	binding|oxidoreductase activity				0						TGTTCTCCGGGAGATCATGTT	0.473													8	13					0	0	0.004482	0	0
MYH13	8735	broad.mit.edu	37	17	10263492	10263492	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:10263492C>T	uc002gmk.1	-	6	609	c.519G>A	c.(517-519)CAG>CAA	p.Q173Q		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	173	Myosin head-like.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						TGAGGATAGACTGGTTGTCTC	0.403													14	15					0	0	0.001855	0	0
MYH4	4622	broad.mit.edu	37	17	10353813	10353813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:10353813C>T	uc002gmn.2	-	30	4249	c.4138G>A	c.(4138-4140)GAG>AAG	p.E1380K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1380	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GCGTCCGTCTCGTACTTGGTC	0.557													49	90					0	0	0.014410	0	0
MYH1	4619	broad.mit.edu	37	17	10408543	10408543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:10408543C>T	uc002gmo.2	-	21	2466	c.2372G>A	c.(2371-2373)CGA>CAA	p.R791Q	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	791	IQ.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GGCCTGGGTTCGGGTAATCAG	0.458													21	32					0	0	0.012319	0	0
MYH2	4620	broad.mit.edu	37	17	10443353	10443353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:10443353C>T	uc010coi.2	-	12	1167	c.1039G>A	c.(1039-1041)GAA>AAA	p.E347K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E347K|MYH2_uc010coj.2_Missense_Mutation_p.E347K	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	347	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACCTTTTCTTCATTAGTAAAG	0.423													33	53					0	0	0.004878	0	0
MYH3	4621	broad.mit.edu	37	17	10533745	10533745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:10533745C>T	uc002gmq.1	-	36	5394	c.5317G>A	c.(5317-5319)GAG>AAG	p.E1773K		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,	1773	Potential.				muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						GTGTCCTGCTCCTTCTTCAGC	0.577													24	65					0	0	0.002780	0	0
DNAH9	1770	broad.mit.edu	37	17	11713572	11713572	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:11713572G>A	uc002gne.2	+	45	8661	c.8593G>A	c.(8593-8595)GCC>ACC	p.A2865T	DNAH9_uc010coo.2_Missense_Mutation_p.A2159T	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2865	AAA 4 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GATGGACCTGGCCAGCCTGTG	0.448													34	47					0	0	0.003271	0	0
RICH2	9912	broad.mit.edu	37	17	12883419	12883419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:12883419G>A	uc002gnr.3	+	19	2135	c.1808G>A	c.(1807-1809)GGA>GAA	p.G603E	RICH2_uc010vvk.1_Missense_Mutation_p.G603E|RICH2_uc010vvl.1_Missense_Mutation_p.G597E|RICH2_uc002gns.3_Missense_Mutation_p.G397E|RICH2_uc010vvm.1_Missense_Mutation_p.G597E|RICH2_uc010vvn.1_Intron	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	603					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GCACAGAAAGGAAGTCCAGGC	0.592													7	23					0	0	0.001984	0	0
FBXW10	10517	broad.mit.edu	37	17	18654336	18654336	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:18654336G>A	uc002guk.2	+	5	1324	c.1092G>A	c.(1090-1092)GTG>GTA	p.V364V	FBXW10_uc002guj.2_Silent_p.V364V|FBXW10_uc002gul.2_Silent_p.V393V|FBXW10_uc010cqh.1_Silent_p.V364V	NM_031456	NP_113644	Q5XX13	FBW10_HUMAN	F-box and WD-40 domain protein 10	364										ovary(1)	1						GCATGCGTGTGAAACATCCGA	0.463													62	106					0	0	0.014410	0	0
NLK	51701	broad.mit.edu	37	17	26519196	26519196	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:26519196C>T	uc010crj.2	+	10	1698	c.1486C>T	c.(1486-1488)CTC>TTC	p.L496F	NLK_uc010cri.1_RNA	NM_016231	NP_057315	Q9UBE8	NLK_HUMAN	nemo like kinase	496					intracellular protein kinase cascade|negative regulation of Wnt receptor signaling pathway|peptidyl-threonine phosphorylation|regulation of transcription, DNA-dependent|serine phosphorylation of STAT3 protein|transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway|Wnt receptor signaling pathway	cytoplasm|nucleus	ATP binding|magnesium ion binding|MAP kinase activity|SH2 domain binding|transcription factor binding|ubiquitin protein ligase binding			ovary(1)|lung(1)|central_nervous_system(1)	3	all_lung(13;0.000343)|Lung NSC(42;0.00184)			UCEC - Uterine corpus endometrioid carcinoma (53;0.168)		CAGAGTGCCTCTCTGCATCAA	0.373													8	9					0	0	0.006214	0	0
MYO18A	399687	broad.mit.edu	37	17	27437624	27437624	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:27437624G>A	uc002hdt.1	-	18	3075	c.2917C>T	c.(2917-2919)CTG>TTG	p.L973L	MYO18A_uc010wbc.1_Silent_p.L515L|MYO18A_uc002hds.2_Silent_p.L515L|MYO18A_uc010csa.1_Silent_p.L973L|MYO18A_uc002hdu.1_Silent_p.L973L|MYO18A_uc010wbd.1_Silent_p.L642L	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	973	Myosin head-like.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			CCCAGAAACAGGTTGCTGATG	0.652													13	12					0	0	0.002450	0	0
TP53I13	90313	broad.mit.edu	37	17	27899364	27899364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:27899364C>T	uc002hee.2	+	6	756	c.718C>T	c.(718-720)CCT>TCT	p.P240S		NM_138349	NP_612358	Q8NBR0	P5I13_HUMAN	tumor protein p53 inducible protein 13	240	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane					0				READ - Rectum adenocarcinoma(3;0.236)		GGCGGGAATCCCTGGTAGGGA	0.657													28	31					0	0	0.009535	0	0
SLC6A4	6532	broad.mit.edu	37	17	28537620	28537620	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:28537620G>A	uc002hey.3	-	11	1906	c.1362C>T	c.(1360-1362)TTC>TTT	p.F454F	SLC6A4_uc010csg.2_RNA	NM_001045	NP_001036	P31645	SC6A4_HUMAN	solute carrier family 6 member 4	454					response to toxin|serotonin uptake|thalamus development	cytosol|endomembrane system|endosome membrane|membrane raft	actin filament binding|Rab GTPase binding|serotonin transmembrane transporter activity|serotonin:sodium symporter activity			skin(3)|ovary(1)	4					Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Citalopram(DB00215)|Clomipramine(DB01242)|Cocaine(DB00907)|Desipramine(DB01151)|Dexfenfluramine(DB01191)|Dextromethorphan(DB00514)|Doxepin(DB01142)|Duloxetine(DB00476)|Escitalopram(DB01175)|Fluoxetine(DB00472)|Fluvoxamine(DB00176)|Imipramine(DB00458)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Minaprine(DB00805)|Nefazodone(DB01149)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phentermine(DB00191)|Protriptyline(DB00344)|Sertraline(DB01104)|Sibutramine(DB01105)|Tegaserod(DB01079)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)|Zimelidine(DB04832)	AGACGTGTGGGAACTCATCCA	0.592													46	53					0	0	0.014410	0	0
NF1	4763	broad.mit.edu	37	17	29483086	29483087	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:29483086_29483087AC>TT	uc002hgg.2	+	2	479_480	c.146_147AC>TT	c.(145-147)TAC>TTT	p.Y49F	NF1_uc002hge.1_Missense_Mutation_p.Y49F|NF1_uc002hgf.1_Missense_Mutation_p.Y49F|NF1_uc002hgh.2_Missense_Mutation_p.Y49F|NF1_uc010csn.1_5'UTR	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	49					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.0?(5)|p.?(3)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		ATTTCCAAATACAAGTTTTCTT	0.337			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			17	38					0	0	0.004672	0	0
ACCN1	40	broad.mit.edu	37	17	32483160	32483160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:32483160G>A	uc002hhu.2	-	1	666	c.392C>T	c.(391-393)CCC>CTC	p.P131L		NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	131	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CAGCACGGAGGGGTCAGCCAG	0.617													54	69					0	0	0.014410	0	0
UNC45B	146862	broad.mit.edu	37	17	33513465	33513465	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:33513465C>T	uc002hja.2	+	20	2780	c.2683C>T	c.(2683-2685)CTG>TTG	p.L895L	UNC45B_uc002hjb.2_Silent_p.L893L|UNC45B_uc002hjc.2_Silent_p.L893L|UNC45B_uc010cto.2_Silent_p.L814L	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	895					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GCTGGAGATCCTGACTGTGGT	0.537													26	33					0	0	0.003330	0	0
SLFN13	146857	broad.mit.edu	37	17	33772081	33772081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:33772081G>A	uc002hjk.1	-	1	949	c.619C>T	c.(619-621)CCT>TCT	p.P207S	SLFN13_uc010wch.1_Missense_Mutation_p.P207S|SLFN13_uc002hjl.2_Missense_Mutation_p.P207S|SLFN13_uc010ctt.2_Intron|SLFN13_uc002hjm.2_Intron	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	207						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GGAGACTCAGGAAAAGATAGG	0.328													40	50					0	0	0.006999	0	0
SLFN12L	342615	broad.mit.edu	37	17	33806595	33806595	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:33806595C>T	uc002hjn.2	-	3	1600	c.721G>A	c.(721-723)GAA>AAA	p.E241K		NM_001145027	NP_001138499			schlafen family member 12-like											ovary(1)	1						GTCAATTTTTCTTTATAACCA	0.358													6	13					0	0	0.001168	0	0
TBC1D3	729873	broad.mit.edu	37	17	36288236	36288236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:36288236G>A	uc002hoo.2	+	6	479	c.322G>A	c.(322-324)GGC>AGC	p.G108S	TBC1D3_uc002hop.2_RNA|TBC1D3_uc010wdj.1_Missense_Mutation_p.G28S|TBC1D3_uc010cvf.1_Missense_Mutation_p.G108S|TBC1D3_uc002hoq.2_Missense_Mutation_p.G108S|TBC1D3_uc010wdk.1_Missense_Mutation_p.G169S|uc002hpl.2_5'Flank|uc002hor.2_5'Flank	NM_032258	NP_115634	Q8IZP1	TBC3A_HUMAN	TBC1 domain family, member 3F	108	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0	Breast(7;2.97e-12)	Breast(25;0.102)|Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		GAACATCCGGGGCCCGATGTG	0.557													63	676					0	0	0.014410	0	0
KRT25	147183	broad.mit.edu	37	17	38911513	38911513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:38911513C>T	uc002hve.2	-	1	72	c.11G>A	c.(10-12)CGA>CAA	p.R4Q		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	4	Head.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				ACTGGAAAGTCGAAGAGACAT	0.488													16	26					0	0	0.004990	0	0
KRT39	390792	broad.mit.edu	37	17	39122874	39122874	+	Missense_Mutation	SNP	G	A	A	rs147200744		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:39122874G>A	uc002hvo.1	-	1	271	c.235C>T	c.(235-237)CGT>TGT	p.R79C	KRT39_uc010wfm.1_5'UTR	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	79	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				AGAGAAAAACGGGCATTGAAG	0.512													108	114					0	0	0.014410	0	0
KRT40	125115	broad.mit.edu	37	17	39140424	39140424	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:39140424G>A	uc010cxh.1	-	3	263	c.102C>T	c.(100-102)CTC>CTT	p.L34L	KRT40_uc002hvq.1_RNA	NM_182497	NP_872303	Q6A162	K1C40_HUMAN	type I hair keratin KA36	34	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)				AGGTACCGGGGAGACAAGCTG	0.577													24	19					0	0	0.003954	0	0
KRT35	3886	broad.mit.edu	37	17	39637025	39637025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:39637025C>T	uc002hws.2	-	1	368	c.325G>A	c.(325-327)GCC>ACC	p.A109T		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	109	Rod.|Coil 1A.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				AGGTAGCCGGCCAGGCGGTCG	0.632													27	51					0	0	0.007291	0	0
KRT9	3857	broad.mit.edu	37	17	39728108	39728108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:39728108C>T	uc002hxe.3	-	1	203	c.137G>A	c.(136-138)CGA>CAA	p.R46Q	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	46	Head.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				AGAGCTGAATCGGCCCCCTCC	0.682													4	5					0	0	0.009096	0	0
Unknown	0	broad.mit.edu	37	17	40178933	40178933	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:40178933G>A	uc002hyu.2	-	4	650	c.507C>T	c.(505-507)ATC>ATT	p.I169I						RecName: Full=Zinc finger protein 385C;																		GGGCAAGGACGATAGGTCCTG	0.602													7	10					0	0	0.001984	0	0
AOC3	8639	broad.mit.edu	37	17	41004371	41004371	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:41004371C>T	uc002ibv.2	+	1	1171	c.1011C>T	c.(1009-1011)TTC>TTT	p.F337F		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	337	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	TGTGGACTTTCTCCTTTGGCC	0.577													28	26					0	0	0.006320	0	0
ADAM11	4185	broad.mit.edu	37	17	42849142	42849142	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:42849142G>A	uc002ihh.2	+	6	486	c.486G>A	c.(484-486)GGG>GGA	p.G162G	ADAM11_uc010wjd.1_5'UTR	NM_002390	NP_002381	O75078	ADA11_HUMAN	ADAM metallopeptidase domain 11 preproprotein	162					integrin-mediated signaling pathway|proteolysis	integral to membrane|plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			pancreas(1)	1		Prostate(33;0.0959)				TCTCTGATGGGAACTTGACTT	0.652													25	33					0	0	0.004656	0	0
MAP3K14	9020	broad.mit.edu	37	17	43347910	43347910	+	Silent	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:43347910A>G	uc002iiw.1	-	12	1951	c.1842T>C	c.(1840-1842)CCT>CCC	p.P614P	MAP3K14_uc002iiu.1_Silent_p.P144P|MAP3K14_uc010daj.1_RNA|MAP3K14_uc002iiv.1_Silent_p.P198P	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	614	Interaction with ZFP91.|Protein kinase.				cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						TCTCCCTCACAGGCGGAGGCT	0.622													12	22					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	17	45105705	45105705	+	RNA	SNP	A	G	G	rs147936028	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:45105705A>G	uc010wki.1	+	5		c.1307A>G								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		GCCTGGCACGAAATGCAGTTT	0.303													6	226					0	0	0.001168	0	0
NPEPPS	9520	broad.mit.edu	37	17	45669398	45669398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:45669398G>A	uc002ilr.3	+	11	1560	c.1337G>A	c.(1336-1338)CGA>CAA	p.R446Q	NPEPPS_uc010wkt.1_Missense_Mutation_p.R442Q|NPEPPS_uc010wku.1_Missense_Mutation_p.R410Q|NPEPPS_uc010wkv.1_5'UTR	NM_006310	NP_006301	P55786	PSA_HUMAN	aminopeptidase puromycin sensitive	446					proteolysis	cytosol|nucleus	aminopeptidase activity|metallopeptidase activity|protein binding|zinc ion binding				0						TCTGTCATCCGAATGCTGCAT	0.373													6	40					0	0	0.004482	0	0
KIF2B	84643	broad.mit.edu	37	17	51902255	51902255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:51902255G>A	uc002iua.2	+	1	2017	c.1861G>A	c.(1861-1863)GAA>AAA	p.E621K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	621					blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						CCAATGGCTGGAAAACATCCA	0.453													40	49					0	0	0.009718	0	0
AKAP1	8165	broad.mit.edu	37	17	55187450	55187450	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:55187450C>T	uc002iux.2	+	3	2010	c.1779C>T	c.(1777-1779)TTC>TTT	p.F593F	AKAP1_uc010wnl.1_Silent_p.F593F|AKAP1_uc002iuy.2_RNA|AKAP1_uc010dcm.2_Silent_p.F593F	NM_003488	NP_003479	Q92667	AKAP1_HUMAN	A-kinase anchor protein 1 precursor	593					blood coagulation	cytosol|integral to membrane|mitochondrial outer membrane	protein binding|RNA binding			ovary(1)	1	Breast(9;5.46e-08)					CTGAGAGCTTCCAAAATGCCC	0.562													59	63					0	0	0.014410	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:60342311G>T	uc010woz.1	-	14		c.1818C>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AAAACGAGGAGGCGAAGCTTG	0.458													6	88					5.4927e-09	5.76511e-09	0.004482	1	0
POLG2	11232	broad.mit.edu	37	17	62487001	62487001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:62487001G>A	uc002jei.2	-	4	964	c.881C>T	c.(880-882)CCC>CTC	p.P294L	POLG2_uc010deg.1_Missense_Mutation_p.P294L	NM_007215	NP_009146	Q9UHN1	DPOG2_HUMAN	DNA polymerase subunit gamma-2, mitochondrial	294					DNA repair|DNA-dependent DNA replication|glycyl-tRNA aminoacylation	mitochondrial chromosome	ATP binding|DNA-directed DNA polymerase activity|glycine-tRNA ligase activity|identical protein binding|single-stranded DNA binding			central_nervous_system(1)	1	Breast(5;2.15e-14)		BRCA - Breast invasive adenocarcinoma(8;4.97e-11)			CTTTCCCCAGGGAAAATTGTA	0.403													22	28					0	0	0.014323	0	0
BPTF	2186	broad.mit.edu	37	17	65914854	65914854	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:65914854C>T	uc002jgf.2	+	12	5389	c.5328C>T	c.(5326-5328)TCC>TCT	p.S1776S	BPTF_uc002jge.2_Silent_p.S1902S	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	1902					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			CAGTAAAGTCCTTAGCTGGAG	0.388													55	88					0	0	0.014410	0	0
KCTD2	23510	broad.mit.edu	37	17	73059116	73059116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:73059116C>T	uc002jmp.2	+	6	833	c.766C>T	c.(766-768)CTT>TTT	p.L256F	KCTD2_uc010dfz.2_RNA|KCTD2_uc002jmq.2_RNA	NM_015353	NP_056168	Q14681	KCTD2_HUMAN	potassium channel tetramerisation domain	256						voltage-gated potassium channel complex	voltage-gated potassium channel activity				0	all_lung(278;0.226)					CTTTCAGATTCTTCAGGAGAG	0.542													11	14					0	0	0.013537	0	0
ST6GALNAC2	10610	broad.mit.edu	37	17	74562237	74562237	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:74562237G>A	uc002jsg.3	-	9	1329	c.1074C>T	c.(1072-1074)GCC>GCT	p.A358A		NM_006456	NP_006447	Q9UJ37	SIA7B_HUMAN	sialyltransferase 7B	358	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity				0						CCCTCCACAGGGCAGCTTCCA	0.507													47	37					0	0	0.014410	0	0
ST6GALNAC1	55808	broad.mit.edu	37	17	74621517	74621517	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:74621517G>A	uc002jsh.2	-	9	1872	c.1698C>T	c.(1696-1698)AAC>AAT	p.N566N	ST6GALNAC1_uc002jsi.2_Silent_p.N434N|ST6GALNAC1_uc002jsj.2_RNA	NM_018414	NP_060884	Q9NSC7	SIA7A_HUMAN	sialyltransferase 7A	566	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity				0						TGAAGTCATGGTTTATGTAAA	0.493													23	34					0	0	0.003330	0	0
SEC14L1	6397	broad.mit.edu	37	17	75196569	75196569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:75196569C>T	uc002jto.2	+	9	1090	c.823C>T	c.(823-825)CCA>TCA	p.P275S	SEC14L1_uc010dhc.2_Missense_Mutation_p.P275S|SEC14L1_uc010wth.1_Missense_Mutation_p.P275S|SEC14L1_uc002jtm.2_Missense_Mutation_p.P275S|SEC14L1_uc010wti.1_Missense_Mutation_p.P241S	NM_003003	NP_002994	Q92503	S14L1_HUMAN	SEC14 (S. cerevisiae)-like 1 isoform a	275					transport	Golgi apparatus|integral to membrane	binding			ovary(2)	2						TTAATAGATTCCAAAAGATGA	0.299													27	46					0	0	0.006320	0	0
DNAH17	8632	broad.mit.edu	37	17	76455103	76455104	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:76455103_76455104GG>AA	uc010dhp.1	-	6	1062_1063	c.840_841CC>TT	c.(838-843)TCCCGG>TCTTGG	p.R281W	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			TTTTTGATCCGGGACAGCTTCT	0.579													37	51					0	0	0.004672	0	0
SLC38A10	124565	broad.mit.edu	37	17	79219721	79219721	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr17:79219721C>T	uc002jzz.1	-	16	3370	c.2995G>A	c.(2995-2997)GAG>AAG	p.E999K	SLC38A10_uc002jzy.1_Missense_Mutation_p.E917K	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	999					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CTCGGCTGCTCGTGGGACACA	0.701													39	45					0	0	0.009718	0	0
SMCHD1	23347	broad.mit.edu	37	18	2718389	2718389	+	Silent	SNP	A	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:2718389A>T	uc002klm.3	+	19	2604	c.2415A>T	c.(2413-2415)GCA>GCT	p.A805A	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	805					chromosome organization		ATP binding				0						ACACTTATGCAGGAAGACCAC	0.289													28	36					0	0	0.009535	0	0
MYOM1	8736	broad.mit.edu	37	18	3090697	3090697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:3090697C>T	uc002klp.2	-	27	4302	c.3968G>A	c.(3967-3969)GGA>GAA	p.G1323E	MYOM1_uc002klq.2_Missense_Mutation_p.G1227E	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1323						striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGTTGCTTTTCCATCTTGAAG	0.418													45	51					0	0	0.014410	0	0
MC2R	4158	broad.mit.edu	37	18	13885332	13885332	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:13885332G>A	uc002ksp.1	-	2	363	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	62	Helical; Name=2; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	AGCTACAGATGAAAAAGTACA	0.408													14	18					0	0	0.002450	0	0
CXADRP3	440224	broad.mit.edu	37	18	14478346	14478346	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:14478346G>A	uc010xai.1	-	3		c.1218C>T				NR_024076				Homo sapiens cDNA clone IMAGE:30390722, containing frame-shift errors.												0						ATGTTGGAAGGAGACATGGAT	0.498													11	10					0	0	0.008291	0	0
PSMA8	143471	broad.mit.edu	37	18	23759033	23759033	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:23759033T>C	uc002kvq.2	+	6	731	c.617T>C	c.(616-618)GTT>GCT	p.V206A	PSMA8_uc002kvo.2_Missense_Mutation_p.V162A|PSMA8_uc002kvp.2_Missense_Mutation_p.V200A|PSMA8_uc002kvr.2_Missense_Mutation_p.V174A	NM_144662	NP_653263	Q8TAA3	PSA7L_HUMAN	proteasome alpha 8 subunit isoform 1	206					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|proteasome core complex, alpha-subunit complex	threonine-type endopeptidase activity			skin(1)	1	all_cancers(21;0.000585)|Lung NSC(5;0.00148)|all_lung(6;0.0038)|Ovarian(20;0.124)		OV - Ovarian serous cystadenocarcinoma(3;0.000324)|all cancers(3;0.000954)|LUSC - Lung squamous cell carcinoma(2;0.181)			CTACATTAGGTTGTCCAGTCT	0.289													27	34					0	0	0.008361	0	0
DSG1	1828	broad.mit.edu	37	18	28913665	28913665	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:28913665C>T	uc002kwp.2	+	7	1010	c.798C>T	c.(796-798)ATC>ATT	p.I266I		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	266	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			ATGATAATATCCCTTACATGG	0.393													23	37					0	0	0.003330	0	0
DSG1	1828	broad.mit.edu	37	18	28916319	28916319	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:28916319C>T	uc002kwp.2	+	9	1220	c.1008C>T	c.(1006-1008)CCC>CCT	p.P336P		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	336	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TTTTCTAGCCCTTAGATTATG	0.289													8	16					0	0	0.003080	0	0
DTNA	1837	broad.mit.edu	37	18	32459604	32459604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:32459604G>A	uc010dmn.1	+	19	2003	c.2002G>A	c.(2002-2004)GCT>ACT	p.A668T	DTNA_uc002kxw.2_Missense_Mutation_p.A611T|DTNA_uc010dmj.2_Missense_Mutation_p.A608T|DTNA_uc002kxz.2_Missense_Mutation_p.A615T|DTNA_uc002kxy.2_Missense_Mutation_p.A608T|DTNA_uc010xby.1_Missense_Mutation_p.A358T|DTNA_uc010xbz.1_Missense_Mutation_p.A377T|DTNA_uc010xca.1_Missense_Mutation_p.A320T|DTNA_uc002kye.2_Missense_Mutation_p.A316T	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	668					neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						CTCTGAAAAGGCTTTTCTAGC	0.478													22	24					0	0	0.002780	0	0
SLC14A1	6563	broad.mit.edu	37	18	43311018	43311018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:43311018C>T	uc010xcn.1	+	5	509	c.190C>T	c.(190-192)CGG>TGG	p.R64W	SLC14A1_uc010dnk.2_Missense_Mutation_p.R120W|SLC14A1_uc002lbf.3_Missense_Mutation_p.R64W|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_5'UTR|SLC14A1_uc002lbh.3_Intron|SLC14A1_uc002lbi.3_Intron|SLC14A1_uc002lbj.3_Missense_Mutation_p.R120W|SLC14A1_uc002lbk.3_Missense_Mutation_p.R64W	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	64	Helical; (Potential).			R -> Q (in Ref. 8; ACV91713).		integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						CTGGATTCTCCGGGGCATATC	0.527													41	57					0	0	0.013114	0	0
CCDC11	220136	broad.mit.edu	37	18	47769285	47769285	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:47769285G>A	uc002lee.2	-	6	1289	c.1198C>T	c.(1198-1200)CAA>TAA	p.Q400*		NM_145020	NP_659457	Q96M91	CCD11_HUMAN	coiled-coil domain containing 11	400	Potential.									ovary(1)|pancreas(1)|skin(1)	3				STAD - Stomach adenocarcinoma(97;2.66e-05)|Colorectal(21;7.57e-05)|Lung(128;0.00932)|READ - Rectum adenocarcinoma(32;0.164)		TCTTGAACTTGAAGTTTTCTT	0.368													59	69					0	0	0.014410	0	0
DCC	1630	broad.mit.edu	37	18	51025821	51025821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:51025821C>T	uc002lfe.1	+	27	4639	c.4052C>T	c.(4051-4053)CCT>CTT	p.P1351L	DCC_uc010dpf.1_Missense_Mutation_p.P984L	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1351	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CCTTTGCTACCTCCACCAATG	0.473													42	55					0	0	0.014410	0	0
DCC	1630	broad.mit.edu	37	18	51025846	51025846	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:51025846G>A	uc002lfe.1	+	27	4664	c.4077G>A	c.(4075-4077)CCG>CCA	p.P1359P	DCC_uc010dpf.1_Silent_p.P992P	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	1359	Cytoplasmic (Potential).				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAATAGAACCGAAAGTCCCTT	0.448													36	57					0	0	0.005524	0	0
KIAA1468	57614	broad.mit.edu	37	18	59895792	59895792	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:59895792T>A	uc002lil.2	+	8	1624	c.1409T>A	c.(1408-1410)CTA>CAA	p.L470Q	KIAA1468_uc002lik.1_Missense_Mutation_p.L470Q|KIAA1468_uc010xel.1_Missense_Mutation_p.L470Q|KIAA1468_uc002lim.2_Missense_Mutation_p.L114Q	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	470							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				CCTTCTTCTCTATCAAGTAAA	0.358													13	16					0	0	0.001855	0	0
PHLPP1	23239	broad.mit.edu	37	18	60645673	60645673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:60645673C>T	uc002lis.2	+	18	2805	c.2627C>T	c.(2626-2628)GCC>GTC	p.A876V		NM_194449	NP_919431	O60346	PHLP1_HUMAN	PH domain and leucine rich repeat protein	1388	PP2C-like.				apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling	cytosol|membrane|nucleus	metal ion binding|protein serine/threonine phosphatase activity				0						GCCGTGGAAGCCGTGCGCAAC	0.642													8	6					0	0	0.010729	0	0
SERPINB4	6318	broad.mit.edu	37	18	61324524	61324524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:61324524C>T	uc002ljg.2	-	5	618	c.592G>A	c.(592-594)GAA>AAA	p.E198K	SERPINB3_uc002lji.2_Missense_Mutation_p.E198K|SERPINB3_uc010dqa.2_Missense_Mutation_p.E198K			P48594	SPB4_HUMAN	SubName: Full=Squamous cell carcinoma antigen 2;	198					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						CAAAATTTTTCCTCTTTAGTA	0.284													19	13					0	0	0.006122	0	0
SALL3	27164	broad.mit.edu	37	18	76754520	76754520	+	Silent	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr18:76754520G>T	uc002lmt.2	+	2	2529	c.2529G>T	c.(2527-2529)CTG>CTT	p.L843L	SALL3_uc010dra.2_Silent_p.L450L	NM_171999	NP_741996	Q9BXA9	SALL3_HUMAN	sal-like 3	843					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Esophageal squamous(42;0.129)|Melanoma(33;0.16)|Prostate(75;0.167)		OV - Ovarian serous cystadenocarcinoma(15;4.69e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0256)		TTGCCGCCCTGGAGAACCAGA	0.667													5	74					3.59834e-05	3.75984e-05	0.001168	1	0
C19orf21	126353	broad.mit.edu	37	19	757502	757502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:757502G>A	uc002lpo.2	+	2	639	c.556G>A	c.(556-558)GTT>ATT	p.V186I		NM_173481	NP_775752	Q8IVT2	CS021_HUMAN	hypothetical protein LOC126353	186										upper_aerodigestive_tract(1)	1		Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;0.000145)|all_lung(49;0.000236)|Breast(49;0.0014)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GGAGAACGTGGTTGACAGGGA	0.672													11	15					0	0	0.008291	0	0
TJP3	27134	broad.mit.edu	37	19	3738999	3738999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:3738999G>A	uc010xhv.1	+	12	1597	c.1597G>A	c.(1597-1599)GAC>AAC	p.D533N	TJP3_uc010xhs.1_Missense_Mutation_p.D500N|TJP3_uc010xht.1_Missense_Mutation_p.D464N|TJP3_uc010xhu.1_Missense_Mutation_p.D509N|TJP3_uc010xhw.1_Missense_Mutation_p.D519N	NM_014428	NP_055243	O95049	ZO3_HUMAN	tight junction protein 3	514	SH3.					tight junction	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0118)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCCGTGGCGACGTCTTCCA	0.672													38	44					0	0	0.005524	0	0
INSR	3643	broad.mit.edu	37	19	7267510	7267510	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:7267510G>A	uc002mgd.1	-	2	607	c.498C>T	c.(496-498)TCC>TCT	p.S166S	INSR_uc002mge.1_Silent_p.S166S|INSR_uc002mgf.2_Silent_p.S166S	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	166					activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TATCCTCCACGGAATCCAGGA	0.532													305	430					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9064001	9064001	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:9064001G>A	uc002mkp.2	-	3	23649	c.23445C>T	c.(23443-23445)TTC>TTT	p.F7815F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7817	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGTCTCAAGGAAGGCAGGAG	0.527													50	58					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9065029	9065029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:9065029G>A	uc002mkp.2	-	3	22621	c.22417C>T	c.(22417-22419)CCT>TCT	p.P7473S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7475	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTGAGAAAGGATGAATTTTC	0.473													44	68					0	0	0.013114	0	0
MUC16	94025	broad.mit.edu	37	19	9075173	9075173	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:9075173C>T	uc002mkp.2	-	3	12477	c.12273G>A	c.(12271-12273)ATG>ATA	p.M4091I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4093	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGCAAGGATCATTCCTCCAG	0.527													37	35					0	0	0.003755	0	0
MUC16	94025	broad.mit.edu	37	19	9077809	9077809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:9077809C>T	uc002mkp.2	-	3	9841	c.9637G>A	c.(9637-9639)GAA>AAA	p.E3213K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3214	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGCTGGGTTCCTTGGAGCTC	0.478													78	97					0	0	0.014410	0	0
MUC16	94025	broad.mit.edu	37	19	9089658	9089658	+	Silent	SNP	C	T	T	rs147920442	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:9089658C>T	uc002mkp.2	-	1	2361	c.2157G>A	c.(2155-2157)AAG>AAA	p.K719K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	719	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGGTGCTTATCTTGGTGTGTC	0.488													32	50					0	0	0.013726	0	0
OR7E24	26648	broad.mit.edu	37	19	9361804	9361804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:9361804G>A	uc002mlb.1	+	1	85	c.85G>A	c.(85-87)GAA>AAA	p.E29K		NM_001079935	NP_001073404	Q6IFN5	O7E24_HUMAN	olfactory receptor, family 7, subfamily E,	29	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGGTGTCTCAGAATTCCTCCT	0.502													11	14					0	0	0.010729	0	0
COL5A3	50509	broad.mit.edu	37	19	10089817	10089817	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:10089817C>T	uc002mmq.1	-	39	2951	c.2865G>A	c.(2863-2865)GAG>GAA	p.E955E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	955	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CCTTGGCCCCCTCTCTGCCTT	0.582													24	25					0	0	0.003954	0	0
C19orf66	55337	broad.mit.edu	37	19	10200677	10200677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:10200677C>T	uc002mmu.3	+	5	636	c.338C>T	c.(337-339)TCC>TTC	p.S113F	C19orf66_uc002mmv.3_Missense_Mutation_p.S113F|C19orf66_uc002mmw.3_Missense_Mutation_p.S62F	NM_018381	NP_060851	Q9NUL5	CS066_HUMAN	hypothetical protein LOC55337	113											0						TTTGCCTGCTCCTCCTGCGAC	0.602													11	6					0	0	0.008291	0	0
RAVER1	125950	broad.mit.edu	37	19	10433932	10433932	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:10433932C>A	uc002moa.2	-	5	1098	c.1018G>T	c.(1018-1020)GGA>TGA	p.G340*		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	323	Interaction with PTBP1 (By similarity).					cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			GGGAGGAGTCCCTTCCCCCGA	0.672													14	30					1.5739e-10	1.65643e-10	0.004007	1	0
EPOR	2057	broad.mit.edu	37	19	11489371	11489371	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:11489371A>G	uc002mrj.1	-	7	1047	c.911T>C	c.(910-912)TTC>TCC	p.F304S	EPOR_uc002mrh.2_5'UTR|EPOR_uc002mri.2_Missense_Mutation_p.F131S|EPOR_uc002mrk.1_Missense_Mutation_p.F131S|EPOR_uc002mrl.1_RNA|EPOR_uc010xlx.1_RNA|EPOR_uc010xly.1_Missense_Mutation_p.F131S	NM_000121	NP_000112	P19235	EPOR_HUMAN	erythropoietin receptor precursor	304	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	erythropoietin receptor activity|identical protein binding			ovary(1)	1					Darbepoetin alfa(DB00012)|Epoetin alfa(DB00016)	ACCTACCTGGAAGTTACCCTT	0.562													45	49					0	0	0.013114	0	0
ZNF823	55552	broad.mit.edu	37	19	11832982	11832982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:11832982G>A	uc002msm.2	-	4	1493	c.1367C>T	c.(1366-1368)TCT>TTT	p.S456F	ZNF823_uc010xmd.1_Missense_Mutation_p.S274F|ZNF823_uc010dyi.1_Missense_Mutation_p.S412F	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	456	C2H2-type 11; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TTGAAAGGAAGAGAGATCACT	0.423										HNSCC(68;0.2)			30	40					0	0	0.007291	0	0
ZNF440	126070	broad.mit.edu	37	19	11943726	11943726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:11943726C>T	uc002msp.1	+	4	1891	c.1735C>T	c.(1735-1737)CCT>TCT	p.P579S		NM_152357	NP_689570	Q8IYI8	ZN440_HUMAN	zinc finger protein 440	579					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TGTGGGAAACCCTTCGGATCT	0.468													14	20					0	0	0.002450	0	0
PRKACA	5566	broad.mit.edu	37	19	14208443	14208443	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:14208443C>A	uc002myc.2	-	7	790	c.590G>T	c.(589-591)TGG>TTG	p.W197L	PRKACA_uc002myb.2_Missense_Mutation_p.W189L|PRKACA_uc010xnm.1_Missense_Mutation_p.W139L|PRKACA_uc002myd.2_Missense_Mutation_p.W139L	NM_002730	NP_002721	P17612	KAPCA_HUMAN	cAMP-dependent protein kinase catalytic subunit	197	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|G2/M transition of mitotic cell cycle|gluconeogenesis|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|regulation of insulin secretion|transmembrane transport|triglyceride catabolic process|water transport	cAMP-dependent protein kinase complex|centrosome|cytosol|nucleoplasm|plasma membrane	ATP binding|cAMP-dependent protein kinase activity|cAMP-dependent protein kinase inhibitor activity|protein kinase binding			lung(1)	1						GCACAAGGTCCAAGTGCGGCC	0.637													27	37					4.7796e-09	5.02117e-09	0.004656	1	0
LPHN1	22859	broad.mit.edu	37	19	14269965	14269966	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:14269965_14269966CC>TT	uc010xnn.1	-	12	2396_2397	c.2100_2101GG>AA	c.(2098-2103)GAGGAG>GAAAAG	p.E701K	LPHN1_uc010xno.1_Missense_Mutation_p.E696K|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	701	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						CTCGGGTACTCCTCCTGGGGGA	0.614													36	59					0	0	0.004672	0	0
BRD4	23476	broad.mit.edu	37	19	15366341	15366341	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:15366341T>A	uc002nar.2	-	10	2036	c.1814A>T	c.(1813-1815)GAC>GTC	p.D605V	BRD4_uc002nas.2_Missense_Mutation_p.D605V|BRD4_uc002nat.3_Missense_Mutation_p.D605V	NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	605					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			CTTGCACTTGTCCTCTTCCTC	0.592			T	NUT|C15orf55	lethal midline carcinoma of young people								60	73					0	0	0.014410	0	0
OR10H2	26538	broad.mit.edu	37	19	15839113	15839113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:15839113C>T	uc002nbm.2	+	1	280	c.260C>T	c.(259-261)TCC>TTC	p.S87F		NM_013939	NP_039227	O60403	O10H2_HUMAN	olfactory receptor, family 10, subfamily H,	87	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3	all_hematologic(1;0.0517)|Acute lymphoblastic leukemia(2;0.074)					GACCTGCTGTCCACCCAGCGC	0.612													16	36					0	0	0.008871	0	0
CYP4F2	8529	broad.mit.edu	37	19	15989695	15989695	+	Silent	SNP	C	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:15989695C>G	uc002nbs.1	-	13	1499	c.1449G>C	c.(1447-1449)GCG>GCC	p.A483A	CYP4F2_uc010xot.1_Silent_p.A334A	NM_001082	NP_001073	P78329	CP4F2_HUMAN	cytochrome P450, family 4, subfamily F,	483					leukotriene metabolic process|long-chain fatty acid metabolic process|very long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|leukotriene-B4 20-monooxygenase activity|oxygen binding|protein binding			ovary(1)|skin(1)	2						GCAGCGTGAGCGCCAGGACCA	0.682													16	41					0	0	0.004990	0	0
CIB3	117286	broad.mit.edu	37	19	16280506	16280506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:16280506C>T	uc002nds.2	-	3	133	c.133G>A	c.(133-135)GAC>AAC	p.D45N	CIB3_uc010eae.2_5'UTR|CIB3_uc010eaf.2_Intron|CIB3_uc010eag.2_Intron	NM_054113	NP_473454	Q96Q77	CIB3_HUMAN	DNA-dependent protein kinase catalytic	45							calcium ion binding			ovary(1)	1						GTGGTATAGTCGAGGGGCACG	0.582													16	19					0	0	0.006122	0	0
NWD1	284434	broad.mit.edu	37	19	16908590	16908590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:16908590C>T	uc002neu.3	+	16	3774	c.3352C>T	c.(3352-3354)CGC>TGC	p.R1118C	NWD1_uc002net.3_Missense_Mutation_p.R983C|NWD1_uc002nev.3_Missense_Mutation_p.R912C			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1118	WD 7.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GAGGGGCTTTCGCCGATTCAT	0.537													104	120					0	0	0.014410	0	0
SIN3B	23309	broad.mit.edu	37	19	16952673	16952673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:16952673C>T	uc002ney.1	+	4	490	c.476C>T	c.(475-477)TCC>TTC	p.S159F	SIN3B_uc002new.2_Missense_Mutation_p.S159F|SIN3B_uc002nex.2_Missense_Mutation_p.S91F|SIN3B_uc002nez.1_Missense_Mutation_p.S159F	NM_015260	NP_056075	O75182	SIN3B_HUMAN	SIN3 homolog B, transcription regulator	159	PAH 2.				cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	protein binding			ovary(2)	2						GAGTCCGATTCCGTGGAATTC	0.522													27	23					0	0	0.004656	0	0
USHBP1	83878	broad.mit.edu	37	19	17373466	17373466	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:17373466C>T	uc002nfs.1	-	4	650	c.537G>A	c.(535-537)AGG>AGA	p.R179R	USHBP1_uc002nft.1_RNA|USHBP1_uc010xpk.1_Silent_p.R115R|USHBP1_uc010eam.1_Silent_p.R107R	NM_031941	NP_114147	Q8N6Y0	USBP1_HUMAN	Usher syndrome 1C binding protein 1	179							PDZ domain binding			ovary(1)	1						GCCAGGCATTCCTCTCGGCCA	0.662													30	40					0	0	0.010818	0	0
TSSK6	83983	broad.mit.edu	37	19	19625545	19625545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:19625545G>A	uc002nmr.2	-	1	925	c.692C>T	c.(691-693)CCC>CTC	p.P231L	TSSK6_uc002nmq.2_RNA|NDUFA13_uc002nms.2_5'Flank|NDUFA13_uc010xqx.1_5'Flank|NDUFA13_uc010xqy.1_5'Flank	NM_032037	NP_114426	Q9BXA6	TSSK6_HUMAN	testis-specific serine kinase 6	231	Protein kinase.				multicellular organismal development|sperm chromatin condensation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			stomach(1)	1						GAGGCCTTCGGGATAGAGCAC	0.697													23	44					0	0	0.003330	0	0
ZNF682	91120	broad.mit.edu	37	19	20117476	20117476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:20117476G>A	uc002noq.2	-	4	958	c.835C>T	c.(835-837)CAT>TAT	p.H279Y	ZNF682_uc002noo.2_Missense_Mutation_p.H247Y|ZNF682_uc002nop.2_Missense_Mutation_p.H247Y|ZNF682_uc010eck.2_Missense_Mutation_p.H203Y	NM_033196	NP_149973	O95780	ZN682_HUMAN	zinc finger protein 682 isoform 1	279	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TCTCCTGTATGAATTTTCTTA	0.398													34	37					0	0	0.012213	0	0
ZNF714	148206	broad.mit.edu	37	19	21300609	21300609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:21300609C>T	uc002npo.3	+	6	1502	c.1142C>T	c.(1141-1143)TCC>TTC	p.S381F	ZNF714_uc002npl.2_Missense_Mutation_p.S226F|ZNF714_uc010ecp.1_Missense_Mutation_p.S332F|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	381	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTTAACCACTCCTCAAAACTT	0.358													8	13					0	0	0.006214	0	0
