Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
NBPF1	55672	broad.mit.edu	37	1	16918653	16918653	+	Splice_Site	SNP	C	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:16918653C>T	uc009vos.1	-	6	853	c.-35_splice	c.e6+1		NBPF1_uc010oce.1_Intron	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672							cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCTTAACTTACTGTTGTGAAA	0.418000													6	51					0	0	0.000274275	0	0
MAP3K6	9064	broad.mit.edu	37	1	27688678	27688678	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:27688678T>A	uc001bny.1	-	9	1568	c.1319A>T	c.(1318-1320)GAT>GTT	p.D440V	MAP3K6_uc009vsw.1_Missense_Mutation_p.D432V|MAP3K6_uc001bnz.1_5'Flank	NM_004672	NP_004663	O95382	M3K6_HUMAN	mitogen-activated protein kinase kinase kinase	440				MQYYWD -> ALWVPV (in Ref. 3; AAI29952).|MQYYWD -> HTWVPV (in Ref. 3; AAI29951).	activation of JUN kinase activity		ATP binding|magnesium ion binding|MAP kinase kinase kinase activity			breast(4)|lung(3)|ovary(1)|central_nervous_system(1)	9		all_lung(284;1.6e-05)|Lung NSC(340;2.92e-05)|Colorectal(325;3.46e-05)|Renal(390;0.0007)|Breast(348;0.0021)|Ovarian(437;0.0175)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.69e-27)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00132)|KIRC - Kidney renal clear cell carcinoma(1967;0.00163)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GAAACCCACATCCCAGTAATA	0.597000													13	8					0	0	0.000151284	0	0
ST6GALNAC3	256435	broad.mit.edu	37	1	76877888	76877888	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:76877888C>G	uc001dhh.2	+	3	572	c.409C>G	c.(409-411)CTA>GTA	p.L137V	ST6GALNAC3_uc001dhg.3_Missense_Mutation_p.L137V|ST6GALNAC3_uc010orh.1_Missense_Mutation_p.L72V	NM_152996	NP_694541	Q8NDV1	SIA7C_HUMAN	sialyltransferase 7C isoform 1	137	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane	sialyltransferase activity			ovary(3)|skin(2)	5						TCCTCTTTTGCTAAAAAACCC	0.418000													17	16					0	0	5.01169e-05	0	0
CLCA2	9635	broad.mit.edu	37	1	86896584	86896584	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:86896584G>T	uc001dlr.3	+	4	677	c.515G>T	c.(514-516)GGT>GTT	p.G172V		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	172	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		CTCCGTTGGGGTGTGTTCGAT	0.388000													49	52					2.12129e-23	6.63422e-22	0.000147903	1	0
CLCC1	23155	broad.mit.edu	37	1	109486124	109486124	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:109486124C>A	uc001dwe.1	-	6	767	c.675G>T	c.(673-675)TTG>TTT	p.L225F	AKNAD1_uc010ovb.1_Intron|CLCC1_uc001dwf.1_Missense_Mutation_p.L225F|CLCC1_uc001dwg.1_Missense_Mutation_p.L175F|CLCC1_uc009wes.1_Intron|CLCC1_uc009wet.1_Intron|CLCC1_uc001dwh.1_Missense_Mutation_p.L225F	NM_001048210	NP_001041675	Q96S66	CLCC1_HUMAN	Mid-1-related chloride channel 1 isoform 1	225	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|nucleus				liver(1)	1		all_epithelial(167;0.000114)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.231)		AATTCCATCCCAAACTGAACA	0.368000													12	278					0.000308642	0.00820473	0.000308642	1	0
NBPF9	400818	broad.mit.edu	37	1	144815953	144815953	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:144815953A>G	uc009wig.1	+	12	1400	c.1324A>G	c.(1324-1326)AAT>GAT	p.N442D	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.N442D|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Missense_Mutation_p.N171D|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.N102D	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	442	NBPF 2.					cytoplasm					0						CAACGATGACAATGAAGATGT	0.423000													15	72					0	0	0.000308642	0	0
NBPF9	400818	broad.mit.edu	37	1	144815968	144815968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:144815968G>A	uc009wig.1	+	12	1415	c.1339G>A	c.(1339-1341)GTT>ATT	p.V447I	NBPF9_uc010oxn.1_Intron|NBPF9_uc010oxo.1_Missense_Mutation_p.V447I|NBPF9_uc010oxr.1_Intron|NBPF9_uc010oxt.1_Intron|NBPF9_uc001ekg.1_Intron|NBPF9_uc001ekk.1_Intron|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|NBPF9_uc009wii.1_Missense_Mutation_p.V176I|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.V107I	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	447	NBPF 2.					cytoplasm					0						AGATGTTCAAGTTGAGGTGGC	0.423000													16	68					0	0	0.000175454	0	0
