Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	980598	980599	+	Nonsense_Mutation	DNP	AC	GA	GA	rs145920099		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:980598_980599AC>GA	uc001ack.1	+	13	2362_2363	c.2312_2313AC>GA	c.(2311-2313)TAC>TGA	p.Y771*		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	771					axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		CAGACGCCCTACGGCTGCTGCC	0.688													5	11					0	0	0.004672	0	0
PRDM16	63976	broad.mit.edu	37	1	3334519	3334520	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:3334519_3334520CC>TT	uc001akf.2	+	11	2899_2900	c.2819_2820CC>TT	c.(2818-2820)TCC>TTT	p.S940F	PRDM16_uc001akc.2_Missense_Mutation_p.S939F|PRDM16_uc001akd.2_Missense_Mutation_p.S939F|PRDM16_uc001ake.2_Missense_Mutation_p.S940F|PRDM16_uc009vlh.2_Missense_Mutation_p.S640F	NM_022114	NP_071397	Q9HAZ2	PRD16_HUMAN	PR domain containing 16 isoform 1	940	Mediates interaction with SKI and regulation of TGF-beta signaling.|Interaction with CTBP1 and CTBP2 (By similarity).				brown fat cell differentiation|negative regulation of granulocyte differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of cellular respiration|transcription, DNA-dependent	transcriptional repressor complex	protein binding|sequence-specific DNA binding|transcription coactivator activity|zinc ion binding			lung(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7	all_cancers(77;0.00208)|all_epithelial(69;0.000732)|Ovarian(185;0.0634)|Lung NSC(156;0.109)|all_lung(157;0.111)	all_epithelial(116;2.03e-21)|all_lung(118;7.55e-09)|Lung NSC(185;1.28e-06)|Breast(487;0.000792)|Renal(390;0.00137)|Hepatocellular(190;0.00515)|Myeloproliferative disorder(586;0.0267)|Ovarian(437;0.0365)|Lung SC(97;0.114)|Medulloblastoma(700;0.134)		Epithelial(90;5.59e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.99e-20)|GBM - Glioblastoma multiforme(42;3.72e-11)|Colorectal(212;0.000425)|BRCA - Breast invasive adenocarcinoma(365;0.000946)|COAD - Colon adenocarcinoma(227;0.000968)|Kidney(185;0.00155)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0175)|Lung(427;0.137)		CCAACGCTCTCCGACCCCATCC	0.663			T	EVI1	MDS|AML								9	15					0	0	0.004672	0	0
CHD5	26038	broad.mit.edu	37	1	6202251	6202251	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:6202251C>T	uc001amb.1	-	15	2473	c.2373G>A	c.(2371-2373)CGG>CGA	p.R791R	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	791	Helicase ATP-binding.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		ACTCGTTCTCCCGAATCACCG	0.557													37	67					0	0	0.005524	0	0
CHD5	26038	broad.mit.edu	37	1	6203991	6203991	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:6203991C>T	uc001amb.1	-	13	2035	c.1935G>A	c.(1933-1935)AGG>AGA	p.R645R	CHD5_uc001ama.1_RNA|CHD5_uc001amc.1_RNA	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5	645	Chromo 2.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GCATCAGCTCCCTGGGAAACG	0.652													29	44					0	0	0.001512	0	0
CAMTA1	23261	broad.mit.edu	37	1	7724037	7724037	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:7724037C>T	uc001aoi.2	+	9	1637	c.1430C>T	c.(1429-1431)CCA>CTA	p.P477L		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	477					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CGGAAGATTCCAGAAACCACC	0.597													14	38					0	0	0.004007	0	0
SLC2A5	6518	broad.mit.edu	37	1	9098036	9098036	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:9098036G>A	uc001apo.2	-	11	1514	c.1222C>T	c.(1222-1224)CGG>TGG	p.R408W	SLC2A5_uc010nzy.1_Missense_Mutation_p.R349W|SLC2A5_uc010nzz.1_Missense_Mutation_p.R293W|SLC2A5_uc010oaa.1_Missense_Mutation_p.R364W|SLC2A5_uc010oab.1_Missense_Mutation_p.R408W	NM_003039	NP_003030	P22732	GTR5_HUMAN	solute carrier family 2 (facilitated	408	Cytoplasmic (Potential).				carbohydrate metabolic process	integral to membrane|plasma membrane	fructose transmembrane transporter activity|glucose transmembrane transporter activity			pancreas(2)|ovary(1)	3	Ovarian(185;0.112)|all_lung(157;0.185)	all_epithelial(116;1.34e-15)|all_lung(118;9.46e-05)|Lung NSC(185;0.000172)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.00715)|Hepatocellular(190;0.0228)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.104)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;7.78e-07)|COAD - Colon adenocarcinoma(227;8.83e-05)|Kidney(185;0.000286)|KIRC - Kidney renal clear cell carcinoma(229;0.00103)|STAD - Stomach adenocarcinoma(132;0.0019)|BRCA - Breast invasive adenocarcinoma(304;0.00199)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGATGGCCGAGAGGACTGC	0.647													12	16					0	0	0.000978	0	0
ANGPTL7	10218	broad.mit.edu	37	1	11254942	11254942	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:11254942C>T	uc001ase.2	+	5	1142	c.903C>T	c.(901-903)TCC>TCT	p.S301S	MTOR_uc001asd.2_Intron	NM_021146	NP_066969	O43827	ANGL7_HUMAN	angiopoietin-like 7 precursor	301	Fibrinogen C-terminal.				response to oxidative stress|signal transduction	extracellular region	receptor binding				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.39e-06)|COAD - Colon adenocarcinoma(227;0.000244)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0487)		GCACAGACTCCAACCTCAATG	0.517													10	24					0	0	0.000673	0	0
MTOR	2475	broad.mit.edu	37	1	11300598	11300598	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:11300598G>A	uc001asd.2	-	11	1669	c.1548C>T	c.(1546-1548)GCC>GCT	p.A516A		NM_004958	NP_004949	P42345	MTOR_HUMAN	FK506 binding protein 12-rapamycin associated	516					cell growth|cellular response to hypoxia|insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|protein autophosphorylation|protein catabolic process|response to amino acid stimulus|response to nutrient|T cell costimulation|TOR signaling cascade	endoplasmic reticulum membrane|Golgi membrane|lysosome|mitochondrial outer membrane|phosphatidylinositol 3-kinase complex|PML body|TORC1 complex|TORC2 complex	ATP binding|phosphoprotein binding|protein serine/threonine kinase activity			central_nervous_system(7)|lung(6)|ovary(6)|skin(3)|kidney(3)|large_intestine(2)|breast(2)	29						CTGCAGTGAGGGCAGGGCTGA	0.517													17	43					0	0	0.001216	0	0
UBIAD1	29914	broad.mit.edu	37	1	11346122	11346122	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:11346122C>T	uc001asg.2	+	2	1285	c.951C>T	c.(949-951)CTC>CTT	p.L317L		NM_013319	NP_037451	Q9Y5Z9	UBIA1_HUMAN	UbiA prenyltransferase domain containing 1	317	Helical; (Potential).				menaquinone biosynthetic process	endoplasmic reticulum membrane|integral to membrane|mitochondrion|nucleus	prenyltransferase activity				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.012)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.52e-06)|COAD - Colon adenocarcinoma(227;0.000254)|BRCA - Breast invasive adenocarcinoma(304;0.000299)|Kidney(185;0.000754)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.00727)|READ - Rectum adenocarcinoma(331;0.0487)		AGCTCAACCTCCTGCTGGGAC	0.547													18	34					0	0	0.006122	0	0
LOC649330	649330	broad.mit.edu	37	1	12908051	12908051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:12908051G>A	uc009vno.2	-	1	187	c.92C>T	c.(91-93)TCG>TTG	p.S31L	HNRNPCL1_uc010obf.1_Missense_Mutation_p.S31L	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	31							nucleic acid binding|nucleotide binding				0						CTCCACATCCGATTTCTTGAC	0.463													6	63					0	0	0.001984	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921316	12921316	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:12921316C>T	uc001aum.1	+	4	1194	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	369	LRR 2.										0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TCAGTGCCATCCTGCCTGGCC	0.562													38	64					0	0	0.003755	0	0
PRAMEF4	400735	broad.mit.edu	37	1	12943141	12943141	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:12943141C>T	uc001aun.2	-	2	146	c.75G>A	c.(73-75)TTG>TTA	p.L25L		NM_001009611	NP_001009611	O60810	PRAM4_HUMAN	PRAME family member 4	25										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;3.67e-05)|all_lung(284;4.03e-05)|Renal(390;0.000147)|Breast(348;0.000278)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGGACATGGCCAAAGCTTGGT	0.582													49	91					0	0	0.003610	0	0
PRAMEF13	400736	broad.mit.edu	37	1	13448286	13448286	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:13448286G>A	uc010obi.1	-	4	1292	c.1189C>T	c.(1189-1191)CTG>TTG	p.L397L	PRAMEF14_uc009vnt.1_Silent_p.L349L	NM_001024661	NP_001019832	Q5VWM6	PRA13_HUMAN	PRAME family member 13	397											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;9.86e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|COAD - Colon adenocarcinoma(227;0.000502)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCGCAACAGGTCCTTCAGG	0.547													22	42					0	0	0.001512	0	0
PADI1	29943	broad.mit.edu	37	1	17531800	17531800	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:17531800C>T	uc001bah.1	+	1	180	c.88C>T	c.(88-90)CAC>TAC	p.H30Y		NM_013358	NP_037490	Q9ULC6	PADI1_HUMAN	peptidylarginine deiminase type I	30					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity				0		Colorectal(325;3.46e-05)|Breast(348;0.000162)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.00054)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00522)|BRCA - Breast invasive adenocarcinoma(304;1.3e-05)|COAD - Colon adenocarcinoma(227;1.31e-05)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(196;0.0069)|READ - Rectum adenocarcinoma(331;0.0681)|Lung(427;0.197)	L-Citrulline(DB00155)	TGTGGACATTCACAGGTAAGA	0.577													4	19					0	0	0.000602	0	0
PADI3	51702	broad.mit.edu	37	1	17597630	17597630	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:17597630C>T	uc001bai.2	+	9	1044	c.1004C>T	c.(1003-1005)ACC>ATC	p.T335I		NM_016233	NP_057317	Q9ULW8	PADI3_HUMAN	peptidyl arginine deiminase, type III	335					peptidyl-citrulline biosynthetic process from peptidyl-arginine	cytoplasm	calcium ion binding|protein-arginine deiminase activity			ovary(1)|breast(1)	2		Colorectal(325;3.46e-05)|Breast(348;0.000162)|all_lung(284;0.000337)|Lung NSC(340;0.000419)|Renal(390;0.000518)|Ovarian(437;0.00409)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00488)|BRCA - Breast invasive adenocarcinoma(304;1.17e-05)|COAD - Colon adenocarcinoma(227;1.18e-05)|Kidney(64;0.000186)|KIRC - Kidney renal clear cell carcinoma(64;0.00272)|STAD - Stomach adenocarcinoma(196;0.00656)|READ - Rectum adenocarcinoma(331;0.0655)|Lung(427;0.189)	L-Citrulline(DB00155)	TGCAAGCTGACCATCTGCCCA	0.632													15	13					0	0	0.004990	0	0
RCC2	55920	broad.mit.edu	37	1	17752038	17752038	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:17752038C>T	uc001bal.2	-	3	569	c.522G>A	c.(520-522)TGG>TGA	p.W174*	RCC2_uc001bam.2_Nonsense_Mutation_p.W174*	NM_001136204	NP_001129676	Q9P258	RCC2_HUMAN	regulator of chromosome condensation 2	174	RCC1 2.				cell division|mitotic prometaphase	chromosome, centromeric region|cytosol|microtubule|nucleolus|spindle					0		Colorectal(325;0.000147)|Breast(348;0.00122)|Renal(390;0.00145)|all_lung(284;0.0054)|Lung NSC(340;0.00566)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00492)|BRCA - Breast invasive adenocarcinoma(304;7.69e-06)|COAD - Colon adenocarcinoma(227;1.19e-05)|Kidney(64;0.000189)|KIRC - Kidney renal clear cell carcinoma(64;0.00273)|STAD - Stomach adenocarcinoma(196;0.0135)|READ - Rectum adenocarcinoma(331;0.0656)|Lung(427;0.19)		GGTACTCACCCCAGCTCCACA	0.627													4	4					0	0	0.000602	0	0
TMCO4	255104	broad.mit.edu	37	1	20066335	20066335	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:20066335G>A	uc001bcn.2	-	12	1403	c.1161C>T	c.(1159-1161)ATC>ATT	p.I387I	TMCO4_uc001bcm.2_Intron|TMCO4_uc001bco.1_Silent_p.I387I|TMCO4_uc001bcp.1_Silent_p.I347I	NM_181719	NP_859070	Q5TGY1	TMCO4_HUMAN	transmembrane and coiled-coil domains 4	387						integral to membrane					0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00519)|Breast(348;0.00526)|Lung NSC(340;0.00544)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00708)|COAD - Colon adenocarcinoma(152;2.28e-05)|BRCA - Breast invasive adenocarcinoma(304;5.8e-05)|Kidney(64;0.000367)|GBM - Glioblastoma multiforme(114;0.000377)|KIRC - Kidney renal clear cell carcinoma(64;0.00459)|STAD - Stomach adenocarcinoma(196;0.0072)|READ - Rectum adenocarcinoma(331;0.0862)|Lung(427;0.223)		GGGAGAGCAGGATGTGGGCCA	0.592													15	31					0	0	0.002450	0	0
PLA2G2D	26279	broad.mit.edu	37	1	20442830	20442830	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:20442830C>T	uc001bcz.2	-	2	198	c.181G>A	c.(181-183)GAC>AAC	p.D61N	PLA2G2D_uc009vpo.2_RNA	NM_012400	NP_036532	Q9UNK4	PA2GD_HUMAN	phospholipase A2, group IID precursor	61					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.000175)|GBM - Glioblastoma multiforme(114;0.000798)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		AGTTACCAGTCCGTGGCATCT	0.527										Multiple Myeloma(11;0.12)			20	27					0	0	0.001882	0	0
KIF17	57576	broad.mit.edu	37	1	21011438	21011439	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:21011438_21011439CC>TT	uc001bdr.3	-	10	2212_2213	c.2094_2095GG>AA	c.(2092-2097)CAGGCC>CAAACC	p.A699T	KIF17_uc001bdp.3_5'UTR|KIF17_uc001bdq.3_5'UTR|KIF17_uc009vpx.2_Missense_Mutation_p.A69T|KIF17_uc001bds.3_Missense_Mutation_p.A699T	NM_020816	NP_065867	Q9P2E2	KIF17_HUMAN	kinesin family member 17 isoform a	699					microtubule-based movement|protein transport	cytoplasm|microtubule	ATP binding			ovary(3)|skin(1)	4		all_lung(284;2.99e-05)|Lung NSC(340;3.26e-05)|Colorectal(325;3.46e-05)|Renal(390;9.67e-05)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|COAD - Colon adenocarcinoma(152;1.43e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000168)|Kidney(64;0.000221)|GBM - Glioblastoma multiforme(114;0.000651)|KIRC - Kidney renal clear cell carcinoma(64;0.0031)|STAD - Stomach adenocarcinoma(196;0.00336)|READ - Rectum adenocarcinoma(331;0.0686)|Lung(427;0.209)		GCCACCGGGGCCTGAGCCTCCA	0.649													3	6					0	0	0.004672	0	0
MDS2	259283	broad.mit.edu	37	1	23908083	23908083	+	RNA	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:23908083G>A	uc001bhi.3	+	1		c.99G>A								Homo sapiens MDS2 gene.											ovary(2)	2						CCTTGGGAGGGACTGTGAAGA	0.388			T	ETV6	MDS								5	7					0	0	0.001168	0	0
HMGCL	3155	broad.mit.edu	37	1	24147083	24147083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:24147083C>T	uc001bib.2	-	2	105	c.61G>A	c.(61-63)GTC>ATC	p.V21I	HMGCL_uc010oec.1_Missense_Mutation_p.V21I|HMGCL_uc009vqr.2_Missense_Mutation_p.V21I|HMGCL_uc001bic.2_5'UTR|HMGCL_uc009vqs.1_Missense_Mutation_p.V21I|HMGCL_uc001bid.1_Missense_Mutation_p.V21I	NM_000191	NP_000182	P35914	HMGCL_HUMAN	3-hydroxy-3-methylglutaryl CoA lyase isoform 1	21					acetoacetic acid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA lyase activity|metal ion binding			central_nervous_system(1)	1		Colorectal(325;3.46e-05)|Renal(390;0.000219)|Lung NSC(340;0.000233)|all_lung(284;0.000321)|Ovarian(437;0.00348)|Breast(348;0.0044)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;2.38e-24)|Colorectal(126;5.58e-08)|COAD - Colon adenocarcinoma(152;3.12e-06)|GBM - Glioblastoma multiforme(114;4.9e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000982)|KIRC - Kidney renal clear cell carcinoma(1967;0.0034)|STAD - Stomach adenocarcinoma(196;0.0128)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.0856)|LUSC - Lung squamous cell carcinoma(448;0.188)		GAGGTGCTGACCTTTGGTTTA	0.403													23	54					0	0	0.003954	0	0
TMEM57	55219	broad.mit.edu	37	1	25812149	25812149	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:25812149C>T	uc001bkk.2	+	8	1561	c.1359C>T	c.(1357-1359)ATC>ATT	p.I453I	TMEM57_uc009vru.2_Silent_p.I226I|TMEM57_uc009vrv.2_Silent_p.I95I	NM_018202	NP_060672	Q8N5G2	MACOI_HUMAN	transmembrane protein 57	453						axon|integral to membrane|neuron projection terminus|nuclear membrane|synapse part					0		Colorectal(325;0.000147)|Renal(390;0.00211)|Lung NSC(340;0.00715)|all_lung(284;0.00989)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0675)|all_neural(195;0.201)		UCEC - Uterine corpus endometrioid carcinoma (279;0.042)|OV - Ovarian serous cystadenocarcinoma(117;1.85e-26)|Colorectal(126;2.99e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.000751)|STAD - Stomach adenocarcinoma(196;0.000766)|BRCA - Breast invasive adenocarcinoma(304;0.000986)|GBM - Glioblastoma multiforme(114;0.0191)|READ - Rectum adenocarcinoma(331;0.0649)		AGCAGAATATCAGCCAGTTGG	0.353													21	50					0	0	0.001882	0	0
MAN1C1	57134	broad.mit.edu	37	1	26085109	26085109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:26085109G>A	uc001bkm.2	+	6	1286	c.956G>A	c.(955-957)GGC>GAC	p.G319D	MAN1C1_uc009vry.1_Missense_Mutation_p.G139D	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	319	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		GCCACAGCCGGCAGCAGCAGC	0.577													8	21					0	0	0.004482	0	0
RPS6KA1	6195	broad.mit.edu	37	1	26887601	26887601	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:26887601C>T	uc001bmr.1	+	16	1570	c.1407C>T	c.(1405-1407)CAC>CAT	p.H469H	RPS6KA1_uc010ofe.1_Silent_p.H377H|RPS6KA1_uc010off.1_Silent_p.H453H|RPS6KA1_uc001bms.1_Silent_p.H478H|RPS6KA1_uc009vsl.1_Silent_p.H312H	NM_002953	NP_002944	Q15418	KS6A1_HUMAN	ribosomal protein S6 kinase, 90kDa, polypeptide	469	Protein kinase 2.				axon guidance|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|caspase inhibitor activity|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(1)	1		all_cancers(24;2.49e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.00571)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;1.12e-50)|OV - Ovarian serous cystadenocarcinoma(117;2.89e-29)|Colorectal(126;1.4e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000537)|KIRC - Kidney renal clear cell carcinoma(1967;0.000759)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.0361)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.161)|LUSC - Lung squamous cell carcinoma(448;0.234)		ATGGCCAGCACCCCAACATCA	0.512													14	20					0	0	0.003163	0	0
GPATCH3	63906	broad.mit.edu	37	1	27223982	27223982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:27223982G>A	uc001bne.2	-	2	715	c.686C>T	c.(685-687)TCC>TTC	p.S229F	GPATCH3_uc009vsp.1_Missense_Mutation_p.S40F	NM_022078	NP_071361	Q96I76	GPTC3_HUMAN	G patch domain containing 3	229						intracellular	nucleic acid binding				0		all_cancers(24;1.29e-21)|all_epithelial(13;2.35e-19)|Colorectal(325;0.000147)|all_lung(284;0.00122)|Lung NSC(340;0.00128)|Breast(348;0.00131)|Renal(390;0.00211)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0707)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|Epithelial(14;3.97e-51)|OV - Ovarian serous cystadenocarcinoma(117;9.55e-30)|Colorectal(126;5.31e-09)|COAD - Colon adenocarcinoma(152;9.31e-07)|BRCA - Breast invasive adenocarcinoma(304;0.000513)|STAD - Stomach adenocarcinoma(196;0.000595)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|READ - Rectum adenocarcinoma(331;0.0419)		GTAGCGCCGGGAGGAACCTGT	0.577													31	69					0	0	0.002096	0	0
FAM76A	199870	broad.mit.edu	37	1	28071294	28071294	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:28071294C>T	uc001boq.2	+	5	586	c.484C>T	c.(484-486)CGC>TGC	p.R162C	FAM76A_uc009vtb.2_Missense_Mutation_p.R162C|FAM76A_uc001bor.2_Missense_Mutation_p.R196C|FAM76A_uc001bos.2_Missense_Mutation_p.R196C|FAM76A_uc001bot.2_Missense_Mutation_p.R162C|FAM76A_uc010ofm.1_Missense_Mutation_p.R111C	NM_152660	NP_689873	Q8TAV0	FA76A_HUMAN	hypothetical protein LOC199870 isoform 3	162											0		Colorectal(325;0.000147)|all_lung(284;0.00181)|Lung NSC(340;0.00278)|Renal(390;0.00357)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0429)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-24)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;1.75e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00253)|KIRC - Kidney renal clear cell carcinoma(1967;0.00292)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0649)		GCAGTATAGTCGCCTGAGTGG	0.488													13	30					0	0	0.003163	0	0
EPB41	2035	broad.mit.edu	37	1	29314203	29314203	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:29314203C>T	uc001brm.1	+	1	261	c.254C>T	c.(253-255)TCG>TTG	p.S85L	EPB41_uc001brg.1_5'UTR|EPB41_uc001brh.1_5'UTR|EPB41_uc001bri.1_Missense_Mutation_p.S85L|EPB41_uc001brj.1_5'UTR|EPB41_uc009vtk.1_Missense_Mutation_p.S85L|EPB41_uc001brk.2_Missense_Mutation_p.S85L|EPB41_uc001brl.1_Missense_Mutation_p.S85L|EPB41_uc009vtl.1_5'UTR|EPB41_uc009vtm.1_5'UTR	NM_203342	NP_976217	P11171	41_HUMAN	erythrocyte membrane protein band 4.1	85					blood circulation|cortical actin cytoskeleton organization|positive regulation of protein binding	extrinsic to membrane|Golgi apparatus|nucleus|plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	1-phosphatidylinositol binding|actin binding|spectrin binding|structural constituent of cytoskeleton			ovary(1)	1		Colorectal(325;3.46e-05)|Prostate(1639;0.000244)|Lung NSC(340;0.00328)|all_lung(284;0.00412)|Breast(348;0.00765)|all_neural(195;0.0199)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)|Medulloblastoma(700;0.123)		Colorectal(126;3.12e-07)|COAD - Colon adenocarcinoma(152;1.21e-05)|STAD - Stomach adenocarcinoma(196;0.00395)|KIRC - Kidney renal clear cell carcinoma(1967;0.0249)|BRCA - Breast invasive adenocarcinoma(304;0.0289)|READ - Rectum adenocarcinoma(331;0.0757)		CTATTCTCCTCGTTTCTCAAA	0.433													34	58					0	0	0.003755	0	0
KHDRBS1	10657	broad.mit.edu	37	1	32498788	32498788	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:32498788G>A	uc001bub.2	+	4	731	c.625_splice	c.e4-1	p.E209_splice	KHDRBS1_uc001bua.1_Splice_Site_p.E170_splice|KHDRBS1_uc001buc.1_Splice_Site	NM_006559	NP_006550	Q07666	KHDR1_HUMAN	KH domain containing, RNA binding, signal						cell cycle arrest|cell proliferation|cell surface receptor linked signaling pathway|G2/M transition of mitotic cell cycle|mRNA processing|negative regulation of transcription, DNA-dependent|regulation of RNA export from nucleus|transcription, DNA-dependent	membrane|nucleus	DNA binding|RNA binding|SH3 domain binding|SH3/SH2 adaptor activity			ovary(1)	1		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)				TTTTTCCATAGGAGGAAGAGC	0.458													16	21					0	0	0.003163	0	0
CSMD2	114784	broad.mit.edu	37	1	34035068	34035068	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:34035068G>A	uc001bxn.1	-	53	8072	c.8043C>T	c.(8041-8043)ATC>ATT	p.I2681I	CSMD2_uc001bxm.1_Silent_p.I2679I	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2681	Sushi 17.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TGCAGGAGAAGATGGCTGTTG	0.562													12	35					0	0	0.001368	0	0
CSMD2	114784	broad.mit.edu	37	1	34401395	34401395	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:34401395G>A	uc001bxn.1	-	4	587	c.558C>T	c.(556-558)AGC>AGT	p.S186S	CSMD2_uc001bxm.1_Silent_p.S226S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	186	Sushi 1.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CCCACGTGGCGCTGTTCTCAG	0.632													11	25					0	0	0.000673	0	0
C1orf94	84970	broad.mit.edu	37	1	34677852	34677852	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:34677852C>T	uc001bxs.3	+	6	1395	c.996C>T	c.(994-996)TTC>TTT	p.F332F	C1orf94_uc001bxt.2_Silent_p.F522F	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	332							protein binding				0		Myeloproliferative disorder(586;0.0393)				AGCAGATCTTCCGCTCTTCCT	0.488													16	31					0	0	0.001216	0	0
ZMYM6	9204	broad.mit.edu	37	1	35477575	35477576	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:35477575_35477576GG>AA	uc001byh.2	-	8	1205_1206	c.977_978CC>TT	c.(976-978)ACC>ATT	p.T326I	ZMYM6_uc001byf.1_Missense_Mutation_p.T326I|ZMYM6_uc010oht.1_Missense_Mutation_p.T229I|ZMYM6_uc009vup.2_Missense_Mutation_p.T132I|ZMYM6_uc009vuq.1_Missense_Mutation_p.T326I|ZMYM6_uc009vur.1_Missense_Mutation_p.T132I	NM_007167	NP_009098	O95789	ZMYM6_HUMAN	zinc finger protein 258	326	MYM-type 4.				multicellular organismal development	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.13)				GGATTGCTGAGGTTTTACAACT	0.376													7	30					0	0	0.004672	0	0
MAP7D1	55700	broad.mit.edu	37	1	36643568	36643568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:36643568C>T	uc001bzz.2	+	9	1690	c.1474C>T	c.(1474-1476)CCA>TCA	p.P492S	MAP7D1_uc001caa.2_Missense_Mutation_p.P460S|MAP7D1_uc001cab.2_Missense_Mutation_p.P455S|MAP7D1_uc001cac.2_Missense_Mutation_p.P192S|MAP7D1_uc001cad.2_Missense_Mutation_p.P38S	NM_018067	NP_060537	Q3KQU3	MA7D1_HUMAN	MAP7 domain containing 1	492	Pro-rich.					cytoplasm|spindle				ovary(3)|breast(2)	5		Myeloproliferative disorder(586;0.0393)				CACTCTGCCTCCAAAGCCACC	0.692													6	32					0	0	0.001168	0	0
OSCP1	127700	broad.mit.edu	37	1	36884634	36884634	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:36884634T>C	uc001cap.2	-	10	1093	c.1011A>G	c.(1009-1011)CCA>CCG	p.P337P	OSCP1_uc001caq.2_Silent_p.P327P	NM_145047	NP_659484	Q8WVF1	OSCP1_HUMAN	oxidored-nitro domain-containing protein isoform	337					transport	basal plasma membrane				ovary(2)|central_nervous_system(1)|pancreas(1)	4						ATAACTCTTCTGGCCTGGTTA	0.453													62	116					0	0	0.003610	0	0
MACF1	23499	broad.mit.edu	37	1	39945528	39945529	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:39945528_39945529CC>TT	uc010oiu.1	+	62	17408_17409	c.17277_17278CC>TT	c.(17275-17280)TCCCAG>TCTTAG	p.Q5760*	MACF1_uc010ois.1_Nonsense_Mutation_p.Q5252*|MACF1_uc001cde.1_Nonsense_Mutation_p.Q129*|MACF1_uc001cdf.1_Nonsense_Mutation_p.Q135*|MACF1_uc001cdg.2_Nonsense_Mutation_p.Q43*|MACF1_uc001cdh.2_Nonsense_Mutation_p.Q43*	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7210	C-terminal tail (By similarity).				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AGGGAGCATCCCAGGGAATGAC	0.49													13	26					0	0	0.004672	0	0
KIAA0467	23334	broad.mit.edu	37	1	43903269	43903269	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:43903269C>T	uc001cjk.1	+	30	4059	c.3597C>T	c.(3595-3597)CTC>CTT	p.L1199L		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2098						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTCCCAGGCTCCTAGAGACAT	0.572													5	13					0	0	0.000602	0	0
IPO13	9670	broad.mit.edu	37	1	44422550	44422550	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:44422550C>T	uc001ckx.2	+	5	1968	c.1173C>T	c.(1171-1173)TTC>TTT	p.F391F		NM_014652	NP_055467	O94829	IPO13_HUMAN	importin 13	391	HEAT 6.				protein import into nucleus	cytoplasm|nucleus	protein binding|protein transporter activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0821)				CAGTCTACTTCCAGCTGGTGG	0.507													21	33					0	0	0.001216	0	0
PTCH2	8643	broad.mit.edu	37	1	45293690	45293690	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:45293690G>A	uc010olf.1	-	14	1895	c.1883C>T	c.(1882-1884)TCT>TTT	p.S628F	PTCH2_uc010olg.1_Missense_Mutation_p.S326F	NM_003738	NP_003729	Q9Y6C5	PTC2_HUMAN	patched 2	628	Cytoplasmic (Potential).				protein complex assembly|spermatogenesis	integral to plasma membrane	hedgehog receptor activity			lung(6)|breast(6)|central_nervous_system(3)|skin(2)|ovary(1)	18	Acute lymphoblastic leukemia(166;0.155)					CAGTGGGTCAGAAGGTGGGGG	0.622									Basal_Cell_Nevus_syndrome				24	26					0	0	0.002299	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47325393	47325393	+	RNA	SNP	C	T	T	rs61741514	by1000genomes	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:47325393C>T	uc001cqo.1	-	9		c.1175G>A				NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TGTTTACTACCGGTGCGTAGA	0.473													13	53					0	0	0.001368	0	0
CYP4A11	1579	broad.mit.edu	37	1	47400739	47400739	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:47400739G>A	uc001cqp.3	-	6	774	c.723C>T	c.(721-723)ACC>ACT	p.T241T	CYP4A11_uc001cqq.2_Silent_p.T241T|CYP4A11_uc010omm.1_Intron	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	241					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	GGCTGTAGATGGTGTCATTCT	0.537													26	60					0	0	0.003954	0	0
OMA1	115209	broad.mit.edu	37	1	58946769	58946769	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:58946769C>T	uc001cyy.2	-	9	1531	c.1443G>A	c.(1441-1443)ACG>ACA	p.T481T	DAB1_uc001cyt.1_Intron|OMA1_uc001cyx.1_Intron	NM_145243	NP_660286	Q96E52	OMA1_HUMAN	OMA1 homolog, zinc metallopeptidase precursor	481					proteolysis	integral to membrane|mitochondrial membrane	metal ion binding|metalloendopeptidase activity			large_intestine(1)	1	all_cancers(7;6.54e-05)					GAAAATGCTTCGTGCTGAGTT	0.333													25	30					0	0	0.003954	0	0
CYP2J2	1573	broad.mit.edu	37	1	60377919	60377919	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:60377919C>T	uc001czq.2	-	3	443	c.438G>A	c.(436-438)AGG>AGA	p.R146R		NM_000775	NP_000766	P51589	CP2J2_HUMAN	cytochrome P450, family 2, subfamily J,	146					epoxygenase P450 pathway|linoleic acid metabolic process|regulation of heart contraction|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	arachidonic acid 11,12-epoxygenase activity|arachidonic acid 14,15-epoxygenase activity|aromatase activity|electron carrier activity|heme binding|linoleic acid epoxygenase activity			ovary(1)	1	all_cancers(7;0.000396)					AACCAAAGTTCCTTAGTGCTG	0.438													21	57					0	0	0.001523	0	0
EFCAB7	84455	broad.mit.edu	37	1	64038153	64038153	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:64038153G>A	uc001dbf.2	+	14	2150	c.1856G>A	c.(1855-1857)TGG>TAG	p.W619*		NM_032437	NP_115813	A8K855	EFCB7_HUMAN	EF-hand calcium binding domain 7	619							calcium ion binding				0						CGACAAGAATGGATATATTAT	0.239													8	24					0	0	0.003080	0	0
JAK1	3716	broad.mit.edu	37	1	65301108	65301109	+	Silent	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:65301108_65301109GG>AA	uc001dbu.1	-	24	3588_3589	c.3339_3340CC>TT	c.(3337-3342)CGCCTG>CGTTTG	p.1113_1114RL>RL	JAK1_uc009wam.1_Silent_p.1101_1102RL>RL|JAK1_uc009wal.1_Silent_p.290_291RL>RL	NM_002227	NP_002218	P23458	JAK1_HUMAN	janus kinase 1	1113_1114	Protein kinase 2.				interferon-gamma-mediated signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to antibiotic|type I interferon-mediated signaling pathway	cytoskeleton|cytosol|endomembrane system|membrane|nucleus	ATP binding|growth hormone receptor binding|non-membrane spanning protein tyrosine kinase activity			haematopoietic_and_lymphoid_tissue(34)|prostate(7)|soft_tissue(6)|lung(4)|breast(3)|central_nervous_system(2)|liver(2)|large_intestine(1)|stomach(1)|ovary(1)	61				BRCA - Breast invasive adenocarcinoma(111;0.0485)		GGGCACGGCAGGCGTTTTCCTT	0.421			Mis		ALL								19	67					0	0	0.004672	0	0
LRRC7	57554	broad.mit.edu	37	1	70452014	70452014	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:70452014C>T	uc001dep.2	+	8	792	c.762C>T	c.(760-762)GCC>GCT	p.A254A	LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	254	LRR 11.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						GATGTGAAGCCCTTGAGGACC	0.338													11	12					0	0	0.000978	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74506976	74506976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:74506976C>T	uc001dfy.3	-	7	1831	c.1639G>A	c.(1639-1641)GAG>AAG	p.E547K	LRRIQ3_uc001dfz.3_Intron	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	547										ovary(2)	2						AGGCTTTTCTCTTTTAGGACA	0.308													34	46					0	0	0.002836	0	0
TNNI3K	51086	broad.mit.edu	37	1	74834741	74834741	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:74834741C>T	uc001dgf.1	+	14	1408	c.1357C>T	c.(1357-1359)CCT>TCT	p.P453S	TNNI3K_uc001dgc.1_Missense_Mutation_p.P554S|TNNI3K_uc001dgd.2_Missense_Mutation_p.P554S|TNNI3K_uc001dge.1_Missense_Mutation_p.P554S	NM_015978	NP_057062	Q59H18	TNI3K_HUMAN	TNNI3 interacting kinase isoform b	453						cytoplasm|nucleus	ATP binding|metal ion binding|protein C-terminus binding|protein serine/threonine kinase activity|troponin I binding			large_intestine(4)|lung(3)|ovary(2)|upper_aerodigestive_tract(1)	10						AGCTGGATTGCCTTCACATTT	0.353													7	23					0	0	0.003080	0	0
C1orf173	127254	broad.mit.edu	37	1	75101972	75101972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:75101972G>A	uc001dgg.2	-	6	814	c.595C>T	c.(595-597)CCC>TCC	p.P199S	C1orf173_uc001dgi.3_5'Flank	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	199										ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						ACCCCAATGGGAAACAGAGCT	0.313													29	42					0	0	0.005443	0	0
SLC44A5	204962	broad.mit.edu	37	1	75679471	75679471	+	Silent	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:75679471C>G	uc001dgu.2	-	22	2025	c.1881G>C	c.(1879-1881)CTG>CTC	p.L627L	SLC44A5_uc001dgt.2_Silent_p.L627L|SLC44A5_uc001dgs.2_Silent_p.L585L|SLC44A5_uc001dgr.2_Silent_p.L585L|SLC44A5_uc010oqz.1_Silent_p.L666L|SLC44A5_uc010ora.1_Silent_p.L621L|SLC44A5_uc010orb.1_Silent_p.L497L	NM_152697	NP_689910	Q8NCS7	CTL5_HUMAN	solute carrier family 44, member 5 isoform A	627	Helical; (Potential).					integral to membrane|plasma membrane	choline transmembrane transporter activity			ovary(2)|skin(2)	4						ATAGGAAGGCCAGAACACCTA	0.348													28	53					0	0	0.007291	0	0
MSH4	4438	broad.mit.edu	37	1	76262711	76262711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:76262711C>T	uc001dhd.1	+	1	82	c.41C>T	c.(40-42)CCG>CTG	p.P14L		NM_002440	NP_002431	O15457	MSH4_HUMAN	mutS homolog 4	14					chiasma assembly|homologous chromosome segregation|mismatch repair|reciprocal meiotic recombination	synaptonemal complex	ATP binding|DNA-dependent ATPase activity|mismatched DNA binding			lung(3)|ovary(2)	5						CCTTCTGCCCCGGCGGTTTCC	0.617								MMR					13	15					0	0	0.001855	0	0
SYDE2	84144	broad.mit.edu	37	1	85624759	85624759	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:85624759G>C	uc009wcm.2	-	7	3308	c.3259C>G	c.(3259-3261)CGT>GGT	p.R1087G		NM_032184	NP_115560	Q5VT97	SYDE2_HUMAN	synapse defective 1, Rho GTPase, homolog 2	1087					activation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	Rho GTPase activator activity			ovary(1)|central_nervous_system(1)	2				all cancers(265;0.0126)|Epithelial(280;0.0336)		CCTGCATAACGATTGCTAAGT	0.388													50	89					0	0	0.003610	0	0
HFM1	164045	broad.mit.edu	37	1	91845776	91845776	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:91845776C>T	uc001doa.3	-	8	991	c.891G>A	c.(889-891)AGG>AGA	p.R297R	HFM1_uc010osu.1_5'UTR|HFM1_uc010osv.1_Intron|HFM1_uc001doc.1_Silent_p.R297R	NM_001017975	NP_001017975	A2PYH4	HFM1_HUMAN	HFM1 protein	297	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding				0		all_lung(203;0.00961)|Lung NSC(277;0.0351)		all cancers(265;0.000481)|Epithelial(280;0.00863)|OV - Ovarian serous cystadenocarcinoma(397;0.126)|KIRC - Kidney renal clear cell carcinoma(1967;0.171)		TCACAAAATTCCTATCTGTGT	0.299													24	58					0	0	0.003954	0	0
FNBP1L	54874	broad.mit.edu	37	1	94012481	94012481	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:94012481G>A	uc001dpw.2	+	11	1183	c.1183G>A	c.(1183-1185)GAG>AAG	p.E395K	FNBP1L_uc001dpv.2_Missense_Mutation_p.E395K|FNBP1L_uc010otk.1_Missense_Mutation_p.E273K|FNBP1L_uc010otl.1_Missense_Mutation_p.E23K	NM_001024948	NP_001020119	Q5T0N5	FBP1L_HUMAN	formin binding protein 1-like isoform 1	453	REM.|Interaction with CDC42.				endocytosis	cell cortex|cytoplasmic membrane-bounded vesicle|cytoskeleton|plasma membrane	lipid binding				0		all_lung(203;0.00206)|Lung NSC(277;0.00902)|Melanoma(281;0.155)		all cancers(265;0.00666)|GBM - Glioblastoma multiforme(16;0.0378)|Epithelial(280;0.111)		TAAATTAGCAGAGACCATGAA	0.358													10	10					0	0	0.001368	0	0
VCAM1	7412	broad.mit.edu	37	1	101194910	101194910	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:101194910G>A	uc001dti.2	+	5	1296	c.1176G>A	c.(1174-1176)CTG>CTA	p.L392L	VCAM1_uc001dtj.2_Intron|VCAM1_uc010ouj.1_Silent_p.L330L	NM_001078	NP_001069	P19320	VCAM1_HUMAN	vascular cell adhesion molecule 1 isoform a	392	Ig-like C2-type 4.|Extracellular (Potential).				heterophilic cell-cell adhesion|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|leukocyte tethering or rolling|membrane to membrane docking|positive regulation of T cell proliferation|regulation of immune response	alpha9-beta1 integrin-vascular cell adhesion molecule-1 complex|apical part of cell|external side of plasma membrane|extracellular space|filopodium|integral to membrane|microvillus|podosome	cell adhesion molecule binding|integrin binding			central_nervous_system(1)	1		all_epithelial(167;3.83e-06)|all_lung(203;0.000485)|Lung NSC(277;0.0011)		Epithelial(280;0.0227)|all cancers(265;0.0276)|COAD - Colon adenocarcinoma(174;0.149)|Colorectal(144;0.169)|Lung(183;0.196)	Carvedilol(DB01136)	ATAAGAAACTGGAAAAGGGAA	0.423													25	59					0	0	0.007291	0	0
OLFM3	118427	broad.mit.edu	37	1	102312501	102312501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:102312501G>A	uc001duf.2	-	1	100	c.29C>T	c.(28-30)GCT>GTT	p.A10V	OLFM3_uc001dug.2_Intron|OLFM3_uc001duh.2_Intron|OLFM3_uc001dui.2_Intron|OLFM3_uc001duj.2_Intron|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	10						extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		ACTAAGCACAGCGCCAAGCTT	0.537													18	33					0	0	0.007413	0	0
COL11A1	1301	broad.mit.edu	37	1	103412448	103412449	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:103412448_103412449CC>TT	uc001dul.2	-	42	3550_3551	c.3232_3233GG>AA	c.(3232-3234)GGA>AAA	p.G1078K	COL11A1_uc001duk.2_Missense_Mutation_p.G274K|COL11A1_uc001dum.2_Missense_Mutation_p.G1090K|COL11A1_uc001dun.2_Missense_Mutation_p.G1039K|COL11A1_uc009weh.2_Missense_Mutation_p.G962K	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	1078	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		ACCCTGAGGTCCCGGGCGCCCT	0.475													6	22					0	0	0.004672	0	0
GPSM2	29899	broad.mit.edu	37	1	109472379	109472379	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:109472379G>A	uc010ovc.1	+	15	2368	c.1872G>A	c.(1870-1872)CCG>CCA	p.P624P	AKNAD1_uc010ovb.1_Intron|GPSM2_uc010ovd.1_Silent_p.P624P|GPSM2_uc010ove.1_Silent_p.P624P|CLCC1_uc001dwe.1_3'UTR|CLCC1_uc001dwf.1_3'UTR|CLCC1_uc001dwg.1_3'UTR	NM_013296	NP_037428	P81274	GPSM2_HUMAN	LGN protein	624					G-protein coupled receptor protein signaling pathway	cell cortex|nucleus	GTPase activator activity|identical protein binding			central_nervous_system(1)	1		all_epithelial(167;7.64e-05)|all_lung(203;0.000321)|Lung NSC(277;0.000626)		Colorectal(144;0.0353)|Lung(183;0.0984)|COAD - Colon adenocarcinoma(174;0.129)|Epithelial(280;0.175)|all cancers(265;0.209)		CAAAGGGTCCGACAGTACCAG	0.413													106	161					0	0	0.003610	0	0
SORT1	6272	broad.mit.edu	37	1	109869750	109869750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:109869750G>A	uc001dxm.1	-	13	1556	c.1507C>T	c.(1507-1509)CCA>TCA	p.P503S	SORT1_uc010ovi.1_Missense_Mutation_p.P366S	NM_002959	NP_002950	Q99523	SORT_HUMAN	sortilin 1 preproprotein	503	Extracellular (Potential).				endocytosis|endosome to lysosome transport|endosome transport via multivesicular body sorting pathway|glucose import|Golgi to endosome transport|induction of apoptosis by extracellular signals|myotube differentiation|negative regulation of apoptosis|negative regulation of lipoprotein lipase activity|neuropeptide signaling pathway|ossification|plasma membrane to endosome transport|regulation of gene expression|response to insulin stimulus|vesicle organization	cell surface|coated pit|early endosome|endoplasmic reticulum membrane|endosome membrane|Golgi cisterna membrane|integral to membrane|lysosomal membrane|microsome|nuclear membrane|perinuclear region of cytoplasm|plasma membrane	enzyme binding|nerve growth factor binding|nerve growth factor receptor activity|neurotensin receptor activity, non-G-protein coupled			ovary(1)	1		all_epithelial(167;4.69e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0529)|Colorectal(144;0.142)|Epithelial(280;0.145)|Kidney(133;0.169)|all cancers(265;0.184)		TACACATCTGGAACCATCACT	0.478													91	191					0	0	0.003610	0	0
AMIGO1	57463	broad.mit.edu	37	1	110050284	110050284	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:110050284G>A	uc001dxx.3	-	2	1633	c.1251C>T	c.(1249-1251)TCC>TCT	p.S417S		NM_020703	NP_065754	Q86WK6	AMGO1_HUMAN	AMIGO protein precursor	417	Cytoplasmic (Potential).				axonal fasciculation|heterophilic cell-cell adhesion|homophilic cell adhesion|myelination|positive regulation of axonogenesis	axon|integral to membrane				ovary(1)|breast(1)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Colorectal(144;0.0129)|Lung(183;0.0182)|Epithelial(280;0.046)|all cancers(265;0.0492)|READ - Rectum adenocarcinoma(129;0.0689)|LUSC - Lung squamous cell carcinoma(189;0.227)		TACTAAGCATGGAAGAGCTGA	0.572													13	20					0	0	0.001368	0	0
EPS8L3	79574	broad.mit.edu	37	1	110299788	110299788	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:110299788C>T	uc001dyr.1	-	12	1115	c.970_splice	c.e12-1	p.I324_splice	EPS8L3_uc001dys.1_Splice_Site_p.I324_splice|EPS8L3_uc001dyq.1_Splice_Site_p.I325_splice|EPS8L3_uc009wfm.1_Splice_Site_p.I291_splice|EPS8L3_uc009wfn.1_Splice_Site_p.I299_splice|EPS8L3_uc009wfo.1_Splice_Site_p.I271_splice	NM_133181	NP_573444	Q8TE67	ES8L3_HUMAN	epidermal growth factor receptor pathway							cytoplasm	protein binding			ovary(2)|skin(1)	3		all_epithelial(167;1.95e-05)|all_lung(203;0.000135)|Lung NSC(277;0.000269)		Lung(183;0.0245)|Colorectal(144;0.0365)|all cancers(265;0.103)|Epithelial(280;0.109)|LUSC - Lung squamous cell carcinoma(189;0.137)|COAD - Colon adenocarcinoma(174;0.141)		TGGCCAGGATCTAGGGGAGAG	0.592													5	10					0	0	0.000602	0	0
SLC6A17	388662	broad.mit.edu	37	1	110738249	110738249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:110738249G>A	uc009wfq.2	+	10	1995	c.1534G>A	c.(1534-1536)GTC>ATC	p.V512I		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	512	Extracellular (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity	p.F511_R514del(1)		ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		GCTGTTGTTCGTCCAGCGCTC	0.602													17	31					0	0	0.004990	0	0
KCNA2	3737	broad.mit.edu	37	1	111147292	111147292	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:111147292T>C	uc001dzu.2	-	2	609	c.113A>G	c.(112-114)AAC>AGC	p.N38S	KCNA2_uc009wfv.1_Missense_Mutation_p.N38S|KCNA2_uc009wfw.2_Missense_Mutation_p.N38S	NM_004974	NP_004965	P16389	KCNA2_HUMAN	potassium voltage-gated channel, shaker-related	38						juxtaparanode region of axon|voltage-gated potassium channel complex	delayed rectifier potassium channel activity			ovary(1)	1		all_cancers(81;5.55e-06)|all_epithelial(167;1.87e-05)|all_lung(203;0.000199)|Lung NSC(277;0.000398)		Colorectal(144;0.00878)|Lung(183;0.0234)|all cancers(265;0.0492)|Epithelial(280;0.0529)|COAD - Colon adenocarcinoma(174;0.131)|LUSC - Lung squamous cell carcinoma(189;0.133)|READ - Rectum adenocarcinoma(129;0.191)		CCCTGAGATGTTGATCACCAC	0.582													103	68					0	0	0.003610	0	0
CHIA	27159	broad.mit.edu	37	1	111854318	111854318	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:111854318C>T	uc001eas.2	+	3	136	c.33C>T	c.(31-33)GTC>GTT	p.V11V	CHIA_uc001ear.2_Intron|CHIA_uc001eaq.2_5'UTR|CHIA_uc009wgc.2_5'UTR|CHIA_uc001eat.2_Intron|CHIA_uc001eav.2_5'UTR|CHIA_uc001eau.2_5'UTR|CHIA_uc009wgd.2_5'UTR	NM_201653	NP_970615	Q9BZP6	CHIA_HUMAN	acidic chitinase isoform c	11					apoptosis|cell wall chitin metabolic process|chitin catabolic process|digestion|immune response|positive regulation of chemokine secretion|production of molecular mediator involved in inflammatory response|response to acid|response to fungus	cytoplasm|extracellular space	cation binding|chitin binding|chitinase activity|kinase binding|lysozyme activity|sugar binding			ovary(1)	1		all_cancers(81;3.23e-05)|all_epithelial(167;1.2e-05)|all_lung(203;0.000154)|Lung NSC(277;0.000304)		Colorectal(144;0.0115)|Lung(183;0.0292)|COAD - Colon adenocarcinoma(174;0.0314)|all cancers(265;0.0477)|Epithelial(280;0.0918)|LUSC - Lung squamous cell carcinoma(189;0.154)		CAGGTCTTGTCCTTATACTGA	0.383													36	78					0	0	0.007835	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112998569	112998569	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:112998569C>T	uc001ebx.2	+	6	683	c.455C>T	c.(454-456)TCC>TTC	p.S152F	CTTNBP2NL_uc001ebz.2_5'Flank	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	152	Potential.					actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTGAAAAATCCCAAGTGAAA	0.418													8	20					0	0	0.003080	0	0