ZNF493	284443	broad.mit.edu	37	19	21607153	21607153	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:21607153G>T	uc002npx.2	+	2	1588	c.1308G>T	c.(1306-1308)AAG>AAT	p.K436N	ZNF493_uc002npw.2_Missense_Mutation_p.K564N|ZNF493_uc002npy.2_Missense_Mutation_p.K436N	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	436	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						CTACACATAAGAGAATTCATA	0.353													6	7					3.59834e-05	3.75984e-05	0.001168	1	0
ZNF99	7652	broad.mit.edu	37	19	22941701	22941701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:22941701C>T	uc010xrh.1	-	5	737	c.737G>A	c.(736-738)GGA>GAA	p.G246E		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GGGTTTCTTTCCAGTATGAAT	0.373													14	16					0	0	0.003163	0	0
POP4	10775	broad.mit.edu	37	19	30104870	30104870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:30104870C>T	uc002nsf.2	+	6	573	c.517C>T	c.(517-519)CGC>TGC	p.R173C	POP4_uc002nsg.2_Missense_Mutation_p.R92C	NM_006627	NP_006618	O95707	RPP29_HUMAN	processing of precursor 4	173					mRNA cleavage|rRNA processing|tRNA processing	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease P activity|RNA binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			CAAAGAAGACCGCCTGAAAGG	0.453													16	13					0	0	0.004990	0	0
ZNF536	9745	broad.mit.edu	37	19	31039364	31039364	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:31039364C>T	uc002nsu.1	+	4	2976	c.2838C>T	c.(2836-2838)TCC>TCT	p.S946S	ZNF536_uc010edd.1_Silent_p.S946S	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	946					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					ACCCCCCTTCCATGAAAGTCC	0.517													81	86					0	0	0.014410	0	0
LRP3	4037	broad.mit.edu	37	19	33698215	33698215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:33698215C>T	uc010edh.2	+	7	2140	c.2047C>T	c.(2047-2049)CCC>TCC	p.P683S	LRP3_uc002nuk.3_Missense_Mutation_p.P557S	NM_002333	NP_002324	O75074	LRP3_HUMAN	low density lipoprotein receptor-related protein	683	Cytoplasmic (Potential).				receptor-mediated endocytosis	coated pit|integral to membrane	receptor activity			pancreas(2)|ovary(1)	3	Esophageal squamous(110;0.137)					TTCAGGGCCACCCTTGCCCTC	0.706													4	11					0	0	0.001168	0	0
ZNF599	148103	broad.mit.edu	37	19	35251394	35251394	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:35251394G>A	uc010edn.1	-	4	700	c.312C>T	c.(310-312)TTC>TTT	p.F104F	ZNF599_uc010edm.1_Silent_p.F67F	NM_001007248	NP_001007249	Q96NL3	ZN599_HUMAN	zinc finger protein 599	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2	all_lung(56;1.13e-07)|Lung NSC(56;1.81e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.138)			GAAGTTCCTGGAAAGAGGATT	0.438													28	27					0	0	0.007291	0	0
DPF1	8193	broad.mit.edu	37	19	38709272	38709273	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:38709272_38709273GG>AA	uc002ohl.2	-	5	564_565	c.537_538CC>TT	c.(535-540)GACCTC>GATTTC	p.L180F	DPF1_uc002ohm.2_Missense_Mutation_p.L180F|DPF1_uc002ohn.2_Missense_Mutation_p.L98F|DPF1_uc010xtu.1_Missense_Mutation_p.L154F|DPF1_uc010xtv.1_Missense_Mutation_p.L154F|DPF1_uc010xtw.1_Missense_Mutation_p.L154F	NM_004647	NP_004638	Q92782	DPF1_HUMAN	D4, zinc and double PHD fingers family 1 isoform	180					induction of apoptosis|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nBAF complex	zinc ion binding				0	all_cancers(60;1.24e-06)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			TCCACCTCGAGGTCATGCGGAA	0.55													26	32					0	0	0.004672	0	0
PRX	57716	broad.mit.edu	37	19	40903777	40903777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:40903777G>A	uc002onr.2	-	7	751	c.482C>T	c.(481-483)CCC>CTC	p.P161L	PRX_uc002onq.2_Missense_Mutation_p.P22L|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	161	Arg/Lys-rich (basic).|Nuclear localization signal (By similarity).				axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			GGAGAACTTGGGAAAGGAGAA	0.662													12	13					0	0	0.013537	0	0
CYP2A13	1553	broad.mit.edu	37	19	41600158	41600158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:41600158C>T	uc002opt.2	+	7	991	c.982C>T	c.(982-984)CAT>TAT	p.H328Y		NM_000766	NP_000757	Q16696	CP2AD_HUMAN	cytochrome P450, family 2, subfamily A,	328					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|coumarin 7-hydroxylase activity|electron carrier activity|heme binding			ovary(2)|skin(1)	3					Clomipramine(DB01242)|Nicotine(DB00184)	AGCCAAGGTCCATGAGGAGAT	0.537													29	28					0	0	0.006320	0	0
PSG3	5671	broad.mit.edu	37	19	43237134	43237134	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:43237134G>A	uc002oue.2	-	3	643	c.511C>T	c.(511-513)CCT>TCT	p.P171S	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Missense_Mutation_p.P193S	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	171	Ig-like C2-type 1.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGAGTCTCAGGATCACAGGTT	0.522													70	112					0	0	0.014410	0	0
PSG9	5678	broad.mit.edu	37	19	43772076	43772076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:43772076C>T	uc002owd.3	-	2	389	c.290G>A	c.(289-291)GGA>GAA	p.G97E	PSG9_uc002owe.3_Missense_Mutation_p.G97E|PSG9_uc010xwm.1_Missense_Mutation_p.G97E|PSG9_uc002owf.3_Missense_Mutation_p.G97E|PSG9_uc002owg.2_Missense_Mutation_p.G97E|PSG9_uc002owh.2_Missense_Mutation_p.G97E	NM_002784	NP_002775	Q00887	PSG9_HUMAN	pregnancy specific beta-1-glycoprotein 9	97	Ig-like V-type.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				TGTTTCTCTTCCACTGTATGC	0.428													80	130					0	0	0.014410	0	0
ZNF284	342909	broad.mit.edu	37	19	44590447	44590447	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:44590447C>T	uc002oyg.1	+	5	1032	c.816C>T	c.(814-816)TCC>TCT	p.S272S	ZNF284_uc010ejd.2_RNA	NM_001037813	NP_001032902	Q2VY69	ZN284_HUMAN	zinc finger protein 284	272	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0435)				TTCACAATTCCCAGCTTCGGG	0.393													27	35					0	0	0.003954	0	0
ZNF229	7772	broad.mit.edu	37	19	44932600	44932600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:44932600G>A	uc002oze.1	-	6	2790	c.2356C>T	c.(2356-2358)CAT>TAT	p.H786Y	ZNF229_uc010ejk.1_Missense_Mutation_p.H440Y|ZNF229_uc010ejl.1_Missense_Mutation_p.H780Y	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	786	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				ACTCTCTGATGAACATGAAGA	0.502													23	35					0	0	0.014323	0	0
EXOC3L2	90332	broad.mit.edu	37	19	45719416	45719417	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:45719416_45719417GG>AA	uc002pay.1	-	9	896_897	c.855_856CC>TT	c.(853-858)CCCCAT>CCTTAT	p.H286Y		NM_138568	NP_612635	Q2M3D2	EX3L2_HUMAN	exocyst complex component 3-like 2	286										ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00883)		TCAGCCAAATGGGGCACCACGG	0.644													19	27					0	0	0.004672	0	0
IGFL3	388555	broad.mit.edu	37	19	46627345	46627345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:46627345G>A	uc002pea.1	-	3	173	c.148C>T	c.(148-150)CCT>TCT	p.P50S		NM_207393	NP_997276	Q6UXB1	IGFL3_HUMAN	IGF-like family member 3 precursor	50						extracellular region	protein binding				0		Ovarian(192;0.0175)|all_neural(266;0.0476)		OV - Ovarian serous cystadenocarcinoma(262;0.00473)|GBM - Glioblastoma multiforme(486;0.0149)|Epithelial(262;0.239)		TGCTCTGAAGGGTTGTAGATC	0.562													41	45					0	0	0.006230	0	0
LMTK3	114783	broad.mit.edu	37	19	49001418	49001418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:49001418C>T	uc002pjk.2	-	12	2995	c.2995G>A	c.(2995-2997)GAG>AAG	p.E999K		NM_001080434	NP_001073903			lemur tyrosine kinase 3											lung(5)|central_nervous_system(1)	6		all_lung(116;0.000147)|Lung NSC(112;0.000251)|all_epithelial(76;0.000326)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000114)|all cancers(93;0.000141)|Epithelial(262;0.00854)|GBM - Glioblastoma multiforme(486;0.0231)		GCTTTCTCCTCCCTCCTTGGG	0.642													64	67					0	0	0.014410	0	0
TSKS	60385	broad.mit.edu	37	19	50247522	50247522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:50247522G>A	uc002ppm.2	-	8	1338	c.1327C>T	c.(1327-1329)CGG>TGG	p.R443W		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	443							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		TGGTGGGACCGATCCAGGTTC	0.592													26	32					0	0	0.004656	0	0
NR1H2	7376	broad.mit.edu	37	19	50880885	50880885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:50880885C>T	uc010enw.2	+	3	299	c.23C>T	c.(22-24)TCC>TTC	p.S8F	NR1H2_uc002prv.3_RNA|NR1H2_uc002prz.3_Missense_Mutation_p.S8F|NR1H2_uc002psa.3_Missense_Mutation_p.S8F	NM_007121	NP_009052	P55055	NR1H2_HUMAN	nuclear receptor subfamily 1, group H, member 2	8					negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of pinocytosis|negative regulation of transcription, DNA-dependent|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00757)|GBM - Glioblastoma multiforme(134;0.0186)		ACCACGAGTTCCCTGGATACC	0.567													16	22					0	0	0.007413	0	0
GPR32	2854	broad.mit.edu	37	19	51274067	51274067	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:51274067C>T	uc010ycf.1	+	1	210	c.210C>T	c.(208-210)TTC>TTT	p.F70F		NM_001506	NP_001497	O75388	GPR32_HUMAN	G protein-coupled receptor 32	70	Cytoplasmic (Potential).					integral to plasma membrane	N-formyl peptide receptor activity			upper_aerodigestive_tract(1)	1		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		TGACTGTCTTCCGTATGGCAC	0.572													29	32					0	0	0.003755	0	0
KLK10	5655	broad.mit.edu	37	19	51518160	51518160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:51518160G>A	uc002puy.2	-	6	808	c.727C>T	c.(727-729)CTC>TTC	p.L243F	KLK10_uc002puz.2_Missense_Mutation_p.L243F|KLK10_uc002pva.2_Missense_Mutation_p.L243F	NM_145888	NP_665895	O43240	KLK10_HUMAN	kallikrein-related peptidase 10 preproprotein	243	Peptidase S1.				cell cycle|proteolysis	extracellular region	serine-type endopeptidase activity			lung(2)	2		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		CCCCACGAGAGGATGCCTTGG	0.542													27	32					0	0	0.006320	0	0
SIGLEC9	27180	broad.mit.edu	37	19	51631270	51631270	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:51631270C>T	uc002pvu.2	+	5	1147	c.1080C>T	c.(1078-1080)TTC>TTT	p.F360F	SIGLEC9_uc010yct.1_Silent_p.F360F	NM_014441	NP_055256	Q9Y336	SIGL9_HUMAN	sialic acid binding Ig-like lectin 9 precursor	360	Helical; (Potential).				cell adhesion|cell surface receptor linked signaling pathway	integral to plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0529)		GBM - Glioblastoma multiforme(134;0.000826)|OV - Ovarian serous cystadenocarcinoma(262;0.00295)		CCCTGGTCTTCCTGTCCTTCT	0.567													87	80					0	0	0.014410	0	0
SIGLEC12	89858	broad.mit.edu	37	19	51995067	51995067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:51995067G>A	uc002pwx.1	-	8	1672	c.1616C>T	c.(1615-1617)TCC>TTC	p.S539F	SIGLEC12_uc002pww.1_Missense_Mutation_p.S421F|SIGLEC12_uc010eoy.1_Missense_Mutation_p.S266F	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	539	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		ATCTGCCGGGGATTCAATCAG	0.612													25	20					0	0	0.004656	0	0
FPR1	2357	broad.mit.edu	37	19	52249604	52249604	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:52249604G>A	uc002pxq.2	-	2	739	c.644C>T	c.(643-645)TCC>TTC	p.S215F		NM_002029	NP_002020	P21462	FPR1_HUMAN	formyl peptide receptor 1	215	Helical; Name=5; (Potential).				activation of MAPK activity|cellular component movement|chemotaxis|G-protein signaling, coupled to cAMP nucleotide second messenger|nitric oxide mediated signal transduction	endosome|integral to membrane|plasma membrane	N-formyl peptide receptor activity			ovary(1)|lung(1)|skin(1)	3		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00106)|OV - Ovarian serous cystadenocarcinoma(262;0.018)	Nedocromil(DB00716)	AGCAACGATGGACATGGGTGC	0.527													28	47					0	0	0.013726	0	0
ZNF534	147658	broad.mit.edu	37	19	52942068	52942068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:52942068C>T	uc002pzk.2	+	4	1455	c.1394C>T	c.(1393-1395)TCC>TTC	p.S465F	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Missense_Mutation_p.S452F	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	465	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CACAAGTCTTCCCTAACCTAT	0.423													4	1					0	0	0.000602	0	0
ZNF665	79788	broad.mit.edu	37	19	53667831	53667831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:53667831G>A	uc010eqm.1	-	4	2012	c.1912C>T	c.(1912-1914)CGT>TGT	p.R638C		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	573	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		AGGGTTGAACGAACACTGAAG	0.393													25	43					0	0	0.004656	0	0
VN1R4	317703	broad.mit.edu	37	19	53770607	53770607	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:53770607G>A	uc010ydu.1	-	1	312	c.312C>T	c.(310-312)TTC>TTT	p.F104F		NM_173857	NP_776256	Q7Z5H5	VN1R4_HUMAN	vomeronasal 1 receptor 4	104	Helical; Name=3; (Potential).				response to pheromone	actin cytoskeleton|cytoplasm|integral to membrane|plasma membrane	pheromone receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.00294)		TGATCACCTGGAAGACACTCA	0.488										HNSCC(26;0.072)			13	19					0	0	0.001855	0	0
ZNF761	388561	broad.mit.edu	37	19	53959621	53959621	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:53959621C>T	uc010eqp.2	+	7	2318	c.1860C>T	c.(1858-1860)TCC>TCT	p.S620S	ZNF761_uc010ydy.1_Silent_p.S566S|ZNF761_uc002qbt.1_Silent_p.S566S	NM_001008401	NP_001008401	Q86XN6	ZN761_HUMAN	zinc finger protein 761	620	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				GBM - Glioblastoma multiforme(134;0.00786)		GGACGTCATCCCTTACATGCC	0.398													28	58					0	0	0.010818	0	0
LILRP2	79166	broad.mit.edu	37	19	55220543	55220543	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:55220543G>A	uc002qgs.1	+	1		c.943G>A			LILRP2_uc002qgt.1_RNA	NR_003061				Homo sapiens leukocyte immunoglobulin-like receptor pseudogene 2 (LILRP2), non-coding RNA.												0						GCCCACCAGAGCCCAGGAACA	0.572													4	8					0	0	0.009096	0	0
KIR3DL2	3812	broad.mit.edu	37	19	55363668	55363668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:55363668C>T	uc002qho.3	+	3	319	c.286C>T	c.(286-288)CGG>TGG	p.R96W	KIR3DL1_uc002qhl.3_Intron|KIR2DS4_uc002qhn.1_Intron|KIR3DL2_uc010esh.2_Missense_Mutation_p.R96W	NM_006737	NP_006728	P43630	KI3L2_HUMAN	killer cell immunoglobulin-like receptor, three	96	Extracellular (Potential).|Ig-like C2-type 1.				cellular defense response|regulation of immune response	integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(193;0.0192)		CTACAGATGTCGGGGTTCACG	0.582													34	57					0	0	0.014410	0	0
NLRP11	204801	broad.mit.edu	37	19	56321202	56321202	+	Silent	SNP	G	A	A	rs140447447	byFrequency	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:56321202G>A	uc010ygf.1	-	5	1485	c.774C>T	c.(772-774)CTC>CTT	p.L258L	NLRP11_uc002qlz.2_Silent_p.L159L|NLRP11_uc002qmb.2_Silent_p.L159L|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	258	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		AACTGACCAGGAGAACTGGAA	0.443													23	28					0	0	0.003330	0	0
NLRP13	126204	broad.mit.edu	37	19	56407388	56407388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:56407388C>T	uc010ygg.1	-	11	3080	c.3055G>A	c.(3055-3057)GAA>AAA	p.E1019K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	1019	LRR 7.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GTATCCAATTCATTGCCTAGA	0.468													61	83					0	0	0.014410	0	0
NLRP5	126206	broad.mit.edu	37	19	56515139	56515139	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:56515139C>T	uc002qmj.2	+	2	120	c.120C>T	c.(118-120)TTC>TTT	p.F40F	NLRP5_uc002qmi.2_Silent_p.F40F	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	40						mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		ATCCACTTTTCCCCCAAAACC	0.438													45	58					0	0	0.013114	0	0
ZNF582	147948	broad.mit.edu	37	19	56896237	56896237	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:56896237C>T	uc002qmz.1	-	5	708	c.549G>A	c.(547-549)AAG>AAA	p.K183K	ZNF582_uc002qmy.2_Silent_p.K214K	NM_144690	NP_653291	Q96NG8	ZN582_HUMAN	zinc finger protein 582	183	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|large_intestine(1)	4		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0547)		TAAGGAGTTCCTTTTGCCAGA	0.338													24	29					0	0	0.014323	0	0
USP29	57663	broad.mit.edu	37	19	57641439	57641439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:57641439C>T	uc002qny.2	+	4	1752	c.1396C>T	c.(1396-1398)CCT>TCT	p.P466S		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	466					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AAAACCACTTCCTTTGTCCAT	0.383													40	50					0	0	0.004878	0	0
ZNF814	730051	broad.mit.edu	37	19	58386284	58386284	+	Silent	SNP	T	C	C	rs148592080	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:58386284T>C	uc002qqo.2	-	3	746	c.474A>G	c.(472-474)GCA>GCG	p.A158A	ZNF814_uc002qqk.2_Intron|ZNF814_uc010yhl.1_Intron	NM_001144989	NP_001138461	B7Z6K7	ZN814_HUMAN	zinc finger protein 814	158				A -> V (in Ref. 1; BAH13293).	regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding				0						TACACCTCTTTGCAAACAACG	0.493													3	43					0	0	0.004672	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565116	58565116	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:58565116C>T	uc002qrc.1	+	6	1171	c.924C>T	c.(922-924)ATC>ATT	p.I308I		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	308	C2H2-type 1.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		CCCACTTCATCGAGCACCAGA	0.632													26	35					0	0	0.006320	0	0
SLC27A5	10998	broad.mit.edu	37	19	59022207	59022207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:59022207C>T	uc002qtc.2	-	2	889	c.779G>A	c.(778-780)GGG>GAG	p.G260E		NM_012254	NP_036386	Q9Y2P5	S27A5_HUMAN	solute carrier family 27 (fatty acid	260	Cytoplasmic (Probable).				bile acid and bile salt transport|bile acid biosynthetic process|very long-chain fatty acid metabolic process	endoplasmic reticulum membrane|integral to membrane	ATP binding|cholate-CoA ligase activity|long-chain fatty acid-CoA ligase activity				0		all_cancers(17;4.4e-22)|all_epithelial(17;2.15e-16)|Lung NSC(17;1.24e-06)|all_lung(17;5.41e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Ovarian(87;0.0443)|Breast(46;0.0928)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0168)|Lung(386;0.181)		AGCCCCCACCCCTGGTGTAGG	0.637													29	27					0	0	0.007291	0	0
PXDN	7837	broad.mit.edu	37	2	1653137	1653137	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:1653137C>T	uc002qxa.2	-	17	2479	c.2415G>A	c.(2413-2415)ACG>ACA	p.T805T		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	805					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		TGACGGTCTCCGTCCCGATCA	0.652													20	26					0	0	0.012319	0	0
ASAP2	8853	broad.mit.edu	37	2	9528618	9528618	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:9528618C>T	uc002qzh.2	+	22	2666	c.2326C>T	c.(2326-2328)CCT>TCT	p.P776S	ASAP2_uc002qzi.2_Missense_Mutation_p.P776S	NM_003887	NP_003878	O43150	ASAP2_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	776	Pro-rich.				regulation of ARF GTPase activity	Golgi cisterna membrane|plasma membrane	ARF GTPase activator activity|protein binding|zinc ion binding				0						TCCCGCCCAGCCTGCAGCCCC	0.587													16	20					0	0	0.004990	0	0
FAM49A	81553	broad.mit.edu	37	2	16734264	16734264	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:16734264G>A	uc010exm.1	-	11	1060	c.912C>T	c.(910-912)TTC>TTT	p.F304F	FAM49A_uc002rck.1_Silent_p.F304F	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	304						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			GCTTTGTAGTGAACCTGGATG	0.448													16	28					0	0	0.008871	0	0
APOB	338	broad.mit.edu	37	2	21229594	21229594	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:21229594C>T	uc002red.2	-	26	10274	c.10146G>A	c.(10144-10146)GAG>GAA	p.E3382E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3382	LDL receptor binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TTGTGGTGCCCTCTAATTTGT	0.413													248	369					0	0	0.014410	0	0
SF3B14	51639	broad.mit.edu	37	2	24290698	24290698	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:24290698C>T	uc002rev.2	-	4	527	c.312G>A	c.(310-312)AAG>AAA	p.K104K	SF3B14_uc010eyb.2_RNA	NM_016047	NP_057131	Q9Y3B4	PM14_HUMAN	splicing factor 3B, 14 kDa subunit	104					nuclear mRNA splicing, via spliceosome	nucleoplasm|U12-type spliceosomal complex	nucleotide binding|protein binding|RNA binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCTCCTTCTTCTTTGTGTCCA	0.353													48	60					0	0	0.014410	0	0
DPYSL5	56896	broad.mit.edu	37	2	27157581	27157581	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:27157581A>C	uc002rhu.3	+	8	1084	c.926A>C	c.(925-927)TAC>TCC	p.Y309S	DPYSL5_uc002rhv.3_Missense_Mutation_p.Y309S	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	309					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					ACCTCAACCTACCTCATGAGC	0.557													96	156					0	0	0.014410	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27500791	27500791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:27500791G>A	uc002rjl.1	+	4	701	c.283G>A	c.(283-285)GAC>AAC	p.D95N	SLC30A3_uc010ylh.1_5'Flank|DNAJC5G_uc010yli.1_Intron|DNAJC5G_uc002rjm.1_Missense_Mutation_p.D95N	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	95	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GAAAATTTACGACCAGCATGG	0.418													26	36					0	0	0.004656	0	0
NRBP1	29959	broad.mit.edu	37	2	27664672	27664672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:27664672C>T	uc002rko.2	+	19	2433	c.1601C>T	c.(1600-1602)TCC>TTC	p.S534F	NRBP1_uc002rkq.2_Missense_Mutation_p.S533F|NRBP1_uc002rkp.2_Missense_Mutation_p.S534F|NRBP1_uc002rkr.2_Missense_Mutation_p.S325F|KRTCAP3_uc002rks.2_5'Flank|KRTCAP3_uc010ylr.1_5'Flank|KRTCAP3_uc002rkt.2_5'Flank	NM_013392	NP_037524	Q9UHY1	NRBP_HUMAN	nuclear receptor binding protein	534					ER to Golgi vesicle-mediated transport|gene expression|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cell cortex|endomembrane system|lamellipodium|membrane|nucleoplasm	ATP binding|protein homodimerization activity|protein kinase activity			ovary(2)|lung(1)	3	Acute lymphoblastic leukemia(172;0.155)					GTCACCGTCTCCTCTTAGAGC	0.577													64	54					0	0	0.014410	0	0
BRE	9577	broad.mit.edu	37	2	28521344	28521344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:28521344G>A	uc002rlr.2	+	12	1392	c.1074G>A	c.(1072-1074)ATG>ATA	p.M358I	BRE_uc002rlp.1_Missense_Mutation_p.M358I|BRE_uc002rlq.2_Missense_Mutation_p.M358I|BRE_uc002rls.2_Missense_Mutation_p.M358I|BRE_uc002rlt.2_Missense_Mutation_p.M358I|BRE_uc002rlu.2_Missense_Mutation_p.M358I|BRE_uc002rlv.2_Missense_Mutation_p.M220I|BRE_uc002rlx.2_RNA	NM_199194	NP_954664	Q9NXR7	BRE_HUMAN	brain and reproductive organ-expressed (TNFRSF1A	358	UEV-like 2.				apoptosis|chromatin modification|double-strand break repair|G2/M transition DNA damage checkpoint|positive regulation of anti-apoptosis|positive regulation of DNA repair|response to ionizing radiation|signal transduction	BRCA1-A complex|BRISC complex|cytoplasm|nuclear ubiquitin ligase complex	peroxisome targeting sequence binding|polyubiquitin binding|tumor necrosis factor receptor binding			lung(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GAAATGAAATGGCCAAAAGAG	0.343													35	33					0	0	0.013726	0	0
EHD3	30845	broad.mit.edu	37	2	31483665	31483665	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:31483665C>T	uc002rnu.2	+	4	1400	c.792C>T	c.(790-792)ATC>ATT	p.I264I	EHD3_uc010ymt.1_Intron	NM_014600	NP_055415	Q9NZN3	EHD3_HUMAN	EH-domain containing 3	264					blood coagulation|endocytic recycling|protein homooligomerization	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding|protein binding			skin(2)	2	Acute lymphoblastic leukemia(172;0.155)					CCCTCCTCATCCCTGACAACC	0.597													27	35					0	0	0.005443	0	0
XDH	7498	broad.mit.edu	37	2	31572901	31572901	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:31572901C>T	uc002rnv.1	-	25	2899	c.2820G>A	c.(2818-2820)GAG>GAA	p.E940E		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	940					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGCTTACCTCCTCTGCAGGCA	0.577													59	86					0	0	0.014410	0	0
SOS1	6654	broad.mit.edu	37	2	39285889	39285890	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:39285889_39285890GG>AA	uc002rrk.3	-	3	310_311	c.269_270CC>TT	c.(268-270)GCC>GTT	p.A90V	SOS1_uc010ynr.1_RNA	NM_005633	NP_005624	Q07889	SOS1_HUMAN	son of sevenless homolog 1	90					apoptosis|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|induction of apoptosis by extracellular signals|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol	DNA binding|protein binding|Rho GTPase activator activity|Rho guanyl-nucleotide exchange factor activity			ovary(4)|breast(3)|lung(2)|central_nervous_system(1)	10		all_hematologic(82;0.21)				TAGCTGATTGGGCATCAGCTAT	0.342									Noonan_syndrome				31	22					0	0	0.004672	0	0
FSHR	2492	broad.mit.edu	37	2	49216169	49216169	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:49216169G>A	uc002rww.2	-	6	545	c.471C>T	c.(469-471)ATC>ATT	p.I157I	FSHR_uc002rwx.2_Silent_p.I157I|FSHR_uc010fbn.2_Intron|FSHR_uc010fbo.1_RNA	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	157	LRR 5.|Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	CAATTGTGTGGATGTTTATGT	0.338									Gonadal_Dysgenesis_46_XX				9	15					0	0	0.008291	0	0
PAPOLG	64895	broad.mit.edu	37	2	61021139	61021139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:61021139C>T	uc002sai.2	+	19	2033	c.1802C>T	c.(1801-1803)CCC>CTC	p.P601L	PAPOLG_uc002saj.2_Missense_Mutation_p.P290L|PAPOLG_uc002sak.2_Missense_Mutation_p.P136L|PAPOLG_uc010fch.2_Missense_Mutation_p.P290L	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	601					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			GTATCACCCCCCACTGTGTGT	0.353													32	48					0	0	0.013726	0	0
MEIS1	4211	broad.mit.edu	37	2	66691305	66691305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:66691305C>T	uc002sdu.2	+	7	1152	c.695C>T	c.(694-696)TCC>TTC	p.S232F	MEIS1_uc002sdt.2_Missense_Mutation_p.S232F|MEIS1_uc002sdv.2_Missense_Mutation_p.S230F|MEIS1_uc010yqh.1_RNA|MEIS1_uc010yqi.1_Missense_Mutation_p.S167F|MEIS1_uc002sdw.1_Missense_Mutation_p.S88F	NM_002398	NP_002389	O00470	MEIS1_HUMAN	Meis homeobox 1	232	Ser/Thr-rich.						sequence-specific DNA binding transcription factor activity				0						CCAGGCCCTTCCAGCGGTGGC	0.493													5	7					0	0	0.000602	0	0
ARHGAP25	9938	broad.mit.edu	37	2	69015058	69015058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:69015058C>T	uc002seu.2	+	4	800	c.436C>T	c.(436-438)CTC>TTC	p.L146F	ARHGAP25_uc010yqk.1_Missense_Mutation_p.L120F|ARHGAP25_uc010fdg.2_Missense_Mutation_p.L146F|ARHGAP25_uc010yql.1_Intron|ARHGAP25_uc002sev.2_Missense_Mutation_p.L139F|ARHGAP25_uc002sew.2_Missense_Mutation_p.L139F|ARHGAP25_uc002sex.2_Missense_Mutation_p.L139F|ARHGAP25_uc010fdh.1_RNA	NM_001007231	NP_001007232	P42331	RHG25_HUMAN	Rho GTPase activating protein 25 isoform a	146	PH.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(2)|breast(2)	4						GGTTAAATTCCTCAGGAGAGT	0.547													30	38					0	0	0.006320	0	0
ADD2	119	broad.mit.edu	37	2	70900138	70900138	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:70900138C>T	uc002sgz.2	-	15	2207	c.1742G>A	c.(1741-1743)GGA>GAA	p.G581E	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.E610K|ADD2_uc002sha.2_Missense_Mutation_p.G275E|ADD2_uc002sgx.2_Missense_Mutation_p.E610K	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	581					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TTCTTTCTCTCCTGAAAAAAC	0.458													10	25					0	0	0.001855	0	0
C2orf78	388960	broad.mit.edu	37	2	74041328	74041328	+	Silent	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:74041328A>G	uc002sjr.1	+	2	943	c.822A>G	c.(820-822)CAA>CAG	p.Q274Q		NM_001080474	NP_001073943	A6NCI8	CB078_HUMAN	hypothetical protein LOC388960	274										ovary(2)	2						TGTCTTCTCAACCCATCACAG	0.463													43	63					0	0	0.014410	0	0
TET3	200424	broad.mit.edu	37	2	74274088	74274088	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:74274088G>A	uc002skb.3	+	1	639	c.639G>A	c.(637-639)AAG>AAA	p.K213K	TET3_uc010fez.1_Silent_p.K213K	NM_144993	NP_659430	O43151	TET3_HUMAN	tet oncogene family member 3	213							metal ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCATTGCCAAGGAAAAAAACA	0.607													19	26					0	0	0.008871	0	0
POLR1A	25885	broad.mit.edu	37	2	86310264	86310264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:86310264C>T	uc002sqs.2	-	7	1137	c.758G>A	c.(757-759)CGA>CAA	p.R253Q	POLR1A_uc002sqv.2_Missense_Mutation_p.R253Q	NM_015425	NP_056240	O95602	RPA1_HUMAN	DNA-directed RNA polymerase I A	253					termination of RNA polymerase I transcription|transcription elongation from RNA polymerase I promoter|transcription initiation from RNA polymerase I promoter	DNA-directed RNA polymerase I complex|nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|protein binding|zinc ion binding			ovary(2)|skin(1)	3						TAAGTATCCTCGTTTTCCTAT	0.443													20	40					0	0	0.002780	0	0
Unknown	0	broad.mit.edu	37	2	89513060	89513060	+	RNA	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:89513060T>C	uc010ytr.1	-	23		c.2828A>G			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ATCAGGAGCTTAGGAACTTTC	0.512													50	44					0	0	0.014410	0	0
KCNIP3	30818	broad.mit.edu	37	2	96040908	96040908	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:96040908C>T	uc002sup.2	+	5	514	c.399C>T	c.(397-399)TTC>TTT	p.F133F	KCNIP3_uc002suq.2_Silent_p.F107F	NM_013434	NP_038462	Q9Y2W7	CSEN_HUMAN	Kv channel interacting protein 3 isoform 1	133	EF-hand 2.				apoptosis|signal transduction|transcription, DNA-dependent	endoplasmic reticulum|Golgi apparatus|nucleus|plasma membrane	calcium ion binding|DNA binding|potassium channel activity|transcription corepressor activity|voltage-gated ion channel activity			breast(2)|ovary(1)	3				READ - Rectum adenocarcinoma(193;0.13)		ATGCACACTTCCTCTTCAACG	0.637													35	74					0	0	0.006230	0	0
NEURL3	93082	broad.mit.edu	37	2	97165184	97165184	+	RNA	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:97165184G>A	uc010fhx.2	-	4		c.767C>T			NEURL3_uc002swc.2_RNA					Homo sapiens cDNA FLJ54814 complete cds.												0						CTGGCTGTGGGATCTGAGGCA	0.632													31	40					0	0	0.010818	0	0
VWA3B	200403	broad.mit.edu	37	2	98744845	98744845	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:98744845G>A	uc002syo.2	+	6	1110	c.846G>A	c.(844-846)AAG>AAA	p.K282K	VWA3B_uc010yvh.1_Silent_p.K132K|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_Intron|VWA3B_uc002sym.2_Silent_p.K282K|VWA3B_uc002syn.1_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	282										ovary(3)|large_intestine(2)|skin(1)	6						CTTTTCTAAAGGATCTGAGTG	0.527													21	28					0	0	0.002780	0	0
CNGA3	1261	broad.mit.edu	37	2	99012414	99012414	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:99012414C>G	uc002syt.2	+	8	1198	c.781C>G	c.(781-783)CTG>GTG	p.L261V	CNGA3_uc002syu.2_Missense_Mutation_p.L243V|CNGA3_uc010fij.2_Missense_Mutation_p.L265V	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	261					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CCCCACCGACCTGGCTTACTT	0.517													24	36					0	0	0.004656	0	0
CNGA3	1261	broad.mit.edu	37	2	99012478	99012478	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:99012478C>T	uc002syt.2	+	8	1262	c.845C>T	c.(844-846)TCC>TTC	p.S282F	CNGA3_uc002syu.2_Missense_Mutation_p.S264F|CNGA3_uc010fij.2_Missense_Mutation_p.S286F	NM_001298	NP_001289	Q16281	CNGA3_HUMAN	cyclic nucleotide gated channel alpha 3 isoform	282					signal transduction|visual perception	integral to membrane	cGMP binding			ovary(5)|upper_aerodigestive_tract(1)	6						CTGAAGTTTTCCCGGCTCTTT	0.488													19	21					0	0	0.007413	0	0
NPAS2	4862	broad.mit.edu	37	2	101604668	101604668	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:101604668C>T	uc002tap.1	+	17	2043	c.1757C>T	c.(1756-1758)CCA>CTA	p.P586L	NPAS2_uc010yvt.1_Missense_Mutation_p.P651L|NPAS2_uc010fit.1_Intron	NM_002518	NP_002509	Q99743	NPAS2_HUMAN	neuronal PAS domain protein 2	586					central nervous system development|positive regulation of transcription from RNA polymerase II promoter|rhythmic process	transcription factor complex	DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(3)|upper_aerodigestive_tract(1)	4						CCCCAACTTCCAGGGCAGATC	0.592													37	42					0	0	0.003271	0	0
IL1R1	3554	broad.mit.edu	37	2	102793102	102793102	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:102793102G>A	uc002tbq.2	+	12	1911	c.1593G>A	c.(1591-1593)TGG>TGA	p.W531*	IL1R1_uc010fix.2_Nonsense_Mutation_p.W500*|IL1R1_uc002tbr.2_Nonsense_Mutation_p.W531*	NM_000877	NP_000868	P14778	IL1R1_HUMAN	interleukin 1 receptor, type I precursor	531	TIR.|Cytoplasmic (Potential).				innate immune response	integral to plasma membrane	interleukin-1, Type I, activating receptor activity|platelet-derived growth factor receptor binding			skin(1)	1					Anakinra(DB00026)	CAAGGTTCTGGAAGAATGTCA	0.483													20	26					0	0	0.007413	0	0
SLC9A2	6549	broad.mit.edu	37	2	103236547	103236547	+	Silent	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:103236547C>A	uc002tca.2	+	1	382	c.240C>A	c.(238-240)ATC>ATA	p.I80I		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	80						integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						ACGTGCAGATCCCCTTCGAGA	0.642													19	23					0.000295444	0.000307875	0.014323	1	0
TMEM182	130827	broad.mit.edu	37	2	103378691	103378691	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:103378691C>T	uc010fjb.2	+	1	202	c.15C>T	c.(13-15)ATC>ATT	p.I5I	TMEM182_uc002tcc.3_Intron|TMEM182_uc002tcd.3_Intron	NM_144632	NP_653233	Q6ZP80	TM182_HUMAN	transmembrane protein 182 precursor	5						integral to membrane					0						GACTAAATATCGCTATCTTCT	0.353													11	8					0	0	0.008291	0	0
RGPD4	285190	broad.mit.edu	37	2	108488174	108488174	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:108488174C>T	uc010ywk.1	+	20	3796	c.3714C>T	c.(3712-3714)CCC>CCT	p.P1238P	RGPD4_uc002tdu.2_Silent_p.P425P|RGPD4_uc010ywl.1_Intron	NM_182588	NP_872394	Q7Z3J3	RGPD4_HUMAN	RANBP2-like and GRIP domain containing 4	1238					intracellular transport		binding			skin(2)	2						CAATAAAACCCAATCCTGAAA	0.418													114	148					0	0	0.014410	0	0
IL1F10	84639	broad.mit.edu	37	2	113832361	113832361	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:113832361G>A	uc002tiu.2	+	4	255	c.180G>A	c.(178-180)GGG>GGA	p.G60G	IL1F10_uc002tiv.2_Silent_p.G60G|IL1F10_uc002tiw.2_Silent_p.G52G	NM_173161	NP_775184	Q8WWZ1	IL1FA_HUMAN	interleukin 1 family, member 10	60						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity			ovary(1)	1						TTTTCCTGGGGATCCAGGGAG	0.582													41	46					0	0	0.007835	0	0
DPP10	57628	broad.mit.edu	37	2	116535372	116535372	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:116535372G>A	uc002tla.1	+	15	1780	c.1323G>A	c.(1321-1323)CTG>CTA	p.L441L	DPP10_uc002tlb.1_Silent_p.L391L|DPP10_uc002tlc.1_Silent_p.L437L|DPP10_uc002tle.2_Silent_p.L445L|DPP10_uc002tlf.1_Silent_p.L434L	NM_020868	NP_065919	Q8N608	DPP10_HUMAN	dipeptidyl peptidase 10 isoform long	441	Extracellular (Potential).				proteolysis	integral to membrane|membrane fraction	serine-type peptidase activity			ovary(5)|large_intestine(2)|skin(2)|breast(1)	10						GTTACTTTCTGAGCACTGAAT	0.408													25	32					0	0	0.005443	0	0
INHBB	3625	broad.mit.edu	37	2	121107433	121107433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:121107433G>A	uc002tmn.2	+	2	1253	c.1207G>A	c.(1207-1209)GAG>AAG	p.E403K		NM_002193	NP_002184	P09529	INHBB_HUMAN	inhibin beta B subunit preproprotein	403					activin receptor signaling pathway|cellular response to insulin stimulus|cellular response to starvation|defense response|fat cell differentiation|growth|negative regulation of follicle-stimulating hormone secretion|negative regulation of hepatocyte growth factor biosynthetic process|negative regulation of insulin secretion|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|positive regulation of ovulation	extracellular region|perinuclear region of cytoplasm	cytokine activity|growth factor activity|hormone activity|host cell surface receptor binding|protein homodimerization activity			pancreas(2)|skin(1)	3		Prostate(154;0.122)				GATTGTGGAGGAGTGCGGCTG	0.632													11	9					0	0	0.010729	0	0
FAM123C	205147	broad.mit.edu	37	2	131521642	131521642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:131521642C>T	uc002trw.2	+	2	2187	c.1997C>T	c.(1996-1998)ACT>ATT	p.T666I	FAM123C_uc010fmv.2_Missense_Mutation_p.T666I|FAM123C_uc010fms.1_Missense_Mutation_p.T666I|FAM123C_uc010fmt.1_Missense_Mutation_p.T666I|FAM123C_uc010fmu.1_Missense_Mutation_p.T666I	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	666										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		GGAGGTGACACTCTGGATGCA	0.657													10	16					0	0	0.006214	0	0
NCKAP5	344148	broad.mit.edu	37	2	133489468	133489468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:133489468G>A	uc002ttp.2	-	17	5659	c.5285C>T	c.(5284-5286)TCT>TTT	p.S1762F	NCKAP5_uc002ttq.2_Missense_Mutation_p.S443F	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1762							protein binding				0						TCTCATGGAAGAAACTGCAGA	0.587													38	49					0	0	0.007835	0	0
LRP1B	53353	broad.mit.edu	37	2	141773438	141773438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:141773438C>T	uc002tvj.1	-	13	2989	c.2017G>A	c.(2017-2019)GTG>ATG	p.V673M	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	673	Extracellular (Potential).|LDL-receptor class B 7.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding	p.V673L(1)		lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ATCCTTCCCACGCTGTCATCT	0.413										TSP Lung(27;0.18)			25	32					0	0	0.006320	0	0
LRP1B	53353	broad.mit.edu	37	2	141777574	141777574	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:141777574C>T	uc002tvj.1	-	12	2859	c.1887G>A	c.(1885-1887)CTG>CTA	p.L629L	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	629	Extracellular (Potential).|LDL-receptor class B 6.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAGCTTTTTCCAGCCTGGCCA	0.428										TSP Lung(27;0.18)			38	45					0	0	0.004289	0	0
ARHGAP15	55843	broad.mit.edu	37	2	143973992	143973992	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:143973992G>T	uc002tvm.3	+	4	425	c.274G>T	c.(274-276)GCA>TCA	p.A92S	ARHGAP15_uc010zbl.1_Missense_Mutation_p.A92S	NM_018460	NP_060930	Q53QZ3	RHG15_HUMAN	ARHGAP15	92	PH.				regulation of cell shape|small GTPase mediated signal transduction	cytosol|membrane	protein binding|Rac GTPase activator activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.151)		AGCTAAAATTGCAGATGGAGG	0.308													32	45					4.39465e-27	4.71462e-27	0.013726	1	0
MBD5	55777	broad.mit.edu	37	2	149248107	149248107	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:149248107T>A	uc002twm.3	+	12	5195	c.4207T>A	c.(4207-4209)TTA>ATA	p.L1403I	MBD5_uc010zbs.1_Intron|MBD5_uc010fns.2_Missense_Mutation_p.L1403I|MBD5_uc002two.2_Missense_Mutation_p.L661I|MBD5_uc002twp.2_Missense_Mutation_p.L453I	NM_018328	NP_060798	Q9P267	MBD5_HUMAN	methyl-CpG binding domain protein 5	1403	PWWP.					chromosome|nucleus	chromatin binding|DNA binding			skin(3)|ovary(2)	5				BRCA - Breast invasive adenocarcinoma(221;0.0569)		GCCTGGAAAATTAGTAAGAGA	0.428													38	36					0	0	0.004878	0	0