NTRK1	4914	broad.mit.edu	37	1	156844800	156844800	+	Missense_Mutation	SNP	C	G	G	rs34900547		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:156844800C>G	uc001fqh.1	+	11	1410	c.1354C>G	c.(1354-1356)CGC>GGC	p.R452G	NTRK1_uc001fqf.1_Missense_Mutation_p.R416G|NTRK1_uc009wsi.1_Missense_Mutation_p.R151G|NTRK1_uc001fqi.1_Missense_Mutation_p.R446G|NTRK1_uc009wsk.1_Missense_Mutation_p.R446G	NM_002529	NP_002520	P04629	NTRK1_HUMAN	neurotrophic tyrosine kinase, receptor, type 1	452	Cytoplasmic (Potential).				activation of adenylate cyclase activity|activation of MAPKK activity|activation of phospholipase C activity|cell differentiation|nerve growth factor receptor signaling pathway|nervous system development|phosphatidylinositol-mediated signaling|Ras protein signal transduction	endosome|integral to plasma membrane	ATP binding|neurotrophin receptor activity|transmembrane receptor protein serine/threonine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(9)|ovary(6)|stomach(1)|central_nervous_system(1)	17	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)				Imatinib(DB00619)	TGGGATCAACCGTGAGTCGGG	0.572000			T	TPM3|TPR|TFG	papillary thyroid					TSP Lung(10;0.080)			3	69					0	0	6.4e-05	0	0
FCGR2C	9103	broad.mit.edu	37	1	161569429	161569429	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:161569429C>G	uc001gav.2	+	8	907	c.808C>G	c.(808-810)CGT>GGT	p.R270G		NM_201563	NP_963857			Fc fragment of IgG, low affinity IIc, receptor												0	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			cccacctggacgtcaaatgat	0.134000													6	13					0	0	0.000157383	0	0
TROVE2	6738	broad.mit.edu	37	1	193051825	193051825	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:193051825G>C	uc001gss.2	+	8	1626	c.1451G>C	c.(1450-1452)AGG>ACG	p.R484T	TROVE2_uc001gst.1_Missense_Mutation_p.R209T|TROVE2_uc001gsu.1_Missense_Mutation_p.R209T|TROVE2_uc001gsv.1_Missense_Mutation_p.R484T|TROVE2_uc001gsw.2_Missense_Mutation_p.R484T|TROVE2_uc009wyp.2_Missense_Mutation_p.R484T|TROVE2_uc009wyq.2_Missense_Mutation_p.R484T|TROVE2_uc001gsx.1_Missense_Mutation_p.R484T	NM_004600	NP_004591	P10155	RO60_HUMAN	TROVE domain family, member 2 isoform 2	484					transcription from RNA polymerase III promoter	cytoplasm|nucleus|ribonucleoprotein complex	protein binding|RNA binding				0						ATTGCTCTGAGGGAGTATCGA	0.328000													3	65					0	0	6.4e-05	0	0
HSD17B7P2	158160	broad.mit.edu	37	10	38654432	38654432	+	Missense_Mutation	SNP	A	G	G	rs2257765		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr10:38654432A>G	uc010qex.1	+	5	599	c.524A>G	c.(523-525)AAT>AGT	p.N175S	HSD17B7P2_uc001izq.2_RNA|HSD17B7P2_uc001izo.1_RNA|HSD17B7P2_uc001izp.1_Missense_Mutation_p.N173S					SubName: Full=cDNA FLJ60462, highly similar to 3-keto-steroid reductase (EC 1.1.1.270);												0						TCATCTCGCAATGCAAGGAAA	0.453000													3	21					0	0	6.4e-05	0	0
PTEN	5728	broad.mit.edu	37	10	89717727	89717727	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr10:89717727G>T	uc001kfb.2	+	8	1783	c.752G>T	c.(751-753)GGT>GTT	p.G251V		NM_000314	NP_000305	P60484	PTEN_HUMAN	phosphatase and tensin homolog	251	C2 tensin-type.		G -> C (loss of phosphatase activity towards Ins(1,3,4,5)P4; retains ability to bind phospholipid membranes).		activation of mitotic anaphase-promoting complex activity|apoptosis|canonical Wnt receptor signaling pathway|cell proliferation|central nervous system development|induction of apoptosis|inositol phosphate dephosphorylation|negative regulation of cell migration|negative regulation of cyclin-dependent protein kinase activity involved in G1/S|negative regulation of focal adhesion assembly|negative regulation of G1/S transition of mitotic cell cycle|negative regulation of protein kinase B signaling cascade|negative regulation of protein phosphorylation|nerve growth factor receptor signaling pathway|phosphatidylinositol dephosphorylation|phosphatidylinositol-mediated signaling|positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process|positive regulation of sequence-specific DNA binding transcription factor activity|protein stabilization|regulation of neuron projection development|T cell receptor signaling pathway	cytosol|internal side of plasma membrane|PML body	anaphase-promoting complex binding|enzyme binding|inositol-1,3,4,5-tetrakisphosphate 3-phosphatase activity|lipid binding|magnesium ion binding|PDZ domain binding|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|phosphatidylinositol-3,4-bisphosphate 3-phosphatase activity|phosphatidylinositol-3-phosphatase activity|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity	p.R55fs*1(4)|p.G251C(4)|p.N212fs*1(2)|p.Y27fs*1(2)|p.G165_*404del(1)|p.?