MAGI3	260425	broad.mit.edu	37	1	114216003	114216003	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:114216003C>T	uc001edk.2	+	19	3286	c.3105C>T	c.(3103-3105)CTC>CTT	p.L1035L	MAGI3_uc001edh.3_Silent_p.L1060L|MAGI3_uc001edi.3_Silent_p.L1035L|MAGI3_uc010owm.1_Silent_p.L1060L|MAGI3_uc001edj.2_Silent_p.L756L	NM_001142782	NP_001136254	Q5TCQ9	MAGI3_HUMAN	membrane-associated guanylate kinase-related  3	1060	PDZ 6.				apoptosis|interspecies interaction between organisms|intracellular signal transduction	nucleus|tight junction	ATP binding|guanylate kinase activity|protein binding			lung(3)|ovary(2)|central_nervous_system(1)	6	Lung SC(450;0.184)	all_cancers(81;2.34e-09)|all_epithelial(167;7.41e-09)|all_lung(203;7.13e-06)|Lung NSC(69;1.2e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GATTCAGCCTCCGAGGGGGGA	0.493													31	126					0	0	0.002836	0	0
NRAS	4893	broad.mit.edu	37	1	115258747	115258747	+	Missense_Mutation	SNP	C	G	G	rs121913237		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:115258747C>G	uc009wgu.2	-	2	289	c.35G>C	c.(34-36)GGT>GCT	p.G12A		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	12	GTP.		G -> C (in leukemia).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.G12D(333)|p.G12S(118)|p.G12C(71)|p.G12V(54)|p.G12A(36)|p.G12R(16)|p.G12G(4)|p.G12N(1)|p.G12T(1)|p.G12P(1)|p.G12Y(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CCCAACACCACCTGCTCCAAC	0.493	G12D(HEC151_ENDOMETRIUM)|G12D(KE37_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(P12ICHIKAWA_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(TYKNU_OVARY)|G12D(697_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(MOLT13_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|G12D(THP1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			45	58					0	0	0.003610	0	0
SPAG17	200162	broad.mit.edu	37	1	118558675	118558676	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:118558675_118558676TC>AT	uc001ehk.2	-	29	4267_4268	c.4199_4200GA>AT	c.(4198-4200)GGA>GAT	p.G1400D		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	1400						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CGATCCGATTTCCTTCAGGTGT	0.475													84	36					0	0	0.004672	0	0
HAO2	51179	broad.mit.edu	37	1	119925619	119925619	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:119925619C>T	uc001ehq.1	+	4	565	c.213C>T	c.(211-213)GCC>GCT	p.A71A	HAO2_uc001ehr.1_Silent_p.A71A	NM_001005783	NP_001005783	Q9NYQ3	HAOX2_HUMAN	hydroxyacid oxidase 2	71	FMN hydroxy acid dehydrogenase.				fatty acid alpha-oxidation	peroxisome	(S)-2-hydroxy-acid oxidase activity			ovary(2)|skin(2)	4	all_neural(166;0.187)	all_lung(203;1.06e-06)|Lung NSC(69;7.5e-06)|all_epithelial(167;0.000284)		Lung(183;0.0155)|LUSC - Lung squamous cell carcinoma(189;0.0856)		AGATCAGTGCCCCTATTTGTA	0.557													17	28					0	0	0.004990	0	0
REG4	83998	broad.mit.edu	37	1	120337285	120337285	+	Missense_Mutation	SNP	C	T	T	rs150927973		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:120337285C>T	uc001eig.2	-	7	873	c.433G>A	c.(433-435)GAA>AAA	p.E145K	REG4_uc001eif.2_Missense_Mutation_p.E145K	NM_001159352	NP_001152824	Q9BYZ8	REG4_HUMAN	regenerating islet-derived family, member 4	145	C-type lectin.					extracellular region	sugar binding			ovary(1)	1	all_cancers(5;4.81e-10)|all_epithelial(5;7.98e-11)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;8.1e-07)|Lung NSC(69;5.89e-06)|all_epithelial(167;0.000959)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0588)		TTGTTGCATTCGTTGCTGCTC	0.423													503	247					0	0	0.003610	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144864142	144864142	+	Missense_Mutation	SNP	C	T	T	rs139404785		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:144864142C>T	uc001elw.3	-	36	6244	c.5953G>A	c.(5953-5955)GAC>AAC	p.D1985N	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.D1879N|PDE4DIP_uc001elv.3_Missense_Mutation_p.D992N|PDE4DIP_uc001ema.2_Missense_Mutation_p.D172N	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1985	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TACCTGGAGTCGTTTTCCTGG	0.438			T	PDGFRB	MPD								66	523					0	0	0.003610	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144917539	144917539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:144917539C>T	uc001elw.3	-	12	1856	c.1565G>A	c.(1564-1566)AGA>AAA	p.R522K	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R588K|PDE4DIP_uc001emc.1_Missense_Mutation_p.R522K|PDE4DIP_uc001emd.1_Missense_Mutation_p.R522K|PDE4DIP_uc001emb.1_Missense_Mutation_p.R685K|PDE4DIP_uc001eme.1_Missense_Mutation_p.R51K|PDE4DIP_uc001emf.1_Missense_Mutation_p.R309K	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	522	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ATCGCGCAGTCTCTCTAAGTC	0.468			T	PDGFRB	MPD								74	499					0	0	0.003610	0	0
PDE4DIP	9659	broad.mit.edu	37	1	145015920	145015920	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:145015920G>A	uc001elx.3	-	3	503	c.168C>T	c.(166-168)TCC>TCT	p.S56S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elm.3_5'UTR|PDE4DIP_uc001eln.3_Silent_p.S56S|PDE4DIP_uc001elo.2_Silent_p.S127S|PDE4DIP_uc001emh.2_Silent_p.S127S|uc001emj.2_Intron	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	Error:Variant_position_missing_in_Q5VU43_after_alignment					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		ATGCTCTCAAGGAATATGTCT	0.453			T	PDGFRB	MPD								41	442					0	0	0.002522	0	0
HFE2	148738	broad.mit.edu	37	1	145416753	145416753	+	Silent	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:145416753A>G	uc001eni.2	+	4	1423	c.1098A>G	c.(1096-1098)TTA>TTG	p.L366L	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Silent_p.L140L|HFE2_uc001enk.2_Silent_p.L253L|HFE2_uc001enl.2_Silent_p.L140L	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	366					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					TTGATGTTTTAATTTCTGGTG	0.517													14	20					0	0	0.002450	0	0
MTMR11	10903	broad.mit.edu	37	1	149905813	149905813	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:149905813G>A	uc001etl.3	-	8	957	c.706C>T	c.(706-708)CCT>TCT	p.P236S	MTMR11_uc001etm.1_Missense_Mutation_p.P164S|MTMR11_uc010pbm.1_Missense_Mutation_p.P208S|MTMR11_uc010pbn.1_Missense_Mutation_p.P78S	NM_001145862	NP_001139334	A4FU01	MTMRB_HUMAN	myotubularin related protein 11 isoform a	236	Myotubularin phosphatase.						phosphatase activity			central_nervous_system(1)	1	Breast(34;0.0009)|Ovarian(49;0.0377)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)			ATTCGGTTAGGGACCCAGAAG	0.478													32	59					0	0	0.003755	0	0
GOLPH3L	55204	broad.mit.edu	37	1	150620962	150620962	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:150620962G>A	uc001evj.2	-	5	910	c.693C>T	c.(691-693)TCC>TCT	p.S231S	GOLPH3L_uc010pci.1_Silent_p.S187S	NM_018178	NP_060648	Q9H4A5	GLP3L_HUMAN	Golgi phosphoprotein 3-like	231						Golgi cisterna membrane				ovary(1)	1	all_cancers(9;3.09e-52)|all_epithelial(9;4.47e-43)|all_lung(15;1.09e-34)|Lung NSC(24;4.04e-31)|Breast(34;0.000615)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0241)|Epithelial(6;1.2e-23)|all cancers(9;4.81e-23)|OV - Ovarian serous cystadenocarcinoma(6;1.93e-15)|BRCA - Breast invasive adenocarcinoma(12;0.000479)|LUSC - Lung squamous cell carcinoma(543;0.171)			GCACATCAGAGGAGTGGGCTA	0.478													28	56					0	0	0.002836	0	0
GABPB2	126626	broad.mit.edu	37	1	151090593	151090593	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:151090593C>T	uc001ewr.2	+	9	1539	c.1208C>T	c.(1207-1209)ACC>ATC	p.T403I	GABPB2_uc001ews.2_Missense_Mutation_p.T363I|GABPB2_uc001ewt.2_3'UTR	NM_144618	NP_653219	Q8TAK5	GABP2_HUMAN	GA repeat binding protein, beta 2	403					positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	protein heterodimerization activity|transcription regulatory region DNA binding				0				all cancers(107;7.17e-05)|GBM - Glioblastoma multiforme(94;0.000662)		GTTGATTTCACCATGGTTGAA	0.522													21	21					0	0	0.001882	0	0
TDRKH	11022	broad.mit.edu	37	1	151747916	151747916	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:151747916C>T	uc009wnb.1	-	10	1568	c.1386G>A	c.(1384-1386)GGG>GGA	p.G462G	TDRKH_uc001eyy.2_Silent_p.G238G|TDRKH_uc001ezb.3_Silent_p.G458G|TDRKH_uc001ezc.3_Silent_p.G417G|TDRKH_uc001eza.3_Silent_p.G462G|TDRKH_uc001ezd.3_Silent_p.G462G|TDRKH_uc010pdn.1_Silent_p.G238G	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	462							RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			AAGTTGAGATCCCAGTCTGGA	0.443													21	54					0	0	0.002780	0	0
TDRKH	11022	broad.mit.edu	37	1	151748675	151748675	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:151748675G>A	uc009wnb.1	-	8	1296	c.1114C>T	c.(1114-1116)CGA>TGA	p.R372*	TDRKH_uc001eyy.2_Nonsense_Mutation_p.R148*|TDRKH_uc001ezb.3_Nonsense_Mutation_p.R368*|TDRKH_uc001ezc.3_Nonsense_Mutation_p.R327*|TDRKH_uc001eza.3_Nonsense_Mutation_p.R372*|TDRKH_uc001ezd.3_Nonsense_Mutation_p.R372*|TDRKH_uc010pdn.1_Nonsense_Mutation_p.R148*	NM_006862	NP_006853	Q9Y2W6	TDRKH_HUMAN	tudor and KH domain containing isoform a	372	Tudor.						RNA binding			ovary(1)|pancreas(1)	2	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			ACCCGGGCTCGATACCAGGAA	0.507													23	41					0	0	0.003954	0	0
HRNR	388697	broad.mit.edu	37	1	152188153	152188153	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:152188153G>A	uc001ezt.1	-	3	6028	c.5952C>T	c.(5950-5952)TCC>TCT	p.S1984S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1984	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AAGAGTGACCGGAGCCAGACT	0.592													17	464					0	0	0.003330	0	0
HRNR	388697	broad.mit.edu	37	1	152193255	152193255	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:152193255C>T	uc001ezt.1	-	3	926	c.850G>A	c.(850-852)GGT>AGT	p.G284S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	284	3.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCATGCTGACCATAGCTGGAA	0.592													43	105					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152281609	152281609	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:152281609A>G	uc001ezu.1	-	3	5789	c.5753T>C	c.(5752-5754)GTT>GCT	p.V1918A		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1918	Ser-rich.|Filaggrin 11.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GTCCTGGCTAACACTGGATCC	0.567									Ichthyosis				55	125					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152284875	152284875	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:152284875G>A	uc001ezu.1	-	3	2523	c.2487C>T	c.(2485-2487)TCC>TCT	p.S829S	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	829	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGAGTGCCTGGAGTTGTCTC	0.567									Ichthyosis				63	135					0	0	0.003610	0	0
LELP1	149018	broad.mit.edu	37	1	153177279	153177279	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:153177279G>A	uc001fbl.2	+	2	206	c.96G>A	c.(94-96)CAG>CAA	p.Q32Q		NM_001010857	NP_001010857	Q5T871	LELP1_HUMAN	late cornified envelope-like proline-rich 1	32	Cys/Pro-rich.									ovary(1)	1	all_lung(78;3.51e-31)|Lung NSC(65;1.34e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCAAATGCCAGCCCAGCTGTT	0.498													24	38					0	0	0.003330	0	0
DENND4B	9909	broad.mit.edu	37	1	153906042	153906042	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:153906042G>A	uc001fdd.1	-	20	3648	c.3247C>T	c.(3247-3249)CCT>TCT	p.P1083S	uc001fdc.1_Intron	NM_014856	NP_055671	O75064	DEN4B_HUMAN	DENN/MADD domain containing 4B	1083										ovary(1)	1	all_lung(78;2.89e-32)|Lung NSC(65;2.27e-30)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.151)			GGCAGGTCAGGAGGCAGCTCA	0.711													6	21					0	0	0.001984	0	0
ADAR	103	broad.mit.edu	37	1	154574584	154574585	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:154574584_154574585GG>AA	uc001ffh.2	-	2	733_734	c.533_534CC>TT	c.(532-534)TCC>TTT	p.S178F	ADAR_uc001ffj.2_Missense_Mutation_p.S178F|ADAR_uc001ffi.2_Missense_Mutation_p.S178F|ADAR_uc001ffk.2_5'UTR|ADAR_uc001ffl.1_5'UTR	NM_001111	NP_001102	P55265	DSRAD_HUMAN	adenosine deaminase, RNA-specific isoform a	178	|DRADA 1.				adenosine to inosine editing|gene silencing by RNA|mRNA modification|mRNA processing|type I interferon-mediated signaling pathway	cytoplasm|nucleolus|nucleoplasm	DNA binding|double-stranded RNA adenosine deaminase activity|metal ion binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_lung(78;2.22e-29)|Lung NSC(65;3.66e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.0997)		LUSC - Lung squamous cell carcinoma(543;0.185)	Colorectal(1306;0.115)		TCTTTGCCAGGGAGTATAAAAC	0.515													42	95					0	0	0.004672	0	0
THBS3	7059	broad.mit.edu	37	1	155166889	155166889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:155166889C>T	uc001fix.2	-	21	2638	c.2615G>A	c.(2614-2616)CGG>CAG	p.R872Q	RAG1AP1_uc010pey.1_Intron|THBS3_uc009wqi.2_Missense_Mutation_p.R863Q|THBS3_uc001fiz.2_Missense_Mutation_p.R835Q|THBS3_uc001fiy.2_Missense_Mutation_p.R401Q|THBS3_uc010pfu.1_Missense_Mutation_p.R752Q	NM_007112	NP_009043	P49746	TSP3_HUMAN	thrombospondin 3 precursor	872	TSP C-terminal.				cell-matrix adhesion	extracellular region|perinuclear region of cytoplasm	calcium ion binding|heparin binding|structural molecule activity			breast(3)|ovary(2)	5	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;3.72e-10)|all cancers(21;1.19e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			GGTCTTGTCCCGCCAGCCCAC	0.622													24	31					0	0	0.003330	0	0
MEF2D	4209	broad.mit.edu	37	1	156446904	156446904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:156446904G>A	uc001fpc.2	-	7	1145	c.755C>T	c.(754-756)CCG>CTG	p.P252L	MEF2D_uc001fpb.2_Missense_Mutation_p.P252L|MEF2D_uc001fpd.2_Missense_Mutation_p.P252L|MEF2D_uc001fpe.1_Missense_Mutation_p.P252L|MEF2D_uc009wsa.2_RNA	NM_005920	NP_005911	Q14814	MEF2D_HUMAN	myocyte enhancer factor 2D	252	Poly-Pro.				apoptosis|muscle organ development|nervous system development|positive regulation of transcription from RNA polymerase II promoter	nucleus	activating transcription factor binding|histone deacetylase binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity			ovary(1)	1	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					AGGTGGGGGTGGAGACTTGGC	0.607													27	29					0	0	0.005443	0	0
PRCC	5546	broad.mit.edu	37	1	156752097	156752097	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:156752097C>T	uc001fqa.2	+	2	782	c.492C>T	c.(490-492)CCC>CCT	p.P164P	PRCC_uc001fqb.2_Silent_p.P164P	NM_005973	NP_005964	Q92733	PRCC_HUMAN	papillary renal cell carcinoma	164					cell cycle|mitotic cell cycle checkpoint	nucleus	protein binding		PRCC/TFE3(25)	kidney(25)|central_nervous_system(2)	27	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					AAGATGAACCCACAAAGAAGA	0.348			T	TFE3	papillary renal 								5	29					0	0	0.001984	0	0
FCRL5	83416	broad.mit.edu	37	1	157512802	157512802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:157512802C>T	uc001fqu.2	-	6	1128	c.970G>A	c.(970-972)GAG>AAG	p.E324K	FCRL5_uc009wsm.2_Missense_Mutation_p.E324K|FCRL5_uc010phv.1_Missense_Mutation_p.E324K|FCRL5_uc010phw.1_Missense_Mutation_p.E239K|FCRL5_uc001fqv.1_Missense_Mutation_p.E324K|FCRL5_uc010phx.1_Missense_Mutation_p.E75K	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	324	Extracellular (Potential).|Ig-like C2-type 3.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				GGGACACCCTCATGATAAAAC	0.498													23	44					0	0	0.001882	0	0
CD1B	910	broad.mit.edu	37	1	158299295	158299295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:158299295C>T	uc001frx.2	-	4	859	c.751G>A	c.(751-753)GGG>AGG	p.G251R	CD1B_uc001frw.2_Intron	NM_001764	NP_001755	P29016	CD1B_HUMAN	CD1B antigen precursor	251	Extracellular (Potential).|Ig-like.				antigen processing and presentation|immune response	endosome membrane|integral to membrane|lysosomal membrane|plasma membrane	protein binding			ovary(2)	2	all_hematologic(112;0.0378)					AGGATGTCCCCTAGCTGAGTG	0.607													21	42					0	0	0.002780	0	0
OR10K2	391107	broad.mit.edu	37	1	158390228	158390228	+	Silent	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:158390228T>G	uc010pii.1	-	1	429	c.429A>C	c.(427-429)GGA>GGC	p.G143G		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					CAGCCACTAGTCCCATACACA	0.488													4	41					0	0	0.000673	0	0
OR10Z1	128368	broad.mit.edu	37	1	158577044	158577044	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:158577044G>A	uc010pio.1	+	1	816	c.816G>A	c.(814-816)CAG>CAA	p.Q272Q		NM_001004478	NP_001004478	Q8NGY1	O10Z1_HUMAN	olfactory receptor, family 10, subfamily Z,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)|skin(1)	2	all_hematologic(112;0.0378)					AGAGAGATCAGCTTATTGCCA	0.468													72	114					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158612669	158612669	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:158612669C>T	uc001fst.1	-	32	4739	c.4540G>A	c.(4540-4542)GAA>AAA	p.E1514K		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1514	Spectrin 15.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CTGATCCATTCTTCCAGCTCC	0.453													38	75					0	0	0.002522	0	0
PVRL4	81607	broad.mit.edu	37	1	161047403	161047403	+	Silent	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:161047403T>G	uc001fxo.2	-	3	869	c.570A>C	c.(568-570)ACA>ACC	p.T190T	PVRL4_uc010pjy.1_5'Flank|PVRL4_uc010pjz.1_5'Flank	NM_030916	NP_112178	Q96NY8	PVRL4_HUMAN	poliovirus receptor-related 4 precursor	190	Ig-like C2-type 1.|Extracellular (Potential).				adherens junction organization|cell adhesion|cell junction assembly	adherens junction|extracellular region|integral to membrane				ovary(2)	2	all_cancers(52;8.9e-20)|Breast(13;0.00188)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00165)			GGCTGGACGTTGTGCCTTTGA	0.637													13	31					0	0	0.001855	0	0
HSPA6	3310	broad.mit.edu	37	1	161495847	161495847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:161495847C>T	uc001gap.2	+	2	2059	c.1399C>T	c.(1399-1401)CCT>TCT	p.P467S	HSPA6_uc001gaq.2_Missense_Mutation_p.P467S	NM_002155	NP_002146	P17066	HSP76_HUMAN	heat shock 70kDa protein 6 (HSP70B')	467					response to unfolded protein		ATP binding			skin(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			CAGTGGCATCCCTCCTGCCCC	0.567													26	31					0	0	0.005443	0	0
ATF6	22926	broad.mit.edu	37	1	161821621	161821621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:161821621C>T	uc001gbr.2	+	11	1496	c.1429C>T	c.(1429-1431)CTC>TTC	p.L477F	ATF6_uc001gbq.1_Missense_Mutation_p.L477F	NM_007348	NP_031374	P18850	ATF6A_HUMAN	activating transcription factor 6	477	Lumenal (Potential).				positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response|protein folding	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|nuclear envelope|nucleoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|skin(1)	3	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.00953)			AACAGAGTCTCTCAGGTGAGT	0.413													21	57					0	0	0.002299	0	0
MAEL	84944	broad.mit.edu	37	1	166959060	166959060	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:166959060G>A	uc001gdy.1	+	2	290	c.219G>A	c.(217-219)GAG>GAA	p.E73E	MAEL_uc001gdz.1_Intron|MAEL_uc009wvf.1_5'Flank	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	73	HMG box.				cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						GGCCCTCAGAGAAGCAGGTAA	0.403													8	35					0	0	0.003080	0	0
SFT2D2	375035	broad.mit.edu	37	1	168211762	168211762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:168211762C>T	uc001gfi.3	+	8	530	c.467C>T	c.(466-468)GCC>GTC	p.A156V	TBX19_uc001gfj.3_Intron	NM_199344	NP_955376	O95562	SFT2B_HUMAN	SFT2 domain containing 2	156	Cytoplasmic (Potential).				protein transport|vesicle-mediated transport	integral to membrane				skin(1)	1	all_hematologic(923;0.215)					AAGTGTTTTGCCGTGTGTCTT	0.433													34	58					0	0	0.004289	0	0
F5	2153	broad.mit.edu	37	1	169555578	169555578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:169555578G>A	uc001ggg.1	-	1	192	c.47C>T	c.(46-48)ACC>ATC	p.T16I	F5_uc010plr.1_RNA	NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	16					cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	TACCCAGCTGGTGCCCAAGAC	0.652													9	21					0	0	0.000978	0	0
SELE	6401	broad.mit.edu	37	1	169695926	169695926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:169695926G>A	uc001ggm.3	-	11	1824	c.1667C>T	c.(1666-1668)CCC>CTC	p.P556L	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	556	Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					AGCTACCAAGGGAATGTTGGA	0.473													8	12					0	0	0.003080	0	0
C1orf129	80133	broad.mit.edu	37	1	170941014	170941014	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:170941014G>A	uc001ghg.2	+	8	736	c.606G>A	c.(604-606)CGG>CGA	p.R202R	C1orf129_uc009wvy.2_Silent_p.R9R|C1orf129_uc010plz.1_Silent_p.R202R	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	202							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					ACATTGCACGGTGTCAGAACG	0.453													45	94					0	0	0.003610	0	0
C1orf129	80133	broad.mit.edu	37	1	170955851	170955851	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:170955851G>A	uc001ghg.2	+	10	1009	c.879G>A	c.(877-879)ATG>ATA	p.M293I	C1orf129_uc009wvy.2_Missense_Mutation_p.M100I|C1orf129_uc010plz.1_Missense_Mutation_p.M293I	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	293							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AGGTCACCATGGTAAGATACT	0.393													16	31					0	0	0.007413	0	0
C1orf129	80133	broad.mit.edu	37	1	170967484	170967484	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:170967484C>T	uc001ghg.2	+	15	1795	c.1665C>T	c.(1663-1665)TTC>TTT	p.F555F	C1orf129_uc009wvy.2_Silent_p.F362F|C1orf129_uc010plz.1_Intron	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	555							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AATCAAAATTCCAGTTTCTCG	0.383													16	24					0	0	0.006122	0	0
ANKRD45	339416	broad.mit.edu	37	1	173596232	173596233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:173596232_173596233CC>TT	uc001gja.1	-	4	623_624	c.562_563GG>AA	c.(562-564)GGA>AAA	p.G188K		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	204											0						TTTCCCTGATCCCTTTTCTGTG	0.356													15	52					0	0	0.004672	0	0
TNN	63923	broad.mit.edu	37	1	175106034	175106034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:175106034G>A	uc001gkl.1	+	17	3618	c.3505G>A	c.(3505-3507)GAA>AAA	p.E1169K		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1169	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		GACTGCCAATGAATCTGCCTA	0.468													7	25					0	0	0.003080	0	0
TNR	7143	broad.mit.edu	37	1	175328855	175328855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:175328855G>A	uc001gkp.1	-	13	2948	c.2867C>T	c.(2866-2868)CCT>CTT	p.P956L	TNR_uc009wwu.1_Missense_Mutation_p.P956L	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	956	Fibronectin type-III 8.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					CAGATCCACAGGGTTGTCCAT	0.473													12	26					0	0	0.001368	0	0
TNR	7143	broad.mit.edu	37	1	175355369	175355369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:175355369G>A	uc001gkp.1	-	6	1657	c.1576C>T	c.(1576-1578)CCC>TCC	p.P526S	TNR_uc009wwu.1_Missense_Mutation_p.P526S	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	526	Fibronectin type-III 3.				axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GCTCGAGGGGGAATCCACTCC	0.542													5	12					0	0	0.001168	0	0
TNR	7143	broad.mit.edu	37	1	175375790	175375790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:175375790G>A	uc001gkp.1	-	1	142	c.61C>T	c.(61-63)CTT>TTT	p.L21F	TNR_uc009wwu.1_Missense_Mutation_p.L21F|TNR_uc010pmz.1_Missense_Mutation_p.L21F	NM_003285	NP_003276	Q92752	TENR_HUMAN	tenascin R precursor	21					axon guidance|cell adhesion|signal transduction	proteinaceous extracellular matrix				pancreas(5)|ovary(4)|central_nervous_system(1)|skin(1)	11	Renal(580;0.146)					GAGCCCAGAAGGATCAGGTTG	0.552													26	60					0	0	0.003954	0	0
PAPPA2	60676	broad.mit.edu	37	1	176526076	176526076	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:176526076G>A	uc001gkz.2	+	2	1782	c.618G>A	c.(616-618)GCG>GCA	p.A206A	PAPPA2_uc001gky.1_Silent_p.A206A|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	206					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						AGAGGCGGGCGGAAGATGGGC	0.567													31	60					0	0	0.002445	0	0
FAM5B	57795	broad.mit.edu	37	1	177226424	177226424	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:177226424G>A	uc001glf.2	+	4	885	c.573G>A	c.(571-573)CTG>CTA	p.L191L	FAM5B_uc010pna.1_5'UTR|FAM5B_uc001glg.2_Silent_p.L86L	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	191						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CTGTGTCCCTGGAGACCCTGC	0.562													8	31					0	0	0.004482	0	0
CACNA1E	777	broad.mit.edu	37	1	181741226	181741226	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:181741226G>A	uc001gow.2	+	37	5163	c.4998G>A	c.(4996-4998)CAG>CAA	p.Q1666Q	CACNA1E_uc009wxs.2_Silent_p.Q1554Q|CACNA1E_uc001gox.1_Silent_p.Q892Q|CACNA1E_uc009wxt.2_Silent_p.Q892Q	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1666	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						AGGCCTGGCAGGAGATTATGC	0.557													14	26					0	0	0.001855	0	0
CACNA1E	777	broad.mit.edu	37	1	181767742	181767742	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:181767742C>T	uc001gow.2	+	47	6750	c.6585C>T	c.(6583-6585)GAC>GAT	p.D2195D	CACNA1E_uc009wxs.2_Silent_p.D2083D|CACNA1E_uc009wxt.2_Silent_p.D1464D	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	2238	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						TGCACGAAGACTCCCACGCCT	0.632													4	8					0	0	0.000248	0	0
HMCN1	83872	broad.mit.edu	37	1	186017936	186017936	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:186017936G>A	uc001grq.1	+	42	6771	c.6542G>A	c.(6541-6543)GGA>GAA	p.G2181E		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	2181	Ig-like C2-type 19.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AATGTTGCTGGAAAAACTGAA	0.353													14	36					0	0	0.006122	0	0
PTGS2	5743	broad.mit.edu	37	1	186648524	186648524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:186648524C>T	uc001gsb.2	-	2	236	c.99G>A	c.(97-99)ATG>ATA	p.M33I	PTGS2_uc009wyo.2_5'UTR	NM_000963	NP_000954	P35354	PGH2_HUMAN	prostaglandin-endoperoxide synthase 2 precursor	33	EGF-like.				cellular component movement|cyclooxygenase pathway|hormone biosynthetic process|positive regulation of brown fat cell differentiation|positive regulation of cell migration involved in sprouting angiogenesis|positive regulation of fever generation|positive regulation of fibroblast growth factor production|positive regulation of nitric oxide biosynthetic process|positive regulation of platelet-derived growth factor production|positive regulation of prostaglandin biosynthetic process|positive regulation of transforming growth factor-beta production|positive regulation vascular endothelial growth factor production|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|microsome|neuron projection|nucleus	enzyme binding|heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|central_nervous_system(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Carprofen(DB00821)|Celecoxib(DB00482)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Epoprostenol(DB01240)|Etodolac(DB00749)|Etoricoxib(DB01628)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ginseng(DB01404)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lenalidomide(DB00480)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Meloxicam(DB00814)|Mesalazine(DB00244)|Nabumetone(DB00461)|Naproxen(DB00788)|Oxaprozin(DB00991)|Phenylbutazone(DB00812)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Thalidomide(DB01041)|Tiaprofenic acid(DB01600)|Tolmetin(DB00500)|Valdecoxib(DB00580)	ATCCCACACTCATACATACAC	0.408													16	23					0	0	0.004007	0	0
FAM5C	339479	broad.mit.edu	37	1	190067482	190067482	+	Missense_Mutation	SNP	C	T	T	rs149389696		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:190067482C>T	uc001gse.1	-	8	2199	c.1967G>A	c.(1966-1968)CGG>CAG	p.R656Q	FAM5C_uc010pot.1_Missense_Mutation_p.R554Q	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	656						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					GCCCAGGTTCCGGGAAGGGTC	0.448													30	55					0	0	0.001786	0	0
CFH	3075	broad.mit.edu	37	1	196659222	196659222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:196659222G>A	uc001gtj.3	+	9	1429	c.1189G>A	c.(1189-1191)GGA>AGA	p.G397R	CFH_uc001gti.3_Missense_Mutation_p.G397R|CFH_uc009wyw.2_Missense_Mutation_p.G372R|CFH_uc009wyx.2_Missense_Mutation_p.G333R	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	397	Sushi 7.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						TTTGGAAAATGGATATAATCA	0.328													4	14					0	0	0.000248	0	0
CFH	3075	broad.mit.edu	37	1	196716296	196716296	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:196716296G>A	uc001gtj.3	+	22	3789	c.3549G>A	c.(3547-3549)TGG>TGA	p.W1183*		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1183	Sushi 20.		W -> R (in AHUS1).|W -> L (in AHUS1).|W -> C (in AHUS1).		complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						CATTAAGGTGGACAGCCAAAC	0.348													30	39					0	0	0.002836	0	0
CFHR4	10877	broad.mit.edu	37	1	196883701	196883701	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:196883701G>A	uc001gto.2	+	4	585	c.516G>A	c.(514-516)TTG>TTA	p.L172L	CFHR4_uc009wyy.2_Silent_p.L418L|CFHR4_uc001gtp.2_Silent_p.L419L	NM_006684	NP_006675	Q92496	FHR4_HUMAN	complement factor H-related 4 precursor	172	Sushi 3.					extracellular region	lipid transporter activity			ovary(1)|pancreas(1)|skin(1)	3						ATGACACATTGGACTACGAAT	0.398													17	24					0	0	0.001216	0	0
F13B	2165	broad.mit.edu	37	1	197032154	197032154	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:197032154C>T	uc001gtt.1	-	2	142	c.98G>A	c.(97-99)GGA>GAA	p.G33E		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	33	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						GGCAATTCTTCCATTTTCCAC	0.318													61	106					0	0	0.003610	0	0
CRB1	23418	broad.mit.edu	37	1	197297627	197297627	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:197297627C>T	uc001gtz.2	+	2	281	c.146C>T	c.(145-147)TCA>TTA	p.S49L	CRB1_uc010poz.1_5'UTR|CRB1_uc001gty.1_Missense_Mutation_p.S49L|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.S49L|CRB1_uc010ppb.1_Missense_Mutation_p.S49L	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	49	Extracellular (Potential).|EGF-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						AAAGATTTTTCAAAAGACAAT	0.363													15	19					0	0	0.002450	0	0
CRB1	23418	broad.mit.edu	37	1	197390611	197390611	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:197390611G>A	uc001gtz.2	+	6	1788	c.1653G>A	c.(1651-1653)CAG>CAA	p.Q551Q	CRB1_uc010poz.1_Silent_p.Q482Q|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.Q439Q|CRB1_uc010ppb.1_Silent_p.Q551Q|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.Q32Q|CRB1_uc001gub.1_Silent_p.Q200Q	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	551	Extracellular (Potential).|Laminin G-like 1.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TCAATAATCAGTCAAAGGTGC	0.458													29	63					0	0	0.001786	0	0
CRB1	23418	broad.mit.edu	37	1	197396999	197396999	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:197396999C>T	uc001gtz.2	+	7	2679	c.2544C>T	c.(2542-2544)TTC>TTT	p.F848F	CRB1_uc010poz.1_Silent_p.F779F|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Silent_p.F736F|CRB1_uc010ppb.1_Intron|CRB1_uc010ppc.1_RNA|CRB1_uc010ppd.1_Silent_p.F329F|CRB1_uc001gub.1_Silent_p.F497F	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	848	Extracellular (Potential).|Laminin G-like 2.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						GTGGATTCTTCAAAGGCTGTA	0.383													11	23					0	0	0.001855	0	0
DENND1B	163486	broad.mit.edu	37	1	197522237	197522237	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:197522237G>A	uc001guf.3	-	16	1493	c.1155C>T	c.(1153-1155)ATC>ATT	p.I385I	DENND1B_uc010ppe.1_Silent_p.I365I|DENND1B_uc010ppf.1_Intron|DENND1B_uc001gue.3_Silent_p.I355I	NM_144977	NP_659414	Q6P3S1	DEN1B_HUMAN	DENN/MADD domain containing 1B isoform 2	385	dDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity				0						GTCGACCATCGATAAACTAGA	0.303													9	24					0	0	0.006214	0	0
NEK7	140609	broad.mit.edu	37	1	198266348	198266348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:198266348C>T	uc001gun.3	+	9	1103	c.776C>T	c.(775-777)CCT>CTT	p.P259L		NM_133494	NP_598001	Q8TDX7	NEK7_HUMAN	NIMA-related kinase 7	259	Protein kinase.					cytoplasm	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity			stomach(2)|lung(1)|ovary(1)	4						CCACCTCTTCCTTCAGATCAC	0.338													36	66					0	0	0.007835	0	0
CAMSAP1L1	23271	broad.mit.edu	37	1	200817237	200817237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:200817237G>A	uc001gvl.2	+	12	1643	c.1373G>A	c.(1372-1374)GGA>GAA	p.G458E	CAMSAP1L1_uc001gvk.2_Missense_Mutation_p.G447E|CAMSAP1L1_uc001gvm.2_Missense_Mutation_p.G431E	NM_203459	NP_982284	Q08AD1	CAMP2_HUMAN	calmodulin regulated spectrin-associated protein	458						cytoplasm|microtubule	protein binding			ovary(2)|large_intestine(1)|pancreas(1)	4						CCAAACCGAGGAATCACTCGT	0.333													19	43					0	0	0.006122	0	0
KIF21B	23046	broad.mit.edu	37	1	200978053	200978053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:200978053C>T	uc001gvs.1	-	3	608	c.291G>A	c.(289-291)ATG>ATA	p.M97I	KIF21B_uc001gvr.1_Missense_Mutation_p.M97I|KIF21B_uc009wzl.1_Missense_Mutation_p.M97I|KIF21B_uc010ppn.1_Missense_Mutation_p.M97I	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	97	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						AGCCAGTGCCCATGGTGTACG	0.632													28	48					0	0	0.006320	0	0
CACNA1S	779	broad.mit.edu	37	1	201010664	201010664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:201010664C>T	uc001gvv.2	-	41	5329	c.5102G>A	c.(5101-5103)GGA>GAA	p.G1701E		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1701	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AAGGGCTCGTCCTCTGGTAGC	0.562													10	14					0	0	0.001368	0	0
CACNA1S	779	broad.mit.edu	37	1	201031215	201031215	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:201031215G>A	uc001gvv.2	-	24	3137	c.2910C>T	c.(2908-2910)GGC>GGT	p.G970G		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	970	III.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CGTAGTAGTAGCCCCTGTGGC	0.617													3	6					0	0	0.004672	0	0
CACNA1S	779	broad.mit.edu	37	1	201035439	201035439	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:201035439C>T	uc001gvv.2	-	21	2890	c.2663G>A	c.(2662-2664)AGT>AAT	p.S888N		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	888	III.|Extracellular (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	GGAGATGGCACTGGACCTGGG	0.657													11	34					0	0	0.001368	0	0
ADIPOR1	51094	broad.mit.edu	37	1	202914124	202914124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:202914124G>A	uc001gyq.3	-	5	871	c.604C>T	c.(604-606)CGG>TGG	p.R202W	ADIPOR1_uc010pqd.1_Missense_Mutation_p.R126W|ADIPOR1_uc001gyr.3_Intron|ADIPOR1_uc001gys.3_Missense_Mutation_p.R202W	NM_015999	NP_057083	Q96A54	ADR1_HUMAN	adiponectin receptor 1	202	Cytoplasmic (Potential).				fatty acid oxidation|hormone-mediated signaling pathway	integral to membrane|plasma membrane	hormone binding|protein kinase binding|receptor activity				0			BRCA - Breast invasive adenocarcinoma(75;0.141)			GAAAAAGTCCGAGAGACTTTC	0.453													39	75					0	0	0.002222	0	0
PPP1R15B	84919	broad.mit.edu	37	1	204378971	204378972	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:204378971_204378972GG>AA	uc001hav.3	-	1	1973_1974	c.1568_1569CC>TT	c.(1567-1569)TCC>TTT	p.S523F		NM_032833	NP_116222	Q5SWA1	PR15B_HUMAN	protein phosphatase 1, regulatory subunit 15B	523					regulation of translation					ovary(1)|pancreas(1)	2	all_cancers(21;0.0032)|all_neural(3;0.0218)|Glioma(3;0.0382)|Breast(84;0.179)|all_epithelial(62;0.193)|Prostate(682;0.227)		all cancers(3;1.14e-29)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.139)			CAGACTGGGAGGAATTCTCTAG	0.475													13	24					0	0	0.004672	0	0
LRRN2	10446	broad.mit.edu	37	1	204587896	204587896	+	Missense_Mutation	SNP	G	A	A	rs141763834		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:204587896G>A	uc001hbe.1	-	3	1613	c.1225C>T	c.(1225-1227)CGT>TGT	p.R409C	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.R409C|LRRN2_uc009xbf.1_Missense_Mutation_p.R409C|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	409	Extracellular (Potential).|LRRCT.				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			GGCACCTCACGGACCGGGAGG	0.657													13	24					0	0	0.001855	0	0
ELK4	2005	broad.mit.edu	37	1	205589704	205589704	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:205589704G>A	uc001hcy.1	-	3	1720	c.470C>T	c.(469-471)TCC>TTC	p.S157F	ELK4_uc001hcz.2_Missense_Mutation_p.S157F	NM_001973	NP_001964	P28324	ELK4_HUMAN	ELK4 protein isoform a	157						cytoplasm|nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity				0	Breast(84;0.07)		BRCA - Breast invasive adenocarcinoma(75;0.0908)			TACATTGGAGGAGTTCAAAGA	0.433			T	SLC45A3	prostate								21	33					0	0	0.002780	0	0
AVPR1B	553	broad.mit.edu	37	1	206224448	206224448	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:206224448C>T	uc001hds.2	+	1	166	c.8C>T	c.(7-9)TCT>TTT	p.S3F		NM_000707	NP_000698	P47901	V1BR_HUMAN	arginine vasopressin receptor 1B	3	Extracellular (Potential).				activation of phospholipase C activity|elevation of cytosolic calcium ion concentration	endosome|integral to plasma membrane	protein kinase C binding|vasopressin receptor activity			ovary(2)|large_intestine(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.0312)		Desmopressin(DB00035)|Terlipressin(DB02638)|Vasopressin(DB00067)	CTCATGGATTCTGGGCCTCTG	0.612													73	146					0	0	0.003610	0	0
DYRK3	8444	broad.mit.edu	37	1	206822100	206822100	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:206822100C>T	uc001hej.2	+	3	1725	c.1557C>T	c.(1555-1557)CAC>CAT	p.H519H	DYRK3_uc001hek.2_Intron|DYRK3_uc001hei.2_Silent_p.H499H	NM_003582	NP_003573	O43781	DYRK3_HUMAN	dual-specificity tyrosine-(Y)-phosphorylation	519	Protein kinase.				erythrocyte differentiation	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			stomach(2)|central_nervous_system(1)	3	Breast(84;0.183)		BRCA - Breast invasive adenocarcinoma(75;0.166)			CATTAAGACACCCTTGGATTA	0.498													17	27					0	0	0.007413	0	0
IL20	50604	broad.mit.edu	37	1	207039849	207039849	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:207039849C>T	uc001her.2	+	3	290	c.246C>T	c.(244-246)CTC>CTT	p.L82L	IL20_uc010pry.1_Silent_p.L153L|IL20_uc009xby.2_Silent_p.L82L	NM_018724	NP_061194	Q9NYY1	IL20_HUMAN	interleukin 20 precursor	82					positive regulation of keratinocyte differentiation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of inflammatory response	extracellular space	cytokine activity|interleukin-20 receptor binding				0	Breast(84;0.201)			OV - Ovarian serous cystadenocarcinoma(81;0.00459)		GATGCTGCCTCCTGCGCCATT	0.512													129	248					0	0	0.003610	0	0
C4BPA	722	broad.mit.edu	37	1	207318012	207318012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:207318012G>A	uc001hfo.2	+	12	1938	c.1744G>A	c.(1744-1746)GAA>AAA	p.E582K		NM_000715	NP_000706	P04003	C4BPA_HUMAN	complement component 4 binding protein, alpha	582					complement activation, classical pathway|innate immune response	extracellular region	protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3						TGAACAACTGGAACTACAGAG	0.443													8	19					0	0	0.006214	0	0
CR1	1378	broad.mit.edu	37	1	207789989	207789989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:207789989C>T	uc001hfy.2	+	33	5521	c.5381C>T	c.(5380-5382)CCC>CTC	p.P1794L	CR1_uc001hfx.2_Missense_Mutation_p.P2244L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1794	Sushi 28.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GGAGATATTCCCTATGGAAAA	0.453													31	43					0	0	0.002445	0	0
PROX1	5629	broad.mit.edu	37	1	214170566	214170566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:214170566G>A	uc001hkh.2	+	2	960	c.688G>A	c.(688-690)GAA>AAA	p.E230K	PROX1_uc001hkg.1_Missense_Mutation_p.E230K	NM_002763	NP_002754	Q92786	PROX1_HUMAN	prospero homeobox 1	230					aorta smooth muscle tissue morphogenesis|atrial cardiac muscle tissue morphogenesis|brain development|dorsal spinal cord development|embryonic retina morphogenesis in camera-type eye|endocardium formation|hepatocyte differentiation|kidney development|lens fiber cell morphogenesis|lung development|lymphangiogenesis|negative regulation of bile acid biosynthetic process|negative regulation of cell proliferation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of viral genome replication|neural tube development|olfactory placode formation|optic placode formation involved in camera-type eye formation|otic placode formation|pancreas development|positive regulation of cyclin-dependent protein kinase activity|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of heart growth|positive regulation of S phase of mitotic cell cycle|positive regulation of sarcomere organization|positive regulation of transcription, DNA-dependent|regulation of transcription involved in lymphatic endothelial cell fate commitment|skeletal muscle thin filament assembly|venous blood vessel morphogenesis|ventricular cardiac muscle tissue morphogenesis|ventricular cardiac myofibril development|ventricular septum morphogenesis	cytoplasm|nucleus	DBD domain binding|LBD domain binding|ligand-dependent nuclear receptor binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding			ovary(3)|lung(1)|central_nervous_system(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(81;0.0179)|all cancers(67;0.0488)|GBM - Glioblastoma multiforme(131;0.188)|Epithelial(68;0.219)		AGCCCGAAAAGAACAGAAGCG	0.517													11	21					0	0	0.001368	0	0
USH2A	7399	broad.mit.edu	37	1	215914744	215914744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:215914744C>T	uc001hku.1	-	60	12071	c.11684G>A	c.(11683-11685)GGA>GAA	p.G3895E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	3895	Fibronectin type-III 24.|Extracellular (Potential).		G -> E (in USH2A).		maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GATGATGATTCCATTTGGTTT	0.398										HNSCC(13;0.011)			33	55					0	0	0.003755	0	0
USH2A	7399	broad.mit.edu	37	1	216040418	216040418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:216040418C>T	uc001hku.1	-	44	9163	c.8776G>A	c.(8776-8778)GAG>AAG	p.E2926K		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2926	Fibronectin type-III 16.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GCTCCTCTCTCTGGAAGACCA	0.463										HNSCC(13;0.011)			24	32					0	0	0.003330	0	0
OBSCN	84033	broad.mit.edu	37	1	228432138	228432138	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:228432138C>A	uc009xez.1	+	11	3391	c.3347C>A	c.(3346-3348)TCC>TAC	p.S1116Y	OBSCN_uc001hsn.2_Missense_Mutation_p.S1116Y	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	1116	Poly-Ser.|Ig-like 11.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				AAGCTGAGCTCCAGCTCAAAA	0.637													18	34					5.35267e-07	6.48762e-07	0.007413	1	0
KCNK1	3775	broad.mit.edu	37	1	233802523	233802523	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:233802523G>A	uc010pxo.1	+	2	706	c.538G>A	c.(538-540)GCC>ACC	p.A180T	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	180	Helical; (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	GCAGGTGGTGGCCATCGTCCA	0.607													19	16					0	0	0.001882	0	0
ERO1LB	56605	broad.mit.edu	37	1	236399106	236399106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:236399106G>A	uc001hxt.2	-	8	912	c.656C>T	c.(655-657)CCT>CTT	p.P219L		NM_019891	NP_063944	Q86YB8	ERO1B_HUMAN	endoplasmic reticulum oxidoreductin 1-Lbeta	219					electron transport chain|protein thiol-disulfide exchange|transport	endoplasmic reticulum membrane	flavin adenine dinucleotide binding|oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor|unfolded protein binding				0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.123)|Acute lymphoblastic leukemia(190;0.205)|Prostate(94;0.219)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)			AGGCGCCAGAGGATTTAAAGG	0.299													13	15					0	0	0.006122	0	0