NEB	4703	broad.mit.edu	37	2	152482132	152482132	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:152482132C>T	uc010fnx.2	-	67	9830	c.9639G>A	c.(9637-9639)TGG>TGA	p.W3213*		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	3213	Nebulin 87.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGTCTTTGTCCCAGGCTTCTG	0.338													9	15					0	0	0.004482	0	0
CACNB4	785	broad.mit.edu	37	2	152729006	152729006	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:152729006T>A	uc002tya.2	-	6	591	c.523A>T	c.(523-525)AAA>TAA	p.K175*	CACNB4_uc002txy.2_Nonsense_Mutation_p.K141*|CACNB4_uc002txz.2_Nonsense_Mutation_p.K157*|CACNB4_uc010fnz.2_Nonsense_Mutation_p.K175*|CACNB4_uc002tyb.2_Nonsense_Mutation_p.K141*	NM_000726	NP_000717	O00305	CACB4_HUMAN	calcium channel, voltage-dependent, beta 4	175					axon guidance|membrane depolarization|synaptic transmission	cytosol|internal side of plasma membrane|plasma membrane|synapse|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.156)	Verapamil(DB00661)	CCACTTGATTTCCTAGGATAT	0.383													23	40					0	0	0.003330	0	0
ACVR1C	130399	broad.mit.edu	37	2	158399337	158399337	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:158399337C>T	uc002tzk.3	-	6	1224	c.981G>A	c.(979-981)AAG>AAA	p.K327K	ACVR1C_uc002tzl.3_Silent_p.K247K|ACVR1C_uc010fof.2_Silent_p.K170K|ACVR1C_uc010foe.2_Silent_p.K277K	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	327	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						CTAAGATATTCTTTGATTTTA	0.368													34	52					0	0	0.003271	0	0
CCDC148	130940	broad.mit.edu	37	2	159107317	159107317	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:159107317C>T	uc002tzq.2	-	10	1481	c.1218G>A	c.(1216-1218)AAG>AAA	p.K406K	CCDC148_uc002tzr.2_Silent_p.K254K|CCDC148_uc010foh.2_Silent_p.K119K	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	406	Potential.|Glu/Lys-rich.									ovary(2)	2						gcaacaattccttcttcttcc	0.239													5	6					0	0	0.000602	0	0
KCNH7	90134	broad.mit.edu	37	2	163241346	163241346	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:163241346G>A	uc002uch.1	-	13	3026	c.2814C>T	c.(2812-2814)ATC>ATT	p.I938I		NM_033272	NP_150375	Q9NS40	KCNH7_HUMAN	potassium voltage-gated channel, subfamily H,	938	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	protein binding|signal transducer activity			ovary(3)|skin(2)	5					Ibutilide(DB00308)	CAATGGAGGAGATGAAAGATG	0.413													50	63					0	0	0.014410	0	0
SCN3A	6328	broad.mit.edu	37	2	165948804	165948804	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:165948804C>T	uc002ucx.2	-	27	5259	c.4767G>A	c.(4765-4767)TGG>TGA	p.W1589*	SCN3A_uc010zcy.1_Nonsense_Mutation_p.W72*|SCN3A_uc002ucy.2_Nonsense_Mutation_p.W1540*|SCN3A_uc002ucz.2_Nonsense_Mutation_p.W1540*	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1589	Helical; Name=S3 of repeat IV; (Potential).					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	CAAAGATGTTCCAGCCTATAG	0.433													20	37					0	0	0.007413	0	0
SCN2A	6326	broad.mit.edu	37	2	166201069	166201069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:166201069G>A	uc002udc.2	+	16	2857	c.2567G>A	c.(2566-2568)CGA>CAA	p.R856Q	SCN2A_uc002udd.2_Missense_Mutation_p.R856Q|SCN2A_uc002ude.2_Missense_Mutation_p.R856Q	NM_001040142	NP_001035232	Q99250	SCN2A_HUMAN	sodium channel, voltage-gated, type II, alpha	856	II.|Helical; Voltage-sensor; Name=S4 of repeat II; (Potential).				myelination	node of Ranvier|voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|breast(1)|pancreas(1)	8					Lamotrigine(DB00555)	TTCCAGCTCCGAGTTTTCAAG	0.318													18	20					0	0	0.004990	0	0
SCN1A	6323	broad.mit.edu	37	2	166929996	166929996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:166929996C>T	uc010zcz.1	-	1	154	c.136G>A	c.(136-138)GAA>AAA	p.E46K		NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	46						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	GGGCCATTTTCGTCGTCATCT	0.448													69	98					0	0	0.014410	0	0
SCN9A	6335	broad.mit.edu	37	2	167136983	167136983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:167136983C>T	uc010fpl.2	-	14	2535	c.2194G>A	c.(2194-2196)GAT>AAT	p.D732N	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	743	Helical; Name=S1 of repeat II; (Potential).|II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	ACAAAAGGATCCATTACAATA	0.333													10	7					0	0	0.006214	0	0
XIRP2	129446	broad.mit.edu	37	2	168105732	168105732	+	Silent	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:168105732C>A	uc002udx.2	+	8	7848	c.7830C>A	c.(7828-7830)CCC>CCA	p.P2610P	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Silent_p.P2435P|XIRP2_uc010fpq.2_Silent_p.P2388P|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2435					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGGTTCAACCCAGCCCAGGCT	0.463													35	42					3.90053e-15	4.13498e-15	0.012213	1	0
XIRP2	129446	broad.mit.edu	37	2	168107566	168107566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:168107566C>T	uc002udx.2	+	8	9682	c.9664C>T	c.(9664-9666)CGT>TGT	p.R3222C	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.R3047C|XIRP2_uc010fpq.2_Missense_Mutation_p.R3000C|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	3047					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TGCAACACTTCGTCGTCAAAT	0.448													25	45					0	0	0.003330	0	0
C2orf77	129881	broad.mit.edu	37	2	170507017	170507017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:170507017C>T	uc002ufe.2	-	7	1068	c.974G>A	c.(973-975)CGA>CAA	p.R325Q		NM_001085447	NP_001078916	Q0VFZ6	CB077_HUMAN	hypothetical protein LOC129881	325											0						TCTTTCTCTTCGTTTCTCCAT	0.348													11	11					0	0	0.010729	0	0
TTN	7273	broad.mit.edu	37	2	179427187	179427187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:179427187C>T	uc010zfg.1	-	275	76192	c.75968G>A	c.(75967-75969)GGT>GAT	p.G25323D	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G19018D|TTN_uc010zfi.1_Missense_Mutation_p.G18951D|TTN_uc010zfj.1_Missense_Mutation_p.G18826D	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26250							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTGCTGCCACCATCACTTTC	0.433													24	34					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179453361	179453361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:179453361C>T	uc010zfg.1	-	253	55611	c.55387G>A	c.(55387-55389)GAC>AAC	p.D18463N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D12158N|TTN_uc010zfi.1_Missense_Mutation_p.D12091N|TTN_uc010zfj.1_Missense_Mutation_p.D11966N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19390							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTCATGGTCTGGGAGGAGA	0.448													81	128					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179469891	179469891	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:179469891T>A	uc010zfg.1	-	229	46533	c.46309A>T	c.(46309-46311)ACT>TCT	p.T15437S	uc002umo.2_RNA|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T9132S|TTN_uc010zfi.1_Missense_Mutation_p.T9065S|TTN_uc010zfj.1_Missense_Mutation_p.T8940S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16364							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAATTACAGTTTCATTTTTG	0.468													27	23					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179475012	179475012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:179475012G>A	uc010zfg.1	-	220	43761	c.43537C>T	c.(43537-43539)CAT>TAT	p.H14513Y	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.H8208Y|TTN_uc010zfi.1_Missense_Mutation_p.H8141Y|TTN_uc010zfj.1_Missense_Mutation_p.H8016Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	15440							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGACATAATGAAGAATTGGG	0.428													72	95					0	0	0.014410	0	0
TTN	7273	broad.mit.edu	37	2	179614249	179614249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:179614249G>A	uc002unb.2	-	46	13102	c.12878C>T	c.(12877-12879)CCC>CTC	p.P4293L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGAGTAAAGGGACCAGCTGG	0.393													18	37					0	0	0.006122	0	0
TTN	7273	broad.mit.edu	37	2	179622310	179622310	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:179622310C>A	uc010zfi.1	-	44	10723	c.10499G>T	c.(10498-10500)GGG>GTG	p.G3500V	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133432	NP_597676	Q8WZ42	TITIN_HUMAN	titin isoform novex-1	3582							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGGCTTCCCCAGCACTATT	0.468													7	129					0.00307968	0.00319781	0.003080	1	0
ZSWIM2	151112	broad.mit.edu	37	2	187702044	187702044	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:187702044C>T	uc002upu.1	-	5	772	c.732G>A	c.(730-732)GGG>GGA	p.G244G		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	244	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TATAACACTTCCCCTCAATTG	0.368													22	51					0	0	0.002780	0	0
CALCRL	10203	broad.mit.edu	37	2	188211048	188211048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:188211048G>A	uc002upv.3	-	15	1797	c.1249C>T	c.(1249-1251)CGT>TGT	p.R417C	CALCRL_uc010frt.2_Missense_Mutation_p.R417C	NM_005795	NP_005786	Q16602	CALRL_HUMAN	calcitonin receptor-like precursor	417	Cytoplasmic (Potential).					integral to plasma membrane				lung(3)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0554)|Epithelial(96;0.227)			GACGCACTACGAAGAGCTTCT	0.378													12	21					0	0	0.013537	0	0
COL3A1	1281	broad.mit.edu	37	2	189861125	189861125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:189861125G>A	uc002uqj.1	+	24	1781	c.1664G>A	c.(1663-1665)GGA>GAA	p.G555E		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein	555	Triple-helical region.				axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TCTTATTAGGGAAGTCAAGGA	0.363													12	28					0	0	0.013537	0	0
STAT4	6775	broad.mit.edu	37	2	192012849	192012849	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:192012849G>A	uc002usm.1	-	2	335	c.81C>T	c.(79-81)CCC>CCT	p.P27P	STAT4_uc010zgm.1_RNA|STAT4_uc010zgn.1_RNA|STAT4_uc010zgo.1_RNA|STAT4_uc002usn.1_Silent_p.P27P|STAT4_uc002uso.2_Silent_p.P27P|STAT4_uc002usp.3_Silent_p.P27P|STAT4_uc010zgl.1_Silent_p.P27P	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	27					JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			GAATTTCCATGGGAAAGTTGT	0.393													30	30					0	0	0.007291	0	0
DNAH7	56171	broad.mit.edu	37	2	196738410	196738410	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:196738410G>A	uc002utj.3	-	39	6396	c.6295C>T	c.(6295-6297)CGA>TGA	p.R2099*		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	2099	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ACTGGATTTCGACCACCACCT	0.274													16	11					0	0	0.004990	0	0
C2orf60	129450	broad.mit.edu	37	2	200800763	200800763	+	Silent	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:200800763T>C	uc002uvi.3	-	7	848	c.582A>G	c.(580-582)AAA>AAG	p.K194K	C2orf60_uc002uvj.3_Silent_p.K31K|C2orf60_uc002uvk.3_RNA|C2orf60_uc010fss.2_Silent_p.K31K	NM_001039693	NP_001034782	A2RUC4	TYW5_HUMAN	hypothetical protein LOC129450	194	JmjC.				wybutosine biosynthetic process		iron ion binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein homodimerization activity|tRNA binding				0						GTACTTCTGATTTAGTACCTA	0.284													41	49					0	0	0.014410	0	0
AOX1	316	broad.mit.edu	37	2	201523929	201523929	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:201523929C>T	uc002uvx.2	+	28	3314	c.3213C>T	c.(3211-3213)CAC>CAT	p.H1071H	AOX1_uc010zhf.1_Silent_p.H627H|AOX1_uc010fsu.2_Silent_p.H437H	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	1071					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	CGAATGTCCACCTGCGTGGAA	0.443													26	29					0	0	0.003330	0	0
KLF7	8609	broad.mit.edu	37	2	208030259	208030260	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:208030259_208030260CC>TT	uc002vbz.1	-	1	355_356	c.33_34GG>AA	c.(31-36)CAGGAG>CAAAAG	p.E12K	KLF7_uc002vca.1_Missense_Mutation_p.E12K	NM_003709	NP_003700	O75840	KLF7_HUMAN	Kruppel-like factor 7 (ubiquitous)	12					regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity|zinc ion binding			central_nervous_system(1)|skin(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0856)|Lung(261;0.166)|Epithelial(149;0.173)		AGTTGTAGCTCCTGGAATATAC	0.51													49	73					0	0	0.004672	0	0
PLEKHM3	389072	broad.mit.edu	37	2	208773280	208773280	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:208773280G>A	uc002vcl.2	-	6	2398	c.1908C>T	c.(1906-1908)CTC>CTT	p.L636L	PLEKHM3_uc002vcm.2_Missense_Mutation_p.S651F	NM_001080475	NP_001073944	Q6ZWE6	PKHM3_HUMAN	pleckstrin homology domain containing, family M,	636					intracellular signal transduction		metal ion binding			ovary(1)	1						TCTGTTGAAGGAGGTATTCTC	0.438													34	44					0	0	0.004878	0	0
PIKFYVE	200576	broad.mit.edu	37	2	209190482	209190482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:209190482C>T	uc002vcz.2	+	20	3105	c.2947C>T	c.(2947-2949)CCT>TCT	p.P983S	PIKFYVE_uc010fun.1_Missense_Mutation_p.P664S|PIKFYVE_uc002vcy.1_Missense_Mutation_p.P927S	NM_015040	NP_055855	Q9Y2I7	FYV1_HUMAN	phosphatidylinositol-3-phosphate 5-kinase type	983					cellular protein metabolic process|intracellular signal transduction|protein localization to nucleus|retrograde transport, endosome to Golgi	early endosome membrane|membrane raft	1-phosphatidylinositol-3-phosphate 5-kinase activity|1-phosphatidylinositol-4-phosphate 5-kinase activity|ATP binding|metal ion binding|protein binding			ovary(5)|kidney(2)|pancreas(1)|central_nervous_system(1)|skin(1)	10						GTTGCCACTCCCTGTGGATGA	0.512													20	31					0	0	0.003330	0	0
MYL1	4632	broad.mit.edu	37	2	211163172	211163172	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:211163172C>T	uc002vec.2	-	3	405	c.276G>A	c.(274-276)AGG>AGA	p.R92R	MYL1_uc002veb.2_Silent_p.R48R	NM_079420	NP_524144	P05976	MYL1_HUMAN	fast skeletal myosin alkali light chain 1	92					muscle filament sliding|muscle organ development	cytosol|muscle myosin complex|sarcomere	calcium ion binding|structural constituent of muscle			ovary(1)	1				Epithelial(149;0.00573)|Lung(261;0.0422)|LUSC - Lung squamous cell carcinoma(261;0.0444)|all cancers(144;0.057)		CCAGAACTTTCCTGACCTCTG	0.428													43	69					0	0	0.014410	0	0
CPS1	1373	broad.mit.edu	37	2	211457632	211457632	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:211457632C>T	uc002vee.3	+	11	1248	c.1116C>T	c.(1114-1116)TTC>TTT	p.F372F	CPS1_uc010fur.2_Silent_p.F378F|CPS1_uc010fus.2_5'Flank	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	372	Glutamine amidotransferase type-1.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		AACCCTTCTTCGCTGTGCAGT	0.408													56	71					0	0	0.014410	0	0
CXCR1	3577	broad.mit.edu	37	2	219029360	219029360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:219029360C>T	uc002vhc.2	-	2	694	c.575G>A	c.(574-576)GGA>GAA	p.G192E		NM_000634	NP_000625	P25024	CXCR1_HUMAN	interleukin 8 receptor alpha	192	Extracellular (Potential).				dendritic cell chemotaxis|inflammatory response	integral to membrane|plasma membrane	interleukin-8 receptor activity			lung(2)	2						TGTGTCATTTCCCAGGACCTC	0.522													25	35					0	0	0.004656	0	0
STK36	27148	broad.mit.edu	37	2	219562684	219562684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:219562684C>T	uc002viu.2	+	25	3283	c.3017C>T	c.(3016-3018)GCC>GTC	p.A1006V	STK36_uc002viv.2_Missense_Mutation_p.A985V|STK36_uc002viw.2_Missense_Mutation_p.A184V|STK36_uc002vix.2_Missense_Mutation_p.A51V	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	1006					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GGTGTCTTGGCCGACCTCAGG	0.547													52	58					0	0	0.014410	0	0
PRKAG3	53632	broad.mit.edu	37	2	219695066	219695067	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:219695066_219695067CC>TT	uc002vjb.1	-	4	286_287	c.267_268GG>AA	c.(265-270)CTGGAG>CTAAAG	p.E90K	PRKAG3_uc010zkn.1_RNA|PRKAG3_uc010fvy.1_Missense_Mutation_p.E90K|PRKAG3_uc010zko.1_Missense_Mutation_p.E86K	NM_017431	NP_059127	Q9UGI9	AAKG3_HUMAN	AMP-activated protein kinase, non-catalytic	90					cell cycle arrest|fatty acid biosynthetic process|insulin receptor signaling pathway|intracellular protein kinase cascade|regulation of fatty acid oxidation	cytosol	AMP-activated protein kinase activity|protein kinase binding			ovary(1)|lung(1)	2		Renal(207;0.0474)		Epithelial(149;4.35e-07)|all cancers(144;8.96e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		AATGTGGCCTCCAGCCCGGTGG	0.619													19	28					0	0	0.004672	0	0
GLB1L	79411	broad.mit.edu	37	2	220104815	220104816	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:220104815_220104816AC>TT	uc002vkm.2	-	7	786_787	c.547_548GT>AA	c.(547-549)GTG>AAG	p.V183K	GLB1L_uc002vkk.2_Intron|GLB1L_uc010zkx.1_Intron|GLB1L_uc002vkn.2_Missense_Mutation_p.V183K	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor	183					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TTCATTCTCCACCTGCCAGAGG	0.54													20	26					0	0	0.004672	0	0
PTPRN	5798	broad.mit.edu	37	2	220167369	220167369	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:220167369G>A	uc002vkz.2	-	5	657	c.568C>T	c.(568-570)CTG>TTG	p.L190L	PTPRN_uc010zlc.1_Silent_p.L100L|PTPRN_uc002vla.2_Silent_p.L190L	NM_002846	NP_002837	Q16849	PTPRN_HUMAN	protein tyrosine phosphatase, receptor type, N	190	Extracellular (Potential).				response to reactive oxygen species	integral to plasma membrane	transmembrane receptor protein tyrosine phosphatase activity			ovary(2)|lung(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;4.22e-07)|all cancers(144;8.82e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)|STAD - Stomach adenocarcinoma(1183;0.0875)		TGTGGGGGCAGCAGCAGGTGC	0.627													30	33					0	0	0.003755	0	0
INHA	3623	broad.mit.edu	37	2	220440064	220440064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:220440064C>T	uc002vmk.1	+	2	1061	c.917C>T	c.(916-918)CCA>CTA	p.P306L		NM_002191	NP_002182	P05111	INHA_HUMAN	inhibin alpha subunit precursor	306					cell cycle arrest|cell surface receptor linked signaling pathway|cell-cell signaling|erythrocyte differentiation|hemoglobin biosynthetic process|induction of apoptosis|negative regulation of B cell differentiation|negative regulation of follicle-stimulating hormone secretion|negative regulation of interferon-gamma biosynthetic process|negative regulation of macrophage differentiation|negative regulation of phosphorylation|nervous system development|ovarian follicle development|positive regulation of follicle-stimulating hormone secretion|regulation of cell proliferation|response to external stimulus|skeletal system development	inhibin A complex|inhibin-betaglycan-ActRII complex	cytokine activity|growth factor activity|hormone activity|signal transducer activity			ovary(1)	1		Renal(207;0.0183)		Epithelial(149;4.58e-07)|all cancers(144;4.31e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00802)		CTGTCCCTTCCAGTCCCTGGG	0.632													36	55					0	0	0.003755	0	0
SLC4A3	6508	broad.mit.edu	37	2	220500401	220500401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:220500401C>T	uc002vmp.3	+	14	2248	c.1979C>T	c.(1978-1980)TCT>TTT	p.S660F	SLC4A3_uc002vmo.3_Missense_Mutation_p.S687F|SLC4A3_uc010fwm.2_Missense_Mutation_p.S210F|SLC4A3_uc010fwn.1_Missense_Mutation_p.S169F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	660	Cytoplasmic.				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CCAGAACTGTCTTTGGAGTTG	0.637													7	11					0	0	0.004482	0	0
ALPI	248	broad.mit.edu	37	2	233323452	233323452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:233323452G>A	uc002vst.3	+	10	1371	c.1294G>A	c.(1294-1296)GAG>AAG	p.E432K	ALPI_uc002vsu.3_Missense_Mutation_p.E343K	NM_001631	NP_001622	P09923	PPBI_HUMAN	intestinal alkaline phosphatase precursor	432					phosphorylation	anchored to membrane|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding|protein binding			central_nervous_system(1)	1		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0449)|Lung NSC(271;0.132)		Epithelial(121;1.64e-16)|Kidney(3;9.71e-08)|KIRC - Kidney renal clear cell carcinoma(3;2.74e-06)|BRCA - Breast invasive adenocarcinoma(100;0.000763)|Lung(119;0.00564)|LUSC - Lung squamous cell carcinoma(224;0.00746)		GAATGAGAGCGAGAGCGGTGA	0.652													26	29					0	0	0.005443	0	0
GIGYF2	26058	broad.mit.edu	37	2	233620943	233620943	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:233620943C>T	uc002vti.3	+	8	615	c.278C>T	c.(277-279)TCC>TTC	p.S93F	GIGYF2_uc010zmj.1_Missense_Mutation_p.S93F|GIGYF2_uc002vtg.2_Missense_Mutation_p.S93F|GIGYF2_uc002vtj.3_Missense_Mutation_p.S93F|GIGYF2_uc002vtk.3_Missense_Mutation_p.S93F|GIGYF2_uc002vth.3_Missense_Mutation_p.S93F|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	93					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGAAACTTTTCCATGTCTGTA	0.378													13	21					0	0	0.013537	0	0
INPP5D	3635	broad.mit.edu	37	2	233995348	233995348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:233995348G>A	uc010zmo.1	+	5	808	c.655G>A	c.(655-657)GAG>AAG	p.E219K	INPP5D_uc010zmp.1_Missense_Mutation_p.E218K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	219					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GCTCTGCAAGGAGCTCTATGG	0.577													23	24					0	0	0.003954	0	0
AQP12B	653437	broad.mit.edu	37	2	241622081	241622081	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:241622081G>A	uc010fzj.2	-	1	237	c.174C>T	c.(172-174)GTC>GTT	p.V58V	AQP12B_uc002vzt.2_Intron	NM_001102467	NP_001095937	A6NM10	AQ12B_HUMAN	aquaporin 12B	46						integral to membrane	transporter activity				0		all_epithelial(40;1.71e-15)|Breast(86;2.14e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|all_neural(83;0.0459)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;2.2e-31)|all cancers(36;1.08e-28)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.52e-06)|Lung(119;0.00163)|LUSC - Lung squamous cell carcinoma(224;0.008)|Colorectal(34;0.0124)|COAD - Colon adenocarcinoma(134;0.0757)		GCCCGAGCTCGACCAGCGTCC	0.701													17	19					0	0	0.004007	0	0
AGXT	189	broad.mit.edu	37	2	241808730	241808730	+	Silent	SNP	G	A	A	rs145419586		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:241808730G>A	uc002waa.3	+	2	430	c.309G>A	c.(307-309)GGG>GGA	p.G103G	AGXT_uc010zoi.1_Silent_p.G103G	NM_000030	NP_000021	P21549	SPYA_HUMAN	alanine-glyoxylate aminotransferase	103					glyoxylate metabolic process|protein targeting to peroxisome	mitochondrial matrix|peroxisomal matrix	alanine-glyoxylate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|serine-pyruvate transaminase activity				0		all_epithelial(40;1.61e-15)|Breast(86;2.35e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0294)|Lung NSC(271;0.094)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;8.14e-32)|all cancers(36;4.77e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;4.88e-06)|Lung(119;0.000452)|LUSC - Lung squamous cell carcinoma(224;0.00415)|Colorectal(34;0.021)|COAD - Colon adenocarcinoma(134;0.15)	Glycine(DB00145)|L-Alanine(DB00160)|L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	TCCTGGTTGGGGCCAATGGCA	0.642													47	61					0	0	0.014410	0	0
SNED1	25992	broad.mit.edu	37	2	242002212	242002212	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:242002212C>T	uc002wah.1	+	17	2262	c.2262C>T	c.(2260-2262)ATC>ATT	p.I754I	SNED1_uc002wai.1_5'Flank|SNED1_uc002waj.1_5'Flank|SNED1_uc002wak.2_5'Flank	NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	754	EGF-like 11; calcium-binding (Potential).				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		TCTCAGAAATCGATGAGTGCC	0.547													11	7					0	0	0.010729	0	0
SNPH	9751	broad.mit.edu	37	20	1285634	1285634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:1285634G>A	uc002wes.2	+	6	657	c.421G>A	c.(421-423)GAG>AAG	p.E141K	SNPH_uc002wet.2_Missense_Mutation_p.E185K	NM_014723	NP_055538	O15079	SNPH_HUMAN	syntaphilin	141	Potential.				synaptic vesicle docking involved in exocytosis	cell junction|integral to membrane|synapse|synaptosome	syntaxin-1 binding			ovary(2)	2						GGCCCGAAAGGAGATCAAGCA	0.557													35	65					0	0	0.006230	0	0
FKBP1A	2280	broad.mit.edu	37	20	1298886	1298886	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:1298886G>C	uc010gac.2	-	5	579	c.301C>G	c.(301-303)CAG>GAG	p.Q101E	SDCBP2_uc002wev.3_Intron|SDCBP2_uc010zpq.1_Intron			P62942	FKB1A_HUMAN	Homo sapiens FKBP12-Exip2 mRNA for FK506 binding protein12, complete cds.	Error:Variant_position_missing_in_P62942_after_alignment					'de novo' protein folding|beta-amyloid formation|fibril organization|heart trabecula formation|negative regulation of protein phosphatase type 2B activity|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of protein binding|positive regulation of protein ubiquitination|protein maturation by protein folding|protein refolding|regulation of activin receptor signaling pathway|regulation of immune response|regulation of ryanodine-sensitive calcium-release channel activity|SMAD protein complex assembly|T cell activation|ventricular cardiac muscle tissue morphogenesis	axon|cytosol|sarcoplasmic reticulum membrane|terminal cisterna	activin binding|FK506 binding|peptidyl-prolyl cis-trans isomerase activity|signal transducer activity|SMAD binding|type I transforming growth factor beta receptor binding				0					Pimecrolimus(DB00337)|Sirolimus(DB00877)|Tacrolimus(DB00864)	AAGAAGGTCTGTTGAAATGGC	0.527													5	10					0	0	0.000602	0	0
SIRPB2	284759	broad.mit.edu	37	20	1459118	1459118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:1459118C>T	uc002wfg.2	-	3	814	c.586G>A	c.(586-588)GGA>AGA	p.G196R	SIRPB2_uc002wfh.3_Missense_Mutation_p.G98R|SIRPB2_uc010zpr.1_Missense_Mutation_p.G58R	NM_001122962	NP_001116434	Q5JXA9	SIRB2_HUMAN	signal-regulatory protein beta 2 isoform 1	196	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane					0						AGACCAGCTCCCTGGAACCAC	0.577													24	38					0	0	0.003330	0	0
LRRN4	164312	broad.mit.edu	37	20	6022301	6022301	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:6022301C>T	uc002wmo.2	-	5	1814	c.1590G>A	c.(1588-1590)GAG>GAA	p.E530E		NM_152611	NP_689824	Q8WUT4	LRRN4_HUMAN	leucine rich repeat neuronal 4 precursor	530	Extracellular (Potential).|Poly-Glu.					integral to membrane				skin(3)	3						TCCCTTCCTCCTCCTCACTGT	0.637													61	80					0	0	0.014410	0	0
PLCB1	23236	broad.mit.edu	37	20	8678363	8678363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:8678363G>A	uc002wnb.2	+	11	1103	c.1100G>A	c.(1099-1101)GGA>GAA	p.G367E	PLCB1_uc010zrb.1_Missense_Mutation_p.G266E|PLCB1_uc002wna.2_Missense_Mutation_p.G367E|PLCB1_uc002wnc.1_Missense_Mutation_p.G266E	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	367	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGCTGGAAGGGACGGACTGCA	0.488													55	47					0	0	0.014410	0	0
PLCB4	5332	broad.mit.edu	37	20	9417698	9417698	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:9417698G>A	uc002wnf.2	+	28	2763	c.2627G>A	c.(2626-2628)GGA>GAA	p.G876E	PLCB4_uc010gbw.1_Missense_Mutation_p.G876E|PLCB4_uc010gbx.2_Missense_Mutation_p.G888E|PLCB4_uc002wne.2_Missense_Mutation_p.G876E|PLCB4_uc002wnh.2_Missense_Mutation_p.G723E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	876					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GACAAGAAAGGAAAGGCCAAC	0.498													16	20					0	0	0.004007	0	0
BTBD3	22903	broad.mit.edu	37	20	11903873	11903874	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:11903873_11903874CC>TT	uc002wnz.2	+	4	1487_1488	c.1128_1129CC>TT	c.(1126-1131)CACCGT>CATTGT	p.R377C	BTBD3_uc002wny.2_Missense_Mutation_p.R316C|BTBD3_uc002woa.2_Missense_Mutation_p.R316C|BTBD3_uc010zrf.1_Missense_Mutation_p.R226C|BTBD3_uc010zrg.1_Missense_Mutation_p.R226C|BTBD3_uc010zrh.1_Missense_Mutation_p.R226C	NM_014962	NP_055777	Q9Y2F9	BTBD3_HUMAN	BTB/POZ domain containing protein 3 isoform a	377										ovary(2)|central_nervous_system(1)	3						AGCGCTGTCACCGTTTCCAGTC	0.51													20	30					0	0	0.004672	0	0
CSRP2BP	57325	broad.mit.edu	37	20	18142540	18142540	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:18142540A>T	uc002wqj.2	+	6	1381	c.759A>T	c.(757-759)GAA>GAT	p.E253D	CSRP2BP_uc002wqk.2_Missense_Mutation_p.E125D|CSRP2BP_uc010zru.1_Missense_Mutation_p.E124D	NM_020536	NP_065397	Q9H8E8	CSR2B_HUMAN	CSRP2 binding protein	253					histone H3 acetylation	Ada2/Gcn5/Ada3 transcription activator complex|cytoplasm	LIM domain binding|N-acetyltransferase activity			lung(3)|ovary(2)|skin(1)	6						ATCCTGTGGAATCTGCCATGG	0.418													49	77					0	0	0.014410	0	0
NKX2-2	4821	broad.mit.edu	37	20	21492579	21492579	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:21492579G>A	uc002wsi.2	-	2	1161	c.804C>T	c.(802-804)GCC>GCT	p.A268A		NM_002509	NP_002500	O95096	NKX22_HUMAN	NK2 transcription factor related, locus 2	268					brain development|positive regulation of sequence-specific DNA binding transcription factor activity	nucleus	chromatin binding|core promoter proximal region DNA binding|transcription coactivator activity			pancreas(1)|skin(1)	2						TCCACTGCTGGGCCTGGACCA	0.711													39	60					0	0	0.014410	0	0
NINL	22981	broad.mit.edu	37	20	25481560	25481560	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:25481560G>A	uc002wux.1	-	8	1022	c.948C>T	c.(946-948)GAC>GAT	p.D316D	NINL_uc010gdn.1_Silent_p.D316D|NINL_uc010gdo.1_Intron|NINL_uc010ztf.1_Silent_p.D332D	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	316					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						CAGAACCATCGTCAATGCTGG	0.582													23	28					0	0	0.014323	0	0
ZNF337	26152	broad.mit.edu	37	20	25657189	25657189	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:25657189G>A	uc002wva.2	-	4	1257	c.735C>T	c.(733-735)TTC>TTT	p.F245F	uc002wuz.2_RNA|ZNF337_uc010ztg.1_Silent_p.F213F|ZNF337_uc002wvb.2_Silent_p.F245F|ZNF337_uc002wvc.2_Silent_p.F245F	NM_015655	NP_056470	Q9Y3M9	ZN337_HUMAN	zinc finger protein 337	245	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CCTTGAGGCTGAAGCCTCGCC	0.527													33	47					0	0	0.010818	0	0
RALY	22913	broad.mit.edu	37	20	32661652	32661653	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:32661652_32661653CC>TT	uc002xab.2	+	5	655_656	c.357_358CC>TT	c.(355-360)TACCGG>TATTGG	p.R120W	RALY_uc010zui.1_Missense_Mutation_p.R120W|RALY_uc002xac.2_Intron|RALY_uc002xad.2_RNA|RALY_uc002xae.1_Missense_Mutation_p.R120W	NM_016732	NP_057951	Q9UKM9	RALY_HUMAN	RNA binding protein (autoantigenic,	120						catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(1)	1						ATGATTACTACCGGGACGACTT	0.431													23	32					0	0	0.004672	0	0
C20orf152	140894	broad.mit.edu	37	20	34571961	34571961	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:34571961C>T	uc002xes.1	+	5	621	c.465C>T	c.(463-465)TTC>TTT	p.F155F	C20orf152_uc002xer.1_Silent_p.F155F|C20orf152_uc010gfp.1_Intron			Q96M20	CT152_HUMAN	SubName: Full=C20orf152 protein;	155	cNMP.										0	Breast(12;0.00631)					GCTTTTATTTCATCTACCTGG	0.522													35	35					0	0	0.012213	0	0
MAFB	9935	broad.mit.edu	37	20	39316829	39316830	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:39316829_39316830AC>TT	uc002xji.2	-	1	1047_1048	c.661_662GT>AA	c.(661-663)GTG>AAG	p.V221K		NM_005461	NP_005452	Q9Y5Q3	MAFB_HUMAN	transcription factor MAFB	221					negative regulation of erythrocyte differentiation		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding				0		Myeloproliferative disorder(115;0.00878)				CAGCTCGCGCACGGACATGGAC	0.5			T	IGH@	MM								4	11					0	0	0.004672	0	0
CDH22	64405	broad.mit.edu	37	20	44841652	44841652	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:44841652G>A	uc002xrm.2	-	5	1415	c.1014C>T	c.(1012-1014)GCC>GCT	p.A338A	CDH22_uc010ghk.1_Silent_p.A338A|CDH22_uc002xrn.1_Silent_p.A89A	NM_021248	NP_067071	Q9UJ99	CAD22_HUMAN	cadherin 22 precursor	338	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|skin(1)	5		Myeloproliferative disorder(115;0.0122)				CTACGATGATGGCCTCCTGAG	0.607													14	31					0	0	0.004990	0	0
ELMO2	63916	broad.mit.edu	37	20	45000553	45000553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:45000553G>A	uc002xrt.1	-	17	1682	c.1472C>T	c.(1471-1473)TCT>TTT	p.S491F	ELMO2_uc010zxq.1_Missense_Mutation_p.S223F|ELMO2_uc002xrs.1_Missense_Mutation_p.S238F|ELMO2_uc002xru.1_Missense_Mutation_p.S491F|ELMO2_uc010zxr.1_Missense_Mutation_p.S503F|ELMO2_uc010zxs.1_Missense_Mutation_p.S308F|ELMO2_uc002xrv.1_Missense_Mutation_p.S210F	NM_133171	NP_573403	Q96JJ3	ELMO2_HUMAN	engulfment and cell motility 2	491					apoptosis|cell chemotaxis|phagocytosis	cytoskeleton|cytosol|membrane	lyase activity|receptor tyrosine kinase binding|SH3 domain binding			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CTGATCCAAAGAGTTGGGTTT	0.502													28	34					0	0	0.007291	0	0
SLC2A10	81031	broad.mit.edu	37	20	45354326	45354326	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:45354326C>T	uc002xsl.2	+	2	748	c.651C>T	c.(649-651)TCC>TCT	p.S217S		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	217	Cytoplasmic (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CACGGTACTCCTTTCTGGACC	0.632													44	53					0	0	0.011902	0	0
PTGIS	5740	broad.mit.edu	37	20	48129705	48129705	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:48129705C>T	uc002xut.2	-	8	1172	c.1118G>A	c.(1117-1119)CGA>CAA	p.R373Q	PTGIS_uc010zyi.1_Missense_Mutation_p.R234Q	NM_000961	NP_000952	Q16647	PTGIS_HUMAN	prostaglandin I2 synthase	373					hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|prostaglandin-I synthase activity			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(12;2.37e-05)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)		Phenylbutazone(DB00812)	GTTGAATTCTCGCCCGTCTGC	0.602													36	51					0	0	0.010771	0	0
SALL4	57167	broad.mit.edu	37	20	50418824	50418824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:50418824C>T	uc002xwh.3	-	1	225	c.124G>A	c.(124-126)GAG>AAG	p.E42K	SALL4_uc010gii.2_Missense_Mutation_p.E42K|SALL4_uc002xwi.3_Missense_Mutation_p.E42K	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	42					transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						TCACCCAGCTcccccgccgcg	0.622													11	14					0	0	0.010729	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871597	51871598	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:51871597_51871598GG>AA	uc002xwo.2	+	2	2556_2557	c.1600_1601GG>AA	c.(1600-1602)GGG>AAG	p.G534K		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	534					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			AGCCCAAAACGGGGCCCCCAGC	0.554													31	38					0	0	0.004672	0	0
TSHZ2	128553	broad.mit.edu	37	20	51871782	51871782	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:51871782C>T	uc002xwo.2	+	2	2741	c.1785C>T	c.(1783-1785)GCC>GCT	p.A595A		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	595					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CACACCTGGCCCCTTACACTC	0.517													45	39					0	0	0.010771	0	0
MC3R	4159	broad.mit.edu	37	20	54824280	54824281	+	Silent	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:54824280_54824281CC>TT	uc002xxb.2	+	1	493_494	c.381_382CC>TT	c.(379-384)TCCCTG>TCTTTG	p.127_128SL>SL		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	164_165	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			TCTGCATCTCCCTGGTGGCCTC	0.559													32	47					0	0	0.004672	0	0
ZNF831	128611	broad.mit.edu	37	20	57768375	57768375	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:57768375C>T	uc002yan.2	+	1	2301	c.2301C>T	c.(2299-2301)CCC>CCT	p.P767P		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	767						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					CACCTGGCCCCCTCAAAGGGG	0.642													11	20					0	0	0.010729	0	0
CDH4	1002	broad.mit.edu	37	20	60348150	60348150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:60348150G>A	uc002ybn.1	+	4	502	c.488G>A	c.(487-489)GGG>GAG	p.G163E	CDH4_uc002ybp.1_Missense_Mutation_p.G89E	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	163					adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			AACGCCAACGGGCTGAGGCGG	0.657													13	17					0	0	0.001855	0	0
C20orf20	55257	broad.mit.edu	37	20	61429957	61429957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:61429957C>T	uc002ydi.2	+	3	360	c.289C>T	c.(289-291)CCA>TCA	p.P97S		NM_018270	NP_060740	Q9NV56	MRGBP_HUMAN	MRG-binding protein	97					chromatin modification|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	H4/H2A histone acetyltransferase complex					0	Breast(26;3.65e-08)					TGAGATTCTTCCATTCCCGAA	0.458													47	86					0	0	0.014410	0	0
KCNQ2	3785	broad.mit.edu	37	20	62070013	62070013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr20:62070013C>T	uc002yey.1	-	7	1165	c.988G>A	c.(988-990)GAG>AAG	p.E330K	KCNQ2_uc002yez.1_Missense_Mutation_p.E330K|KCNQ2_uc002yfa.1_Missense_Mutation_p.E330K|KCNQ2_uc002yfb.1_Missense_Mutation_p.E330K|KCNQ2_uc011aax.1_Missense_Mutation_p.E330K|KCNQ2_uc002yfc.1_Missense_Mutation_p.E330K	NM_172107	NP_742105	O43526	KCNQ2_HUMAN	potassium voltage-gated channel KQT-like protein	330	Cytoplasmic (Potential).				axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)|ovary(1)	2	all_cancers(38;1.24e-11)		BRCA - Breast invasive adenocarcinoma(10;1.04e-05)		Amitriptyline(DB00321)	CGCCTCTTCTCAAAGTGCTTC	0.622													20	44					0	0	0.010504	0	0
ETS2	2114	broad.mit.edu	37	21	40190484	40190484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr21:40190484C>T	uc002yxg.2	+	7	921	c.725C>T	c.(724-726)TCT>TTT	p.S242F	ETS2_uc002yxf.2_Missense_Mutation_p.S382F	NM_005239	NP_005230	P15036	ETS2_HUMAN	v-ets erythroblastosis virus E26 oncogene	242					positive regulation of transcription, DNA-dependent|skeletal system development	nucleus	protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)|lung(1)|breast(1)|pancreas(1)	4		Prostate(19;6.33e-08)|all_epithelial(19;0.123)				TTCCCCAAGTCTCGGCTCAGC	0.547													122	160					0	0	0.014410	0	0
DSCAM	1826	broad.mit.edu	37	21	41648169	41648169	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr21:41648169A>C	uc002yyq.1	-	11	2663	c.2211T>G	c.(2209-2211)ATT>ATG	p.I737M	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	737	Extracellular (Potential).|Ig-like C2-type 8.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CATTTAGGGCAATTGGCTGGA	0.498													17	23					0	0	0.004990	0	0
FAM3B	54097	broad.mit.edu	37	21	42716438	42716438	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr21:42716438G>T	uc002yzb.1	+	4	469	c.323G>T	c.(322-324)GGA>GTA	p.G108V	FAM3B_uc002yza.2_RNA|FAM3B_uc002yzc.1_Missense_Mutation_p.G60V|FAM3B_uc002yzd.1_Missense_Mutation_p.G131V|FAM3B_uc011aeq.1_Missense_Mutation_p.G122V	NM_058186	NP_478066	P58499	FAM3B_HUMAN	family with sequence similarity 3, member B	108					apoptosis|insulin secretion	extracellular space	cytokine activity				0		Prostate(19;1.57e-07)|all_epithelial(19;0.0404)				GTTGCCAGAGGAATAAACATT	0.433													7	10					8.12818e-05	8.47778e-05	0.001984	1	0