(1)|p.G165_K342del(1)|p.G251V(1)|p.G251fs*6(1)|p.G251D(1)		endometrium(831)|central_nervous_system(657)|skin(121)|haematopoietic_and_lymphoid_tissue(101)|large_intestine(99)|prostate(97)|breast(73)|lung(65)|ovary(58)|thyroid(29)|stomach(29)|upper_aerodigestive_tract(25)|cervix(24)|liver(20)|vulva(17)|kidney(15)|NS(14)|soft_tissue(13)|urinary_tract(12)|eye(8)|pancreas(6)|salivary_gland(5)|bone(5)|biliary_tract(4)|autonomic_ganglia(2)|meninges(2)|testis(1)|oesophagus(1)	2334		all_cancers(4;3.61e-31)|all_epithelial(4;3.96e-23)|Prostate(4;8.12e-23)|Breast(4;0.000111)|Melanoma(5;0.00146)|all_hematologic(4;0.00227)|Colorectal(252;0.00494)|all_neural(4;0.00513)|Acute lymphoblastic leukemia(4;0.0116)|Glioma(4;0.0274)|all_lung(38;0.132)	KIRC - Kidney renal clear cell carcinoma(1;0.214)	UCEC - Uterine corpus endometrioid carcinoma (6;0.000228)|all cancers(1;4.16e-84)|GBM - Glioblastoma multiforme(1;7.77e-49)|Epithelial(1;7.67e-41)|OV - Ovarian serous cystadenocarcinoma(1;6.22e-15)|BRCA - Breast invasive adenocarcinoma(1;1.1e-06)|Lung(2;3.18e-06)|Colorectal(12;4.88e-06)|LUSC - Lung squamous cell carcinoma(2;4.97e-06)|COAD - Colon adenocarcinoma(12;1.13e-05)|Kidney(1;0.000288)|KIRC - Kidney renal clear cell carcinoma(1;0.00037)|STAD - Stomach adenocarcinoma(243;0.218)		CCTGTGTGTGGTGATATCAAA	0.398000		31	D|Mis|N|F|S		glioma| prostate|endometrial	harmartoma|glioma| prostate|endometrial			Proteus_syndrome|Cowden_syndrome|Juvenile_Polyposis|Hereditary_Mixed_Polyposis_Syndrome_type_1|Bannayan-Riley-Ruvalcaba_syndrome	HNSCC(9;0.0022)|TCGA GBM(2;<1E-08)|TSP Lung(26;0.18)			17	1					1.01871e-10	3.00897e-09	0.000132079	1	0
SORCS3	22986	broad.mit.edu	37	10	107006985	107006985	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr10:107006985C>A	uc001kyi.1	+	22	3228	c.3001C>A	c.(3001-3003)CAG>AAG	p.Q1001K	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	1001	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGAATATTTCCAGTCCCAGCT	0.468000													5	0					3.59834e-05	0.00102488	3.59834e-05	1	0
SLC6A13	6540	broad.mit.edu	37	12	330229	330229	+	Missense_Mutation	SNP	C	T	T	rs141229734		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr12:330229C>T	uc001qic.1	-	15	1747	c.1694G>A	c.(1693-1695)CGT>CAT	p.R565H	SLC6A13_uc009zdj.1_Missense_Mutation_p.R555H|SLC6A13_uc010sdl.1_Missense_Mutation_p.R473H	NM_016615	NP_057699	Q9NSD5	S6A13_HUMAN	solute carrier family 6 (neurotransmitter	565	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(10;0.0416)|all_epithelial(11;0.0537)|all_lung(10;0.0989)|Lung NSC(10;0.139)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00153)|BRCA - Breast invasive adenocarcinoma(9;0.239)			CATGAGCTGACGGATTCTCTG	0.652000													8	17					0	0	2.17888e-05	0	0
TAS2R31	259290	broad.mit.edu	37	12	11183305	11183305	+	Missense_Mutation	SNP	C	G	G	rs149012476	by1000genomes	TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr12:11183305C>G	uc001qzo.1	-	1	702	c.630G>C	c.(628-630)CAG>CAC	p.Q210H	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176885	NP_795366	P59538	T2R31_HUMAN	taste receptor, type 2, member 31	210	Cytoplasmic (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						TACCATGGAGCTGCATCTTCT	0.428000													4	163					0	0	2.17888e-05	0	0
PCNX	22990	broad.mit.edu	37	14	71540341	71540341	+	Silent	SNP	T	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr14:71540341T>C	uc001xmo.2	+	27	5378	c.4932T>C	c.(4930-4932)CCT>CCC	p.P1644P	PCNX_uc010are.1_Silent_p.P1533P|PCNX_uc010arf.1_Silent_p.P432P	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1644						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		GTTGTGAACCTGGCCATATTC	0.453000													24	39					0	0	9.22233e-05	0	0
SNW1	22938	broad.mit.edu	37	14	78187103	78187103	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr14:78187103C>A	uc001xuf.2	-	12	1226	c.1199G>T	c.(1198-1200)CGG>CTG	p.R400L	SNW1_uc010tvm.1_Missense_Mutation_p.R325L|SNW1_uc010asu.2_Missense_Mutation_p.R238L|SNW1_uc010tvn.1_Missense_Mutation_p.R400L	NM_012245	NP_036377	Q13573	SNW1_HUMAN	SKI-interacting protein	400					negative regulation of transcription, DNA-dependent|nuclear mRNA splicing, via spliceosome|regulation of transcription from RNA polymerase II promoter	catalytic step 2 spliceosome|nucleoplasm	Notch binding			ovary(1)	1			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0291)		ATTGGAAGTCCGAGGATTAGG	0.388000													36	53					2.75727e-19	8.4574e-18	0.000159656	1	0