MTR	4548	broad.mit.edu	37	1	237016305	237016305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:237016305C>T	uc001hyi.3	+	18	2293	c.1870C>T	c.(1870-1872)CAT>TAT	p.H624Y	MTR_uc010pxw.1_Missense_Mutation_p.H217Y|MTR_uc010pxx.1_Missense_Mutation_p.H624Y|MTR_uc010pxy.1_Intron	NM_000254	NP_000245	Q99707	METH_HUMAN	5-methyltetrahydrofolate-homocysteine	624	Pterin-binding.				nervous system development|xenobiotic metabolic process	cytosol	cobalamin binding|homocysteine S-methyltransferase activity|methionine synthase activity|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;2.79e-22)|all_epithelial(177;4.84e-14)|Breast(1374;0.00123)|Prostate(94;0.0181)|Lung SC(1967;0.0262)|Acute lymphoblastic leukemia(190;0.117)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)	KIRC - Kidney renal clear cell carcinoma(1967;0.248)	Hydroxocobalamin(DB00200)|L-Methionine(DB00134)|Tetrahydrofolic acid(DB00116)	TGATGATATCCATAAGGAACT	0.433													12	48					0	0	0.000978	0	0
RYR2	6262	broad.mit.edu	37	1	237758937	237758937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:237758937G>A	uc001hyl.1	+	34	4696	c.4576G>A	c.(4576-4578)GAA>AAA	p.E1526K		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1526	Cytoplasmic (By similarity).|B30.2/SPRY 3.|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CAATGGCAAGGAACTGAGCAC	0.498													8	11					0	0	0.000978	0	0
RYR2	6262	broad.mit.edu	37	1	237777781	237777781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:237777781G>A	uc001hyl.1	+	37	5473	c.5353G>A	c.(5353-5355)GAC>AAC	p.D1785N		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1785	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GTTCCCACTGGACATCCTCAA	0.507													33	54					0	0	0.002445	0	0
RYR2	6262	broad.mit.edu	37	1	237806719	237806719	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:237806719C>T	uc001hyl.1	+	48	7434	c.7314C>T	c.(7312-7314)ATC>ATT	p.I2438I		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2438	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TTATCAGCATCGCTTTTCAGA	0.438													28	46					0	0	0.006320	0	0
RYR2	6262	broad.mit.edu	37	1	237947468	237947468	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:237947468C>T	uc001hyl.1	+	90	12576	c.12456C>T	c.(12454-12456)ATC>ATT	p.I4152I	RYR2_uc010pya.1_Silent_p.I567I	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4152					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATTTTGAAATCAGTGAGTCCA	0.502													26	39					0	0	0.002445	0	0
FMN2	56776	broad.mit.edu	37	1	240370124	240370124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:240370124G>A	uc010pyd.1	+	5	2237	c.2012G>A	c.(2011-2013)GGA>GAA	p.G671E	FMN2_uc010pye.1_Missense_Mutation_p.G675E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	671	Potential.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			AAGTCTGAGGGACAGGCCACT	0.428													13	25					0	0	0.004007	0	0
KIF26B	55083	broad.mit.edu	37	1	245530263	245530263	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:245530263C>T	uc001ibf.1	+	3	1033	c.593C>T	c.(592-594)GCC>GTC	p.A198V	KIF26B_uc010pyq.1_Missense_Mutation_p.A198V|KIF26B_uc010pyr.1_5'UTR	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	198					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AAGCAGGAGGCCATCCAGATG	0.627													7	15					0	0	0.006214	0	0
KIF26B	55083	broad.mit.edu	37	1	245704184	245704184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:245704184C>T	uc001ibf.1	+	5	1722	c.1282C>T	c.(1282-1284)CCT>TCT	p.P428S	KIF26B_uc010pyq.1_Missense_Mutation_p.P428S|KIF26B_uc001ibg.1_Missense_Mutation_p.P46S	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	428					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			GCAGACCTCCCCTCCCCCAGC	0.592													17	32					0	0	0.004007	0	0
OR2B11	127623	broad.mit.edu	37	1	247615041	247615041	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:247615041C>T	uc010pyx.1	-	1	244	c.244G>A	c.(244-246)GTC>ATC	p.V82I		NM_001004492	NP_001004492	Q5JQS5	OR2BB_HUMAN	olfactory receptor, family 2, subfamily B,	82	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			upper_aerodigestive_tract(1)	1	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.241)	OV - Ovarian serous cystadenocarcinoma(106;0.0188)			ATCTGAGGGACTGTCGTGGTG	0.562													24	44					0	0	0.003330	0	0
OR2C3	81472	broad.mit.edu	37	1	247695288	247695288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:247695288C>T	uc009xgy.2	-	2	888	c.526G>A	c.(526-528)GAC>AAC	p.D176N	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	176	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AAGAAGTGGTCGATGCAATTG	0.552													11	8					0	0	0.000978	0	0
C1orf150	148823	broad.mit.edu	37	1	247737453	247737453	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:247737453G>A	uc001idf.2	+	5	222	c.177G>A	c.(175-177)GAG>GAA	p.E59E	C1orf150_uc009xgw.2_RNA|C1orf150_uc001ida.3_RNA|C1orf150_uc001idb.3_RNA|C1orf150_uc009xgx.2_RNA	NM_145278	NP_660321	Q5JQS6	CA150_HUMAN	hypothetical protein LOC148823	59											0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0241)			AGGAAAACGAGAATGGCAGTG	0.433													38	58					0	0	0.003214	0	0
OR2L8	391190	broad.mit.edu	37	1	248113064	248113064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:248113064G>A	uc001idt.1	+	1	905	c.905G>A	c.(904-906)CGA>CAA	p.R302Q	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			GCCCTGACACGAGTGAGTCAG	0.473													14	18					0	0	0.004990	0	0
OR2M3	127062	broad.mit.edu	37	1	248366576	248366576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:248366576G>A	uc010pzg.1	+	1	207	c.207G>A	c.(205-207)ATG>ATA	p.M69I		NM_001004689	NP_001004689	Q8NG83	OR2M3_HUMAN	olfactory receptor, family 2, subfamily M,	69	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TGTCCCTCATGGACCTCATGC	0.532													66	155					0	0	0.003610	0	0
OR2T4	127074	broad.mit.edu	37	1	248525508	248525508	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr1:248525508T>G	uc001ieh.1	+	1	626	c.626T>G	c.(625-627)TTC>TGC	p.F209C		NM_001004696	NP_001004696	Q8NH00	OR2T4_HUMAN	olfactory receptor, family 2, subfamily T,	209	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			ATTCATCATTTCTTCTGTGAA	0.502													41	78					0	0	0.001951	0	0
LARP4B	23185	broad.mit.edu	37	10	888923	888923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:888923G>A	uc001ifs.1	-	6	636	c.595C>T	c.(595-597)CAC>TAC	p.H199Y		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	199	HTH La-type RNA-binding.						nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						TTCTTGATGTGGTCGAGGTTA	0.388													10	22					0	0	0.006214	0	0
AKR1C4	1109	broad.mit.edu	37	10	5242283	5242283	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:5242283A>G	uc001ihw.2	+	2	257	c.224A>G	c.(223-225)AAG>AGG	p.K75R		NM_001818	NP_001809	P17516	AK1C4_HUMAN	aldo-keto reductase family 1, member C4	75					androgen metabolic process|bile acid biosynthetic process	cytosol	aldo-keto reductase (NADP) activity|androsterone dehydrogenase (B-specific) activity|bile acid transmembrane transporter activity|chlordecone reductase activity|electron carrier activity			ovary(1)	1					NADH(DB00157)	GGCAGTGTGAAGAGAGAAGAC	0.418													23	49					0	0	0.003954	0	0
TUBAL3	79861	broad.mit.edu	37	10	5436106	5436106	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:5436106C>T	uc001ihy.2	-	4	755	c.715G>A	c.(715-717)GTT>ATT	p.V239I	TUBAL3_uc001ihz.2_Missense_Mutation_p.V199I	NM_024803	NP_079079	A6NHL2	TBAL3_HUMAN	tubulin, alpha-like 3	239					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			skin(1)	1						ACCACCTGAACCACCAATCTA	0.488													24	33					0	0	0.002299	0	0
IL15RA	3601	broad.mit.edu	37	10	6005800	6005800	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:6005800G>A	uc001iiv.2	-	3	370	c.288C>T	c.(286-288)GAC>GAT	p.D96D	IL15RA_uc010qau.1_Intron|IL15RA_uc001iiw.2_Silent_p.D60D|IL15RA_uc001iix.2_Intron|IL15RA_uc001iiy.2_Intron	NM_002189	NP_002180	Q13261	I15RA_HUMAN	interleukin 15 receptor, alpha isoform 1	96	Extracellular (Potential).				cell proliferation	cytoplasmic vesicle membrane|endoplasmic reticulum membrane|extracellular space|Golgi membrane|integral to membrane|nuclear membrane	cytokine receptor activity				0						CCAGGGCAGGGTCTCCTAGAG	0.537													11	8					0	0	0.000978	0	0
PFKFB3	5209	broad.mit.edu	37	10	6255623	6255623	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:6255623C>T	uc001ije.2	+	2	498	c.114C>T	c.(112-114)ATC>ATT	p.I38I	PFKFB3_uc001ijd.2_Silent_p.I18I|PFKFB3_uc009xii.2_RNA|PFKFB3_uc010qaw.1_Silent_p.I52I|PFKFB3_uc001ijf.2_Silent_p.I38I	NM_004566	NP_004557	Q16875	F263_HUMAN	6-phosphofructo-2-kinase/fructose-2,	38	6-phosphofructo-2-kinase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity|identical protein binding			ovary(2)|central_nervous_system(1)	3						CCACCGTCATCGTCATGGTGG	0.582													26	55					0	0	0.005443	0	0
CACNB2	783	broad.mit.edu	37	10	18828384	18828384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:18828384G>A	uc001ipr.2	+	14	1774	c.1714G>A	c.(1714-1716)GAA>AAA	p.E572K	CACNB2_uc009xjz.1_Missense_Mutation_p.E322K|CACNB2_uc001ips.2_Missense_Mutation_p.E548K|CACNB2_uc001ipt.2_Missense_Mutation_p.E534K|CACNB2_uc001ipu.2_Missense_Mutation_p.E544K|CACNB2_uc001ipv.2_Missense_Mutation_p.E520K|CACNB2_uc009xka.1_Missense_Mutation_p.E506K|CACNB2_uc001ipw.2_Missense_Mutation_p.E479K|CACNB2_uc001ipx.2_Missense_Mutation_p.E517K|CACNB2_uc001ipz.2_Missense_Mutation_p.E494K|CACNB2_uc001ipy.2_Missense_Mutation_p.E518K|CACNB2_uc010qco.1_Missense_Mutation_p.E486K|CACNB2_uc001iqa.2_Missense_Mutation_p.E524K|NSUN6_uc001iqb.2_Intron	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	572					axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGAGCCAAAGGAAGATTATTC	0.567													6	9					0	0	0.001168	0	0
NEBL	10529	broad.mit.edu	37	10	21074700	21074700	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:21074700C>T	uc001iqi.2	-	28	3418	c.3021G>A	c.(3019-3021)GCG>GCA	p.A1007A	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Silent_p.A263A	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	1007	SH3.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CAATGTAATTCGCTGGGAGCA	0.413													15	11					0	0	0.004990	0	0
C10orf140	387640	broad.mit.edu	37	10	21806505	21806505	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:21806505T>C	uc010qcs.1	-	2	517	c.247A>G	c.(247-249)ATC>GTC	p.I83V	C10orf140_uc009xkd.2_Missense_Mutation_p.I83V			Q1XH10	DLN1_HUMAN	SubName: Full=cDNA FLJ56186;	83						nucleus	nucleotide binding			ovary(1)	1						TCCCGGGAGATGAGCGTGCAT	0.597													9	9					0	0	0.004482	0	0
MYO3A	53904	broad.mit.edu	37	10	26482238	26482238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:26482238C>T	uc001isn.2	+	32	4903	c.4543C>T	c.(4543-4545)CAT>TAT	p.H1515Y	MYO3A_uc009xkp.1_RNA|MYO3A_uc009xkq.1_Intron	NM_017433	NP_059129	Q8NEV4	MYO3A_HUMAN	myosin IIIA	1515					protein autophosphorylation|response to stimulus|sensory perception of sound|visual perception	cytoplasm|filamentous actin|filopodium|myosin complex	actin binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|plus-end directed microfilament motor activity|protein serine/threonine kinase activity			ovary(6)|stomach(3)|lung(3)|central_nervous_system(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	18						TTATCTACTTCATGTAAGTGG	0.443													5	8					0	0	0.000602	0	0
ZNF248	57209	broad.mit.edu	37	10	38121310	38121311	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:38121310_38121311GG>AA	uc001izd.1	-	6	1471_1472	c.972_973CC>TT	c.(970-975)CTCCGT>CTTTGT	p.R325C	ZNF248_uc009xmc.2_Intron|ZNF248_uc001izb.2_Intron|ZNF248_uc001izc.2_Intron|ZNF248_uc010qeu.1_Missense_Mutation_p.R325C	NM_021045	NP_066383	Q8NDW4	ZN248_HUMAN	zinc finger protein 248	325					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TTATATTCACGGAGAATCTTTC	0.356													20	38					0	0	0.004672	0	0
DRGX	644168	broad.mit.edu	37	10	50574372	50574372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:50574372G>A	uc010qgq.1	-	6	596	c.596C>T	c.(595-597)CCC>CTC	p.P199L		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	199					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCCATAGGTGGGAAGGAAGGA	0.607													25	35					0	0	0.004656	0	0
ERCC6	2074	broad.mit.edu	37	10	50691556	50691556	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:50691556G>A	uc001jhs.3	-	9	1982	c.1828C>T	c.(1828-1830)CTA>TTA	p.L610L	ERCC6_uc010qgr.1_5'UTR|ERCC6_uc001jhr.3_Silent_p.L10L	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	610	Helicase ATP-binding.				base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						TCTCGAATTAGTTTCTCCTGA	0.353								Direct_reversal_of_damage|NER					16	33					0	0	0.004990	0	0
PCDH15	65217	broad.mit.edu	37	10	55582303	55582303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:55582303C>T	uc001jju.1	-	33	5578	c.5183G>A	c.(5182-5184)AGA>AAA	p.R1728K	PCDH15_uc010qhq.1_Intron|PCDH15_uc010qhr.1_Intron|PCDH15_uc010qhs.1_Intron|PCDH15_uc010qht.1_Intron|PCDH15_uc010qhu.1_Intron|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.R1725K|PCDH15_uc010qhw.1_Missense_Mutation_p.R1688K|PCDH15_uc010qhx.1_Missense_Mutation_p.R1659K|PCDH15_uc010qhy.1_Missense_Mutation_p.R1735K|PCDH15_uc010qhz.1_Missense_Mutation_p.R1730K|PCDH15_uc010qia.1_Missense_Mutation_p.R1708K|PCDH15_uc010qib.1_Missense_Mutation_p.R1705K	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1728	Cytoplasmic (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				AAAAATATTTCTTTCGGTTTC	0.299										HNSCC(58;0.16)			8	17					0	0	0.003080	0	0
PCDH15	65217	broad.mit.edu	37	10	55839163	55839163	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:55839163C>T	uc001jju.1	-	17	2414	c.2019G>A	c.(2017-2019)GGG>GGA	p.G673G	PCDH15_uc010qhq.1_Silent_p.G678G|PCDH15_uc010qhr.1_Silent_p.G673G|PCDH15_uc010qhs.1_Silent_p.G685G|PCDH15_uc010qht.1_Silent_p.G680G|PCDH15_uc010qhu.1_Silent_p.G673G|PCDH15_uc001jjv.1_Silent_p.G651G|PCDH15_uc010qhv.1_Silent_p.G673G|PCDH15_uc010qhw.1_Silent_p.G636G|PCDH15_uc010qhx.1_Silent_p.G602G|PCDH15_uc010qhy.1_Silent_p.G678G|PCDH15_uc010qhz.1_Silent_p.G673G|PCDH15_uc010qia.1_Silent_p.G651G|PCDH15_uc010qib.1_Silent_p.G651G|PCDH15_uc001jjw.2_Silent_p.G673G	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	673	Cadherin 6.|Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				CCAGTGCTTTCCCTAAGGTTA	0.428										HNSCC(58;0.16)			63	131					0	0	0.003610	0	0
ANK3	288	broad.mit.edu	37	10	61834849	61834849	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:61834849T>C	uc001jky.2	-	37	5982	c.5790A>G	c.(5788-5790)CAA>CAG	p.Q1930Q	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1930					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GGAGTTCAGGTTGGAATGGCT	0.403													10	25					0	0	0.000673	0	0
ANK3	288	broad.mit.edu	37	10	61834949	61834949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:61834949G>A	uc001jky.2	-	37	5882	c.5690C>T	c.(5689-5691)TCC>TTC	p.S1897F	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	1897	Ser-rich.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CTCCTGACTGGAAGATAAAGA	0.448													29	32					0	0	0.007291	0	0
ARID5B	84159	broad.mit.edu	37	10	63661961	63661961	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:63661961A>T	uc001jlt.1	+	2	91	c.65A>T	c.(64-66)TAC>TTC	p.Y22F	ARID5B_uc010qil.1_Missense_Mutation_p.Y22F	NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	22					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					TACATTTTCTACAAGGCTTTT	0.453													24	49					0	0	0.002299	0	0
ARID5B	84159	broad.mit.edu	37	10	63852268	63852268	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:63852268C>T	uc001jlt.1	+	10	3072	c.3046C>T	c.(3046-3048)CTG>TTG	p.L1016L		NM_032199	NP_115575	Q14865	ARI5B_HUMAN	AT rich interactive domain 5B (MRF1-like)	1016					liver development|negative regulation of transcription, DNA-dependent|positive regulation of sequence-specific DNA binding transcription factor activity|transcription, DNA-dependent		protein binding|transcription regulatory region DNA binding			ovary(2)|upper_aerodigestive_tract(1)|kidney(1)	4	Prostate(12;0.016)|all_hematologic(501;0.215)					CAAGCGCAGCCTGGAGGATTT	0.577													15	64					0	0	0.004007	0	0
SIRT1	23411	broad.mit.edu	37	10	69651312	69651312	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:69651312G>A	uc001jnd.2	+	4	995	c.942G>A	c.(940-942)AAG>AAA	p.K314K	SIRT1_uc010qis.1_Silent_p.K19K|SIRT1_uc009xpp.2_Silent_p.K122K|SIRT1_uc001jne.2_5'UTR	NM_012238	NP_036370	Q96EB6	SIRT1_HUMAN	sirtuin 1 isoform a	314	Deacetylase sirtuin-type.				apoptosis|cell aging|cellular response to hydrogen peroxide|cellular response to starvation|chromatin silencing at rDNA|DNA repair|DNA replication|establishment of chromatin silencing|histone H3 deacetylation|interspecies interaction between organisms|maintenance of chromatin silencing|muscle organ development|negative regulation of androgen receptor signaling pathway|negative regulation of cell growth|negative regulation of DNA damage response, signal transduction by p53 class mediator|negative regulation of fat cell differentiation|negative regulation of helicase activity|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|peptidyl-lysine acetylation|peptidyl-lysine deacetylation|positive regulation of anti-apoptosis|positive regulation of chromatin silencing|positive regulation of DNA repair|regulation of apoptosis|regulation of cell proliferation|regulation of endodeoxyribonuclease activity|regulation of protein import into nucleus, translocation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|rRNA processing|transcription, DNA-dependent|triglyceride mobilization|white fat cell differentiation	chromatin silencing complex|cytoplasm|nuclear euchromatin|nuclear heterochromatin|nuclear inner membrane|nucleolus|PML body|rDNA heterochromatin	bHLH transcription factor binding|histone binding|HLH domain binding|identical protein binding|mitogen-activated protein kinase binding|NAD+ binding|NAD-dependent histone deacetylase activity (H3-K9 specific)|p53 binding|protein C-terminus binding|transcription corepressor activity|zinc ion binding				0						AGTTTGCAAAGGTACTATGAA	0.378													50	97					0	0	0.003610	0	0
TET1	80312	broad.mit.edu	37	10	70446316	70446316	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:70446316C>T	uc001jok.3	+	11	5761	c.5256C>T	c.(5254-5256)CCC>CCT	p.P1752P		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1752					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AGCCTGTTCCCCGTTCTGGAA	0.502													21	44					0	0	0.001523	0	0
TET1	80312	broad.mit.edu	37	10	70450796	70450796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:70450796C>T	uc001jok.3	+	12	6141	c.5636C>T	c.(5635-5637)CCC>CTC	p.P1879L		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1879					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						AGCAGCACTCCCCACTGTACG	0.582													21	23					0	0	0.001882	0	0
DDX50	79009	broad.mit.edu	37	10	70670845	70670845	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:70670845T>A	uc001jou.2	+	4	589	c.482T>A	c.(481-483)TTT>TAT	p.F161Y	DDX50_uc001jot.2_Missense_Mutation_p.F161Y|DDX50_uc010qjc.1_Missense_Mutation_p.F161Y	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	161	Q motif.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						ACATATCTCTTTCCTATTCAA	0.343													48	57					0	0	0.003610	0	0
DDX50	79009	broad.mit.edu	37	10	70670979	70670979	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:70670979A>G	uc001jou.2	+	4	723	c.616A>G	c.(616-618)ATT>GTT	p.I206V	DDX50_uc001jot.2_Missense_Mutation_p.I206V|DDX50_uc010qjc.1_Missense_Mutation_p.I206V	NM_024045	NP_076950	Q9BQ39	DDX50_HUMAN	nucleolar protein GU2	206	Helicase ATP-binding.					nucleolus	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1						TCAAGAAACAATTAAAAAAAG	0.373													27	56					0	0	0.001512	0	0
HKDC1	80201	broad.mit.edu	37	10	71020984	71020985	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:71020984_71020985GG>AA	uc001jpf.3	+	16	2439_2440	c.2306_2307GG>AA	c.(2305-2307)GGG>GAA	p.G769E	HKDC1_uc010qje.1_Missense_Mutation_p.G632E|HKDC1_uc009xqb.2_RNA	NM_025130	NP_079406	Q2TB90	HKDC1_HUMAN	hexokinase domain containing 1	769					glycolysis	mitochondrion|nucleus	ATP binding|hexokinase activity			ovary(4)|skin(1)	5						CTCTTCCGAGGGCAGATTTCAG	0.53													13	24					0	0	0.004672	0	0
COL13A1	1305	broad.mit.edu	37	10	71648064	71648064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:71648064C>T	uc001jpr.1	+	7	1063	c.527C>T	c.(526-528)CCC>CTC	p.P176L	COL13A1_uc001jqj.1_Missense_Mutation_p.P176L|COL13A1_uc001jps.1_Missense_Mutation_p.P147L|COL13A1_uc001jpt.1_Missense_Mutation_p.P176L|COL13A1_uc001jpu.1_Missense_Mutation_p.P176L|COL13A1_uc001jpv.1_Missense_Mutation_p.P176L|COL13A1_uc001jpx.1_Missense_Mutation_p.P176L|COL13A1_uc001jpw.1_Missense_Mutation_p.P164L|COL13A1_uc001jpy.1_Missense_Mutation_p.P155L|COL13A1_uc001jpz.1_Missense_Mutation_p.P138L|COL13A1_uc001jqa.1_Missense_Mutation_p.P138L|COL13A1_uc001jqc.1_Missense_Mutation_p.P176L|COL13A1_uc001jqb.1_Missense_Mutation_p.P147L|COL13A1_uc001jql.2_Missense_Mutation_p.P176L|COL13A1_uc001jqd.1_Missense_Mutation_p.P164L|COL13A1_uc001jqe.1_Missense_Mutation_p.P159L|COL13A1_uc001jqf.1_Missense_Mutation_p.P176L|COL13A1_uc001jqg.1_Missense_Mutation_p.P176L|COL13A1_uc001jqh.1_Missense_Mutation_p.P176L|COL13A1_uc001jqi.1_Missense_Mutation_p.P176L|COL13A1_uc010qjf.1_5'UTR|COL13A1_uc001jqk.1_Missense_Mutation_p.P36L	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	176	Extracellular (Potential).|Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	TTTCAGGGTCCCATTGGGCTG	0.413													7	11					0	0	0.003080	0	0
KIAA1274	27143	broad.mit.edu	37	10	72298880	72298880	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:72298880C>T	uc001jrd.3	+	14	1883	c.1602C>T	c.(1600-1602)GAC>GAT	p.D534D	KIAA1274_uc001jre.3_5'Flank	NM_014431	NP_055246	Q9ULE6	PALD_HUMAN	KIAA1274	534										ovary(2)|central_nervous_system(1)	3						ACCTGACGGACGCCAAGAGGA	0.697													9	11					0	0	0.004482	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72468482	72468482	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:72468482G>A	uc001jrh.2	+	4	818	c.818G>A	c.(817-819)CGC>CAC	p.R273H	ADAMTS14_uc001jrg.2_Missense_Mutation_p.R273H	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	273	Peptidase M12B.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						TCGGTGGTTCGCTTCCATGGC	0.617													30	41					0	0	0.004289	0	0
CDH23	64072	broad.mit.edu	37	10	73553142	73553142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:73553142C>T	uc001jrx.3	+	46	6834	c.6457C>T	c.(6457-6459)CCT>TCT	p.P2153S	CDH23_uc001jsg.3_5'Flank|CDH23_uc001jsh.3_5'Flank	NM_022124	NP_071407	Q9H251	CAD23_HUMAN	cadherin-like 23 isoform 1 precursor	2153	Cadherin 20.|Extracellular (Potential).				calcium ion transport|calcium-dependent cell-cell adhesion|cytosolic calcium ion homeostasis|equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	cytosol|integral to membrane|plasma membrane|stereocilium	calcium ion binding|protein binding			central_nervous_system(5)|large_intestine(4)|ovary(2)	11						GGGCACCGTTCCTCTCTCGGG	0.597													17	39					0	0	0.006122	0	0
P4HA1	5033	broad.mit.edu	37	10	74806805	74806805	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:74806805G>A	uc010qka.1	-	9	1289	c.955C>T	c.(955-957)CCT>TCT	p.P319S	P4HA1_uc001jtg.2_Missense_Mutation_p.P319S|P4HA1_uc001jth.2_Missense_Mutation_p.P319S|P4HA1_uc010qkb.1_Missense_Mutation_p.P319S|P4HA1_uc001jti.2_RNA	NM_001142595	NP_001136067	P13674	P4HA1_HUMAN	prolyl 4-hydroxylase, alpha I subunit isoform 2	319						endoplasmic reticulum lumen|mitochondrion	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 4-dioxygenase activity			ovary(1)	1	Prostate(51;0.0198)				Hydralazine(DB01275)|L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	ATAAATTTAGGATTACGGTTT	0.358													20	32					0	0	0.001882	0	0
USP54	159195	broad.mit.edu	37	10	75258871	75258871	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:75258871C>T	uc001juo.2	-	22	4588	c.4571G>A	c.(4570-4572)GGA>GAA	p.G1524E	USP54_uc010qkk.1_Missense_Mutation_p.G659E|USP54_uc001juk.2_Missense_Mutation_p.G612E|USP54_uc001jul.2_Missense_Mutation_p.G565E|USP54_uc001jum.2_RNA|USP54_uc001jun.2_RNA	NM_152586	NP_689799	Q70EL1	UBP54_HUMAN	ubiquitin specific peptidase 54	1524					ubiquitin-dependent protein catabolic process		protein binding|ubiquitin thiolesterase activity			breast(3)|lung(2)|kidney(1)	6	Prostate(51;0.0112)					CAAAGTCCTTCCTGTGTACTT	0.527													57	112					0	0	0.003610	0	0
MYOZ1	58529	broad.mit.edu	37	10	75391751	75391751	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:75391751C>T	uc001jur.2	-	6	1202	c.837G>A	c.(835-837)GGG>GGA	p.G279G		NM_021245	NP_067068	Q9NP98	MYOZ1_HUMAN	myozenin 1	279					myofibril assembly	nucleus|pseudopodium	FATZ binding			ovary(2)	2	Prostate(51;0.0112)					CTACAGGCTCCCCAGAGCTCA	0.532													9	23					0	0	0.006214	0	0
NDST2	8509	broad.mit.edu	37	10	75567398	75567398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:75567398G>A	uc001jvk.2	-	3	1553	c.749C>T	c.(748-750)CCC>CTC	p.P250L	NDST2_uc010qks.1_5'Flank|NDST2_uc010qkt.1_Missense_Mutation_p.P127L|NDST2_uc009xro.2_5'Flank|NDST2_uc010qku.1_Missense_Mutation_p.P127L	NM_003635	NP_003626	P52849	NDST2_HUMAN	heparan glucosaminyl	250	Lumenal (Potential).|Heparan sulfate N-deacetylase 2.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			ovary(1)	1	Prostate(51;0.0112)					TGGCACTGCGGGCTCAGCTGG	0.582													13	19					0	0	0.001368	0	0
CAMK2G	818	broad.mit.edu	37	10	75607101	75607101	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:75607101G>A	uc001jvv.1	-	10	801	c.677C>T	c.(676-678)CCA>CTA	p.P226L	CAMK2G_uc001jvm.1_Missense_Mutation_p.P234L|CAMK2G_uc001jvo.1_Missense_Mutation_p.P234L|CAMK2G_uc001jvq.1_Missense_Mutation_p.P234L|CAMK2G_uc001jvr.1_Missense_Mutation_p.P234L|CAMK2G_uc001jvp.1_Missense_Mutation_p.P234L|CAMK2G_uc001jvs.1_Missense_Mutation_p.P234L|CAMK2G_uc001jvt.1_RNA|CAMK2G_uc001jvu.1_Missense_Mutation_p.P212L|CAMK2G_uc010qkv.1_Intron	NM_172171	NP_751911	Q13555	KCC2G_HUMAN	calcium/calmodulin-dependent protein kinase II	234	Protein kinase.				insulin secretion|interferon-gamma-mediated signaling pathway|synaptic transmission	calcium- and calmodulin-dependent protein kinase complex|cytosol|endocytic vesicle membrane|nucleoplasm|plasma membrane	ATP binding|calcium-dependent protein serine/threonine phosphatase activity|calmodulin binding|calmodulin-dependent protein kinase activity			lung(1)|stomach(1)	2	Prostate(51;0.0112)					TTCTGGTGATGGGAACTAAGG	0.488													14	33					0	0	0.002450	0	0
KCNMA1	3778	broad.mit.edu	37	10	78850220	78850220	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:78850220G>A	uc001jxn.2	-	10	1449	c.1272C>T	c.(1270-1272)TTC>TTT	p.F424F	KCNMA1_uc001jxj.2_Silent_p.F424F|KCNMA1_uc001jxk.1_Silent_p.F39F|KCNMA1_uc009xrt.1_Silent_p.F244F|KCNMA1_uc001jxl.1_Silent_p.F78F|KCNMA1_uc001jxo.2_Silent_p.F424F|KCNMA1_uc001jxm.2_Silent_p.F424F|KCNMA1_uc001jxq.2_Silent_p.F424F	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	424	RCK N-terminal.|Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	AGTCCTTCAGGAAGTTGGAAA	0.532													23	53					0	0	0.006320	0	0
POLR3A	11128	broad.mit.edu	37	10	79785850	79785850	+	Splice_Site	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:79785850A>C	uc001jzn.2	-	2	274	c.180_splice	c.e2+1	p.M60_splice		NM_007055	NP_008986	O14802	RPC1_HUMAN	polymerase (RNA) III (DNA directed) polypeptide						innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	DNA-directed RNA polymerase III complex	DNA binding|DNA-directed RNA polymerase activity|ribonucleoside binding|zinc ion binding				0	all_cancers(46;0.0356)|all_epithelial(25;0.00102)|Breast(12;0.00124)|Prostate(51;0.0095)		Epithelial(14;0.00161)|OV - Ovarian serous cystadenocarcinoma(4;0.00323)|all cancers(16;0.00646)			AGGGGGCCTTACCATCCTATG	0.537													17	40					0	0	0.001882	0	0
CYP2C8	1558	broad.mit.edu	37	10	96802811	96802811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:96802811G>A	uc001kkb.2	-	7	1080	c.985C>T	c.(985-987)CAT>TAT	p.H329Y	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.H259Y|CYP2C8_uc010qob.1_Missense_Mutation_p.H243Y|CYP2C8_uc010qoc.1_Missense_Mutation_p.H227Y|CYP2C8_uc010qod.1_Missense_Mutation_p.H243Y	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	329					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	CCAATTACATGATCAATCTCT	0.443													9	34					0	0	0.000673	0	0
ZNF518A	9849	broad.mit.edu	37	10	97916114	97916114	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:97916114A>G	uc001klp.2	+	6	892	c.35A>G	c.(34-36)GAA>GGA	p.E12G	ZNF518A_uc001klo.1_Intron|ZNF518A_uc001klq.2_Missense_Mutation_p.E12G|ZNF518A_uc001klr.2_Missense_Mutation_p.E12G	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	12					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		TTTTGTGATGAAAAACAAACT	0.289													17	38					0	0	0.006122	0	0
ABCC2	1244	broad.mit.edu	37	10	101578582	101578582	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:101578582C>T	uc001kqf.2	+	18	2446	c.2307C>T	c.(2305-2307)ATC>ATT	p.I769I		NM_000392	NP_000383	Q92887	MRP2_HUMAN	ATP-binding cassette, sub-family C (CFTR/MRP),	769	Cytoplasmic (By similarity).|ABC transporter 1.					apical plasma membrane|integral to plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|organic anion transmembrane transporter activity			ovary(1)	1		Colorectal(252;0.234)		Epithelial(162;2.77e-10)|all cancers(201;2.47e-08)	Adenosine triphosphate(DB00171)|Norgestimate(DB00957)|Pravastatin(DB00175)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	AGCAGCGGATCAGCCTGGCCA	0.413													14	29					0	0	0.004007	0	0
PSD	5662	broad.mit.edu	37	10	104165107	104165107	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:104165107C>T	uc001kvg.1	-	12	2849	c.2322G>A	c.(2320-2322)AGG>AGA	p.R774R	PSD_uc001kve.1_5'UTR|PSD_uc001kvf.1_Silent_p.R143R|PSD_uc001kvh.1_Silent_p.R395R|PSD_uc009xxd.1_Silent_p.R774R	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	774	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		ACATACTCTTCCTGCAGTCAG	0.672													34	82					0	0	0.002852	0	0
PSD	5662	broad.mit.edu	37	10	104174892	104174893	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:104174892_104174893GG>AA	uc001kvg.1	-	4	1378_1379	c.851_852CC>TT	c.(850-852)TCC>TTT	p.S284F	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.S284F	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	284					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		GGTCTGTCTCGGAGTACTTGGC	0.658													7	19					0	0	0.004672	0	0
CUEDC2	79004	broad.mit.edu	37	10	104183554	104183554	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:104183554C>T	uc001kvn.2	-	7	807	c.656_splice	c.e7+1	p.K219_splice	CUEDC2_uc001kvm.2_5'Flank	NM_024040	NP_076945	Q9H467	CUED2_HUMAN	CUE domain containing 2							cytoplasm|nucleus	protein binding				0		Colorectal(252;0.122)		Epithelial(162;9.17e-09)|all cancers(201;2.16e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)		cccagACTCACTTCTGCAGGA	0.527													17	21					0	0	0.004007	0	0
CYP17A1	1586	broad.mit.edu	37	10	104597026	104597026	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:104597026G>A	uc001kwg.2	-	1	265	c.93C>T	c.(91-93)CTC>CTT	p.L31L		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	31					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	GCAGGGACAGGAGGCTCTTGG	0.547													21	58					0	0	0.002299	0	0
LOC729020	729020	broad.mit.edu	37	10	105006395	105006395	+	Silent	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:105006395A>G	uc009xxi.2	+	1	752	c.642A>G	c.(640-642)AGA>AGG	p.R214R	uc001kwr.2_Intron	NM_001143909	NP_001137381	Q2QD12	Q2QD12_HUMAN	rcRPE protein	214					carbohydrate metabolic process		ribulose-phosphate 3-epimerase activity				0						ACCTATTAAGAAATATTTGCT	0.423													6	11					0	0	0.001984	0	0
SORCS3	22986	broad.mit.edu	37	10	106737200	106737200	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:106737200C>T	uc001kyi.1	+	4	1130	c.903C>T	c.(901-903)CTC>CTT	p.L301L		NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	301	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AGAGCCTGCTCTTTCATCCCA	0.458													11	34					0	0	0.001855	0	0
SORCS3	22986	broad.mit.edu	37	10	106971008	106971008	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:106971008G>A	uc001kyi.1	+	17	2602	c.2375G>A	c.(2374-2376)GGG>GAG	p.G792E	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	792	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		AACAGCACTGGGTAAGTAAAA	0.463													5	7					0	0	0.000602	0	0
TECTB	6975	broad.mit.edu	37	10	114044382	114044382	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:114044382G>A	uc001kzr.1	+	2	166	c.166G>A	c.(166-168)GGA>AGA	p.G56R		NM_058222	NP_478129	Q96PL2	TECTB_HUMAN	tectorin beta precursor	56	ZP.					anchored to membrane|plasma membrane|proteinaceous extracellular matrix					0		Colorectal(252;0.198)		Epithelial(162;0.0143)|all cancers(201;0.0242)		GCTGGCCCTCGGAGGGCTGTG	0.468													15	25					0	0	0.003163	0	0
NRAP	4892	broad.mit.edu	37	10	115350452	115350452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:115350452C>T	uc001laj.2	-	40	5005	c.4841G>A	c.(4840-4842)AGG>AAG	p.R1614K	NRAP_uc009xyb.2_Missense_Mutation_p.R367K|NRAP_uc001lak.2_Missense_Mutation_p.R1579K|NRAP_uc001lal.3_Missense_Mutation_p.R1614K	NM_198060	NP_932326	Q86VF7	NRAP_HUMAN	nebulin-related anchoring protein isoform S	1614	Nebulin 43.					fascia adherens|muscle tendon junction	actin binding|muscle alpha-actinin binding|zinc ion binding			ovary(6)|central_nervous_system(3)|upper_aerodigestive_tract(1)	10		Colorectal(252;0.0233)|Breast(234;0.188)		Epithelial(162;0.00392)|all cancers(201;0.00569)		CTGCTGGCTCCTCTTGGCCTG	0.632													20	68					0	0	0.001216	0	0
DMBT1	1755	broad.mit.edu	37	10	124377706	124377706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:124377706G>A	uc001lgk.1	+	38	4784	c.4678G>A	c.(4678-4680)GGA>AGA	p.G1560R	DMBT1_uc001lgl.1_Missense_Mutation_p.G1550R|DMBT1_uc001lgm.1_Missense_Mutation_p.G932R|DMBT1_uc009xzz.1_Missense_Mutation_p.G1560R|DMBT1_uc010qtx.1_Missense_Mutation_p.G411R|DMBT1_uc009yab.1_Missense_Mutation_p.G263R|DMBT1_uc009yac.1_5'Flank	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1560	SRCR 12.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GTCAGCCCCAGGAAATGCCCA	0.612													65	119					0	0	0.003610	0	0
OAT	4942	broad.mit.edu	37	10	126097393	126097393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:126097393G>A	uc001lhp.2	-	3	448	c.341C>T	c.(340-342)GCT>GTT	p.A114V	OAT_uc001lhq.2_RNA|OAT_uc001lhr.2_5'UTR	NM_000274	NP_000265	P04181	OAT_HUMAN	ornithine aminotransferase precursor	114					cellular amino acid biosynthetic process|visual perception	mitochondrial matrix	ornithine-oxo-acid transaminase activity|protein binding|pyridoxal phosphate binding				0		all_lung(145;0.0271)|Lung NSC(174;0.0436)|Colorectal(57;0.102)|all_neural(114;0.116)			L-Ornithine(DB00129)|Pyridoxal Phosphate(DB00114)	ATTATAGAAAGCTCTAGATGT	0.368													15	19					0	0	0.003163	0	0
C10orf137	26098	broad.mit.edu	37	10	127431743	127431743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:127431743C>T	uc001liq.1	+	18	2781	c.2488C>T	c.(2488-2490)CCA>TCA	p.P830S	C10orf137_uc001lin.2_Missense_Mutation_p.P796S|C10orf137_uc001lio.1_Missense_Mutation_p.P796S|C10orf137_uc001lip.1_Missense_Mutation_p.P534S|C10orf137_uc001lis.1_Missense_Mutation_p.P156S	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	830					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				AAGCCAAAATCCAGAACACTA	0.353													15	21					0	0	0.002450	0	0
STK32C	282974	broad.mit.edu	37	10	134021640	134021640	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:134021640C>T	uc001lle.1	-	12	1475	c.1335G>A	c.(1333-1335)CAG>CAA	p.Q445Q	STK32C_uc001lld.1_Silent_p.Q328Q|STK32C_uc010quu.1_Silent_p.Q458Q|STK32C_uc001llb.2_Silent_p.Q216Q|STK32C_uc001llc.1_RNA	NM_173575	NP_775846	Q86UX6	ST32C_HUMAN	serine/threonine kinase 32C	445							ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(2)|lung(2)|breast(1)	5		all_cancers(35;2.72e-11)|all_epithelial(44;2.33e-08)|Lung NSC(174;0.000855)|all_lung(145;0.00146)|all_neural(114;0.0299)|Breast(234;0.106)|Colorectal(31;0.112)|Melanoma(40;0.124)|Glioma(114;0.203)		Epithelial(32;3.99e-05)|all cancers(32;5.58e-05)|OV - Ovarian serous cystadenocarcinoma(35;9.96e-05)|BRCA - Breast invasive adenocarcinoma(275;0.222)		TCGGGAGGTCCTGGCTCCTCT	0.701													12	20					0	0	0.002450	0	0
LRRC27	80313	broad.mit.edu	37	10	134188633	134188633	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr10:134188633C>G	uc010quw.1	+	11	1675	c.1480C>G	c.(1480-1482)CGA>GGA	p.R494G	LRRC27_uc001llg.2_RNA|LRRC27_uc001lli.2_Missense_Mutation_p.R494G|LRRC27_uc001llj.2_Missense_Mutation_p.R432G	NM_030626	NP_085129	Q9C0I9	LRC27_HUMAN	leucine rich repeat containing 27 isoform a	494										ovary(1)	1		all_cancers(35;6.28e-08)|all_epithelial(44;6.75e-06)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)|Colorectal(31;0.19)		OV - Ovarian serous cystadenocarcinoma(35;9.12e-05)|Epithelial(32;0.000116)|all cancers(32;0.000145)|BRCA - Breast invasive adenocarcinoma(275;0.218)		CAAAGATCGTCGACGGGCGGC	0.468													10	25					0	0	0.000673	0	0
TRPM5	29850	broad.mit.edu	37	11	2436352	2436352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:2436352G>A	uc001lwm.3	-	9	1487	c.1478C>T	c.(1477-1479)GCG>GTG	p.A493V	TRPM5_uc010qxl.1_Missense_Mutation_p.A493V|TRPM5_uc009ydn.2_Missense_Mutation_p.A495V	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	493	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		CCCGCTCACCGCCCTCCTGCG	0.731													10	10					0	0	0.006214	0	0
OR52I2	143502	broad.mit.edu	37	11	4608931	4608931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:4608931G>A	uc010qyh.1	+	1	889	c.889G>A	c.(889-891)GAT>AAT	p.D297N		NM_001005170	NP_001005170	Q8NH67	O52I2_HUMAN	olfactory receptor, family 52, subfamily I,	297	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTTGGGGCAGGATGTAGTGCC	0.512													34	41					0	0	0.004878	0	0
HBG2	3048	broad.mit.edu	37	11	5275658	5275658	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:5275658T>G	uc001mai.1	-	2	616	c.179A>C	c.(178-180)AAA>ACA	p.K60T	HBG2_uc001mak.1_RNA|HBG2_uc001maj.1_Missense_Mutation_p.K60T	NM_000559	NP_000550	P69892	HBG2_HUMAN	A-gamma globin	60			K -> E (in Emirates).|K -> Q (in Sacromonte).		blood coagulation	hemoglobin complex	heme binding|oxygen binding|oxygen transporter activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.76e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TGCCTTGACTTTGGGGTTGCC	0.537													18	52					0	0	0.001786	0	0
OR51I1	390063	broad.mit.edu	37	11	5462626	5462626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:5462626G>A	uc010qze.1	-	1	119	c.119C>T	c.(118-120)TCC>TTC	p.S40F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005288	NP_001005288	Q9H343	O51I1_HUMAN	olfactory receptor, family 51, subfamily I,	40	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACCTACAATGGAGATCATGTA	0.517													22	14					0	0	0.003954	0	0
OR52H1	390067	broad.mit.edu	37	11	5566730	5566730	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:5566730G>A	uc010qzh.1	-	1	24	c.24C>T	c.(22-24)ATC>ATT	p.I8I	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	8	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGTTGAAAATGATCATGGCAG	0.433													27	22					0	0	0.001512	0	0
SYT9	143425	broad.mit.edu	37	11	7439308	7439308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:7439308C>T	uc001mfe.2	+	5	1523	c.1286C>T	c.(1285-1287)CCC>CTC	p.P429L	SYT9_uc001mfd.2_RNA|SYT9_uc009yfi.2_RNA	NM_175733	NP_783860	Q86SS6	SYT9_HUMAN	synaptotagmin IX	429	Cytoplasmic (Potential).|C2 2.					cell junction|integral to membrane|synaptic vesicle membrane	metal ion binding|transporter activity			ovary(2)|large_intestine(1)	3				Epithelial(150;1.34e-07)|LUSC - Lung squamous cell carcinoma(625;0.0949)		GATGTCCCTCCCGAGAACATT	0.478													18	25					0	0	0.002299	0	0
RIC3	79608	broad.mit.edu	37	11	8132470	8132470	+	Silent	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:8132470C>G	uc001mgd.2	-	6	939	c.885G>C	c.(883-885)TCG>TCC	p.S295S	RIC3_uc001mgb.2_Silent_p.S133S|RIC3_uc001mgc.2_Silent_p.S294S|RIC3_uc001mge.2_Silent_p.S113S|RIC3_uc010rbl.1_Silent_p.S245S|RIC3_uc010rbm.1_Silent_p.S323S|RIC3_uc009yfm.2_Silent_p.S214S|RIC3_uc009yfn.2_Silent_p.S98S	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	295	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		TTGGATCACACGAGGTAACAG	0.473													33	30					0	0	0.002836	0	0
SPON1	10418	broad.mit.edu	37	11	14284296	14284296	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:14284296G>A	uc001mle.2	+	16	2573	c.2035G>A	c.(2035-2037)GAA>AAA	p.E679K		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	679	TSP type-1 5.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		CCAGTGGTCGGAATGTAACAA	0.527													12	10					0	0	0.001368	0	0
TPH1	7166	broad.mit.edu	37	11	18047183	18047183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:18047183G>A	uc001mnp.2	-	7	895	c.869C>T	c.(868-870)TCC>TTC	p.S290F	TPH1_uc009yhe.2_RNA	NM_004179	NP_004170	P17752	TPH1_HUMAN	tryptophan hydroxylase 1	290					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity				0					L-Tryptophan(DB00150)|Tetrahydrobiopterin(DB00360)	AATTTCTTGGGAGAATTGGGC	0.463													27	19					0	0	0.006320	0	0
DBX1	120237	broad.mit.edu	37	11	20177857	20177857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:20177857G>A	uc001mpw.1	-	4	1052	c.1052C>T	c.(1051-1053)TCG>TTG	p.S351L		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	312					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						GTGCGCGGGCGAGGGGGGCAG	0.701													13	11					0	0	0.001368	0	0
SLC17A6	57084	broad.mit.edu	37	11	22396394	22396394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:22396394C>T	uc001mqk.2	+	9	1548	c.1135C>T	c.(1135-1137)CTT>TTT	p.L379F		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	379	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						CAAGCAGATTCTTTCAACTAC	0.383													44	44					0	0	0.002222	0	0
NAT10	55226	broad.mit.edu	37	11	34152950	34152950	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:34152950C>T	uc001mvk.2	+	14	1636	c.1392C>T	c.(1390-1392)TCC>TCT	p.S464S	NAT10_uc010ren.1_Silent_p.S392S	NM_024662	NP_078938	Q9H0A0	NAT10_HUMAN	N-acetyltransferase 10 isoform a	464						nucleolus	ATP binding|N-acetyltransferase activity|protein binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(5;0.0119)|all_hematologic(20;0.0231)				ATGAGGTTTCCCTCCAGGAGT	0.463													18	16					0	0	0.001523	0	0
OR4A15	81328	broad.mit.edu	37	11	55135918	55135918	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:55135918C>T	uc010rif.1	+	1	559	c.559C>T	c.(559-561)CAA>TAA	p.Q187*		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	187	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						CTCATTGGTTCAATTTCTCTT	0.423													35	79					0	0	0.004289	0	0
OR5D13	390142	broad.mit.edu	37	11	55541213	55541213	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:55541213C>T	uc010ril.1	+	1	300	c.300C>T	c.(298-300)ATC>ATT	p.I100I		NM_001001967	NP_001001967	Q8NGL4	OR5DD_HUMAN	olfactory receptor, family 5, subfamily D,	100	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3		all_epithelial(135;0.196)				CTGGTTGCATCATGCAATTTT	0.408													24	64					0	0	0.003330	0	0
OR5D14	219436	broad.mit.edu	37	11	55563136	55563136	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:55563136C>T	uc010rim.1	+	1	105	c.105C>T	c.(103-105)CTC>CTT	p.L35L		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TGTTTCTGCTCATGTATGTTA	0.403													29	50					0	0	0.007291	0	0
OR5D18	219438	broad.mit.edu	37	11	55587751	55587751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:55587751C>T	uc010rin.1	+	1	646	c.646C>T	c.(646-648)CTC>TTC	p.L216F		NM_001001952	NP_001001952	Q8NGL1	OR5DI_HUMAN	olfactory receptor, family 5, subfamily D,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.208)				ACTCATCGTTCTCACATCTTA	0.483													21	42					0	0	0.003330	0	0