ABCG1	9619	broad.mit.edu	37	21	43693414	43693414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr21:43693414G>A	uc002zaq.2	+	4	512	c.406G>A	c.(406-408)GAG>AAG	p.E136K	ABCG1_uc002zan.2_Missense_Mutation_p.E138K|ABCG1_uc002zam.2_Missense_Mutation_p.E114K|ABCG1_uc002zao.2_Missense_Mutation_p.E133K|ABCG1_uc002zap.2_Missense_Mutation_p.E136K|ABCG1_uc002zar.2_Missense_Mutation_p.E147K|ABCG1_uc011aev.1_Missense_Mutation_p.E147K	NM_004915	NP_004906	P45844	ABCG1_HUMAN	ATP-binding cassette sub-family G member 1	136	Cytoplasmic (Potential).|ABC transporter.				amyloid precursor protein catabolic process|cholesterol efflux|cholesterol homeostasis|cholesterol metabolic process|detection of hormone stimulus|high-density lipoprotein particle remodeling|intracellular cholesterol transport|lipoprotein metabolic process|low-density lipoprotein particle remodeling|negative regulation of cholesterol storage|negative regulation of macrophage derived foam cell differentiation|phospholipid efflux|phospholipid homeostasis|positive regulation of cholesterol biosynthetic process|regulation of cholesterol esterification|regulation of transcription, DNA-dependent|response to lipid|reverse cholesterol transport	endoplasmic reticulum membrane|external side of plasma membrane|Golgi membrane|recycling endosome	ADP binding|ATP binding|cholesterol transporter activity|glycoprotein transporter activity|phospholipid transporter activity|protein heterodimerization activity|protein homodimerization activity|sterol-transporting ATPase activity|toxin transporter activity			ovary(2)|central_nervous_system(1)	3					Adenosine triphosphate(DB00171)	GTTCTGCAGGGAGACGGGCAT	0.667													50	55					0	0	0.014410	0	0
UBASH3A	53347	broad.mit.edu	37	21	43863490	43863490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr21:43863490C>T	uc002zbe.2	+	13	1736	c.1700C>T	c.(1699-1701)GCG>GTG	p.A567V	UBASH3A_uc002zbf.2_Missense_Mutation_p.A529V|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Intron	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	567	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						AGGTGCACGGCGAGCATGGTG	0.587													4	17					0	0	0.009096	0	0
KRTAP10-11	386678	broad.mit.edu	37	21	46066504	46066504	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr21:46066504G>A	uc002zfr.3	+	1	174	c.129G>A	c.(127-129)CTG>CTA	p.L43L	C21orf29_uc002zfe.1_Intron|C21orf29_uc010gpv.1_Intron	NM_198692	NP_941965	P60412	KR10B_HUMAN	keratin associated protein 10-11	43	25 X 5 AA repeats of C-C-X(3).					keratin filament				ovary(1)	1						CCCCCTCCCTGAGCCTGGTCT	0.711													18	24					0	0	0.008871	0	0
IL17RA	23765	broad.mit.edu	37	22	17589371	17589371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:17589371C>T	uc002zly.2	+	13	1395	c.1262C>T	c.(1261-1263)TCG>TTG	p.S421L	IL17RA_uc010gqt.2_Missense_Mutation_p.S369L	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	421	Cytoplasmic (Potential).|SEFIR.				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		CAGGCCATCTCGGAGGCAGGA	0.637													31	42					0	0	0.010818	0	0
DGCR14	8220	broad.mit.edu	37	22	19121953	19121953	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:19121953G>A	uc002zou.2	-	10	1224	c.1187C>T	c.(1186-1188)CCA>CTA	p.P396L	DGCR14_uc002zot.2_Missense_Mutation_p.P317L|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	396					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					CTGTAGGGCTGGCGACATGGC	0.672													22	41					0	0	0.012319	0	0
GATSL3	652968	broad.mit.edu	37	22	30683443	30683443	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:30683443G>A	uc003ahd.2	-	3	421	c.291C>T	c.(289-291)ATC>ATT	p.I97I	GATSL3_uc003ahc.2_Silent_p.I97I|GATSL3_uc003ahe.2_Silent_p.I97I|GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Silent_p.I270I|GATSL3_uc010gvr.2_5'UTR|GATSL3_uc010gvs.2_5'UTR	NM_001037666	NP_001032755	Q8WTX7	GATL3_HUMAN	GATS protein-like 3	97										breast(1)	1						CCGAACGGGCGATCTTGGTGA	0.612											OREG0026457	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	30					0	0	0.009535	0	0
GAL3ST1	9514	broad.mit.edu	37	22	30951599	30951599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:30951599C>T	uc003aig.1	-	4	753	c.613G>A	c.(613-615)GAC>AAC	p.D205N	GAL3ST1_uc003aih.1_Missense_Mutation_p.D205N|GAL3ST1_uc003aii.1_Missense_Mutation_p.D205N|GAL3ST1_uc010gvz.1_Missense_Mutation_p.D205N	NM_004861	NP_004852	Q99999	G3ST1_HUMAN	galactose-3-O-sulfotransferase 1	205	Lumenal (Potential).				protein N-linked glycosylation	Golgi membrane|integral to plasma membrane|membrane fraction	galactosylceramide sulfotransferase activity				0						CCGTTGGGGTCGTAGTAGCGA	0.627													30	59					0	0	0.007291	0	0
OSBP2	23762	broad.mit.edu	37	22	31137152	31137152	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:31137152C>T	uc003aiy.1	+	2	753	c.649C>T	c.(649-651)CAG>TAG	p.Q217*	OSBP2_uc011ala.1_Nonsense_Mutation_p.Q52*|OSBP2_uc010gwc.1_Nonsense_Mutation_p.Q44*|OSBP2_uc003aix.1_Nonsense_Mutation_p.Q217*|OSBP2_uc011alb.1_Nonsense_Mutation_p.Q217*|OSBP2_uc003aiz.1_Nonsense_Mutation_p.Q217*	NM_030758	NP_110385	Q969R2	OSBP2_HUMAN	oxysterol binding protein 2 isoform a	217	PH.				lipid transport	membrane	lipid binding			breast(1)|skin(1)	2						CTACAGAAATCAGGGTGAAAT	0.532													11	11					0	0	0.013537	0	0
FOXRED2	80020	broad.mit.edu	37	22	36889754	36889754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:36889754G>A	uc003apn.3	-	7	1829	c.1721C>T	c.(1720-1722)CCG>CTG	p.P574L	FOXRED2_uc003apm.3_Missense_Mutation_p.P126L|FOXRED2_uc003apo.3_Missense_Mutation_p.P574L|FOXRED2_uc003app.3_Missense_Mutation_p.P574L	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	574					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						GTGCCCGATCGGGGCAGTCCA	0.557													35	39					0	0	0.003271	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37499418	37499418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:37499418C>T	uc003aqs.1	-	2	181	c.67G>A	c.(67-69)GGG>AGG	p.G23R	TMPRSS6_uc003aqt.1_Missense_Mutation_p.G14R|TMPRSS6_uc003aqu.2_Missense_Mutation_p.G14R	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	23	Cytoplasmic (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						CCTCCGTCCCCCTGCCCGCCA	0.657													68	82					0	0	0.014410	0	0
TRIOBP	11078	broad.mit.edu	37	22	38119243	38119243	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:38119243G>C	uc003atr.2	+	7	951	c.680G>C	c.(679-681)GGA>GCA	p.G227A	TRIOBP_uc003atu.2_Missense_Mutation_p.G55A|TRIOBP_uc003atq.1_Missense_Mutation_p.G227A|TRIOBP_uc003ats.1_Missense_Mutation_p.G55A	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	227					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					AGGCTCCGGGGAGAAAGCGGG	0.647													9	12					0	0	0.004482	0	0
MGAT3	4248	broad.mit.edu	37	22	39884257	39884257	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:39884257C>T	uc003axv.3	+	2	1144	c.905C>T	c.(904-906)TCG>TTG	p.S302L	MGAT3_uc010gxy.2_Missense_Mutation_p.S302L	NM_002409	NP_002400	Q09327	MGAT3_HUMAN	mannosyl (beta-1,4-)-glycoprotein	302	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity				0	Melanoma(58;0.04)					GACGGCGTCTCGCGGCTGCGC	0.662													56	53					0	0	0.014410	0	0
EP300	2033	broad.mit.edu	37	22	41572330	41572331	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:41572330_41572331CC>TT	uc003azl.3	+	30	5254_5255	c.4859_4860CC>TT	c.(4858-4860)CCC>CTT	p.P1620L		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1620	Binding region for E1A adenovirus.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						CCTCTCATCCCCTGCGATCTGA	0.55			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				39	75					0	0	0.004672	0	0
L3MBTL2	83746	broad.mit.edu	37	22	41620754	41620754	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:41620754C>T	uc003azo.2	+	10	1254	c.1200C>T	c.(1198-1200)CAC>CAT	p.H400H	L3MBTL2_uc010gyi.1_Silent_p.H309H|L3MBTL2_uc003azn.2_RNA	NM_031488	NP_113676	Q969R5	LMBL2_HUMAN	l(3)mbt-like 2	400	MBT 3.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	methylated histone residue binding|transcription corepressor activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3						TGGCCCATCACCCCACCTTCC	0.572													19	22					0	0	0.002780	0	0
KIAA1644	85352	broad.mit.edu	37	22	44681538	44681538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:44681538C>T	uc003bet.2	-	4	502	c.369G>A	c.(367-369)ATG>ATA	p.M123I		NM_001099294	NP_001092764	Q3SXP7	K1644_HUMAN	hypothetical protein LOC85352 precursor	123	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1		all_neural(38;0.0762)|Ovarian(80;0.105)|Glioma(61;0.222)				TGTCGTAGTTCATTGCCGAGT	0.552													64	82					0	0	0.014410	0	0
RIBC2	26150	broad.mit.edu	37	22	45822019	45822019	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr22:45822019C>T	uc011aqs.1	+	6	1061	c.852C>T	c.(850-852)ATC>ATT	p.I284I		NM_015653	NP_056468	Q9H4K1	RIBC2_HUMAN	RIB43A domain with coiled-coils 2	216											0		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)		TGGAGCAGATCCGCCTAGTCC	0.637													20	17					0	0	0.010504	0	0
CNTN4	152330	broad.mit.edu	37	3	2928860	2928860	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:2928860G>A	uc003bpc.2	+	9	1113	c.892G>A	c.(892-894)GAA>AAA	p.E298K	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.E298K	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	298	Ig-like C2-type 3.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		ATGTGTAGCTGAAAATTCCAG	0.378													7	17					0	0	0.003080	0	0
IL5RA	3568	broad.mit.edu	37	3	3137086	3137086	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:3137086C>T	uc011ask.1	-	9	1396	c.752G>A	c.(751-753)GGA>GAA	p.G251E	IL5RA_uc010hbq.2_Intron|IL5RA_uc010hbr.2_Intron|IL5RA_uc010hbs.2_Missense_Mutation_p.G251E|IL5RA_uc011asl.1_Missense_Mutation_p.G251E|IL5RA_uc011asm.1_Missense_Mutation_p.G251E|IL5RA_uc010hbt.2_Missense_Mutation_p.G251E|IL5RA_uc011asn.1_Missense_Mutation_p.G251E|IL5RA_uc010hbu.2_Missense_Mutation_p.G251E	NM_000564	NP_000555	Q01344	IL5RA_HUMAN	interleukin 5 receptor, alpha isoform 1	251	Extracellular (Potential).				cell proliferation	extracellular space|integral to membrane|plasma membrane	interleukin-5 receptor activity			ovary(1)	1				Epithelial(13;0.00278)|all cancers(10;0.00809)|OV - Ovarian serous cystadenocarcinoma(96;0.00944)		GAGACGAGTTCCTTCAATCTC	0.358													17	19					0	0	0.007413	0	0
LHFPL4	375323	broad.mit.edu	37	3	9594046	9594046	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:9594046G>A	uc003bry.2	-	2	604	c.318C>T	c.(316-318)ATC>ATT	p.I106I		NM_198560	NP_940962	Q7Z7J7	LHPL4_HUMAN	lipoma HMGIC fusion partner-like 4	106	Helical; (Potential).					integral to membrane				ovary(2)|skin(1)	3	Medulloblastoma(99;0.227)					TGCAGCCGAGGATCAGCACCA	0.612											OREG0005683	type=TRANSCRIPTION FACTOR BINDING SITE|Gene=LHFPL4|TFbs=REST|Dataset=NRSF/REST ChIPSeq sites|EvidenceSubtype=Chromatin immunoprecipitation with tag sequencing (ChIP-TS)	22	25					0	0	0.003954	0	0
CPNE9	151835	broad.mit.edu	37	3	9771260	9771260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:9771260G>A	uc003bsd.2	+	20	1717	c.1546G>A	c.(1546-1548)GAT>AAT	p.D516N	BRPF1_uc003bse.2_5'Flank|BRPF1_uc003bsf.2_5'Flank|BRPF1_uc003bsg.2_5'Flank|BRPF1_uc011ati.1_5'Flank	NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	516										ovary(2)	2	Medulloblastoma(99;0.227)					ACTGGCCAAGGATGTGCTGGC	0.622													34	35					0	0	0.003755	0	0
IL17RE	132014	broad.mit.edu	37	3	9945733	9945733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:9945733C>T	uc003btu.2	+	4	283	c.166C>T	c.(166-168)CCT>TCT	p.P56S	CIDEC_uc003bto.2_Intron|IL17RE_uc003btv.2_Missense_Mutation_p.P56S|IL17RE_uc011atn.1_Intron|IL17RE_uc003btw.2_Missense_Mutation_p.P56S|IL17RE_uc003btx.2_Intron|IL17RE_uc010hcq.2_Missense_Mutation_p.P56S|IL17RE_uc003bty.2_RNA	NM_153483	NP_705616	Q8NFR9	I17RE_HUMAN	interleukin 17 receptor E isoform 1	56	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane	receptor activity			central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(96;5.34e-64)		TGCCTATATCCCTTGCCGCAC	0.498													94	146					0	0	0.014410	0	0
SLC6A1	6529	broad.mit.edu	37	3	11067167	11067167	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:11067167C>T	uc010hdq.2	+	8	1158	c.747C>T	c.(745-747)ATC>ATT	p.I249I		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	249	Helical; Name=5; (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	ACCCCTACATCATGCTGATCA	0.572													19	27					0	0	0.012319	0	0
RAF1	5894	broad.mit.edu	37	3	12645699	12645699	+	Missense_Mutation	SNP	G	A	A	rs80338796		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:12645699G>A	uc003bxf.3	-	7	1185	c.770C>T	c.(769-771)TCG>TTG	p.S257L	RAF1_uc011aut.1_Missense_Mutation_p.S42L|RAF1_uc011auu.1_Missense_Mutation_p.S175L	NM_002880	NP_002871	P04049	RAF1_HUMAN	v-raf-1 murine leukemia viral oncogene homolog	257			S -> L (in NS5 and LEOPARD2; shows in vitro greater kinase activity and enhanced ERK activation than wild-type).		activation of MAPKK activity|apoptosis|axon guidance|cell proliferation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|negative regulation of apoptosis|negative regulation of cell proliferation|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of peptidyl-serine phosphorylation|Ras protein signal transduction|synaptic transmission	cytosol|mitochondrial outer membrane|plasma membrane	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|receptor signaling protein activity		ESRP1/RAF1(4)|SRGAP3/RAF1(4)	central_nervous_system(4)|prostate(4)|lung(2)|upper_aerodigestive_tract(1)|stomach(1)|liver(1)|ovary(1)	14					Sorafenib(DB00398)	TGTGGATGTCGACCTCTGCCT	0.527			T	SRGAP3	pilocytic astrocytoma				Noonan_syndrome				46	51					0	0	0.011902	0	0
NUP210	23225	broad.mit.edu	37	3	13377097	13377097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:13377097G>A	uc003bxv.1	-	28	3783	c.3700C>T	c.(3700-3702)CCG>TCG	p.P1234S		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1234	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					TACTGTGACGGGAGTCGGATC	0.612													18	35					0	0	0.008871	0	0
GRIP2	80852	broad.mit.edu	37	3	14554361	14554361	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:14554361G>A	uc011avi.1	-	15	1938	c.1938C>T	c.(1936-1938)TCC>TCT	p.S646S	GRIP2_uc010heh.2_RNA|GRIP2_uc011avh.1_Silent_p.S177S	NM_001080423	NP_001073892	Q9C0E4	GRIP2_HUMAN	glutamate receptor interacting protein 2	548					synaptic transmission	cytosol|plasma membrane	protein binding			pancreas(1)	1						TTGGGATGACGGACTCTGGGG	0.567													23	39					0	0	0.003954	0	0
PLCL2	23228	broad.mit.edu	37	3	17053118	17053118	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:17053118C>T	uc011awc.1	+	5	2361	c.2256C>T	c.(2254-2256)ATC>ATT	p.I752I	PLCL2_uc011awd.1_Silent_p.I634I	NM_001144382	NP_001137854	Q9UPR0	PLCL2_HUMAN	phospholipase C-like 2 isoform 1	760	C2.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			skin(2)|ovary(1)|lung(1)	4						ACATTAAAATCATCAGTGGGC	0.488													12	18					0	0	0.010729	0	0
NR1D2	9975	broad.mit.edu	37	3	23997550	23997550	+	Silent	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:23997550G>T	uc003ccs.2	+	3	625	c.306G>T	c.(304-306)CTG>CTT	p.L102L	NR1D2_uc010hfd.2_RNA|NR1D2_uc011awk.1_Silent_p.L27L	NM_005126	NP_005117	Q14995	NR1D2_HUMAN	nuclear receptor subfamily 1, group D, member 2	102	Nuclear receptor.				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			urinary_tract(1)|kidney(1)|skin(1)	3						TGGTTCTACTGTGTAAAGTCT	0.398													47	77					2.73381e-35	2.93828e-35	0.014410	1	0
ZCWPW2	152098	broad.mit.edu	37	3	28476704	28476704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:28476704C>T	uc003ceh.2	+	4	604	c.436C>T	c.(436-438)CAT>TAT	p.H146Y	ZCWPW2_uc003cei.2_Missense_Mutation_p.H146Y|ZCWPW2_uc010hfo.2_5'UTR	NM_001040432	NP_001035522	Q504Y3	ZCPW2_HUMAN	zinc finger, CW type with PWWP domain 2	146	PWWP.						zinc ion binding			ovary(2)	2						GGGCGATCCCCATTCAAGATC	0.373													30	46					0	0	0.009535	0	0
CCR4	1233	broad.mit.edu	37	3	32995250	32995250	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:32995250G>A	uc003cfg.1	+	2	504	c.336G>A	c.(334-336)ATG>ATA	p.M112I		NM_005508	NP_005499	P51679	CCR4_HUMAN	chemokine (C-C motif) receptor 4	112	Helical; Name=3; (Potential).				chemotaxis|elevation of cytosolic calcium ion concentration|immune response|inflammatory response	integral to plasma membrane				lung(1)	1						TGTGCAAGATGATTTCCTGGA	0.478													95	144					0	0	0.014410	0	0
VILL	50853	broad.mit.edu	37	3	38038579	38038579	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:38038579C>T	uc003chj.2	+	6	748	c.462C>T	c.(460-462)TCC>TCT	p.S154S	VILL_uc003chk.1_Silent_p.S154S|VILL_uc003chl.2_Silent_p.S154S|VILL_uc010hgu.2_5'UTR	NM_015873	NP_056957	O15195	VILL_HUMAN	villin-like protein	154	Gelsolin-like 2.				actin filament capping|cytoskeleton organization	actin cytoskeleton	actin binding|structural constituent of cytoskeleton				0				KIRC - Kidney renal clear cell carcinoma(284;0.0525)|Kidney(284;0.0661)		TGGAGCTCTCCTGGAACAGCT	0.542											OREG0015474	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	58					0	0	0.012213	0	0
SCN5A	6331	broad.mit.edu	37	3	38592469	38592469	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:38592469C>T	uc003cio.2	-	28	5588	c.5394G>A	c.(5392-5394)TGG>TGA	p.W1798*	SCN5A_uc003cin.2_Nonsense_Mutation_p.W1797*|SCN5A_uc003cil.3_Nonsense_Mutation_p.W1798*|SCN5A_uc010hhi.2_Nonsense_Mutation_p.W1780*|SCN5A_uc010hhk.2_Nonsense_Mutation_p.W1765*|SCN5A_uc011ayr.1_Nonsense_Mutation_p.W1744*	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1798					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	CAAATTTCTCCCAGATCTCAT	0.532													34	27					0	0	0.012213	0	0
SCN10A	6336	broad.mit.edu	37	3	38739366	38739366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:38739366C>T	uc003ciq.2	-	27	5345	c.5345G>A	c.(5344-5346)CGA>CAA	p.R1782Q		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1782					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CAGTATATTTCGATTGGGTTT	0.473													19	32					0	0	0.006122	0	0
SCN11A	11280	broad.mit.edu	37	3	38926777	38926778	+	Splice_Site	DNP	AC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:38926777_38926778AC>TT	uc011ays.1	-	17	3263	c.3064_splice	c.e17+1	p.G1022_splice	SCN11A_uc010hhn.1_Splice_Site_p.G100_splice	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha						response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	ACTGCCACTTACCTTTGGGCAA	0.411													16	15					0	0	0.004672	0	0
SCN11A	11280	broad.mit.edu	37	3	38936125	38936125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:38936125C>T	uc011ays.1	-	15	2933	c.2734G>A	c.(2734-2736)GAT>AAT	p.D912N	SCN11A_uc010hhn.1_Missense_Mutation_p.D28N	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	912					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	CAAGTCCAATCATGCCTGACG	0.507													68	79					0	0	0.014410	0	0
C3orf39	84892	broad.mit.edu	37	3	43122023	43122023	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:43122023G>A	uc003cmq.1	-	2	1042	c.901C>T	c.(901-903)CTG>TTG	p.L301L	C3orf39_uc003cmr.1_Silent_p.L301L	NM_032806	NP_116195	Q8NAT1	AGO61_HUMAN	glycosyltransferase precursor	301						extracellular region	transferase activity, transferring glycosyl groups			ovary(1)|skin(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0571)|Kidney(284;0.0718)		GCCTCATTCAGAATGAGTCTG	0.552													25	22					0	0	0.003330	0	0
SLC6A20	54716	broad.mit.edu	37	3	45823701	45823701	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:45823701G>A	uc011bai.1	-	2	260	c.136C>T	c.(136-138)CCC>TCC	p.P46S	SLC6A20_uc011baj.1_Missense_Mutation_p.P46S	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	46	Helical; Name=2; (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		ATGATGTAGGGGACCAGGAAA	0.552													10	27					0	0	0.008291	0	0
SCAP	22937	broad.mit.edu	37	3	47470026	47470026	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:47470026G>A	uc003crh.1	-	4	642	c.387C>T	c.(385-387)ATC>ATT	p.I129I	SCAP_uc011baz.1_Intron|SCAP_uc003crg.2_Intron	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	129	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		CGTGGTTCCGGATCTCCTCCA	0.527													68	80					0	0	0.014410	0	0
USP4	7375	broad.mit.edu	37	3	49348150	49348150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:49348150G>A	uc003cwq.2	-	8	936	c.857C>T	c.(856-858)TCG>TTG	p.S286L	USP4_uc003cwo.2_Missense_Mutation_p.S16L|USP4_uc003cwp.2_Missense_Mutation_p.S16L|USP4_uc003cwr.2_Missense_Mutation_p.S239L	NM_003363	NP_003354	Q13107	UBP4_HUMAN	ubiquitin specific protease 4 isoform a	286					negative regulation of protein ubiquitination|protein deubiquitination|protein localization at cell surface|regulation of protein stability|ubiquitin-dependent protein catabolic process	lysosome|nucleus	adenosine receptor binding|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(2)|urinary_tract(1)|lung(1)	4		Ovarian(412;0.00308)|Myeloproliferative disorder(1037;0.0255)|Hepatocellular(537;0.121)		OV - Ovarian serous cystadenocarcinoma(275;4.74e-26)|Kidney(197;2.22e-07)|KIRC - Kidney renal clear cell carcinoma(197;5.14e-06)|BRCA - Breast invasive adenocarcinoma(193;9.46e-05)		ACAATTATACGAAGCAGAAAA	0.468													22	20					0	0	0.002780	0	0
BSN	8927	broad.mit.edu	37	3	49691891	49691891	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:49691891C>T	uc003cxe.3	+	5	5016	c.4902C>T	c.(4900-4902)GCC>GCT	p.A1634A		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1634					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GCTGGGGTGCCCTCCCTGCTG	0.657													11	16					0	0	0.010729	0	0
MON1A	84315	broad.mit.edu	37	3	49950665	49950665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:49950665C>T	uc003cxz.2	-	2	532	c.406G>A	c.(406-408)GGA>AGA	p.G136R	MON1A_uc003cya.2_Missense_Mutation_p.G136R|MON1A_uc003cyb.2_Missense_Mutation_p.G136R|MON1A_uc010hlb.2_Missense_Mutation_p.G136R	NM_032355	NP_115731	Q86VX9	MON1A_HUMAN	MON1 homolog A isoform a	39							protein binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		GGCTCCATTCCCTGGGCCATT	0.547													27	47					0	0	0.003954	0	0
DOCK3	1795	broad.mit.edu	37	3	51264789	51264789	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:51264789C>T	uc011bds.1	+	16	1476	c.1453C>T	c.(1453-1455)CCT>TCT	p.P485S		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	485	DHR-1.					cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CAGTAATAGTCCTCGCTGGGG	0.468													52	61					0	0	0.014410	0	0
STAB1	23166	broad.mit.edu	37	3	52556346	52556346	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:52556346A>G	uc003dej.2	+	60	6540	c.6466A>G	c.(6466-6468)AAC>GAC	p.N2156D	STAB1_uc003dek.1_Missense_Mutation_p.N171D|STAB1_uc003del.2_Missense_Mutation_p.N43D	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	2156	EGF-like 16.|Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CCAACCCCAGAACACACGGCG	0.652													23	34					0	0	0.014323	0	0
PBRM1	55193	broad.mit.edu	37	3	52620643	52620643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:52620643C>T	uc003des.2	-	20	3197	c.3185G>A	c.(3184-3186)CGG>CAG	p.R1062Q	PBRM1_uc003dex.2_RNA|PBRM1_uc003deq.2_Missense_Mutation_p.R1062Q|PBRM1_uc003der.2_Missense_Mutation_p.R1030Q|PBRM1_uc003det.2_Missense_Mutation_p.R1077Q|PBRM1_uc003deu.2_Missense_Mutation_p.R1077Q|PBRM1_uc003dev.2_RNA|PBRM1_uc003dew.2_Missense_Mutation_p.R1062Q|PBRM1_uc010hmk.1_Missense_Mutation_p.R1037Q|PBRM1_uc003dey.2_Missense_Mutation_p.R1037Q|PBRM1_uc003dez.1_Missense_Mutation_p.R1061Q|PBRM1_uc003dfb.1_Missense_Mutation_p.R974Q|PBRM1_uc003dfa.1_Missense_Mutation_p.R408Q	NM_181042	NP_060635	Q86U86	PB1_HUMAN	polybromo 1 isoform 4	1062	BAH 1.				chromatin remodeling|mitosis|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear chromosome	chromatin binding|DNA binding|protein binding			kidney(136)|breast(4)	140				BRCA - Breast invasive adenocarcinoma(193;1.8e-05)|Kidney(197;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00122)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)		GGCAGAATACCGTGATTCACA	0.448			Mis|N|F|S|D|O		clear cell renal carcinoma|breast								25	34					0	0	0.003330	0	0
CACNA1D	776	broad.mit.edu	37	3	53814129	53814129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:53814129G>A	uc003dgv.3	+	38	4827	c.4664G>A	c.(4663-4665)CGA>CAA	p.R1555Q	CACNA1D_uc003dgu.3_Missense_Mutation_p.R1575Q|CACNA1D_uc003dgy.3_Missense_Mutation_p.R1540Q|CACNA1D_uc003dgw.3_Missense_Mutation_p.R1222Q|CACNA1D_uc003dgx.1_Missense_Mutation_p.R731Q	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	1555	Cytoplasmic (Potential).				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	GCTTTGGTTCGAACGGCTCTT	0.468													33	32					0	0	0.003755	0	0
CHDH	55349	broad.mit.edu	37	3	53857356	53857356	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:53857356C>T	uc003dgz.2	-	3	1120	c.680G>A	c.(679-681)TGG>TAG	p.W227*		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	227					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	CATGTCCATCCAGCCGAAGCC	0.607													6	11					0	0	0.001168	0	0
CACNA2D3	55799	broad.mit.edu	37	3	55038833	55038833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:55038833G>A	uc003dhf.2	+	32	2782	c.2734G>A	c.(2734-2736)GAA>AAA	p.E912K	CACNA2D3_uc003dhg.1_Missense_Mutation_p.E818K|CACNA2D3_uc003dhh.1_RNA	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	912	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		AGCCAACAAGGAAAGCAGCGA	0.458													29	44					0	0	0.003271	0	0
ERC2	26059	broad.mit.edu	37	3	56330089	56330089	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:56330089C>T	uc003dhr.1	-	3	1288	c.1032G>A	c.(1030-1032)GTG>GTA	p.V344V		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	344	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GATCTAAAATCACTTCCAAGT	0.428													36	53					0	0	0.013726	0	0
DNAH12	201625	broad.mit.edu	37	3	57488120	57488120	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:57488120C>T	uc003dit.2	-	10	1354	c.1173G>A	c.(1171-1173)TGG>TGA	p.W391*	DNAH12_uc003diu.2_Nonsense_Mutation_p.W391*	NM_178504	NP_848599	Q6ZR08	DYH12_HUMAN	dynein heavy chain domain 2 isoform 1	391	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			pancreas(1)|skin(1)	2						TATCAACAGCCCAGTGTAACA	0.393													21	41					0	0	0.010504	0	0
SNTN	132203	broad.mit.edu	37	3	63638372	63638372	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:63638372C>T	uc003dlr.2	+	1	29	c.9C>T	c.(7-9)GGC>GGT	p.G3G		NM_001080537	NP_001074006	A6NMZ2	SNTAN_HUMAN	sentan, cilia apical structure protein	3						cilium	calcium ion binding			ovary(1)	1						GAATGGGTGGCTGTATGCACA	0.478													9	23					0	0	0.004482	0	0
THOC7	80145	broad.mit.edu	37	3	63823682	63823682	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:63823682G>A	uc003dlt.3	-	4	453	c.322C>T	c.(322-324)CAA>TAA	p.Q108*	C3orf49_uc003dls.3_Intron|THOC7_uc003dlu.3_Nonsense_Mutation_p.Q45*	NM_025075	NP_079351	Q6I9Y2	THOC7_HUMAN	Ngg1 interacting factor 3 like 1 binding protein	108	Potential.|Interaction with THOC5.|Interaction with NIF3L1.				intronless viral mRNA export from host nucleus|mRNA processing|RNA splicing	cytoplasm|THO complex part of transcription export complex	protein binding|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(55;0.000439)|Kidney(15;0.00194)|KIRC - Kidney renal clear cell carcinoma(15;0.00218)		CGTTTTGCTTGAAGAATTTGC	0.318													22	38					0	0	0.003954	0	0
LRIG1	26018	broad.mit.edu	37	3	66432709	66432709	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:66432709T>A	uc003dmx.2	-	16	2619	c.2605A>T	c.(2605-2607)ATT>TTT	p.I869F	SLC25A26_uc011bft.1_Intron|LRIG1_uc011bfu.1_Missense_Mutation_p.I489F|LRIG1_uc003dmw.2_Missense_Mutation_p.I535F|LRIG1_uc010hnz.2_Missense_Mutation_p.I585F|LRIG1_uc010hoa.2_Missense_Mutation_p.I846F	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	869	Cytoplasmic (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		TTGCTCTCAATGTGCCCATTG	0.572													43	60					0	0	0.011902	0	0
LRIG1	26018	broad.mit.edu	37	3	66433778	66433779	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:66433778_66433779CC>TT	uc003dmx.2	-	15	2132_2133	c.2118_2119GG>AA	c.(2116-2121)GTGGGA>GTAAGA	p.G707R	SLC25A26_uc011bft.1_Intron|LRIG1_uc011bfu.1_Missense_Mutation_p.G327R|LRIG1_uc003dmw.2_Missense_Mutation_p.G373R|LRIG1_uc010hnz.2_Missense_Mutation_p.G423R|LRIG1_uc010hoa.2_Missense_Mutation_p.G684R	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	707	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		ACTGTTTCTCCCACAGATACCA	0.604													35	52					0	0	0.004672	0	0
KBTBD8	84541	broad.mit.edu	37	3	67058398	67058398	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:67058398C>T	uc003dmy.2	+	4	1448	c.1395C>T	c.(1393-1395)ACC>ACT	p.T465T	KBTBD8_uc011bfv.1_Silent_p.T23T	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	465	Kelch 3.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		GTTTCTTAACCCCCATGACTG	0.363													33	46					0	0	0.006230	0	0
EPHA3	2042	broad.mit.edu	37	3	89528570	89528570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:89528570C>T	uc003dqy.2	+	17	3095	c.2870C>T	c.(2869-2871)ACC>ATC	p.T957I	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	957	Cytoplasmic (Potential).|SAM.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		GTTGGTGTCACCGTGGTTGGG	0.413										TSP Lung(6;0.00050)			24	39					0	0	0.005443	0	0
PROS1	5627	broad.mit.edu	37	3	93605254	93605254	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:93605254C>G	uc003drb.3	-	11	1590	c.1249G>C	c.(1249-1251)GAA>CAA	p.E417Q	PROS1_uc010hoo.2_Missense_Mutation_p.E286Q|PROS1_uc003dqz.3_Missense_Mutation_p.E286Q	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	417	Laminin G-like 1.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	AATCCATTTTCCGGCTTAAAA	0.373													59	110					0	0	0.014410	0	0
PROS1	5627	broad.mit.edu	37	3	93615439	93615439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:93615439G>A	uc003drb.3	-	9	1287	c.946C>T	c.(946-948)CGT>TGT	p.R316C	PROS1_uc010hoo.2_Missense_Mutation_p.R185C|PROS1_uc003dqz.3_Missense_Mutation_p.R185C	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	316	Laminin G-like 1.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TCTGGCAAACGAAATTTTAAA	0.408													33	54					0	0	0.013726	0	0
OR5H1	26341	broad.mit.edu	37	3	97852045	97852045	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:97852045C>T	uc011bgt.1	+	1	504	c.504C>T	c.(502-504)TTC>TTT	p.F168F		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						GACTAACCTTCTGTAACTCCA	0.328													21	35					0	0	0.009535	0	0
OR5H15	403274	broad.mit.edu	37	3	97887907	97887907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:97887907C>T	uc011bgu.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						GGCATATGATCGCTATGTAGC	0.378													40	56					0	0	0.009718	0	0
OR5H15	403274	broad.mit.edu	37	3	97888259	97888259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:97888259C>T	uc011bgu.1	+	1	716	c.716C>T	c.(715-717)TCC>TTC	p.S239F		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	239	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAAGCCTTTTCCACCTGTGGA	0.413													24	36					0	0	0.003330	0	0
NIT2	56954	broad.mit.edu	37	3	100073618	100073618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:100073618G>A	uc003dtv.2	+	9	760	c.686G>A	c.(685-687)GGG>GAG	p.G229E		NM_020202	NP_064587	Q9NQR4	NIT2_HUMAN	nitrilase family, member 2	229	CN hydrolase.				nitrogen compound metabolic process		omega-amidase activity			ovary(1)	1						TTTTTCAGGGGGGAGGTTCTA	0.428													26	29					0	0	0.004656	0	0
GPR128	84873	broad.mit.edu	37	3	100368614	100368614	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:100368614G>T	uc003duc.2	+	11	1610	c.1342G>T	c.(1342-1344)GGT>TGT	p.G448C	GPR128_uc011bhc.1_Missense_Mutation_p.G149C	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	448	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						GTCTGTTACTGGTCTGGCTCT	0.368													4	62					1.23904e-05	1.29698e-05	0.000602	1	0
MYH15	22989	broad.mit.edu	37	3	108133252	108133252	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:108133252G>A	uc003dxa.1	-	31	4089	c.4032C>T	c.(4030-4032)GCC>GCT	p.A1344A		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	1344	Potential.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						CCTTCTGCAGGGCATGGGCCA	0.488													16	19					0	0	0.004007	0	0
PHLDB2	90102	broad.mit.edu	37	3	111658470	111658470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:111658470C>T	uc010hqa.2	+	7	2690	c.2279C>T	c.(2278-2280)TCT>TTT	p.S760F	PHLDB2_uc003dyc.2_Missense_Mutation_p.S744F|PHLDB2_uc003dyd.2_Missense_Mutation_p.S717F|PHLDB2_uc003dyg.2_Missense_Mutation_p.S760F|PHLDB2_uc003dyh.2_Missense_Mutation_p.S717F|PHLDB2_uc003dyi.2_Missense_Mutation_p.S346F	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	760	Potential.					cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						AACATCGTTTCTAGAAAGGTA	0.378													6	20					0	0	0.008291	0	0
C3orf17	25871	broad.mit.edu	37	3	112729989	112729989	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:112729989G>A	uc003dzr.2	-	6	877	c.816C>T	c.(814-816)ACC>ACT	p.T272T	GTPBP8_uc011bhy.1_Intron|C3orf17_uc003dzq.2_5'Flank|C3orf17_uc011bhz.1_Intron|C3orf17_uc010hqh.2_Intron|C3orf17_uc003dzt.2_Silent_p.T175T|C3orf17_uc003dzs.2_Silent_p.T136T|C3orf17_uc010hqg.2_Silent_p.T97T|C3orf17_uc011bia.1_Silent_p.T69T|C3orf17_uc003dzu.2_Silent_p.T201T|C3orf17_uc011bib.1_Silent_p.T161T|C3orf17_uc011bic.1_Silent_p.T105T|C3orf17_uc011bid.1_RNA	NM_015412	NP_056227	Q6NW34	CC017_HUMAN	hypothetical protein LOC25871	272						integral to membrane					0						TTCCAAGCAAGGTTTCTTCAC	0.323													15	23					0	0	0.002450	0	0
LSAMP	4045	broad.mit.edu	37	3	115738374	115738374	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:115738374G>T	uc003ebt.2	-	3	1002	c.502C>A	c.(502-504)CTT>ATT	p.L168I	LSAMP_uc011bis.1_Missense_Mutation_p.L168I	NM_002338	NP_002329	Q13449	LSAMP_HUMAN	limbic system-associated membrane protein	168	Ig-like C2-type 2.				cell adhesion|nervous system development	anchored to membrane|plasma membrane					0		all_cancers(1;0.00189)|all_epithelial(1;0.0366)|Myeloproliferative disorder(1037;0.17)|all_neural(597;0.208)|Lung NSC(201;0.215)		GBM - Glioblastoma multiforme(114;0.00117)|LUSC - Lung squamous cell carcinoma(41;0.0407)|Lung(219;0.152)		GTTGGTGTAAGGTGTCTCCAG	0.463													11	18					0.00829132	0.00859403	0.008291	1	0
ARGFX	503582	broad.mit.edu	37	3	121303784	121303784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:121303784G>A	uc003eef.2	+	4	336	c.241G>A	c.(241-243)GAA>AAA	p.E81K		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	81	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		AAGGCATAAAGAACGTACTTC	0.423													68	92					0	0	0.014410	0	0
SLC15A2	6565	broad.mit.edu	37	3	121643824	121643824	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:121643824C>T	uc003eep.2	+	13	1221	c.1068C>T	c.(1066-1068)ATC>ATT	p.I356I	SLC15A2_uc011bjn.1_Silent_p.I325I	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	356	Helical; (Potential).				protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TTATCTTCATCCCGTTGTTTG	0.383													31	89					0	0	0.013726	0	0
PARP9	83666	broad.mit.edu	37	3	122274967	122274967	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:122274967C>T	uc010hri.2	-	4	301	c.156G>A	c.(154-156)GAG>GAA	p.E52E	PARP9_uc003eff.3_Silent_p.E17E|PARP9_uc011bjs.1_Silent_p.E17E|PARP9_uc003efg.2_Intron|PARP9_uc003efi.2_Silent_p.E17E|PARP9_uc003efh.2_Silent_p.E52E|PARP9_uc003efj.2_Silent_p.E17E	NM_001146102	NP_001139574	Q8IXQ6	PARP9_HUMAN	poly (ADP-ribose) polymerase family, member 9	52					cell migration	cytosol|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)|pancreas(1)|prostate(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0519)		GAGCACCAGTCTCTGGAAAAG	0.333													9	13					0	0	0.004482	0	0
PARP15	165631	broad.mit.edu	37	3	122351038	122351038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:122351038G>A	uc003efm.2	+	10	1610	c.1544G>A	c.(1543-1545)CGA>CAA	p.R515Q	PARP15_uc003efn.2_Missense_Mutation_p.R320Q|PARP15_uc003efo.1_Missense_Mutation_p.R262Q|PARP15_uc003efp.1_Missense_Mutation_p.R281Q|PARP15_uc011bjt.1_Missense_Mutation_p.R212Q	NM_001113523	NP_001106995	Q460N3	PAR15_HUMAN	poly (ADP-ribose) polymerase family, member 15	493	PARP catalytic.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	NAD+ ADP-ribosyltransferase activity			lung(3)|upper_aerodigestive_tract(1)|ovary(1)	5				GBM - Glioblastoma multiforme(114;0.0531)		AAGTTCACCCGAACTTGTTCT	0.358													21	26					0	0	0.002780	0	0
PARP14	54625	broad.mit.edu	37	3	122414336	122414336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:122414336C>T	uc003efq.3	+	5	721	c.662C>T	c.(661-663)CCA>CTA	p.P221L	PARP14_uc010hrk.2_RNA	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	221					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		CAGCTTTCTCCAAGACTTCTG	0.338													9	9					0	0	0.001855	0	0
KALRN	8997	broad.mit.edu	37	3	124175505	124175505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:124175505C>T	uc003ehg.2	+	23	3905	c.3778C>T	c.(3778-3780)CGG>TGG	p.R1260W	KALRN_uc010hrv.1_Missense_Mutation_p.R1251W|KALRN_uc003ehf.1_Missense_Mutation_p.R1260W|KALRN_uc011bjy.1_Missense_Mutation_p.R1251W|KALRN_uc003ehh.1_Missense_Mutation_p.R606W	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	1260					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCTTTCGGATCGGGAGGTCAA	0.537													30	44					0	0	0.009535	0	0
PIK3R4	30849	broad.mit.edu	37	3	130452686	130452686	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:130452686G>T	uc003enj.2	-	4	1737	c.1156C>A	c.(1156-1158)CTA>ATA	p.L386I		NM_014602	NP_055417	Q99570	PI3R4_HUMAN	phosphoinositide-3-kinase, regulatory subunit 4	386					fibroblast growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway	cytosol	ATP binding|protein binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|breast(2)|skin(2)|stomach(1)|central_nervous_system(1)|kidney(1)	12						AGGGTCTGTAGGCAGGATGTT	0.403													42	73					1.57019e-19	1.67066e-19	0.007835	1	0
EPHB1	2047	broad.mit.edu	37	3	134670370	134670370	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:134670370G>A	uc003eqt.2	+	3	501	c.281G>A	c.(280-282)AGA>AAA	p.R94K	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Missense_Mutation_p.R94K	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	94	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TTCACTGTGAGAGACTGCAGC	0.532													11	9					0	0	0.010729	0	0
DBR1	51163	broad.mit.edu	37	3	137881090	137881090	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:137881090G>A	uc003erv.2	-	8	1412	c.1276C>T	c.(1276-1278)CCA>TCA	p.P426S	DBR1_uc003eru.2_Missense_Mutation_p.P375S|DBR1_uc003ert.2_Missense_Mutation_p.P194S	NM_016216	NP_057300	Q9UK59	DBR1_HUMAN	debranching enzyme homolog 1	426						nucleus	metal ion binding|RNA lariat debranching enzyme activity				0						ATTTCATCTGGATTAATAGAA	0.383													228	289					0	0	0.014410	0	0
TRIM42	287015	broad.mit.edu	37	3	140401461	140401461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:140401461G>A	uc003eto.1	+	2	690	c.499G>A	c.(499-501)GAG>AAG	p.E167K		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	167	RING-type.					intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						CAGCCTGTGCGAGAAGTGCCT	0.602													49	65					0	0	0.014410	0	0
ATR	545	broad.mit.edu	37	3	142254971	142254971	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:142254971G>A	uc003eux.3	-	20	3920	c.3798C>T	c.(3796-3798)GCC>GCT	p.A1266A		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1266					cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						CCTGGAGAACGGCTTTTATCT	0.289								Other_conserved_DNA_damage_response_genes					22	44					0	0	0.012319	0	0