IGF1R	3480	broad.mit.edu	37	15	99440126	99440126	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr15:99440126G>C	uc002bul.2	+	4	1144	c.1094G>C	c.(1093-1095)CGA>CCA	p.R365P	IGF1R_uc010urq.1_Missense_Mutation_p.R365P|IGF1R_uc010bon.2_Missense_Mutation_p.R365P	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	365					anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	ATTAACATCCGACGGGGGAGT	0.443000													15	31					0	0	7.07596e-05	0	0
GSG1L	146395	broad.mit.edu	37	16	27974490	27974490	+	Silent	SNP	C	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr16:27974490C>T	uc002doz.2	-	2	469	c.384G>A	c.(382-384)CCG>CCA	p.P128P	GSG1L_uc010bya.1_Silent_p.P128P	NM_001109763	NP_001103233	Q6UXU4	GSG1L_HUMAN	GSG1-like isoform 1	128						integral to membrane				ovary(1)	1						TCTCCGATGCCGGGGCCAGGT	0.542000													8	17					0	0	2.17888e-05	0	0
DHX38	9785	broad.mit.edu	37	16	72130255	72130255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr16:72130255G>A	uc002fcb.2	+	2	554	c.199G>A	c.(199-201)GAT>AAT	p.D67N	TXNL4B_uc010cgl.2_5'Flank|TXNL4B_uc002fca.2_5'Flank|TXNL4B_uc010vmn.1_5'Flank|TXNL4B_uc010vmo.1_5'Flank|DHX38_uc010vmp.1_Missense_Mutation_p.D67N|DHX38_uc010cgn.1_5'Flank	NM_014003	NP_054722	Q92620	PRP16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 38	67					mRNA 3'-end processing|mRNA export from nucleus|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	catalytic step 2 spliceosome|nucleoplasm	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1		Ovarian(137;0.125)				GGAGAAGGACGATGGGGAGGA	0.572000													16	2					0	0	0.000422831	0	0
DNAH9	1770	broad.mit.edu	37	17	11554609	11554609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr17:11554609C>T	uc002gne.2	+	13	2389	c.2321C>T	c.(2320-2322)GCA>GTA	p.A774V	DNAH9_uc010coo.2_Missense_Mutation_p.A68V	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	774	Stem (By similarity).|Potential.				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CGCCTCAGAGCAGCAGAGGAG	0.423000													12	32					0	0	6.40141e-05	0	0
FMNL1	752	broad.mit.edu	37	17	43309817	43309817	+	Silent	SNP	G	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr17:43309817G>A	uc002iin.2	+	3	497	c.297G>A	c.(295-297)AAG>AAA	p.K99K	FMNL1_uc002iio.2_Silent_p.K54K|FMNL1_uc002iip.1_5'Flank	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	99	GBD/FH3.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						TCAGCCGAAAGGTAGCAGCTG	0.542000													10	16					0	0	6.40141e-05	0	0
CACNA1G	8913	broad.mit.edu	37	17	48695287	48695287	+	Silent	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr17:48695287C>G	uc002irk.1	+	30	5595	c.5223C>G	c.(5221-5223)CCC>CCG	p.P1741P	CACNA1G_uc002irj.1_Silent_p.P1707P|CACNA1G_uc002irl.1_Silent_p.P1718P|CACNA1G_uc002irm.1_Silent_p.P1707P|CACNA1G_uc002irn.1_Silent_p.P1700P|CACNA1G_uc002iro.1_Silent_p.P1707P|CACNA1G_uc002irp.1_Silent_p.P1741P|CACNA1G_uc002irq.1_Silent_p.P1718P|CACNA1G_uc002irr.1_Silent_p.P1741P|CACNA1G_uc002irs.1_Silent_p.P1730P|CACNA1G_uc002irt.1_Silent_p.P1723P|CACNA1G_uc002irv.1_Silent_p.P1730P|CACNA1G_uc002irw.1_Silent_p.P1718P|CACNA1G_uc002iru.1_Silent_p.P1707P|CACNA1G_uc002irx.1_Silent_p.P1654P|CACNA1G_uc002iry.1_Silent_p.P1643P|CACNA1G_uc002irz.1_Intron|CACNA1G_uc002isa.1_Silent_p.P1620P|CACNA1G_uc002isb.1_Silent_p.P1661P|CACNA1G_uc002isc.1_Silent_p.P1643P|CACNA1G_uc002isd.1_Intron|CACNA1G_uc002ise.1_Silent_p.P1609P|CACNA1G_uc002isf.1_Silent_p.P1636P|CACNA1G_uc002isg.1_Silent_p.P1602P|CACNA1G_uc002ish.1_Silent_p.P1609P|CACNA1G_uc002isi.1_Silent_p.P1597P	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	1741	IV.|Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	AGGCCCTGCCCCAGGTAGCCG	0.647000													3	53					0	0	6.4e-05	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342280	60342280	+	RNA	SNP	C	T	T	rs80012429		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr17:60342280C>T	uc010woz.1	-	14		c.1849G>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TTAATACATTCTCATAAGTTT	0.488000													10	88					0	0	7.07596e-05	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342294	60342294	+	RNA	SNP	A	C	C	rs76100965		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr17:60342294A>C	uc010woz.1	-	14		c.1835T>G				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						TAAGTTTAACAAAAAATAAAA	0.483000													10	86					0	0	9.7654e-05	0	0