OR8H2	390151	broad.mit.edu	37	11	55873109	55873109	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:55873109C>T	uc010riy.1	+	1	591	c.591C>T	c.(589-591)ATC>ATT	p.I197I		NM_001005200	NP_001005200	Q8N162	OR8H2_HUMAN	olfactory receptor, family 8, subfamily H,	197	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	Esophageal squamous(21;0.00693)					ACACCGAAATCCTGATATTCA	0.388										HNSCC(53;0.14)			26	70					0	0	0.003954	0	0
OR8J3	81168	broad.mit.edu	37	11	55904565	55904565	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:55904565G>A	uc010riz.1	-	1	630	c.630C>T	c.(628-630)TCC>TCT	p.S210S		NM_001004064	NP_001004064	Q8NGG0	OR8J3_HUMAN	olfactory receptor, family 8, subfamily J,	210	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Esophageal squamous(21;0.00693)					CTGTAATCATGGAAAAAACCA	0.358													22	49					0	0	0.001882	0	0
OR5T2	219464	broad.mit.edu	37	11	55999754	55999754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:55999754G>A	uc010rjc.1	-	1	908	c.908C>T	c.(907-909)TCC>TTC	p.S303F		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	303	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AGCATAGCTGGAACTTGGTCT	0.428													23	52					0	0	0.002780	0	0
OR5R1	219479	broad.mit.edu	37	11	56185322	56185322	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:56185322G>A	uc010rji.1	-	1	387	c.387C>T	c.(385-387)CCC>CCT	p.P129P		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AATAATGCAGGGGACTACAGA	0.468													25	39					0	0	0.003954	0	0
OR5M9	390162	broad.mit.edu	37	11	56230376	56230376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:56230376C>T	uc010rjj.1	-	1	502	c.502G>A	c.(502-504)GGA>AGA	p.G168R		NM_001004743	NP_001004743	Q8NGP3	OR5M9_HUMAN	olfactory receptor, family 5, subfamily M,	168	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					TCAAAGTTTCCACAGAAGTAT	0.428													10	22					0	0	0.000673	0	0
OR5M11	219487	broad.mit.edu	37	11	56310298	56310298	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:56310298A>T	uc010rjl.1	-	1	436	c.436T>A	c.(436-438)TTT>ATT	p.F146I		NM_001005245	NP_001005245	Q96RB7	OR5MB_HUMAN	olfactory receptor, family 5, subfamily M,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACATAGGGAAATGTGGCCAAG	0.517													6	17					0	0	0.001168	0	0
OR9G9	504191	broad.mit.edu	37	11	56468463	56468463	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:56468463C>T	uc010rjn.1	+	1	600	c.600C>T	c.(598-600)TTC>TTT	p.F200F		NM_001013358	NP_001013376	P0C7N8	OR9G9_HUMAN	olfactory receptor, family 9, subfamily G,	200	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGATGTACTTCCTGCTGGCCT	0.512													14	83					0	0	0.002450	0	0
OR1S2	219958	broad.mit.edu	37	11	57971029	57971029	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:57971029C>T	uc010rkb.1	-	1	625	c.625G>A	c.(625-627)GAG>AAG	p.E209K		NM_001004459	NP_001004459	Q8NGQ3	OR1S2_HUMAN	olfactory receptor, family 1, subfamily S,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.0589)				AACACAAGCTCATTGATCATT	0.443													23	46					0	0	0.002780	0	0
GLYATL2	219970	broad.mit.edu	37	11	58605776	58605776	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:58605776G>A	uc001nnd.3	-	3	275	c.144C>T	c.(142-144)GCC>GCT	p.A48A	GLYATL2_uc009ymq.2_Silent_p.A48A	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	48						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	AATCTGGCCAGGCATCTACCA	0.458													14	35					0	0	0.002450	0	0
DTX4	23220	broad.mit.edu	37	11	58949292	58949292	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:58949292G>C	uc001nns.2	+	2	549	c.292G>C	c.(292-294)GAC>CAC	p.D98H	DTX4_uc001nnr.2_5'UTR	NM_015177	NP_055992	Q9Y2E6	DTX4_HUMAN	deltex 4 homolog	98	WWE 2.				Notch signaling pathway	cytoplasm	zinc ion binding			lung(2)|central_nervous_system(1)	3		all_epithelial(135;0.125)				GTGGGAGAACGACAATGGCTC	0.617													15	46					0	0	0.002450	0	0
OR5A2	219981	broad.mit.edu	37	11	59190041	59190041	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:59190041T>C	uc010rkt.1	-	1	386	c.386A>G	c.(385-387)AAC>AGC	p.N129S		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AAGCAAGGGGTTGCAGATTGC	0.478													9	18					0	0	0.006214	0	0
OR4D6	219983	broad.mit.edu	37	11	59224926	59224926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:59224926C>T	uc010rku.1	+	1	493	c.493C>T	c.(493-495)CCA>TCA	p.P165S		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	165	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCTGATGCTTCCATTCCCCTT	0.502													33	64					0	0	0.002836	0	0
MS4A2	2206	broad.mit.edu	37	11	59861437	59861437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:59861437G>A	uc001nop.2	+	6	640	c.538G>A	c.(538-540)GAA>AAA	p.E180K	MS4A2_uc009ymu.2_3'UTR	NM_000139	NP_000130	Q01362	FCERB_HUMAN	membrane-spanning 4-domains, subfamily A, member	180	Extracellular (Potential).				cell proliferation|humoral immune response	integral to plasma membrane	calcium channel activity			ovary(1)	1		all_epithelial(135;0.245)			Omalizumab(DB00043)	TGTTCAATAGGAAATTGTAGT	0.413													7	23					0	0	0.004482	0	0
Unknown	0	broad.mit.edu	37	11	59997464	59997465	+	RNA	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:59997464_59997465CC>TT	uc001nov.2	-	1		c.80_81GG>AA			uc001now.2_RNA|uc001nox.2_Missense_Mutation_p.G22K|uc001noy.2_Missense_Mutation_p.G22K|uc009ymw.2_Missense_Mutation_p.G22K					Homo sapiens mRNA for hypothetical protein, partial cds, clone:Hsa11-digit17-05-01-R.																		ATCTATGTTTCCCAGCTGGGGC	0.446													7	21					0	0	0.004672	0	0
MS4A10	341116	broad.mit.edu	37	11	60559780	60559780	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:60559780T>A	uc001npz.1	+	4	442	c.346T>A	c.(346-348)TCT>ACT	p.S116T		NM_206893	NP_996776	Q96PG2	M4A10_HUMAN	membrane-spanning 4-domains, subfamily A, member	116	Cytoplasmic (Potential).					integral to membrane	receptor activity			ovary(1)|skin(1)	2						GAAGACCTTTTCTAAAACTTA	0.443													29	80					0	0	0.005524	0	0
DAGLA	747	broad.mit.edu	37	11	61488326	61488326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:61488326C>T	uc001nsa.2	+	3	382	c.271C>T	c.(271-273)CGT>TGT	p.R91C		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	91	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		CACGGAGCCCCGTGACTCCAT	0.602													18	24					0	0	0.001882	0	0
EML3	256364	broad.mit.edu	37	11	62378444	62378444	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:62378444G>A	uc001ntu.1	-	4	781	c.473C>T	c.(472-474)TCC>TTC	p.S158F	EML3_uc001ntr.1_Missense_Mutation_p.S130F|EML3_uc001nts.1_Missense_Mutation_p.S130F|EML3_uc001ntt.1_Intron|EML3_uc010rly.1_Missense_Mutation_p.S158F|EML3_uc009yny.1_5'UTR|ROM1_uc001ntv.2_5'Flank	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	158	Poly-Ser.					cytoplasm|microtubule	protein binding			ovary(1)	1						GGATGAGGAGGAGGAAGAATT	0.612													10	17					0	0	0.000673	0	0
EML3	256364	broad.mit.edu	37	11	62378722	62378723	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:62378722_62378723GG>AA	uc001ntu.1	-	3	596_597	c.288_289CC>TT	c.(286-291)TCCCCT>TCTTCT	p.P97S	EML3_uc001ntr.1_Missense_Mutation_p.P69S|EML3_uc001nts.1_Missense_Mutation_p.P69S|EML3_uc001ntt.1_5'UTR|EML3_uc010rly.1_Missense_Mutation_p.P97S|EML3_uc009yny.1_5'UTR|ROM1_uc001ntv.2_5'Flank	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	97						cytoplasm|microtubule	protein binding			ovary(1)	1						GGGGGTCCAGGGGATGACTTGA	0.673													12	21					0	0	0.004672	0	0
ZBTB3	79842	broad.mit.edu	37	11	62520256	62520257	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:62520256_62520257GG>AA	uc001nuz.2	-	2	1152_1153	c.1030_1031CC>TT	c.(1030-1032)CCA>TTA	p.P344L		NM_024784	NP_079060	Q9H5J0	ZBTB3_HUMAN	zinc finger and BTB domain containing 3	344	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3						Agctggggctggagcctgggat	0.317													17	29					0	0	0.004672	0	0
SLC22A6	9356	broad.mit.edu	37	11	62752030	62752030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:62752030G>A	uc001nwk.2	-	1	440	c.133C>T	c.(133-135)CCT>TCT	p.P45S	SLC22A6_uc001nwl.2_Missense_Mutation_p.P45S|SLC22A6_uc001nwj.2_Missense_Mutation_p.P45S|SLC22A6_uc001nwm.2_Missense_Mutation_p.P45S	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	45	Extracellular (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						TGGTGGGTAGGGATGGCAGCA	0.667													3	14					0	0	0.004672	0	0
SLC22A25	387601	broad.mit.edu	37	11	62997106	62997106	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:62997106G>A	uc001nwr.1	-	1	19	c.19C>T	c.(19-21)CTA>TTA	p.L7L	SLC22A10_uc010rmo.1_Intron|SLC22A25_uc009yoq.1_RNA|SLC22A25_uc001nws.1_RNA|SLC22A25_uc001nwt.1_Silent_p.L7L	NM_199352	NP_955384	Q6T423	S22AP_HUMAN	putative UST1-like organic anion transporter	7	Cytoplasmic (Potential).				transmembrane transport	integral to membrane				ovary(3)|skin(1)	4						ACTTGATCTAGGAGGTCCTGA	0.423													19	22					0	0	0.007413	0	0
LGALS12	85329	broad.mit.edu	37	11	63273993	63273993	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:63273993C>T	uc001nxa.2	+	1	470	c.129C>T	c.(127-129)TTC>TTT	p.F43F	LGALS12_uc001nxb.2_Silent_p.F43F|LGALS12_uc001nxc.2_Silent_p.F43F|LGALS12_uc001nxd.2_5'Flank|LGALS12_uc001nxe.2_5'Flank|LGALS12_uc009yot.2_5'Flank	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	43					apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						CACCAGTCTTCCACCCGGTGA	0.552													26	71					0	0	0.003271	0	0
NAA40	79829	broad.mit.edu	37	11	63714427	63714427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:63714427G>A	uc009yoz.2	+	3	234	c.107G>A	c.(106-108)GGA>GAA	p.G36E	NAA40_uc010rmw.1_Intron|NAA40_uc010rmx.1_Missense_Mutation_p.G15E	NM_024771	NP_079047	Q86UY6	NAA40_HUMAN	N-acetyltransferase 11	36							N-acetyltransferase activity				0						CCACAGCTTGGAGACCCTCTG	0.512													24	43					0	0	0.002096	0	0
SLC22A12	116085	broad.mit.edu	37	11	64360946	64360946	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:64360946C>T	uc001oam.1	+	3	1323	c.576C>T	c.(574-576)TTC>TTT	p.F192F	SLC22A12_uc009ypr.1_Silent_p.F192F|SLC22A12_uc001oal.1_Intron|SLC22A12_uc009yps.1_Intron|SLC22A12_uc001oan.1_Intron|SLC22A12_uc009ypt.2_Silent_p.F10F	NM_144585	NP_653186	Q96S37	S22AC_HUMAN	urate anion exchanger 1 isoform a	192	Helical; (Potential).				cellular homeostasis|response to drug|urate metabolic process	apical plasma membrane|brush border membrane|integral to membrane	PDZ domain binding|urate transmembrane transporter activity			ovary(1)	1						CAGCTGCCTTCGCCCCTGCCT	0.612													20	26					0	0	0.001523	0	0
CDCA5	113130	broad.mit.edu	37	11	64847068	64847068	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:64847068G>A	uc001ocp.2	-	5	600	c.435C>T	c.(433-435)TCC>TCT	p.S145S		NM_080668	NP_542399	Q96FF9	CDCA5_HUMAN	cell division cycle associated 5	145					cell division|double-strand break repair|G1/S transition of mitotic cell cycle|mitotic chromosome condensation|mitotic metaphase plate congression|mitotic sister chromatid cohesion|regulation of cohesin localization to chromatin	cytoplasm|nuclear chromatin|plasma membrane	chromatin binding|identical protein binding				0						GCCGGCTGTAGGAACGCCTGA	0.632													5	15					0	0	0.001984	0	0
CD248	57124	broad.mit.edu	37	11	66083162	66083162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:66083162G>A	uc001ohm.1	-	1	1354	c.1337C>T	c.(1336-1338)TCC>TTC	p.S446F		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	446	Pro-rich.|Extracellular (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	CCGGGTGACGGAGAGCACTGA	0.657													37	71					0	0	0.005524	0	0
SYT12	91683	broad.mit.edu	37	11	66813297	66813298	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:66813297_66813298CC>TT	uc009yrl.2	+	7	1271_1272	c.1041_1042CC>TT	c.(1039-1044)AACCCG>AATTCG	p.P348S	SYT12_uc001oju.2_Missense_Mutation_p.P348S	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	348	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						ATGACCCCAACCCGGTGTTCAA	0.614													18	21					0	0	0.004672	0	0
RHOD	29984	broad.mit.edu	37	11	66838906	66838906	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:66838906G>A	uc001ojv.2	+	5	551	c.466G>A	c.(466-468)GGC>AGC	p.G156S		NM_014578	NP_055393	O00212	RHOD_HUMAN	ras homolog D precursor	156					regulation of small GTPase mediated signal transduction|Rho protein signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity				0						CTCCCTCTAGGGCCAGGAGAT	0.672													11	22					0	0	0.000673	0	0
KDM2A	22992	broad.mit.edu	37	11	67012770	67012770	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:67012770C>T	uc001ojw.2	+	14	2538	c.1674C>T	c.(1672-1674)TCC>TCT	p.S558S	KDM2A_uc001ojx.2_RNA|KDM2A_uc001ojy.2_Silent_p.S252S|KDM2A_uc010rpn.1_Silent_p.S119S|KDM2A_uc001ojz.1_Silent_p.S16S	NM_012308	NP_036440	Q9Y2K7	KDM2A_HUMAN	F-box and leucine-rich repeat protein 11	558					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|zinc ion binding			ovary(4)|lung(3)|breast(1)|skin(1)	9						CTGCTGCCTCCCCGATTGTGT	0.557													31	45					0	0	0.001786	0	0
PITPNM1	9600	broad.mit.edu	37	11	67262362	67262362	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:67262362G>A	uc001olx.2	-	17	2886	c.2697C>T	c.(2695-2697)TTC>TTT	p.F899F	PITPNM1_uc001olw.2_Silent_p.F181F|PITPNM1_uc001oly.2_Silent_p.F899F|PITPNM1_uc001olz.2_Silent_p.F898F	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	899					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						TCTCCCTGGGGAAGGCCGGGC	0.672													39	54					0	0	0.002522	0	0
LRP5	4041	broad.mit.edu	37	11	68216526	68216527	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:68216526_68216527GG>AA	uc001ont.2	+	23	4911_4912	c.4836_4837GG>AA	c.(4834-4839)ACGGAC>ACAAAC	p.D1613N	LRP5_uc009ysg.2_Missense_Mutation_p.D1023N	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	1613	Cytoplasmic (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						CCCCCTGCACGGACTCATCCTG	0.535													11	32					0	0	0.004672	0	0
TPCN2	219931	broad.mit.edu	37	11	68854621	68854621	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:68854621C>T	uc001oos.2	+	24	2243	c.2127C>T	c.(2125-2127)CCC>CCT	p.P709P	TPCN2_uc010rqg.1_Silent_p.P527P|TPCN2_uc001oot.2_RNA	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	709	Cytoplasmic (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			ACCTGCAGCCCCTTGCTGGGA	0.637													5	22					0	0	0.001168	0	0
SHANK2	22941	broad.mit.edu	37	11	70331925	70331925	+	Silent	SNP	G	A	A	rs140434354		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:70331925G>A	uc001oqc.2	-	21	4551	c.4473C>T	c.(4471-4473)ATC>ATT	p.I1491I	SHANK2_uc010rqn.1_Silent_p.I903I|SHANK2_uc001opz.2_Silent_p.I896I|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1112					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CCACCTCCTCGATCCCAGAGT	0.592													13	22					0	0	0.003163	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73022807	73022807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:73022807C>T	uc001otu.2	+	1	3145	c.3124C>T	c.(3124-3126)CCC>TCC	p.P1042S		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1042	Pro-rich.				actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						TGAGGCCAAGCCCCCTGAGGC	0.642													5	19					0	0	0.001168	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73073629	73073629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:73073629G>A	uc001otu.2	+	14	4867	c.4846G>A	c.(4846-4848)GGC>AGC	p.G1616S		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	1616					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						TGCAGGCTCGGGCTTGGAGAT	0.706													7	19					0	0	0.003080	0	0
C2CD3	26005	broad.mit.edu	37	11	73789508	73789508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:73789508G>A	uc001ouu.2	-	23	4482	c.4255C>T	c.(4255-4257)CAT>TAT	p.H1419Y	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1419						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					AGCACACAATGGATGGGCAGC	0.498													11	25					0	0	0.000978	0	0
NEU3	10825	broad.mit.edu	37	11	74716515	74716515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:74716515C>T	uc001ovw.2	+	3	520	c.364C>T	c.(364-366)CCC>TCC	p.P122S	NEU3_uc001ovv.2_Missense_Mutation_p.P112S|NEU3_uc010rrl.1_Missense_Mutation_p.P13S	NM_006656	NP_006647	A8K327	A8K327_HUMAN	sialidase 3	122										ovary(2)	2						GACCATGAACCCCTGTCCTGT	0.537													13	10					0	0	0.001368	0	0
C11orf30	56946	broad.mit.edu	37	11	76256911	76256911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:76256911C>T	uc001oxl.2	+	20	3487	c.3344C>T	c.(3343-3345)ACA>ATA	p.T1115I	C11orf30_uc001oxm.2_Missense_Mutation_p.T1017I|C11orf30_uc010rsb.1_Missense_Mutation_p.T1130I|C11orf30_uc010rsc.1_Missense_Mutation_p.T1116I|C11orf30_uc001oxn.2_Missense_Mutation_p.T1116I|C11orf30_uc010rsd.1_Missense_Mutation_p.T1024I|C11orf30_uc010rse.1_Missense_Mutation_p.T362I|C11orf30_uc001oxp.2_Intron	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	1115					chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						CAGCCTCCCACAGTTACAAAG	0.463													11	31					0	0	0.001368	0	0
MYO7A	4647	broad.mit.edu	37	11	76870559	76870559	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:76870559C>T	uc001oyb.2	+	10	1342	c.1070C>T	c.(1069-1071)TCC>TTC	p.S357F	MYO7A_uc010rsl.1_Missense_Mutation_p.S357F|MYO7A_uc010rsm.1_Missense_Mutation_p.S346F|MYO7A_uc001oyc.2_Missense_Mutation_p.S357F	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	357	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity	p.S357S(1)		ovary(3)|breast(1)	4						ACAGCTGCATCCCTGCTTGAG	0.572													26	37					0	0	0.001512	0	0
MYO7A	4647	broad.mit.edu	37	11	76910664	76910665	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:76910664_76910665GG>AA	uc001oyb.2	+	35	4925_4926	c.4653_4654GG>AA	c.(4651-4656)GCGGGG>GCAAGG	p.G1552R	MYO7A_uc010rsm.1_Intron|MYO7A_uc001oyc.2_Intron|MYO7A_uc009yus.1_Intron|MYO7A_uc009yut.1_Intron	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1552	FERM 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						TGACCCCGGCGGGGCCCTGTTC	0.639													4	5					0	0	0.004672	0	0
MYO7A	4647	broad.mit.edu	37	11	76910695	76910695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:76910695G>A	uc001oyb.2	+	35	4956	c.4684G>A	c.(4684-4686)GGA>AGA	p.G1562R	MYO7A_uc010rsm.1_Missense_Mutation_p.G1513R|MYO7A_uc001oyc.2_Missense_Mutation_p.G1524R|MYO7A_uc009yus.1_RNA|MYO7A_uc009yut.1_Missense_Mutation_p.G735R	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	1562	FERM 1.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GTCCTGCAGGGGAGCGAAAAC	0.632													6	6					0	0	0.001984	0	0
CCDC81	60494	broad.mit.edu	37	11	86131096	86131096	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:86131096G>A	uc001pbx.1	+	14	2245	c.1817_splice	c.e14+1	p.R606_splice	CCDC81_uc001pbw.1_Splice_Site_p.R516_splice|CCDC81_uc010rtq.1_Splice_Site_p.R389_splice|CCDC81_uc001pby.1_Splice_Site_p.R341_splice	NM_001156474	NP_001149946	Q6ZN84	CCD81_HUMAN	coiled-coil domain containing 81 isoform 1											skin(1)	1		Acute lymphoblastic leukemia(157;5.51e-06)|all_hematologic(158;0.00535)				CTTTTGAACGGTAATGCCTGA	0.348													19	40					0	0	0.001216	0	0
FAT3	120114	broad.mit.edu	37	11	92531158	92531158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:92531158C>T	uc001pdj.3	+	9	4996	c.4979C>T	c.(4978-4980)TCC>TTC	p.S1660F		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1660	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTGCGCATTTCCGTCACCATG	0.438										TCGA Ovarian(4;0.039)			126	274					0	0	0.003610	0	0
KDM4D	55693	broad.mit.edu	37	11	94731693	94731693	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:94731693C>T	uc001pfe.2	+	3	1989	c.1157C>T	c.(1156-1158)CCT>CTT	p.P386L		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	386					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CGGCATTCCCCTTGGCCTATG	0.642													6	11					0	0	0.001984	0	0
ATM	472	broad.mit.edu	37	11	108139249	108139249	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:108139249C>T	uc001pkb.1	+	18	3136	c.2751C>T	c.(2749-2751)TCC>TCT	p.S917S	ATM_uc009yxr.1_Silent_p.S917S|ATM_uc009yxs.1_RNA	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	917					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		ATACTGTGTCCTTTAGGGCAG	0.398			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			44	19					0	0	0.003610	0	0
NCAM1	4684	broad.mit.edu	37	11	113103520	113103520	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:113103520C>T	uc009yyq.1	+	13	1924	c.1230C>T	c.(1228-1230)TTC>TTT	p.F410F		NM_001076682	NP_001070150	P13591	NCAM1_HUMAN	neural cell adhesion molecule 1 isoform 3	502	Extracellular (Potential).				axon guidance|interferon-gamma-mediated signaling pathway	anchored to membrane|extracellular region|Golgi membrane|integral to membrane				ovary(1)	1		all_cancers(61;5.82e-19)|all_epithelial(67;6.87e-12)|Melanoma(852;1.99e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;0.00119)|Breast(348;0.0109)|all_neural(223;0.0299)|Medulloblastoma(222;0.0458)|Renal(330;0.198)|Prostate(24;0.207)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.000114)|all cancers(92;0.000467)|OV - Ovarian serous cystadenocarcinoma(223;0.212)		CCTTGGAATTCATCCTTGTTC	0.498													15	11					0	0	0.007413	0	0
CEP164	22897	broad.mit.edu	37	11	117251344	117251344	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:117251344G>A	uc001prc.2	+	12	1479	c.1332G>A	c.(1330-1332)CTG>CTA	p.L444L	CEP164_uc001prb.2_Silent_p.L444L|CEP164_uc010rxk.1_Silent_p.L418L|CEP164_uc001prf.2_RNA|CEP164_uc009yzp.1_RNA	NM_014956	NP_055771	Q9UPV0	CE164_HUMAN	centrosomal protein 164kDa	444					cell division|DNA repair|G2/M transition of mitotic cell cycle|mitosis	centriole|cytosol|nucleus				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;4e-05)|Epithelial(105;0.0008)		AGCAACCACTGGGAATAGAAG	0.537													5	6					0	0	0.001168	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117779500	117779500	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:117779500C>T	uc001prs.1	-	9	1203	c.1110_splice	c.e9-1	p.V370_splice	TMPRSS13_uc009yzr.1_Splice_Site_p.V49_splice|TMPRSS13_uc001prt.1_Splice_Site_p.V49_splice|TMPRSS13_uc001pru.1_Intron	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13						proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		CTCCCGGGTCCTGCAAGAGCC	0.582													11	5					0	0	0.003163	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117789427	117789427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:117789427G>A	uc001prs.1	-	2	241	c.148C>T	c.(148-150)CCT>TCT	p.P50S	TMPRSS13_uc009yzr.1_5'UTR|TMPRSS13_uc001prt.1_5'UTR|TMPRSS13_uc001pru.1_Missense_Mutation_p.P50S	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	50	4 X 5 AA repeats of T-P-P-G-R.|Ala-rich.|2-3.|Cytoplasmic (Potential).|12 X 5 AA repeats of A-S-P-A-[GLQR].				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		CGGCCCGGAGGTGTCCCAGCT	0.682													11	14					0	0	0.000673	0	0
MLL	4297	broad.mit.edu	37	11	118373665	118373665	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:118373665C>T	uc001pta.2	+	27	7072	c.7049C>T	c.(7048-7050)TCC>TTC	p.S2350F	MLL_uc001ptb.2_Missense_Mutation_p.S2353F	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2350					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		AAAATCGGCTCCTTTGCTGAA	0.468			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								22	19					0	0	0.005443	0	0
POU2F3	25833	broad.mit.edu	37	11	120187960	120187960	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:120187960G>A	uc001pxc.2	+	12	1260	c.1158G>A	c.(1156-1158)GGG>GGA	p.G386G	POU2F3_uc010rzk.1_Silent_p.G340G|POU2F3_uc010rzl.1_Silent_p.G316G|POU2F3_uc001pxe.1_Silent_p.G171G|POU2F3_uc001pxf.1_RNA	NM_014352	NP_055167	Q9UKI9	PO2F3_HUMAN	POU transcription factor	386	Ser-rich.				negative regulation by host of viral transcription	cytoplasm	sequence-specific DNA binding			ovary(1)|skin(1)	2		Breast(109;0.0011)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.0831)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;6.85e-06)		GTTCCCCTGGGAACAACAGCA	0.547													16	27					0	0	0.006122	0	0
OR10G7	390265	broad.mit.edu	37	11	123909529	123909529	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:123909529G>A	uc001pzq.1	-	1	180	c.180C>T	c.(178-180)TTC>TTT	p.F60F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	60	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GGTTGGTGAGGAAGTAGTACA	0.542													9	33					0	0	0.001855	0	0
OR8B12	219858	broad.mit.edu	37	11	124413323	124413323	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:124413323G>A	uc010sam.1	-	1	228	c.228C>T	c.(226-228)ATC>ATT	p.I76I		NM_001005195	NP_001005195	Q8NGG6	OR8BC_HUMAN	olfactory receptor, family 8, subfamily B,	76	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0213)		TTTTGGGAGTGATGGTAGTGG	0.428													10	14					0	0	0.006214	0	0
HEPACAM	220296	broad.mit.edu	37	11	124794925	124794925	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:124794925C>T	uc001qbk.2	-	2	532	c.126G>A	c.(124-126)CTG>CTA	p.L42L	HEPACAM_uc009zbj.2_5'Flank|HEPACAM_uc001qbl.1_Silent_p.L42L	NM_152722	NP_689935	Q14CZ8	HECAM_HUMAN	hepatocyte cell adhesion molecule precursor	42	Extracellular (Potential).|Ig-like V-type.				cell adhesion|cell cycle arrest|regulation of growth	cytoplasm|integral to membrane				pancreas(1)	1	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.54e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0308)		TGCCATGGATCAGGCGCACGG	0.617													11	9					0	0	0.000978	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130341230	130341230	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr11:130341230G>T	uc010scd.1	+	7	2030	c.2030G>T	c.(2029-2031)GGA>GTA	p.G677V		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	677	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		GTGTGTGGGGGAGACAATAAG	0.572													12	24					4.14922e-12	5.04707e-12	0.004007	1	0
CACNA1C	775	broad.mit.edu	37	12	2224674	2224674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:2224674C>T	uc009zdu.1	+	2	647	c.334C>T	c.(334-336)CCC>TCC	p.P112S	CACNA1C_uc009zdv.1_Missense_Mutation_p.P112S|CACNA1C_uc001qkb.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkc.2_Missense_Mutation_p.P112S|CACNA1C_uc001qke.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkf.2_Missense_Mutation_p.P112S|CACNA1C_uc001qjz.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkd.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkg.2_Missense_Mutation_p.P112S|CACNA1C_uc009zdw.1_Missense_Mutation_p.P112S|CACNA1C_uc001qkh.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkl.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkn.2_Missense_Mutation_p.P112S|CACNA1C_uc001qko.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkp.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkr.2_Missense_Mutation_p.P112S|CACNA1C_uc001qku.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkq.2_Missense_Mutation_p.P112S|CACNA1C_uc001qks.2_Missense_Mutation_p.P112S|CACNA1C_uc001qkt.2_Missense_Mutation_p.P112S	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	112	Cytoplasmic (Potential).|I.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CCTGAAGAACCCCATCCGGAG	0.637													8	31					0	0	0.006214	0	0
VWF	7450	broad.mit.edu	37	12	6125316	6125316	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:6125316G>A	uc001qnn.1	-	31	5644	c.5394C>T	c.(5392-5394)ATC>ATT	p.I1798I	VWF_uc010set.1_Intron	NM_000552	NP_000543	P04275	VWF_HUMAN	von Willebrand factor preproprotein	1798	VWFA 3; main binding site for collagens type I and III.				blood coagulation, intrinsic pathway|cell-substrate adhesion|platelet activation|platelet degranulation|protein homooligomerization	endoplasmic reticulum|platelet alpha granule lumen|proteinaceous extracellular matrix|Weibel-Palade body	chaperone binding|collagen binding|glycoprotein binding|immunoglobulin binding|integrin binding|protease binding|protein homodimerization activity|protein N-terminus binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|haematopoietic_and_lymphoid_tissue(1)|breast(1)	12					Antihemophilic Factor(DB00025)	CCGTGACCAGGATGACCACCG	0.552													13	15					0	0	0.001855	0	0
GPR162	27239	broad.mit.edu	37	12	6933459	6933459	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:6933459A>G	uc001qqw.1	+	2	930	c.395A>G	c.(394-396)AAG>AGG	p.K132R	GPR162_uc010sfn.1_Missense_Mutation_p.K132R|GPR162_uc001qqx.1_Intron|GPR162_uc009zfd.1_Intron|GPR162_uc001qqy.1_5'Flank	NM_019858	NP_062832	Q16538	GP162_HUMAN	G protein-coupled receptor 162 isoform 2	132	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						AACGCCAAGAAGCAGGCACTG	0.622													12	9					0	0	0.001368	0	0
CD163L1	283316	broad.mit.edu	37	12	7556243	7556243	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:7556243C>T	uc001qsy.2	-	6	1322	c.1296G>A	c.(1294-1296)TGG>TGA	p.W432*	CD163L1_uc010sge.1_Nonsense_Mutation_p.W442*	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	432	SRCR 4.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						TGCTGTTTATCCAAATGTCTC	0.463													15	34					0	0	0.003163	0	0
PZP	5858	broad.mit.edu	37	12	9356430	9356430	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:9356430C>T	uc001qvl.2	-	2	230	c.201G>A	c.(199-201)AGG>AGA	p.R67R	PZP_uc009zgl.2_5'UTR	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TCCTGTTTTCCCTGCCAGACT	0.562													25	13					0	0	0.005443	0	0
KLRK1	22914	broad.mit.edu	37	12	10539580	10539580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:10539580C>T	uc009zhj.2	-	3	234	c.70G>A	c.(70-72)GAT>AAT	p.D24N	uc001qya.1_Intron|KLRK1_uc001qyb.2_RNA|KLRK1_uc001qyc.2_Missense_Mutation_p.D24N|KLRK1_uc009zhk.2_Missense_Mutation_p.D24N|KLRK1_uc001qyd.2_Missense_Mutation_p.D24N	NM_007360	NP_031386	P26718	NKG2D_HUMAN	NKG2-D type II integral membrane protein	24	Cytoplasmic (Potential).				natural killer cell activation|T cell costimulation	integral to plasma membrane	sugar binding				0						TTCTTCAGATCCAAGTTATAA	0.338													8	5					0	0	0.006214	0	0
PRB1	5542	broad.mit.edu	37	12	11506501	11506501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:11506501G>A	uc001qzw.1	-	4	573	c.536C>T	c.(535-537)CCA>CTA	p.P179L	PRB1_uc001qzu.1_Intron|PRB1_uc001qzv.1_Intron	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	240	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|10.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele S).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGTCCTTGTGGCTTTCCTGG	0.602													50	29					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546356	11546356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:11546356C>T	uc010shk.1	-	3	691	c.656G>A	c.(655-657)GGA>GAA	p.G219E		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTGGCTTTCCTGGAGGTGG	0.607													46	52					0	0	0.003610	0	0
MGP	4256	broad.mit.edu	37	12	15035186	15035186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:15035186C>T	uc001rcn.1	-	4	302	c.199G>A	c.(199-201)GAG>AAG	p.E67K		NM_000900	NP_000891	P08493	MGP_HUMAN	matrix Gla protein precursor	67	Gla.				cartilage condensation|cell differentiation|ossification|regulation of bone mineralization	proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent|structural constituent of bone			ovary(1)	1						CTATTGAGCTCGTGGACAGGC	0.448													95	69					0	0	0.003610	0	0
RERGL	79785	broad.mit.edu	37	12	18234224	18234224	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:18234224C>T	uc001rdq.2	-	6	713	c.519G>A	c.(517-519)CTG>CTA	p.L173L	RERGL_uc001rdr.2_Silent_p.L172L	NM_024730	NP_079006	Q9H628	RERGL_HUMAN	RERG/RAS-like	173	Small GTPase-like.				signal transduction	membrane	GTP binding|GTPase activity				0						TGAAGTTTATCAGGATGTCCT	0.398													16	20					0	0	0.003163	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19285377	19285377	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:19285377T>C	uc001reb.2	+	3	306	c.220T>C	c.(220-222)TAT>CAT	p.Y74H	PLEKHA5_uc010sie.1_Missense_Mutation_p.Y74H|PLEKHA5_uc001rea.2_Missense_Mutation_p.Y74H|PLEKHA5_uc009zin.2_5'UTR|PLEKHA5_uc001rdz.3_Missense_Mutation_p.Y74H	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	74	WW 2.						1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					TGCAAGATACTATATAAAGTG	0.313													40	40					0	0	0.001951	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21175910	21175910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:21175910G>A	uc010sin.1	+	4	467	c.467G>A	c.(466-468)GGA>GAA	p.G156E	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.G203E	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	156						membrane	transporter activity				0						GCAAAAGAAGGACATTCTTCC	0.343													5	28					0	0	0.000602	0	0
LST-3TM12	338821	broad.mit.edu	37	12	21205109	21205109	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:21205109G>A	uc010sin.1	+	9	1270	c.1270G>A	c.(1270-1272)GAA>AAA	p.E424K	SLCO1B3_uc010sil.1_Intron|LST-3TM12_uc010sim.1_Missense_Mutation_p.E471K	NM_001009562	NP_001009562	Q71QF0	Q71QF0_HUMAN	liver-specific organic anion transporter 3TM12	424						membrane	transporter activity				0						AAGTCAATGGGAACCCGTCTG	0.373													53	32					0	0	0.003610	0	0
GYS2	2998	broad.mit.edu	37	12	21728963	21728963	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:21728963C>T	uc001rfb.2	-	3	587	c.332G>A	c.(331-333)GGA>GAA	p.G111E		NM_021957	NP_068776	P54840	GYS2_HUMAN	glycogen synthase 2	111					glucose metabolic process|glycogen biosynthetic process|response to glucose stimulus	cortical actin cytoskeleton|cytosol|ectoplasm|insoluble fraction|soluble fraction	glycogen (starch) synthase activity|protein homodimerization activity			lung(1)|skin(1)	2						ATAAGGACTTCCTTCTATCAG	0.433													16	38					0	0	0.003163	0	0
AMN1	196394	broad.mit.edu	37	12	31862360	31862360	+	Splice_Site	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:31862360C>A	uc001rkq.3	-	2	205	c.39_splice	c.e2-1	p.L13_splice	AMN1_uc001rko.3_Splice_Site|AMN1_uc010skc.1_Splice_Site|AMN1_uc001rkp.3_Splice_Site|AMN1_uc009zjs.2_Intron|AMN1_uc009zjt.1_Intron	NM_001113402	NP_001106873	Q8IY45	AMN1_HUMAN	antagonist of mitotic exit network 1 homolog												0	all_cancers(9;7.41e-12)|all_epithelial(9;1.18e-11)|all_lung(12;1.14e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0336)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.162)		OV - Ovarian serous cystadenocarcinoma(6;0.0014)			CCAAAGGCATCTGAAATACAA	0.353													7	7					2.0095e-06	2.4321e-06	0.001984	1	0
PDZRN4	29951	broad.mit.edu	37	12	41966312	41966312	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:41966312C>T	uc010skn.1	+	10	1202	c.1134C>T	c.(1132-1134)CCC>CCT	p.P378P	PDZRN4_uc001rmq.3_Silent_p.P319P|PDZRN4_uc009zjz.2_Silent_p.P317P|PDZRN4_uc001rmr.2_Silent_p.P204P	NM_013377	NP_037509	Q6ZMN7	PZRN4_HUMAN	PDZ domain containing RING finger 4 isoform 2	577							ubiquitin-protein ligase activity|zinc ion binding	p.K378N(1)		lung(3)|skin(3)|ovary(2)|large_intestine(1)|kidney(1)|pancreas(1)	11	all_cancers(12;0.000673)	Lung NSC(34;0.0205)|all_lung(34;0.0264)				CCGAGGACCCCAATAGCACAT	0.498													8	9					0	0	0.004482	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43822444	43822444	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:43822444C>T	uc010skx.1	-	25	3648	c.3648G>A	c.(3646-3648)TGG>TGA	p.W1216*	ADAMTS20_uc001rno.1_Nonsense_Mutation_p.W334*|ADAMTS20_uc001rnp.1_Nonsense_Mutation_p.W370*	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1216	TSP type-1 8.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TTACGGGTGACCAATCCCCTG	0.328													7	10					0	0	0.001984	0	0
DBX2	440097	broad.mit.edu	37	12	45410375	45410375	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:45410375C>T	uc001rok.1	-	4	886	c.714G>A	c.(712-714)AGG>AGA	p.R238R		NM_001004329	NP_001004329	Q6ZNG2	DBX2_HUMAN	developing brain homeobox 2	238	Homeobox.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Lung SC(27;0.192)	Lung NSC(34;0.142)		GBM - Glioblastoma multiforme(48;0.0515)		GCCATTTCATCCTCCTGTTCT	0.388													17	54					0	0	0.007413	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458758	45458758	+	RNA	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:45458758G>A	uc001rol.2	-	1		c.437C>T				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						CCTCTGTTGAGAAAAGCCAAA	0.433													8	19					0	0	0.006214	0	0
FAM113B	91523	broad.mit.edu	37	12	47629420	47629420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:47629420G>A	uc001rpn.2	+	4	1305	c.574G>A	c.(574-576)GAA>AAA	p.E192K	FAM113B_uc010slj.1_Missense_Mutation_p.E72K|FAM113B_uc001rpq.2_Missense_Mutation_p.E192K	NM_138371	NP_612380	Q96HM7	F113B_HUMAN	hypothetical protein LOC91523	192							hydrolase activity			skin(3)|ovary(2)	5	Renal(347;0.138)|Lung SC(27;0.192)					CCTGAAAAACGAAGTGGTCAA	0.582													8	21					0	0	0.003080	0	0
ZNF641	121274	broad.mit.edu	37	12	48738484	48738484	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:48738484G>A	uc001rrn.1	-	5	625	c.460C>T	c.(460-462)CCC>TCC	p.P154S	ZNF641_uc001rro.1_Missense_Mutation_p.P140S|ZNF641_uc010sls.1_Missense_Mutation_p.P131S	NM_152320	NP_689533	Q96N77	ZN641_HUMAN	zinc finger protein 641	154	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2						TCCAGTTTGGGAATTGGAAAT	0.403													23	37					0	0	0.004656	0	0
KCNH3	23416	broad.mit.edu	37	12	49948157	49948157	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:49948157G>A	uc001ruh.1	+	11	2216	c.1956G>A	c.(1954-1956)CGG>CGA	p.R652R	KCNH3_uc010smj.1_Silent_p.R592R	NM_012284	NP_036416	Q9ULD8	KCNH3_HUMAN	potassium voltage-gated channel, subfamily H	652	cNMP.|Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	two-component sensor activity|voltage-gated potassium channel activity				0						TGCCCCGGCGGGAGCAGGTGG	0.637													35	80					0	0	0.005524	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50190432	50190433	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:50190432_50190433GG>AA	uc009zlk.2	-	8	1412_1413	c.1210_1211CC>TT	c.(1210-1212)CCC>TTC	p.P404F	NCKAP5L_uc001rvc.3_5'Flank|NCKAP5L_uc001rvb.2_5'UTR	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	400	Pro-rich.									central_nervous_system(1)	1						GCTAAGGAAGGGGAGGGGCCCC	0.629													4	19					0	0	0.004672	0	0
POU6F1	5463	broad.mit.edu	37	12	51584284	51584284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:51584284C>T	uc001rxy.2	-	5	844	c.652G>A	c.(652-654)GAA>AAA	p.E218K	POU6F1_uc001rxz.2_Missense_Mutation_p.E218K|POU6F1_uc001rya.2_Missense_Mutation_p.E218K	NM_002702	NP_002693	Q14863	PO6F1_HUMAN	POU class 6 homeobox 1	218					brain development|heart development|muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGCTGGCCTTCCTGGTTCCGC	0.572													49	91					0	0	0.003610	0	0
ACVRL1	94	broad.mit.edu	37	12	52312851	52312851	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:52312851T>A	uc001rzj.2	+	9	1612	c.1329T>A	c.(1327-1329)TGT>TGA	p.C443*	ACVRL1_uc001rzk.2_Nonsense_Mutation_p.C443*|ACVRL1_uc010snm.1_Nonsense_Mutation_p.C269*	NM_000020	NP_000011	P37023	ACVL1_HUMAN	activin A receptor type II-like 1 precursor	443	Cytoplasmic (Potential).|Protein kinase.				blood vessel endothelial cell proliferation involved in sprouting angiogenesis|blood vessel maturation|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of endothelial cell migration|negative regulation of focal adhesion assembly|positive regulation of BMP signaling pathway|positive regulation of transcription, DNA-dependent|regulation of blood pressure|regulation of blood vessel endothelial cell migration|regulation of DNA replication|regulation of endothelial cell proliferation|transforming growth factor beta receptor signaling pathway|wound healing, spreading of epidermal cells	cell surface|integral to plasma membrane	activin binding|activin receptor activity, type I|ATP binding|metal ion binding|receptor signaling protein serine/threonine kinase activity|SMAD binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			lung(2)	2				BRCA - Breast invasive adenocarcinoma(357;0.0991)	Adenosine triphosphate(DB00171)	AGGTGGTGTGTGTGGATCAGC	0.587									Hereditary_Hemorrhagic_Telangiectasia				27	28					0	0	0.003954	0	0
KRT83	3889	broad.mit.edu	37	12	52708528	52708528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:52708528C>T	uc001saf.2	-	9	1432	c.1369G>A	c.(1369-1371)GTC>ATC	p.V457I		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	457	Tail.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCACTGCAGACGCTGCCCGTC	0.672													5	8					0	0	0.000602	0	0
KRT5	3852	broad.mit.edu	37	12	52914057	52914057	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:52914057G>A	uc001san.2	-	1	187	c.24C>T	c.(22-24)TCC>TCT	p.S8S	KRT5_uc009zmh.2_Silent_p.S8S	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	8	Head.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		CGCTCCGGAAGGACACACTTG	0.637													7	1					0	0	0.006214	0	0
EIF4B	1975	broad.mit.edu	37	12	53427604	53427604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:53427604C>T	uc001sbh.3	+	9	1200	c.994C>T	c.(994-996)CCC>TCC	p.P332S	EIF4B_uc010snu.1_Missense_Mutation_p.P332S|EIF4B_uc010snv.1_Missense_Mutation_p.P293S|EIF4B_uc001sbi.2_Missense_Mutation_p.P84S	NM_001417	NP_001408	P23588	IF4B_HUMAN	eukaryotic translation initiation factor 4B	332					insulin receptor signaling pathway|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	nucleotide binding|translation initiation factor activity			breast(1)|kidney(1)	2						CCCCCAAAGACCCAAACTGAA	0.438													17	36					0	0	0.001523	0	0
OR6C2	341416	broad.mit.edu	37	12	55846588	55846588	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:55846588T>C	uc001sgz.1	+	1	591	c.591T>C	c.(589-591)GTT>GTC	p.V197V		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	197	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						AACAGATGGTTATACTTATGG	0.403													34	61					0	0	0.004289	0	0
RAB5B	5869	broad.mit.edu	37	12	56385937	56385937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:56385937C>T	uc001siv.2	+	6	706	c.589C>T	c.(589-591)CGG>TGG	p.R197W	RAB5B_uc001siw.2_Missense_Mutation_p.R197W|RAB5B_uc009zog.2_Missense_Mutation_p.R137W|RAB5B_uc010spz.1_Missense_Mutation_p.R156W	NM_002868	NP_002859	P61020	RAB5B_HUMAN	RAB5B, member RAS oncogene family	197					protein transport|small GTPase mediated signal transduction	early endosome membrane|melanosome|membrane fraction|plasma membrane	GTP binding|GTP-dependent protein binding|GTPase activity				0			UCEC - Uterine corpus endometrioid carcinoma (6;0.0471)|OV - Ovarian serous cystadenocarcinoma(18;0.235)			AGGCCGAAGCCGGGGTGTGGA	0.493													18	50					0	0	0.002780	0	0
CDK4	1019	broad.mit.edu	37	12	58143034	58143035	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:58143034_58143035GG>AT	uc001spv.2	-	7	976_977	c.749_750CC>AT	c.(748-750)CCC>CAT	p.P250H	CDK4_uc010ssb.1_Missense_Mutation_p.P130H|CDK4_uc001spw.2_RNA|uc010ssc.1_5'Flank	NM_000075	NP_000066	P11802	CDK4_HUMAN	cyclin-dependent kinase 4	250	Protein kinase.				cell division|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|positive regulation of fibroblast proliferation|regulation of gene expression|response to drug|S phase of mitotic cell cycle	cyclin-dependent protein kinase holoenzyme complex|cytosol|membrane	ATP binding|cyclin-dependent protein kinase activity|protein binding			lung(1)|breast(1)|central_nervous_system(1)	3	all_cancers(7;4.96e-69)|Lung NSC(6;5.5e-25)|all_lung(6;3.87e-23)|all_epithelial(6;1.66e-15)|Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)		GBM - Glioblastoma multiforme(5;4.21e-120)|all cancers(5;3.75e-83)|BRCA - Breast invasive adenocarcinoma(9;0.0294)			GCCCTCTGGGGGGAAAGGCTCC	0.639			Mis			melanoma 			Hereditary_Melanoma				16	33					0	0	0.004672	0	0
SRGAP1	57522	broad.mit.edu	37	12	64491137	64491137	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:64491137G>A	uc010ssp.1	+	15	1851	c.1795G>A	c.(1795-1797)GAT>AAT	p.D599N	SRGAP1_uc001srv.2_Missense_Mutation_p.D536N	NM_020762	NP_065813	Q7Z6B7	SRGP1_HUMAN	SLIT-ROBO Rho GTPase activating protein 1	599	Rho-GAP.				axon guidance	cytosol				ovary(2)|central_nervous_system(2)	4			GBM - Glioblastoma multiforme(3;0.000139)|BRCA - Breast invasive adenocarcinoma(9;0.225)	GBM - Glioblastoma multiforme(28;0.0608)		AAGATTTAACGATCTGATTTC	0.423													15	20					0	0	0.006122	0	0