OTOL1	131149	broad.mit.edu	37	3	161214600	161214600	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:161214600G>A	uc011bpb.1	+	1	5	c.5G>A	c.(4-6)TGG>TAG	p.W2*		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	2						collagen					0						TCAAATATGTGGATGTTTTCT	0.299													7	6					0	0	0.001984	0	0
MECOM	2122	broad.mit.edu	37	3	168840402	168840402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:168840402C>T	uc003ffi.3	-	5	649	c.380G>A	c.(379-381)AGT>AAT	p.S127N	MECOM_uc010hwk.1_Missense_Mutation_p.S150N|MECOM_uc003ffj.3_Missense_Mutation_p.S191N|MECOM_uc011bpi.1_Missense_Mutation_p.S127N|MECOM_uc003ffn.3_Missense_Mutation_p.S127N|MECOM_uc003ffk.2_Missense_Mutation_p.S127N|MECOM_uc003ffl.2_Missense_Mutation_p.S287N|MECOM_uc011bpj.1_Missense_Mutation_p.S315N|MECOM_uc011bpk.1_Missense_Mutation_p.S117N|MECOM_uc010hwn.2_Missense_Mutation_p.S315N|MECOM_uc003ffm.1_Missense_Mutation_p.S191N	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	127	Interaction with MAPK9, SMAD3 and probably SUV39H1.				apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						GTGCTTTCCACTGTCATGTGA	0.433													22	36					0	0	0.012319	0	0
SAMD7	344658	broad.mit.edu	37	3	169644351	169644351	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:169644351G>A	uc003fgd.2	+	6	568	c.301G>A	c.(301-303)GAA>AAA	p.E101K	SAMD7_uc003fge.2_Missense_Mutation_p.E101K|SAMD7_uc011bpo.1_Missense_Mutation_p.E2K	NM_182610	NP_872416	Q7Z3H4	SAMD7_HUMAN	sterile alpha motif domain containing 7	101										skin(1)	1	all_cancers(22;1.55e-22)|all_epithelial(15;2.41e-27)|all_lung(20;3.52e-17)|Lung NSC(18;1.44e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0106)			GACAGAAATGGAAATGTATGC	0.388													9	17					0	0	0.010729	0	0
FNDC3B	64778	broad.mit.edu	37	3	171965375	171965375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:171965375C>T	uc003fhy.2	+	5	489	c.317C>T	c.(316-318)CCT>CTT	p.P106L	FNDC3B_uc003fhz.3_Missense_Mutation_p.P106L|FNDC3B_uc003fia.2_Missense_Mutation_p.P37L	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	106						endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		CCCCAGTCTCCTGAGTGTTAT	0.483													68	70					0	0	0.014410	0	0
EIF4G1	1981	broad.mit.edu	37	3	184040702	184040702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:184040702C>T	uc003fnp.2	+	13	2087	c.1889C>T	c.(1888-1890)CCA>CTA	p.P630L	EIF4G1_uc003fno.1_Missense_Mutation_p.P571L|EIF4G1_uc010hxw.1_Missense_Mutation_p.P466L|EIF4G1_uc003fnt.2_Missense_Mutation_p.P341L|EIF4G1_uc003fnq.2_Missense_Mutation_p.P543L|EIF4G1_uc003fnr.2_Missense_Mutation_p.P466L|EIF4G1_uc010hxx.2_Missense_Mutation_p.P637L|EIF4G1_uc003fns.2_Missense_Mutation_p.P590L|EIF4G1_uc010hxy.2_Missense_Mutation_p.P637L|EIF4G1_uc003fnv.3_Missense_Mutation_p.P630L|EIF4G1_uc003fnu.3_Missense_Mutation_p.P630L|EIF4G1_uc003fnw.2_Missense_Mutation_p.P637L|EIF4G1_uc003fnx.2_Missense_Mutation_p.P434L|EIF4G1_uc003fny.3_Missense_Mutation_p.P434L|SNORD66_uc003fnz.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	630	MIF4G.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ATGCAGAAGCCAGAGGGATTG	0.502													83	108					0	0	0.014410	0	0
EPHB3	2049	broad.mit.edu	37	3	184298380	184298381	+	Missense_Mutation	DNP	CC	TT	TT	rs146519815		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:184298380_184298381CC>TT	uc003foz.2	+	12	2800_2801	c.2363_2364CC>TT	c.(2362-2364)TCC>TTT	p.S788F		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	788	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			GATGACCCCTCCGATCCTACCT	0.649													24	43					0	0	0.004672	0	0
ATP13A4	84239	broad.mit.edu	37	3	193156358	193156358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:193156358G>A	uc003ftd.2	-	23	2686	c.2578C>T	c.(2578-2580)CAT>TAT	p.H860Y	ATP13A4_uc010hzi.2_RNA	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	860	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		ATGCCCACATGAGCCATTTTC	0.453													18	18					0	0	0.004990	0	0
LRRC15	131578	broad.mit.edu	37	3	194081166	194081166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:194081166G>A	uc003ftu.2	-	2	693	c.607C>T	c.(607-609)CGG>TGG	p.R203W	LRRC15_uc003ftt.2_Missense_Mutation_p.R209W	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	203	Extracellular (Potential).|LRR 7.					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		TCATACAGCCGGAGGACCTGG	0.562													95	93					0	0	0.014410	0	0
GAK	2580	broad.mit.edu	37	4	906537	906537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:906537C>T	uc003gbm.3	-	3	452	c.253G>A	c.(253-255)GAA>AAA	p.E85K	GAK_uc003gbn.3_Intron|GAK_uc010ibk.1_Intron|GAK_uc003gbo.2_RNA|GAK_uc003gbl.3_5'Flank	NM_005255	NP_005246	O14976	GAK_HUMAN	cyclin G associated kinase	85	Protein kinase.				cell cycle	focal adhesion|Golgi apparatus|perinuclear region of cytoplasm	ATP binding|heat shock protein binding|protein serine/threonine kinase activity			lung(2)|central_nervous_system(1)|skin(1)	4				Colorectal(103;0.219)		AAGCAAACTTCTTGAATGATG	0.493													19	21					0	0	0.007413	0	0
FGFR3	2261	broad.mit.edu	37	4	1808298	1808298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:1808298G>A	uc003gdr.3	+	16	2312	c.2056G>A	c.(2056-2058)GAG>AAG	p.E686K	FGFR3_uc003gdu.2_Missense_Mutation_p.E688K|FGFR3_uc003gds.3_Missense_Mutation_p.E574K|FGFR3_uc003gdq.3_Missense_Mutation_p.G663E	NM_000142	NP_000133	P22607	FGFR3_HUMAN	fibroblast growth factor receptor 3 isoform 1	686	Protein kinase.|Cytoplasmic (Potential).				bone maturation|cell growth|insulin receptor signaling pathway|JAK-STAT cascade|MAPKKK cascade|negative regulation of developmental growth|positive regulation of cell proliferation	integral to plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|identical protein binding	p.E686K(1)		urinary_tract(2177)|skin(314)|upper_aerodigestive_tract(57)|haematopoietic_and_lymphoid_tissue(24)|prostate(9)|cervix(6)|central_nervous_system(4)|large_intestine(3)|lung(3)|testis(2)|pancreas(1)	2600		Breast(71;0.212)|all_epithelial(65;0.241)	all cancers(2;0.000145)|OV - Ovarian serous cystadenocarcinoma(23;0.0019)|Epithelial(3;0.00221)|GBM - Glioblastoma multiforme(2;0.234)		Palifermin(DB00039)	CCTGCTCTGGGAGATCTTCAC	0.652		1	Mis|T	IGH@|ETV6	bladder|MM|T-cell lymphoma		Hypochondroplasia|Thanatophoric dysplasia		Muenke_syndrome|Saethre-Chotzen_syndrome				11	28					0	0	0.008291	0	0
HTT	3064	broad.mit.edu	37	4	3189493	3189493	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:3189493C>T	uc011bvq.1	+	40	5256	c.5111C>T	c.(5110-5112)TCT>TTT	p.S1704F		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	1702					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CTCTCCTTCTCTCCGTATTTA	0.398													55	56					0	0	0.014410	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351400	40351400	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:40351400C>T	uc003gva.1	+	4	883	c.867C>T	c.(865-867)ATC>ATT	p.I289I		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	289					elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	TGGCAGAAATCATGCCGGCCT	0.512													58	62					0	0	0.014410	0	0
RBM47	54502	broad.mit.edu	37	4	40427972	40427972	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:40427972G>A	uc003gvc.2	-	7	2441	c.1731C>T	c.(1729-1731)TTC>TTT	p.F577F	RBM47_uc003gvd.2_Silent_p.F508F|RBM47_uc003gve.2_RNA|RBM47_uc011bys.1_Silent_p.F539F	NM_001098634	NP_001092104	A0AV96	RBM47_HUMAN	RNA binding motif protein 47 isoform a	577	Ala-rich.					nucleus	nucleotide binding|RNA binding			breast(3)	3						CAGCAGCAGGGAAGGCCTGAG	0.587													33	36					0	0	0.012213	0	0
BEND4	389206	broad.mit.edu	37	4	42119579	42119579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:42119579C>T	uc003gwn.2	-	6	2141	c.1561G>A	c.(1561-1563)GAT>AAT	p.D521N	BEND4_uc003gwm.2_3'UTR	NM_207406	NP_997289	Q6ZU67	BEND4_HUMAN	BEN domain containing 4 isoform a	521											0						AAGACTTCATCCTGAGAAGCC	0.527													9	11					0	0	0.006214	0	0
TECRL	253017	broad.mit.edu	37	4	65155462	65155462	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:65155462G>A	uc003hcv.2	-	9	907	c.798C>T	c.(796-798)TTC>TTT	p.F266F		NM_001010874	NP_001010874	Q5HYJ1	TECRL_HUMAN	steroid 5 alpha-reductase 2-like 2	266					lipid metabolic process	cytoplasm|integral to membrane	oxidoreductase activity, acting on the CH-CH group of donors				0						TTACATTGATGAAATGATTCC	0.274													7	3					0	0	0.008291	0	0
Unknown	0	broad.mit.edu	37	4	69342107	69342107	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:69342107A>C	uc003hdz.3	+	7	722	c.658A>C	c.(658-660)ACC>CCC	p.T220P		NM_014058	NP_054777			transmembrane protease, serine 11E																		CTGTGGAGCAACCTTAATTAA	0.502													27	60					0	0	0.008361	0	0
UGT2B28	54490	broad.mit.edu	37	4	70146759	70146759	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:70146759G>A	uc003hej.2	+	1	543	c.541G>A	c.(541-543)GAA>AAA	p.E181K	UGT2B28_uc010ihr.2_Missense_Mutation_p.E181K	NM_053039	NP_444267	Q9BY64	UDB28_HUMAN	UDP glucuronosyltransferase 2 family,	181					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(1)	1					Flunitrazepam(DB01544)	CTACACAATTGAAAGGCACAG	0.418													45	46					0	0	0.010771	0	0
UGT2B4	7363	broad.mit.edu	37	4	70361039	70361039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:70361039C>T	uc003hek.3	-	1	588	c.541G>A	c.(541-543)GAA>AAA	p.E181K	UGT2B4_uc011cap.1_Missense_Mutation_p.E45K|UGT2B4_uc003hel.3_Missense_Mutation_p.E181K	NM_021139	NP_066962	P06133	UD2B4_HUMAN	UDP glucuronosyltransferase 2B4 precursor	181					estrogen catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(2)	2						CTATGCTTTTCAATTGCGTAG	0.443													28	20					0	0	0.005443	0	0
ALB	213	broad.mit.edu	37	4	74276095	74276095	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:74276095C>A	uc003hgs.3	+	6	755	c.682C>A	c.(682-684)CAA>AAA	p.Q228K	ALB_uc003hgw.3_Intron|ALB_uc011cbe.1_5'UTR|ALB_uc003hgt.3_Missense_Mutation_p.Q228K|ALB_uc010iii.2_Missense_Mutation_p.Q113K|ALB_uc003hgu.3_Missense_Mutation_p.Q78K|ALB_uc003hgv.3_5'UTR|ALB_uc011cbf.1_Missense_Mutation_p.Q118K|ALB_uc010iij.2_RNA|ALB_uc003hgx.3_5'UTR	NM_000477	NP_000468	P02768	ALBU_HUMAN	albumin preproprotein	228	Albumin 2.				bile acid and bile salt transport|bile acid metabolic process|cellular response to starvation|hemolysis by symbiont of host erythrocytes|lipoprotein metabolic process|maintenance of mitochondrion location|negative regulation of apoptosis|platelet activation|platelet degranulation|sodium-independent organic anion transport|transmembrane transport	extracellular space|platelet alpha granule lumen|protein complex	antioxidant activity|chaperone binding|copper ion binding|DNA binding|drug binding|fatty acid binding|pyridoxal phosphate binding|toxin binding			ovary(3)|skin(3)	6	Breast(15;0.00102)		Epithelial(6;4.8e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000263)|all cancers(17;0.000472)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)		Acenocoumarol(DB01418)|Acitretin(DB00459)|Alfentanil(DB00802)|Aluminium(DB01370)|Auranofin(DB00995)|Bismuth(DB01402)|Captopril(DB01197)|Carboplatin(DB00958)|Cefalotin(DB00456)|Cefazolin(DB01327)|Cefonicid(DB01328)|Cefoperazone(DB01329)|Chlorpheniramine(DB01114)|Chlorpromazine(DB00477)|Ciprofloxacin(DB00537)|Clonazepam(DB01068)|Cloxacillin(DB01147)|Cytarabine(DB00987)|Dantrolene(DB01219)|Diclofenac(DB00586)|Diflunisal(DB00861)|Digitoxin(DB01396)|Estrone(DB00655)|Ethacrynic acid(DB00903)|Etodolac(DB00749)|Flurbiprofen(DB00712)|Gadobenate Dimeglumine(DB00743)|Gatifloxacin(DB01044)|Gliclazide(DB01120)|Halothane(DB01159)|Human Serum Albumin(DB00062)|Hyaluronidase(DB00070)|Ibuprofen(DB01050)|Insulin-detemir(DB01307)|Insulin-glargine(DB01308)|Iodipamide(DB04711)|Ketoprofen(DB01009)|Levamisole(DB00848)|Levothyroxine(DB00451)|Liothyronine(DB00279)|Mefenamic acid(DB00784)|Mephenytoin(DB00532)|Methotrexate(DB00563)|Nortriptyline(DB00540)|Oxazepam(DB00842)|Paclitaxel(DB01229)|Phenprocoumon(DB00946)|Probenecid(DB01032)|Propofol(DB00818)|Pyridoxine(DB00165)|Salicyclic acid(DB00936)|Saquinavir(DB01232)|Serum albumin(DB00096)|Serum albumin iodonated(DB00064)|Sodium lauryl sulfate(DB00815)|Sucralfate(DB00364)|Sulfamethizole(DB00576)|Sulindac(DB00605)|Suprofen(DB00870)|Testosterone(DB00624)|Xanthophyll(DB00137)	TGCCAGTCTCCAAAAATTTGG	0.363													31	43					2.49534e-26	2.66965e-26	0.010818	1	0
AFM	173	broad.mit.edu	37	4	74352687	74352687	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:74352687T>G	uc003hhb.2	+	5	517	c.486T>G	c.(484-486)TTT>TTG	p.F162L		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	162	Albumin 1.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TTTATAGCTTTTTATATGAAG	0.338													25	36					0	0	0.005443	0	0
FRAS1	80144	broad.mit.edu	37	4	79199862	79199862	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:79199862G>A	uc003hlb.2	+	10	1475	c.1035G>A	c.(1033-1035)AGG>AGA	p.R345R	FRAS1_uc003hkw.2_Silent_p.R345R|FRAS1_uc003hky.1_Silent_p.R49R|FRAS1_uc003hkz.2_Silent_p.R49R	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	345	Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GCATTTCAAGGAATGGTTATT	0.328													18	24					0	0	0.010504	0	0
PTPN13	5783	broad.mit.edu	37	4	87556443	87556443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:87556443C>T	uc003hpz.2	+	2	514	c.34C>T	c.(34-36)CGG>TGG	p.R12W	PTPN13_uc003hpy.2_Missense_Mutation_p.R12W|PTPN13_uc003hqa.2_Missense_Mutation_p.R12W|PTPN13_uc003hqb.2_Missense_Mutation_p.R12W	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	12	KIND.					cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		CCTGGAGGTTCGGGGTGGACC	0.393													4	9					0	0	0.001168	0	0
PTPN13	5783	broad.mit.edu	37	4	87622856	87622856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:87622856G>A	uc003hpz.2	+	7	1577	c.1097G>A	c.(1096-1098)CGA>CAA	p.R366Q	PTPN13_uc003hpy.2_Missense_Mutation_p.R366Q|PTPN13_uc003hqa.2_Missense_Mutation_p.R366Q|PTPN13_uc003hqb.2_Missense_Mutation_p.R366Q	NM_080683	NP_542414	Q12923	PTN13_HUMAN	protein tyrosine phosphatase, non-receptor type	366						cytoplasm|cytoskeleton|plasma membrane	protein binding|protein binding|protein tyrosine phosphatase activity			ovary(4)|breast(1)|kidney(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.00082)		TATCACACTCGAGAATTGCCC	0.433													32	34					0	0	0.013726	0	0
GRID2	2895	broad.mit.edu	37	4	94547532	94547532	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:94547532G>A	uc011cdt.1	+	14	2564	c.2306G>A	c.(2305-2307)GGA>GAA	p.G769E	GRID2_uc011cdu.1_Missense_Mutation_p.G674E	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	769	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GCTGATCGGGGATATGGAATT	0.388													20	44					0	0	0.008871	0	0
UNC5C	8633	broad.mit.edu	37	4	96199441	96199441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:96199441C>T	uc003htp.1	-	4	717	c.563G>A	c.(562-564)TGT>TAT	p.C188Y	UNC5C_uc010ilc.1_Missense_Mutation_p.C188Y|UNC5C_uc003htq.2_Missense_Mutation_p.C188Y	NM_003728	NP_003719	O95185	UNC5C_HUMAN	unc5C precursor	188	Extracellular (Potential).|Ig-like C2-type.				apoptosis|axon guidance|brain development	integral to membrane	netrin receptor activity			ovary(3)|pancreas(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;8.72e-10)		AGGTGGTCGACACTGGAGTAA	0.438													24	36					0	0	0.006320	0	0
ADH7	131	broad.mit.edu	37	4	100350759	100350759	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:100350759T>C	uc003huv.1	-	2	185	c.86A>G	c.(85-87)GAG>GGG	p.E29G		NM_000673	NP_000664	P40394	ADH7_HUMAN	class IV alcohol dehydrogenase, mu or sigma	29					ethanol oxidation|fatty acid omega-oxidation|response to bacterium|response to ethanol|xenobiotic metabolic process	cytosol|soluble fraction	alcohol dehydrogenase activity, zinc-dependent|aldehyde oxidase activity|ethanol binding|receptor antagonist activity|retinol binding|retinol dehydrogenase activity			lung(2)|skin(1)	3				OV - Ovarian serous cystadenocarcinoma(123;1.75e-08)	NADH(DB00157)	TTGCTTCTGCTCCCAAAGCAC	0.413													8	12					0	0	0.010729	0	0
C4orf17	84103	broad.mit.edu	37	4	100434341	100434341	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:100434341C>T	uc003huw.2	+	2	426	c.103C>T	c.(103-105)CCC>TCC	p.P35S	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	35											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		CACCCCTCATCCCAGAAGAGT	0.468													30	52					0	0	0.008361	0	0
BANK1	55024	broad.mit.edu	37	4	102791789	102791789	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:102791789G>A	uc003hvy.3	+	5	1165	c.891G>A	c.(889-891)GAG>GAA	p.E297E	BANK1_uc003hvx.3_Silent_p.E282E|BANK1_uc010ill.2_Silent_p.E164E|BANK1_uc003hvz.3_Silent_p.E267E	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	297	DBB.				B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		ATTCAGGAGAGAGTTTGTGCC	0.378													12	16					0	0	0.010729	0	0
NFKB1	4790	broad.mit.edu	37	4	103537644	103537644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:103537644C>T	uc011ceq.1	+	24	3267	c.2800C>T	c.(2800-2802)CGC>TGC	p.R934C	NFKB1_uc011cep.1_Missense_Mutation_p.R935C|NFKB1_uc011cer.1_Missense_Mutation_p.R754C	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	934	Interaction with CFLAR.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	GACATCCTTCCGCAAACTCAG	0.542													46	63					0	0	0.014410	0	0
SEC24B	10427	broad.mit.edu	37	4	110451530	110451530	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:110451530C>T	uc003hzk.2	+	19	3217	c.3162C>T	c.(3160-3162)GGC>GGT	p.G1054G	SEC24B_uc003hzl.2_Silent_p.G1019G|SEC24B_uc011cfp.1_Silent_p.G1084G|SEC24B_uc011cfq.1_Silent_p.G1053G|SEC24B_uc011cfr.1_Silent_p.G1018G	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	1054					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		CTGCATATGGCTCAACTGTCT	0.453													31	33					0	0	0.009535	0	0
ALPK1	80216	broad.mit.edu	37	4	113352004	113352004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:113352004C>T	uc003iap.3	+	11	1580	c.1301C>T	c.(1300-1302)CCC>CTC	p.P434L	ALPK1_uc003ian.3_Missense_Mutation_p.P434L|ALPK1_uc011cfx.1_Missense_Mutation_p.P356L|ALPK1_uc003iao.3_Intron|ALPK1_uc010imo.2_Missense_Mutation_p.P262L	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	434							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		TCTTATGTTCCCGAGAGTTTC	0.423													32	29					0	0	0.009535	0	0
ALPK1	80216	broad.mit.edu	37	4	113362185	113362185	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:113362185C>T	uc003iap.3	+	15	3930	c.3651C>T	c.(3649-3651)TTC>TTT	p.F1217F	ALPK1_uc003ian.3_Silent_p.F1217F|ALPK1_uc011cfx.1_Silent_p.F1139F|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_Silent_p.F1045F	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	1217	Alpha-type protein kinase.						ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		TTTTTTACTTCTTTAATAACC	0.383													53	54					0	0	0.014410	0	0
UGT8	7368	broad.mit.edu	37	4	115597099	115597099	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:115597099G>A	uc003ibs.2	+	6	1803	c.1281G>A	c.(1279-1281)CAG>CAA	p.Q427Q	UGT8_uc003ibt.2_Silent_p.Q427Q|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	427					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		AGAGGGCTCAGAAGCTTTCGG	0.393													15	32					0	0	0.003163	0	0
FAT4	79633	broad.mit.edu	37	4	126241707	126241707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:126241707G>A	uc003ifj.3	+	1	4141	c.4141G>A	c.(4141-4143)GAA>AAA	p.E1381K		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1381	Cadherin 13.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ACTGGACTTTGAAACACAGTC	0.368													34	82					0	0	0.013726	0	0
FAT4	79633	broad.mit.edu	37	4	126336140	126336140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:126336140C>T	uc003ifj.3	+	5	6022	c.6022C>T	c.(6022-6024)CGG>TGG	p.R2008W	FAT4_uc011cgp.1_Missense_Mutation_p.R306W	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2008	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGCTTTGGATCGGGAAAGTCA	0.433													54	71					0	0	0.014410	0	0
FAT4	79633	broad.mit.edu	37	4	126372430	126372430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:126372430G>A	uc003ifj.3	+	9	10259	c.10259G>A	c.(10258-10260)GGA>GAA	p.G3420E	FAT4_uc011cgp.1_Missense_Mutation_p.G1718E|FAT4_uc003ifi.1_Missense_Mutation_p.G898E	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	3420	Cadherin 33.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						GTCCCAATAGGAACTCATGTG	0.463													33	52					0	0	0.004289	0	0
RNF150	57484	broad.mit.edu	37	4	141789438	141789438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:141789438C>T	uc003iio.1	-	7	1948	c.1294G>A	c.(1294-1296)GAC>AAC	p.D432N	RNF150_uc010iok.1_Missense_Mutation_p.D390N	NM_020724	NP_065775	Q9ULK6	RN150_HUMAN	ring finger protein 150 precursor	432	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1	all_hematologic(180;0.162)					TCTTCACAGTCCTGGTCAGTG	0.483													12	28					0	0	0.010729	0	0
NR3C2	4306	broad.mit.edu	37	4	149075792	149075792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:149075792G>A	uc003ilj.3	-	5	2609	c.2275C>T	c.(2275-2277)CCA>TCA	p.P759S	NR3C2_uc003ilk.3_Intron|NR3C2_uc010iph.2_Intron	NM_000901	NP_000892	P08235	MCR_HUMAN	nuclear receptor subfamily 3, group C, member 2	759	Steroid-binding.		P -> S (in AD-PHA1).		regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	endoplasmic reticulum membrane|nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			large_intestine(1)	1	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0614)	Desoxycorticosterone Pivalate(DB01134)|Eplerenone(DB00700)|Fludrocortisone(DB00687)|Spironolactone(DB00421)	GCTGTATCTGGTTTTGAGCTG	0.488													79	90					0	0	0.014410	0	0
LRBA	987	broad.mit.edu	37	4	151792567	151792567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:151792567G>A	uc010ipj.2	-	19	2771	c.2297C>T	c.(2296-2298)TCA>TTA	p.S766L	LRBA_uc003ilu.3_Missense_Mutation_p.S766L	NM_006726	NP_006717	P50851	LRBA_HUMAN	LPS-responsive vesicle trafficking, beach and	766						endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosome|plasma membrane	protein binding			ovary(3)|breast(3)|skin(1)	7	all_hematologic(180;0.151)					AGCTAGCAATGAAAACAATCC	0.368													26	38					0	0	0.008361	0	0
PRSS48	345062	broad.mit.edu	37	4	152204347	152204347	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:152204347C>T	uc011cif.1	+	4	560	c.560C>T	c.(559-561)CCC>CTC	p.P187L	PRSS48_uc011cig.1_Missense_Mutation_p.P44L	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein	187	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						CTCTACAATCCCATCGGTATC	0.468													64	97					0	0	0.014410	0	0
SFRP2	6423	broad.mit.edu	37	4	154702656	154702656	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:154702656C>T	uc003inv.1	-	3	1076	c.835G>A	c.(835-837)GGG>AGG	p.G279R		NM_003013	NP_003004	Q96HF1	SFRP2_HUMAN	secreted frizzled-related protein 2 precursor	279	NTR.				brain development|cardiac left ventricle morphogenesis|cell-cell signaling|dermatome development|hemopoietic stem cell proliferation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cell growth|negative regulation of cell migration|negative regulation of epithelial cell proliferation|negative regulation of epithelial to mesenchymal transition|negative regulation of peptidyl-tyrosine phosphorylation|negative regulation of transcription, DNA-dependent|outflow tract morphogenesis|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of anti-apoptosis|positive regulation of apoptosis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell adhesion mediated by integrin|positive regulation of cell growth|positive regulation of cell proliferation|positive regulation of fat cell differentiation|positive regulation of peptidyl-serine phosphorylation|positive regulation of transcription from RNA polymerase II promoter|regulation of stem cell division|sclerotome development	cytoplasm|extracellular matrix|extracellular space|plasma membrane	fibronectin binding|integrin binding|PDZ domain binding|receptor agonist activity|Wnt receptor activity|Wnt-protein binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(180;0.093)	Renal(120;0.117)				TCTCTCTGCCCCTTCTGCCAC	0.612													23	23					0	0	0.003330	0	0
SPOCK3	50859	broad.mit.edu	37	4	167983660	167983660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:167983660C>T	uc003iri.1	-	4	368	c.227G>A	c.(226-228)GGA>GAA	p.G76E	SPOCK3_uc011cjp.1_Missense_Mutation_p.G73E|SPOCK3_uc011cjq.1_Missense_Mutation_p.G85E|SPOCK3_uc011cjr.1_5'UTR|SPOCK3_uc003irj.1_Missense_Mutation_p.G73E|SPOCK3_uc011cjs.1_Missense_Mutation_p.G25E|SPOCK3_uc011cjt.1_Intron|SPOCK3_uc011cju.1_Intron|SPOCK3_uc011cjv.1_Intron|SPOCK3_uc003irk.3_Missense_Mutation_p.G73E|SPOCK3_uc011cjw.1_RNA	NM_016950	NP_058646	Q9BQ16	TICN3_HUMAN	testican 3 isoform 2	76					signal transduction	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase inhibitor activity			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_hematologic(180;0.221)	Prostate(90;0.0181)|Renal(120;0.0184)|Melanoma(52;0.0198)		GBM - Glioblastoma multiforme(119;0.02)		GAAGGGTTTTCCTGGACTCCA	0.308													28	30					0	0	0.013726	0	0
GALNTL6	442117	broad.mit.edu	37	4	173803993	173803993	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:173803993G>A	uc003isv.2	+	8	1712	c.976G>A	c.(976-978)GAA>AAA	p.E326K		NM_001034845	NP_001030017	Q49A17	GLTL6_HUMAN	N-acetylgalactosaminyltransferase-like 6	326	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			breast(2)|ovary(1)|skin(1)	4						ATGGTTTTGGGAATTGGGTGG	0.418													49	69					0	0	0.014410	0	0
GLRA3	8001	broad.mit.edu	37	4	175603979	175603979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:175603979C>T	uc003ity.1	-	6	1189	c.686G>A	c.(685-687)CGA>CAA	p.R229Q	GLRA3_uc003itz.1_Missense_Mutation_p.R229Q	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	229	Extracellular (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	AGTGCAGTATCGTAAATCTTT	0.373													24	19					0	0	0.004656	0	0
ODZ3	55714	broad.mit.edu	37	4	183600840	183600840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:183600840G>A	uc003ivd.1	+	7	1385	c.1348G>A	c.(1348-1350)GAT>AAT	p.D450N	ODZ3_uc003ive.1_5'Flank	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	450	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GGAGCTCCTGGATGGCAGCAG	0.537													30	37					0	0	0.009535	0	0
TLR3	7098	broad.mit.edu	37	4	187004218	187004218	+	Missense_Mutation	SNP	G	A	A	rs144550375		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:187004218G>A	uc003iyq.2	+	4	1479	c.1378G>A	c.(1378-1380)GAA>AAA	p.E460K	TLR3_uc011ckz.1_Missense_Mutation_p.E183K|TLR3_uc003iyr.2_Missense_Mutation_p.E183K	NM_003265	NP_003256	O15455	TLR3_HUMAN	toll-like receptor 3 precursor	460	Lumenal (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|defense response to bacterium|defense response to virus|detection of virus|hyperosmotic response|I-kappaB phosphorylation|inflammatory response|innate immune response|MyD88-independent toll-like receptor signaling pathway|negative regulation of osteoclast differentiation|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-beta production|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of toll-like receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor production|toll-like receptor 3 signaling pathway	endoplasmic reticulum membrane|endosome membrane|integral to plasma membrane	double-stranded RNA binding|transmembrane receptor activity			ovary(2)|prostate(1)|lung(1)|breast(1)	5		all_cancers(14;4.27e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.0066)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.47e-11)|BRCA - Breast invasive adenocarcinoma(30;1.14e-05)|GBM - Glioblastoma multiforme(59;0.000107)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.16)		AAATATTTTCGAAATCTATCT	0.473													21	30					0	0	0.012319	0	0
KLKB1	3818	broad.mit.edu	37	4	187171498	187171498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:187171498C>T	uc003iyy.2	+	7	771	c.700C>T	c.(700-702)CAC>TAC	p.H234Y	KLKB1_uc011clc.1_Silent_p.I21I|KLKB1_uc011cld.1_Missense_Mutation_p.H196Y	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	234	Apple 3.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		CTGCACCTATCACCCCAACTG	0.458													52	62					0	0	0.014410	0	0
F11	2160	broad.mit.edu	37	4	187205274	187205274	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:187205274C>T	uc003iza.1	+	11	1497	c.1164C>T	c.(1162-1164)ATC>ATT	p.I388I		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	388	Peptidase S1.				blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	AGCCCAGGATCGTTGGAGGAA	0.517													46	42					0	0	0.014410	0	0
MTNR1A	4543	broad.mit.edu	37	4	187454892	187454892	+	Missense_Mutation	SNP	G	A	A	rs150190540		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:187454892G>A	uc003izd.1	-	2	1022	c.1004C>T	c.(1003-1005)CCG>CTG	p.P335L		NM_005958	NP_005949	P48039	MTR1A_HUMAN	melatonin receptor 1A	335	Cytoplasmic (Potential).				circadian rhythm|G-protein signaling, coupled to cyclic nucleotide second messenger|mating behavior	integral to plasma membrane	melatonin receptor activity			ovary(1)|skin(1)|breast(1)|central_nervous_system(1)|pancreas(1)	5		all_cancers(14;6.39e-56)|all_epithelial(14;1.48e-41)|all_lung(41;2.45e-15)|Lung NSC(41;7.26e-15)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00335)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|Renal(120;0.0183)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;7.63e-12)|BRCA - Breast invasive adenocarcinoma(30;6.68e-07)|GBM - Glioblastoma multiforme(59;3.44e-05)|LUSC - Lung squamous cell carcinoma(40;0.000106)|STAD - Stomach adenocarcinoma(60;0.000279)|READ - Rectum adenocarcinoma(43;0.159)	Melatonin(DB01065)|Ramelteon(DB00980)	CAGTGGAGACGGTTTCCATTT	0.493													42	56					0	0	0.009718	0	0
SLC6A19	340024	broad.mit.edu	37	5	1216695	1216695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:1216695G>A	uc003jbw.3	+	7	966	c.910G>A	c.(910-912)GTG>ATG	p.V304M		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	304	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GAAGGACTCGGTGATTGTGTC	0.592													19	9					0	0	0.012319	0	0
ROPN1L	83853	broad.mit.edu	37	5	10442315	10442315	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:10442315G>A	uc003jex.3	+	1	307	c.36G>A	c.(34-36)CAG>CAA	p.Q12Q		NM_031916	NP_114122	Q96C74	ROP1L_HUMAN	ropporin 1-like	12					ciliary or flagellar motility|signal transduction	cytoplasm|motile cilium	cAMP-dependent protein kinase regulator activity|protein binding			ovary(1)	1						GCGCTCAGCAGATCCACATTC	0.662													38	9					0	0	0.005524	0	0
CTNND2	1501	broad.mit.edu	37	5	11236916	11236916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:11236916G>A	uc003jfa.1	-	10	1793	c.1648C>T	c.(1648-1650)CCG>TCG	p.P550S	CTNND2_uc010itt.2_Missense_Mutation_p.P459S|CTNND2_uc011cmy.1_Missense_Mutation_p.P213S|CTNND2_uc011cmz.1_Missense_Mutation_p.P117S|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.P117S	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	550	ARM 2.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						GGCAGTTCCGGGTCTCTCCAT	0.478													34	11					0	0	0.006230	0	0
CDH10	1008	broad.mit.edu	37	5	24488047	24488047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:24488047G>A	uc003jgr.1	-	12	2424	c.2092C>T	c.(2092-2094)CCT>TCT	p.P698S	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	698	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		GTCCTCCGAGGAATAAATAAC	0.502										HNSCC(23;0.051)			30	6					0	0	0.006320	0	0
CDH9	1007	broad.mit.edu	37	5	26988490	26988490	+	Splice_Site	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:26988490C>T	uc003jgs.1	-	2	121	c.-48_splice	c.e2-1		CDH9_uc010iug.2_Splice_Site	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein						adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						TTTGTTTTTCCTAAAGAGTAA	0.313													10	3					0	0	0.006214	0	0
EGFLAM	133584	broad.mit.edu	37	5	38451535	38451535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:38451535C>T	uc003jlc.1	+	20	3010	c.2686C>T	c.(2686-2688)CTT>TTT	p.L896F	EGFLAM_uc003jlb.1_Missense_Mutation_p.L888F|EGFLAM_uc003jle.1_Missense_Mutation_p.L654F|EGFLAM_uc003jlf.1_Missense_Mutation_p.L254F|EGFLAM_uc003jlg.1_Missense_Mutation_p.L31F	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	896	Laminin G-like 3.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					TTCCTTGGGCCTTCGGGATGG	0.517													49	10					0	0	0.014410	0	0
FYB	2533	broad.mit.edu	37	5	39202457	39202457	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:39202457C>T	uc003jls.2	-	1	673	c.606G>A	c.(604-606)CCG>CCA	p.P202P	FYB_uc003jlt.2_Silent_p.P202P|FYB_uc003jlu.2_Silent_p.P202P|FYB_uc011cpl.1_Silent_p.P212P	NM_199335	NP_955367	O15117	FYB_HUMAN	FYN binding protein (FYB-120/130) isoform 2	202					cell junction assembly|immune response|intracellular protein kinase cascade|NLS-bearing substrate import into nucleus|protein phosphorylation|T cell receptor signaling pathway	cytosol|nucleus	protein binding			ovary(2)	2	all_lung(31;0.000343)		Epithelial(62;0.235)			TACTTAGGGGCGGCTTCTGGC	0.522													41	11					0	0	0.007835	0	0
C6	729	broad.mit.edu	37	5	41176592	41176592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:41176592C>T	uc003jmk.2	-	8	1363	c.1153G>A	c.(1153-1155)GAA>AAA	p.E385K	C6_uc003jml.1_Missense_Mutation_p.E385K	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	385	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				TTCTTTAGTTCCTCACTGCTA	0.393													12	1					0	0	0.010729	0	0
DHX29	54505	broad.mit.edu	37	5	54566425	54566425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:54566425G>A	uc003jpx.2	-	19	3094	c.2974C>T	c.(2974-2976)CGA>TGA	p.R992*	DHX29_uc010ivw.2_RNA	NM_019030	NP_061903	Q7Z478	DHX29_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 29	992	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|translation initiation factor activity			ovary(2)|central_nervous_system(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0544)|Prostate(74;0.183)				GTGTACATTCGGAAACAGAAG	0.423													4	57					0	0	0.001984	0	0
SLC38A9	153129	broad.mit.edu	37	5	54993677	54993677	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:54993677T>A	uc003jqf.2	-	3	311	c.110A>T	c.(109-111)AAA>ATA	p.K37I	SLC38A9_uc010ivy.2_5'UTR	NM_173514	NP_775785	Q8NBW4	S38A9_HUMAN	solute carrier family 38, member 9	37					amino acid transport|sodium ion transport	integral to membrane					0		Lung NSC(810;0.00122)|Prostate(74;0.0376)|Breast(144;0.181)				TGCTTACCTTTTGGATCTTAG	0.313													20	4					0	0	0.012319	0	0
SFRS12	140890	broad.mit.edu	37	5	65470803	65470803	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:65470803C>T	uc003juo.2	+	11	1826	c.1166C>T	c.(1165-1167)TCT>TTT	p.S389F	SFRS12_uc003jun.2_Missense_Mutation_p.S505F|SFRS12_uc010iwy.2_Missense_Mutation_p.S389F	NM_139168	NP_631907	Q8WXA9	SREK1_HUMAN	splicing factor, arginine/serine-rich 12 isoform	389	Arg/Glu/Lys/Ser-rich.				mRNA processing|RNA splicing	spliceosomal complex	nucleic acid binding|nucleotide binding|protein binding				0		Lung NSC(167;9.34e-06)|Prostate(74;0.00187)|Ovarian(174;0.0545)|Breast(144;0.0928)|Colorectal(97;0.234)		Lung(70;0.00449)		AGCAGGAGTTCTTCCAGATCG	0.398													12	5					0	0	0.006122	0	0
VCAN	1462	broad.mit.edu	37	5	82835116	82835116	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:82835116G>A	uc003kii.3	+	8	6650	c.6294G>A	c.(6292-6294)TGG>TGA	p.W2098*	VCAN_uc003kij.3_Nonsense_Mutation_p.W1111*|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Nonsense_Mutation_p.W762*	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	2098	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		CCAAATTATGGTCTAGGCAAG	0.403													28	6					0	0	0.008361	0	0
GPR98	84059	broad.mit.edu	37	5	89924507	89924507	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:89924507T>C	uc003kju.2	+	8	1463	c.1367T>C	c.(1366-1368)CTC>CCC	p.L456P	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	456	Extracellular (Potential).|Calx-beta 4.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCTGGAGTTCTCCATTTTGCA	0.478													39	10					0	0	0.010771	0	0
GPR98	84059	broad.mit.edu	37	5	89953983	89953983	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:89953983C>T	uc003kju.2	+	21	4736	c.4640C>T	c.(4639-4641)TCT>TTT	p.S1547F	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1547	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAACTAGTTTCTGTATATGGA	0.363													31	5					0	0	0.008361	0	0
ST8SIA4	7903	broad.mit.edu	37	5	100147716	100147716	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:100147716C>T	uc003knk.2	-	5	1243	c.915G>A	c.(913-915)AAG>AAA	p.K305K		NM_005668	NP_005659	Q92187	SIA8D_HUMAN	ST8 alpha-N-acetyl-neuraminide	305	Lumenal (Potential).				axon guidance|N-glycan processing	integral to Golgi membrane	alpha-N-acetylneuraminate alpha-2,8-sialyltransferase activity			large_intestine(1)|central_nervous_system(1)	2		all_cancers(142;1.5e-07)|all_epithelial(76;1.43e-10)|Prostate(80;0.000644)|Lung NSC(167;0.0059)|all_lung(232;0.00914)|Ovarian(225;0.024)|Colorectal(57;0.09)|Breast(839;0.203)		COAD - Colon adenocarcinoma(37;0.00402)		CATTTAAATCCTTAGGGAAGG	0.373													15	4					0	0	0.002450	0	0
WDR36	134430	broad.mit.edu	37	5	110446899	110446899	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:110446899C>T	uc003kpd.2	+	15	1923	c.1806C>T	c.(1804-1806)TTC>TTT	p.F602F	WDR36_uc010jbu.2_RNA	NM_139281	NP_644810	Q8NI36	WDR36_HUMAN	WD repeat domain 36	602					response to stimulus|rRNA processing|visual perception	small-subunit processome				ovary(1)|skin(1)	2		all_cancers(142;2.72e-05)|all_epithelial(76;4.4e-07)|Prostate(80;0.00955)|Lung NSC(167;0.0418)|Ovarian(225;0.0443)|Colorectal(57;0.0465)|all_lung(232;0.0508)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;1.39e-08)|Epithelial(69;1.82e-07)|all cancers(49;2.04e-05)|COAD - Colon adenocarcinoma(37;0.111)		TGGATGACTTCTCCATTAGTG	0.378													103	25					0	0	0.014410	0	0
APC	324	broad.mit.edu	37	5	112174607	112174607	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:112174607G>T	uc010jby.2	+	16	3696	c.3316G>T	c.(3316-3318)GGA>TGA	p.G1106*	APC_uc011cvt.1_Nonsense_Mutation_p.G1088*|APC_uc003kpz.3_Nonsense_Mutation_p.G1106*|APC_uc003kpy.3_Nonsense_Mutation_p.G1106*|APC_uc010jbz.2_Nonsense_Mutation_p.G823*|APC_uc010jca.2_Nonsense_Mutation_p.G406*	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1106	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.G1106fs*20(1)|p.G1106*(1)|p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		CAGGTCACGGGGAGCCAATGG	0.393		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			18	6					1.67942e-08	1.76112e-08	0.006122	1	0
MCC	4163	broad.mit.edu	37	5	112399763	112399763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:112399763C>T	uc003kqj.3	-	12	2091	c.1561G>A	c.(1561-1563)GAC>AAC	p.D521N	MCC_uc003kqk.3_RNA|MCC_uc003kql.3_Missense_Mutation_p.D711N|MCC_uc011cwb.1_Missense_Mutation_p.D521N	NM_002387	NP_002378	P23508	CRCM_HUMAN	mutated in colorectal cancers isoform 2	521					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of epithelial cell migration|negative regulation of epithelial cell proliferation|Wnt receptor signaling pathway	cytoplasm|nucleus|plasma membrane	protein binding|receptor activity			ovary(1)	1		all_cancers(142;5.89e-08)|all_epithelial(76;3.57e-11)|all_lung(232;0.000605)|Lung NSC(810;0.000697)|Colorectal(10;0.00146)|Prostate(80;0.00174)|Ovarian(225;0.0175)|Breast(839;0.198)		OV - Ovarian serous cystadenocarcinoma(64;2.04e-54)|Epithelial(69;9.69e-49)|all cancers(49;6.25e-44)|COAD - Colon adenocarcinoma(37;0.0432)|Colorectal(14;0.0766)		CAGCTGCCGTCCAGCTTCATG	0.607													31	10					0	0	0.013726	0	0