TBC1D3P2	440452	broad.mit.edu	37	17	60342311	60342311	+	RNA	SNP	G	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr17:60342311G>T	uc010woz.1	-	14		c.1818C>A				NR_027486				Homo sapiens cDNA FLJ60189 complete cds, highly similar to TBC1 domain family member 3.												0						AAAACGAGGAGGCGAAGCTTG	0.458000													10	87					3.99206e-14	1.20138e-12	9.7654e-05	1	0
TMC8	147138	broad.mit.edu	37	17	76130030	76130030	+	Silent	SNP	G	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr17:76130030G>C	uc002jup.2	+	7	1147	c.765G>C	c.(763-765)CGG>CGC	p.R255R	TMC6_uc002jul.1_5'Flank|TMC8_uc002juq.2_Silent_p.R32R|TMC8_uc010wtr.1_5'Flank	NM_152468	NP_689681	Q8IU68	TMC8_HUMAN	transmembrane channel-like 8	255	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane					0			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)|OV - Ovarian serous cystadenocarcinoma(97;0.192)			TCTGCATCCGGGTGCAGGAAG	0.577000									Epidermodysplasia_Verruciformis_Familial_Clustering_of				3	50					0	0	6.4e-05	0	0
ZNF780A	284323	broad.mit.edu	37	19	40581535	40581535	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr19:40581535A>C	uc002omy.2	-	6	1039	c.814T>G	c.(814-816)TCT>GCT	p.S272A	ZNF780A_uc002omw.3_Intron|ZNF780A_uc002omz.2_Missense_Mutation_p.S272A|ZNF780A_uc010xvh.1_Missense_Mutation_p.S273A	NM_001010880	NP_001010880	O75290	Z780A_HUMAN	zinc finger protein 780A isoform b	272					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_cancers(60;9.55e-06)|all_lung(34;1.17e-07)|Lung NSC(34;1.41e-07)|Ovarian(47;0.0925)					TTTACACCAGAATGAATACTC	0.388000													4	125					0	0	0.00024832	0	0
DPYSL5	56896	broad.mit.edu	37	2	27157527	27157527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr2:27157527C>T	uc002rhu.3	+	8	1030	c.872C>T	c.(871-873)GCG>GTG	p.A291V	DPYSL5_uc002rhv.3_Missense_Mutation_p.A291V	NM_020134	NP_064519	Q9BPU6	DPYL5_HUMAN	dihydropyrimidinase-like 5	291					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides			ovary(2)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					TGGTCCCACGCGGCTGCCTAT	0.582000													51	66					0	0	0.000147903	0	0
CTNNA2	1496	broad.mit.edu	37	2	80101244	80101244	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr2:80101244C>G	uc010ysh.1	+	5	633	c.628C>G	c.(628-630)CGA>GGA	p.R210G	CTNNA2_uc010yse.1_Missense_Mutation_p.R210G|CTNNA2_uc010ysf.1_Missense_Mutation_p.R210G|CTNNA2_uc010ysg.1_Missense_Mutation_p.R210G	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	210					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						GGCAGCCGCCCGAGGGGCTCT	0.512000													3	33					0	0	0.00024832	0	0
POTEF	728378	broad.mit.edu	37	2	130877880	130877880	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr2:130877880G>C	uc010fmh.2	-	3	609	c.209C>G	c.(208-210)CCC>CGC	p.P70R		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	70						cell cortex	ATP binding			skin(3)|ovary(2)	5						CCTGCAGCAGGGGAAGCAGTG	0.592000													4	117					0	0	1.23904e-05	0	0
PSMD14	10213	broad.mit.edu	37	2	162267870	162267870	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr2:162267870C>G	uc002ubu.2	+	12	1359	c.892C>G	c.(892-894)CAG>GAG	p.Q298E		NM_005805	NP_005796	O00487	PSDE_HUMAN	proteasome 26S subunit, non-ATPase 14	298					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K63-linked deubiquitination|regulation of apoptosis|regulation of cellular amino acid metabolic process|regulation of proteasomal protein catabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	endopeptidase activator activity|metal ion binding|metallopeptidase activity|proteasome binding|ubiquitin thiolesterase activity			breast(1)	1						AAATATTGTCCAGTGTTTAGC	0.358000													3	40					0	0	1.23904e-05	0	0
NCOA3	8202	broad.mit.edu	37	20	46262905	46262905	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr20:46262905C>G	uc002xtk.2	+	10	1283	c.1078C>G	c.(1078-1080)CGA>GGA	p.R360G	NCOA3_uc010ght.1_Missense_Mutation_p.R370G|NCOA3_uc002xtl.2_Missense_Mutation_p.R360G|NCOA3_uc002xtm.2_Missense_Mutation_p.R360G|NCOA3_uc002xtn.2_Missense_Mutation_p.R360G|NCOA3_uc010zyc.1_Missense_Mutation_p.R155G	NM_181659	NP_858045	Q9Y6Q9	NCOA3_HUMAN	nuclear receptor coactivator 3 isoform a	360					androgen receptor signaling pathway|cellular lipid metabolic process|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleoplasm	androgen receptor binding|histone acetyltransferase activity|ligand-dependent nuclear receptor binding|protein N-terminus binding|signal transducer activity|thyroid hormone receptor binding			ovary(3)|lung(1)|skin(1)	5						AACAAATGATCGACATGGCTT	0.388000													31	50					0	0	0.000159656	0	0