RAP1B	5908	broad.mit.edu	37	12	69047971	69047972	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:69047971_69047972CC>TT	uc001sub.2	+	5	426_427	c.263_264CC>TT	c.(262-264)TCC>TTT	p.S88F	RAP1B_uc010ste.1_Missense_Mutation_p.S22F|RAP1B_uc001suc.2_Missense_Mutation_p.S88F|RAP1B_uc010stf.1_Missense_Mutation_p.S69F|RAP1B_uc010stg.1_Missense_Mutation_p.S46F|RAP1B_uc010sth.1_Missense_Mutation_p.S46F|RAP1B_uc010sti.1_Intron	NM_001089704	NP_001083173	P61224	RAP1B_HUMAN	SubName: Full=Ras-related protein Rap-1A; SubName: Full=cDNA FLJ75985, highly similar to Homo sapiens RAP1A, member of RAS oncogene family (RAP1A), transcript variant 2, mRNA; SubName: Full=RAP1A, member of RAS oncogene family;	88					blood coagulation|energy reserve metabolic process|regulation of establishment of cell polarity|regulation of insulin secretion	cell-cell junction|cytosol	GDP binding|GTP binding|GTPase activity|protein binding				0	Breast(13;1.24e-05)		Lung(24;0.000131)|LUAD - Lung adenocarcinoma(15;0.00107)|STAD - Stomach adenocarcinoma(21;0.00694)	GBM - Glioblastoma multiforme(7;0.000306)		ACAGCACAGTCCACATTTAACG	0.337													41	124					0	0	0.004672	0	0
PTPRB	5787	broad.mit.edu	37	12	70949670	70949670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:70949670C>T	uc001swb.3	-	17	4349	c.4319G>A	c.(4318-4320)AGC>AAC	p.S1440N	PTPRB_uc010sto.1_Missense_Mutation_p.S1350N|PTPRB_uc010stp.1_Missense_Mutation_p.S1350N|PTPRB_uc001swc.3_Missense_Mutation_p.S1658N|PTPRB_uc001swa.3_Missense_Mutation_p.S1570N	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	1440	Fibronectin type-III 16.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			TGTGATAGTGCTGTCTTCAAC	0.522													7	12					0	0	0.004482	0	0
NAV3	89795	broad.mit.edu	37	12	78360052	78360052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:78360052G>A	uc001syp.2	+	4	631	c.458G>A	c.(457-459)GGG>GAG	p.G153E	NAV3_uc001syo.2_Missense_Mutation_p.G153E	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	153	CH.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GCAGCCAGAGGGGTAAATGTT	0.313										HNSCC(70;0.22)			20	43					0	0	0.002780	0	0
PPFIA2	8499	broad.mit.edu	37	12	81769697	81769697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:81769697C>T	uc001szo.1	-	10	1170	c.1009G>A	c.(1009-1011)GAA>AAA	p.E337K	PPFIA2_uc010sue.1_Missense_Mutation_p.E237K|PPFIA2_uc010sug.1_RNA|PPFIA2_uc010suh.1_RNA|PPFIA2_uc010sui.1_RNA|PPFIA2_uc010suj.1_RNA|PPFIA2_uc009zsi.1_RNA	NM_003625	NP_003616	B7Z663	B7Z663_HUMAN	PTPRF interacting protein alpha 2	263										ovary(3)|lung(2)|pancreas(1)	6						ATTCTTTCTTCCATATCTTCC	0.313													15	36					0	0	0.004990	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85450714	85450714	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:85450714T>G	uc001tac.2	+	8	2254	c.2143T>G	c.(2143-2145)TGC>GGC	p.C715G	LRRIQ1_uc001tab.1_Missense_Mutation_p.C715G|LRRIQ1_uc001taa.1_Missense_Mutation_p.C690G	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	715										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TTCAGAAAAATGCCATGAAAA	0.383													72	152					0	0	0.003610	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85515612	85515612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:85515612G>A	uc001tac.2	+	16	3626	c.3515G>A	c.(3514-3516)CGA>CAA	p.R1172Q	LRRIQ1_uc001tab.1_Missense_Mutation_p.R1172Q	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1172										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TCTCAGATTCGAGAATTCAAC	0.343													15	27					0	0	0.006122	0	0
C12orf50	160419	broad.mit.edu	37	12	88390262	88390262	+	Missense_Mutation	SNP	C	T	T	rs146964348	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:88390262C>T	uc001tam.1	-	6	538	c.370G>A	c.(370-372)GAA>AAA	p.E124K	C12orf50_uc001tan.2_Missense_Mutation_p.E178K	NM_152589	NP_689802	Q8NA57	CL050_HUMAN	hypothetical protein LOC160419	124										skin(2)|ovary(1)	3						CTGTAGTATTCCCCTAATCAA	0.313													16	19					0	0	0.004007	0	0
TMTC3	160418	broad.mit.edu	37	12	88589038	88589038	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:88589038A>G	uc001tau.2	+	14	2577	c.2357A>G	c.(2356-2358)GAC>GGC	p.D786G		NM_181783	NP_861448	Q6ZXV5	TMTC3_HUMAN	transmembrane and tetratricopeptide repeat	787	TPR 10.					integral to membrane	binding			skin(1)	1						GAAGAAAAAGACTTATTAAAA	0.343													24	36					0	0	0.003330	0	0
UTP20	27340	broad.mit.edu	37	12	101748767	101748767	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:101748767C>T	uc001tia.1	+	41	5421	c.5265C>T	c.(5263-5265)TCC>TCT	p.S1755S		NM_014503	NP_055318	O75691	UTP20_HUMAN	down-regulated in metastasis	1755					endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|negative regulation of cell proliferation	90S preribosome|cytoplasm|nucleolus|nucleoplasm|preribosome, small subunit precursor|small-subunit processome	protein binding			ovary(2)|breast(2)	4						CTAAAGAATCCGAGTGTATCA	0.433													10	24					0	0	0.000673	0	0
IGF1	3479	broad.mit.edu	37	12	102811752	102811752	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:102811752C>T	uc001tjp.3	-	4	651	c.432G>A	c.(430-432)ACG>ACA	p.T144T	IGF1_uc001tjn.2_Intron|IGF1_uc001tjm.2_Silent_p.T144T|IGF1_uc001tjo.2_Intron	NM_001111285	NP_001104755	P05019	IGF1_HUMAN	insulin-like growth factor 1 isoform 3	144					anti-apoptosis|bone mineralization involved in bone maturation|cellular component movement|DNA replication|glycolate metabolic process|muscle hypertrophy|myoblast differentiation|myoblast proliferation|myotube cell development|negative regulation of smooth muscle cell apoptosis|phosphatidylinositol-mediated signaling|platelet activation|platelet degranulation|positive regulation of activated T cell proliferation|positive regulation of DNA replication|positive regulation of epithelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of insulin-like growth factor receptor signaling pathway|positive regulation of mitosis|positive regulation of osteoblast differentiation|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of Ras protein signal transduction|positive regulation of smooth muscle cell migration|positive regulation of smooth muscle cell proliferation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tyrosine phosphorylation of Stat5 protein|Ras protein signal transduction|regulation of multicellular organism growth|satellite cell maintenance involved in skeletal muscle regeneration	platelet alpha granule lumen	growth factor activity|hormone activity|insulin receptor binding|insulin-like growth factor receptor binding|integrin binding			central_nervous_system(1)|pancreas(1)	2						TCTGAGACTTCGTGTTCTTGT	0.463													47	82					0	0	0.002522	0	0
C12orf42	374470	broad.mit.edu	37	12	103700110	103700110	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:103700110C>T	uc001tjt.2	-	5	361	c.273G>A	c.(271-273)AGG>AGA	p.R91R	C12orf42_uc001tjs.2_Intron|C12orf42_uc009zuf.1_Silent_p.R91R|C12orf42_uc001tju.2_5'UTR	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	91										ovary(1)|central_nervous_system(1)	2						AATTTTGAGTCCTTTCTGGAA	0.373													7	7					0	0	0.003080	0	0
STAB2	55576	broad.mit.edu	37	12	104142832	104142833	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:104142832_104142833GG>AA	uc001tjw.2	+	59	6522_6523	c.6336_6337GG>AA	c.(6334-6339)AAGGGA>AAAAGA	p.G2113R	STAB2_uc009zug.2_RNA	NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	2113	Extracellular (Potential).|EGF-like 16.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						GCTGCCAGAAGGGATACAAAGG	0.589													18	24					0	0	0.004672	0	0
RFX4	5992	broad.mit.edu	37	12	107002601	107002601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:107002601G>A	uc001tlr.2	+	2	136	c.70G>A	c.(70-72)GAA>AAA	p.E24K	RFX4_uc010swv.1_RNA|RFX4_uc001tls.2_Missense_Mutation_p.E33K|RFX4_uc001tlt.2_Missense_Mutation_p.E33K	NM_213594	NP_998759	Q33E94	RFX4_HUMAN	regulatory factor X4 isoform c	24					transcription, DNA-dependent	nucleus	DNA binding			upper_aerodigestive_tract(1)	1						ATGTCTCAACGAAAGTGAAAA	0.308													8	15					0	0	0.004482	0	0
ACACB	32	broad.mit.edu	37	12	109673144	109673144	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:109673144C>T	uc001tob.2	+	32	4493	c.4374C>T	c.(4372-4374)CTC>CTT	p.L1458L	ACACB_uc001toc.2_Silent_p.L1458L|ACACB_uc010sxl.1_RNA|ACACB_uc001tod.2_RNA|ACACB_uc010sxm.1_Silent_p.L124L	NM_001093	NP_001084	O00763	ACACB_HUMAN	acetyl-Coenzyme A carboxylase beta	1458					acetyl-CoA metabolic process|carnitine shuttle|energy reserve metabolic process|fatty acid biosynthetic process|positive regulation of cellular metabolic process|protein homotetramerization|regulation of fatty acid oxidation	cytosol|endomembrane system|Golgi apparatus|membrane	acetyl-CoA carboxylase activity|ATP binding|biotin carboxylase activity|metal ion binding|protein binding			ovary(5)|upper_aerodigestive_tract(1)|pancreas(1)|skin(1)	8					Biotin(DB00121)	ATTATGGACTCCGACGAATCA	0.284													14	40					0	0	0.004007	0	0
MYO1H	283446	broad.mit.edu	37	12	109853352	109853353	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:109853352_109853353GG>AA	uc010sxn.1	+	14	1476_1477	c.1476_1477GG>AA	c.(1474-1479)AAGGGC>AAAAGC	p.G493S		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						CTGGTCCAAAGGGCCGAAAGAG	0.421													3	2					0	0	0.004672	0	0
ATP2A2	488	broad.mit.edu	37	12	110719652	110719652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:110719652G>A	uc001tqk.3	+	1	621	c.58G>A	c.(58-60)GAG>AAG	p.E20K	ATP2A2_uc001tql.3_Missense_Mutation_p.E20K|ATP2A2_uc010sxy.1_Missense_Mutation_p.E20K	NM_170665	NP_733765	P16615	AT2A2_HUMAN	ATPase, Ca++ transporting, slow twitch 2 isoform	20	Cytoplasmic (By similarity).				ATP biosynthetic process|cell adhesion|epidermis development|platelet activation|sarcoplasmic reticulum calcium ion transport	integral to plasma membrane|microsome|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|protein C-terminus binding|S100 alpha binding			ovary(3)|skin(1)	4						CGGCGTCAACGAGAGTACGGG	0.706													4	6					0	0	0.000248	0	0
C12orf51	283450	broad.mit.edu	37	12	112673402	112673402	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:112673402G>A	uc009zwc.2	-	29	4383	c.4365C>T	c.(4363-4365)GTC>GTT	p.V1455V		NM_001109662	NP_001103132			chromosome 12 open reading frame 51											ovary(1)|lung(1)	2						TTAAGGAGGGGACAGAGTAGC	0.567													15	23					0	0	0.003163	0	0
RPH3A	22895	broad.mit.edu	37	12	113314570	113314570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:113314570C>T	uc010syl.1	+	13	1432	c.1070C>T	c.(1069-1071)TCC>TTC	p.S357F	RPH3A_uc001ttz.2_Missense_Mutation_p.S357F|RPH3A_uc001tty.2_Missense_Mutation_p.S353F|RPH3A_uc009zwe.1_Missense_Mutation_p.S353F|RPH3A_uc010sym.1_Missense_Mutation_p.S308F|RPH3A_uc001tua.2_Missense_Mutation_p.S117F	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	357	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		GGACCCTATTCCCAAGCATCT	0.647													9	25					0	0	0.004482	0	0
SLC24A6	80024	broad.mit.edu	37	12	113744325	113744325	+	Silent	SNP	G	A	A	rs142106014		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:113744325G>A	uc001tvc.2	-	14	1677	c.1467C>T	c.(1465-1467)TCC>TCT	p.S489S	SLC24A6_uc001tuz.2_Silent_p.S194S|SLC24A6_uc001tva.2_RNA|SLC24A6_uc001tvb.2_Silent_p.S227S	NM_024959	NP_079235	Q6J4K2	NCKX6_HUMAN	solute carrier family 24 member 6 precursor	489	Helical; Name=11; (Potential).				response to stimulus|sodium ion transport	integral to membrane|plasma membrane	calcium:cation antiporter activity			central_nervous_system(1)	1						CAAAGCAGGCGGAGAACGCCA	0.607													8	12					0	0	0.004482	0	0
NOS1	4842	broad.mit.edu	37	12	117703233	117703233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:117703233C>T	uc001twm.1	-	12	2710	c.2024G>A	c.(2023-2025)GGG>GAG	p.G675E		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	675					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	AGGGCAGCCCCCCCGGCAGCG	0.607													8	5					0	0	0.003080	0	0
GCN1L1	10985	broad.mit.edu	37	12	120602154	120602154	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:120602154G>C	uc001txo.2	-	18	1847	c.1834C>G	c.(1834-1836)CTC>GTC	p.L612V		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	612					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					TGAGAACTGAGGACAGTCTTC	0.592													21	36					0	0	0.002780	0	0
RNF10	9921	broad.mit.edu	37	12	121009075	121009075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:121009075C>T	uc001typ.3	+	14	2606	c.2123C>T	c.(2122-2124)CCC>CTC	p.P708L	RNF10_uc010szk.1_Intron|RNF10_uc001tyq.3_Missense_Mutation_p.P619L	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	708					negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					GAAGACTCTCCCTTCCCTTCC	0.527													12	44					0	0	0.001368	0	0
HNF1A	6927	broad.mit.edu	37	12	121431395	121431395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:121431395G>A	uc001tzg.2	+	3	622	c.599G>A	c.(598-600)CGG>CAG	p.R200Q	HNF1A_uc001tze.1_Missense_Mutation_p.R200Q|HNF1A_uc001tzf.2_Missense_Mutation_p.R200Q|HNF1A_uc010szn.1_Missense_Mutation_p.R200Q	NM_000545	NP_000536	P20823	HNF1A_HUMAN	hepatic nuclear factor-1-alpha	200	Homeobox; HNF1-type.|Nuclear localization signal (Probable).		R -> W (in MODY3; expected to interfere with nuclear localization).		glucose homeostasis|glucose import|insulin secretion|positive regulation of transcription initiation from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|renal glucose absorption	cytoplasm|nucleus|protein complex	DNA binding|protein dimerization activity|protein heterodimerization activity|protein homodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			liver(92)|large_intestine(15)|endometrium(6)|breast(2)|lung(1)	116	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					AAGAAGGGGCGGAGGAACCGT	0.592									Hepatic_Adenoma_Familial_Clustering_of				103	214					0	0	0.003610	0	0
CCDC92	80212	broad.mit.edu	37	12	124422110	124422110	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:124422110G>A	uc001ufw.1	-	5	638	c.491C>T	c.(490-492)GCC>GTC	p.A164V	CCDC92_uc001ufv.1_Missense_Mutation_p.A147V|CCDC92_uc001ufx.1_Missense_Mutation_p.A164V|CCDC92_uc001ufy.1_Missense_Mutation_p.A147V	NM_025140	NP_079416	Q53HC0	CCD92_HUMAN	coiled-coil domain containing 92	164											0	all_neural(191;0.101)|Medulloblastoma(191;0.163)			Epithelial(86;0.0002)|OV - Ovarian serous cystadenocarcinoma(86;0.000222)|all cancers(50;0.00129)|BRCA - Breast invasive adenocarcinoma(302;0.242)		CTTCTTGGCGGCGTGCAGCTG	0.647													26	31					0	0	0.005443	0	0
DHX37	57647	broad.mit.edu	37	12	125441594	125441594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:125441594G>A	uc001ugy.2	-	17	2344	c.2245C>T	c.(2245-2247)CCG>TCG	p.P749S		NM_032656	NP_116045	Q8IY37	DHX37_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 37	749							ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			skin(1)	1	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;8.05e-05)|Epithelial(86;0.000486)|all cancers(50;0.00653)		TTCTGGGGCGGTTGCAGGGCA	0.627													24	36					0	0	0.003330	0	0
TMEM132D	121256	broad.mit.edu	37	12	129694134	129694134	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:129694134C>T	uc009zyl.1	-	5	1702	c.1374G>A	c.(1372-1374)GAG>GAA	p.E458E		NM_133448	NP_597705	Q14C87	T132D_HUMAN	transmembrane protein 132D precursor	458	Extracellular (Potential).					integral to membrane				ovary(10)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	14	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0934)|Breast(359;0.133)		OV - Ovarian serous cystadenocarcinoma(86;0.000288)|Epithelial(86;0.0116)|all cancers(50;0.0246)		TGCCGTCGTCCTCCACGGAGA	0.567													9	11					0	0	0.000673	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751234	19751234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:19751234C>T	uc009zzj.2	-	4	938	c.889G>A	c.(889-891)GAG>AAG	p.E297K		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	297					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TTGGCTGGCTCGAAGCAGGCA	0.607													32	63					0	0	0.004289	0	0
TPTE2	93492	broad.mit.edu	37	13	19997240	19997240	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:19997240G>A	uc001umd.2	-	21	1742	c.1531C>T	c.(1531-1533)CCA>TCA	p.P511S	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.P400S|TPTE2_uc001ume.2_Missense_Mutation_p.P434S|TPTE2_uc009zzm.2_Missense_Mutation_p.P182S|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.P182S	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	511	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		GCAAATTCTGGTGGATAAATT	0.363													18	18					0	0	0.001882	0	0
XPO4	64328	broad.mit.edu	37	13	21382643	21382643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:21382643G>A	uc001unq.3	-	12	1607	c.1571C>T	c.(1570-1572)TCA>TTA	p.S524L		NM_022459	NP_071904	Q9C0E2	XPO4_HUMAN	exportin 4	524					protein transport	cytoplasm|nucleus	protein binding			large_intestine(1)|ovary(1)|kidney(1)	3		all_cancers(29;5.05e-24)|all_epithelial(30;5.56e-20)|all_lung(29;2.38e-16)|Lung SC(185;0.0262)|Hepatocellular(188;0.244)		all cancers(112;0.000521)|Epithelial(112;0.000892)|OV - Ovarian serous cystadenocarcinoma(117;0.0148)|Lung(94;0.0189)|LUSC - Lung squamous cell carcinoma(192;0.0548)		AACAGTGCTTGAACCCGGTGA	0.358													12	29					0	0	0.001368	0	0
SACS	26278	broad.mit.edu	37	13	23913384	23913384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:23913384G>A	uc001uon.2	-	10	5220	c.4631C>T	c.(4630-4632)TCT>TTT	p.S1544F	SACS_uc001uoo.2_Missense_Mutation_p.S1397F|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1544					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CCTTTTTAAAGATTCTCCTAA	0.393													10	28					0	0	0.006214	0	0
FRY	10129	broad.mit.edu	37	13	32776495	32776495	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:32776495C>T	uc001utx.2	+	31	4345	c.3849C>T	c.(3847-3849)ATC>ATT	p.I1283I	FRY_uc010tdw.1_RNA	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	1283					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CTTTATAGATCCTTGAAGCAA	0.388													14	39					0	0	0.001855	0	0
FRY	10129	broad.mit.edu	37	13	32841345	32841345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:32841345C>T	uc001utx.2	+	55	8481	c.7985C>T	c.(7984-7986)TCG>TTG	p.S2662L	FRY_uc010tdw.1_RNA|FRY_uc001uty.2_Missense_Mutation_p.S217L|FRY_uc001utz.2_Missense_Mutation_p.S187L|FRY_uc010tdx.1_Missense_Mutation_p.S32L	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2662					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		CCCCCTCCCTCGCCCTTCTTC	0.537													33	58					0	0	0.003271	0	0
MAB21L1	4081	broad.mit.edu	37	13	36049943	36049943	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:36049943G>A	uc001uvc.2	-	1	890	c.333C>T	c.(331-333)TCC>TCT	p.S111S	NBEA_uc001uvb.2_Intron|NBEA_uc010abi.2_Intron|NBEA_uc010tee.1_Intron|NBEA_uc010tef.1_5'Flank|NBEA_uc010teg.1_5'Flank	NM_005584	NP_005575	Q13394	MB211_HUMAN	mab-21-like protein 1	111					anatomical structure morphogenesis	nucleus				ovary(2)	2		Breast(139;0.014)|Lung SC(185;0.051)|Prostate(109;0.202)		all cancers(112;9.63e-08)|Epithelial(112;1.37e-06)|BRCA - Breast invasive adenocarcinoma(63;0.000659)|OV - Ovarian serous cystadenocarcinoma(117;0.00372)|GBM - Glioblastoma multiforme(144;0.115)		CCACCCAGAGGGACATGCTCC	0.577													12	24					0	0	0.000978	0	0
NBEA	26960	broad.mit.edu	37	13	36125086	36125086	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:36125086C>T	uc001uvb.2	+	43	6929	c.6723C>T	c.(6721-6723)TTC>TTT	p.F2241F	NBEA_uc010abi.2_Silent_p.F897F|NBEA_uc010tee.1_Silent_p.F34F|NBEA_uc010tef.1_Silent_p.F34F|NBEA_uc010teg.1_Silent_p.F34F	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2241						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		TGTTTAATTTCCCTGATCAAG	0.388													6	22					0	0	0.001984	0	0
NBEA	26960	broad.mit.edu	37	13	36242548	36242548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:36242548G>A	uc001uvb.2	+	57	8848	c.8642G>A	c.(8641-8643)GGG>GAG	p.G2881E	NBEA_uc010abi.2_Missense_Mutation_p.G1539E|NBEA_uc010tef.1_Missense_Mutation_p.G674E|NBEA_uc001uvd.2_Missense_Mutation_p.G459E	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	2881	WD 4.					cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GTCACCGGAGGGGACAATGGG	0.433													9	13					0	0	0.006214	0	0
MRPS31	10240	broad.mit.edu	37	13	41323282	41323282	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:41323282T>A	uc001uxm.3	-	6	1025	c.950A>T	c.(949-951)AAT>ATT	p.N317I		NM_005830	NP_005821	Q92665	RT31_HUMAN	mitochondrial ribosomal protein S31 precursor	317						mitochondrion|ribosome	protein domain specific binding				0		Lung NSC(96;3.55e-06)|Breast(139;0.00394)|Prostate(109;0.0181)|Lung SC(185;0.0262)|Hepatocellular(188;0.194)		all cancers(112;1.52e-08)|Epithelial(112;7.63e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000192)|GBM - Glioblastoma multiforme(144;0.00233)|BRCA - Breast invasive adenocarcinoma(63;0.0706)		ACCTGCTTCATTGTTAATTGG	0.358													30	48					0	0	0.002445	0	0
CCDC122	160857	broad.mit.edu	37	13	44433893	44433893	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:44433893T>C	uc010acf.2	-	5	729	c.470A>G	c.(469-471)GAT>GGT	p.D157G	CCDC122_uc010tfn.1_Missense_Mutation_p.D157G	NM_144974	NP_659411	Q5T0U0	CC122_HUMAN	coiled-coil domain containing 122	157											0		Lung NSC(96;7.5e-06)|Breast(139;0.00765)|Hepatocellular(98;0.00826)|Prostate(109;0.0143)|Lung SC(185;0.0262)		GBM - Glioblastoma multiforme(144;0.000767)|BRCA - Breast invasive adenocarcinoma(63;0.128)		TTTAACAAAATCTCGCTTTTC	0.318													27	41					0	0	0.006320	0	0
KIAA1704	55425	broad.mit.edu	37	13	45594490	45594490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:45594490C>T	uc001uzq.2	+	7	834	c.731C>T	c.(730-732)TCC>TTC	p.S244F	KIAA1704_uc010tfo.1_RNA|KIAA1704_uc001uzr.1_Missense_Mutation_p.S244F|KIAA1704_uc001uzs.2_Missense_Mutation_p.S121F|KIAA1704_uc001uzt.2_Missense_Mutation_p.S95F	NM_018559	NP_061029	Q8IXQ4	K1704_HUMAN	hypothetical protein LOC55425	244										pancreas(1)|skin(1)	2		Lung NSC(96;0.00143)|Prostate(109;0.0137)|Breast(139;0.0192)|Lung SC(185;0.0367)|Hepatocellular(98;0.133)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;0.000313)|BRCA - Breast invasive adenocarcinoma(63;0.126)		AGGAAGTCATCCAGTAAGAAA	0.294													35	54					0	0	0.002222	0	0
LOC220429	220429	broad.mit.edu	37	13	50466161	50466161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:50466161G>A	uc001vdk.2	+	1	1617	c.1435G>A	c.(1435-1437)GAA>AAA	p.E479K		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						TTTAAGGAAAGAAAATGCTCA	0.313													6	9					0	0	0.001168	0	0
LOC220429	220429	broad.mit.edu	37	13	50466841	50466841	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:50466841G>A	uc001vdk.2	+	1	2297	c.2115G>A	c.(2113-2115)GTG>GTA	p.V705V		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						TGTTTCCAGTGGATACGAGGG	0.522													28	84					0	0	0.007291	0	0
Unknown	0	broad.mit.edu	37	13	52035470	52035470	+	RNA	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:52035470T>C	uc001vfo.1	+	1		c.2375T>C								Homo sapiens cDNA FLJ34612 fis, clone KIDNE2014170, highly similar to 40S RIBOSOMAL PROTEIN S4, X ISOFORM.																		GGGTGACATGTTAGATCTTTG	0.373													7	9					0	0	0.001984	0	0
PCDH8	5100	broad.mit.edu	37	13	53422533	53422533	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:53422533G>A	uc001vhi.2	-	1	242	c.39C>T	c.(37-39)TTC>TTT	p.F13F	PCDH8_uc001vhj.2_Silent_p.F13F	NM_002590	NP_002581	O95206	PCDH8_HUMAN	protocadherin 8 isoform 1 precursor	13					cell-cell signaling|homophilic cell adhesion	cell junction|dendrite|integral to plasma membrane|postsynaptic membrane|presynaptic membrane	calcium ion binding			breast(1)	1		Lung NSC(96;0.0019)|Breast(56;0.00235)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.19e-08)		GCTGCAAGGGGAAAAGGCAGG	0.607													15	25					0	0	0.002450	0	0
PIBF1	10464	broad.mit.edu	37	13	73409470	73409470	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:73409470G>C	uc001vjc.2	+	9	1492	c.1187G>C	c.(1186-1188)CGA>CCA	p.R396P	PIBF1_uc001vja.1_Missense_Mutation_p.R396P|PIBF1_uc010aeo.1_RNA|PIBF1_uc001vjb.2_Missense_Mutation_p.R396P|PIBF1_uc010aep.2_5'UTR	NM_006346	NP_006337	Q8WXW3	PIBF1_HUMAN	progesterone-induced blocking factor 1	396						centrosome				ovary(1)|breast(1)	2		Prostate(6;0.00191)|Breast(118;0.0736)|Acute lymphoblastic leukemia(28;0.0865)		GBM - Glioblastoma multiforme(99;0.000664)		GATCAACTTCGAAATGCCTCT	0.303													28	49					0	0	0.006320	0	0
SLITRK1	114798	broad.mit.edu	37	13	84453655	84453655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:84453655G>A	uc001vlk.2	-	1	2874	c.1988C>T	c.(1987-1989)TCC>TTC	p.S663F		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	663	Cytoplasmic (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGTCTGTAGGGAATTAATCTC	0.557													13	18					0	0	0.001855	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370229	86370229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:86370229C>T	uc001vll.1	-	2	874	c.415G>A	c.(415-417)GAA>AAA	p.E139K	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	139	LRR 3.|Extracellular (Potential).					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		TGCAGGAATTCCAGGTTTTCC	0.363													28	41					0	0	0.004656	0	0
SLITRK5	26050	broad.mit.edu	37	13	88329680	88329680	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:88329680C>T	uc001vln.2	+	2	2256	c.2037C>T	c.(2035-2037)TTC>TTT	p.F679F	SLITRK5_uc010tic.1_Silent_p.F438F	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	679	Helical; (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					TGTCCGTCTTCGTGGCCGCCG	0.617													14	14					0	0	0.001855	0	0
GPC5	2262	broad.mit.edu	37	13	92101071	92101071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:92101071G>A	uc010tif.1	+	2	586	c.220G>A	c.(220-222)GAG>AAG	p.E74K		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	74						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				CAGGAAGATGGAGGAGAGATA	0.418													24	37					0	0	0.002780	0	0
DAOA	267012	broad.mit.edu	37	13	106124916	106124916	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:106124916G>A	uc001vqb.2	+	3	437	c.163G>A	c.(163-165)GTA>ATA	p.V55I	DAOA_uc010tjf.1_5'UTR|DAOA_uc001vpz.2_RNA|DAOA_uc010agd.2_RNA|DAOA_uc010tjg.1_5'UTR|DAOA_uc001vqc.2_RNA|DAOA_uc001vqe.2_RNA	NM_172370	NP_758958	P59103	DAOA_HUMAN	D-amino acid oxidase activator isoform 1	55						Golgi apparatus					0	Lung NSC(43;0.01)|all_neural(89;0.0741)|Lung SC(71;0.14)|Medulloblastoma(90;0.169)					AAGAGAGACGGTAACAAGGAA	0.388													8	10					0	0	0.004482	0	0
COL4A1	1282	broad.mit.edu	37	13	110838746	110838746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:110838746G>A	uc001vqw.3	-	26	2005	c.1883C>T	c.(1882-1884)TCC>TTC	p.S628F	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	628	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			CAGGCCTGGGGATCCAGGGCC	0.622													44	90					0	0	0.003610	0	0
CARS2	79587	broad.mit.edu	37	13	111303383	111303383	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:111303383G>A	uc001vrd.2	-	10	1092	c.1052C>T	c.(1051-1053)TCA>TTA	p.S351L	CARS2_uc010tjm.1_RNA	NM_024537	NP_078813	Q9HA77	SYCM_HUMAN	cysteinyl-tRNA synthetase 2, mitochondrial	351					cysteinyl-tRNA aminoacylation	cytosol|mitochondrial matrix	ATP binding|cysteine-tRNA ligase activity|metal ion binding				0	all_lung(23;3.61e-05)|Lung NSC(43;0.00144)|Lung SC(71;0.0753)|all_neural(89;0.077)|Medulloblastoma(90;0.148)		BRCA - Breast invasive adenocarcinoma(86;0.163)		L-Cysteine(DB00151)	CGGCTCACCTGAGCGGTAGCT	0.562													22	37					0	0	0.002299	0	0
GAS6	2621	broad.mit.edu	37	13	114530088	114530089	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr13:114530088_114530089CC>TT	uc001vud.2	-	12	1510_1511	c.1357_1358GG>AA	c.(1357-1359)GGA>AAA	p.G453K	GAS6_uc001vug.2_Missense_Mutation_p.G154K|GAS6_uc001vuf.2_Missense_Mutation_p.G180K	NM_000820	NP_000811	Q14393	GAS6_HUMAN	growth arrest-specific 6 isoform 1 precursor	496	Laminin G-like 1.				cell proliferation|leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|positive regulation of ERK1 and ERK2 cascade|positive regulation of fibroblast proliferation|post-translational protein modification|proteolysis|regulation of growth	endoplasmic reticulum lumen|extracellular space|Golgi lumen|platelet alpha granule lumen	calcium ion binding|receptor agonist activity			central_nervous_system(4)	4	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.0176)|all_epithelial(44;0.0104)|all_lung(25;0.0249)|Lung NSC(25;0.0908)|Breast(118;0.188)				GGTGTCTTCTCCGTTCAGCCAG	0.579													22	22					0	0	0.004672	0	0
OR11H12	440153	broad.mit.edu	37	14	19378093	19378093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:19378093G>A	uc010tkp.1	+	1	500	c.500G>A	c.(499-501)GGA>GAA	p.G167E		NM_001013354	NP_001013372	B2RN74	O11HC_HUMAN	olfactory receptor, family 11, subfamily H,	167	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGGTTTGTGGATTTCTGTGG	0.488													23	256					0	0	0.006999	0	0
POTEG	404785	broad.mit.edu	37	14	19573136	19573136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:19573136G>A	uc001vuz.1	+	8	1286	c.1234G>A	c.(1234-1236)GAT>AAT	p.D412N	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	412										ovary(1)	1						TAAGGGTGGTGATAGAAAGGT	0.323													5	45					0	0	0.003080	0	0
P704P	641455	broad.mit.edu	37	14	20019959	20019959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:20019959C>T	uc001vwc.3	-	1	314	c.262G>A	c.(262-264)GAC>AAC	p.D88N	P704P_uc001vwb.3_RNA	NM_001145442	NP_001138914	A6NI47	POTEM_HUMAN	prostate-specific P704P	88											0						ATAGCAGAGTCGTCGTGGTCT	0.627													20	287					0	0	0.007291	0	0
OR4Q3	441669	broad.mit.edu	37	14	20216336	20216336	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:20216336G>A	uc010tkt.1	+	1	750	c.750G>A	c.(748-750)CTG>CTA	p.L250L		NM_172194	NP_751944	Q8NH05	OR4Q3_HUMAN	olfactory receptor, family 4, subfamily Q,	250	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(3)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGTCAGCCTGATCTTCGTGC	0.458													33	69					0	0	0.006999	0	0
OR4N2	390429	broad.mit.edu	37	14	20295941	20295941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:20295941G>A	uc010tkv.1	+	1	334	c.334G>A	c.(334-336)GGA>AGA	p.G112R		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	112	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		AGGAGGGGAGGGATTACTCCT	0.512													40	61					0	0	0.006999	0	0
OR4K5	79317	broad.mit.edu	37	14	20388826	20388826	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:20388826C>T	uc010tkw.1	+	1	61	c.61C>T	c.(61-63)CAA>TAA	p.Q21*		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	21	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTGTAGTTCTCAAAAACTCCA	0.393													17	26					0	0	0.006122	0	0
TEP1	7011	broad.mit.edu	37	14	20845868	20845868	+	Silent	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:20845868C>G	uc001vxe.2	-	40	5806	c.5766G>C	c.(5764-5766)CTG>CTC	p.L1922L	TEP1_uc010ahk.2_Silent_p.L1265L|TEP1_uc010tlf.1_RNA|TEP1_uc010tlg.1_Silent_p.L1814L|TEP1_uc010tlh.1_Silent_p.L260L	NM_007110	NP_009041	Q99973	TEP1_HUMAN	telomerase-associated protein 1	1922					telomere maintenance via recombination	chromosome, telomeric region|cytoplasm|nuclear matrix|soluble fraction|telomerase holoenzyme complex	ATP binding|RNA binding			ovary(5)	5	all_cancers(95;0.00123)	all_lung(585;0.235)	Epithelial(56;7.42e-08)|all cancers(55;6.46e-07)	GBM - Glioblastoma multiforme(265;0.028)|READ - Rectum adenocarcinoma(17;0.233)		AAAGGGAACCCAGGTGCCCAC	0.582													3	45					0	0	0.004672	0	0
OR10G2	26534	broad.mit.edu	37	14	22102462	22102462	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:22102462C>T	uc010tmc.1	-	1	537	c.537G>A	c.(535-537)GTG>GTA	p.V179V		NM_001005466	NP_001005466	Q8NGC3	O10G2_HUMAN	olfactory receptor, family 10, subfamily G,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(95;0.00113)	Acute lymphoblastic leukemia(2;0.0279)		GBM - Glioblastoma multiforme(265;0.0142)		TAAAGTAATCCACCTGATTGG	0.572													18	37					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	14	22337432	22337432	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:22337432G>A	uc010tmf.1	+	2	305	c.226G>A	c.(226-228)GAA>AAA	p.E76K	uc001wbw.2_Intron|uc010tmg.1_Intron|uc010tmh.1_Missense_Mutation_p.E75K|uc001wby.2_Intron					SubName: Full=Putative uncharacterized protein ENSP00000374943;																		AAATGTGGGCGAAAAGAAAGA	0.428													65	97					0	0	0.003610	0	0
NFATC4	4776	broad.mit.edu	37	14	24841745	24841745	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:24841745A>G	uc001wpc.2	+	3	1616	c.1295A>G	c.(1294-1296)CAC>CGC	p.H432R	NFATC4_uc010tok.1_Missense_Mutation_p.H495R|NFATC4_uc010tol.1_Missense_Mutation_p.H495R|NFATC4_uc010alr.2_Missense_Mutation_p.H495R|NFATC4_uc010als.2_Missense_Mutation_p.H445R|NFATC4_uc010tom.1_Missense_Mutation_p.H445R|NFATC4_uc010ton.1_Missense_Mutation_p.H445R|NFATC4_uc010too.1_Missense_Mutation_p.H445R|NFATC4_uc010alt.2_Missense_Mutation_p.H464R|NFATC4_uc010top.1_Missense_Mutation_p.H464R|NFATC4_uc010toq.1_Missense_Mutation_p.H464R|NFATC4_uc010alu.2_Missense_Mutation_p.H124R|NFATC4_uc010tor.1_Missense_Mutation_p.H432R|NFATC4_uc010tos.1_Missense_Mutation_p.H362R|NFATC4_uc010tot.1_Missense_Mutation_p.H420R|NFATC4_uc010tou.1_Missense_Mutation_p.H362R|NFATC4_uc010tov.1_Missense_Mutation_p.H420R|NFATC4_uc010tow.1_Missense_Mutation_p.H362R|NFATC4_uc010alv.2_Missense_Mutation_p.H420R|NFATC4_uc010tox.1_Missense_Mutation_p.H362R|NFATC4_uc001wpd.2_5'Flank|NFATC4_uc010toy.1_5'Flank|NFATC4_uc010toz.1_5'Flank|NFATC4_uc010tpa.1_5'Flank|NFATC4_uc010tpb.1_5'Flank	NM_004554	NP_004545	Q14934	NFAC4_HUMAN	nuclear factor of activated T-cells,	432	RHD.|				cell differentiation|inflammatory response|transcription from RNA polymerase II promoter	cytoplasm|intermediate filament cytoskeleton|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(265;0.018)		CACCGGGCCCACTATGAGACA	0.612													8	30					0	0	0.004482	0	0
AKAP6	9472	broad.mit.edu	37	14	33014688	33014688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:33014688G>A	uc001wrq.2	+	4	999	c.829G>A	c.(829-831)GTA>ATA	p.V277I	AKAP6_uc010aml.2_Missense_Mutation_p.V274I	NM_004274	NP_004265	Q13023	AKAP6_HUMAN	A-kinase anchor protein 6	277					protein targeting	calcium channel complex|nuclear membrane|sarcoplasmic reticulum	protein kinase A binding|receptor binding			breast(6)|ovary(5)|lung(4)|skin(3)|large_intestine(2)|pancreas(1)	21	Breast(36;0.0388)|Prostate(35;0.15)		LUAD - Lung adenocarcinoma(48;0.00107)|Lung(238;0.00677)|STAD - Stomach adenocarcinoma(7;0.116)	GBM - Glioblastoma multiforme(265;0.019)		TTTACTTACGGTAGCTGCTGA	0.458													37	83					0	0	0.001951	0	0
SLC25A21	89874	broad.mit.edu	37	14	37153057	37153057	+	Missense_Mutation	SNP	G	A	A	rs149535012	by1000genomes	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:37153057G>A	uc001wtz.1	-	9	1124	c.814C>T	c.(814-816)CCC>TCC	p.P272S		NM_030631	NP_085134	Q9BQT8	ODC_HUMAN	solute carrier family 25 (mitochondrial	272	Solcar 3.				lysine catabolic process	integral to membrane|mitochondrial inner membrane	alpha-ketoglutarate transmembrane transporter activity|binding			skin(1)	1	Esophageal squamous(585;0.164)|Breast(36;0.179)|Hepatocellular(127;0.213)		Lung(8;2.16e-08)|LUAD - Lung adenocarcinoma(9;2.16e-07)|Epithelial(34;0.0112)|all cancers(34;0.0274)|LUSC - Lung squamous cell carcinoma(13;0.149)	GBM - Glioblastoma multiforme(112;0.00204)		ATAATCTTGGGAAGCAGGCCT	0.343													7	32					0	0	0.003080	0	0
NIN	51199	broad.mit.edu	37	14	51224663	51224663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:51224663G>A	uc001wym.2	-	18	3276	c.3085C>T	c.(3085-3087)CTC>TTC	p.L1029F	NIN_uc001wyi.2_Missense_Mutation_p.L1029F|NIN_uc001wyj.2_Intron|NIN_uc001wyk.2_Intron|NIN_uc010tqp.1_Missense_Mutation_p.L1035F|NIN_uc001wyo.2_Missense_Mutation_p.L1029F	NM_182946	NP_891991	Q8N4C6	NIN_HUMAN	ninein isoform 5	1029					centrosome localization	centrosome|microtubule	calcium ion binding|GTP binding|protein binding			skin(3)|ovary(1)|kidney(1)|central_nervous_system(1)	6	all_epithelial(31;0.00244)|Breast(41;0.127)					AGCATTGAGAGAGGAGATGTT	0.517			T	PDGFRB	MPD								89	61					0	0	0.003610	0	0
DLGAP5	9787	broad.mit.edu	37	14	55647412	55647412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:55647412G>A	uc001xbs.2	-	6	882	c.665C>T	c.(664-666)TCT>TTT	p.S222F	DLGAP5_uc001xbt.2_Missense_Mutation_p.S222F	NM_014750	NP_055565	Q15398	DLGP5_HUMAN	discs large homolog 7 isoform a	222					cell proliferation|cell-cell signaling|mitotic chromosome movement towards spindle pole|positive regulation of mitotic metaphase/anaphase transition	nucleus|spindle pole centrosome	phosphoprotein phosphatase activity|protein binding			ovary(1)|skin(1)	2						TGCTGTGGTAGATGAGACTGT	0.448													23	84					0	0	0.003954	0	0
JKAMP	51528	broad.mit.edu	37	14	59951795	59951796	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:59951795_59951796GG>AA	uc001xei.3	+	1	509_510	c.7_8GG>AA	c.(7-9)GGA>AAA	p.G3K	C14orf149_uc001xee.1_5'Flank|C14orf149_uc010trx.1_5'Flank|JKAMP_uc001xef.3_Intron|JKAMP_uc001xeh.3_Intron|JKAMP_uc001xeg.3_Missense_Mutation_p.G3K|JKAMP_uc010try.1_Intron|JKAMP_uc001xej.3_5'Flank	NM_001098625	NP_001092095	Q9P055	JKAMP_HUMAN	JNK1-associated membrane protein isoform 2	Error:Variant_position_missing_in_Q9P055_after_alignment					ER-associated protein catabolic process|response to unfolded protein	endoplasmic reticulum membrane|integral to membrane	ubiquitin protein ligase binding			breast(1)	1						GGAAATGAAAGGAGAAATTCAA	0.411													34	52					0	0	0.004672	0	0
PPM1A	5494	broad.mit.edu	37	14	60750007	60750007	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:60750007G>T	uc010apn.2	+	3	988	c.586G>T	c.(586-588)GCC>TCC	p.A196S	PPM1A_uc001xew.3_Missense_Mutation_p.A269S|PPM1A_uc001xex.3_Missense_Mutation_p.A196S|PPM1A_uc001xey.3_Missense_Mutation_p.A196S	NM_021003	NP_066283	P35813	PPM1A_HUMAN	protein phosphatase 1A isoform 1	196					cell cycle arrest|insulin receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein dephosphorylation|Wnt receptor signaling pathway	cytosol|nucleus|protein serine/threonine phosphatase complex	magnesium ion binding|manganese ion binding|protein serine/threonine phosphatase activity|signal transducer activity			skin(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.046)		TGTATCGAGGGCCCTTGGGGA	0.458													31	46					5.45727e-16	6.67657e-16	0.001512	1	0
SYT16	83851	broad.mit.edu	37	14	62462984	62462984	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:62462984T>C	uc001xfu.1	+	1	444	c.247T>C	c.(247-249)TCC>CCC	p.S83P	SYT16_uc010tsd.1_Missense_Mutation_p.S83P	NM_031914	NP_114120	Q17RD7	SYT16_HUMAN	synaptotagmin XIV-like	83										central_nervous_system(1)	1				OV - Ovarian serous cystadenocarcinoma(108;0.0438)|BRCA - Breast invasive adenocarcinoma(234;0.118)		GGATGCAAATTCCTTGTTTCT	0.393													21	76					0	0	0.001882	0	0
PLEKHG3	26030	broad.mit.edu	37	14	65209040	65209040	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:65209040C>T	uc001xho.1	+	16	3074	c.2805C>T	c.(2803-2805)CTC>CTT	p.L935L	PLEKHG3_uc001xhn.1_Silent_p.L879L|PLEKHG3_uc001xhp.2_Silent_p.L1056L|PLEKHG3_uc010aqh.1_Silent_p.L477L|PLEKHG3_uc001xhq.1_Silent_p.L440L	NM_015549	NP_056364	A1L390	PKHG3_HUMAN	pleckstrin homology domain containing, family G,	935					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(1)	1				all cancers(60;0.00802)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)|BRCA - Breast invasive adenocarcinoma(234;0.0485)		AGTACAGCCTCCGGATCAAGA	0.622													4	9					0	0	0.001168	0	0
FAM71D	161142	broad.mit.edu	37	14	67664893	67664893	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:67664893C>T	uc001xja.1	+	3	269	c.15C>T	c.(13-15)ACC>ACT	p.T5T	FAM71D_uc010tsv.1_RNA|FAM71D_uc001xiz.2_RNA|FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	5										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		AGAAGAACACCAGCAAGACTA	0.393													15	20					0	0	0.004007	0	0
MAP3K9	4293	broad.mit.edu	37	14	71199520	71199520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:71199520C>T	uc001xmm.2	-	11	2566	c.2566G>A	c.(2566-2568)GAA>AAA	p.E856K	MAP3K9_uc010ttk.1_Missense_Mutation_p.E584K|MAP3K9_uc001xmk.2_Missense_Mutation_p.E589K|MAP3K9_uc001xml.2_Missense_Mutation_p.E870K	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	856					activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		ACGACAATTTCATCGCTGTCG	0.602													13	9					0	0	0.001855	0	0
ENTPD5	957	broad.mit.edu	37	14	74433631	74433632	+	Silent	DNP	TC	CT	CT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:74433631_74433632TC>CT	uc010tuo.1	-	16	1597_1598	c.1286_1287GA>AG	c.(1285-1287)TGA>TAG	p.*429*	ENTPD5_uc001xpi.2_Intron	NM_001249	NP_001240	O75356	ENTP5_HUMAN	ectonucleoside triphosphate diphosphohydrolase 5	429					'de novo' posttranslational protein folding|ATP metabolic process|cell growth|cell proliferation|glycolysis|protein N-linked glycosylation|regulation of phosphatidylinositol 3-kinase cascade	endoplasmic reticulum lumen	guanosine-diphosphatase activity|uridine-diphosphatase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00394)		GTACGTGGCCTCAATGGGAGAT	0.505													19	24					0	0	0.004672	0	0
FCF1	51077	broad.mit.edu	37	14	75201622	75201622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:75201622C>T	uc001xqh.2	+	8	637	c.586C>T	c.(586-588)CCT>TCT	p.P196S	FCF1_uc001xqf.1_Missense_Mutation_p.P181S|FCF1_uc001xqg.2_RNA|FCF1_uc001xqi.2_RNA	NM_015962	NP_057046	Q9Y324	FCF1_HUMAN	FCF1 small subunit	196					rRNA processing	nucleolus				ovary(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.0037)		TTATGGAGCCCCTCGATTCTA	0.388													38	28					0	0	0.007835	0	0
TTLL5	23093	broad.mit.edu	37	14	76149932	76149932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:76149932G>A	uc001xrx.2	+	5	509	c.304G>A	c.(304-306)GGA>AGA	p.G102R	TTLL5_uc001xrw.1_Missense_Mutation_p.G102R|TTLL5_uc010ask.1_Missense_Mutation_p.G102R|TTLL5_uc001xrv.2_Missense_Mutation_p.G102R	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	102	TTL.				protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		AATGTGGACAGGATCCCACCT	0.458													25	22					0	0	0.007291	0	0
VIPAR	63894	broad.mit.edu	37	14	77893965	77893965	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:77893965C>T	uc001xtt.1	-	21	1814	c.1476G>A	c.(1474-1476)AAG>AAA	p.K492K	VIPAR_uc001xtu.1_Silent_p.K492K|VIPAR_uc010tvj.1_Silent_p.K443K|VIPAR_uc001xtv.1_Silent_p.K492K	NM_022067	NP_071350	Q9H9C1	VIPAR_HUMAN	hypothetical protein LOC63894	492					endosome to lysosome transport|intracellular protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	early endosome|late endosome|recycling endosome	protein binding			central_nervous_system(1)	1						CCACTTAATTCTTCCATCGAA	0.453													13	10					0	0	0.003163	0	0
ADCK1	57143	broad.mit.edu	37	14	78397985	78397985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:78397985C>T	uc001xui.2	+	10	1430	c.1331C>T	c.(1330-1332)GCC>GTC	p.A444V	ADCK1_uc001xuj.2_Missense_Mutation_p.A376V|ADCK1_uc001xul.2_Missense_Mutation_p.A151V	NM_020421	NP_065154	Q86TW2	ADCK1_HUMAN	aarF domain containing kinase 1 isoform a	451	Protein kinase.					extracellular region	ATP binding|protein serine/threonine kinase activity			stomach(2)|ovary(1)	3			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0376)		ATTGAGGCCGCCCTGGGCACC	0.627													14	13					0	0	0.002450	0	0