KCNN2	3781	broad.mit.edu	37	5	113740319	113740319	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:113740319T>A	uc003kqo.2	+	3	1224	c.767T>A	c.(766-768)ATT>AAT	p.I256N		NM_021614	NP_067627	Q9H2S1	KCNN2_HUMAN	small conductance calcium-activated potassium	256	Helical; Name=Segment S4; (Potential).					integral to membrane	calmodulin binding|small conductance calcium-activated potassium channel activity			ovary(2)	2		all_cancers(142;2.86e-05)|all_epithelial(76;9.33e-06)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Breast(839;0.159)|Lung NSC(810;0.174)|all_lung(232;0.206)		OV - Ovarian serous cystadenocarcinoma(64;1.89e-08)|Epithelial(69;2.04e-08)|all cancers(49;3.74e-06)|COAD - Colon adenocarcinoma(37;0.142)|Colorectal(14;0.195)		GATGTGGATATTATTTTATCT	0.438													40	6					0	0	0.006999	0	0
FBN2	2201	broad.mit.edu	37	5	127863635	127863635	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:127863635C>T	uc003kuu.2	-	4	901	c.462G>A	c.(460-462)ATG>ATA	p.M154I	FBN2_uc003kuv.2_Missense_Mutation_p.M121I|FBN2_uc003kuw.3_Missense_Mutation_p.M154I|FBN2_uc003kux.1_Missense_Mutation_p.M154I	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	154	EGF-like 2.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		TCCCACCATTCATGCATCTCA	0.368													22	8					0	0	0.004656	0	0
FAM53C	51307	broad.mit.edu	37	5	137680697	137680697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:137680697C>T	uc003lcv.2	+	4	790	c.320C>T	c.(319-321)CCT>CTT	p.P107L	FAM53C_uc003lcw.2_Missense_Mutation_p.P107L|FAM53C_uc011cyq.1_Intron|FAM53C_uc011cyr.1_Intron	NM_001135647	NP_001129119	Q9NYF3	FA53C_HUMAN	hypothetical protein LOC51307	107										ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			GAGAAGCTTCCTGTGCCCCCT	0.662													26	9					0	0	0.004656	0	0
CTNNA1	1495	broad.mit.edu	37	5	138260979	138260979	+	Silent	SNP	C	T	T	rs142503438	byFrequency	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:138260979C>T	uc003ldh.2	+	13	1877	c.1782C>T	c.(1780-1782)GCC>GCT	p.A594A	CTNNA1_uc011cyx.1_Silent_p.A491A|CTNNA1_uc011cyy.1_Silent_p.A471A|CTNNA1_uc003ldi.2_Silent_p.A292A|CTNNA1_uc003ldj.2_Silent_p.A594A|CTNNA1_uc003ldl.2_Silent_p.A224A	NM_001903	NP_001894	P35221	CTNA1_HUMAN	catenin, alpha 1	594					adherens junction organization|apical junction assembly|cell adhesion|cellular response to indole-3-methanol|muscle cell differentiation|positive regulation of muscle cell differentiation	actin cytoskeleton|catenin complex|cytosol	beta-catenin binding|cadherin binding|gamma-catenin binding|structural molecule activity|vinculin binding			breast(6)|ovary(2)|large_intestine(2)|kidney(1)	11			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			TAGAAGCAGCCGTGGAAGCCC	0.557													28	4					0	0	0.007291	0	0
MATR3	9782	broad.mit.edu	37	5	138651821	138651821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:138651821C>T	uc003ldu.2	+	8	1500	c.1073C>T	c.(1072-1074)CCT>CTT	p.P358L	MATR3_uc010jfb.2_Missense_Mutation_p.P358L|MATR3_uc003ldt.2_Missense_Mutation_p.P20L|MATR3_uc003ldw.2_Missense_Mutation_p.P358L|MATR3_uc003ldx.2_Missense_Mutation_p.P358L|MATR3_uc010jfc.2_Missense_Mutation_p.P358L|MATR3_uc003ldy.2_Missense_Mutation_p.P35L|MATR3_uc011czb.1_Missense_Mutation_p.P70L|MATR3_uc003ldz.2_Missense_Mutation_p.P358L|MATR3_uc003lea.2_Missense_Mutation_p.P358L|MATR3_uc003leb.2_Missense_Mutation_p.P20L|MATR3_uc003lec.2_Missense_Mutation_p.P35L	NM_199189	NP_954659	P43243	MATR3_HUMAN	matrin 3	358						nuclear inner membrane|nuclear matrix	nucleotide binding|protein binding|RNA binding|structural molecule activity|zinc ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)			ATTCTGGGACCTCCACCTCCC	0.413													37	9					0	0	0.007835	0	0
SLC4A9	83697	broad.mit.edu	37	5	139741433	139741433	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:139741433C>T	uc003lfm.2	+	4	653	c.618C>T	c.(616-618)GCC>GCT	p.A206A	SLC4A9_uc003lfj.2_Silent_p.A182A|SLC4A9_uc011czg.1_Silent_p.A182A|SLC4A9_uc003lfl.2_Silent_p.A182A|SLC4A9_uc003lfk.2_Silent_p.A182A	NM_031467	NP_113655	Q96Q91	B3A4_HUMAN	solute carrier family 4, sodium bicarbonate	206	Cytoplasmic (Potential).					integral to membrane|plasma membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			large_intestine(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGAGGAAGCCCCCCTGAGGG	0.368													64	11					0	0	0.014410	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203161	140203161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:140203161G>A	uc003lhl.2	+	1	1801	c.1801G>A	c.(1801-1803)GGC>AGC	p.G601S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.G601S|PCDHA5_uc003lhj.1_Missense_Mutation_p.G601S	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	601	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCCTGATTCGGGCTACAACGC	0.672													31	13					0	0	0.009535	0	0
PCDHB4	56131	broad.mit.edu	37	5	140503930	140503930	+	Missense_Mutation	SNP	G	A	A	rs140862802		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:140503930G>A	uc003lip.1	+	1	2350	c.2350G>A	c.(2350-2352)GAA>AAA	p.E784K		NM_018938	NP_061761	Q9Y5E5	PCDB4_HUMAN	protocadherin beta 4 precursor	784	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	cytoplasm|integral to plasma membrane|intermediate filament cytoskeleton	calcium ion binding	p.E784K(1)		upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAAGTTAAGGAAAACCCCAA	0.448													18	10					0	0	0.008871	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531414	140531414	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:140531414G>A	uc003lir.2	+	1	1576	c.1576G>A	c.(1576-1578)GAG>AAG	p.E526K	PCDHB6_uc011dah.1_Missense_Mutation_p.E390K	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	526	Cadherin 5.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCAGTCTTTCGAGTTCCGCGT	0.672													54	11					0	0	0.014410	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552480	140552480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:140552480G>A	uc003lit.2	+	1	238	c.64G>A	c.(64-66)GGA>AGA	p.G22R		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	22					calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTATTTCTGGGAATGTCTTG	0.483													30	10					0	0	0.009535	0	0
PCDHB12	56124	broad.mit.edu	37	5	140590315	140590315	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:140590315C>T	uc003liz.2	+	1	2025	c.1836C>T	c.(1834-1836)CCC>CCT	p.P612P	PCDHB12_uc011dak.1_Silent_p.P275P	NM_018932	NP_061755	Q9Y5F1	PCDBC_HUMAN	protocadherin beta 12 precursor	612	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(2)|ovary(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCACGGAGCCCGGGCTATTCG	0.701													47	44					0	0	0.014410	0	0
PCDHGA9	56107	broad.mit.edu	37	5	140782949	140782949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:140782949G>A	uc003lkh.1	+	1	430	c.430G>A	c.(430-432)GAA>AAA	p.E144K	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc011dax.1_Missense_Mutation_p.E144K	NM_018921	NP_061744	Q9Y5G4	PCDG9_HUMAN	protocadherin gamma subfamily A, 9 isoform 1	144	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAAATTAACGAAATCGCGGT	0.473													43	15					0	0	0.007835	0	0
HDAC3	8841	broad.mit.edu	37	5	141004874	141004874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:141004874G>A	uc003llf.2	-	14	1184	c.1118C>T	c.(1117-1119)CCT>CTT	p.P373L	HDAC3_uc003lle.1_Missense_Mutation_p.P316L	NM_003883	NP_003874	O15379	HDAC3_HUMAN	histone deacetylase 3	373					anti-apoptosis|cellular lipid metabolic process|negative regulation of cell cycle|negative regulation of JNK cascade|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|spindle assembly|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|spindle microtubule|transcriptional repressor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|transcription corepressor activity|transcription factor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Vorinostat(DB02546)	CTGGACACTAGGTGCATGGTT	0.502													91	20					0	0	0.014410	0	0
TCERG1	10915	broad.mit.edu	37	5	145878238	145878238	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:145878238A>G	uc003lob.2	+	16	2411	c.2371A>G	c.(2371-2373)AGA>GGA	p.R791G	TCERG1_uc003loc.2_Missense_Mutation_p.R770G	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	791					regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TTCGAAGACCAGAGGTGAGAA	0.403													14	4					0	0	0.004990	0	0
FAT2	2196	broad.mit.edu	37	5	150922489	150922489	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:150922489C>T	uc003lue.3	-	9	8212	c.8199G>A	c.(8197-8199)GAG>GAA	p.E2733E	GM2A_uc011dcs.1_Intron	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	2733	Cadherin 24.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CCTTGTTGCTCTCAGGTGTAG	0.507													42	8					0	0	0.014410	0	0
KIF4B	285643	broad.mit.edu	37	5	154394896	154394896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:154394896G>A	uc010jih.1	+	1	1637	c.1477G>A	c.(1477-1479)GAA>AAA	p.E493K		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	493	Potential.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TACTGCGGTAGAAGAAGAAGC	0.453													43	13					0	0	0.014410	0	0
GABRA6	2559	broad.mit.edu	37	5	161118971	161118971	+	Missense_Mutation	SNP	C	T	T	rs77320885		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:161118971C>T	uc003lyu.2	+	8	1189	c.851C>T	c.(850-852)ACC>ATC	p.T284I	GABRA6_uc003lyv.2_Missense_Mutation_p.T55I	NM_000811	NP_000802	Q16445	GBRA6_HUMAN	gamma-aminobutyric acid A receptor, alpha 6	284	Helical; (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity			ovary(7)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTAACTATGACCACTTTGAGC	0.403										TCGA Ovarian(5;0.080)			33	9					0	0	0.009535	0	0
GABRG2	2566	broad.mit.edu	37	5	161580138	161580138	+	Nonsense_Mutation	SNP	C	T	T	rs121909674		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:161580138C>T	uc003lyz.3	+	9	1526	c.1168C>T	c.(1168-1170)CAA>TAA	p.Q390*	GABRG2_uc010jjc.2_Nonsense_Mutation_p.Q438*|GABRG2_uc003lyy.3_Nonsense_Mutation_p.Q398*|GABRG2_uc011dej.1_Nonsense_Mutation_p.Q295*	NM_000816	NP_000807	P18507	GBRG2_HUMAN	gamma-aminobutyric acid A receptor, gamma 2	390	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(4)|skin(1)	5	Renal(175;0.000319)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0734)|OV - Ovarian serous cystadenocarcinoma(192;0.135)|Epithelial(171;0.136)		AGCAACCATTCAAATGAATAA	0.483													40	9					0	0	0.006230	0	0
ZNF354B	117608	broad.mit.edu	37	5	178311020	178311020	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:178311020C>T	uc003mjl.2	+	5	1793	c.1567C>T	c.(1567-1569)CGA>TGA	p.R523*	ZNF354B_uc003mjm.2_Nonsense_Mutation_p.R523*	NM_058230	NP_478137	Q96LW1	Z354B_HUMAN	zinc finger protein 354B	523	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAAACCATATCGATGTTTAGA	0.383													13	8					0	0	0.001855	0	0
RREB1	6239	broad.mit.edu	37	6	7231902	7231902	+	Silent	SNP	C	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:7231902C>G	uc003mxc.2	+	10	3960	c.3570C>G	c.(3568-3570)ACC>ACG	p.T1190T	RREB1_uc003mxb.2_Silent_p.T1190T|RREB1_uc010jnx.2_Silent_p.T1190T	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	1190					multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CCACAGACACCAACAAGTTCA	0.642													10	23					0	0	0.008291	0	0
DSP	1832	broad.mit.edu	37	6	7578051	7578051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:7578051G>A	uc003mxp.1	+	21	3196	c.2917G>A	c.(2917-2919)GAA>AAA	p.E973K	DSP_uc003mxq.1_Missense_Mutation_p.E973K	NM_004415	NP_004406	P15924	DESP_HUMAN	desmoplakin isoform I	973	Globular 1.				cellular component disassembly involved in apoptosis|keratinocyte differentiation|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural constituent of cytoskeleton			central_nervous_system(6)|ovary(2)|skin(1)	9	Ovarian(93;0.0584)	all_hematologic(90;0.236)		OV - Ovarian serous cystadenocarcinoma(45;0.000508)		CTCAGGACTGGAAACTCTGCT	0.408													108	11					0	0	0.014410	0	0
NEDD9	4739	broad.mit.edu	37	6	11213690	11213690	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:11213690G>T	uc003mzv.2	-	2	450	c.283C>A	c.(283-285)CCA>ACA	p.P95T	NEDD9_uc010joz.2_Missense_Mutation_p.P95T|NEDD9_uc003mzw.3_5'UTR|NEDD9_uc003mzx.2_Missense_Mutation_p.P95T	NM_006403	NP_006394	Q14511	CASL_HUMAN	neural precursor cell expressed, developmentally	95					actin filament bundle assembly|cell adhesion|cell division|integrin-mediated signaling pathway|mitosis|regulation of growth	cell cortex|focal adhesion|Golgi apparatus|lamellipodium|nucleus	protein binding				0	Breast(50;0.0768)|Ovarian(93;0.152)	all_hematologic(90;0.135)	Epithelial(50;0.0647)|all cancers(50;0.179)			TGTGGGTTTGGCACTTGATAG	0.562													68	103					1.2582e-26	1.34733e-26	0.014410	1	0
PHACTR1	221692	broad.mit.edu	37	6	12718995	12718995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:12718995G>A	uc010jpc.2	+	3	351	c.19G>A	c.(19-21)GAT>AAT	p.D7N	PHACTR1_uc011dir.1_Missense_Mutation_p.D7N|PHACTR1_uc003nag.1_Missense_Mutation_p.D7N|PHACTR1_uc003nah.1_Missense_Mutation_p.D7N|PHACTR1_uc003nai.2_Missense_Mutation_p.D7N	NM_030948	NP_112210	Q9C0D0	PHAR1_HUMAN	phosphatase and actin regulator 1	7						cell junction|cytoplasm|synapse	actin binding|protein phosphatase inhibitor activity				0	Breast(50;0.0427)|Ovarian(93;0.12)	all_hematologic(90;0.122)|Lung SC(78;0.195)	Epithelial(50;0.146)|BRCA - Breast invasive adenocarcinoma(129;0.239)			TCCCAAAATGGATTATTTTCT	0.353													215	30					0	0	0.014410	0	0
GPLD1	2822	broad.mit.edu	37	6	24460608	24460608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:24460608C>T	uc003ned.1	-	12	1018	c.907G>A	c.(907-909)GAT>AAT	p.D303N	GPLD1_uc010jpr.1_Missense_Mutation_p.D140N|GPLD1_uc010jps.1_Missense_Mutation_p.D303N	NM_001503	NP_001494	P80108	PHLD_HUMAN	glycosylphosphatidylinositol specific	303						extracellular region	glycosylphosphatidylinositol phospholipase D activity			ovary(2)|kidney(1)	3						CTGTGAAAATCATTTTTCTGC	0.363													77	11					0	0	0.014410	0	0
HLA-F	3134	broad.mit.edu	37	6	29691462	29691462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:29691462C>T	uc010jrl.2	+	2	216	c.92C>T	c.(91-93)ACC>ATC	p.T31I	HLA-F_uc003nnm.3_Missense_Mutation_p.T31I|HLA-F_uc003nno.3_Missense_Mutation_p.T31I|HLA-F_uc011dlx.1_Missense_Mutation_p.T31I|HLA-F_uc011dly.1_RNA	NM_018950	NP_061823	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	31	Alpha-1.|Extracellular (Potential).				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						TATTTCAGCACCGCTGTGTCG	0.701													22	3					0	0	0.007291	0	0
GNL1	2794	broad.mit.edu	37	6	30515241	30515241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:30515241G>A	uc003nqh.2	-	9	2194	c.1166C>T	c.(1165-1167)TCC>TTC	p.S389F	GNL1_uc011dmi.1_Missense_Mutation_p.S186F|GNL1_uc011dmj.1_Missense_Mutation_p.S387F|GNL1_uc011dmk.1_Missense_Mutation_p.S44F	NM_005275	NP_005266	P36915	GNL1_HUMAN	guanine nucleotide binding protein-like 1	389	G.				response to DNA damage stimulus|signal transduction|T cell mediated immunity	extracellular space|intracellular	GTP binding|structural molecule activity			ovary(3)	3						CGGGGTTCTGGAGACACTCAC	0.527													135	16					0	0	0.014410	0	0
BTNL2	56244	broad.mit.edu	37	6	32372808	32372809	+	Missense_Mutation	DNP	TG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:32372808_32372809TG>AA	uc003obg.1	-	2	334_335	c.334_335CA>TT	c.(334-336)CAC>TTC	p.H112F	BTNL2_uc010jty.1_Intron|BTNL2_uc010jtz.1_Intron|BTNL2_uc010jua.1_Intron	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	112	Ig-like V-type 1.|Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						CTGGATGTTGTGTATCTTCAGT	0.49													120	20					0	0	0.004672	0	0
DEF6	50619	broad.mit.edu	37	6	35265704	35265704	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:35265704G>C	uc003okk.2	+	1	110	c.71G>C	c.(70-72)GGC>GCC	p.G24A	DEF6_uc010jvs.2_Missense_Mutation_p.G24A|DEF6_uc010jvt.2_5'UTR	NM_022047	NP_071330	Q9H4E7	DEFI6_HUMAN	differentially expressed in FDCP 6 homolog	24						cytoplasm|nucleus|plasma membrane					0						GAGAAGAGTGGCAAAGTCTCC	0.687													13	4					0	0	0.004007	0	0
FKBP5	2289	broad.mit.edu	37	6	35558992	35558992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:35558992C>T	uc011dte.1	-	7	874	c.671G>A	c.(670-672)GGT>GAT	p.G224D	FKBP5_uc003okx.2_Missense_Mutation_p.G224D|FKBP5_uc011dtf.1_Missense_Mutation_p.G45D|FKBP5_uc003oky.2_Missense_Mutation_p.G224D|FKBP5_uc003okz.2_Intron	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	224	PPIase FKBP-type 2.				protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						CTCTCCAAAACCATATCTGAA	0.363													67	4					0	0	0.014410	0	0
FKBP5	2289	broad.mit.edu	37	6	35610510	35610510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:35610510C>T	uc011dte.1	-	2	295	c.92G>A	c.(91-93)AGG>AAG	p.R31K	FKBP5_uc003okx.2_Missense_Mutation_p.R31K|FKBP5_uc011dtf.1_Intron|FKBP5_uc003oky.2_Missense_Mutation_p.R31K|FKBP5_uc003okz.2_Missense_Mutation_p.R31K	NM_001145776	NP_001139248	Q13451	FKBP5_HUMAN	FK506 binding protein 5 isoform 1	31					protein folding	cytoplasm|membrane|nucleus	FK506 binding|heat shock protein binding|peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1						TAATACTCCCCTGTCTTTTTT	0.468													52	66					0	0	0.014410	0	0
DNAH8	1769	broad.mit.edu	37	6	38704979	38704979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:38704979C>T	uc003ooe.1	+	4	848	c.248C>T	c.(247-249)TCT>TTT	p.S83F		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CAGGGAGAATCTGAAAAACAT	0.323													40	10					0	0	0.008740	0	0
DNAH8	1769	broad.mit.edu	37	6	38793939	38793939	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:38793939G>A	uc003ooe.1	+	27	3804	c.3204G>A	c.(3202-3204)ATG>ATA	p.M1068I		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						CAGAGCCGATGAAATTGGCCT	0.299													14	2					0	0	0.002450	0	0
TTBK1	84630	broad.mit.edu	37	6	43251561	43251561	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:43251561C>T	uc003ouq.1	+	14	3362	c.3083C>T	c.(3082-3084)TCC>TTC	p.S1028F		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	1028						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GCCCCGGTGTCCCCGCTGGAG	0.677													25	27					0	0	0.004656	0	0
XPO5	57510	broad.mit.edu	37	6	43543521	43543521	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:43543521C>A	uc003ovp.2	-	1	292	c.81G>T	c.(79-81)CAG>CAT	p.Q27H	POLH_uc010jyu.2_5'Flank|POLH_uc011dvl.1_5'Flank|POLH_uc003ovq.3_5'Flank	NM_020750	NP_065801	Q9HAV4	XPO5_HUMAN	exportin 5	27	Necessary for interaction with Ran.				gene silencing by RNA	cytosol|nucleoplasm	protein binding|tRNA binding			skin(2)|breast(1)|kidney(1)	4	all_cancers(18;2.08e-05)|Lung NSC(15;0.000907)|all_lung(25;0.00243)		all cancers(41;0.000321)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0524)			GCCGGTAGCGCTGGGTGGAGT	0.672													49	72					1.78197e-24	1.90469e-24	0.014410	1	0
CLIC5	53405	broad.mit.edu	37	6	45882144	45882144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:45882144G>A	uc003oxv.3	-	5	992	c.886C>T	c.(886-888)CTT>TTT	p.L296F	CLIC5_uc003oxu.3_Missense_Mutation_p.L137F|CLIC5_uc003oxw.2_RNA|CLIC5_uc003oxx.2_Missense_Mutation_p.L137F	NM_001114086	NP_001107558	Q9NZA1	CLIC5_HUMAN	chloride intracellular channel 5 isoform a	296	GST C-terminal.				female pregnancy	actin cytoskeleton|cell cortex|chloride channel complex|Golgi apparatus|Golgi apparatus|insoluble fraction|microtubule organizing center	protein binding|voltage-gated chloride channel activity			ovary(1)|skin(1)	2						CCTCTTTCAAGAGCTGGCATG	0.473													35	30					0	0	0.003755	0	0
ENPP4	22875	broad.mit.edu	37	6	46107658	46107658	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:46107658G>A	uc003oxy.2	+	2	597	c.338G>A	c.(337-339)TGG>TAG	p.W113*		NM_014936	NP_055751	Q9Y6X5	ENPP4_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	113	Extracellular (Potential).					integral to membrane	hydrolase activity			ovary(3)|skin(1)	4						CCTTTTTGGTGGAATGAGGCA	0.443													22	44					0	0	0.012319	0	0
MEP1A	4224	broad.mit.edu	37	6	46766888	46766888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:46766888C>T	uc010jzh.1	+	5	274	c.232C>T	c.(232-234)CCC>TCC	p.P78S	MEP1A_uc011dwg.1_5'UTR|MEP1A_uc011dwh.1_Missense_Mutation_p.P106S|MEP1A_uc011dwi.1_5'UTR	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	78	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GTGGACGTTCCCCATTCCTTA	0.443													18	28					0	0	0.008871	0	0
TNFRSF21	27242	broad.mit.edu	37	6	47221154	47221154	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:47221154G>A	uc003oyv.2	-	4	1780	c.1347C>T	c.(1345-1347)TCC>TCT	p.S449S		NM_014452	NP_055267	O75509	TNR21_HUMAN	tumor necrosis factor receptor superfamily,	449	Cytoplasmic (Potential).|Death.				cellular lipid metabolic process	cytoplasm|integral to membrane	protein binding|receptor activity				0			Lung(136;0.189)			TGTACCCATTGGAGAAAGCAG	0.582													16	21					0	0	0.003163	0	0
C6orf138	442213	broad.mit.edu	37	6	47976640	47976640	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:47976640G>A	uc011dwm.1	-	2	671	c.586C>T	c.(586-588)CAG>TAG	p.Q196*	C6orf138_uc011dwn.1_5'UTR|C6orf138_uc003ozf.2_Nonsense_Mutation_p.Q213*	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	213						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						GAGTAGAGCTGGAGTTCTTGA	0.522													20	31					0	0	0.010504	0	0
HCRTR2	3062	broad.mit.edu	37	6	55039512	55039512	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:55039512C>T	uc003pcl.2	+	1	442	c.127C>T	c.(127-129)CTG>TTG	p.L43L	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzu.1_RNA	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	43	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			CCTGCGGTACCTGTGGAGGGA	0.542													40	44					0	0	0.005524	0	0
COL21A1	81578	broad.mit.edu	37	6	55990415	55990415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:55990415C>T	uc003pcs.2	-	14	1832	c.1600G>A	c.(1600-1602)GAA>AAA	p.E534K	COL21A1_uc010jzz.2_5'Flank|COL21A1_uc011dxg.1_5'Flank|COL21A1_uc011dxh.1_5'Flank|COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.E534K|COL21A1_uc003pcu.1_Missense_Mutation_p.E531K	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	534					cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			GCACCCATTTCACCCTAAAAG	0.274													6	6					0	0	0.001984	0	0
PRIM2	5558	broad.mit.edu	37	6	57246869	57246869	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:57246869A>C	uc003pdx.2	+	7	683	c.596A>C	c.(595-597)AAA>ACA	p.K199T	PRIM2_uc003pdw.2_Missense_Mutation_p.K199T	NM_000947	NP_000938	P49643	PRI2_HUMAN	DNA primase polypeptide 2	199					DNA replication, synthesis of RNA primer|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|nucleoplasm	4 iron, 4 sulfur cluster binding|DNA binding|DNA primase activity|metal ion binding				0				Colorectal(6;0.041)|READ - Rectum adenocarcinoma(7;0.193)		CGAGGAAGGAAAGTCTATTTG	0.408													12	45					0	0	0.013537	0	0
LGSN	51557	broad.mit.edu	37	6	63990574	63990574	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:63990574C>T	uc003peh.2	-	4	916	c.882G>A	c.(880-882)AGG>AGA	p.R294R	LGSN_uc003pei.2_Intron	NM_016571	NP_057655	Q5TDP6	LGSN_HUMAN	lengsin, lens protein with glutamine synthetase	294					glutamine biosynthetic process		glutamate-ammonia ligase activity			skin(2)	2					L-Glutamic Acid(DB00142)	AATTATATTTCCTTGCCACTT	0.418													21	21					0	0	0.010504	0	0
BAI3	577	broad.mit.edu	37	6	70071218	70071218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:70071218G>A	uc003pev.3	+	29	4501	c.4053G>A	c.(4051-4053)ATG>ATA	p.M1351I	BAI3_uc010kak.2_Missense_Mutation_p.M1351I|BAI3_uc011dxx.1_Missense_Mutation_p.M557I	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1351	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				AATTCAATATGAATCCCCCTG	0.428													45	54					0	0	0.014410	0	0
COL19A1	1310	broad.mit.edu	37	6	70897937	70897937	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:70897937C>T	uc003pfc.1	+	47	3132	c.3015C>T	c.(3013-3015)ATC>ATT	p.I1005I		NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	1005	Triple-helical region 5 (COL5).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						CTCCAGGCATCCCTGGCATTC	0.542													15	12					0	0	0.003163	0	0
FAM135A	57579	broad.mit.edu	37	6	71246050	71246050	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:71246050C>T	uc003pfj.2	+	17	4186	c.4053C>T	c.(4051-4053)ACC>ACT	p.T1351T	FAM135A_uc003pfi.2_Silent_p.T1155T|FAM135A_uc003pfh.2_Silent_p.T1138T|FAM135A_uc003pfl.2_Silent_p.T1018T|FAM135A_uc003pfn.2_Silent_p.T557T|FAM135A_uc003pfo.1_Silent_p.T722T|FAM135A_uc010kan.1_Silent_p.T130T	NM_001162529	NP_001156001	Q9P2D6	F135A_HUMAN	hypothetical protein LOC57579 isoform c	1351										central_nervous_system(1)	1						AACTTCATACCTTTCTGTCTC	0.348													17	34					0	0	0.008871	0	0
C6orf221	154288	broad.mit.edu	37	6	74072820	74072820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:74072820C>T	uc003pgt.3	+	2	225	c.172C>T	c.(172-174)CGG>TGG	p.R58W		NM_001017361	NP_001017361	Q587J8	ECAT1_HUMAN	hypothetical protein LOC154288	58	KH; atypical.									skin(2)	2						CCGCGCAGGCCGGGGCGGAGA	0.612													15	42					0	0	0.002450	0	0
EEF1A1	1915	broad.mit.edu	37	6	74228328	74228328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:74228328C>T	uc003phi.2	-	5	815	c.778G>A	c.(778-780)GGT>AGT	p.G260S	EEF1A1_uc003phd.2_5'UTR|EEF1A1_uc003phe.2_Missense_Mutation_p.G250S|EEF1A1_uc003phf.2_Missense_Mutation_p.G260S|EEF1A1_uc003phg.2_Missense_Mutation_p.G260S|EEF1A1_uc003phh.2_Missense_Mutation_p.G106S|EEF1A1_uc003phj.2_Missense_Mutation_p.G260S|EEF1A1_uc003phk.2_Missense_Mutation_p.G260S|EEF1A1_uc003phl.2_Intron|EEF1A1_uc003phm.1_Intron	NM_001402	NP_001393	P68104	EF1A1_HUMAN	eukaryotic translation elongation factor 1 alpha	260						cytosol|eukaryotic translation elongation factor 1 complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0						GGAACAGTACCAATACCTAAA	0.413											OREG0003895	type=REGULATORY REGION|Gene=D16891|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	28	32					0	0	0.009535	0	0
ME1	4199	broad.mit.edu	37	6	84025054	84025054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:84025054C>T	uc003pjy.2	-	6	785	c.679G>A	c.(679-681)GAA>AAA	p.E227K	ME1_uc011dzb.1_Missense_Mutation_p.E152K|ME1_uc011dzc.1_Missense_Mutation_p.E61K	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	227					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TCCATGAATTCGTCCAAAAAA	0.303													22	43					0	0	0.005443	0	0
PRSS35	167681	broad.mit.edu	37	6	84234157	84234157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:84234157G>A	uc003pjz.2	+	2	1160	c.997G>A	c.(997-999)GAT>AAT	p.D333N	PRSS35_uc010kbm.2_Missense_Mutation_p.D333N	NM_153362	NP_699193	Q8N3Z0	PRS35_HUMAN	protease, serine, 35 precursor	333	Peptidase S1.				proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1		all_cancers(76;0.000113)|Acute lymphoblastic leukemia(125;1.09e-08)|all_hematologic(105;3.12e-05)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0768)		CGAATCCAATGATCTCCTTTA	0.473													39	47					0	0	0.006999	0	0
SNAP91	9892	broad.mit.edu	37	6	84290235	84290235	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:84290235G>A	uc011dze.1	-	23	2550	c.2233C>T	c.(2233-2235)CCT>TCT	p.P745S	SNAP91_uc011dzd.1_Missense_Mutation_p.P243S|SNAP91_uc003pkb.2_Missense_Mutation_p.P654S|SNAP91_uc003pkc.2_Missense_Mutation_p.P715S|SNAP91_uc003pkd.2_Missense_Mutation_p.P438S|SNAP91_uc003pka.2_Missense_Mutation_p.P743S	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	745					clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		GCCATTGCAGGACTGGGTGGT	0.453													36	56					0	0	0.006999	0	0
SNAP91	9892	broad.mit.edu	37	6	84303343	84303343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:84303343G>A	uc011dze.1	-	17	1867	c.1550C>T	c.(1549-1551)CCA>CTA	p.P517L	SNAP91_uc011dzd.1_Missense_Mutation_p.P20L|SNAP91_uc003pkb.2_Missense_Mutation_p.P480L|SNAP91_uc003pkc.2_Missense_Mutation_p.P515L|SNAP91_uc003pkd.2_Intron|SNAP91_uc003pka.2_Missense_Mutation_p.P515L	NM_014841	NP_055656	O60641	AP180_HUMAN	synaptosomal-associated protein, 91kDa homolog	517	Ala-rich.				clathrin coat assembly	clathrin coat|coated pit|plasma membrane	1-phosphatidylinositol binding|clathrin binding			ovary(1)	1		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;2.91e-07)|all_hematologic(105;0.000337)|all_epithelial(107;0.0575)		BRCA - Breast invasive adenocarcinoma(397;0.0967)		TGCGGGAACTGGAGGGGCTGT	0.313													10	13					0	0	0.010729	0	0
C6orf165	154313	broad.mit.edu	37	6	88173777	88173777	+	Missense_Mutation	SNP	G	A	A	rs146287743		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:88173777G>A	uc003plv.2	+	13	1770	c.1678G>A	c.(1678-1680)GAT>AAT	p.D560N	SLC35A1_uc003plx.2_RNA|C6orf165_uc003plw.2_Missense_Mutation_p.D372N|C6orf165_uc010kbv.1_RNA	NM_001031743	NP_001026913	Q8IYR0	CF165_HUMAN	hypothetical protein LOC154313 isoform 1	560										central_nervous_system(1)	1		all_cancers(76;3.93e-06)|Acute lymphoblastic leukemia(125;3.55e-10)|Prostate(29;3.51e-09)|all_hematologic(105;3.29e-06)|all_epithelial(107;0.00575)		BRCA - Breast invasive adenocarcinoma(108;0.0419)		AGTACAAACTGATCTTAGTCA	0.413													16	27					0	0	0.006122	0	0
BACH2	60468	broad.mit.edu	37	6	90642343	90642343	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:90642343C>T	uc011eab.1	-	9	3119	c.2310G>A	c.(2308-2310)TTG>TTA	p.L770L	BACH2_uc003pnw.2_Silent_p.L770L	NM_021813	NP_068585	Q9BYV9	BACH2_HUMAN	BTB and CNC homology 1, basic leucine zipper	770						nucleus	protein dimerization activity|sequence-specific DNA binding			ovary(3)|pancreas(1)|lung(1)|skin(1)	6		all_cancers(76;7.37e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.0063)		BRCA - Breast invasive adenocarcinoma(108;0.0799)		CGCCTGGCTCCAAGCAGCAGG	0.642													40	37					0	0	0.005524	0	0
EPHA7	2045	broad.mit.edu	37	6	93956676	93956676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:93956676G>A	uc003poe.2	-	15	2801	c.2560C>T	c.(2560-2562)CGT>TGT	p.R854C	EPHA7_uc003pof.2_Missense_Mutation_p.R849C|EPHA7_uc011eac.1_Missense_Mutation_p.R850C	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	854	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		GCTGGTAAACGATAACCTTCT	0.393													16	29					0	0	0.003163	0	0
FUT9	10690	broad.mit.edu	37	6	96651295	96651295	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:96651295C>T	uc003pop.3	+	3	605	c.264C>T	c.(262-264)ATC>ATT	p.I88I		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	88	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		TGTTCAACATCCAAGGATGCC	0.448													36	47					0	0	0.005524	0	0
KLHL32	114792	broad.mit.edu	37	6	97587033	97587033	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:97587033T>A	uc010kcm.1	+	11	2210	c.1738T>A	c.(1738-1740)TTC>ATC	p.F580I	KLHL32_uc011ead.1_Missense_Mutation_p.F544I|KLHL32_uc003poz.2_Missense_Mutation_p.F136I|KLHL32_uc011eae.1_Missense_Mutation_p.F511I|KLHL32_uc003ppa.2_RNA	NM_052904	NP_443136	Q96NJ5	KLH32_HUMAN	kelch-like 32	580	Kelch 6.									ovary(3)|skin(1)	4		all_cancers(76;1.19e-06)|Acute lymphoblastic leukemia(125;5.83e-10)|all_hematologic(75;3.67e-07)|all_epithelial(107;0.00778)|Colorectal(196;0.122)		BRCA - Breast invasive adenocarcinoma(108;0.0558)		AGAAGAAGTATTCTATGGGCC	0.413													52	51					0	0	0.014410	0	0
FBXL4	26235	broad.mit.edu	37	6	99374369	99374370	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:99374369_99374370GA>AG	uc003ppf.1	-	3	853_854	c.495_496TC>CT	c.(493-498)AATCCA>AACTCA	p.P166S	FBXL4_uc003ppg.1_Missense_Mutation_p.P166S|FBXL4_uc003pph.1_5'UTR	NM_012160	NP_036292	Q9UKA2	FBXL4_HUMAN	F-box and leucine-rich repeat protein 4	166					ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex				skin(2)	2		all_cancers(76;1.56e-06)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00893)|Colorectal(196;0.069)|Lung NSC(302;0.197)		BRCA - Breast invasive adenocarcinoma(108;0.0413)		TCAGCTGGTGGATTTGGGGAAT	0.366													19	42					0	0	0.004672	0	0
SESN1	27244	broad.mit.edu	37	6	109319926	109319926	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:109319926G>A	uc003pst.3	-	5	677	c.585C>T	c.(583-585)TCC>TCT	p.S195S	SESN1_uc003psu.2_Silent_p.S254S	NM_014454	NP_055269	Q9Y6P5	SESN1_HUMAN	sestrin 1	195					cell cycle arrest|negative regulation of cell proliferation|response to DNA damage stimulus	nucleus				ovary(1)	1		all_cancers(87;6.45e-05)|Acute lymphoblastic leukemia(125;3.55e-10)|all_hematologic(75;1.68e-07)|all_epithelial(87;0.0106)|Colorectal(196;0.0637)		Epithelial(106;0.0014)|BRCA - Breast invasive adenocarcinoma(108;0.00146)|all cancers(137;0.0031)|OV - Ovarian serous cystadenocarcinoma(136;0.0117)		ATTCCGCAAGGGACCAGCTGT	0.388													35	37					0	0	0.004289	0	0
GPRC6A	222545	broad.mit.edu	37	6	117127855	117127855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:117127855G>A	uc003pxj.1	-	3	1035	c.1013C>T	c.(1012-1014)TCC>TTC	p.S338F	GPRC6A_uc003pxk.1_Intron|GPRC6A_uc003pxl.1_Missense_Mutation_p.S338F	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	338	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TTGAAGAAAGGAATGGAAAGA	0.408													26	36					0	0	0.003954	0	0
RFX6	222546	broad.mit.edu	37	6	117248364	117248364	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:117248364C>T	uc003pxm.2	+	17	2123	c.2060C>T	c.(2059-2061)CCC>CTC	p.P687L		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	687					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						CCCATTTATCCCACTCTCCCT	0.522													34	49					0	0	0.003271	0	0
THEMIS	387357	broad.mit.edu	37	6	128134831	128134831	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:128134831A>C	uc003qbi.2	-	5	1274	c.955T>G	c.(955-957)TTA>GTA	p.L319V	THEMIS_uc010kfa.2_Missense_Mutation_p.L222V|THEMIS_uc011ebt.1_Missense_Mutation_p.L319V|THEMIS_uc010kfb.2_Missense_Mutation_p.L284V	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	319	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						TCTGAAGCTAAGATTCTTGAT	0.453													40	44					0	0	0.005524	0	0
LAMA2	3908	broad.mit.edu	37	6	129766889	129766889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:129766889G>A	uc003qbn.2	+	44	6457	c.6352G>A	c.(6352-6354)GAA>AAA	p.E2118K	LAMA2_uc003qbo.2_Missense_Mutation_p.E2118K	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2118	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		ACCCATCAAGGAACTTGAGGA	0.378													15	19					0	0	0.002450	0	0
IL20RA	53832	broad.mit.edu	37	6	137329796	137329796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:137329796C>T	uc003qhj.2	-	5	1097	c.664G>A	c.(664-666)GTC>ATC	p.V222I	IL20RA_uc011edl.1_Missense_Mutation_p.V173I|IL20RA_uc003qhk.2_Missense_Mutation_p.V111I|IL20RA_uc003qhi.2_5'UTR	NM_014432	NP_055247	Q9UHF4	I20RA_HUMAN	interleukin 20 receptor, alpha precursor	222	Extracellular (Potential).|Fibronectin type-III 2.					integral to membrane	receptor activity			ovary(2)|skin(2)	4	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.000351)|OV - Ovarian serous cystadenocarcinoma(155;0.00459)		GGCCCTGGGACGAAGGACTCC	0.542													37	56					0	0	0.004878	0	0
NMBR	4829	broad.mit.edu	37	6	142409773	142409773	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:142409773T>C	uc003qiu.2	-	1	164	c.23A>G	c.(22-24)AAC>AGC	p.N8S		NM_002511	NP_002502	P28336	NMBR_HUMAN	neuromedin B receptor	8	Extracellular (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	cytoplasm|integral to plasma membrane	bombesin receptor activity			central_nervous_system(3)|breast(1)	4	Breast(32;0.155)			OV - Ovarian serous cystadenocarcinoma(155;9.93e-06)|GBM - Glioblastoma multiforme(68;0.0013)		CACCGAGAGGTTGGAAAGAGA	0.607													15	26					0	0	0.004007	0	0
GPR126	57211	broad.mit.edu	37	6	142737022	142737023	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:142737022_142737023GG>AA	uc010khc.2	+	20	3170_3171	c.2759_2760GG>AA	c.(2758-2760)TGG>TAA	p.W920*	GPR126_uc010khd.2_Nonsense_Mutation_p.W892*|GPR126_uc010khe.2_Nonsense_Mutation_p.W920*|GPR126_uc010khf.2_Nonsense_Mutation_p.W892*	NM_020455	NP_065188	Q86SQ4	GP126_HUMAN	G protein-coupled receptor 126 alpha 1	920	Helical; Name=2; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(32;0.176)			OV - Ovarian serous cystadenocarcinoma(155;9.33e-06)|GBM - Glioblastoma multiforme(68;0.00121)		CTAGATGGCTGGATCACCTCCT	0.465													42	70					0	0	0.004672	0	0
TFB1M	51106	broad.mit.edu	37	6	155618167	155618167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:155618167C>T	uc003qqj.3	-	4	530	c.466G>A	c.(466-468)GAA>AAA	p.E156K	TFB1M_uc003qqk.2_Intron	NM_016020	NP_057104	Q8WVM0	TFB1M_HUMAN	transcription factor B1, mitochondrial	156					regulation of transcription, DNA-dependent|transcription, DNA-dependent	mitochondrial nucleoid	DNA binding|protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity			skin(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;1.48e-12)|BRCA - Breast invasive adenocarcinoma(81;0.0131)		GAAATATTTTCAAGCCACTTG	0.368													21	22					0	0	0.003330	0	0
LPA	4018	broad.mit.edu	37	6	160968946	160968946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:160968946C>T	uc003qtl.2	-	33	5299	c.5179G>A	c.(5179-5181)GGA>AGA	p.G1727R		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	4235	Kringle 38.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	CCCCGGTATCCTTTCCCATTC	0.488													20	34					0	0	0.008871	0	0
TTLL2	83887	broad.mit.edu	37	6	167754748	167754748	+	Missense_Mutation	SNP	C	T	T	rs148357898		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr6:167754748C>T	uc003qvs.1	+	3	1448	c.1360C>T	c.(1360-1362)CCT>TCT	p.P454S	TTLL2_uc011egr.1_RNA	NM_031949	NP_114155	Q9BWV7	TTLL2_HUMAN	tubulin tyrosine ligase-like family, member 2	454					protein modification process		ATP binding|tubulin-tyrosine ligase activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(66;7.8e-06)|Ovarian(120;0.024)		OV - Ovarian serous cystadenocarcinoma(33;2.22e-20)|BRCA - Breast invasive adenocarcinoma(81;6.17e-07)|GBM - Glioblastoma multiforme(31;0.00492)		TGACTGTCTTCCTTATGATTC	0.493													26	38					0	0	0.004656	0	0
SDK1	221935	broad.mit.edu	37	7	4091411	4091412	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:4091411_4091412CC>TT	uc003smx.2	+	19	2999_3000	c.2860_2861CC>TT	c.(2860-2862)CCT>TTT	p.P954F	SDK1_uc010kso.2_Missense_Mutation_p.P230F	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	954	Fibronectin type-III 3.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		CTTCACCACCCCTGGGGACGGG	0.525													42	69					0	0	0.004672	0	0
NXPH1	30010	broad.mit.edu	37	7	8790861	8790861	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:8790861A>G	uc003srv.2	+	3	1189	c.278A>G	c.(277-279)AAC>AGC	p.N93S	NXPH1_uc011jxh.1_5'UTR	NM_152745	NP_689958	P58417	NXPH1_HUMAN	neurexophilin 1 precursor	93	II.					extracellular region				ovary(1)|central_nervous_system(1)	2		Ovarian(82;0.0628)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)		TGGCTGAGGAACTCCACAGAC	0.483													35	42					0	0	0.013726	0	0