MIR941-2	100126339	broad.mit.edu	37	20	62551131	62551131	+	RNA	SNP	G	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr20:62551131G>A	hsa-mir-941-2|MI0005764	+			c.31G>A			DNAJC5_uc002yhf.2_Intron|DNAJC5_uc002yhg.1_Intron|DNAJC5_uc002yhh.2_RNA|MIR941-3_hsa-mir-941-3|MI0005765_5'Flank																	0						CCCAGGGCCCGGGACAGCGCC	0.692000													5	21					0	0	8.12818e-05	0	0
SCAP	22937	broad.mit.edu	37	3	47462468	47462468	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr3:47462468T>C	uc003crh.1	-	11	1552	c.1297A>G	c.(1297-1299)ATG>GTG	p.M433V	SCAP_uc011baz.1_Missense_Mutation_p.M178V|SCAP_uc003crg.2_Missense_Mutation_p.M41V	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	433	SSD.|Helical; Name=6; (Potential).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		AAAAACAGCATCTGAAGGAAG	0.592000											OREG0015548	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	47	32					0	0	0.000147903	0	0
ATP13A3	79572	broad.mit.edu	37	3	194167834	194167834	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr3:194167834C>G	uc003fty.3	-	13	1721	c.1319G>C	c.(1318-1320)GGG>GCG	p.G440A	ATP13A3_uc003ftz.1_Missense_Mutation_p.G146A	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	440					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		AATTATGACCCCAACTTGTAC	0.368000													3	28					0	0	6.4e-05	0	0
OSMR	9180	broad.mit.edu	37	5	38881863	38881863	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr5:38881863A>G	uc003jln.1	+	4	782	c.415A>G	c.(415-417)AGT>GGT	p.S139G	OSMR_uc003jlm.1_Missense_Mutation_p.S139G	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	139	Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					GGAGGAAGTCAGTGGTAAGAA	0.428000													3	61					0	0	6.4e-05	0	0
SPZ1	84654	broad.mit.edu	37	5	79616461	79616461	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr5:79616461G>C	uc003kgn.2	+	1	672	c.427G>C	c.(427-429)GAG>CAG	p.E143Q	uc011ctk.1_Intron	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		AAAGAAACAGGAGATGATATT	0.358000													3	57					0	0	6.4e-05	0	0
TRIM38	10475	broad.mit.edu	37	6	25983718	25983718	+	Missense_Mutation	SNP	A	G	G	rs139300929		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr6:25983718A>G	uc003nfm.2	+	8	1636	c.1201A>G	c.(1201-1203)ACT>GCT	p.T401A	TRIM38_uc003nfn.2_Missense_Mutation_p.T383A|TRIM38_uc010jqd.2_Missense_Mutation_p.T37A	NM_006355	NP_006346	O00635	TRI38_HUMAN	tripartite motif-containing 38	401	B30.2/SPRY.				positive regulation of I-kappaB kinase/NF-kappaB cascade	intracellular	signal transducer activity|zinc ion binding				0						TTCTCCCCCAACTTCCCTTCA	0.507000													22	57					0	0	9.22233e-05	0	0
MLL3	58508	broad.mit.edu	37	7	151891141	151891141	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr7:151891141A>T	uc003wla.2	-	31	4832	c.4613T>A	c.(4612-4614)TTG>TAG	p.L1538*	MLL3_uc003wkz.2_Nonsense_Mutation_p.L599*	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1538					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AGGCTGTGGCAATGGAGTTGG	0.393000			N		medulloblastoma								22	0					0	0	7.16444e-05	0	0
DPYSL2	1808	broad.mit.edu	37	8	26509836	26509836	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr8:26509836C>A	uc003xfb.1	+	12	1695	c.1345C>A	c.(1345-1347)CAG>AAG	p.Q449K	DPYSL2_uc003xfa.2_Missense_Mutation_p.Q554K|DPYSL2_uc010luk.1_RNA|DPYSL2_uc011lah.1_Missense_Mutation_p.Q413K	NM_001386	NP_001377	Q16555	DPYL2_HUMAN	dihydropyrimidinase-like 2	449					axon guidance|pyrimidine base catabolic process|signal transduction	cytosol	dihydropyrimidinase activity|protein binding			large_intestine(1)	1		all_cancers(63;0.121)|Ovarian(32;2.68e-05)|all_epithelial(46;0.116)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|Epithelial(17;3.33e-10)|Colorectal(74;0.183)		GGTCATCAGCCAGGGGAAGAT	0.542000													5	36					0.000274275	0.00741473	0.000274275	1	0
CCNE2	9134	broad.mit.edu	37	8	95906253	95906253	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr8:95906253G>T	uc003yhc.2	-	3	218	c.109C>A	c.(109-111)CAG>AAG	p.Q37K	C8orf38_uc003yhe.1_5'Flank|C8orf38_uc003yhf.2_5'Flank|CCNE2_uc003yhd.2_Missense_Mutation_p.Q37K	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	37					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					TAAATCACCTGGGTAGTTTTC	0.468000													18	510					0.000132079	0.00369589	0.000132079	1	0