CYP46A1	10858	broad.mit.edu	37	14	100182481	100182481	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:100182481G>A	uc001ygo.2	+	9	852	c.852G>A	c.(850-852)GAG>GAA	p.E284E	CYP46A1_uc001ygp.2_Silent_p.E131E	NM_006668	NP_006659	Q9Y6A2	CP46A_HUMAN	cytochrome P450, family 46	284					bile acid biosynthetic process|cholesterol catabolic process|nervous system development|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	cholesterol 24-hydroxylase activity|electron carrier activity|heme binding|steroid hydroxylase activity				0		Melanoma(154;0.0866)|all_epithelial(191;0.179)				CAGCTGAAGAGGGAGCCCAGG	0.512													10	9					0	0	0.002450	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103465993	103465993	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr14:103465993C>A	uc001ymi.1	-	5	737	c.505G>T	c.(505-507)GAA>TAA	p.E169*		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	169	Protein kinase.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		AGCTTGTCTTCAAATTTGCTG	0.453													18	13					6.49762e-13	7.91503e-13	0.006122	1	0
LOC646214	646214	broad.mit.edu	37	15	21936799	21936799	+	RNA	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:21936799C>T	uc010tzj.1	-	1		c.3941G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						AAGGGATTTTCATTGAGGTAT	0.448													11	77					0	0	0.001368	0	0
LOC646214	646214	broad.mit.edu	37	15	21937946	21937946	+	RNA	SNP	C	T	T	rs142424875	by1000genomes	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:21937946C>T	uc010tzj.1	-	1		c.2794G>A				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						CTTCCTTTCTCTGTGCCTGAG	0.423													52	320					0	0	0.003610	0	0
LOC646214	646214	broad.mit.edu	37	15	21937970	21937970	+	RNA	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:21937970T>A	uc010tzj.1	-	1		c.2770A>T				NR_027053				Homo sapiens mRNA for p21-activated kinase 2 variant protein.												0						ATGGAGATGATTTTATGCCTG	0.438													30	352					0	0	0.003755	0	0
OR4M2	390538	broad.mit.edu	37	15	22369004	22369004	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:22369004C>T	uc010tzu.1	+	1	429	c.429C>T	c.(427-429)ATC>ATT	p.I143I	LOC727924_uc001yua.2_RNA|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	143	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		TCTGCTGTATCCTGGTGGCTC	0.507													42	136					0	0	0.002222	0	0
OR4N4	283694	broad.mit.edu	37	15	22382594	22382594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:22382594G>A	uc001yuc.1	+	7	1103	c.122G>A	c.(121-123)GGA>GAA	p.G41E	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Missense_Mutation_p.G41E	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATCCTCCCTGGAAATTTTCTC	0.443													53	169					0	0	0.003610	0	0
C15orf2	23742	broad.mit.edu	37	15	24921244	24921244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:24921244C>T	uc001ywo.2	+	1	704	c.230C>T	c.(229-231)GCT>GTT	p.A77V		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	77					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CTCCCTCGGGCTGCGGCCGCC	0.706													12	21					0	0	0.001368	0	0
SNORD115-13	100033450	broad.mit.edu	37	15	25438355	25438355	+	RNA	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:25438355C>T	uc001yzf.1	+	3		c.233C>T			SNORD115-13_uc001yzh.2_5'Flank|SNORD115-14_uc001yzj.1_5'Flank					Homo sapiens clone Rt-11 SNURF-SNRPN mRNA, downstream untranslated exons, alternatively spliced.												0						TGCTGAGCCCCTGGTGCACTG	0.597													6	21					0	0	0.001168	0	0
HERC2	8924	broad.mit.edu	37	15	28538093	28538093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:28538093G>A	uc001zbj.2	-	4	369	c.263C>T	c.(262-264)CCT>CTT	p.P88L	HERC2_uc001zbl.1_5'UTR	NM_004667	NP_004658	O95714	HERC2_HUMAN	hect domain and RLD 2	88					DNA repair|intracellular protein transport|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	nucleus	guanyl-nucleotide exchange factor activity|heme binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(4)|lung(4)|skin(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	13		all_lung(180;1.3e-11)|Breast(32;0.000194)|Colorectal(260;0.227)		all cancers(64;3.93e-09)|Epithelial(43;9.99e-08)|BRCA - Breast invasive adenocarcinoma(123;0.0271)|GBM - Glioblastoma multiforme(186;0.0497)|Lung(196;0.199)		TATAGGTGCAGGAGTTTCTTC	0.383													14	31					0	0	0.002450	0	0
RYR3	6263	broad.mit.edu	37	15	33831581	33831581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:33831581C>T	uc001zhi.2	+	6	534	c.464C>T	c.(463-465)GCT>GTT	p.A155V	RYR3_uc010bar.2_Missense_Mutation_p.A155V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	155	Cytoplasmic (By similarity).|MIR 1.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ATACATCCTGCTTCCAAACAG	0.458													7	5					0	0	0.004482	0	0
RYR3	6263	broad.mit.edu	37	15	33842363	33842363	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:33842363G>A	uc001zhi.2	+	10	888	c.818G>A	c.(817-819)TGG>TAG	p.W273*	RYR3_uc010bar.2_Nonsense_Mutation_p.W273*	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	273	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CTGCCCAGCTGGAGTGGCAGT	0.448													7	14					0	0	0.006214	0	0
CASC5	57082	broad.mit.edu	37	15	40901050	40901050	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:40901050C>T	uc010bbs.1	+	5	302	c.141C>T	c.(139-141)TCC>TCT	p.S47S	CASC5_uc010ucq.1_5'UTR|CASC5_uc001zme.2_Silent_p.S47S|CASC5_uc010bbt.1_Silent_p.S47S	NM_170589	NP_733468	Q8NG31	CASC5_HUMAN	cancer susceptibility candidate 5 isoform 1	47	Interaction with BUB1 and BUB1B.				acrosome assembly|attachment of spindle microtubules to kinetochore|cell division|CenH3-containing nucleosome assembly at centromere|mitotic prometaphase|spindle assembly checkpoint	acrosomal vesicle|condensed chromosome kinetochore|cytosol|nucleoplasm	protein binding			breast(3)|central_nervous_system(1)|skin(1)	5		all_cancers(109;2.03e-18)|all_epithelial(112;4.26e-15)|Lung NSC(122;1.12e-10)|all_lung(180;2.59e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;4.99e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0861)|COAD - Colon adenocarcinoma(120;0.211)		CTTAGGAATCCAATGCTTTGA	0.313													5	19					0	0	0.000602	0	0
VPS18	57617	broad.mit.edu	37	15	41192210	41192210	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:41192210C>T	uc001zne.2	+	4	1533	c.1194C>T	c.(1192-1194)GTC>GTT	p.V398V		NM_020857	NP_065908	Q9P253	VPS18_HUMAN	vacuolar protein sorting 18	398					endosome organization|lysosome organization|protein transport	HOPS complex|late endosome membrane|lysosomal membrane	metal ion binding|protein binding			ovary(2)|large_intestine(1)	3		all_cancers(109;1.35e-17)|all_epithelial(112;3.78e-15)|Lung NSC(122;9.68e-11)|all_lung(180;2.25e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.0946)		GBM - Glioblastoma multiforme(113;1.07e-05)|COAD - Colon adenocarcinoma(120;0.15)|BRCA - Breast invasive adenocarcinoma(123;0.164)		CCCGAGATGTCTGGCGCACCT	0.627													19	61					0	0	0.002780	0	0
RPAP1	26015	broad.mit.edu	37	15	41817327	41817327	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:41817327C>G	uc001zod.2	-	15	2061	c.1937G>C	c.(1936-1938)CGG>CCG	p.R646P	RPAP1_uc001zoc.2_5'Flank	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	646						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CAGGCGGCTCCGGAGATCAAA	0.592													7	12					0	0	0.004482	0	0
MGA	23269	broad.mit.edu	37	15	42059094	42059094	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:42059094C>T	uc010ucy.1	+	24	8995	c.8814C>T	c.(8812-8814)CTC>CTT	p.L2938L	MGA_uc010ucz.1_Silent_p.L2729L	NM_001164273	NP_001157745	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 1	2899						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		AGGATTCCCTCCTTTCCAACA	0.458													13	32					0	0	0.002450	0	0
VPS39	23339	broad.mit.edu	37	15	42458375	42458375	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:42458375G>A	uc001zpd.2	-	17	1846	c.1695C>T	c.(1693-1695)TTC>TTT	p.F565F	VPS39_uc001zpc.2_Silent_p.F554F|VPS39_uc001zpb.2_5'UTR	NM_015289	NP_056104	Q96JC1	VPS39_HUMAN	vacuolar protein sorting 39	565					protein transport	HOPS complex|late endosome membrane|lysosomal membrane	small GTPase regulator activity			ovary(1)|pancreas(1)|skin(1)	3		all_cancers(109;6.78e-16)|all_epithelial(112;1.81e-14)|Lung NSC(122;5.01e-09)|all_lung(180;2.24e-08)|Melanoma(134;0.0574)|Colorectal(260;0.152)		GBM - Glioblastoma multiforme(94;3.05e-06)		CATCTTCTGGGAAGTCTCTCA	0.498													22	38					0	0	0.003954	0	0
UBR1	197131	broad.mit.edu	37	15	43367225	43367225	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:43367225G>A	uc001zqq.2	-	4	546	c.480C>T	c.(478-480)GGC>GGT	p.G160G	UBR1_uc010udk.1_Silent_p.G160G	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	160	UBR-type.				cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		CACAAAAAGGGCCAGTTTTCC	0.363													76	146					0	0	0.003610	0	0
CCNDBP1	23582	broad.mit.edu	37	15	43478431	43478432	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:43478431_43478432GG>AA	uc001zqv.2	+	3	480	c.249_splice	c.e3+1	p.Q83_splice	CCNDBP1_uc001zqu.2_Splice_Site|CCNDBP1_uc010bdc.2_Splice_Site_p.Q83_splice|CCNDBP1_uc010bdb.2_Intron|CCNDBP1_uc010udl.1_Splice_Site|CCNDBP1_uc001zqw.2_Splice_Site|CCNDBP1_uc001zqx.2_Intron|CCNDBP1_uc010bdd.2_Splice_Site|CCNDBP1_uc001zqy.2_Splice_Site	NM_012142	NP_036274	O95273	CCDB1_HUMAN	cyclin D-type binding-protein 1 isoform 1						cell cycle	cytoplasm|nucleus	protein binding			ovary(1)|kidney(1)	2		all_cancers(109;3.31e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.42e-07)		CGTCTCCACAGGTGGGCTTCAC	0.53													6	5					0	0	0.004672	0	0
TP53BP1	7158	broad.mit.edu	37	15	43720298	43720298	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:43720298G>A	uc001zrs.2	-	18	3877	c.3729C>T	c.(3727-3729)ATC>ATT	p.I1243I	TP53BP1_uc010udp.1_Silent_p.I1243I|TP53BP1_uc001zrq.3_Silent_p.I1248I|TP53BP1_uc001zrr.3_Silent_p.I1248I|TP53BP1_uc010udq.1_Silent_p.I1248I	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	1243					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		GTACTTCCCGGATTGTTCTCA	0.423								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					37	70					0	0	0.004878	0	0
PPIP5K1	9677	broad.mit.edu	37	15	43827034	43827034	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:43827034G>A	uc001zrw.2	-	31	4323	c.4140C>T	c.(4138-4140)ATC>ATT	p.I1380I	PPIP5K1_uc001zrx.1_Silent_p.I1353I|PPIP5K1_uc001zru.2_Silent_p.I1355I|PPIP5K1_uc001zry.3_Silent_p.I1355I|PPIP5K1_uc001zrv.2_Silent_p.I1141I	NM_001130858	NP_001124330	Q6PFW1	VIP1_HUMAN	histidine acid phosphatase domain containing 2A	1380					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity				0						GGTATGGCTGGATGACCTCCT	0.527													32	62					0	0	0.003271	0	0
CASC4	113201	broad.mit.edu	37	15	44581414	44581414	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:44581414C>T	uc001zto.1	+	1	486	c.187C>T	c.(187-189)CTG>TTG	p.L63L	CASC4_uc001ztp.2_Silent_p.L63L|CASC4_uc001ztq.2_Silent_p.L63L|CASC4_uc010bdu.1_RNA	NM_138423	NP_612432	Q6P4E1	CASC4_HUMAN	cancer susceptibility candidate 4 isoform a	63	Lumenal (Potential).|Potential.					integral to membrane				ovary(1)	1		all_cancers(109;1.69e-13)|all_epithelial(112;3.94e-11)|Lung NSC(122;1.66e-07)|all_lung(180;1.47e-06)|Melanoma(134;0.027)		all cancers(107;2.91e-20)|GBM - Glioblastoma multiforme(94;1.57e-06)|COAD - Colon adenocarcinoma(120;0.217)|Colorectal(105;0.237)		CCGCGGGCGGCTGGAAAAGCG	0.642													9	22					0	0	0.000673	0	0
SCG3	29106	broad.mit.edu	37	15	51993421	51993421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:51993421G>A	uc002abh.2	+	10	1595	c.1187G>A	c.(1186-1188)GGA>GAA	p.G396E	SCG3_uc010ufz.1_Missense_Mutation_p.G164E	NM_013243	NP_037375	Q8WXD2	SCG3_HUMAN	secretogranin III isoform 1 precursor	396					platelet activation|platelet degranulation	extracellular region|stored secretory granule				ovary(1)	1				all cancers(107;0.00488)		AACCCAGGAGGAAAGACAGAT	0.433													9	23					0	0	0.006214	0	0
CGNL1	84952	broad.mit.edu	37	15	57838369	57838369	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:57838369G>A	uc002aeg.2	+	18	3781	c.3705G>A	c.(3703-3705)GAG>GAA	p.E1235E	CGNL1_uc010bfw.2_Silent_p.E1235E	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	1235	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TGCAGAGGGAGCTGGAGGAGC	0.557													6	4					0	0	0.001168	0	0
NARG2	79664	broad.mit.edu	37	15	60758807	60758807	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:60758807G>A	uc002agp.2	-	5	749	c.514C>T	c.(514-516)CGT>TGT	p.R172C	NARG2_uc002ago.2_Missense_Mutation_p.R35C|NARG2_uc010bgk.2_Missense_Mutation_p.R172C|NARG2_uc002agr.1_Missense_Mutation_p.R172C	NM_024611	NP_078887	Q659A1	NARG2_HUMAN	NMDA receptor regulated 2 isoform a	172						nucleus				ovary(1)|lung(1)	2						GTGAAGAGACGGGCATCATCA	0.368													18	35					0	0	0.001882	0	0
TLN2	83660	broad.mit.edu	37	15	62942303	62942303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:62942303C>T	uc002alb.3	+	2	157	c.157C>T	c.(157-159)CTT>TTT	p.L53F		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	53					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						TGGACTCTTTCTTTCGGATGA	0.493													20	50					0	0	0.001523	0	0
PIF1	80119	broad.mit.edu	37	15	65110166	65110166	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:65110166C>T	uc002ant.2	-	11	1719	c.1653G>A	c.(1651-1653)GCG>GCA	p.A551A	PIF1_uc002anr.2_Silent_p.A99A|PIF1_uc002ans.2_Silent_p.A242A|PIF1_uc010uiq.1_Silent_p.A551A	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	551	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						GGATGGACATCGCCCAGGCCA	0.627													4	8					0	0	0.000602	0	0
PTPLAD1	51495	broad.mit.edu	37	15	65862521	65862521	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:65862521G>A	uc002apc.2	+	8	901	c.753G>A	c.(751-753)TGG>TGA	p.W251*	PTPLAD1_uc002apb.1_RNA|PTPLAD1_uc010uiw.1_Nonsense_Mutation_p.W196*	NM_016395	NP_057479	Q9P035	HACD3_HUMAN	protein tyrosine phosphatase-like A domain	251	Helical; (Potential).				activation of JUN kinase activity|fatty acid biosynthetic process|I-kappaB kinase/NF-kappaB cascade|Rac protein signal transduction	endoplasmic reticulum membrane|integral to membrane	GTPase activator activity|lyase activity|protein binding				0						TTTATTTGTGGAGTGCAATTG	0.383													16	36					0	0	0.007413	0	0
ZWILCH	55055	broad.mit.edu	37	15	66811271	66811271	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:66811271G>A	uc002aqb.2	+	5	621	c.375G>A	c.(373-375)AAG>AAA	p.K125K	RPL4_uc002apx.2_Intron|ZWILCH_uc010bhu.1_Silent_p.K11K|ZWILCH_uc002aqa.2_Silent_p.K11K|ZWILCH_uc010bhv.2_Silent_p.K11K	NM_017975	NP_060445	Q9H900	ZWILC_HUMAN	Zwilch	125					cell division|mitotic cell cycle checkpoint|mitotic prometaphase	condensed chromosome kinetochore|cytosol	protein binding			ovary(1)	1						CCCATTTGAAGATTAATCTGC	0.398													8	26					0	0	0.003080	0	0
IQCH	64799	broad.mit.edu	37	15	67664852	67664852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:67664852G>A	uc002aqo.1	+	9	1204	c.1157G>A	c.(1156-1158)AGA>AAA	p.R386K	IQCH_uc010ujv.1_Missense_Mutation_p.R205K|IQCH_uc002aqn.1_Missense_Mutation_p.R213K|IQCH_uc002aqq.1_Missense_Mutation_p.R134K|IQCH_uc002aqp.1_Missense_Mutation_p.R138K	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	386	IQ.									skin(3)|ovary(1)	4				Colorectal(3;0.0856)		TACAAAGCAAGAAAATTCTTC	0.443													23	48					0	0	0.002780	0	0
CLN6	54982	broad.mit.edu	37	15	68504096	68504096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:68504096G>A	uc002arf.2	-	4	561	c.403C>T	c.(403-405)CAC>TAC	p.H135Y	CLN6_uc010ujy.1_Intron|CLN6_uc010ujz.1_Missense_Mutation_p.H167Y	NM_017882	NP_060352	Q9NWW5	CLN6_HUMAN	CLN6 protein	135					cell death|cholesterol metabolic process|ganglioside metabolic process|glycosaminoglycan metabolic process|lysosomal lumen acidification|positive regulation of proteolysis|protein catabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	protein homodimerization activity				0						AGCAGGCGGTGGTTGACAGAG	0.607													30	61					0	0	0.002096	0	0
TMEM202	338949	broad.mit.edu	37	15	72699092	72699092	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:72699092G>A	uc002auq.2	+	3	487	c.487G>A	c.(487-489)GCT>ACT	p.A163T	TMEM202_uc002aur.2_RNA	NM_001080462	NP_001073931	A6NGA9	TM202_HUMAN	transmembrane protein 202	163	Helical; (Potential).					integral to membrane				central_nervous_system(1)|skin(1)	2						CTTCATCTCAGGTACAGACCT	0.433													45	110					0	0	0.003610	0	0
CD276	80381	broad.mit.edu	37	15	73996205	73996205	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:73996205C>T	uc002avv.1	+	5	1173	c.939C>T	c.(937-939)CTC>CTT	p.L313L	CD276_uc010bjd.1_Silent_p.L167L|CD276_uc002avu.1_Silent_p.L313L|CD276_uc002avw.1_Intron|CD276_uc010ulb.1_Silent_p.L259L|CD276_uc002avx.2_5'Flank	NM_001024736	NP_001019907	Q5ZPR3	CD276_HUMAN	CD276 antigen isoform a	313	Ig-like V-type 2.|Extracellular (Potential).				cell proliferation|immune response|positive regulation of interferon-gamma biosynthetic process|positive regulation of T cell proliferation|regulation of immune response|T cell activation	external side of plasma membrane|integral to membrane	receptor binding			skin(1)	1						GCACGGCCCTCTTCCCGGACC	0.632													5	12					0	0	0.000602	0	0
C15orf39	56905	broad.mit.edu	37	15	75500451	75500451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:75500451C>T	uc002azp.3	+	2	2382	c.2062C>T	c.(2062-2064)CCC>TCC	p.P688S	C15orf39_uc002azq.3_Missense_Mutation_p.P688S|C15orf39_uc002azr.3_Missense_Mutation_p.P86S	NM_015492	NP_056307	Q6ZRI6	CO039_HUMAN	hypothetical protein LOC56905	688											0						CACATCTGGGCCCATTGGACT	0.622													6	24					0	0	0.003080	0	0
TBC1D2B	23102	broad.mit.edu	37	15	78316504	78316504	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:78316504C>T	uc002bcy.3	-	6	1464	c.1464G>A	c.(1462-1464)AGG>AGA	p.R488R	TBC1D2B_uc010bla.2_Silent_p.R488R	NM_144572	NP_653173	Q9UPU7	TBD2B_HUMAN	TBC1 domain family, member 2B isoform a	488	Potential.					intracellular	protein binding|Rab GTPase activator activity			ovary(1)|large_intestine(1)|breast(1)	3						TTACTTTCAGCCTGTCCAGTT	0.642													9	17					0	0	0.006214	0	0
DNAJA4	55466	broad.mit.edu	37	15	78567844	78567844	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:78567844G>A	uc002bdj.1	+	5	768	c.651G>A	c.(649-651)ATG>ATA	p.M217I	DNAJA4_uc002bdi.2_Missense_Mutation_p.M246I|DNAJA4_uc002bdk.2_Missense_Mutation_p.M190I|DNAJA4_uc002bdm.1_Missense_Mutation_p.M1I	NM_001130182	NP_001123654	Q8WW22	DNJA4_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 4	217					protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			skin(1)	1						TCATAGGTATGAAAGATGGGC	0.413													16	20					0	0	0.004990	0	0
CHRNB4	1143	broad.mit.edu	37	15	78923470	78923471	+	Silent	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:78923470_78923471GG>AA	uc002bed.1	-	4	418_419	c.306_307CC>TT	c.(304-309)ATCCTG>ATTTTG	p.102_103IL>IL	CHRNB4_uc002bee.1_Silent_p.102_103IL>IL|CHRNB4_uc010blh.1_5'UTR	NM_000750	NP_000741	P30926	ACHB4_HUMAN	cholinergic receptor, nicotinic, beta 4	102_103	Extracellular (Potential).				regulation of neurotransmitter secretion|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity				0						GGGATCCTCAGGATGTTCACAC	0.589													13	38					0	0	0.004672	0	0
BCL2A1	597	broad.mit.edu	37	15	80263401	80263402	+	Missense_Mutation	DNP	GG	TA	TA	rs147300718		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:80263401_80263402GG>TA	uc002bfc.3	-	1	242_243	c.60_61CC>TA	c.(58-63)GTCCTA>GTTATA	p.L21I	BCL2A1_uc002bfd.3_Missense_Mutation_p.L21I	NM_004049	NP_004040	Q16548	B2LA1_HUMAN	BCL2-related protein A1 isoform 1	21					anti-apoptosis|apoptosis	cytoplasm	protein binding			pancreas(1)	1						GGTATCTGTAGGACGCACTGCA	0.465													7	38					0	0	0.004672	0	0
KIAA1199	57214	broad.mit.edu	37	15	81171205	81171206	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:81171205_81171206GG>AA	uc002bfw.1	+	3	498_499	c.238_239GG>AA	c.(238-240)GGA>AAA	p.G80K	KIAA1199_uc010unn.1_Missense_Mutation_p.G80K	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	80	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						CATCTCAGAGGGAGGTAAGCCA	0.545													21	50					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	15	84945439	84945439	+	RNA	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:84945439C>T	uc002bke.1	-	1		c.1779G>A								Homo sapiens cDNA FLJ34196 fis, clone FCBBF3019437.																		TAGCAGTGGCCCTGGATTCAA	0.502													11	23					0	0	0.000978	0	0
NTRK3	4916	broad.mit.edu	37	15	88423632	88423632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:88423632G>A	uc002bme.1	-	18	2365	c.2203C>T	c.(2203-2205)CGC>TGC	p.R735C	NTRK3_uc002bmh.2_Missense_Mutation_p.R713C|NTRK3_uc002bmf.1_Missense_Mutation_p.R721C	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	735	Cytoplasmic (Potential).|Protein kinase.		R -> F (in a lung large cell carcinoma sample; somatic mutation; requires 2 nucleotide substitutions).		transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity	p.R721F(1)	ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGCATCCAGCGAATGGGGAGC	0.507			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			9	14					0	0	0.004482	0	0
MIR7-2	407044	broad.mit.edu	37	15	89155069	89155069	+	RNA	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:89155069G>A	hsa-mir-7-2|MI0000264	+			c.14G>A			uc010upm.1_RNA																	0						GATACAGAGTGGACCGGCTGG	0.587													7	7					0	0	0.004482	0	0
HAPLN3	145864	broad.mit.edu	37	15	89422478	89422478	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:89422478G>A	uc002bnc.2	-	4	644	c.516C>T	c.(514-516)TCC>TCT	p.S172S	HAPLN3_uc002bne.2_RNA|HAPLN3_uc002bnd.2_Silent_p.S234S	NM_178232	NP_839946	Q96S86	HPLN3_HUMAN	hyaluronan and proteoglycan link protein 3	172	Link 1.				cell adhesion	proteinaceous extracellular matrix	hyaluronic acid binding				0	Lung NSC(78;0.0392)|all_lung(78;0.077)					GCCCGTTGGGGGACTGGTAAG	0.652											OREG0023445	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	24					0	0	0.006122	0	0
PLIN1	5346	broad.mit.edu	37	15	90213326	90213326	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:90213326C>T	uc010upx.1	-	5	593	c.483G>A	c.(481-483)GCG>GCA	p.A161A	PLIN1_uc002boh.2_Silent_p.A161A	NM_001145311	NP_001138783	O60240	PLIN1_HUMAN	perilipin 1	161					triglyceride catabolic process	lipid particle	lipid binding			central_nervous_system(1)|skin(1)	2						CAGCAAATTCCGCAGTGTCTC	0.632													9	10					0	0	0.001368	0	0
MESP2	145873	broad.mit.edu	37	15	90321454	90321454	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:90321454C>T	uc002bon.2	+	2	1083	c.1083C>T	c.(1081-1083)GCC>GCT	p.A361A	MESP2_uc010uqa.1_Silent_p.A63A	NM_001039958	NP_001035047	Q0VG99	MESP2_HUMAN	mesoderm posterior 2 homolog	361					Notch signaling pathway	nucleus	DNA binding				0	Lung NSC(78;0.0221)|all_lung(78;0.0448)		BRCA - Breast invasive adenocarcinoma(143;0.0146)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)			CGGGCGCCGCCTTCCAGCTCA	0.657													13	12					0	0	0.001855	0	0
CHD2	1106	broad.mit.edu	37	15	93543789	93543789	+	Silent	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:93543789G>T	uc002bsp.2	+	32	4631	c.4056G>T	c.(4054-4056)GTG>GTT	p.V1352V	CHD2_uc002bso.1_Silent_p.V1352V	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	1352					regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			AAAACAAAGTGCCCAGGCTGA	0.423													18	28					2.48551e-13	3.03207e-13	0.004990	1	0
ARRDC4	91947	broad.mit.edu	37	15	98512492	98512492	+	Silent	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:98512492A>G	uc010bom.2	+	5	924	c.765A>G	c.(763-765)CGA>CGG	p.R255R	ARRDC4_uc002bui.3_Silent_p.R168R	NM_183376	NP_899232	Q8NCT1	ARRD4_HUMAN	arrestin domain containing 4	255					signal transduction						0	Melanoma(26;0.00539)|Lung NSC(78;0.0125)|all_lung(78;0.0222)		OV - Ovarian serous cystadenocarcinoma(32;0.0417)			CCAATGTGCGAGGAAACCACA	0.468													13	20					0	0	0.002450	0	0
SELS	55829	broad.mit.edu	37	15	101814870	101814870	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:101814870C>T	uc010use.1	-	4	413	c.335G>A	c.(334-336)AGG>AAG	p.R112K	SELS_uc010usf.1_Missense_Mutation_p.R112K	NM_203472	NP_982298	Q9BQE4	SELS_HUMAN	selenoprotein S	112					anti-apoptosis|cell redox homeostasis|cellular response to insulin stimulus|cellular response to lipopolysaccharide|cellular response to oxidative stress|endoplasmic reticulum unfolded protein response|ER overload response|ER-associated protein catabolic process|negative regulation of acute inflammatory response to antigenic stimulus|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of interleukin-6 production|negative regulation of nitric-oxide synthase biosynthetic process|negative regulation of tumor necrosis factor production|regulation of gluconeogenesis|regulation of nitric oxide metabolic process|response to glucose stimulus|response to redox state|retrograde protein transport, ER to cytosol	integral to endoplasmic reticulum membrane|low-density lipoprotein particle|microsome|plasma membrane|very-low-density lipoprotein particle	antioxidant activity|enzyme binding|receptor activity|selenium binding				0	Lung NSC(78;0.00156)|all_lung(78;0.00195)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.00113)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTTCTGTCTCCTTTTTTCTTC	0.408													8	14					0	0	0.006214	0	0
WDR90	197335	broad.mit.edu	37	16	708548	708548	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:708548C>T	uc002cii.1	+	23	2844	c.2790C>T	c.(2788-2790)CCC>CCT	p.P930P	WDR90_uc002cij.1_Intron|WDR90_uc002cik.1_Silent_p.P457P|WDR90_uc002cil.1_RNA|WDR90_uc002cim.1_Silent_p.P104P|WDR90_uc002cin.1_5'Flank	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	930	WD 10.									ovary(1)	1		Hepatocellular(780;0.0218)				ACCCTGAGCCCTGCCCCTCCT	0.662													14	29					0	0	0.001216	0	0
CLCN7	1186	broad.mit.edu	37	16	1505732	1505732	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:1505732G>A	uc002clv.2	-	11	1091	c.981C>T	c.(979-981)ATC>ATT	p.I327I	CLCN7_uc002clw.2_Silent_p.I303I	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	327	Helical; (By similarity).					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				AGGAACTTACGATCCTCCAGG	0.637													13	33					0	0	0.003163	0	0
PTX4	390667	broad.mit.edu	37	16	1537417	1537417	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:1537417C>T	uc010uvf.1	-	2	681	c.681G>A	c.(679-681)GGG>GGA	p.G227G		NM_001013658	NP_001013680	Q96A99	PTX4_HUMAN	neuronal pentraxin II-like	232						extracellular region	metal ion binding				0						GCTCCCGCCTCCCTTGGAGAG	0.682													11	18					0	0	0.001855	0	0
TSC2	7249	broad.mit.edu	37	16	2125886	2125887	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:2125886_2125887CC>TT	uc002con.2	+	23	2738_2739	c.2632_2633CC>TT	c.(2632-2634)CCC>TTC	p.P878F	TSC2_uc010bsd.2_Missense_Mutation_p.P878F|TSC2_uc002coo.2_Missense_Mutation_p.P878F|TSC2_uc010uvv.1_Missense_Mutation_p.P841F|TSC2_uc010uvw.1_Missense_Mutation_p.P829F|TSC2_uc002cop.2_Missense_Mutation_p.P678F	NM_000548	NP_000539	P49815	TSC2_HUMAN	tuberous sclerosis 2 isoform 1	878					cell cycle arrest|endocytosis|heart development|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|negative regulation of cell size|negative regulation of phosphatidylinositol 3-kinase cascade|negative regulation of protein kinase B signaling cascade|negative regulation of TOR signaling cascade|negative regulation of Wnt receptor signaling pathway|nerve growth factor receptor signaling pathway|neural tube closure|phosphatidylinositol-mediated signaling|positive chemotaxis|protein import into nucleus|protein kinase B signaling cascade|regulation of endocytosis|regulation of insulin receptor signaling pathway|regulation of small GTPase mediated signal transduction	Golgi apparatus|nucleus|perinuclear region of cytoplasm|TSC1-TSC2 complex	GTPase activator activity|protein homodimerization activity			central_nervous_system(4)|lung(3)|ovary(2)|pancreas(1)	10		Hepatocellular(780;0.0202)				GTACACCAACCCCTCCAAGTGA	0.658			D|Mis|N|F|S			hamartoma|renal cell			Tuberous_Sclerosis				15	17					0	0	0.004672	0	0
SRRM2	23524	broad.mit.edu	37	16	2811958	2811958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:2811958C>T	uc002crk.2	+	11	1978	c.1429C>T	c.(1429-1431)CCC>TCC	p.P477S	SRRM2_uc002crj.1_Missense_Mutation_p.P381S|SRRM2_uc002crl.1_Missense_Mutation_p.P477S|SRRM2_uc010bsu.1_Missense_Mutation_p.P381S	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	477	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						TTCTCATACCCCCTCCCGTAG	0.562													11	44					0	0	0.000978	0	0
OR1F1	4992	broad.mit.edu	37	16	3254873	3254873	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:3254873C>T	uc010uwu.1	+	1	627	c.627C>T	c.(625-627)ACC>ACT	p.T209T		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCATGATCACCCCATTTCTTT	0.502													25	42					0	0	0.004656	0	0
MEFV	4210	broad.mit.edu	37	16	3304686	3304686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:3304686C>T	uc002cun.1	-	2	422	c.382G>A	c.(382-384)GAG>AAG	p.E128K		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	128					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CCGTTCCCCTCGTTCCCCTCG	0.677													12	18					0	0	0.001368	0	0
BTBD12	84464	broad.mit.edu	37	16	3641088	3641088	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:3641088T>C	uc002cvp.2	-	12	3178	c.2551A>G	c.(2551-2553)ATG>GTG	p.M851V		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	851	Potential.|Interaction with PLK1 and TERF2-TERF2IP.|Glu-rich.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						ATTTCTTCCATTTCTGCTTCA	0.502								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				30	51					0	0	0.006320	0	0
ABAT	18	broad.mit.edu	37	16	8870231	8870231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:8870231G>A	uc002czc.3	+	14	1319	c.1153G>A	c.(1153-1155)GAC>AAC	p.D385N	ABAT_uc002czd.3_Missense_Mutation_p.D385N|ABAT_uc010buh.2_Missense_Mutation_p.D327N|ABAT_uc010bui.2_Missense_Mutation_p.D385N	NM_020686	NP_065737	P80404	GABT_HUMAN	4-aminobutyrate aminotransferase precursor	385					behavioral response to cocaine|gamma-aminobutyric acid catabolic process|neurotransmitter catabolic process|neurotransmitter secretion	4-aminobutyrate transaminase complex|mitochondrial matrix	(S)-3-amino-2-methylpropionate transaminase activity|4-aminobutyrate transaminase activity|protein homodimerization activity|pyridoxal phosphate binding|succinate-semialdehyde dehydrogenase binding			upper_aerodigestive_tract(1)	1					Divalproex sodium(DB00510)|Isoniazid(DB00951)|L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)|Pyruvic acid(DB00119)|Tiagabine(DB00906)|Valproic Acid(DB00313)|Vigabatrin(DB01080)	CTGGCTGGGGGACCCGTCCAA	0.582													27	26					0	0	0.001512	0	0
RSL1D1	26156	broad.mit.edu	37	16	11931870	11931870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:11931870G>A	uc002dbp.1	-	9	1320	c.1247C>T	c.(1246-1248)CCA>CTA	p.P416L	RSL1D1_uc010buv.1_Missense_Mutation_p.P415L|RSL1D1_uc010uyw.1_Missense_Mutation_p.P196L	NM_015659	NP_056474	O76021	RL1D1_HUMAN	ribosomal L1 domain containing 1	416					regulation of protein localization|translation	large ribosomal subunit|nucleolus	protein binding|RNA binding|structural constituent of ribosome				0						tgcagcttttggggtctcaga	0.149													95	176					0	0	0.003610	0	0
PDILT	204474	broad.mit.edu	37	16	20376851	20376851	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:20376851G>A	uc002dhc.1	-	9	1351	c.1128C>T	c.(1126-1128)TCC>TCT	p.S376S		NM_174924	NP_777584	Q8N807	PDILT_HUMAN	protein disulfide isomerase-like, testis	376					cell differentiation|cell redox homeostasis|multicellular organismal development|spermatogenesis	endoplasmic reticulum	isomerase activity			large_intestine(1)	1						TCTCTTCACTGGATTGATGTT	0.453													30	69					0	0	0.002836	0	0
ACSM2B	348158	broad.mit.edu	37	16	20548594	20548594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:20548594C>T	uc002dhj.3	-	15	1930	c.1720G>A	c.(1720-1722)GCC>ACC	p.A574T	ACSM2B_uc002dhk.3_Missense_Mutation_p.A574T	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	574					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TGCGCACGGGCTTTTCCGGAC	0.463													64	134					0	0	0.003610	0	0
ACSM1	116285	broad.mit.edu	37	16	20702490	20702490	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:20702490G>A	uc002dhm.1	-	1	89	c.21C>T	c.(19-21)TTC>TTT	p.F7F	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.F7F	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	7					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						AGAGGGTCCGGAACCTCATTA	0.532													33	74					0	0	0.004289	0	0
DNAH3	55567	broad.mit.edu	37	16	21031009	21031009	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:21031009C>T	uc010vbe.1	-	41	5959	c.5959G>A	c.(5959-5961)GAT>AAT	p.D1987N		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1987					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TGGTTATCATCCATGCCCATG	0.423													19	41					0	0	0.001216	0	0
DNAH3	55567	broad.mit.edu	37	16	21042461	21042461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:21042461G>A	uc010vbe.1	-	37	5345	c.5345C>T	c.(5344-5346)TCA>TTA	p.S1782L		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1782	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ATCAGAGAGTGAAGACGCTTG	0.463													17	32					0	0	0.006122	0	0
HS3ST2	9956	broad.mit.edu	37	16	22926633	22926633	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:22926633T>G	uc002dli.2	+	2	926	c.854T>G	c.(853-855)ATG>AGG	p.M285R	HS3ST2_uc002dlj.2_RNA	NM_006043	NP_006034	Q9Y278	HS3S2_HUMAN	heparan sulfate D-glucosaminyl	285	Lumenal (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 2 activity			ovary(1)|pancreas(1)	2				GBM - Glioblastoma multiforme(48;0.0299)		GCCGGCGAGATGGGGCGAGTC	0.522													24	87					0	0	0.003330	0	0
RBBP6	5930	broad.mit.edu	37	16	24580361	24580361	+	Missense_Mutation	SNP	C	T	T	rs146591085	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:24580361C>T	uc002dmh.2	+	17	3390	c.2350C>T	c.(2350-2352)CGT>TGT	p.R784C	RBBP6_uc010vcb.1_Missense_Mutation_p.R651C|RBBP6_uc002dmi.2_Missense_Mutation_p.R750C|RBBP6_uc010bxr.2_Intron|RBBP6_uc002dmk.2_Missense_Mutation_p.R617C	NM_006910	NP_008841	Q7Z6E9	RBBP6_HUMAN	retinoblastoma-binding protein 6 isoform 1	784					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	chromosome|nucleolus|ubiquitin ligase complex	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|pancreas(1)	4				GBM - Glioblastoma multiforme(48;0.0518)		TCCTAATAAACGTAATGTACC	0.413													9	17					0	0	0.000978	0	0
JMJD5	79831	broad.mit.edu	37	16	27231785	27231785	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:27231785C>T	uc002doh.2	+	7	1247	c.1065C>T	c.(1063-1065)CAC>CAT	p.H355H	JMJD5_uc010vcn.1_Silent_p.H393H|JMJD5_uc010bxw.2_Intron|JMJD5_uc010bxx.2_RNA	NM_024773	NP_079049	Q8N371	KDM8_HUMAN	jumonji domain containing 5 isoform 2	355	JmjC.				G2/M transition of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|histone demethylase activity (H3-K36 specific)|metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(2)|upper_aerodigestive_tract(1)	3						ATGACACGCACCTTCTCCATA	0.592													34	63					0	0	0.004289	0	0
SH2B1	25970	broad.mit.edu	37	16	28880699	28880699	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:28880699C>T	uc002dri.2	+	7	1743	c.1304C>T	c.(1303-1305)TCG>TTG	p.S435L	uc010vct.1_Intron|SH2B1_uc010vdc.1_Missense_Mutation_p.S125L|SH2B1_uc002drj.2_Missense_Mutation_p.S435L|SH2B1_uc002drk.2_Missense_Mutation_p.S435L|SH2B1_uc002drl.2_Missense_Mutation_p.S435L|SH2B1_uc010vdd.1_Missense_Mutation_p.S99L|SH2B1_uc010vde.1_Missense_Mutation_p.S435L|SH2B1_uc002drm.2_Missense_Mutation_p.S435L	NM_001145795	NP_001139267	Q9NRF2	SH2B1_HUMAN	SH2B adaptor protein 1 isoform 1	435	Interaction with JAK2 (low-affinity binding; independent of JAK2 phosphorylation) (By similarity).				blood coagulation|intracellular signal transduction	cytosol|membrane|nucleus	signal transducer activity			ovary(2)	2						GACCGCCTGTCGCAGGGTAAG	0.642													14	14					0	0	0.004990	0	0
QPRT	23475	broad.mit.edu	37	16	29708519	29708519	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:29708519G>A	uc002dto.2	+	4	760	c.682_splice	c.e4-1	p.E228_splice	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|QPRT_uc010vdu.1_Splice_Site	NM_014298	NP_055113	Q15274	NADC_HUMAN	quinolinate phosphoribosyltransferase						protein oligomerization|quinolinate catabolic process|water-soluble vitamin metabolic process	cytosol	nicotinate-nucleotide diphosphorylase (carboxylating) activity|protein homodimerization activity				0					Niacin(DB00627)	GTGTCCCGCAGGAGCTGCACC	0.642													5	7					0	0	0.001168	0	0
TAOK2	9344	broad.mit.edu	37	16	29998361	29998361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:29998361C>T	uc002dva.1	+	16	3551	c.2768C>T	c.(2767-2769)TCC>TTC	p.S923F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|TAOK2_uc002dvb.1_Intron|TAOK2_uc002dvc.1_Intron|TAOK2_uc010bzm.1_Missense_Mutation_p.S930F|TAOK2_uc002dvd.1_Missense_Mutation_p.S750F	NM_016151	NP_057235	Q9UL54	TAOK2_HUMAN	TAO kinase 2 isoform 2	923					actin cytoskeleton organization|activation of MAPKK activity|apoptosis|cell migration|focal adhesion assembly|positive regulation of JNK cascade|protein targeting to membrane|regulation of cell growth|regulation of cell shape|response to stress	cytoplasmic vesicle membrane|cytoskeleton|dendrite|integral to membrane|nucleolus	ATP binding|protein serine/threonine kinase activity			ovary(1)	1						GGTTGTCCTTCCCCCGACATC	0.662													32	57					0	0	0.003755	0	0
FAM57B	83723	broad.mit.edu	37	16	30040777	30040777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:30040777G>A	uc002dvt.2	-	2	523	c.185C>T	c.(184-186)TCC>TTC	p.S62F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|FAM57B_uc002dvu.2_Missense_Mutation_p.S12F	NM_031478	NP_113666	Q71RH2	FA57B_HUMAN	hypothetical protein LOC83723	62	TLC.					endoplasmic reticulum|integral to membrane					0						GTGCTTGCAGGAGGTGGAGAC	0.607													9	11					0	0	0.006214	0	0
MYLPF	29895	broad.mit.edu	37	16	30387967	30387967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:30387967G>A	uc002dxv.1	+	5	360	c.304G>A	c.(304-306)GGA>AGA	p.G102R		NM_013292	NP_037424	Q96A32	MLRS_HUMAN	myosin light chain, phosphorylatable, fast	102	EF-hand 2.				skeletal muscle tissue development	muscle myosin complex	calcium ion binding|structural constituent of muscle				0			Colorectal(24;0.193)			TGTGATCACCGGAGCCTTCAA	0.612													5	11					0	0	0.003080	0	0
SEPHS2	22928	broad.mit.edu	37	16	30455791	30455791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:30455791G>A	uc010ves.1	-	2	1434	c.1258C>T	c.(1258-1260)CCG>TCG	p.P420S	SEPHS2_uc002dyh.1_Missense_Mutation_p.P363S|SEPHS2_uc010vet.1_Missense_Mutation_p.P302S	NM_012248	NP_036380	Q99611	SPS2_HUMAN	selenophosphate synthetase 2	420					selenocysteine biosynthetic process		ATP binding|selenide, water dikinase activity			breast(2)	2						ATAACTCGCGGCTTGTCAATG	0.522													29	28					0	0	0.001512	0	0
SRCAP	10847	broad.mit.edu	37	16	30740727	30740727	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:30740727C>T	uc002dze.1	+	27	6346	c.5961C>T	c.(5959-5961)CCC>CCT	p.P1987P	SRCAP_uc002dzf.2_RNA|SRCAP_uc002dzg.1_Silent_p.P1782P	NM_006662	NP_006653	Q6ZRS2	SRCAP_HUMAN	Snf2-related CBP activator protein	1987					interspecies interaction between organisms|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	Golgi apparatus|nucleus|protein complex	ATP binding|DNA binding|helicase activity|histone acetyltransferase activity|transcription coactivator activity			ovary(3)|skin(1)	4			Colorectal(24;0.198)			AGGCACCTCCCCCTTCCCTGC	0.587													17	17					0	0	0.004007	0	0
SETD1A	9739	broad.mit.edu	37	16	30976009	30976009	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:30976009G>T	uc002ead.1	+	7	1632	c.946G>T	c.(946-948)GCA>TCA	p.A316S		NM_014712	NP_055527	O15047	SET1A_HUMAN	SET domain containing 1A	316	Ser-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nuclear speck|Set1C/COMPASS complex	histone-lysine N-methyltransferase activity|nucleotide binding|protein binding|RNA binding			ovary(2)|skin(1)	3						CCACTTCTCTGCATCTTCAGC	0.478													23	42					5.49717e-05	6.64372e-05	0.003330	1	0
SLC5A2	6524	broad.mit.edu	37	16	31497553	31497553	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:31497553C>T	uc002ecf.3	+	5	550	c.531C>T	c.(529-531)TCC>TCT	p.S177S	SLC5A2_uc010car.2_RNA	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	177	Helical; (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						TCTATGCCTCCGTCATCGCGC	0.602													20	25					0	0	0.002299	0	0
SLC5A2	6524	broad.mit.edu	37	16	31501826	31501826	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:31501826G>A	uc002ecf.3	+	14	2008	c.1989G>A	c.(1987-1989)GTG>GTA	p.V663V	SLC5A2_uc010car.2_RNA|C16orf58_uc002ecg.2_5'Flank|C16orf58_uc002ech.1_3'UTR|C16orf58_uc002eci.1_3'UTR	NM_003041	NP_003032	P31639	SC5A2_HUMAN	solute carrier family 5 (sodium/glucose	663	Helical; (Potential).				carbohydrate metabolic process	integral to membrane	low-affinity glucose:sodium symporter activity			ovary(1)	1						TGATGGCAGTGGCCGTGTTCC	0.637													5	13					0	0	0.000602	0	0
CES1	1066	broad.mit.edu	37	16	55857493	55857493	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:55857493G>A	uc002eim.2	-	4	613	c.505C>T	c.(505-507)CAA>TAA	p.Q169*	CES1_uc002eil.2_Nonsense_Mutation_p.Q170*|CES1_uc002ein.2_Nonsense_Mutation_p.Q169*	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	169					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	AGGCGATATTGAATGGTCACC	0.572													9	60					0	0	0.001368	0	0
HERPUD1	9709	broad.mit.edu	37	16	56976092	56976092	+	Silent	SNP	C	T	T	rs34040285		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:56976092C>T	uc002eke.1	+	7	1363	c.954C>T	c.(952-954)TTC>TTT	p.F318F	HERPUD1_uc002ekf.1_Silent_p.F317F|HERPUD1_uc002ekg.1_Silent_p.F293F|HERPUD1_uc010cco.1_Missense_Mutation_p.S327F|HERPUD1_uc010ccp.1_Silent_p.F220F|HERPUD1_uc002ekh.1_Silent_p.F136F	NM_014685	NP_055500	Q15011	HERP1_HUMAN	homocysteine-inducible, endoplasmic reticulum	318	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	protein binding				0						TTCAGAACTTCCCAAATGATG	0.488			T	ERG	prostate								38	66					0	0	0.002222	0	0
CX3CL1	6376	broad.mit.edu	37	16	57416935	57416935	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:57416935G>A	uc002eli.2	+	3	1252	c.1185G>A	c.(1183-1185)GTG>GTA	p.V395V		NM_002996	NP_002987	P78423	X3CL1_HUMAN	chemokine (C-X3-C motif) ligand 1 precursor	395	Cytoplasmic (Potential).				cell adhesion|cytokine-mediated signaling pathway|defense response|immune response|leukocyte adhesive activation|positive regulation of calcium-independent cell-cell adhesion|positive regulation of inflammatory response	cell surface|extracellular space|integral to membrane|plasma membrane	chemokine activity				0						ATGTCCTGGTGCCCGTGTGAA	0.592													31	76					0	0	0.004878	0	0
CDH16	1014	broad.mit.edu	37	16	66945820	66945820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:66945820G>A	uc002eql.2	-	13	1845	c.1772C>T	c.(1771-1773)CCC>CTC	p.P591L	CDH16_uc010cdy.2_Missense_Mutation_p.P591L|CDH16_uc002eqm.2_Missense_Mutation_p.P494L	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	591	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		TCGGCTGATGGGGTCGGAGGG	0.637													14	27					0	0	0.002450	0	0
SLC9A5	6553	broad.mit.edu	37	16	67298344	67298344	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:67298344G>A	uc002esm.2	+	13	1995	c.1932G>A	c.(1930-1932)CGG>CGA	p.R644R	SLC9A5_uc010cee.2_Silent_p.R349R|SLC9A5_uc010vji.1_Silent_p.R148R	NM_004594	NP_004585	Q14940	SL9A5_HUMAN	solute carrier family 9 (sodium/hydrogen	644					regulation of pH	integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			ovary(1)|pancreas(1)	2		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00376)|Epithelial(162;0.0173)|all cancers(182;0.116)		TGAAGCGGCGGCTGGAGTCCT	0.577													9	17					0	0	0.004482	0	0
CTCF	10664	broad.mit.edu	37	16	67650756	67650756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:67650756C>T	uc002etl.2	+	5	1351	c.1061C>T	c.(1060-1062)TCC>TTC	p.S354F	CTCF_uc010cek.2_Missense_Mutation_p.S26F	NM_006565	NP_006556	P49711	CTCF_HUMAN	CCCTC-binding factor	354	C2H2-type 4.				chromatin modification|chromosome segregation|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|regulation of centromeric sister chromatid cohesion|regulation of molecular function, epigenetic	chromosome, centromeric region|condensed chromosome|nucleolus|nucleoplasm	chromatin insulator sequence binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)	1		Acute lymphoblastic leukemia(13;3.76e-06)|all_hematologic(13;0.000303)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0166)|Epithelial(162;0.0577)		TTCAAGTGTTCCATGTGCGAT	0.453													57	106					0	0	0.003610	0	0