SCIN	85477	broad.mit.edu	37	7	12666342	12666342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:12666342C>T	uc003ssn.3	+	8	1325	c.1115C>T	c.(1114-1116)CCC>CTC	p.P372L	SCIN_uc010ktt.2_RNA|SCIN_uc003sso.3_Missense_Mutation_p.P125L	NM_001112706	NP_001106177	Q9Y6U3	ADSV_HUMAN	scinderin isoform 1	372	Ca(2+)-dependent actin binding.				actin filament capping|actin filament severing|actin nucleation|calcium ion-dependent exocytosis|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of megakaryocyte differentiation|positive regulation of secretion|regulation of chondrocyte differentiation	cell cortex|cytoskeleton	1-phosphatidylinositol binding|actin filament binding|calcium ion binding|phosphatidylinositol-4,5-bisphosphate binding|phosphatidylserine binding			ovary(2)	2				UCEC - Uterine corpus endometrioid carcinoma (126;0.195)		AAACAAATTCCCTTTGATGCC	0.408													3	8					0	0	0.004672	0	0
TSPAN13	27075	broad.mit.edu	37	7	16823044	16823044	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:16823044C>T	uc003stq.2	+	6	785	c.543C>T	c.(541-543)ATC>ATT	p.I181I		NM_014399	NP_055214	O95857	TSN13_HUMAN	tetraspan NET-6	181	Helical; (Potential).					integral to plasma membrane|membrane fraction				ovary(1)	1	Lung NSC(10;0.0494)|all_lung(11;0.109)			UCEC - Uterine corpus endometrioid carcinoma (126;0.188)		CATTCCAGATCCTGGGTGTTT	0.373													36	48					0	0	0.003271	0	0
TAX1BP1	8887	broad.mit.edu	37	7	27831771	27831771	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:27831771C>T	uc003szl.2	+	9	1343	c.1185C>T	c.(1183-1185)CGC>CGT	p.R395R	TAX1BP1_uc011jzo.1_Silent_p.R395R|TAX1BP1_uc003szk.2_Silent_p.R395R|TAX1BP1_uc011jzp.1_Silent_p.R238R	NM_006024	NP_006015	Q86VP1	TAXB1_HUMAN	Tax1 (human T-cell leukemia virus type I)	395	Oligomerization.|Potential.				anti-apoptosis|apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production	cytosol	identical protein binding|kinase binding|zinc ion binding			breast(1)	1			GBM - Glioblastoma multiforme(3;0.0823)			ATACTGCACGCTTGGAAAACG	0.413													106	154					0	0	0.014410	0	0
CHN2	1124	broad.mit.edu	37	7	29546880	29546880	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:29546880C>T	uc003szz.2	+	11	1465	c.1028C>T	c.(1027-1029)CCA>CTA	p.P343L	CHN2_uc011jzs.1_Missense_Mutation_p.P418L|CHN2_uc010kva.2_Intron|CHN2_uc010kvb.2_Intron|CHN2_uc010kvc.2_Missense_Mutation_p.P308L|CHN2_uc011jzt.1_Missense_Mutation_p.P356L|CHN2_uc010kvd.2_Missense_Mutation_p.P199L|CHN2_uc011jzu.1_Missense_Mutation_p.P328L|CHN2_uc010kvg.2_Intron|CHN2_uc010kvh.2_Intron|CHN2_uc010kvi.2_Intron|CHN2_uc010kve.2_Intron|CHN2_uc003taa.2_Missense_Mutation_p.P207L|CHN2_uc010kvf.2_Missense_Mutation_p.P149L|CHN2_uc010kvj.2_Intron|CHN2_uc010kvk.2_Missense_Mutation_p.P18L|CHN2_uc010kvl.2_Intron|CHN2_uc010kvm.2_Missense_Mutation_p.P162L|CHN2_uc011jzv.1_Missense_Mutation_p.P136L	NM_004067	NP_004058	P52757	CHIO_HUMAN	beta chimerin isoform 2	343	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|membrane	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)	2						AATGTCTATCCAGACATAAAC	0.388													18	18					0	0	0.006122	0	0
EEPD1	80820	broad.mit.edu	37	7	36194146	36194146	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:36194146C>T	uc003tfa.2	+	2	853	c.213C>T	c.(211-213)ATC>ATT	p.I71I		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	71					DNA repair		DNA binding				0						GAGAGTATATCGGTGGCTTCA	0.592													36	54					0	0	0.003755	0	0
AMPH	273	broad.mit.edu	37	7	38424445	38424445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:38424445C>T	uc003tgu.2	-	21	2131	c.2062G>A	c.(2062-2064)GAG>AAG	p.E688K	AMPH_uc003tgv.2_Missense_Mutation_p.E646K|AMPH_uc003tgt.2_Missense_Mutation_p.E573K	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	688	SH3.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						GTGAAGTTCTCTGGAAAGAGG	0.468													38	54					0	0	0.008740	0	0
COBL	23242	broad.mit.edu	37	7	51096201	51096202	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:51096201_51096202GG>AA	uc003tpr.3	-	10	2776_2777	c.2591_2592CC>TT	c.(2590-2592)TCC>TTT	p.S864F	COBL_uc003tps.2_Missense_Mutation_p.S921F|COBL_uc011kcl.1_Missense_Mutation_p.S864F|COBL_uc003tpp.3_Missense_Mutation_p.S650F|COBL_uc003tpq.3_Missense_Mutation_p.S805F|COBL_uc003tpo.3_Missense_Mutation_p.S406F	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	864										skin(3)|ovary(2)	5	Glioma(55;0.08)					CATACTGGCTGGACGTTCTTCT	0.574													44	70					0	0	0.004672	0	0
EGFR	1956	broad.mit.edu	37	7	55211097	55211097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:55211097G>A	uc003tqk.2	+	3	586	c.340G>A	c.(340-342)GAA>AAA	p.E114K	EGFR_uc003tqh.2_Missense_Mutation_p.E114K|EGFR_uc003tqi.2_Missense_Mutation_p.E114K|EGFR_uc003tqj.2_Missense_Mutation_p.E114K|EGFR_uc010kzg.1_Missense_Mutation_p.E114K|EGFR_uc011kco.1_Missense_Mutation_p.E61K	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	114	Approximate.|Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity	p.V30_R297>G(5)		lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	TATGTACTACGAAAATTCCTA	0.458		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			27	51					0	0	0.005443	0	0
ZNF92	168374	broad.mit.edu	37	7	64864771	64864771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:64864771G>A	uc003ttz.2	+	4	1887	c.1744G>A	c.(1744-1746)GAG>AAG	p.E582K	ZNF92_uc003tua.2_Missense_Mutation_p.E513K|ZNF92_uc010kzu.2_Missense_Mutation_p.E550K|ZNF92_uc003tub.2_Missense_Mutation_p.E506K	NM_152626	NP_689839	Q03936	ZNF92_HUMAN	zinc finger protein 92 isoform 2	582	C2H2-type 16; degenerate.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(55;0.159)				TTATACTAAAGAGAAACTACA	0.348													22	48					0	0	0.003330	0	0
AUTS2	26053	broad.mit.edu	37	7	70252365	70252365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:70252365G>A	uc003tvw.3	+	18	3222	c.2479G>A	c.(2479-2481)GAT>AAT	p.D827N	AUTS2_uc003tvx.3_Missense_Mutation_p.D803N|AUTS2_uc011keg.1_Missense_Mutation_p.D279N	NM_015570	NP_056385	Q8WXX7	AUTS2_HUMAN	autism susceptibility candidate 2 isoform 1	827										ovary(2)|central_nervous_system(1)	3		all_cancers(73;0.0264)|all_epithelial(88;0.0198)|Lung NSC(55;0.0599)|all_lung(88;0.093)		LUSC - Lung squamous cell carcinoma(90;0.082)|Lung(90;0.186)		TCATGACAGAGATAGAGATGT	0.582													24	10					0	0	0.004656	0	0
WBSCR17	64409	broad.mit.edu	37	7	71036297	71036297	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:71036297C>T	uc003tvy.2	+	6	990	c.990C>T	c.(988-990)TTC>TTT	p.F330F	WBSCR17_uc003tvz.2_Silent_p.F29F	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	330	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				GCTGCTCGTTCGTGGTCAACA	0.507													39	63					0	0	0.005524	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130755	75130755	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:75130755G>A	uc011kfy.1	+	5	841	c.705G>A	c.(703-705)GGG>GGA	p.G235G		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	235											0						TCCTGTATGGGAAGAACCGCT	0.552													85	112					0	0	0.014410	0	0
CACNA2D1	781	broad.mit.edu	37	7	81591339	81591339	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:81591339A>G	uc003uhr.1	-	36	3093	c.2837T>C	c.(2836-2838)GTT>GCT	p.V946A	CACNA2D1_uc011kgy.1_Missense_Mutation_p.V158A	NM_000722	NP_000713	P54289	CA2D1_HUMAN	calcium channel, voltage-dependent, alpha	958	Extracellular (Potential).					voltage-gated calcium channel complex	metal ion binding			ovary(5)|pancreas(1)	6					Felodipine(DB01023)|Gabapentin(DB00996)|Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Nifedipine(DB01115)	CTCCATCTCAACTTGGGTGGC	0.473													28	40					0	0	0.008361	0	0
PCLO	27445	broad.mit.edu	37	7	82453677	82453677	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:82453677G>A	uc003uhx.2	-	19	14760	c.14471C>T	c.(14470-14472)CCT>CTT	p.P4824L	PCLO_uc003uhv.2_Missense_Mutation_p.P4824L|PCLO_uc003uht.1_Missense_Mutation_p.P266L|PCLO_uc003uhu.1_Missense_Mutation_p.P245L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4686					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTCTTTGAGAGGATACCACCT	0.398													15	32					0	0	0.006122	0	0
PCLO	27445	broad.mit.edu	37	7	82579028	82579028	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:82579028G>A	uc003uhx.2	-	6	11165	c.10876C>T	c.(10876-10878)CCC>TCC	p.P3626S	PCLO_uc003uhv.2_Missense_Mutation_p.P3626S|PCLO_uc010lec.2_Missense_Mutation_p.P591S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3557					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTGAGATGGGTGAGTAAAGG	0.483													56	62					0	0	0.014410	0	0
PCLO	27445	broad.mit.edu	37	7	82785026	82785026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:82785026G>A	uc003uhx.2	-	2	1220	c.931C>T	c.(931-933)CCT>TCT	p.P311S	PCLO_uc003uhv.2_Missense_Mutation_p.P311S	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	301	Gln-rich.|Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGTTTTCCAGGAGTTGGTTGC	0.532													28	22					0	0	0.007291	0	0
ABCB1	5243	broad.mit.edu	37	7	87168615	87168615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:87168615C>T	uc003uiz.1	-	20	2784	c.2366G>A	c.(2365-2367)CGA>CAA	p.R789Q	ABCB1_uc011khc.1_Missense_Mutation_p.R725Q	NM_000927	NP_000918	P08183	MDR1_HUMAN	ATP-binding cassette, subfamily B, member 1	789	ABC transmembrane type-1 2.				G2/M transition of mitotic cell cycle|stem cell proliferation	apical plasma membrane|cell surface|Golgi membrane|integral to membrane|intercellular canaliculus|membrane fraction	ATP binding|protein binding|xenobiotic-transporting ATPase activity			ovary(4)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	Esophageal squamous(14;0.00164)				Adenosine triphosphate(DB00171)|Alfentanil(DB00802)|Arsenic trioxide(DB01169)|Atazanavir(DB01072)|Carvedilol(DB01136)|Colchicine(DB01394)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Dipyridamole(DB00975)|Estramustine(DB01196)|Flupenthixol(DB00875)|Imatinib(DB00619)|Itraconazole(DB01167)|Nicardipine(DB00622)|Propafenone(DB01182)|Quinacrine(DB01103)|Quinidine(DB00908)|Ranolazine(DB00243)|Rifampin(DB01045)|Roxithromycin(DB00778)|Saquinavir(DB01232)|Tamoxifen(DB00675)|Vinblastine(DB00570)	AACCATGTATCGGAGCCGCTT	0.522													45	39					0	0	0.014410	0	0
SAMD9L	219285	broad.mit.edu	37	7	92762825	92762825	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:92762825G>A	uc003umh.1	-	5	3676	c.2460C>T	c.(2458-2460)TCC>TCT	p.S820S	SAMD9L_uc003umj.1_Silent_p.S820S|SAMD9L_uc003umi.1_Silent_p.S820S|SAMD9L_uc010lfb.1_Silent_p.S820S|SAMD9L_uc003umk.1_Silent_p.S820S|SAMD9L_uc010lfc.1_Silent_p.S820S|SAMD9L_uc010lfd.1_Silent_p.S820S|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	820										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGCTAAAACGGAATGGATGG	0.378													33	43					0	0	0.009535	0	0
CCDC132	55610	broad.mit.edu	37	7	92887687	92887687	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:92887687T>G	uc003umo.2	+	8	687	c.559T>G	c.(559-561)TTA>GTA	p.L187V	CCDC132_uc003umq.2_RNA|CCDC132_uc003ump.2_Missense_Mutation_p.L157V|CCDC132_uc003umr.2_RNA|CCDC132_uc011khz.1_Intron|CCDC132_uc003umn.2_Missense_Mutation_p.L187V	NM_017667	NP_060137	Q96JG6	CC132_HUMAN	coiled-coil domain containing 132 isoform a	187											0	all_cancers(62;2.64e-11)|all_epithelial(64;1.4e-10)|Breast(17;0.000675)|Lung NSC(181;0.0618)|all_lung(186;0.0837)		STAD - Stomach adenocarcinoma(171;0.000302)			AGATGTACGGTTAAGTGAAAT	0.303													23	35					0	0	0.006320	0	0
COL1A2	1278	broad.mit.edu	37	7	94041417	94041417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:94041417G>A	uc003ung.1	+	24	1859	c.1388G>A	c.(1387-1389)GGA>GAA	p.G463E	COL1A2_uc011kib.1_Intron	NM_000089	NP_000080	P08123	CO1A2_HUMAN	alpha 2 type I collagen precursor	463			Missing (in OI2A).		axon guidance|blood vessel development|collagen fibril organization|leukocyte migration|odontogenesis|platelet activation|regulation of blood pressure|Rho protein signal transduction|skeletal system development|skin morphogenesis|transforming growth factor beta receptor signaling pathway	collagen type I|extracellular space|plasma membrane	extracellular matrix structural constituent|identical protein binding|platelet-derived growth factor binding|protein binding, bridging		COL1A2/PLAG1(3)	soft_tissue(3)|central_nervous_system(3)|ovary(2)|skin(1)	9	all_cancers(62;2.46e-09)|all_epithelial(64;2.7e-08)		STAD - Stomach adenocarcinoma(171;0.0031)		Collagenase(DB00048)	GGCCCCGCTGGAAAAGAAGGT	0.368										HNSCC(75;0.22)			5	12					0	0	0.001984	0	0
ZNF498	221785	broad.mit.edu	37	7	99217233	99217233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:99217233C>T	uc003url.1	+	4	331	c.4C>T	c.(4-6)CTT>TTT	p.L2F	ZNF498_uc003urm.1_5'UTR|ZNF498_uc010lge.1_5'UTR|ZNF498_uc003urn.2_RNA|ZNF498_uc010lgf.1_Missense_Mutation_p.L2F|ZNF498_uc003uro.1_5'Flank	NM_145115	NP_660090	Q6NSZ9	ZN498_HUMAN	zinc finger and SCAN domain containing 25	2					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_epithelial(64;1.95e-08)|Lung NSC(181;0.0066)|all_lung(186;0.011)|Esophageal squamous(72;0.0166)					TCTGAAGATGCTTAAAGAGCA	0.512													48	79					0	0	0.013114	0	0
SRRT	51593	broad.mit.edu	37	7	100483874	100483874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:100483874G>A	uc003uwy.2	+	14	1733	c.1465G>A	c.(1465-1467)GAG>AAG	p.E489K	SRRT_uc010lhl.1_Missense_Mutation_p.E488K|SRRT_uc003uxa.2_Missense_Mutation_p.E488K|SRRT_uc003uwz.2_Missense_Mutation_p.E489K	NM_015908	NP_056992	Q9BXP5	SRRT_HUMAN	arsenate resistance protein 2 isoform a	489					cell proliferation|primary miRNA processing|response to arsenic-containing substance	cytoplasm|nucleoplasm	protein binding			ovary(2)	2						CCAGCTCCGGGAGTGTGAGCT	0.582													17	26					0	0	0.007413	0	0
FBXL13	222235	broad.mit.edu	37	7	102665603	102665603	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:102665603G>A	uc003vaq.2	-	6	829	c.402C>T	c.(400-402)TCC>TCT	p.S134S	FBXL13_uc010liq.1_5'UTR|FBXL13_uc010lir.1_Silent_p.S134S|FBXL13_uc003var.2_RNA|FBXL13_uc003vas.2_Silent_p.S134S|FBXL13_uc003vav.2_RNA	NM_145032	NP_659469	Q8NEE6	FXL13_HUMAN	F-box and leucine-rich repeat protein 13 isoform	134											0						CAGGAAAATTGGATTCTTCTG	0.303													18	21					0	0	0.006122	0	0
NAPEPLD	222236	broad.mit.edu	37	7	102760641	102760641	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:102760641C>A	uc003vbc.2	-	3	652	c.324G>T	c.(322-324)AAG>AAT	p.K108N	NAPEPLD_uc003vbd.2_Missense_Mutation_p.K108N|NAPEPLD_uc011klj.1_Missense_Mutation_p.K181N|NAPEPLD_uc003vbe.2_RNA	NM_198990	NP_945341	Q6IQ20	NAPEP_HUMAN	N-acyl phosphatidylethanolamine phospholipase D	108					phospholipid catabolic process	membrane	metal ion binding			skin(1)	1						TAAAATATGGCTTAAGCACTG	0.403													33	67					3.03874e-20	3.23613e-20	0.003271	1	0
RELN	5649	broad.mit.edu	37	7	103197509	103197509	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:103197509C>T	uc003vca.2	-	38	5872	c.5712G>A	c.(5710-5712)ACG>ACA	p.T1904T	RELN_uc010liz.2_Silent_p.T1904T	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	1904					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AAAGTATATTCGTTGTTTGAG	0.403													27	34					0	0	0.004656	0	0
SYPL1	6856	broad.mit.edu	37	7	105732271	105732271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:105732271G>A	uc003vdp.2	-	6	842	c.760C>T	c.(760-762)CCA>TCA	p.P254S	SYPL1_uc003vdo.2_Missense_Mutation_p.P236S	NM_006754	NP_006745	Q16563	SYPL1_HUMAN	synaptophysin-like 1 isoform a	254	Cytoplasmic (Potential).				synaptic transmission	cytoplasmic vesicle membrane|integral to plasma membrane|melanosome|synaptic vesicle	transporter activity				0						GTAGGAGGTGGAATACCTCCT	0.403													19	28					0	0	0.010504	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518493	113518493	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:113518493A>G	uc010ljy.1	-	4	2685	c.2654T>C	c.(2653-2655)GTT>GCT	p.V885A		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	885					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TAATTCTTGAACCTGCCTAAG	0.358													22	28					0	0	0.012319	0	0
CFTR	1080	broad.mit.edu	37	7	117251758	117251758	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:117251758A>G	uc003vjd.2	+	20	3395	c.3263A>G	c.(3262-3264)AAC>AGC	p.N1088S	CFTR_uc011knq.1_Missense_Mutation_p.N494S	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	1088	Cytoplasmic (Potential).|ABC transmembrane type-1 2.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	CATACTGCCAACTGGTTCTTG	0.403									Cystic_Fibrosis				18	17					0	0	0.006122	0	0
TSPAN12	23554	broad.mit.edu	37	7	120450525	120450525	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:120450525G>A	uc003vjk.2	-	6	834	c.460C>T	c.(460-462)CAG>TAG	p.Q154*	TSPAN12_uc010lkj.2_Nonsense_Mutation_p.Q27*	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	154	Extracellular (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					ACCTCTCTCTGAAAAAAATTC	0.398													25	23					0	0	0.007291	0	0
LMOD2	442721	broad.mit.edu	37	7	123296126	123296126	+	Silent	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:123296126T>C	uc003vky.2	+	1	266	c.109T>C	c.(109-111)TTG>CTG	p.L37L		NM_207163	NP_997046	Q6P5Q4	LMOD2_HUMAN	leiomodin 2 (cardiac)	37	Tropomyosin-binding (By similarity).|Potential.|Glu-rich.					cytoskeleton	actin binding|tropomyosin binding				0						AGAGAGAGAGTTGGAAGACAT	0.537													14	14					0	0	0.004007	0	0
FLNC	2318	broad.mit.edu	37	7	128478071	128478071	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:128478071C>T	uc003vnz.3	+	6	1209	c.1000C>T	c.(1000-1002)CGC>TGC	p.R334C	FLNC_uc003voa.3_Missense_Mutation_p.R334C	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	334	Filamin 1.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGACAAGGATCGCACCTATGC	0.537													24	38					0	0	0.005443	0	0
PLXNA4	91584	broad.mit.edu	37	7	131872265	131872265	+	Silent	SNP	C	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:131872265C>A	uc003vra.3	-	15	3187	c.2958G>T	c.(2956-2958)GTG>GTT	p.V986V		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	986	IPT/TIG 2.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CAAACATCACCACCACGTTGC	0.562													158	166					4.3967e-48	4.7299e-48	0.014410	1	0
ZC3HAV1	56829	broad.mit.edu	37	7	138738767	138738767	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:138738767G>A	uc003vun.2	-	11	2650	c.2262C>T	c.(2260-2262)TTC>TTT	p.F754F		NM_020119	NP_064504	Q7Z2W4	ZCCHV_HUMAN	zinc finger antiviral protein isoform 1	754	PARP catalytic.				response to virus	cytoplasm|nucleus	NAD+ ADP-ribosyltransferase activity|RNA binding|zinc ion binding			ovary(1)	1						TTTCAATCTTGAAATTTTTCA	0.338													15	19					0	0	0.002450	0	0
TBXAS1	6916	broad.mit.edu	37	7	139661886	139661886	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:139661886G>A	uc011kqv.1	+	10	1293	c.1129G>A	c.(1129-1131)GAG>AAG	p.E377K	TBXAS1_uc003vvh.2_Missense_Mutation_p.E331K|TBXAS1_uc010lne.2_Missense_Mutation_p.E263K|TBXAS1_uc011kqu.1_Missense_Mutation_p.E282K|TBXAS1_uc003vvi.2_Missense_Mutation_p.E331K|TBXAS1_uc003vvj.2_Missense_Mutation_p.E331K|TBXAS1_uc011kqw.1_Missense_Mutation_p.E311K	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	330	Lumenal (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					GACTGTGGATGAGATTGTGGG	0.542													12	19					0	0	0.013537	0	0
OR9A4	130075	broad.mit.edu	37	7	141619141	141619141	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:141619141C>T	uc003vwu.1	+	1	466	c.466C>T	c.(466-468)CAA>TAA	p.Q156*		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	156	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					GTTTCTTTTTCAAATCTGGCC	0.413													66	88					0	0	0.014410	0	0
MGAM	8972	broad.mit.edu	37	7	141755449	141755449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:141755449G>A	uc003vwy.2	+	28	3460	c.3406G>A	c.(3406-3408)GAA>AAA	p.E1136K		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1136	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TGGCTTTGGGGAAACTGAGCA	0.542													46	60					0	0	0.014410	0	0
TRPV6	55503	broad.mit.edu	37	7	142583159	142583159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:142583159C>T	uc003wbx.1	-	1	319	c.103G>A	c.(103-105)GAG>AAG	p.E35K		NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	35	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					AGGTTCTGCTCATCTCGGCTC	0.607													37	48					0	0	0.009718	0	0
KEL	3792	broad.mit.edu	37	7	142649704	142649704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:142649704C>T	uc003wcb.2	-	10	1305	c.1095G>A	c.(1093-1095)ATG>ATA	p.M365I		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	365	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					GCCCTAAGATCATGTGGCTCT	0.527													21	28					0	0	0.002780	0	0
CTAGE6	340307	broad.mit.edu	37	7	143453510	143453510	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:143453510C>T	uc003wdk.3	-	1	1334	c.1242G>A	c.(1240-1242)GAG>GAA	p.E414E	uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron	NM_178561	NP_848656	Q86UF2	CTGE6_HUMAN	CTAGE family, member 6	414	Potential.					integral to membrane					0	Melanoma(164;0.0903)					TAGAAAGCTTCTCTTCTTCCT	0.373													34	124					0	0	0.012213	0	0
OR2A25	392138	broad.mit.edu	37	7	143771930	143771930	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:143771930G>A	uc011ktx.1	+	1	618	c.618G>A	c.(616-618)CTG>CTA	p.L206L		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	206	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TGTCTGTGCTGGTGGGAGCCT	0.438													63	54					0	0	0.014410	0	0
OR2A7	401427	broad.mit.edu	37	7	143956032	143956032	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:143956032C>T	uc011kuc.1	-	1	690	c.690G>A	c.(688-690)AGG>AGA	p.R230R	OR2A9P_uc003wec.1_Intron|uc003wed.2_5'Flank	NM_001005328	NP_001005328	Q96R45	OR2A7_HUMAN	olfactory receptor, family 2, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.14)					TCTGAACTTCCCTTGATTGGA	0.478													43	76					0	0	0.014410	0	0
MLL3	58508	broad.mit.edu	37	7	151851222	151851222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr7:151851222G>A	uc003wla.2	-	48	12368	c.12149C>T	c.(12148-12150)TCA>TTA	p.S4050L	MLL3_uc003wkz.2_Missense_Mutation_p.S3168L|MLL3_uc003wkx.2_Missense_Mutation_p.S208L|MLL3_uc003wky.2_Missense_Mutation_p.S1614L	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	4050					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATTCCTTCTTGATTCTGAACC	0.348			N		medulloblastoma								14	18					0	0	0.002450	0	0
RP1L1	94137	broad.mit.edu	37	8	10469091	10469091	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:10469091C>T	uc003wtc.2	-	4	2746	c.2517G>A	c.(2515-2517)CGG>CGA	p.R839R		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	839					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GGGAGGGTCCCCGCTGGGCCT	0.716													11	11					0	0	0.010729	0	0
PDGFRL	5157	broad.mit.edu	37	8	17447138	17447138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:17447138G>A	uc003wxr.2	+	2	278	c.217G>A	c.(217-219)GAT>AAT	p.D73N		NM_006207	NP_006198	Q15198	PGFRL_HUMAN	platelet-derived growth factor receptor-like	73	Ig-like C2-type 1.					extracellular region	platelet activating factor receptor activity|platelet-derived growth factor beta-receptor activity				0				Colorectal(111;0.0752)		GCAAGTGCTGGATAAAGGTCG	0.507													29	40					0	0	0.008361	0	0
CHMP7	91782	broad.mit.edu	37	8	23106782	23106782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:23106782C>T	uc003xdc.2	+	3	1007	c.359C>T	c.(358-360)TCC>TTC	p.S120F	CHMP7_uc011kzs.1_Intron|CHMP7_uc003xdd.2_Missense_Mutation_p.S10F	NM_152272	NP_689485	Q8WUX9	CHMP7_HUMAN	CHMP family, member 7	120					cellular membrane organization|late endosome to vacuole transport	cytosol|ESCRT III complex	protein transporter activity				0		Prostate(55;0.0513)		Colorectal(74;0.0155)|COAD - Colon adenocarcinoma(73;0.0632)		AGCTGGATCTCCTGGGGGGTT	0.542													29	50					0	0	0.008361	0	0
NEFM	4741	broad.mit.edu	37	8	24776032	24776032	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:24776032G>A	uc003xed.3	+	3	2697	c.2664G>A	c.(2662-2664)GAG>GAA	p.E888E	NEFM_uc011lac.1_Silent_p.E670E|NEFM_uc010lue.2_Silent_p.E512E	NM_005382	NP_005373	P07197	NFM_HUMAN	neurofilament, medium polypeptide 150kDa isoform	888	Tail.					neurofilament	protein binding|structural constituent of cytoskeleton			breast(1)	1		Prostate(55;0.157)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0197)|Epithelial(17;2.44e-10)|Colorectal(74;0.0108)|COAD - Colon adenocarcinoma(73;0.0375)		AGCATGAAGAGACCTTTGAGG	0.418													59	83					0	0	0.014410	0	0
ZNF395	55893	broad.mit.edu	37	8	28218600	28218600	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:28218600G>A	uc003xgq.2	-	2	130	c.42C>T	c.(40-42)CTC>CTT	p.L14L	ZNF395_uc003xgt.2_Silent_p.L14L|ZNF395_uc003xgr.2_Silent_p.L14L|ZNF395_uc003xgs.2_Silent_p.L14L	NM_018660	NP_061130	Q9H8N7	ZN395_HUMAN	zinc finger protein 395	14					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding				0		Ovarian(32;2.06e-05)		KIRC - Kidney renal clear cell carcinoma(542;0.102)|Kidney(114;0.123)|Colorectal(74;0.142)		GGGCTCCCAGGAGGGACCGCT	0.687													32	39					0	0	0.013726	0	0
ADAM2	2515	broad.mit.edu	37	8	39626980	39626980	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:39626980G>A	uc003xnj.2	-	12	1218	c.1143C>T	c.(1141-1143)TTC>TTT	p.F381F	ADAM2_uc003xnk.2_Silent_p.F362F|ADAM2_uc011lck.1_Silent_p.F381F|ADAM2_uc003xnl.2_Silent_p.F255F	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	381	Extracellular (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CTTGCTGTTTGAAAAAAGGAT	0.443													16	26					0	0	0.006122	0	0
ADAM2	2515	broad.mit.edu	37	8	39645760	39645760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:39645760G>A	uc003xnj.2	-	9	728	c.653C>T	c.(652-654)TCA>TTA	p.S218L	ADAM2_uc003xnk.2_Missense_Mutation_p.S199L|ADAM2_uc011lck.1_Missense_Mutation_p.S218L|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	218	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		AATATTAAATGAAACAAAAAT	0.239													4	17					0	0	0.000602	0	0
FAM150A	389658	broad.mit.edu	37	8	53454993	53454993	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:53454993C>T	uc003xrd.2	-	2	408	c.203G>A	c.(202-204)AGA>AAA	p.R68K	FAM150A_uc011ldt.1_Missense_Mutation_p.R68K	NM_207413	NP_997296	Q6UXT8	F150A_HUMAN	hypothetical protein LOC389658 precursor	68						extracellular region					0		Lung NSC(129;0.0919)|all_epithelial(80;0.125)|all_lung(136;0.17)				GTTAGAGTCTCTTGGGAATAT	0.274													12	10					0	0	0.013537	0	0
RP1	6101	broad.mit.edu	37	8	55542301	55542301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:55542301G>A	uc003xsd.1	+	4	6007	c.5859G>A	c.(5857-5859)ATG>ATA	p.M1953I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1953					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			ATTTATGGATGAAAATACACC	0.333													13	13					0	0	0.001855	0	0
NKAIN3	286183	broad.mit.edu	37	8	63659634	63659634	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:63659634C>T	uc010lyq.1	+	4	549	c.417C>T	c.(415-417)ATC>ATT	p.I139I		NM_173688	NP_775959	Q8N8D7	NKAI3_HUMAN	Na+/K+ transporting ATPase interacting 3	139						integral to membrane|plasma membrane					0	Breast(64;0.127)	Lung NSC(129;0.187)				CAGGCTGCATCGTTGACTTCC	0.493													26	17					0	0	0.004656	0	0
CRH	1392	broad.mit.edu	37	8	67089270	67089270	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:67089270G>A	uc003xvy.1	-	2	628	c.443C>T	c.(442-444)CCG>CTG	p.P148L		NM_000756	NP_000747	P06850	CRF_HUMAN	corticotropin releasing hormone precursor	148					female pregnancy|negative regulation of circadian sleep/wake cycle, REM sleep|parturition|positive regulation of circadian sleep/wake cycle, wakefulness|positive regulation of cortisol secretion|signal transduction|synaptic transmission	extracellular region|soluble fraction	neuropeptide hormone activity				0		all_cancers(86;2.58e-06)|all_epithelial(80;6.27e-09)|all_lung(136;0.000414)|Lung NSC(129;0.0011)	Epithelial(68;0.0136)|all cancers(69;0.0507)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)		Corticotropin(DB01285)	TTCTCTCTCCGGTGCCTCCTG	0.677											OREG0018805	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	6					0	0	0.009096	0	0
CPA6	57094	broad.mit.edu	37	8	68658271	68658271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:68658271G>A	uc003xxq.3	-	1	350	c.94C>T	c.(94-96)CTT>TTT	p.L32F	CPA6_uc003xxr.3_5'UTR|CPA6_uc003xxs.2_Missense_Mutation_p.L32F	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	32					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			TTGTTATAAAGGTGGCTGTGC	0.532													19	21					0	0	0.012319	0	0
PREX2	80243	broad.mit.edu	37	8	69011978	69011978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:69011978C>T	uc003xxv.1	+	23	2642	c.2615C>T	c.(2614-2616)TCT>TTT	p.S872F	PREX2_uc003xxu.1_Missense_Mutation_p.S872F|PREX2_uc011lez.1_Missense_Mutation_p.S807F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	872					G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						AGCCTAAATTCTCTAAATGAA	0.318													32	32					0	0	0.012213	0	0
KCNB2	9312	broad.mit.edu	37	8	73848639	73848639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:73848639C>T	uc003xzb.2	+	3	1637	c.1049C>T	c.(1048-1050)TCC>TTC	p.S350F		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	350	Helical; Name=Segment S5; (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			ATGATATTTTCCAGCCTGGTA	0.473													58	45					0	0	0.014410	0	0
GDAP1	54332	broad.mit.edu	37	8	75263658	75263658	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:75263658G>A	uc003yah.2	+	2	346	c.267G>A	c.(265-267)GAG>GAA	p.E89E	GDAP1_uc011lfj.1_Intron|GDAP1_uc003yai.2_Silent_p.E21E	NM_018972	NP_061845	Q8TB36	GDAP1_HUMAN	ganglioside-induced differentiation-associated	89	GST N-terminal.					cytoplasm					0	Breast(64;0.00769)	Myeloproliferative disorder(644;0.0122)	BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.104)|all cancers(69;0.234)			TAATTTGTGAGGCCACTCAGA	0.413													60	65					0	0	0.014410	0	0
CNGB3	54714	broad.mit.edu	37	8	87738790	87738790	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:87738790C>T	uc003ydx.2	-	3	353	c.307G>A	c.(307-309)GAA>AAA	p.E103K		NM_019098	NP_061971	Q9NQW8	CNGB3_HUMAN	cyclic nucleotide gated channel beta 3	103	Cytoplasmic (Potential).				signal transduction|visual perception	integral to membrane	cGMP binding			ovary(2)|pancreas(1)	3						GGGTCCATTTCCTTCTGCTCT	0.438													109	140					0	0	0.014410	0	0
SLC26A7	115111	broad.mit.edu	37	8	92365223	92365223	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:92365223G>A	uc003yex.2	+	12	1591	c.1313G>A	c.(1312-1314)TGG>TAG	p.W438*	SLC26A7_uc003yey.2_RNA|SLC26A7_uc003yez.2_Nonsense_Mutation_p.W438*|SLC26A7_uc003yfa.2_Nonsense_Mutation_p.W438*	NM_052832	NP_439897	Q8TE54	S26A7_HUMAN	solute carrier family 26, member 7 isoform a	438	Extracellular (Potential).					basolateral plasma membrane|integral to membrane|recycling endosome membrane	anion:anion antiporter activity|bicarbonate transmembrane transporter activity|chloride channel activity|oxalate transmembrane transporter activity|sulfate transmembrane transporter activity			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(11;0.00802)			AAAATCGATTGGGTAAGTAGA	0.318													32	47					0	0	0.012213	0	0
TMEM67	91147	broad.mit.edu	37	8	94794663	94794663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:94794663C>T	uc011lgk.1	+	11	1177	c.1106C>T	c.(1105-1107)TCA>TTA	p.S369L	TMEM67_uc010mat.1_Missense_Mutation_p.S284L|TMEM67_uc010maw.2_Intron|TMEM67_uc003yga.3_Missense_Mutation_p.S288L	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	369					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			GCTGCTTATTCATTTGGAACA	0.303													24	23					0	0	0.005443	0	0
DPY19L4	286148	broad.mit.edu	37	8	95802053	95802053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:95802053C>T	uc003ygx.2	+	19	2211	c.2087C>T	c.(2086-2088)CCA>CTA	p.P696L		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	696						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					AACTATTCTCCATATGTGAAT	0.323													126	227					0	0	0.014410	0	0
FBXO43	286151	broad.mit.edu	37	8	101146506	101146506	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:101146506C>T	uc003yjd.2	-	4	2474	c.1761G>A	c.(1759-1761)AGG>AGA	p.R587R	FBXO43_uc003yje.2_Silent_p.R553R	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	587					meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			AACCAGGTATCCTAGCCTGTG	0.478													36	59					0	0	0.005524	0	0
TM7SF4	81501	broad.mit.edu	37	8	105367210	105367210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:105367210C>T	uc003ylx.1	+	3	1184	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S		NM_030788	NP_110415	Q9H295	TM7S4_HUMAN	dendritic cell-specific transmembrane protein	379	Helical; (Potential).				osteoclast differentiation	cell surface|integral to membrane|plasma membrane				pancreas(2)|large_intestine(1)|ovary(1)	4			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			GACCTGGGTTCCTCTCAGTGT	0.393													38	21					0	0	0.004289	0	0
ZFPM2	23414	broad.mit.edu	37	8	106646527	106646527	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:106646527G>A	uc003ymd.2	+	5	497	c.474G>A	c.(472-474)CTG>CTA	p.L158L		NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	158					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding			ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			AGTGGTTGCTGGATGTGACTT	0.428													9	13					0	0	0.008291	0	0
ABRA	137735	broad.mit.edu	37	8	107782255	107782255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:107782255C>T	uc003ymm.3	-	1	218	c.164G>A	c.(163-165)GGG>GAG	p.G55E		NM_139166	NP_631905	Q8N0Z2	ABRA_HUMAN	actin-binding Rho activating protein	55					positive regulation of Rho protein signal transduction|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent|transmembrane transport	actin cytoskeleton|plasma membrane|sarcomere	actin binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(57;3.83e-09)			GTCCTGGGTCCCTCCCGGCAG	0.617													42	42					0	0	0.009718	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110478974	110478974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:110478974G>A	uc003yne.2	+	50	8685	c.8581G>A	c.(8581-8583)GAT>AAT	p.D2861N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2861	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GCTTGAAAAGGATGTGGTTCT	0.388										HNSCC(38;0.096)			9	5					0	0	0.013537	0	0
CSMD3	114788	broad.mit.edu	37	8	113246620	113246620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:113246620C>T	uc003ynu.2	-	68	10873	c.10714G>A	c.(10714-10716)GAA>AAA	p.E3572K	CSMD3_uc003yns.2_Missense_Mutation_p.E2774K|CSMD3_uc003ynt.2_Missense_Mutation_p.E3532K|CSMD3_uc011lhx.1_Missense_Mutation_p.E3403K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	3572	Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CAATTTTCTTCCTTCATTTTC	0.358										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			33	61					0	0	0.004878	0	0
CSMD3	114788	broad.mit.edu	37	8	113303898	113303898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:113303898G>A	uc003ynu.2	-	56	8974	c.8815C>T	c.(8815-8817)CCA>TCA	p.P2939S	CSMD3_uc003yns.2_Missense_Mutation_p.P2141S|CSMD3_uc003ynt.2_Missense_Mutation_p.P2899S|CSMD3_uc011lhx.1_Missense_Mutation_p.P2770S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2939	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						GAATTGGCTGGAATTCCAGGA	0.294										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			25	40					0	0	0.006320	0	0
COLEC10	10584	broad.mit.edu	37	8	120103388	120103388	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:120103388G>A	uc003yoo.2	+	3	318	c.221G>A	c.(220-222)GGA>GAA	p.G74E		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	74	Collagen-like.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			TGCTTTTCAGGAATTAAAGGA	0.373													14	20					0	0	0.004007	0	0
ZHX1	11244	broad.mit.edu	37	8	124266466	124266466	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:124266466T>C	uc003yqe.2	-	3	2151	c.1721A>G	c.(1720-1722)GAG>GGG	p.E574G	C8orf76_uc003yqd.2_Intron|ZHX1_uc003yqf.2_Missense_Mutation_p.E574G|ZHX1_uc003yqg.2_Intron|ZHX1_uc010mdi.2_Missense_Mutation_p.E574G	NM_007222	NP_009153	Q9UKY1	ZHX1_HUMAN	zinc fingers and homeoboxes 1	574	Homeobox 3.				negative regulation of transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	Lung NSC(37;1.25e-09)|Ovarian(258;0.0154)		STAD - Stomach adenocarcinoma(47;0.00527)			TGCAGTTTTCTCTTTAAACTT	0.433													32	39					0	0	0.012213	0	0
ADCY8	114	broad.mit.edu	37	8	131859670	131859670	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:131859670C>T	uc003ytd.3	-	11	2758	c.2502G>A	c.(2500-2502)GAG>GAA	p.E834E	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	834	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AAATAAATACCTCTGGGTAGG	0.423										HNSCC(32;0.087)			13	30					0	0	0.001855	0	0
ADCY8	114	broad.mit.edu	37	8	131916126	131916126	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:131916126G>A	uc003ytd.3	-	7	2059	c.1803C>T	c.(1801-1803)ATC>ATT	p.I601I	ADCY8_uc010mds.2_Silent_p.I601I	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	601	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			ACTCCTTGACGATATCTTCAG	0.483										HNSCC(32;0.087)			30	46					0	0	0.009535	0	0
TG	7038	broad.mit.edu	37	8	133899155	133899155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:133899155G>A	uc003ytw.2	+	9	1579	c.1538G>A	c.(1537-1539)GGG>GAG	p.G513E		NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	513					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		TTGAATGGAGGGAGACAAGAA	0.448													24	36					0	0	0.002780	0	0
NDRG1	10397	broad.mit.edu	37	8	134251180	134251180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:134251180G>A	uc003yuh.2	-	16	1712	c.1126C>T	c.(1126-1128)CCC>TCC	p.P376S	NDRG1_uc003yue.1_Missense_Mutation_p.P91S|NDRG1_uc003yuf.1_Missense_Mutation_p.P187S|NDRG1_uc003yug.2_Missense_Mutation_p.P376S|NDRG1_uc010mee.2_Missense_Mutation_p.P295S|NDRG1_uc010mef.2_Missense_Mutation_p.P310S|NDRG1_uc011ljh.1_Missense_Mutation_p.P204S|NDRG1_uc011lji.1_Missense_Mutation_p.P123S|NDRG1_uc003yui.1_Intron	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	376					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			CCCGAGTTGGGGGTGATGTCC	0.711													4	5					0	0	0.009096	0	0
NDRG1	10397	broad.mit.edu	37	8	134256628	134256628	+	Silent	SNP	C	T	T	rs150101908	by1000genomes	TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:134256628C>T	uc003yuh.2	-	14	1447	c.861G>A	c.(859-861)GCG>GCA	p.A287A	NDRG1_uc003yue.1_Silent_p.A2A|NDRG1_uc003yuf.1_Silent_p.A98A|NDRG1_uc003yug.2_Silent_p.A287A|NDRG1_uc010mee.2_Silent_p.A206A|NDRG1_uc010mef.2_Silent_p.A221A|NDRG1_uc011ljh.1_Silent_p.A115A|NDRG1_uc011lji.1_Silent_p.A34A|NDRG1_uc003yui.1_5'Flank	NM_001135242	NP_001128714	Q92597	NDRG1_HUMAN	N-myc downstream regulated 1	287					cellular response to hypoxia|response to metal ion	cytoplasm|microtubule cytoskeleton|nucleus|plasma membrane	protein binding			ovary(4)	4	all_epithelial(106;4.26e-24)|Lung NSC(106;7.26e-07)|all_lung(105;2.77e-06)|Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0107)			CGCCACAGTCCGCCATCTAGG	0.567													16	20					0	0	0.004990	0	0