DNM1	1759	broad.mit.edu	37	9	130965819	130965819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr9:130965819G>A	uc011mau.1	+	1	157	c.70G>A	c.(70-72)GGC>AGC	p.G24S	CIZ1_uc004btw.2_Intron|CIZ1_uc004btv.2_Intron|DNM1_uc010mxr.2_Missense_Mutation_p.G24S|DNM1_uc011mat.1_Missense_Mutation_p.G24S	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	24					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						CTCTGCCATCGGCCAGAACGC	0.682000													9	11					0	0	3.86212e-05	0	0
MED22	6837	broad.mit.edu	37	9	136210997	136210997	+	Silent	SNP	C	T	T			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr9:136210997C>T	uc004cdc.2	-	4	630	c.396G>A	c.(394-396)GAG>GAA	p.E132E	MED22_uc004cdd.2_Silent_p.E132E	NM_133640	NP_598395	Q15528	MED22_HUMAN	mediator complex subunit 22 isoform b	132					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|mediator complex|soluble fraction	protein binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(145;1.14e-06)|Epithelial(140;8.2e-06)|all cancers(34;6.94e-05)		AGTAATACTCCTCCTCCAGCT	0.607000													24	24					0	0	9.22233e-05	0	0
SOHLH1	402381	broad.mit.edu	37	9	138590185	138590185	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr9:138590185T>A	uc004cgl.2	-	3	396	c.335A>T	c.(334-336)GAG>GTG	p.E112V	SOHLH1_uc010nbe.2_Missense_Mutation_p.E112V	NM_001012415	NP_001012415	Q5JUK2	SOLH1_HUMAN	spermatogenesis and oogenesis specific basic	112					cell differentiation|multicellular organismal development|oogenesis|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			breast(1)|central_nervous_system(1)	2		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;1.66e-07)|Epithelial(140;1.11e-06)|all cancers(34;6.45e-05)		AGCGTGCTGCTCCTGACTGGG	0.642000													27	32					0	0	0.000227799	0	0
TUBBP5	643224	broad.mit.edu	37	9	141071154	141071154	+	Missense_Mutation	SNP	T	C	C	rs150819761	by1000genomes	TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr9:141071154T>C	uc004com.2	+	4	818	c.557T>C	c.(556-558)GTC>GCC	p.V186A	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						GTGAACATGGTCCCGTTTCCC	0.632000													6	25					0	0	3.59834e-05	0	0
ZFX	7543	broad.mit.edu	37	X	24229387	24229387	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chrX:24229387C>G	uc004dbf.2	+	9	2570	c.2312C>G	c.(2311-2313)ACG>AGG	p.T771R	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Missense_Mutation_p.T810R|ZFX_uc010nfz.2_Missense_Mutation_p.T427R	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	771				T -> R (in Ref. 5).	regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						TCCATTCACACGAAAGACTAT	0.453000													34	4					0	0	0.000132358	0	0
NRK	203447	broad.mit.edu	37	X	105178259	105178259	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chrX:105178259G>C	uc004emd.2	+	20	3625	c.3322G>C	c.(3322-3324)GGT>CGT	p.G1108R	NRK_uc010npc.1_Missense_Mutation_p.G776R	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1108							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						GGAGCCAGGTGGTGGAAATGA	0.418000										HNSCC(51;0.14)			3	23					0	0	1.23904e-05	0	0
CCDC160	347475	broad.mit.edu	37	X	133379086	133379086	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chrX:133379086A>G	uc011mvj.1	+	2	577	c.256A>G	c.(256-258)ATT>GTT	p.I86V		NM_001101357	NP_001094827	A6NGH7	CC160_HUMAN	coiled-coil domain containing 160	86										skin(1)	1						CAAGAGAAACATTTCAAAGAA	0.294000													7	1					0	0	8.12818e-05	0	0
FLG	2312	broad.mit.edu	37	1	152276467	152276468	+	In_Frame_Ins	INS	-	GGA	GGA			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:152276467_152276468insGGA	uc001ezu.1	-	3	10930_10931	c.10894_10895insTCC	c.(10894-10896)CAG>CTCCAG	p.3631_3632insL		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3631_3632	Filaggrin 22.|Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCTGCTGACTGCTGGTGGTGG	0.554									Ichthyosis				8	645	---	---	---	---					
ITPKB	3707	broad.mit.edu	37	1	226924876	226924884	+	In_Frame_Del	DEL	CTGCCGCTG	-	-	rs11278152		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr1:226924876_226924884delCTGCCGCTG	uc010pvo.1	-	2	616_624	c.276_284delCAGCGGCAG	c.(274-285)AGCAGCGGCAGT>AGT	p.92_95SSGS>S	ITPKB_uc001hqh.2_In_Frame_Del_p.92_95SSGS>S	NM_002221	NP_002212	P27987	IP3KB_HUMAN	1D-myo-inositol-trisphosphate 3-kinase B	92_95							ATP binding|calmodulin binding|inositol trisphosphate 3-kinase activity			ovary(4)|central_nervous_system(1)	5		Prostate(94;0.0773)				GCTCACgctactgccgctgctgccgctgc	0.617													8	23	---	---	---	---					