CENPT	80152	broad.mit.edu	37	16	67865213	67865213	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:67865213C>T	uc002eun.3	-	10	1158	c.609G>A	c.(607-609)CAG>CAA	p.Q203Q	CENPT_uc002eum.3_Silent_p.Q203Q|CENPT_uc010vkc.1_5'UTR|CENPT_uc010vkd.1_5'UTR|CENPT_uc010vke.1_Silent_p.Q100Q	NM_025082	NP_079358	Q96BT3	CENPT_HUMAN	centromere protein T	203					mitotic prometaphase	condensed chromosome kinetochore|cytosol|nucleus	DNA binding				0		Acute lymphoblastic leukemia(13;0.000299)|all_hematologic(13;0.0184)|Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00429)|Epithelial(162;0.019)|all cancers(182;0.124)		AGCCAGGCCTCTGCACTGACT	0.597													7	22					0	0	0.004482	0	0
SLC12A4	6560	broad.mit.edu	37	16	67980933	67980933	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:67980933G>A	uc002euz.2	-	17	2289	c.2148C>T	c.(2146-2148)TCC>TCT	p.S716S	LCAT_uc002euy.1_5'Flank|SLC12A4_uc010ceu.2_Silent_p.S710S|SLC12A4_uc010vkh.1_Silent_p.S685S|SLC12A4_uc010vki.1_Silent_p.S716S|SLC12A4_uc010vkj.1_Silent_p.S718S|SLC12A4_uc002eva.2_Silent_p.S716S|SLC12A4_uc010cev.1_RNA|SLC12A4_uc002evb.2_RNA	NM_005072	NP_005063	Q9UP95	S12A4_HUMAN	solute carrier family 12, member 4 isoform a	716					cell volume homeostasis|potassium ion transport|sodium ion transport	integral to plasma membrane|membrane fraction	potassium:chloride symporter activity			ovary(1)	1		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	CCTTGAGCTGGGAGGCGAAGG	0.652													7	13					0	0	0.003080	0	0
ZNF19	7567	broad.mit.edu	37	16	71509998	71509998	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:71509998A>G	uc010cgc.1	-	6	958	c.452T>C	c.(451-453)GTT>GCT	p.V151A	ZNF23_uc002fai.2_Intron|ZNF19_uc002fak.1_Missense_Mutation_p.V139A|ZNF19_uc002fal.1_Missense_Mutation_p.V139A|ZNF19_uc002fam.1_Missense_Mutation_p.V151A	NM_006961	NP_008892	P17023	ZNF19_HUMAN	zinc finger protein 19	151						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(137;0.00965)		BRCA - Breast invasive adenocarcinoma(221;0.0161)|Kidney(780;0.0598)		GATTCTTGGAACCTTTCCTTG	0.458													12	16					0	0	0.001368	0	0
TAT	6898	broad.mit.edu	37	16	71610304	71610304	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:71610304C>T	uc002fap.2	-	2	114	c.15G>A	c.(13-15)ATG>ATA	p.M5I	TAT_uc002faq.2_Missense_Mutation_p.M5I|TAT_uc002far.2_Missense_Mutation_p.M5I	NM_000353	NP_000344	P17735	ATTY_HUMAN	tyrosine aminotransferase	5					2-oxoglutarate metabolic process|glutamate metabolic process|L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	1-aminocyclopropane-1-carboxylate synthase activity|L-tyrosine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(2)	2		Ovarian(137;0.125)		Kidney(780;0.0157)	L-Glutamic Acid(DB00142)|L-Phenylalanine(DB00120)|L-Tyrosine(DB00135)|Pyridoxal Phosphate(DB00114)	TCATCTGAATCATGTATGGGT	0.512													16	41					0	0	0.007413	0	0
PHLPP2	23035	broad.mit.edu	37	16	71683204	71683204	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:71683204C>T	uc002fax.2	-	18	3567	c.3561G>A	c.(3559-3561)GAG>GAA	p.E1187E	PHLPP2_uc002fav.2_Intron|PHLPP2_uc010cgf.2_Silent_p.E1120E	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	1187						cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						TAGGAGAACTCTCTATGAGAG	0.532													20	35					0	0	0.001523	0	0
HPR	3250	broad.mit.edu	37	16	72110725	72110725	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:72110725G>A	uc002fby.2	+	5	822	c.792G>A	c.(790-792)AAG>AAA	p.K264K	TXNL4B_uc010cgl.2_Intron	NM_020995	NP_066275	P00739	HPTR_HUMAN	haptoglobin-related protein precursor	264	Peptidase S1.				proteolysis	spherical high-density lipoprotein particle	hemoglobin binding|serine-type endopeptidase activity			central_nervous_system(1)	1		Ovarian(137;0.125)				CCAAATGGAAGGCACCGAAGA	0.507													10	48					0	0	0.006214	0	0
PMFBP1	83449	broad.mit.edu	37	16	72174409	72174409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:72174409C>T	uc002fcc.3	-	6	881	c.709G>A	c.(709-711)GAG>AAG	p.E237K	PMFBP1_uc002fcd.2_Missense_Mutation_p.E237K|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_Missense_Mutation_p.E92K	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	237										ovary(2)	2		Ovarian(137;0.179)				TTCTGAGTCTCCTGATGCTCT	0.428													50	133					0	0	0.003610	0	0
ADAMTS18	170692	broad.mit.edu	37	16	77401410	77401410	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:77401410A>T	uc002ffc.3	-	4	1125	c.706T>A	c.(706-708)TCT>ACT	p.S236T	ADAMTS18_uc002ffe.1_5'UTR|ADAMTS18_uc010vni.1_RNA	NM_199355	NP_955387	Q8TE60	ATS18_HUMAN	ADAM metallopeptidase with thrombospondin type 1	236					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(4)|lung(4)|kidney(4)|skin(3)|breast(1)|ovary(1)|pancreas(1)	18						CGACTCTGAGATGCATGGGGA	0.483													18	61					0	0	0.001216	0	0
MBTPS1	8720	broad.mit.edu	37	16	84129405	84129405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:84129405G>A	uc002fhi.2	-	4	929	c.427C>T	c.(427-429)CCC>TCC	p.P143S		NM_003791	NP_003782	Q14703	MBTP1_HUMAN	membrane-bound transcription factor site-1	143					cholesterol metabolic process|proteolysis	endoplasmic reticulum lumen|endoplasmic reticulum membrane|Golgi membrane|integral to membrane	serine-type endopeptidase activity			ovary(2)	2						GGTACTGTGGGGTCAGCTACA	0.547													17	52					0	0	0.004990	0	0
KCNG4	93107	broad.mit.edu	37	16	84270723	84270723	+	Silent	SNP	G	A	A	rs144555438		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:84270723G>A	uc010voc.1	-	2	490	c.369C>T	c.(367-369)ATC>ATT	p.I123I	KCNG4_uc002fhu.1_Silent_p.I123I	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	123	Helical; Name=Segment S1; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GGAAGCTCACGATCACCCCGA	0.632													8	28					0	0	0.006214	0	0
ATP2C2	9914	broad.mit.edu	37	16	84456094	84456094	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:84456094C>T	uc002fhx.2	+	8	812	c.723C>T	c.(721-723)ACC>ACT	p.T241T	ATP2C2_uc010chj.2_Silent_p.T241T|ATP2C2_uc002fhy.2_Silent_p.T258T|ATP2C2_uc002fhz.2_Silent_p.T90T	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	241	Helical; Name=3; (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						ACCTCACCACCCTCAGCAACA	0.612													22	46					0	0	0.002780	0	0
JPH3	57338	broad.mit.edu	37	16	87723259	87723259	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:87723259G>A	uc002fkd.2	+	4	1547	c.1293G>A	c.(1291-1293)GAG>GAA	p.E431E	JPH3_uc010vou.1_RNA	NM_020655	NP_065706	Q8WXH2	JPH3_HUMAN	junctophilin 3	431	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional sarcoplasmic reticulum membrane|plasma membrane	protein binding			ovary(1)|pancreas(1)	2				BRCA - Breast invasive adenocarcinoma(80;0.0287)		CAGGGCTGGAGTACCAGAGGC	0.667													5	2					0	0	0.001168	0	0
ZFPM1	161882	broad.mit.edu	37	16	88599317	88599317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:88599317G>A	uc002fkv.2	+	9	1196	c.1163G>A	c.(1162-1164)GGA>GAA	p.G388E		NM_153813	NP_722520	Q8IX07	FOG1_HUMAN	zinc finger protein, multitype 1	388					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|transcription factor binding|zinc ion binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0478)		CCAGGGGCCGGACACCCAGCA	0.647													11	24					0	0	0.001368	0	0
ANKRD11	29123	broad.mit.edu	37	16	89345503	89345503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:89345503G>A	uc002fmx.1	-	9	7908	c.7447C>T	c.(7447-7449)CTC>TTC	p.L2483F	ANKRD11_uc002fmy.1_Missense_Mutation_p.L2483F|ANKRD11_uc002fnc.1_Missense_Mutation_p.L2483F|ANKRD11_uc002fna.1_Missense_Mutation_p.L148F|ANKRD11_uc002fnb.1_Missense_Mutation_p.L2440F	NM_013275	NP_037407	Q6UB99	ANR11_HUMAN	ankyrin repeat domain 11	2483						nucleus				ovary(4)|large_intestine(1)|central_nervous_system(1)	6		all_hematologic(23;0.00824)|Colorectal(91;0.0475)		Epithelial(1;5.33e-11)|all cancers(4;2.6e-09)|OV - Ovarian serous cystadenocarcinoma(4;2.29e-07)|BRCA - Breast invasive adenocarcinoma(80;0.0142)		AGCTTGCTGAGCGGCTTGCCG	0.657													6	11					0	0	0.001168	0	0
FANCA	2175	broad.mit.edu	37	16	89815171	89815171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:89815171G>A	uc002fou.1	-	33	3286	c.3244C>T	c.(3244-3246)CTC>TTC	p.L1082F	FANCA_uc010vpn.1_Missense_Mutation_p.L1082F|FANCA_uc010vpo.1_Missense_Mutation_p.L168F	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	1082			L -> P (in FA).		DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		AGGCGGAGGAGGATCCTGGAA	0.582			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				7	22					0	0	0.004482	0	0
OR1E1	8387	broad.mit.edu	37	17	3300968	3300968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:3300968G>A	uc002fvj.1	-	1	737	c.737C>T	c.(736-738)TCT>TTT	p.S246F		NM_003553	NP_003544	P30953	OR1E1_HUMAN	olfactory receptor, family 1, subfamily E,	246	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGACACCACAGACAGGTGGGA	0.463													18	16					0	0	0.007413	0	0
MINK1	50488	broad.mit.edu	37	17	4789256	4789256	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:4789256C>T	uc010vsl.1	+	8	886	c.690C>T	c.(688-690)GCC>GCT	p.A230A	MINK1_uc010vsk.1_Silent_p.A230A|MINK1_uc010vsm.1_Silent_p.A230A|MINK1_uc010vsn.1_Silent_p.A230A|MINK1_uc010vso.1_Silent_p.A175A|MINK1_uc010vsp.1_5'UTR	NM_153827	NP_722549	Q8N4C8	MINK1_HUMAN	misshapen-like kinase 1 isoform 3	230	Protein kinase.				JNK cascade	cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			central_nervous_system(2)|stomach(1)|large_intestine(1)|lung(1)|skin(1)	6						CAGAGGGAGCCCCCCGTAAGT	0.567													9	7					0	0	0.000673	0	0
SLC25A11	8402	broad.mit.edu	37	17	4842173	4842173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:4842173G>A	uc002fzo.1	-	3	459	c.346C>T	c.(346-348)CCC>TCC	p.P116S	SLC25A11_uc002fzp.1_Missense_Mutation_p.P112S|RNF167_uc002fzq.2_5'Flank|RNF167_uc002fzr.2_5'Flank|RNF167_uc002fzs.2_5'Flank|RNF167_uc002fzt.2_5'Flank|RNF167_uc002fzu.2_5'Flank|RNF167_uc002fzv.2_5'Flank|RNF167_uc002fzw.1_5'Flank|RNF167_uc002fzx.2_5'Flank	NM_003562	NP_003553	Q02978	M2OM_HUMAN	solute carrier family 25 member 11 isoform 1	116					gluconeogenesis	integral to plasma membrane|mitochondrial inner membrane	oxoglutarate:malate antiporter activity				0						AAGCCAGGGGGAGTACCATCA	0.607													14	8					0	0	0.001855	0	0
TP53	7157	broad.mit.edu	37	17	7578257	7578257	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:7578257C>A	uc002gim.2	-	6	786	c.592G>T	c.(592-594)GAA>TAA	p.E198*	TP53_uc002gig.1_Nonsense_Mutation_p.E198*|TP53_uc002gih.2_Nonsense_Mutation_p.E198*|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Nonsense_Mutation_p.E66*|TP53_uc010cng.1_Nonsense_Mutation_p.E66*|TP53_uc002gii.1_Nonsense_Mutation_p.E66*|TP53_uc010cnh.1_Nonsense_Mutation_p.E198*|TP53_uc010cni.1_Nonsense_Mutation_p.E198*|TP53_uc002gij.2_Nonsense_Mutation_p.E198*|TP53_uc010cnj.1_Intron|TP53_uc002gin.2_Nonsense_Mutation_p.E105*|TP53_uc002gio.2_Nonsense_Mutation_p.E66*|TP53_uc010vug.1_Nonsense_Mutation_p.E159*	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	198	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		E -> G (in sporadic cancers; somatic mutation).|E -> D (in a sporadic cancer; somatic mutation).|E -> K (in sporadic cancers; somatic mutation).|E -> V (in a sporadic cancer; somatic mutation).|E -> Q (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.E198*(17)|p.0?(7)|p.E198K(4)|p.E198fs*11(2)|p.E198Q(2)|p.E198_G199ins21(1)|p.E198fs*7(1)|p.E198_L201>V(1)|p.E198fs*49(1)|p.K164_P219del(1)|p.E198G(1)|p.P191fs*6(1)|p.I195_G199delIRVEG(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		AAATTTCCTTCCACTCGGATA	0.547		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			15	8					6.49762e-13	7.91503e-13	0.006122	1	0
MYH10	4628	broad.mit.edu	37	17	8455375	8455375	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:8455375T>A	uc002gll.2	-	8	974	c.878A>T	c.(877-879)GAA>GTA	p.E293V	MYH10_uc002glm.2_Missense_Mutation_p.E303V|MYH10_uc010cnx.2_Missense_Mutation_p.E302V|MYH10_uc010cny.1_RNA	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	293	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						CTTTAGGTGTTCTCCTGCTCC	0.328													18	6					0	0	0.002299	0	0
USP43	124739	broad.mit.edu	37	17	9583588	9583588	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:9583588C>T	uc010cod.2	+	6	1010	c.1010C>T	c.(1009-1011)TCT>TTT	p.S337F	USP43_uc002gma.3_Missense_Mutation_p.S26F|USP43_uc010vva.1_Missense_Mutation_p.S337F|USP43_uc010coe.2_Missense_Mutation_p.S134F	NM_153210	NP_694942	Q70EL4	UBP43_HUMAN	ubiquitin specific protease 43	337					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TTCCAGCGGTCTTTCTTTGAT	0.438													22	16					0	0	0.002780	0	0
MYH8	4626	broad.mit.edu	37	17	10309360	10309360	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:10309360C>T	uc002gmm.2	-	21	2525	c.2430G>A	c.(2428-2430)AGG>AGA	p.R810R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	810	IQ.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						ATTGTTACCTCCTTTGCAACA	0.343									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				21	19					0	0	0.003330	0	0
LLGL1	3996	broad.mit.edu	37	17	18143971	18143971	+	Silent	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:18143971A>G	uc002gsp.2	+	17	2347	c.2286A>G	c.(2284-2286)GCA>GCG	p.A762A		NM_004140	NP_004131	Q15334	L2GL1_HUMAN	lethal giant larvae homolog 1	762	WD 11.				cortical actin cytoskeleton organization|exocytosis|protein complex assembly	cortical actin cytoskeleton	protein kinase binding|structural molecule activity			breast(2)|skin(2)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)	6	all_neural(463;0.228)					TGCCGGCAGCAGCAGTGGGTG	0.662													18	21					0	0	0.004990	0	0
FAM83G	644815	broad.mit.edu	37	17	18907103	18907103	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:18907103C>T	uc002guw.2	-	2	419	c.252G>A	c.(250-252)ACG>ACA	p.T84T	SLC5A10_uc002gur.1_Intron|SLC5A10_uc002guu.1_Intron|SLC5A10_uc002gut.1_Intron|SLC5A10_uc002guv.1_Intron|SLC5A10_uc010vyl.1_Intron	NM_001039999	NP_001035088	A6ND36	FA83G_HUMAN	hypothetical protein LOC644815	84										ovary(1)|central_nervous_system(1)	2						GAGAGGGGCCCGTGCCCCGAG	0.701													6	4					0	0	0.001168	0	0
EPN2	22905	broad.mit.edu	37	17	19237303	19237303	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:19237303C>T	uc002gvd.3	+	11	2110	c.1662C>T	c.(1660-1662)TTC>TTT	p.F554F	EPN2_uc002gve.3_Silent_p.F497F|EPN2_uc002gvf.3_Silent_p.F269F|EPN2_uc010vyo.1_Silent_p.F262F|EPN2_uc010vyp.1_Silent_p.F490F|EPN2_uc010vyq.1_Silent_p.F491F|EPN2_uc002gvh.1_Intron|EPN2_uc002gvj.3_Intron	NM_014964	NP_055779	O95208	EPN2_HUMAN	epsin 2 isoform b	554	2.|6 X 3 AA repeats of [DE]-P-W.|3 X 3 AA repeats of N-P-F.				endocytosis		lipid binding			skin(1)	1	all_cancers(12;3.11e-05)|all_epithelial(12;0.00121)|Hepatocellular(7;0.00345)|Breast(13;0.143)					TTAACCCTTTCCAGGTGAACC	0.607													8	9					0	0	0.003080	0	0
MAPK7	5598	broad.mit.edu	37	17	19285703	19285703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:19285703C>T	uc002gvn.2	+	5	2473	c.2087C>T	c.(2086-2088)GCC>GTC	p.A696V	MAPK7_uc002gvo.2_Missense_Mutation_p.A557V|MAPK7_uc002gvq.2_Missense_Mutation_p.A696V|MAPK7_uc002gvp.2_Missense_Mutation_p.A696V|uc010vyt.1_5'Flank	NM_139033	NP_620602	Q13164	MK07_HUMAN	mitogen-activated protein kinase 7 isoform 1	696	May not be required for kinase activity; required to stimulate MEF2C activity (By similarity).				cell cycle|cell differentiation|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase activity|protein binding			central_nervous_system(4)|lung(3)|stomach(1)|skin(1)	9	all_cancers(12;2.87e-05)|all_epithelial(12;0.00114)|Hepatocellular(7;0.00345)|Breast(13;0.206)					CCCCCAGACGCCGGGGGAGCC	0.637													20	15					0	0	0.002780	0	0
MAP2K3	5606	broad.mit.edu	37	17	21207854	21207854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:21207854C>T	uc002gys.2	+	8	950	c.685C>T	c.(685-687)CCC>TCC	p.P229S	MAP2K3_uc002gyt.2_Missense_Mutation_p.P200S|MAP2K3_uc002gyu.2_Missense_Mutation_p.P200S	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	229	Protein kinase.				activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		CGGCTGCAAGCCCTACATGGC	0.607													4	17					0	0	0.000248	0	0
SUPT6H	6830	broad.mit.edu	37	17	27010010	27010011	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:27010010_27010011CC>TT	uc002hby.2	+	15	1868_1869	c.1778_1779CC>TT	c.(1777-1779)GCC>GTT	p.A593V	SUPT6H_uc010crt.2_Missense_Mutation_p.A593V	NM_003170	NP_003161	Q7KZ85	SPT6H_HUMAN	suppressor of Ty 6 homolog	593					chromatin remodeling|regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter	nucleus	hydrolase activity, acting on ester bonds|RNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Lung NSC(42;0.00431)					TACATGGTAGCCCTGCAGATTG	0.559													7	13					0	0	0.004672	0	0
ERAL1	26284	broad.mit.edu	37	17	27182104	27182104	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:27182104G>A	uc002hcy.1	+	1	62	c.52G>A	c.(52-54)GTC>ATC	p.V18I	ERAL1_uc002hcx.1_Missense_Mutation_p.V18I|ERAL1_uc002hcz.1_RNA|ERAL1_uc002hda.1_5'Flank|ERAL1_uc002hdb.1_5'Flank	NM_005702	NP_005693	O75616	ERAL1_HUMAN	Era-like 1	18				RV -> KI (in Ref. 3; AAG12978).	ribosomal small subunit assembly	mitochondrial inner membrane|mitochondrial matrix	GTP binding|ribosomal small subunit binding|rRNA binding			skin(1)	1	all_cancers(5;2.12e-15)|all_epithelial(6;3.44e-19)|Lung NSC(42;0.01)		Epithelial(11;1.12e-05)|all cancers(11;5.32e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000272)|OV - Ovarian serous cystadenocarcinoma(11;0.105)			GGTGTTAAGAGTCTGGCAGGT	0.637													13	11					0	0	0.001855	0	0
NF1	4763	broad.mit.edu	37	17	29559101	29559101	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:29559101C>T	uc002hgg.2	+	25	3541	c.3208C>T	c.(3208-3210)CAG>TAG	p.Q1070*	NF1_uc002hgh.2_Nonsense_Mutation_p.Q1070*|NF1_uc010csn.1_Nonsense_Mutation_p.Q930*|NF1_uc002hgi.1_Nonsense_Mutation_p.Q103*	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	1070					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		AGATTTGGACCAGGCAAGCAT	0.373			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			7	9					0	0	0.001984	0	0
MED24	9862	broad.mit.edu	37	17	38191469	38191469	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:38191469C>G	uc002htt.2	-	6	773	c.460G>C	c.(460-462)GGG>CGG	p.G154R	MED24_uc010wes.1_5'UTR|MED24_uc010wet.1_RNA|MED24_uc002hts.2_Missense_Mutation_p.G179R|MED24_uc002htu.2_Missense_Mutation_p.G141R|MED24_uc010cwn.2_Missense_Mutation_p.G141R|MED24_uc010weu.1_Missense_Mutation_p.G64R|MED24_uc010wev.1_Missense_Mutation_p.G104R|MED24_uc010wew.1_Missense_Mutation_p.G83R|MED24_uc010wex.1_Intron|MED24_uc010wez.1_5'Flank|MED24_uc010wfa.1_Missense_Mutation_p.G104R|MED24_uc010wfb.1_Missense_Mutation_p.G166R|MED24_uc010wfc.1_Missense_Mutation_p.G91R	NM_014815	NP_055630	O75448	MED24_HUMAN	mediator complex subunit 24 isoform 1	154					androgen receptor signaling pathway|positive regulation of transcription, DNA-dependent|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(1)	1	Colorectal(19;0.000442)					TGCTTCTCCCCAGCGGCTGGA	0.672											OREG0024387	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	63					0	0	0.004672	0	0
KRT16	3868	broad.mit.edu	37	17	39766713	39766713	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:39766713C>A	uc002hxg.3	-	6	1289	c.1150G>T	c.(1150-1152)GAG>TAG	p.E384*	JUP_uc010wfs.1_Intron	NM_005557	NP_005548	P08779	K1C16_HUMAN	keratin 16	384	Rod.|Coil 2.				cell proliferation|epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton			skin(1)	1		Breast(137;0.000307)				GCCAGCTGCTCCTCCACACTG	0.582													41	21					2.46787e-29	3.02802e-29	0.003610	1	0
KCNH4	23415	broad.mit.edu	37	17	40315253	40315253	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:40315253G>A	uc002hzb.2	-	14	2910	c.2577C>T	c.(2575-2577)CCC>CCT	p.P859P		NM_012285	NP_036417	Q9UQ05	KCNH4_HUMAN	potassium voltage-gated channel, subfamily H,	859	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	two-component sensor activity|voltage-gated potassium channel activity			large_intestine(1)	1		all_cancers(22;1.24e-06)|all_epithelial(22;4.33e-05)|Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.126)		TACCTGTAGGGGGCGCCTGGG	0.488													25	17					0	0	0.006320	0	0
NAGLU	4669	broad.mit.edu	37	17	40690485	40690485	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:40690485C>T	uc002hzv.2	+	3	1000	c.660C>T	c.(658-660)ATC>ATT	p.I220I		NM_000263	NP_000254	P54802	ANAG_HUMAN	alpha-N-acetylglucosaminidase precursor	220						lysosome	alpha-N-acetylglucosaminidase activity				0		all_cancers(22;1.58e-05)|Breast(137;0.000153)|all_epithelial(22;0.000344)		BRCA - Breast invasive adenocarcinoma(366;0.13)	N-Acetyl-D-glucosamine(DB00141)	CCTGGCACATCAAGCAGCTTT	0.587													20	52					0	0	0.002780	0	0
HDAC5	10014	broad.mit.edu	37	17	42170121	42170121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:42170121G>A	uc002ifd.1	-	7	906	c.695C>T	c.(694-696)CCT>CTT	p.P232L	HDAC5_uc002ife.1_Missense_Mutation_p.P232L|HDAC5_uc002iff.1_Missense_Mutation_p.P233L|HDAC5_uc010czp.1_Missense_Mutation_p.P232L|HDAC5_uc002ifh.2_Missense_Mutation_p.P232L	NM_005474	NP_005465	Q9UQL6	HDAC5_HUMAN	histone deacetylase 5 isoform 1	232					B cell differentiation|cellular response to insulin stimulus|chromatin remodeling|chromatin silencing|inflammatory response|negative regulation of cell migration involved in sprouting angiogenesis|negative regulation of myotube differentiation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of protein binding|transcription, DNA-dependent	cytoplasm|histone deacetylase complex	histone deacetylase activity (H3-K16 specific)|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein kinase C binding|repressing transcription factor binding			ovary(1)	1		Breast(137;0.00637)|Prostate(33;0.0313)		BRCA - Breast invasive adenocarcinoma(366;0.118)		AGGCGTCCCAGGGGGGCCGCT	0.647													12	26					0	0	0.000978	0	0
NFE2L1	4779	broad.mit.edu	37	17	46128819	46128819	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:46128819C>T	uc002imz.3	+	2	990	c.339C>T	c.(337-339)GTC>GTT	p.V113V	NFE2L1_uc002ina.3_Silent_p.V113V|NFE2L1_uc002inb.3_Silent_p.V113V|NFE2L1_uc002inc.1_Silent_p.V113V	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	113					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						AGGGGTCTGTCTCTGGCAGTC	0.632													18	55					0	0	0.006122	0	0
HOXB2	3212	broad.mit.edu	37	17	46620505	46620505	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:46620505G>A	uc002inm.2	-	2	1116	c.996C>T	c.(994-996)AGC>AGT	p.S332S		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	332					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						AAGGGACCGGGCTGTCGAGAG	0.567													36	83					0	0	0.006230	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47123661	47123661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:47123661G>A	uc002iom.2	+	14	1901	c.1567G>A	c.(1567-1569)GTA>ATA	p.V523I	IGF2BP1_uc010dbj.2_Missense_Mutation_p.V384I	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	523	Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).|KH 4.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						TGAGGTGGTAGTACCAAGAGA	0.547													23	32					0	0	0.003954	0	0
COL1A1	1277	broad.mit.edu	37	17	48266782	48266782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:48266782C>T	uc002iqm.2	-	39	2911	c.2785G>A	c.(2785-2787)GGC>AGC	p.G929S		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	929	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CCAGCAGGGCCAGGGGGACCA	0.647			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						12	60					0	0	0.001855	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48602351	48602351	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:48602351C>T	uc010wmr.1	+	13	2040	c.1878C>T	c.(1876-1878)ACC>ACT	p.T626T	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	589					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CCTATCTCACCGAGGAAGACT	0.627													20	62					0	0	0.001523	0	0
SPATA20	64847	broad.mit.edu	37	17	48631746	48631746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:48631746C>T	uc002irf.2	+	14	2185	c.2044C>T	c.(2044-2046)CGT>TGT	p.R682C	SPATA20_uc002irc.2_Missense_Mutation_p.R349C|SPATA20_uc002ire.2_Missense_Mutation_p.R638C|SPATA20_uc002ird.2_Missense_Mutation_p.R698C|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	682					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			GCGCATGCGTCGTGTCCCGGT	0.657													32	76					0	0	0.005524	0	0
SPATA20	64847	broad.mit.edu	37	17	48631790	48631791	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:48631790_48631791CC>TT	uc002irf.2	+	14	2229_2230	c.2088_2089CC>TT	c.(2086-2091)GCCCAG>GCTTAG	p.Q697*	SPATA20_uc002irc.2_Nonsense_Mutation_p.Q364*|SPATA20_uc002ire.2_Nonsense_Mutation_p.Q653*|SPATA20_uc002ird.2_Nonsense_Mutation_p.Q713*|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	697					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			CCCTCTCAGCCCAGCAGCAGAC	0.649													21	77					0	0	0.004672	0	0
CACNA1G	8913	broad.mit.edu	37	17	48701351	48701351	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:48701351C>T	uc002irk.1	+	36	6516	c.6144C>T	c.(6142-6144)CCC>CCT	p.P2048P	CACNA1G_uc002irj.1_Silent_p.P1921P|CACNA1G_uc002irl.1_Silent_p.P1932P|CACNA1G_uc002irm.1_Silent_p.P1969P|CACNA1G_uc002irn.1_Silent_p.P1914P|CACNA1G_uc002iro.1_Silent_p.P1921P|CACNA1G_uc002irp.1_Silent_p.P2003P|CACNA1G_uc002irq.1_Silent_p.P2025P|CACNA1G_uc002irr.1_Silent_p.P1955P|CACNA1G_uc002irs.1_Silent_p.P1992P|CACNA1G_uc002irt.1_Silent_p.P1937P|CACNA1G_uc002irv.1_Silent_p.P1944P|CACNA1G_uc002irw.1_Silent_p.P1977P|CACNA1G_uc002iru.1_Silent_p.P2014P|CACNA1G_uc002irx.1_Silent_p.P1868P|CACNA1G_uc002iry.1_Silent_p.P1857P|CACNA1G_uc002irz.1_Silent_p.P1861P|CACNA1G_uc002isa.1_Silent_p.P1834P|CACNA1G_uc002isb.1_Silent_p.P1875P|CACNA1G_uc002isc.1_Silent_p.P1950P|CACNA1G_uc002isd.1_Silent_p.P1843P|CACNA1G_uc002ise.1_Silent_p.P1871P|CACNA1G_uc002isf.1_Silent_p.P1898P|CACNA1G_uc002isg.1_Silent_p.P1816P|CACNA1G_uc002ish.1_Silent_p.P1823P|CACNA1G_uc002isi.1_Silent_p.P1811P	NM_018896	NP_061496	O43497	CAC1G_HUMAN	voltage-dependent calcium channel alpha 1G	2048	Cytoplasmic (Potential).				axon guidance	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(1)	1	Breast(11;6.7e-17)		BRCA - Breast invasive adenocarcinoma(22;7.52e-09)		Ethosuximide(DB00593)|Flunarizine(DB04841)|Levetiracetam(DB01202)|Mibefradil(DB01388)|Pimozide(DB01100)|Trimethadione(DB00347)|Verapamil(DB00661)|Zonisamide(DB00909)	ACTCTCTGCCCAATGACAGCT	0.632													44	24					0	0	0.002522	0	0
WFIKKN2	124857	broad.mit.edu	37	17	48917245	48917245	+	Missense_Mutation	SNP	C	T	T	rs142981915	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:48917245C>T	uc002isv.3	+	2	1290	c.596C>T	c.(595-597)TCC>TTC	p.S199F	WFIKKN2_uc010dbu.2_Missense_Mutation_p.S106F	NM_175575	NP_783165	Q8TEU8	WFKN2_HUMAN	WFIKKN2 protein	199						extracellular region	metalloendopeptidase inhibitor activity|protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(22;1.09e-08)			ACCACAGCCTCCCCAGAGACC	0.617													16	15					0	0	0.006122	0	0
KIF2B	84643	broad.mit.edu	37	17	51901259	51901259	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:51901259G>A	uc002iua.2	+	1	1021	c.865G>A	c.(865-867)GAG>AAG	p.E289K	uc010wna.1_RNA	NM_032559	NP_115948	Q8N4N8	KIF2B_HUMAN	kinesin family member 2B	289	Kinesin-motor.				blood coagulation|cell division|microtubule depolymerization|microtubule-based movement|mitotic prometaphase|regulation of chromosome segregation	condensed chromosome kinetochore|cytosol|microtubule|microtubule organizing center|nucleolus|spindle	ATP binding|microtubule motor activity			ovary(5)|skin(3)	8						GCCACTGGTGGAGTCCATCTT	0.577													26	22					0	0	0.004656	0	0
ANKFN1	162282	broad.mit.edu	37	17	54428197	54428197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:54428197C>T	uc002iun.1	+	4	303	c.268C>T	c.(268-270)CCC>TCC	p.P90S		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	90										large_intestine(1)|ovary(1)	2						ACATAGTGCTCCCTCATCTCC	0.433													17	41					0	0	0.004007	0	0
EPX	8288	broad.mit.edu	37	17	56271413	56271413	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:56271413G>A	uc002ivq.2	+	5	640	c.554G>A	c.(553-555)TGG>TAG	p.W185*		NM_000502	NP_000493	P11678	PERE_HUMAN	eosinophil peroxidase preproprotein	185					hydrogen peroxide catabolic process		heme binding|peroxidase activity|protein binding			ovary(2)	2						CCCTTCGGCTGGACCCCCAGC	0.572													14	23					0	0	0.002450	0	0
TEX14	56155	broad.mit.edu	37	17	56693650	56693650	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:56693650G>C	uc010dcz.1	-	7	789	c.671C>G	c.(670-672)GCG>GGG	p.A224G	TEX14_uc002iwr.1_Missense_Mutation_p.A218G|TEX14_uc002iws.1_Missense_Mutation_p.A218G|TEX14_uc010dda.1_5'UTR	NM_198393	NP_938207	Q8IWB6	TEX14_HUMAN	testis expressed sequence 14 isoform a	224						cytoplasm	ATP binding|protein kinase activity			stomach(4)|lung(3)|breast(3)|ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)|pancreas(1)	17	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CATCTGTGTCGCCCCAGTAAG	0.463													17	69					0	0	0.007413	0	0
MARCH10	162333	broad.mit.edu	37	17	60779114	60779114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:60779114C>T	uc010ddr.2	-	11	2615	c.2377G>A	c.(2377-2379)GAG>AAG	p.E793K	MARCH10_uc002jag.3_Missense_Mutation_p.E793K|MARCH10_uc010dds.2_Missense_Mutation_p.E831K	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	793							ligase activity|zinc ion binding				0						TCTCCCAACTCCGAATCTGGA	0.587													26	70					0	0	0.001786	0	0
ACE	1636	broad.mit.edu	37	17	61571793	61571793	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:61571793G>A	uc002jau.1	+	22	3364	c.3342G>A	c.(3340-3342)GGG>GGA	p.G1114G	ACE_uc002jav.1_Silent_p.G540G|ACE_uc010ddv.1_Silent_p.G341G|ACE_uc010wpj.1_Silent_p.G540G|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Silent_p.G360G	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1114	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	TTGACCCAGGGGCCAAGTTCC	0.542													11	48					0	0	0.001368	0	0
KCNH6	81033	broad.mit.edu	37	17	61600840	61600840	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:61600840C>T	uc002jay.2	+	1	146	c.66C>T	c.(64-66)TTC>TTT	p.F22F	KCNH6_uc002jax.1_Silent_p.F22F|KCNH6_uc010wpl.1_5'UTR|KCNH6_uc010wpm.1_Silent_p.F22F|KCNH6_uc002jaz.1_Silent_p.F22F	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	22	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	TCCGCAAGTTCGAGGGCCAAA	0.632													8	26					0	0	0.004482	0	0
SCN4A	6329	broad.mit.edu	37	17	62026854	62026854	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:62026854G>A	uc002jds.1	-	15	2965	c.2888C>T	c.(2887-2889)TCC>TTC	p.S963F		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	963					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	GCTGCAGACGGACGAGTTCCC	0.627													9	26					0	0	0.004482	0	0
SCN4A	6329	broad.mit.edu	37	17	62050004	62050004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:62050004C>T	uc002jds.1	-	1	275	c.198G>A	c.(196-198)ATG>ATA	p.M66I		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	66					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CTCCGTAGATCATGGGTAGGT	0.597													9	6					0	0	0.004482	0	0
SCN4A	6329	broad.mit.edu	37	17	62050038	62050038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:62050038C>T	uc002jds.1	-	1	241	c.164G>A	c.(163-165)CGA>CAA	p.R55Q		NM_000334	NP_000325	P35499	SCN4A_HUMAN	voltage-gated sodium channel type 4 alpha	55					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(1)|pancreas(1)|skin(1)	3					Lamotrigine(DB00555)	CAAGTCACTTCGTGGCTTCCG	0.627													11	10					0	0	0.001368	0	0
BPTF	2186	broad.mit.edu	37	17	65972017	65972017	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:65972017G>T	uc002jgf.2	+	27	8730	c.8669G>T	c.(8668-8670)TGT>TTT	p.C2890F	BPTF_uc002jge.2_Missense_Mutation_p.C2873F|BPTF_uc002jgg.2_Missense_Mutation_p.C605F|BPTF_uc002jgh.2_Missense_Mutation_p.C407F	NM_182641	NP_872579	Q12830	BPTF_HUMAN	bromodomain PHD finger transcription factor	3016					brain development|chromatin remodeling|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NURF complex	sequence-specific DNA binding|transcription factor binding|zinc ion binding			ovary(2)|skin(2)	4	all_cancers(12;6e-11)		BRCA - Breast invasive adenocarcinoma(8;7.48e-08)|Colorectal(3;0.0984)|LUSC - Lung squamous cell carcinoma(166;0.24)			TTTTACCAGTGTGCAGAAGTT	0.383													37	36					4.67007e-22	5.72591e-22	0.001951	1	0
ABCA8	10351	broad.mit.edu	37	17	66871529	66871529	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:66871529G>A	uc002jhp.2	-	35	4562	c.4383C>T	c.(4381-4383)TCC>TCT	p.S1461S	ABCA8_uc002jhq.2_Silent_p.S1501S|ABCA8_uc010wqq.1_Silent_p.S1496S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1461	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					GGTGTTGGATGGAACCGATAC	0.443													11	36					0	0	0.000978	0	0
ABCA8	10351	broad.mit.edu	37	17	66925719	66925719	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:66925719G>A	uc002jhp.2	-	7	1101	c.922C>T	c.(922-924)CTG>TTG	p.L308L	ABCA8_uc002jhq.2_Silent_p.L308L|ABCA8_uc010wqq.1_Silent_p.L308L|ABCA8_uc010wqr.1_Silent_p.L247L|ABCA8_uc002jhr.2_Silent_p.L308L	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	308	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AATCCATACAGGAGAAAGAGG	0.378													21	63					0	0	0.002299	0	0
ABCA10	10349	broad.mit.edu	37	17	67212047	67212047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:67212047C>T	uc010dfa.1	-	9	1646	c.767G>A	c.(766-768)GGA>GAA	p.G256E	ABCA10_uc010wqt.1_RNA|ABCA10_uc010dfb.1_5'Flank|ABCA10_uc010dfc.1_Missense_Mutation_p.G148E	NM_080282	NP_525021	Q8WWZ4	ABCAA_HUMAN	ATP-binding cassette, sub-family A, member 10	256	Helical; (Potential).				transport	integral to membrane	ATP binding|ATPase activity			ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(10;6.95e-12)					CACAGTGAATCCCAGACATCC	0.423													20	57					0	0	0.001523	0	0
SDK2	54549	broad.mit.edu	37	17	71431638	71431638	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:71431638G>A	uc010dfm.2	-	9	1146	c.1146C>T	c.(1144-1146)GCC>GCT	p.A382A	SDK2_uc010dfn.2_Silent_p.A61A	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	382	Extracellular (Potential).|Ig-like C2-type 4.				cell adhesion	integral to membrane				ovary(2)	2						CTGCATTGCGGGCGAAGCACT	0.642													4	7					0	0	0.001168	0	0
ICT1	3396	broad.mit.edu	37	17	73015830	73015831	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:73015830_73015831CC>TT	uc002jmm.2	+	3	261_262	c.259_260CC>TT	c.(259-261)CCT>TTT	p.P87F		NM_001545	NP_001536	Q14197	ICT1_HUMAN	immature colon carcinoma transcript 1 precursor	87					mitochondrial translational termination	mitochondrial large ribosomal subunit	aminoacyl-tRNA hydrolase activity|translation release factor activity, codon nonspecific			ovary(1)|central_nervous_system(1)	2	all_lung(278;0.226)					GAGTAGTGGTCCTGGGGGGCAG	0.436													18	15					0	0	0.004672	0	0
UNC13D	201294	broad.mit.edu	37	17	73839597	73839598	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:73839597_73839598GG>AA	uc002jpp.2	-	2	500_501	c.120_121CC>TT	c.(118-123)ATCCAG>ATTTAG	p.Q41*	UNC13D_uc010wsk.1_Nonsense_Mutation_p.Q41*|UNC13D_uc002jpq.1_5'UTR|UNC13D_uc010dgq.1_5'Flank	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	41					positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			GATGGAGGCTGGATCTGCAGAG	0.639									Familial_Hemophagocytic_Lymphohistiocytosis				10	15					0	0	0.004672	0	0
SLC26A11	284129	broad.mit.edu	37	17	78195515	78195515	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:78195515C>T	uc002jyb.1	+	3	425	c.156C>T	c.(154-156)TTC>TTT	p.F52F	SGSH_uc002jxz.3_5'Flank|SGSH_uc002jya.3_5'Flank|SGSH_uc002jxy.2_5'Flank|SGSH_uc010wue.1_5'Flank|SLC26A11_uc002jyc.1_Silent_p.F52F|SLC26A11_uc002jyd.1_Silent_p.F52F|SLC26A11_uc010dhv.1_Silent_p.F52F	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	52	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			AGATGGATTTCGTCGCCGGCC	0.682													20	23					0	0	0.001882	0	0
RNF213	57674	broad.mit.edu	37	17	78321753	78321753	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:78321753C>T	uc002jyh.1	+	4	4060	c.3837C>T	c.(3835-3837)TTC>TTT	p.F1279F		NM_020914	NP_065965	Q9HCF4	ALO17_HUMAN	ring finger protein 213	Error:Variant_position_missing_in_Q9HCF4_after_alignment										ovary(8)|lung(6)|breast(3)|large_intestine(2)|central_nervous_system(1)|pancreas(1)	21	all_neural(118;0.0538)		BRCA - Breast invasive adenocarcinoma(99;0.0252)|OV - Ovarian serous cystadenocarcinoma(97;0.057)			CACATCATTTCCAGAAGAGGC	0.547													12	17					0	0	0.000978	0	0
RPTOR	57521	broad.mit.edu	37	17	78919516	78919516	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:78919516C>T	uc002jyt.1	+	26	3880	c.3075C>T	c.(3073-3075)GTC>GTT	p.V1025V	RPTOR_uc010wug.1_Silent_p.V867V	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	1025	WD 1.				cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						ACCCCGGCGTCCCCTCTGTGG	0.562													45	13					0	0	0.003610	0	0
ZNF750	79755	broad.mit.edu	37	17	80788671	80788671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr17:80788671C>T	uc002kga.2	-	3	1830	c.1519G>A	c.(1519-1521)GAC>AAC	p.D507N	TBCD_uc002kfx.1_Intron|TBCD_uc002kfy.1_Intron|TBCD_uc002kfz.2_Intron	NM_024702	NP_078978	Q32MQ0	ZN750_HUMAN	zinc finger protein 750	507						intracellular	zinc ion binding			central_nervous_system(1)	1	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0514)|all_epithelial(8;0.0748)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.149)			CCGGAGCTGTCGTCCGGACTG	0.612													14	26					0	0	0.004007	0	0
MYOM1	8736	broad.mit.edu	37	18	3102527	3102527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:3102527C>T	uc002klp.2	-	23	3854	c.3520G>A	c.(3520-3522)GAT>AAT	p.D1174N	MYOM1_uc002klq.2_Missense_Mutation_p.D1078N	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	1174	Ig-like C2-type 3.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						GATACATAATCTTTGGACCAG	0.418													51	94					0	0	0.003610	0	0
DLGAP1	9229	broad.mit.edu	37	18	3729134	3729134	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:3729134C>T	uc002kmf.2	-	4	1658	c.1591_splice	c.e4+1	p.V531_splice	DLGAP1_uc010wyz.1_Splice_Site_p.V531_splice|DLGAP1_uc002kme.1_Splice_Site_p.V229_splice|DLGAP1_uc010dkn.2_Splice_Site_p.G229_splice|DLGAP1_uc010wyw.1_Splice_Site_p.V237_splice|DLGAP1_uc010wyx.1_Splice_Site_p.G243_splice|DLGAP1_uc010wyy.1_Splice_Site_p.A243_splice|DLGAP1_uc002kmg.2_Splice_Site_p.V229_splice|DLGAP1_uc002kmk.2_Splice_Site_p.G531_splice	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform						synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CGCGCACTCACCCGTGCTGCT	0.637													8	11					0	0	0.006214	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879294	3879294	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:3879294A>C	uc002kmf.2	-	1	842	c.775T>G	c.(775-777)TGC>GGC	p.C259G	DLGAP1_uc010wyz.1_Missense_Mutation_p.C259G|DLGAP1_uc002kmk.2_Missense_Mutation_p.C259G|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	259					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				CAGGTGGAGCACTTGACGTCG	0.662													13	35					0	0	0.002450	0	0
LRRC30	339291	broad.mit.edu	37	18	7231230	7231230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:7231230G>A	uc010wzk.1	+	1	94	c.94G>A	c.(94-96)GAT>AAT	p.D32N		NM_001105581	NP_001099051	A6NM36	LRC30_HUMAN	leucine rich repeat containing 30	32										ovary(1)|liver(1)	2						TCCGTGGGACGATGCCCTGCT	0.617													20	32					0	0	0.001523	0	0
DSC2	1824	broad.mit.edu	37	18	28659828	28659828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:28659828G>A	uc002kwl.3	-	11	2102	c.1648C>T	c.(1648-1650)CTT>TTT	p.L550F	DSC2_uc002kwk.3_Missense_Mutation_p.L550F	NM_024422	NP_077740	Q02487	DSC2_HUMAN	desmocollin 2 isoform Dsc2a preproprotein	550	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(10;0.0241)			TCTGATGCAAGGACTGTAATA	0.378													21	57					0	0	0.002299	0	0
DSG2	1829	broad.mit.edu	37	18	29101149	29101149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:29101149G>A	uc002kwu.3	+	5	654	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_001943	NP_001934	Q14126	DSG2_HUMAN	desmoglein 2 preproprotein	156	Extracellular (Potential).|Cadherin 1.				cellular component disassembly involved in apoptosis|homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(2)|breast(1)|skin(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.0068)			CAATGACAACGAACCAGTGTT	0.373													27	26					0	0	0.001786	0	0
NOL4	8715	broad.mit.edu	37	18	31673492	31673492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:31673492C>T	uc010dmi.2	-	5	938	c.709G>A	c.(709-711)GAT>AAT	p.D237N	NOL4_uc002kxr.3_Missense_Mutation_p.D73N|NOL4_uc010xbt.1_Missense_Mutation_p.D163N|NOL4_uc010dmh.2_Missense_Mutation_p.D163N|NOL4_uc010xbu.1_Missense_Mutation_p.D237N|NOL4_uc002kxt.3_Missense_Mutation_p.D237N|NOL4_uc010xbw.1_Missense_Mutation_p.D123N	NM_003787	NP_003778	O94818	NOL4_HUMAN	nucleolar protein 4	237						nucleolus	RNA binding			ovary(3)	3						GAGCTAAGATCAGAGTTCACA	0.363													18	10					0	0	0.004990	0	0
MYO5B	4645	broad.mit.edu	37	18	47527636	47527636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:47527636G>A	uc002leb.2	-	5	889	c.601C>T	c.(601-603)CCC>TCC	p.P201S	MYO5B_uc002lec.1_Missense_Mutation_p.P200S	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	201	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		TCCATGATGGGACTGGATGCC	0.592													17	24					0	0	0.004990	0	0
NEDD4L	23327	broad.mit.edu	37	18	56063468	56063468	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:56063468G>A	uc002lgy.2	+	31	3169	c.2895G>A	c.(2893-2895)GTG>GTA	p.V965V	NEDD4L_uc002lgz.2_Silent_p.V901V|NEDD4L_uc002lgx.2_Silent_p.V945V|NEDD4L_uc010xee.1_Silent_p.V844V|NEDD4L_uc002lhc.2_Silent_p.V957V|NEDD4L_uc002lhd.2_Silent_p.V844V|NEDD4L_uc002lhb.2_Silent_p.V824V|NEDD4L_uc002lhe.2_Silent_p.V937V|NEDD4L_uc002lhf.2_Silent_p.V824V|NEDD4L_uc002lhg.2_Silent_p.V844V|NEDD4L_uc002lhh.2_Silent_p.V740V|NEDD4L_uc010dpn.2_Silent_p.V168V	NM_001144967	NP_001138439	Q96PU5	NED4L_HUMAN	neural precursor cell expressed, developmentally	965	HECT.				cellular sodium ion homeostasis|excretion|interspecies interaction between organisms|positive regulation of endocytosis|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of protein catabolic process|response to metal ion|sodium ion transport|water homeostasis	cytoplasm	protein binding|sodium channel regulator activity|ubiquitin-protein ligase activity			lung(4)	4						TCATGGCCGTGGAAAATGCTC	0.438													7	7					0	0	0.001984	0	0
ALPK2	115701	broad.mit.edu	37	18	56184389	56184389	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:56184389T>C	uc002lhj.3	-	9	5905	c.5691A>G	c.(5689-5691)CAA>CAG	p.Q1897Q		NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	1897							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						TGAAGATGAGTTGGCTGAATT	0.532													8	5					0	0	0.000673	0	0
CDH20	28316	broad.mit.edu	37	18	59166487	59166487	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:59166487C>T	uc010dps.1	+	2	327	c.315C>T	c.(313-315)ATC>ATT	p.I105I	CDH20_uc002lif.2_Silent_p.I99I	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	105	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				GTGCTGGCATCGTGTTTACCA	0.517													8	8					0	0	0.000673	0	0
ZNF407	55628	broad.mit.edu	37	18	72346877	72346877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:72346877C>T	uc002llw.2	+	1	3959	c.3902C>T	c.(3901-3903)CCC>CTC	p.P1301L	ZNF407_uc010xfc.1_Missense_Mutation_p.P1301L|ZNF407_uc010dqu.1_Missense_Mutation_p.P1301L|ZNF407_uc002llu.2_Missense_Mutation_p.P1300L	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1301					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		CAAGAAGATCCCGTTCTGGGG	0.448													3	9					0	0	0.004672	0	0