ZC3H3	23144	broad.mit.edu	37	8	144620785	144620785	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:144620785G>A	uc003yyd.2	-	2	781	c.752C>T	c.(751-753)TCC>TTC	p.S251F		NM_015117	NP_055932	Q8IXZ2	ZC3H3_HUMAN	zinc finger CCCH-type containing 3	251					mRNA polyadenylation|poly(A)+ mRNA export from nucleus|regulation of mRNA export from nucleus	nucleus	nucleic acid binding|zinc ion binding			skin(1)	1	all_cancers(97;8.64e-11)|all_epithelial(106;6.43e-09)|Lung NSC(106;0.000202)|all_lung(105;0.000548)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.107)			GCTGGCCACGGAATGAGAACC	0.642													20	38					0	0	0.007413	0	0
ZNF251	90987	broad.mit.edu	37	8	145947332	145947332	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr8:145947332A>T	uc003zdv.3	-	5	1969	c.1713T>A	c.(1711-1713)TAT>TAA	p.Y571*		NM_138367	NP_612376	Q9BRH9	ZN251_HUMAN	zinc finger protein 251	571	C2H2-type 12; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(97;3.54e-11)|all_epithelial(106;2.65e-10)|Lung NSC(106;4.08e-05)|all_lung(105;0.000125)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.75e-39)|Epithelial(56;7.54e-38)|all cancers(56;6.19e-33)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.11)	GBM - Glioblastoma multiforme(99;0.198)		AAGCTTTTCCATATTCATTAC	0.468													33	39					0	0	0.012213	0	0
DMRT3	58524	broad.mit.edu	37	9	990863	990863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:990863C>T	uc003zgw.1	+	2	1315	c.1277C>T	c.(1276-1278)CCT>CTT	p.P426L		NM_021240	NP_067063	Q9NQL9	DMRT3_HUMAN	doublesex and mab-3 related transcription factor	426					cell differentiation|multicellular organismal development|sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity			ovary(2)|central_nervous_system(1)	3		all_lung(10;1.39e-08)|Lung NSC(10;1.42e-08)		Lung(218;0.0196)		CCCGTCCTTCCTGCCCGCGCC	0.552													27	8					0	0	0.003954	0	0
PTPRD	5789	broad.mit.edu	37	9	8317926	8317926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:8317926G>A	uc003zkk.2	-	45	6398	c.5687C>T	c.(5686-5688)TCC>TTC	p.S1896F	PTPRD_uc003zkp.2_Missense_Mutation_p.S1490F|PTPRD_uc003zkq.2_Missense_Mutation_p.S1489F|PTPRD_uc003zkr.2_Missense_Mutation_p.S1480F|PTPRD_uc003zks.2_Missense_Mutation_p.S1489F|PTPRD_uc003zkl.2_Missense_Mutation_p.S1887F|PTPRD_uc003zkm.2_Missense_Mutation_p.S1883F|PTPRD_uc003zkn.2_Missense_Mutation_p.S1485F|PTPRD_uc003zko.2_Missense_Mutation_p.S1486F	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1896	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		GGCACGATAGGAAAACTGATA	0.408										TSP Lung(15;0.13)			62	12					0	0	0.014410	0	0
KIAA1797	54914	broad.mit.edu	37	9	20874701	20874701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:20874701C>T	uc003zog.1	+	21	2575	c.2212C>T	c.(2212-2214)CCT>TCT	p.P738S	KIAA1797_uc003zoh.1_Missense_Mutation_p.P174S	NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	738						integral to membrane	binding	p.P738A(1)		ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		AATTCCCATTCCTGAAGAGTT	0.368													45	11					0	0	0.010771	0	0
PGM5	5239	broad.mit.edu	37	9	71006611	71006611	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:71006611G>T	uc004agr.2	+	5	1088	c.859G>T	c.(859-861)GGA>TGA	p.G287*		NM_021965	NP_068800	Q15124	PGM5_HUMAN	phosphoglucomutase 5	287					cell adhesion|cellular calcium ion homeostasis|glucose metabolic process	costamere|dystrophin-associated glycoprotein complex|focal adhesion|intercalated disc|internal side of plasma membrane|sarcolemma|spot adherens junction|stress fiber|Z disc	intramolecular transferase activity, phosphotransferases|magnesium ion binding|structural molecule activity			ovary(1)|pancreas(1)	2						AGGAGAATATGGATTTGGAGC	0.463													25	46					1.75199e-13	1.85223e-13	0.007291	1	0
PRKACG	5568	broad.mit.edu	37	9	71628256	71628256	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:71628256G>A	uc004agy.2	-	1	784	c.753C>T	c.(751-753)ATC>ATT	p.I251I		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	251	Protein kinase.		I -> N.		activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						TCCCAGAGACGATCTTCTCGT	0.612													36	35					0	0	0.005524	0	0
APBA1	320	broad.mit.edu	37	9	72046311	72046311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:72046311G>A	uc004ahh.2	-	13	2722	c.2446C>T	c.(2446-2448)CAT>TAT	p.H816Y		NM_001163	NP_001154	Q02410	APBA1_HUMAN	amyloid beta A4 precursor protein-binding,	816	PDZ 2.				axon cargo transport|cell adhesion|intracellular protein transport|nervous system development|protein complex assembly|synaptic transmission	synaptic vesicle				lung(1)	1						GTCTTCATATGAATCTGAGGG	0.622													36	46					0	0	0.003755	0	0
MAMDC2	256691	broad.mit.edu	37	9	72785459	72785459	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:72785459G>A	uc004ahm.2	+	11	2180	c.1563G>A	c.(1561-1563)GAG>GAA	p.E521E	MAMDC2_uc004ahn.2_RNA|uc004aho.1_Intron|uc004ahp.1_RNA	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	521	MAM 4.					endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						TTACTCAGGAGAAAAGAAACC	0.488													24	39					0	0	0.005443	0	0
TRPM6	140803	broad.mit.edu	37	9	77370359	77370359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:77370359C>T	uc004ajl.1	-	28	5054	c.4816G>A	c.(4816-4818)GAC>AAC	p.D1606N	TRPM6_uc004ajk.1_Missense_Mutation_p.D1601N|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.D557N|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.D562N	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1606	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTCAACTGGTCACTCTGAGAG	0.428													24	35					0	0	0.002780	0	0
TRPM6	140803	broad.mit.edu	37	9	77377697	77377697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:77377697C>T	uc004ajl.1	-	26	4128	c.3890G>A	c.(3889-3891)AGG>AAG	p.R1297K	TRPM6_uc004ajk.1_Missense_Mutation_p.R1292K|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.R253K	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1297	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						AAGTGCCCCCCTCTGCACTCT	0.478													70	89					0	0	0.014410	0	0
NTRK2	4915	broad.mit.edu	37	9	87636271	87636271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:87636271G>A	uc004aoa.1	+	20	3326	c.2388G>A	c.(2386-2388)ATG>ATA	p.M796I	NTRK2_uc004anz.1_Missense_Mutation_p.M812I	NM_001018064	NP_001018074	Q16620	NTRK2_HUMAN	neurotrophic tyrosine kinase, receptor, type 2	796	Protein kinase.|Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development	integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein tyrosine kinase activity			lung(11)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|liver(1)	16						AGCCCCACATGAGGAAGAACA	0.597										TSP Lung(25;0.17)			26	43					0	0	0.006320	0	0
GOLM1	51280	broad.mit.edu	37	9	88661463	88661463	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:88661463T>A	uc004aol.2	-	5	587	c.389A>T	c.(388-390)AAT>ATT	p.N130I	GOLM1_uc010mqd.1_RNA|GOLM1_uc004aom.2_Missense_Mutation_p.N130I	NM_016548	NP_057632	Q8NBJ4	GOLM1_HUMAN	golgi membrane protein 1	130	Potential.|Lumenal (Potential).					Golgi apparatus|integral to plasma membrane					0						CCTGCCGTAATTCCTCTGCAG	0.532													7	9					0	0	0.008291	0	0
SYK	6850	broad.mit.edu	37	9	93606333	93606333	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:93606333C>T	uc004aqz.2	+	2	358	c.153C>T	c.(151-153)TTC>TTT	p.F51F	SYK_uc004aqy.2_Silent_p.F51F|SYK_uc004ara.2_Silent_p.F51F|SYK_uc004arb.2_Silent_p.F51F|SYK_uc004arc.2_Silent_p.F51F|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	51	SH2 1.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TGGGTGGCTTCGCCCTGTCCG	0.637			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								13	10					0	0	0.001855	0	0
WNK2	65268	broad.mit.edu	37	9	96080313	96080313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:96080313C>T	uc011lud.1	+	29	6632	c.6632C>T	c.(6631-6633)TCC>TTC	p.S2211F	WNK2_uc004atj.2_Intron|WNK2_uc004atk.2_3'UTR	NM_006648	NP_006639	Q9Y3S1	WNK2_HUMAN	WNK lysine deficient protein kinase 2	Error:Variant_position_missing_in_Q9Y3S1_after_alignment					intracellular protein kinase cascade		ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|stomach(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)|breast(1)	12						CTCCTAGGTTCCTGTGGTCCA	0.597													37	41					0	0	0.014410	0	0
ZNF782	158431	broad.mit.edu	37	9	99581721	99581721	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:99581721G>A	uc004awp.1	-	6	865	c.584C>T	c.(583-585)ACC>ATC	p.T195I	ZNF782_uc011lup.1_Missense_Mutation_p.T63I	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	195					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				ATGATGGAGGGTTTTCACAAT	0.363													22	20					0	0	0.014323	0	0
ZNF782	158431	broad.mit.edu	37	9	99581952	99581952	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:99581952G>A	uc004awp.1	-	6	634	c.353C>T	c.(352-354)TCA>TTA	p.S118L	ZNF782_uc011lup.1_5'UTR	NM_001001662	NP_001001662	Q6ZMW2	ZN782_HUMAN	zinc finger protein 782	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Acute lymphoblastic leukemia(62;0.0527)				TGGTTTTCCTGAAATTTCTTG	0.403													16	28					0	0	0.004007	0	0
FAM22G	441457	broad.mit.edu	37	9	99700235	99700235	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:99700235G>A	uc004awq.1	+	6	2107	c.1392G>A	c.(1390-1392)TTG>TTA	p.L464L	HIATL2_uc004awr.1_Intron	NM_001045477	NP_001038942	Q5VZR2	FA22G_HUMAN	hypothetical protein LOC441457	464										skin(1)	1		Acute lymphoblastic leukemia(62;0.0527)				TGGATTTCTTGGCCCTAAGCC	0.582													52	83					0	0	0.014410	0	0
BAAT	570	broad.mit.edu	37	9	104125007	104125007	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:104125007G>A	uc010mtd.2	-	4	1069	c.960C>T	c.(958-960)TTC>TTT	p.F320F	BAAT_uc004bbd.3_Silent_p.F320F	NM_001127610	NP_001121082	Q14032	BAAT_HUMAN	bile acid Coenzyme A: amino acid	320					acyl-CoA metabolic process|bile acid and bile salt transport|bile acid biosynthetic process|digestion|fatty acid metabolic process|glycine metabolic process	cytosol|peroxisomal matrix	carboxylesterase activity|glycine N-choloyltransferase activity|N-acyltransferase activity|palmitoyl-CoA hydrolase activity			ovary(1)|lung(1)|skin(1)	3		Acute lymphoblastic leukemia(62;0.0559)			Glycine(DB00145)	CAATGAAGAGGAATTGCCCCT	0.473													41	47					0	0	0.010771	0	0
OR13C8	138802	broad.mit.edu	37	9	107332076	107332076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:107332076C>T	uc011lvo.1	+	1	628	c.628C>T	c.(628-630)CCA>TCA	p.P210S		NM_001004483	NP_001004483	Q8NGS7	O13C8_HUMAN	olfactory receptor, family 13, subfamily C,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TCTGGTTATTCCATTGTTAGT	0.388													27	58					0	0	0.005443	0	0
OR13C2	392376	broad.mit.edu	37	9	107367090	107367090	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:107367090C>T	uc011lvq.1	-	1	819	c.819G>A	c.(817-819)TTG>TTA	p.L273L		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	273	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CGGTAGCATCCAAGTCATCCG	0.418													38	59					0	0	0.008740	0	0
OR13C2	392376	broad.mit.edu	37	9	107367354	107367354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:107367354C>T	uc011lvq.1	-	1	555	c.555G>A	c.(553-555)ATG>ATA	p.M185I		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGGCCAGTTTCATGACAGCCA	0.398													53	38					0	0	0.014410	0	0
OR13D1	286365	broad.mit.edu	37	9	107457324	107457324	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:107457324C>T	uc011lvs.1	+	1	622	c.622C>T	c.(622-624)CAT>TAT	p.H208Y		NM_001004484	NP_001004484	Q8NGV5	O13D1_HUMAN	olfactory receptor, family 13, subfamily D,	208	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TGTCATTGATCATATTACCTG	0.398													31	47					0	0	0.003271	0	0
PTPN3	5774	broad.mit.edu	37	9	112145746	112145746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:112145746G>A	uc004bed.2	-	23	2451	c.2339C>T	c.(2338-2340)ACC>ATC	p.T780I	PTPN3_uc004beb.2_Missense_Mutation_p.T649I|PTPN3_uc004bec.2_Missense_Mutation_p.T604I|PTPN3_uc010mtu.2_RNA|PTPN3_uc011lwg.1_Missense_Mutation_p.T735I|PTPN3_uc011lwh.1_Missense_Mutation_p.T626I|PTPN3_uc011lwd.1_Missense_Mutation_p.T248I|PTPN3_uc011lwe.1_Missense_Mutation_p.T493I|PTPN3_uc011lwf.1_Missense_Mutation_p.T448I	NM_002829	NP_002820	P26045	PTN3_HUMAN	protein tyrosine phosphatase, non-receptor type	780	Tyrosine-protein phosphatase.				negative regulation of membrane protein ectodomain proteolysis|negative regulation of mitotic cell cycle	cytoplasm|cytoskeleton|internal side of plasma membrane	ATPase binding|cytoskeletal protein binding|phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(3)	3						ATAGGCGATGGTGCAGTCCTC	0.592													50	72					0	0	0.014410	0	0
SVEP1	79987	broad.mit.edu	37	9	113192700	113192700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:113192700G>A	uc010mtz.2	-	33	5721	c.5384C>T	c.(5383-5385)CCG>CTG	p.P1795L	SVEP1_uc010mty.2_5'Flank	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1795	Sushi 7.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GCCATTTTCCGGATTTCCTGG	0.423													7	17					0	0	0.001984	0	0
COL27A1	85301	broad.mit.edu	37	9	117072929	117072929	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:117072929C>T	uc011lxl.1	+	61	5537	c.5537C>T	c.(5536-5538)TCA>TTA	p.S1846L	COL27A1_uc004bii.2_RNA|COL27A1_uc011lxn.1_Missense_Mutation_p.S161L	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	1846	Fibrillar collagen NC1.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CCTGCCTCATCAGGGAAGCAG	0.602													35	42					0	0	0.003755	0	0
TNC	3371	broad.mit.edu	37	9	117798450	117798450	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:117798450C>T	uc004bjj.3	-	21	5945	c.5583G>A	c.(5581-5583)ACG>ACA	p.T1861T	TNC_uc010mvf.2_Silent_p.T1588T	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	1861	Fibronectin type-III 14.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						GTGTGTATTCCGTGGCAGGCT	0.502													39	64					0	0	0.006230	0	0
PAPPA	5069	broad.mit.edu	37	9	118949457	118949457	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:118949457T>A	uc004bjn.2	+	2	821	c.440T>A	c.(439-441)ATC>AAC	p.I147N	PAPPA_uc011lxp.1_5'UTR|PAPPA_uc011lxq.1_5'UTR	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	147					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGTTCTTATATCTCACGTGAC	0.453													34	31					0	0	0.006230	0	0
PAPPA	5069	broad.mit.edu	37	9	119158854	119158854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:119158854G>A	uc004bjn.2	+	22	5224	c.4843G>A	c.(4843-4845)GAA>AAA	p.E1615K	PAPPA_uc011lxq.1_Missense_Mutation_p.E990K	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1615					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCAGGCCCAAGAACACAGCCG	0.517													39	75					0	0	0.005524	0	0
ASTN2	23245	broad.mit.edu	37	9	119625870	119625870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:119625870C>T	uc004bjs.1	-	11	2133	c.2032G>A	c.(2032-2034)GGA>AGA	p.G678R	ASTN2_uc004bjr.1_Missense_Mutation_p.G674R|ASTN2_uc004bjt.1_Missense_Mutation_p.G627R	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	678	Extracellular (Potential).|EGF-like 2.					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						ACCACACATCCCGAGGAATCC	0.612													11	34					0	0	0.003163	0	0
TLR4	7099	broad.mit.edu	37	9	120475290	120475290	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:120475290A>G	uc004bjz.2	+	3	1175	c.884A>G	c.(883-885)TAC>TGC	p.Y295C	TLR4_uc004bka.2_Missense_Mutation_p.Y255C|TLR4_uc004bkb.2_Missense_Mutation_p.Y95C	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	295	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						TACTTAGACTACTACCTCGAT	0.338													36	36					0	0	0.005524	0	0
DBC1	1620	broad.mit.edu	37	9	121929941	121929941	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:121929941C>T	uc004bkc.2	-	8	2163	c.1707G>A	c.(1705-1707)GGG>GGA	p.G569G		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	569					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						CCGAATGGCTCCCGCTAAAGG	0.547													22	31					0	0	0.012319	0	0
OR1K1	392392	broad.mit.edu	37	9	125563054	125563054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:125563054C>T	uc011lze.1	+	1	653	c.653C>T	c.(652-654)TCC>TTC	p.S218F		NM_080859	NP_543135	Q8NGR3	OR1K1_HUMAN	olfactory receptor, family 1, subfamily K,	218	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ATCCTCGCCTCCTATGGGGCC	0.652													29	25					0	0	0.006320	0	0
LRSAM1	90678	broad.mit.edu	37	9	130236188	130236188	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:130236188C>T	uc004brb.1	+	11	1073	c.728C>T	c.(727-729)TCA>TTA	p.S243L	LRSAM1_uc010mxk.1_Missense_Mutation_p.S243L|LRSAM1_uc004brc.1_Missense_Mutation_p.S243L|LRSAM1_uc004brd.1_Missense_Mutation_p.S243L	NM_001005373	NP_001005373	Q6UWE0	LRSM1_HUMAN	leucine rich repeat and sterile alpha motif	243					negative regulation of endocytosis|non-lytic virus budding|protein autoubiquitination|protein catabolic process|protein polyubiquitination|protein transport|ubiquitin-dependent endocytosis	cytoplasm|extracellular region|membrane part	hormone activity|ubiquitin-protein ligase activity|zinc ion binding				0						GACAGATTCTCAAGGGAGGAG	0.463													38	34					0	0	0.014410	0	0
CIZ1	25792	broad.mit.edu	37	9	130931699	130931699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:130931699C>T	uc004btt.2	-	13	2294	c.2131G>A	c.(2131-2133)GAC>AAC	p.D711N	CIZ1_uc004btr.2_Missense_Mutation_p.D683N|CIZ1_uc004bts.2_Missense_Mutation_p.D682N|CIZ1_uc011maq.1_Missense_Mutation_p.D650N|CIZ1_uc004btu.2_Missense_Mutation_p.D631N|CIZ1_uc011mar.1_Missense_Mutation_p.D610N|CIZ1_uc011mas.1_Missense_Mutation_p.D767N|CIZ1_uc004btw.2_Missense_Mutation_p.D655N|CIZ1_uc004btv.2_Missense_Mutation_p.D711N	NM_001131016	NP_001124488	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1 isoform	711						nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4						TTGGCTTTGTCCTTATGCCCC	0.388													19	22					0	0	0.012319	0	0
PKN3	29941	broad.mit.edu	37	9	131475654	131475654	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:131475654C>T	uc004bvw.2	+	8	1473	c.1080C>T	c.(1078-1080)ATC>ATT	p.I360I	PKN3_uc010myh.2_Silent_p.I360I|PKN3_uc011mbk.1_5'UTR	NM_013355	NP_037487	Q6P5Z2	PKN3_HUMAN	protein kinase PKNbeta	360					signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm	ATP binding|protein binding|protein kinase C activity			stomach(2)|lung(2)	4						CCTTTGTCATCCCACTGGAGC	0.652													42	73					0	0	0.008740	0	0
RALGDS	5900	broad.mit.edu	37	9	135983586	135983586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:135983586G>A	uc004cco.2	-	6	1006	c.986C>T	c.(985-987)CCA>CTA	p.P329L	RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Missense_Mutation_p.P317L|RALGDS_uc004ccr.2_Missense_Mutation_p.P328L|RALGDS_uc011mcv.1_Missense_Mutation_p.P300L|RALGDS_uc004ccs.2_Missense_Mutation_p.P274L|RALGDS_uc011mcw.1_Missense_Mutation_p.P400L|RALGDS_uc004ccv.1_Missense_Mutation_p.P98L|RALGDS_uc004ccu.1_Missense_Mutation_p.P98L	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	329					nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		AGCTGGCGCTGGAGCCGATTC	0.393			T	CIITA	PMBL|Hodgkin Lymphona|								24	29					0	0	0.014323	0	0
COL5A1	1289	broad.mit.edu	37	9	137702118	137702118	+	Silent	SNP	G	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:137702118G>T	uc004cfe.2	+	44	3874	c.3492G>T	c.(3490-3492)CCG>CCT	p.P1164P		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1164	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCGGGGAGCCGGGGCAGAAAG	0.592													47	55					5.57489e-27	5.9753e-27	0.014410	1	0
INPP5E	56623	broad.mit.edu	37	9	139324151	139324151	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:139324151G>A	uc004cho.2	-	10	2296	c.1911C>T	c.(1909-1911)TCC>TCT	p.S637S	INPP5E_uc010nbm.2_Silent_p.S636S	NM_019892	NP_063945	Q9NRR6	INP5E_HUMAN	inositol polyphosphate-5-phosphatase E	637						cilium axoneme|cytoskeleton|Golgi cisterna membrane	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity			skin(1)	1		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;8.36e-06)|Epithelial(140;1.4e-05)		AGATGGTGCTGGAGTTCTGAC	0.463													99	126					0	0	0.014410	0	0
C9orf86	55684	broad.mit.edu	37	9	139722973	139722973	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr9:139722973T>G	uc004cji.1	+	4	609	c.341T>G	c.(340-342)TTA>TGA	p.L114*	C9orf86_uc004cjm.2_Nonsense_Mutation_p.L114*|C9orf86_uc004cjh.2_Nonsense_Mutation_p.L114*|C9orf86_uc004cjj.1_Nonsense_Mutation_p.L114*|C9orf86_uc004cjk.1_RNA|C9orf86_uc010nbr.1_Nonsense_Mutation_p.L114*|C9orf86_uc004cjl.1_RNA|C9orf86_uc010nbs.1_5'UTR|hsa-mir-4292|MI0015897_5'Flank	NM_024718	NP_078994	Q3YEC7	PARF_HUMAN	Rab-like GTP-binding protein 1 isoform 1	114	Small GTPase-like.				small GTPase mediated signal transduction	cytoplasm|nucleus	GTP binding|protein binding				0	all_cancers(76;0.0763)|all_epithelial(76;0.198)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.61e-05)|Epithelial(140;0.000183)		GGCGACGGCTTAAAGATGGAG	0.572													19	24					0	0	0.012319	0	0
NLGN4X	57502	broad.mit.edu	37	X	5811130	5811130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:5811130C>T	uc010ndh.2	-	6	2680	c.2179G>A	c.(2179-2181)GAA>AAA	p.E727K	NLGN4X_uc004crp.2_Missense_Mutation_p.E747K|NLGN4X_uc004crq.2_Missense_Mutation_p.E727K|NLGN4X_uc010ndi.2_Missense_Mutation_p.E764K|NLGN4X_uc004crr.2_Missense_Mutation_p.E727K|NLGN4X_uc010ndj.2_Missense_Mutation_p.E727K	NM_181332	NP_851849	Q8N0W4	NLGNX_HUMAN	X-linked neuroligin 4 precursor	727	Cytoplasmic (Potential).				brainstem development|cell adhesion|cell-cell junction organization|cerebellum development|male courtship behavior|positive regulation of organ growth|regulation of excitatory postsynaptic membrane potential|social behavior|synapse assembly|territorial aggressive behavior|vocalization behavior	cell surface|dendrite|integral to plasma membrane|synapse	chloride ion binding|neurexin binding|protein homodimerization activity|receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						ATGATCTCTTCGTTCTGGATG	0.552													25	0					0	0	0.003330	0	0
FAM9B	171483	broad.mit.edu	37	X	9000489	9000489	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:9000489G>A	uc011mhu.1	-	2	131	c.42C>T	c.(40-42)GTC>GTT	p.V14V	FAM9B_uc011mhv.1_RNA|FAM9B_uc004csh.2_Silent_p.V59V	NM_205849	NP_995321	Q8IZU0	FAM9B_HUMAN	family with sequence similarity 9, member B	14						nucleus					0		Hepatocellular(5;0.219)				ATTCATCACGGACTGGATCCT	0.393													53	3					0	0	0.014410	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627525	21627525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:21627525G>A	uc004czx.1	+	20	2518	c.2482G>A	c.(2482-2484)GAG>AAG	p.E828K	CNKSR2_uc004czw.2_Missense_Mutation_p.E828K|CNKSR2_uc011mjn.1_Missense_Mutation_p.E779K|CNKSR2_uc011mjo.1_Missense_Mutation_p.E798K|CNKSR2_uc004czy.2_Missense_Mutation_p.E420K	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	828					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						CCCCTTAGCTGAGAGTGAGAG	0.552													38	2					0	0	0.008740	0	0
DDX53	168400	broad.mit.edu	37	X	23018312	23018312	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:23018312C>T	uc004daj.2	+	1	226	c.138C>T	c.(136-138)TCC>TCT	p.S46S		NM_182699	NP_874358	Q86TM3	DDX53_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 53	46						nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			large_intestine(1)|ovary(1)|kidney(1)	3						CAGCAGGCTCCCGTGAACCAC	0.507													21	4					0	0	0.012319	0	0
MAGEB2	4113	broad.mit.edu	37	X	30237372	30237372	+	Silent	SNP	A	G	G			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:30237372A>G	uc004dbz.2	+	2	778	c.675A>G	c.(673-675)GAA>GAG	p.E225E		NM_002364	NP_002355	O15479	MAGB2_HUMAN	melanoma antigen family B, 2	225	MAGE.						protein binding			ovary(1)	1						AGATCTGGGAATTCCTGAATA	0.483													4	26					0	0	0.009096	0	0
FAM47B	170062	broad.mit.edu	37	X	34961495	34961495	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:34961495C>T	uc004ddi.1	+	1	565	c.547C>T	c.(547-549)CCC>TCC	p.P183S		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	183										ovary(3)|breast(1)	4						TGGTAAATATCCCTGTGGGGA	0.642													15	5					0	0	0.004007	0	0
MAOB	4129	broad.mit.edu	37	X	43637955	43637955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:43637955C>T	uc004dfz.3	-	11	1287	c.1111G>A	c.(1111-1113)GTT>ATT	p.V371I	MAOB_uc011mkx.1_Missense_Mutation_p.V355I|MAOB_uc011mky.1_Missense_Mutation_p.V355I	NM_000898	NP_000889	P27338	AOFB_HUMAN	monoamine oxidase B	371	Cytoplasmic.				xenobiotic metabolic process	integral to membrane|mitochondrial outer membrane	electron carrier activity|primary amine oxidase activity			ovary(1)|central_nervous_system(1)	2					Amantadine(DB00915)|Bupropion(DB01156)|Carbidopa(DB00190)|Citalopram(DB00215)|Dopamine(DB00988)|Entacapone(DB00494)|Furazolidone(DB00614)|Ginkgo biloba(DB01381)|Ibuprofen(DB01050)|Imipramine(DB00458)|Iproniazid(DB04818)|Isocarboxazid(DB01247)|Levodopa(DB01235)|Maprotiline(DB00934)|Meclizine(DB00737)|Moclobemide(DB01171)|Nicotine(DB00184)|Pargyline(DB01626)|Phenelzine(DB00780)|Phentermine(DB00191)|Rasagiline(DB01367)|Selegiline(DB01037)|Tranylcypromine(DB00752)	GAACCCAGAACCTTGGCATAG	0.448													14	0					0	0	0.004990	0	0
BMP15	9210	broad.mit.edu	37	X	50659043	50659043	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:50659043C>T	uc011mnw.1	+	2	615	c.615C>T	c.(613-615)CTC>CTT	p.L205L		NM_005448	NP_005439	O95972	BMP15_HUMAN	bone morphogenetic protein 15 precursor	205					female gamete generation|granulosa cell development|ovarian follicle development	extracellular space	cytokine activity|growth factor activity			ovary(2)	2	Ovarian(276;0.236)					TCCTACGACTCCGTTTTATGT	0.433													41	3					0	0	0.007835	0	0
ITIH5L	347365	broad.mit.edu	37	X	54783453	54783453	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:54783453G>A	uc004dtj.2	-	8	3084	c.3054C>T	c.(3052-3054)TTC>TTT	p.F1018F		NM_198510	NP_940912	Q6UXX5	ITH5L_HUMAN	inter-alpha (globulin) inhibitor H5-like	1018					hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			lung(2)|skin(2)|ovary(1)|breast(1)	6						AGGACTCCACGAACTTGGATT	0.522													13	1					0	0	0.003163	0	0
ZC4H2	55906	broad.mit.edu	37	X	64139046	64139046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:64139046G>A	uc004dvu.2	-	4	525	c.437C>T	c.(436-438)CCT>CTT	p.P146L	ZC4H2_uc004dvv.2_Missense_Mutation_p.P123L|ZC4H2_uc011mov.1_Missense_Mutation_p.P123L|ZC4H2_uc011mow.1_Intron|ZC4H2_uc004dvw.1_3'UTR	NM_018684	NP_061154	Q9NQZ6	ZC4H2_HUMAN	zinc finger, C4H2 domain containing	146							metal ion binding|protein binding			ovary(1)	1						GGGCTCCTGAGGTTCTGTCTG	0.552													24	3					0	0	0.007291	0	0
ZCCHC5	203430	broad.mit.edu	37	X	77912524	77912524	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:77912524G>A	uc004edc.1	-	2	1690	c.1394C>T	c.(1393-1395)GCC>GTC	p.A465V		NM_152694	NP_689907	Q8N8U3	ZCHC5_HUMAN	zinc finger, CCHC domain containing 5	465							nucleic acid binding|zinc ion binding			ovary(1)	1						CGCCTGCAGGGCCTGATGAGG	0.542													14	1					0	0	0.004007	0	0
ITM2A	9452	broad.mit.edu	37	X	78616621	78616621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:78616621C>T	uc004edh.2	-	6	1092	c.757G>A	c.(757-759)GAA>AAA	p.E253K	ITM2A_uc011mqr.1_Missense_Mutation_p.E209K	NM_004867	NP_004858	O43736	ITM2A_HUMAN	integral membrane protein 2A	253						integral to membrane	protein binding			lung(2)	2						ACAATAAATTCGTTGGGGAAG	0.353													19	1					0	0	0.003330	0	0
RPA4	29935	broad.mit.edu	37	X	96139470	96139470	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:96139470T>A	uc004efv.3	+	1	459	c.161T>A	c.(160-162)CTT>CAT	p.L54H	DIAPH2_uc004eft.3_Intron|DIAPH2_uc004efu.3_Intron|DIAPH2_uc004efs.2_Intron	NM_013347	NP_037479	Q13156	RFA4_HUMAN	replication protein A4, 34kDa	54					DNA damage checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair	DNA replication factor A complex|nucleoplasm	single-stranded DNA binding				0						GTGAACCAGCTTCTCAGCTCT	0.493								Other_identified_genes_with_known_or_suspected_DNA_repair_function					34	3					0	0	0.005524	0	0
TEX13A	56157	broad.mit.edu	37	X	104464658	104464658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:104464658C>T	uc004ema.2	-	2	536	c.424G>A	c.(424-426)GAG>AAG	p.E142K	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.E142K	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	142						intracellular	zinc ion binding			ovary(2)	2						TTGTCTCTCTCTTTCTGCACC	0.498													17	1					0	0	0.010504	0	0
RBM41	55285	broad.mit.edu	37	X	106312492	106312492	+	Silent	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:106312492G>A	uc004emz.2	-	6	1099	c.1068C>T	c.(1066-1068)ACC>ACT	p.T356T	RBM41_uc004emy.1_Silent_p.T356T	NM_018301	NP_060771	Q96IZ5	RBM41_HUMAN	RNA binding motif protein 41	356	RRM.						nucleotide binding|RNA binding			ovary(1)	1						TACTGGGAAAGGTGATAAAAG	0.423													29	6					0	0	0.009535	0	0
COL4A5	1287	broad.mit.edu	37	X	107807133	107807133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:107807133C>T	uc004enz.1	+	4	455	c.253C>T	c.(253-255)CCA>TCA	p.P85S	COL4A5_uc011mso.1_Missense_Mutation_p.P85S	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	85	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						AATTCCAGGGCCACCAGGACC	0.328									Alport_syndrome_with_Diffuse_Leiomyomatosis				9	2					0	0	0.008291	0	0
GUCY2F	2986	broad.mit.edu	37	X	108641814	108641814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:108641814C>T	uc004eod.3	-	11	2515	c.2239G>A	c.(2239-2241)GGT>AGT	p.G747S	GUCY2F_uc011msq.1_RNA	NM_001522	NP_001513	P51841	GUC2F_HUMAN	guanylate cyclase 2F precursor	747	Protein kinase.|Cytoplasmic (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway|visual perception	integral to plasma membrane|nuclear outer membrane	ATP binding|GTP binding|guanylate cyclase activity|protein kinase activity|receptor activity			lung(4)|breast(3)|central_nervous_system(1)	8						AATGGGGTACCCCGGACCATC	0.537													32	4					0	0	0.009535	0	0
TRPC5	7224	broad.mit.edu	37	X	111195414	111195414	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:111195414C>T	uc004epl.1	-	2	1154	c.235G>A	c.(235-237)GAG>AAG	p.E79K	TRPC5_uc004epm.1_Missense_Mutation_p.E79K	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	79	ANK 2.|Cytoplasmic (Potential).				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						TTCTCGTTCTCAATGGCAATG	0.532													44	8					0	0	0.013114	0	0
TRPC5	7224	broad.mit.edu	37	X	111195505	111195505	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:111195505C>T	uc004epl.1	-	2	1063	c.144G>A	c.(142-144)GTG>GTA	p.V48V	TRPC5_uc004epm.1_Silent_p.V48V	NM_012471	NP_036603	Q9UL62	TRPC5_HUMAN	transient receptor potential cation channel,	48	Cytoplasmic (Potential).|ANK 1.				axon guidance	calcium channel complex|integral to plasma membrane	protein binding|store-operated calcium channel activity			urinary_tract(1)	1						GGGCCTGCTTCACAGTGGCAT	0.547													33	7					0	0	0.003271	0	0
KLHL13	90293	broad.mit.edu	37	X	117079498	117079498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:117079498G>A	uc004eql.2	-	2	201	c.139C>T	c.(139-141)CTT>TTT	p.L47F	KLHL13_uc004eqk.2_5'UTR|KLHL13_uc011mtn.1_5'UTR|KLHL13_uc011mto.1_Missense_Mutation_p.L41F|KLHL13_uc011mtp.1_Missense_Mutation_p.L49F|KLHL13_uc004eqm.2_5'UTR|KLHL13_uc011mtq.1_Missense_Mutation_p.L31F	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	47					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CTGCCTCCAAGGGACAATTTC	0.428													31	2					0	0	0.009535	0	0
CT47A6	728062	broad.mit.edu	37	X	120094513	120094513	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:120094513C>T	uc004eth.2	-	1	825	c.570G>A	c.(568-570)CAG>CAA	p.Q190Q	CT47A1_uc004eti.2_Intron	NM_001080141	NP_001073610	Q5JQC4	CT47A_HUMAN	cancer/testis antigen family 47, member A6	190											0						ATGCGGCCTCCTGGATCAGGC	0.736													48	6					0	0	0.014410	0	0
CXorf66	347487	broad.mit.edu	37	X	139038683	139038683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:139038683C>T	uc004fbb.2	-	3	480	c.458G>A	c.(457-459)GGA>GAA	p.G153E		NM_001013403	NP_001013421	Q5JRM2	CX066_HUMAN	hypothetical protein LOC347487 precursor	153	Ser-rich.|Cytoplasmic (Potential).					integral to membrane					0						AGTTAACTTTCCTGCACTGTT	0.418													115	12					0	0	0.014410	0	0
SPANXN3	139067	broad.mit.edu	37	X	142596928	142596928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:142596928C>T	uc004fbw.2	-	2	230	c.142G>A	c.(142-144)GAA>AAA	p.E48K		NM_001009609	NP_001009609	Q5MJ09	SPXN3_HUMAN	SPANX-N3 protein	48										ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ATTGGATATTCTGATGTTTTT	0.378													40	3					0	0	0.008740	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303095	151303095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:151303095G>A	uc004ffk.2	-	5	1406	c.998C>T	c.(997-999)GCT>GTT	p.A333V	MAGEA10_uc004ffl.2_Missense_Mutation_p.A333V	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	333	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					ATCTTTCAAAGCCTCCTCATA	0.488													61	13					0	0	0.014410	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303315	151303315	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:151303315C>T	uc004ffk.2	-	5	1186	c.778G>A	c.(778-780)GAG>AAG	p.E260K	MAGEA10_uc004ffl.2_Missense_Mutation_p.E260K	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	260	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					ATGAGGTGCTCCATCCCATCA	0.532													45	6					0	0	0.010771	0	0
OPN1MW	2652	broad.mit.edu	37	X	153496229	153496229	+	Silent	SNP	C	T	T			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:153496229C>T	uc004fkd.2	+	5	1039	c.957C>T	c.(955-957)CCC>CCT	p.P319P		NM_000513	NP_000504	P04001	OPSG_HUMAN	opsin 1 (cone pigments), medium-wave-sensitive	319	Helical; Name=7; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity				0	all_cancers(53;1.83e-16)|all_epithelial(53;2.73e-10)|all_lung(58;6.39e-07)|Lung NSC(58;8.37e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TCTACAACCCCGTTATCTATG	0.547													49	83					0	0	0.014410	0	0
G6PD	2539	broad.mit.edu	37	X	153762623	153762623	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chrX:153762623G>A	uc004fly.1	-	6	687	c.574C>T	c.(574-576)CGT>TGT	p.R192C	G6PD_uc004flx.1_Missense_Mutation_p.R222C	NM_001042351	NP_001035810	P11413	G6PD_HUMAN	glucose-6-phosphate dehydrogenase isoform b	192					cellular response to oxidative stress|cholesterol biosynthetic process|cytokine production|erythrocyte maturation|glucose 6-phosphate metabolic process|glutathione metabolic process|negative regulation of protein glutathionylation|pentose-phosphate shunt, oxidative branch|ribose phosphate biosynthetic process	centrosome|cytosol|internal side of plasma membrane|intracellular membrane-bounded organelle	glucose binding|glucose-6-phosphate dehydrogenase activity|NADP binding|protein homodimerization activity			ovary(4)	4	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					TGGTCCTCACGGAACAGGGAG	0.637													31	3					0	0	0.009535	0	0
EPS15L1	58513	broad.mit.edu	37	19	16553011	16553011	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr19:16553011delA	uc002ndz.1	-	2	59	c.53delT	c.(52-54)TTGfs	p.L18fs	EPS15L1_uc002ndx.2_Frame_Shift_Del_p.L18fs|EPS15L1_uc002ndy.2_RNA|EPS15L1_uc010xpf.1_5'UTR|EPS15L1_uc002nea.1_Frame_Shift_Del_p.L18fs|EPS15L1_uc010eah.1_Frame_Shift_Del_p.L18fs|EPS15L1_uc002nec.1_Frame_Shift_Del_p.L18fs	NM_021235	NP_067058	Q9UBC2	EP15R_HUMAN	epidermal growth factor receptor pathway	18	EH 1.				endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	coated pit|nucleus|plasma membrane	calcium ion binding			ovary(3)|skin(2)	5						AGATTCATACAACGAATTTCC	0.428													12	22	---	---	---	---					
MIR663B	100302269	broad.mit.edu	37	2	133014651	133014652	+	RNA	INS	-	C	C	rs150907057		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr2:133014651_133014652insC	hsa-mir-663b|MI0006336	-			c.2_3insC			NCRNA00164_uc002ttj.3_Intron																	0						GGCCCTCGGCACCACCGAGACC	0.678													3	6	---	---	---	---					
MORC1	27136	broad.mit.edu	37	3	108682332	108682333	+	Frame_Shift_Del	DEL	TT	-	-			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:108682332_108682333delTT	uc003dxl.2	-	27	2814_2815	c.2727_2728delAA	c.(2725-2730)AAAAGAfs	p.K909fs	MORC1_uc011bhn.1_Frame_Shift_Del_p.K888fs	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	909_910	Potential.				cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						GAGATTTTTCTTTTATTTTCAC	0.297													36	40	---	---	---	---					
EIF4A2	1974	broad.mit.edu	37	3	186504015	186504015	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr3:186504015delA	uc003fqs.2	+	6	619	c.580delA	c.(580-582)AAGfs	p.K194fs	EIF4A2_uc003fqt.2_RNA|EIF4A2_uc003fqu.2_Frame_Shift_Del_p.K195fs|EIF4A2_uc003fqv.2_Frame_Shift_Del_p.K99fs|EIF4A2_uc003fqw.2_Frame_Shift_Del_p.K99fs|EIF4A2_uc011bsb.1_Frame_Shift_Del_p.K67fs|MIR1248_hsa-mir-1248|MI0006383_5'Flank|SNORA81_uc010hyv.1_5'Flank|SNORA63_uc010hyw.1_5'Flank|SNORA4_uc010hyx.1_5'Flank	NM_001967	NP_001958	Q14240	IF4A2_HUMAN	eukaryotic translation initiation factor 4A2	194	Helicase ATP-binding.				interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|protein binding|translation initiation factor activity			ovary(2)|breast(2)	4	all_cancers(143;2.68e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.07e-20)	GBM - Glioblastoma multiforme(93;0.0704)		CCGTGGTTTTAAGGATCAAAT	0.353			T	BCL6	NHL								11	25	---	---	---	---					
KIT	3815	broad.mit.edu	37	4	55599319	55599321	+	In_Frame_Del	DEL	AGA	-	-	rs121913506		TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr4:55599319_55599321delAGA	uc010igr.2	+	17	2532_2534	c.2445_2447delAGA	c.(2443-2448)AGAGAC>AGC	p.815_816RD>S	KIT_uc010igs.2_In_Frame_Del_p.811_812RD>S	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	815_816	Protein kinase.|Cytoplasmic (Potential).		D -> V (in mast cell leukemia and mastocytosis; somatic mutation; constitutively activated; loss of interaction with MPDZ).|D -> Y (in acute myeloid leukemia, mastocytosis and a germ cell tumor of the testis; somatic mutation; constitutively activated).|D -> F (in mastocytosis; requires 2 nucleotide substitutions; somatic mutation; constitutively activated).		male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity	p.D816V(660)|p.D816Y(41)|p.D816H(37)|p.D816F(6)|p.D816G(2)|p.D816>VVA(1)|p.D816N(1)|p.D816I(1)|p.D816A(1)|p.R815_D816insVI(1)		soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GTCTAGCCAGAGACATCAAGAAT	0.394		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				8	129	---	---	---	---					
SPEF2	79925	broad.mit.edu	37	5	35753811	35753811	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A17X-06A-11D-A197-08	TCGA-EE-A17X-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	c18d56f5-d557-41b3-8479-3875471de142	cce9aaa6-afce-45b9-907b-931afe0c75c5	g.chr5:35753811delG	uc003jjo.2	+	24	3527	c.3416delG	c.(3415-3417)TGGfs	p.W1139fs	SPEF2_uc003jjp.1_Frame_Shift_Del_p.W625fs	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1139					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AATGAGAGCTGGTTACAGGAC	0.507													50	32	---	---	---	---					