MLEC	9761	broad.mit.edu	37	12	121134166	121134168	+	In_Frame_Del	DEL	GAA	-	-			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr12:121134166_121134168delGAA	uc001tyy.1	+	5	848_850	c.697_699delGAA	c.(697-699)GAAdel	p.E238del		NM_014730	NP_055545	Q14165	MLEC_HUMAN	malectin precursor	238	Poly-Glu.|Lumenal (Potential).				post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	carbohydrate binding			ovary(1)	1						gaaagaagaggaagaagaagaag	0.404													9	312	---	---	---	---					
ASF1B	55723	broad.mit.edu	37	19	14232424	14232424	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr19:14232424delG	uc002mye.2	-	3	494	c.322delC	c.(322-324)CGAfs	p.R108fs		NM_018154	NP_060624	Q9NVP2	ASF1B_HUMAN	anti-silencing function 1B	108	Interaction with CHAF1B.|Interaction with histone H3 (By similarity).				cell differentiation|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus					0						TAGCCCACTCGGATGAACTCC	0.587													22	35	---	---	---	---					
KALRN	8997	broad.mit.edu	37	3	123953675	123953675	+	Splice_Site	DEL	G	-	-			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr3:123953675delG	uc003ehg.2	+	3	270	c.143_splice	c.e3-1	p.G48_splice	KALRN_uc010hrv.1_Splice_Site_p.G48_splice|KALRN_uc003ehf.1_Splice_Site_p.G48_splice|KALRN_uc011bjy.1_Splice_Site_p.G48_splice	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1						apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CCTTCTTGCAGGGGGTCGTGA	0.488													2	4	---	---	---	---					
POU4F2	5458	broad.mit.edu	37	4	147560457	147560458	+	In_Frame_Ins	INS	-	GGC	GGC	rs67907220		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr4:147560457_147560458insGGC	uc003ikv.2	+	1	413_414	c.165_166insGGC	c.(163-168)insGGC	p.68_69insG		NM_004575	NP_004566	Q12837	PO4F2_HUMAN	Brn3b POU domain transcription factor	68_69					estrogen receptor signaling pathway|MAPKKK cascade|negative regulation of transcription from RNA polymerase II promoter	nuclear speck	RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription			breast(1)	1	all_hematologic(180;0.151)					ACGCTggtggtggcggcggcgg	0.386													2	4	---	---	---	---					
PURA	5813	broad.mit.edu	37	5	139494456	139494458	+	In_Frame_Del	DEL	CTT	-	-			TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr5:139494456_139494458delCTT	uc003lfa.2	+	1	749_751	c.690_692delCTT	c.(688-693)CGCTTC>CGC	p.F233del		NM_005859	NP_005850	Q00577	PURA_HUMAN	purine-rich element binding protein A	233					DNA unwinding involved in replication|DNA-dependent DNA replication initiation	DNA replication factor A complex	double-stranded telomeric DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|single-stranded DNA binding|transcription factor binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACAACAAGCGCTTCTTCTTCGAT	0.596													21	4	---	---	---	---					
C6orf223	221416	broad.mit.edu	37	6	43970503	43970504	+	In_Frame_Ins	INS	-	GCG	GCG	rs72369323		TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr6:43970503_43970504insGCG	uc003own.2	+	4	387_388	c.369_370insGCG	c.(367-372)insGCG	p.132_133insA	uc003owm.1_Intron|C6orf223_uc003owo.2_In_Frame_Ins_p.112_113insA	NM_153246	NP_694978	Q8N319	CF223_HUMAN	hypothetical protein LOC221416	132_133	Ala-rich.										0	all_cancers(18;2.28e-07)|all_epithelial(2;1.62e-08)|Lung NSC(15;0.000172)|all_lung(25;0.000533)|Hepatocellular(11;0.00309)|Ovarian(13;0.0437)		all cancers(41;0.00141)|Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.217)			CGGTAGAGCGCgcggcggcggc	0.639													4	8	---	---	---	---					
CAMSAP1	157922	broad.mit.edu	37	9	138715799	138715800	+	Frame_Shift_Ins	INS	-	T	T	rs148250832	byFrequency	TCGA-EE-A17Z-06A-11D-A196-08	TCGA-EE-A17Z-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	0f421d6c-acb9-470b-b315-a1f1375a4d1c	0f5f5be4-90e5-4ed4-abd6-595b4fe4806e	g.chr9:138715799_138715800insT	uc004cgr.3	-	10	1396_1397	c.1396_1397insA	c.(1396-1398)ACCfs	p.T466fs	CAMSAP1_uc004cgq.3_Frame_Shift_Ins_p.T356fs|CAMSAP1_uc010nbg.2_Frame_Shift_Ins_p.T188fs	NM_015447	NP_056262	Q5T5Y3	CAMP1_HUMAN	calmodulin regulated spectrin-associated protein	466						cytoplasm|microtubule				ovary(1)|central_nervous_system(1)|pancreas(1)	3				OV - Ovarian serous cystadenocarcinoma(145;1.4e-06)|Epithelial(140;1.11e-05)		GACTCACCTGGTTTTTTTTTCT	0.337													3	4	---	---	---	---					