ZADH2	284273	broad.mit.edu	37	18	72914262	72914262	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr18:72914262A>T	uc002llx.2	-	2	511	c.243T>A	c.(241-243)TAT>TAA	p.Y81*	ZADH2_uc010dqv.2_5'UTR	NM_175907	NP_787103	Q8N4Q0	ZADH2_HUMAN	zinc binding alcohol dehydrogenase domain	81						peroxisome	oxidoreductase activity|zinc ion binding				0		Esophageal squamous(42;0.131)|Prostate(75;0.155)		READ - Rectum adenocarcinoma(2;0.0276)|BRCA - Breast invasive adenocarcinoma(31;0.216)		GGCCTGCTGAATAGTTGATGT	0.443													14	13					0	0	0.001855	0	0
SHC2	25759	broad.mit.edu	37	19	422286	422286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:422286G>A	uc002loq.3	-	11	1480	c.1480C>T	c.(1480-1482)CGC>TGC	p.R494C	SHC2_uc002lop.3_Missense_Mutation_p.R235C	NM_012435	NP_036567	P98077	SHC2_HUMAN	SHC (Src homology 2 domain containing)	494	SH2.				insulin receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction	cytosol					0		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCGCCCGGCGGCTCATCCGG	0.701													4	4					0	0	0.001168	0	0
SBNO2	22904	broad.mit.edu	37	19	1127741	1127741	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:1127741G>A	uc002lrk.3	-	5	541	c.303C>T	c.(301-303)TTC>TTT	p.F101F	SBNO2_uc002lrj.3_Silent_p.F44F|SBNO2_uc010dse.2_Silent_p.F94F|SBNO2_uc010xgj.1_Silent_p.F44F|SBNO2_uc010dsf.2_Silent_p.F44F	NM_014963	NP_055778	Q9Y2G9	SBNO2_HUMAN	strawberry notch homolog 2 isoform 1	101					macrophage activation involved in immune response|negative regulation of transcription, DNA-dependent|regulation of inflammatory response|transcription, DNA-dependent						0		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGATGTTGGAGAAGTCCTCAA	0.617													13	6					0	0	0.002450	0	0
STK11	6794	broad.mit.edu	37	19	1220485	1220485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:1220485C>T	uc002lrl.1	+	4	1693	c.578C>T	c.(577-579)TCC>TTC	p.S193F		NM_000455	NP_000446	Q15831	STK11_HUMAN	serine/threonine protein kinase 11	193	Protein kinase.				anoikis|cell cycle arrest|energy reserve metabolic process|insulin receptor signaling pathway|positive regulation of transforming growth factor beta receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleus	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.0?(19)|p.Y156fs*87(4)|p.?(3)		lung(174)|cervix(35)|skin(15)|large_intestine(12)|pancreas(6)|gastrointestinal_tract_(site_indeterminate)(5)|stomach(4)|ovary(4)|breast(2)|upper_aerodigestive_tract(1)|testis(1)|liver(1)|biliary_tract(1)|small_intestine(1)|urinary_tract(1)|oesophagus(1)|prostate(1)|kidney(1)	266		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;7.93e-06)|all_lung(49;1.25e-05)|Breast(49;0.000172)|Renal(1328;0.0183)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.00942)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCAAAATCTCCGACCTGGGC	0.677		14	D|Mis|N|F|S		NSCLC|pancreatic	jejunal harmartoma|ovarian|testicular|pancreatic			Peutz-Jeghers_syndrome	TSP Lung(3;<1E-08)			6	4					0	0	0.001984	0	0
APC2	10297	broad.mit.edu	37	19	1465626	1465626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:1465626G>A	uc002lsr.1	+	15	2534	c.2326G>A	c.(2326-2328)GGC>AGC	p.G776S	APC2_uc002lss.1_Missense_Mutation_p.G358S|APC2_uc002lst.1_Missense_Mutation_p.G776S|APC2_uc002lsu.1_Missense_Mutation_p.G775S|C19orf25_uc010xgn.1_Intron	NM_005883	NP_005874	O95996	APC2_HUMAN	adenomatosis polyposis coli 2	776					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of catenin import into nucleus|Wnt receptor signaling pathway	actin filament|catenin complex|cytoplasmic microtubule|Golgi membrane|lamellipodium membrane|perinuclear region of cytoplasm	beta-catenin binding|microtubule binding			breast(3)|pancreas(1)	4		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTCCGATTCGGGCTGCTTTGA	0.716													4	6					0	0	0.001984	0	0
TICAM1	148022	broad.mit.edu	37	19	4817290	4817290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:4817290G>A	uc002mbi.2	-	2	1351	c.1100C>T	c.(1099-1101)CCT>CTT	p.P367L		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	367	Pro-rich.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		AGTAGATGAaggaggaggagg	0.443													16	14					0	0	0.003163	0	0
TNFSF14	8740	broad.mit.edu	37	19	6665026	6665026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:6665026C>T	uc002mfk.1	-	5	1016	c.634G>A	c.(634-636)GGG>AGG	p.G212R	TNFSF14_uc002mfj.1_Missense_Mutation_p.G176R	NM_003807	NP_003798	O43557	TNF14_HUMAN	tumor necrosis factor ligand superfamily, member	212	Extracellular (Potential).				cellular response to mechanical stimulus|immune response|induction of apoptosis|release of cytoplasmic sequestered NF-kappaB|T cell homeostasis|T cell proliferation	cytoplasm|extracellular space|integral to membrane|plasma membrane	caspase inhibitor activity|cytokine activity|tumor necrosis factor receptor binding			skin(1)	1						ACCTTCTCCCCAGCCTCCAGG	0.632													9	12					0	0	0.004482	0	0
EMR1	2015	broad.mit.edu	37	19	6926573	6926573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:6926573C>T	uc002mfw.2	+	16	2221	c.2183C>T	c.(2182-2184)TCT>TTT	p.S728F	EMR1_uc010dvc.2_Missense_Mutation_p.S663F|EMR1_uc010dvb.2_Missense_Mutation_p.S676F|EMR1_uc010xji.1_Missense_Mutation_p.S587F|EMR1_uc010xjj.1_Missense_Mutation_p.S551F	NM_001974	NP_001965	Q14246	EMR1_HUMAN	egf-like module containing, mucin-like, hormone	728	Helical; Name=4; (Potential).				cell adhesion|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(3)|lung(1)|skin(1)	5	all_hematologic(4;0.166)					GTGGTGATCTCTGCCAGTGTG	0.512													27	20					0	0	0.001512	0	0
EVI5L	115704	broad.mit.edu	37	19	7911451	7911451	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:7911451C>T	uc002min.2	+	2	177	c.23C>T	c.(22-24)CCC>CTC	p.P8L	EVI5L_uc010xjz.1_Missense_Mutation_p.P8L	NM_145245	NP_660288	Q96CN4	EVI5L_HUMAN	ecotropic viral integration site 5-like isoform	8						intracellular	protein binding|Rab GTPase activator activity			ovary(1)	1						ACTCTGAGCCCCGACTCCTCA	0.657													6	8					0	0	0.001984	0	0
FBN3	84467	broad.mit.edu	37	19	8175966	8175966	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:8175966T>G	uc002mjf.2	-	32	4207	c.4186A>C	c.(4186-4188)ACC>CCC	p.T1396P		NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	1396	EGF-like 21; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						TGGTCCTCGGTGGGGTCAAAG	0.657													5	7					0	0	0.000602	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8654159	8654159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:8654159C>T	uc002mkj.1	-	18	2399	c.2125G>A	c.(2125-2127)GAG>AAG	p.E709K	ADAMTS10_uc002mki.1_Missense_Mutation_p.E196K|ADAMTS10_uc002mkk.1_Missense_Mutation_p.E341K	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	709	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						AAGACGCCCTCGATGGTCTCG	0.672													13	15					0	0	0.002450	0	0
ADAMTS10	81794	broad.mit.edu	37	19	8665924	8665924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:8665924C>T	uc002mkj.1	-	6	972	c.698G>A	c.(697-699)CGA>CAA	p.R233Q	ADAMTS10_uc002mkk.1_5'UTR	NM_030957	NP_112219	Q9H324	ATS10_HUMAN	ADAM metallopeptidase with thrombospondin type 1	233					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			pancreas(2)|skin(2)	4						GCTGACCGATCGCTTCAGGCC	0.647													21	37					0	0	0.001882	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953375	8953375	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:8953375G>A	uc002mko.2	+	1	107	c.21G>A	c.(19-21)AGG>AGA	p.R7R		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	7	Transcription repressor.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GTTCACAGAGGAAGCAACGTG	0.423													6	16					0	0	0.004482	0	0
MUC16	94025	broad.mit.edu	37	19	9048354	9048354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:9048354C>T	uc002mkp.2	-	5	33481	c.33277G>A	c.(33277-33279)GGG>AGG	p.G11093R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11095	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTGATACCCCAGGTGAAACA	0.502													14	24					0	0	0.001855	0	0
MUC16	94025	broad.mit.edu	37	19	9061528	9061528	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:9061528G>A	uc002mkp.2	-	3	26122	c.25918C>T	c.(25918-25920)CAT>TAT	p.H8640Y		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8642	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGAGGGATGAATTTTCTCT	0.433													29	31					0	0	0.001512	0	0
MUC16	94025	broad.mit.edu	37	19	9070177	9070177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:9070177C>T	uc002mkp.2	-	3	17473	c.17269G>A	c.(17269-17271)GAT>AAT	p.D5757N		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5759	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ACACTTGTATCCCCCATGGCG	0.468													27	54					0	0	0.001951	0	0
MUC16	94025	broad.mit.edu	37	19	9086891	9086891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:9086891C>T	uc002mkp.2	-	1	5128	c.4924G>A	c.(4924-4926)GGA>AGA	p.G1642R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1642	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGGTGACTCCACTACTACTG	0.507													27	68					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9090179	9090179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:9090179C>T	uc002mkp.2	-	1	1840	c.1636G>A	c.(1636-1638)GAG>AAG	p.E546K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	546	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GGGGGTCTCTCTGTTTTCATG	0.527													13	22					0	0	0.001855	0	0
COL5A3	50509	broad.mit.edu	37	19	10084245	10084245	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:10084245C>T	uc002mmq.1	-	50	3752	c.3666_splice	c.e50+1	p.P1222_splice		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein						collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CAGTCACTCACCGGGATGCCT	0.622													17	24					0	0	0.001216	0	0
RDH8	50700	broad.mit.edu	37	19	10129494	10129494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:10129494G>A	uc002mmr.2	+	3	599	c.350G>A	c.(349-351)GGA>GAA	p.G117E		NM_015725	NP_056540	Q9NYR8	RDH8_HUMAN	retinol dehydrogenase 8 (all-trans)	117					estrogen biosynthetic process|response to stimulus|visual perception	cytoplasm|integral to plasma membrane	binding|estradiol 17-beta-dehydrogenase activity|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity			ovary(3)|pancreas(1)	4			Epithelial(33;4.24e-05)		Vitamin A(DB00162)	AACTTTTTCGGAGCTGTCCGT	0.577													25	58					0	0	0.003330	0	0
ZNF844	284391	broad.mit.edu	37	19	12187067	12187067	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:12187067C>T	uc002mtb.2	+	4	1275	c.1132C>T	c.(1132-1134)CGT>TGT	p.R378C	ZNF844_uc010dym.1_Missense_Mutation_p.R221C	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	378					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TCTCCCAGTTCGTTTTGAAGA	0.373													3	4					0	0	0.004672	0	0
ZNF490	57474	broad.mit.edu	37	19	12691411	12691411	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:12691411T>C	uc002mtz.2	-	5	1607	c.1478A>G	c.(1477-1479)AAA>AGA	p.K493R		NM_020714	NP_065765	Q9ULM2	ZN490_HUMAN	zinc finger protein 490	493	C2H2-type 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						ATGAATTCTTTTGTGTACTTT	0.423													23	49					0	0	0.001882	0	0
MAST1	22983	broad.mit.edu	37	19	12958462	12958462	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:12958462C>T	uc002mvm.2	+	6	653	c.525C>T	c.(523-525)ATC>ATT	p.I175I	MAST1_uc002mvk.2_Silent_p.I171I|MAST1_uc002mvl.2_Missense_Mutation_p.S149L	NM_014975	NP_055790	Q9Y2H9	MAST1_HUMAN	microtubule associated serine/threonine kinase	175					cytoskeleton organization|intracellular protein kinase cascade	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|large_intestine(1)|skin(1)	7						ACAACGAGATCGTGATGATGA	0.652											OREG0025277	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	34					0	0	0.002299	0	0
C19orf53	28974	broad.mit.edu	37	19	13888974	13888974	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:13888974G>A	uc002mxg.2	+	3	297	c.262G>A	c.(262-264)GGG>AGG	p.G88R		NM_014047	NP_054766	Q9UNZ5	L10K_HUMAN	Leydig cell tumor 10 kDa protein	88										ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(19;7.7e-24)|Epithelial(5;2.53e-19)			CAAGAAGAAAGGGGCAGCTGC	0.597													14	43					0	0	0.001855	0	0
GIPC1	10755	broad.mit.edu	37	19	14591154	14591154	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:14591154G>A	uc002myt.2	-	6	888	c.618C>T	c.(616-618)ACC>ACT	p.T206T	GIPC1_uc002myu.2_Silent_p.T206T|GIPC1_uc002myv.2_Silent_p.T109T|GIPC1_uc002myw.2_Silent_p.T109T|GIPC1_uc002myx.2_Silent_p.T206T|GIPC1_uc002myy.2_Silent_p.T109T	NM_005716	NP_005707	O14908	GIPC1_HUMAN	regulator of G-protein signalling 19 interacting	206	PDZ.				endothelial cell migration|G-protein coupled receptor protein signaling pathway|glutamate secretion|negative regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|protein targeting|regulation of protein stability|regulation of synaptic plasticity|synaptic transmission	cell cortex|dendritic shaft|dendritic spine|membrane fraction|soluble fraction|synaptic vesicle|vesicle membrane	actin binding|myosin binding|protein homodimerization activity|receptor binding				0						TCAGCGTGAAGGTACGGCCTC	0.701											OREG0025316	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	12	43					0	0	0.002450	0	0
NOTCH3	4854	broad.mit.edu	37	19	15273333	15273333	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:15273333C>T	uc002nan.2	-	32	5932	c.5856G>A	c.(5854-5856)GTG>GTA	p.V1952V		NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	1952	Cytoplasmic (Potential).|ANK 4.				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			AAGTGGCTTCCACGTTGTTCA	0.587													10	46					0	0	0.001855	0	0
NOTCH3	4854	broad.mit.edu	37	19	15302455	15302455	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:15302455C>T	uc002nan.2	-	6	892	c.816G>A	c.(814-816)ACG>ACA	p.T272T	NOTCH3_uc002nao.1_Silent_p.T272T	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	272	Extracellular (Potential).|EGF-like 6; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			CCACGTCCTCCGTGCAGAACT	0.652													14	15					0	0	0.003163	0	0
WIZ	58525	broad.mit.edu	37	19	15558987	15558987	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:15558987G>A	uc002nbb.3	-	2	346	c.132C>T	c.(130-132)TTC>TTT	p.F44F	MIR1470_hsa-mir-1470|MI0007075_5'Flank	NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						nucleus	zinc ion binding				0						GGGTGGACCGGAAGATGCCAC	0.647													46	41					0	0	0.003610	0	0
OR10H3	26532	broad.mit.edu	37	19	15852473	15852473	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:15852473C>T	uc010xoq.1	+	1	271	c.271C>T	c.(271-273)CGT>TGT	p.R91C		NM_013938	NP_039226	O60404	O10H3_HUMAN	olfactory receptor, family 10, subfamily H,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTTCACCCATCGTTCCATCAC	0.498													67	239					0	0	0.003610	0	0
OR10H1	26539	broad.mit.edu	37	19	15918182	15918182	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:15918182G>A	uc002nbq.2	-	1	755	c.666C>T	c.(664-666)ATC>ATT	p.I222I		NM_013940	NP_039228	Q9Y4A9	O10H1_HUMAN	olfactory receptor, family 10, subfamily H,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGCGGCCACGATGAAGGCAT	0.577													27	26					0	0	0.006999	0	0
CYP4F11	57834	broad.mit.edu	37	19	16032847	16032847	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:16032847C>T	uc002nbu.2	-	9	1151	c.1115G>A	c.(1114-1116)TGG>TAG	p.W372*	CYP4F11_uc010eab.1_Nonsense_Mutation_p.W372*|CYP4F11_uc002nbt.2_Nonsense_Mutation_p.W372*	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	372					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CTGCACTCACCATTCAATCTC	0.498													8	35					0	0	0.004482	0	0
NWD1	284434	broad.mit.edu	37	19	16918482	16918482	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:16918482C>T	uc002neu.3	+	18	4244	c.3822C>T	c.(3820-3822)CTC>CTT	p.L1274L	NWD1_uc002net.3_Silent_p.L1139L|NWD1_uc002nev.3_Silent_p.L1068L			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1274	WD 11.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						TTACGGGCCTCGTGTCGGGGG	0.577													32	25					0	0	0.002836	0	0
CPAMD8	27151	broad.mit.edu	37	19	17025574	17025574	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:17025574A>G	uc002nfb.2	-	28	3852	c.3820T>C	c.(3820-3822)TTC>CTC	p.F1274L		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1227						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						GGGTCCACGAAGATAAAGCTG	0.453													6	33					0	0	0.003080	0	0
UNC13A	23025	broad.mit.edu	37	19	17783268	17783268	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:17783268C>T	uc002nhd.2	-	5	453	c.453G>A	c.(451-453)GAG>GAA	p.E151E		NM_001080421	NP_001073890	Q9UPW8	UN13A_HUMAN	unc-13 homolog A	63	C2 1.				exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(3)	3						TATTCCACACCTCCACCGTCA	0.517													14	8					0	0	0.004007	0	0
SLC5A5	6528	broad.mit.edu	37	19	18004596	18004596	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:18004596C>T	uc002nhr.3	+	15	2189	c.1842C>T	c.(1840-1842)TTC>TTT	p.F614F		NM_000453	NP_000444	Q92911	SC5A5_HUMAN	solute carrier family 5 (sodium iodide	614	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|cellular response to cAMP|cellular response to gonadotropin stimulus|hormone biosynthetic process	integral to membrane|nucleus|plasma membrane	iodide transmembrane transporter activity|sodium:iodide symporter activity			skin(2)|ovary(1)|central_nervous_system(1)	4						GTCTGTTTTTCTTGGGGCAGA	0.577													7	2					0	0	0.003080	0	0
ELL	8178	broad.mit.edu	37	19	18556038	18556038	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:18556038T>C	uc002njh.2	-	11	1817	c.1745A>G	c.(1744-1746)AAA>AGA	p.K582R	ELL_uc010ebq.2_Missense_Mutation_p.K525R|ELL_uc002njg.2_Missense_Mutation_p.K449R	NM_006532	NP_006523	P55199	ELL_HUMAN	elongation factor RNA polymerase II	582					positive regulation of transcription elongation, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	Cajal body|nuclear speck|transcription elongation factor complex	protein binding			lung(1)	1				GBM - Glioblastoma multiforme(1328;7.81e-07)		ACTCACCTTTTTGATTTTTCG	0.517			T	MLL	AL								76	53					0	0	0.003610	0	0
TMEM59L	25789	broad.mit.edu	37	19	18729300	18729300	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:18729300C>T	uc002njy.3	+	7	985	c.898C>T	c.(898-900)CAG>TAG	p.Q300*		NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	300						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						CCTCAAGTTCCAGGTGGGTGG	0.642													3	3					0	0	0.004672	0	0
ZNF14	7561	broad.mit.edu	37	19	19822381	19822381	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:19822381G>A	uc002nnk.1	-	4	1863	c.1709C>T	c.(1708-1710)TCT>TTT	p.S570F		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	570	C2H2-type 17.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				TTTACTGGAAGAAATGAAGGC	0.418													16	16					0	0	0.003163	0	0
ZNF429	353088	broad.mit.edu	37	19	21720869	21720869	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:21720869C>T	uc002nqd.1	+	4	2151	c.2014C>T	c.(2014-2016)CGT>TGT	p.R672C	ZNF429_uc010ecu.1_Intron	NM_001001415	NP_001001415	Q86V71	ZN429_HUMAN	zinc finger protein 429	672					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						agatcgagaccgtcctggcta	0.025													3	2					0	0	0.004672	0	0
ZNF676	163223	broad.mit.edu	37	19	22362994	22362994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:22362994C>T	uc002nqs.1	-	3	1843	c.1525G>A	c.(1525-1527)GAA>AAA	p.E509K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	509	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				TTGCCACATTCTTCACATTTG	0.388													11	13					0	0	0.000673	0	0
ZNF676	163223	broad.mit.edu	37	19	22363473	22363473	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:22363473G>A	uc002nqs.1	-	3	1364	c.1046C>T	c.(1045-1047)TCC>TTC	p.S349F		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	349	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AAGGATTGAGGATCGATTAAA	0.403													10	17					0	0	0.000673	0	0
ZNF99	7652	broad.mit.edu	37	19	22941130	22941130	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:22941130A>T	uc010xrh.1	-	5	1308	c.1308T>A	c.(1306-1308)CAT>CAA	p.H436Q		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				GAATTATCTTATGTTTTCTAA	0.333													7	7					0	0	0.006214	0	0
ZNF536	9745	broad.mit.edu	37	19	31039620	31039620	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:31039620G>A	uc002nsu.1	+	4	3232	c.3094G>A	c.(3094-3096)GAT>AAT	p.D1032N	ZNF536_uc010edd.1_Missense_Mutation_p.D1032N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1032					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					GAAACGCAAAGATAACACCAT	0.552													21	17					0	0	0.001216	0	0
TSHZ3	57616	broad.mit.edu	37	19	31767601	31767601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:31767601G>A	uc002nsy.3	-	2	3163	c.3098C>T	c.(3097-3099)CCC>CTC	p.P1033L		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	1033					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					GTCTTCCTCGGGGGAGGACGT	0.498													4	20					0	0	0.000602	0	0
ANKRD27	84079	broad.mit.edu	37	19	33130265	33130265	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:33130265G>A	uc002ntn.1	-	12	1269	c.1113C>T	c.(1111-1113)CCC>CCT	p.P371P	ANKRD27_uc002nto.1_Silent_p.P371P	NM_032139	NP_115515	Q96NW4	ANR27_HUMAN	ankyrin repeat domain 27 (VPS9 domain)	371	VPS9.				early endosome to late endosome transport	early endosome|lysosome	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(2)|skin(2)|pancreas(1)	5	Esophageal squamous(110;0.137)					ATCTTACAGGGGGTTTAGCAG	0.507													13	32					0	0	0.002450	0	0
LSM14A	26065	broad.mit.edu	37	19	34687573	34687573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:34687573C>T	uc002nvb.3	+	3	516	c.320C>T	c.(319-321)TCC>TTC	p.S107F	LSM14A_uc002nva.3_Missense_Mutation_p.S107F|LSM14A_uc010xru.1_Missense_Mutation_p.S107F	NM_001114093	NP_001107565	Q8ND56	LS14A_HUMAN	LSM14 homolog A isoform a	107					cytoplasmic mRNA processing body assembly|multicellular organismal development|regulation of translation	cytoplasmic mRNA processing body|intracellular membrane-bounded organelle|stress granule				skin(1)	1	Esophageal squamous(110;0.162)					TCATTCCAGTCCATGGGTTCT	0.433													37	83					0	0	0.006230	0	0
KIAA0355	9710	broad.mit.edu	37	19	34832632	34832632	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:34832632C>T	uc002nvd.3	+	10	2652	c.1793C>T	c.(1792-1794)CCC>CTC	p.P598L		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	598										ovary(1)	1	Esophageal squamous(110;0.162)					GGTAATTTCCCCAGGACTACA	0.443													11	33					0	0	0.000978	0	0
ZNF792	126375	broad.mit.edu	37	19	35449162	35449162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:35449162G>A	uc002nxh.1	-	4	1984	c.1597C>T	c.(1597-1599)CCT>TCT	p.P533S		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	533					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			CACTCATAAGGCCGCTCGCCG	0.522													12	12					0	0	0.000978	0	0
ZNF792	126375	broad.mit.edu	37	19	35449497	35449498	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:35449497_35449498GG>AA	uc002nxh.1	-	4	1648_1649	c.1261_1262CC>TT	c.(1261-1263)CCT>TTT	p.P421F		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	421					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			ACACTTGTAAGGTCTTTCTCCA	0.48													11	32					0	0	0.004672	0	0
CD22	933	broad.mit.edu	37	19	35829139	35829139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:35829139C>T	uc010edt.2	+	6	1131	c.1054C>T	c.(1054-1056)CTT>TTT	p.L352F	CD22_uc010xst.1_Missense_Mutation_p.L180F|CD22_uc010edu.2_Intron|CD22_uc010edv.2_Missense_Mutation_p.L352F|CD22_uc002nzb.3_Intron|CD22_uc010edx.2_RNA	NM_001771	NP_001762	P20273	CD22_HUMAN	CD22 molecule precursor	352	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion		protein binding|sugar binding			ovary(5)|lung(3)|breast(1)	9	all_lung(56;9.78e-09)|Lung NSC(56;1.46e-08)|Esophageal squamous(110;0.162)		Epithelial(14;5.83e-19)|OV - Ovarian serous cystadenocarcinoma(14;3.19e-18)|all cancers(14;3.41e-16)|LUSC - Lung squamous cell carcinoma(66;0.0417)		OspA lipoprotein(DB00045)	AGTCGAGTTTCTTTGCATGTC	0.537													21	30					0	0	0.003954	0	0
GAPDHS	26330	broad.mit.edu	37	19	36029566	36029566	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:36029566G>A	uc002oaf.1	+	4	546	c.430G>A	c.(430-432)GAG>AAG	p.E144K		NM_014364	NP_055179	O14556	G3PT_HUMAN	glyceraldehyde-3-phosphate dehydrogenase,	144					gluconeogenesis|glycolysis|positive regulation of glycolysis|sperm motility	cytosol	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity|NAD binding|protein binding				0	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		NADH(DB00157)	GGACAACCATGAGATCTCTGT	0.512													13	21					0	0	0.002450	0	0
KIRREL2	84063	broad.mit.edu	37	19	36351226	36351226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:36351226C>T	uc002ocb.3	+	6	913	c.701C>T	c.(700-702)TCG>TTG	p.S234L	KIRREL2_uc002obz.3_Missense_Mutation_p.S234L|KIRREL2_uc002oca.3_Missense_Mutation_p.S184L|KIRREL2_uc002occ.3_Missense_Mutation_p.S181L|KIRREL2_uc002ocd.3_Missense_Mutation_p.S231L	NM_199180	NP_954649	Q6UWL6	KIRR2_HUMAN	kin of IRRE-like 2 isoform c	234	Ig-like C2-type 3.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3	all_lung(56;7.14e-07)|Lung NSC(56;1.12e-06)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTGTCTGCTTCGCCACACACT	0.577													7	7					0	0	0.006214	0	0
ZNF585B	92285	broad.mit.edu	37	19	37676996	37676996	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:37676996G>A	uc002ofq.2	-	5	1697	c.1443C>T	c.(1441-1443)CTC>CTT	p.L481L	uc002ofp.1_5'Flank|ZNF585B_uc002ofr.1_Silent_p.L295L	NM_152279	NP_689492	Q52M93	Z585B_HUMAN	zinc finger protein 585B	481	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GATGTGTAATGAGATTTGACC	0.403													24	53					0	0	0.002445	0	0
RYR1	6261	broad.mit.edu	37	19	38990623	38990623	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:38990623C>T	uc002oit.2	+	45	7420	c.7290C>T	c.(7288-7290)ATC>ATT	p.I2430I	RYR1_uc002oiu.2_Silent_p.I2430I|RYR1_uc002oiv.1_5'UTR	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	2430	Cytoplasmic.|6 X approximate repeats.				muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	CCGCCTTGATCGACCTGCTCG	0.612													11	20					0	0	0.001855	0	0
RYR1	6261	broad.mit.edu	37	19	39023320	39023320	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:39023320C>T	uc002oit.2	+	78	11333	c.11203C>T	c.(11203-11205)CTG>TTG	p.L3735L	RYR1_uc002oiu.2_Silent_p.L3730L|RYR1_uc002oiv.1_Silent_p.L650L|RYR1_uc010xuf.1_Silent_p.L655L	NM_000540	NP_000531	P21817	RYR1_HUMAN	skeletal muscle ryanodine receptor isoform 1	3735					muscle contraction|release of sequestered calcium ion into cytosol|response to caffeine|response to hypoxia	cell cortex|cytosol|I band|integral to plasma membrane|junctional sarcoplasmic reticulum membrane|smooth endoplasmic reticulum|terminal cisterna	calcium ion binding|calmodulin binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(7)|pancreas(2)|breast(1)|central_nervous_system(1)|skin(1)	12	all_cancers(60;7.91e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)		Dantrolene(DB01219)	GAGCTGCCACCTGGAGGAGGG	0.617													7	29					0	0	0.001984	0	0
PLEKHG2	64857	broad.mit.edu	37	19	39913434	39913434	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:39913434C>T	uc010xuz.1	+	18	2065	c.1740C>T	c.(1738-1740)ACC>ACT	p.T580T	PLEKHG2_uc010xuy.1_Silent_p.T521T|PLEKHG2_uc002olj.2_Intron|PLEKHG2_uc010xva.1_Silent_p.T358T	NM_022835	NP_073746	Q9H7P9	PKHG2_HUMAN	common-site lymphoma/leukemia guanine nucleotide	580					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity			skin(2)|pancreas(1)|breast(1)	4	all_cancers(60;3.08e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;6.57e-07)|Ovarian(47;0.0569)		Epithelial(26;2.92e-26)|all cancers(26;2.01e-23)|Lung(45;0.000499)|LUSC - Lung squamous cell carcinoma(53;0.000657)			ACAGCGAAACCCTCACATTCC	0.597													10	19					0	0	0.000673	0	0
FCGBP	8857	broad.mit.edu	37	19	40424301	40424301	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:40424301C>T	uc002omp.3	-	4	1910	c.1902G>A	c.(1900-1902)GTG>GTA	p.V634V		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	634	VWFD 1.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TTGCGAACTCCACAGCGTCAG	0.607													48	80					0	0	0.003610	0	0
ATP1A3	478	broad.mit.edu	37	19	42482796	42482796	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:42482796G>A	uc002osg.2	-	12	1746	c.1592C>T	c.(1591-1593)GCC>GTC	p.A531V	ATP1A3_uc010xwf.1_Missense_Mutation_p.A542V|ATP1A3_uc010xwg.1_Missense_Mutation_p.A501V|ATP1A3_uc010xwh.1_Missense_Mutation_p.A544V|ATP1A3_uc002osh.2_Missense_Mutation_p.A531V	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	531	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CTCAAGGTAGGCATTCTGGAA	0.667													24	39					0	0	0.003330	0	0
ZNF404	342908	broad.mit.edu	37	19	44377618	44377618	+	Missense_Mutation	SNP	C	T	T	rs35756172		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:44377618C>T	uc002oxs.3	-	2	748	c.739G>A	c.(739-741)GAA>AAA	p.E247K		NM_001033719	NP_001028891	Q494X3	ZN404_HUMAN	zinc finger protein 404	250	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				CTAAACGTTTCCCCACATTCC	0.388													19	35					0	0	0.007413	0	0
ZNF221	7638	broad.mit.edu	37	19	44471349	44471349	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:44471349G>A	uc002oxx.2	+	6	2023	c.1695G>A	c.(1693-1695)AAG>AAA	p.K565K	ZNF221_uc010ejb.1_Silent_p.K565K|ZNF221_uc010xws.1_Silent_p.K565K	NM_013359	NP_037491	Q9UK13	ZN221_HUMAN	zinc finger protein 221	565	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1		Prostate(69;0.0352)				ATAATTGTAAGGAATGTGGAA	0.453													19	36					0	0	0.002299	0	0
ZNF233	353355	broad.mit.edu	37	19	44777201	44777201	+	Silent	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:44777201A>C	uc002oyz.1	+	5	515	c.388A>C	c.(388-390)AGG>CGG	p.R130R	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_5'UTR	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				TCAAGGCAAGAGGTCCAAGTT	0.378													13	26					0	0	0.001855	0	0
ZNF180	7733	broad.mit.edu	37	19	44983505	44983505	+	Missense_Mutation	SNP	G	A	A	rs138817761		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:44983505G>A	uc002ozf.3	-	4	611	c.329C>T	c.(328-330)TCT>TTT	p.S110F	ZNF180_uc002ozh.3_5'UTR|ZNF180_uc002ozi.3_Missense_Mutation_p.S83F|ZNF180_uc002ozg.3_Missense_Mutation_p.S109F|ZNF180_uc010ejm.2_Missense_Mutation_p.S85F	NM_013256	NP_037388	Q9UJW8	ZN180_HUMAN	zinc finger protein 180	110	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Prostate(69;0.0435)				CTTACCCCAAGAGACTAGGTC	0.463													20	48					0	0	0.002780	0	0
CLPTM1	1209	broad.mit.edu	37	19	45494515	45494515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:45494515C>T	uc002pai.2	+	12	1454	c.1439C>T	c.(1438-1440)TCC>TTC	p.S480F	CLPTM1_uc010xxf.1_Missense_Mutation_p.S378F|CLPTM1_uc010xxg.1_Missense_Mutation_p.S466F	NM_001294	NP_001285	O96005	CLPT1_HUMAN	cleft lip and palate associated transmembrane	480	Helical; (Potential).				cell differentiation|multicellular organismal development|regulation of T cell differentiation in thymus	external side of plasma membrane|integral to plasma membrane				ovary(1)	1		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00354)|Epithelial(262;0.187)		CGGTACCTGTCCTGGATCCTC	0.647													78	111					0	0	0.003610	0	0
MARK4	57787	broad.mit.edu	37	19	45774924	45774924	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:45774924C>T	uc002pbb.1	+	8	749	c.744C>T	c.(742-744)ACC>ACT	p.T248T	MARK4_uc002paz.1_Missense_Mutation_p.P59L|MARK4_uc002pba.1_Silent_p.T248T|MARK4_uc002pbc.1_Silent_p.T114T			Q96L34	MARK4_HUMAN	RecName: Full=MAP/microtubule affinity-regulating kinase 4;          EC=2.7.11.1; AltName: Full=MAP/microtubule affinity-regulating kinase-like 1;	248	Protein kinase.				microtubule bundle formation|nervous system development|positive regulation of programmed cell death	centrosome|neuron projection	ATP binding|gamma-tubulin binding|microtubule binding|protein serine/threonine kinase activity|tau-protein kinase activity|ubiquitin binding			central_nervous_system(2)|large_intestine(1)	3		all_neural(266;0.224)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.0102)		TCCTGTACACCCTCGTCAGCG	0.662													13	34					0	0	0.002450	0	0
RTN2	6253	broad.mit.edu	37	19	45996558	45996558	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:45996558G>A	uc002pcb.2	-	5	1121	c.893C>T	c.(892-894)CCT>CTT	p.P298L	RTN2_uc002pcc.2_Intron|RTN2_uc002pcd.2_Intron	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	298						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		TGTCCACAGAGGTGGGGACAA	0.522													23	33					0	0	0.002299	0	0
VASP	7408	broad.mit.edu	37	19	46027396	46027396	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:46027396C>T	uc002pcg.2	+	10	1294	c.952C>T	c.(952-954)CCA>TCA	p.P318S	VASP_uc010eki.2_Missense_Mutation_p.P152S|VASP_uc002pci.2_Missense_Mutation_p.P304S	NM_003370	NP_003361	P50552	VASP_HUMAN	vasodilator-stimulated phosphoprotein	318	EVH2.				axon guidance|cell junction assembly|T cell receptor signaling pathway	actin cytoskeleton|cytosol|filopodium membrane|focal adhesion|lamellipodium membrane	actin binding|profilin binding|SH3 domain binding				0		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.0145)|GBM - Glioblastoma multiforme(486;0.154)		CACAACCTTGCCAAGGTAGGC	0.328											OREG0025556	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	10	17					0	0	0.001368	0	0
CCDC61	729440	broad.mit.edu	37	19	46511477	46511477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:46511477G>A	uc002pdw.2	+	6	640	c.640G>A	c.(640-642)GAG>AAG	p.E214K		NM_001080402	NP_001073871			coiled-coil domain containing 61											ovary(1)	1		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00221)|GBM - Glioblastoma multiforme(486;0.0233)|Epithelial(262;0.164)		GTCACTGAAGGAGGAACTGGG	0.617													6	11					0	0	0.004482	0	0
ZC3H4	23211	broad.mit.edu	37	19	47570287	47570288	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:47570287_47570288GG>AA	uc002pga.3	-	15	3275_3276	c.3237_3238CC>TT	c.(3235-3240)GACCCT>GATTCT	p.P1080S	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	1080							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		TGCAGCCGAGGGTCGGTGGGGG	0.703													9	14					0	0	0.004672	0	0
ZC3H4	23211	broad.mit.edu	37	19	47597674	47597674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:47597674G>A	uc002pga.3	-	3	391	c.353C>T	c.(352-354)TCG>TTG	p.S118L	ZC3H4_uc002pgb.1_RNA	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	118	Potential.						nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		CCTCTTCTTCGACCTCCTTTT	0.557													84	166					0	0	0.003610	0	0
CCDC9	26093	broad.mit.edu	37	19	47773841	47773841	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:47773841C>T	uc010xym.1	+	10	1188	c.981C>T	c.(979-981)CCC>CCT	p.P327P		NM_015603	NP_056418	Q9Y3X0	CCDC9_HUMAN	coiled-coil domain containing 9	327											0		all_cancers(25;0.0432)|all_epithelial(76;0.00812)|Medulloblastoma(540;0.0208)|all_neural(266;0.0416)|Hepatocellular(1079;0.114)		OV - Ovarian serous cystadenocarcinoma(262;8.51e-95)|Epithelial(262;1.15e-92)|all cancers(93;7.67e-84)|GBM - Glioblastoma multiforme(486;0.024)|STAD - Stomach adenocarcinoma(1328;0.183)		CCCCGAAGCCCCCTACTTTTG	0.647													14	41					0	0	0.004007	0	0
GPR77	27202	broad.mit.edu	37	19	47844877	47844877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:47844877C>T	uc010ela.1	+	2	1039	c.821C>T	c.(820-822)CCC>CTC	p.P274L	GPR77_uc002pgk.1_Missense_Mutation_p.P274L	NM_018485	NP_060955	Q9P296	C5ARL_HUMAN	G protein-coupled receptor 77	274	Extracellular (Potential).				chemotaxis	integral to membrane|plasma membrane	C5a anaphylatoxin receptor activity			ovary(1)	1		all_cancers(25;1.72e-06)|all_lung(116;2.15e-05)|all_epithelial(76;3.44e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.0652)|Ovarian(192;0.086)		all cancers(93;0.000129)|OV - Ovarian serous cystadenocarcinoma(262;0.000415)|Epithelial(262;0.0109)|GBM - Glioblastoma multiforme(486;0.0138)		CGGGCTGAACCCCTCATCGTG	0.647													13	29					0	0	0.001855	0	0
SLC8A2	6543	broad.mit.edu	37	19	47969428	47969428	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:47969428G>A	uc002pgx.2	-	2	511	c.233C>T	c.(232-234)GCC>GTC	p.A78V	SLC8A2_uc010xyq.1_Intron|SLC8A2_uc010xyr.1_Intron|SLC8A2_uc010ele.2_Missense_Mutation_p.A78V	NM_015063	NP_055878	Q9UPR5	NAC2_HUMAN	solute carrier family 8 member 2 precursor	78	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(1)	4		all_cancers(25;3.05e-07)|all_lung(116;4.19e-06)|Lung NSC(112;7.16e-06)|all_epithelial(76;7.65e-06)|all_neural(266;0.0652)|Ovarian(192;0.086)|Breast(70;0.173)		OV - Ovarian serous cystadenocarcinoma(262;0.000501)|all cancers(93;0.00058)|Epithelial(262;0.0181)|GBM - Glioblastoma multiforme(486;0.0457)		GTAGACCATGGCCACAAAGTA	0.617													9	17					0	0	0.004482	0	0
SULT2A1	6822	broad.mit.edu	37	19	48386976	48386976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:48386976G>A	uc002phr.2	-	2	343	c.203C>T	c.(202-204)TCT>TTT	p.S68F		NM_003167	NP_003158	Q06520	ST2A1_HUMAN	bile-salt sulfotransferase 2A1	68					3'-phosphoadenosine 5'-phosphosulfate metabolic process|bile acid catabolic process|cellular lipid metabolic process|digestion|sulfation|xenobiotic metabolic process	cytosol	bile-salt sulfotransferase activity			ovary(1)|pancreas(1)	2		all_cancers(25;3.02e-09)|all_lung(116;6.48e-07)|all_epithelial(76;7.35e-07)|Lung NSC(112;1.56e-06)|all_neural(266;0.0146)|Ovarian(192;0.0261)|Breast(70;0.203)		OV - Ovarian serous cystadenocarcinoma(262;0.000254)|all cancers(93;0.000545)|Epithelial(262;0.0217)|GBM - Glioblastoma multiforme(486;0.0552)		GATGGGCACAGATTGGATCCA	0.483													13	24					0	0	0.006122	0	0
FUT2	2524	broad.mit.edu	37	19	49206302	49206302	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:49206302A>T	uc002pke.3	+	2	200	c.89A>T	c.(88-90)CAG>CTG	p.Q30L	FUT2_uc010emc.2_Missense_Mutation_p.Q30L	NM_001097638	NP_001091107	Q10981	FUT2_HUMAN	fucosyltransferase 2	30	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	galactoside 2-alpha-L-fucosyltransferase activity			central_nervous_system(1)	1		all_lung(116;4.89e-06)|all_epithelial(76;7.04e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.00011)|all cancers(93;0.000238)|GBM - Glioblastoma multiforme(486;0.0164)|Epithelial(262;0.017)		CACGTTCAGCAGCGGCTAGCG	0.537													39	96					0	0	0.006230	0	0
GYS1	2997	broad.mit.edu	37	19	49473059	49473059	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:49473059G>A	uc002plp.2	-	15	2104	c.1863C>T	c.(1861-1863)TTC>TTT	p.F621F	GYS1_uc010xzy.1_Silent_p.F254F|GYS1_uc010emm.2_Silent_p.F557F|GYS1_uc010xzz.1_Silent_p.F541F	NM_002103	NP_002094	P13807	GYS1_HUMAN	glycogen synthase 1 (muscle) isoform 1	621					glucose metabolic process|glycogen biosynthetic process	cytosol	glycogen (starch) synthase activity|protein binding			ovary(2)	2		all_lung(116;4.89e-05)|Lung NSC(112;8.3e-05)|all_epithelial(76;8.64e-05)|all_neural(266;0.0506)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000164)|all cancers(93;0.000226)|GBM - Glioblastoma multiforme(486;0.00561)|Epithelial(262;0.0286)		GCTCGTAGGTGAAGTGCTCTG	0.622													16	22					0	0	0.006122	0	0
TRPM4	54795	broad.mit.edu	37	19	49671637	49671637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:49671637C>T	uc002pmw.2	+	5	641	c.569C>T	c.(568-570)CCC>CTC	p.P190L	TRPM4_uc010emu.2_Missense_Mutation_p.P190L|TRPM4_uc010yak.1_5'UTR|TRPM4_uc002pmx.2_Missense_Mutation_p.P16L|TRPM4_uc010emv.2_Intron|TRPM4_uc010yal.1_Intron	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	190	Cytoplasmic (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		GGTGTGGCCCCCTGGGGTGTG	0.512													17	41					0	0	0.004990	0	0
TRPM4	54795	broad.mit.edu	37	19	49703939	49703939	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:49703939G>A	uc002pmw.2	+	19	2922	c.2850G>A	c.(2848-2850)GGG>GGA	p.G950G	TRPM4_uc010emu.2_Silent_p.G805G|TRPM4_uc010yak.1_Silent_p.G414G|TRPM4_uc002pmx.2_Silent_p.G776G|TRPM4_uc010emv.2_Silent_p.G835G|TRPM4_uc010yal.1_Silent_p.G596G|TRPM4_uc002pmy.2_Silent_p.G292G	NM_017636	NP_060106	Q8TD43	TRPM4_HUMAN	transient receptor potential cation channel,	950	Helical; (Potential).				dendritic cell chemotaxis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell proliferation|protein sumoylation|regulation of T cell cytokine production	endoplasmic reticulum|Golgi apparatus|integral to membrane|plasma membrane	ATP binding|calcium activated cation channel activity|calmodulin binding			ovary(1)|central_nervous_system(1)	2		all_lung(116;8.54e-05)|Lung NSC(112;0.000139)|all_neural(266;0.0506)|Ovarian(192;0.15)		all cancers(93;2.88e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000222)|GBM - Glioblastoma multiforme(486;0.00339)|Epithelial(262;0.00751)		CCACGGAGGGGCTCCTGAGGC	0.612													10	28					0	0	0.006214	0	0
SCAF1	58506	broad.mit.edu	37	19	50150025	50150026	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:50150025_50150026CC>TT	uc002poq.2	+	6	540_541	c.416_417CC>TT	c.(415-417)CCC>CTT	p.P139L		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	139					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GACAGAGATCCCATCCCTCTGC	0.663													8	5					0	0	0.004672	0	0
SCAF1	58506	broad.mit.edu	37	19	50156133	50156133	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:50156133G>A	uc002poq.2	+	7	2611	c.2487G>A	c.(2485-2487)CGG>CGA	p.R829R		NM_021228	NP_067051	Q9H7N4	SFR19_HUMAN	SR-related CTD-associated factor 1	829					mRNA processing|RNA splicing	nucleus	RNA binding				0		all_lung(116;1.05e-05)|Lung NSC(112;3.77e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00113)|GBM - Glioblastoma multiforme(134;0.0204)		GTTCTTCCCGGAAGGTGAAGC	0.677													8	13					0	0	0.006214	0	0
BCL2L12	83596	broad.mit.edu	37	19	50169132	50169132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:50169132C>T	uc002ppa.2	+	1	734	c.52C>T	c.(52-54)CGG>TGG	p.R18W	IRF3_uc002pot.1_5'Flank|IRF3_uc010end.1_5'Flank|IRF3_uc002pox.1_5'Flank|IRF3_uc002poy.1_5'Flank|IRF3_uc002pou.2_5'UTR|IRF3_uc002pov.2_5'UTR|IRF3_uc002pow.2_5'UTR|IRF3_uc002poz.1_5'Flank|IRF3_uc010ene.1_5'Flank|BCL2L12_uc002ppb.2_Missense_Mutation_p.R18W	NM_138639	NP_619580	Q9HB09	B2L12_HUMAN	BCL2-like 12 isoform 1	18					apoptosis					central_nervous_system(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.000681)|GBM - Glioblastoma multiforme(134;0.0214)		TTTGGGTTTCCGGCCAGAGGC	0.577													27	47					0	0	0.004656	0	0
PRMT1	3276	broad.mit.edu	37	19	50189873	50189873	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:50189873C>T	uc010enf.1	+	10	964	c.922C>T	c.(922-924)CCG>TCG	p.P308S	PRMT1_uc002ppc.1_RNA|PRMT1_uc002ppd.2_Missense_Mutation_p.P284S|PRMT1_uc002ppe.2_Missense_Mutation_p.P290S|PRMT1_uc002ppf.2_RNA|PRMT1_uc002ppg.2_Missense_Mutation_p.P255S|PRMT1_uc010ybb.1_5'Flank|C19orf76_uc002pph.2_5'Flank	NM_001536	NP_001527	Q8WUW5	Q8WUW5_HUMAN	HMT1 hnRNP methyltransferase-like 2 isoform 1	289						cytoplasm	protein methyltransferase activity			ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00103)|GBM - Glioblastoma multiforme(134;0.012)		CCCCGAGTCCCCGTACACGCA	0.687													4	16					0	0	0.001168	0	0
MYBPC2	4606	broad.mit.edu	37	19	50944138	50944138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:50944138G>A	uc002psf.2	+	8	625	c.574G>A	c.(574-576)GAG>AAG	p.E192K		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	192					cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		ACCCGCCAGGGAGGTGGTGGA	0.572													4	14					0	0	0.001168	0	0
ACPT	93650	broad.mit.edu	37	19	51297146	51297146	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:51297146G>A	uc002pta.1	+	8	780	c.780G>A	c.(778-780)GGG>GGA	p.G260G		NM_033068	NP_149059	Q9BZG2	PPAT_HUMAN	testicular acid phosphatase precursor	260	Extracellular (Potential).					integral to membrane	acid phosphatase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00641)|GBM - Glioblastoma multiforme(134;0.028)		CATCCTCAGGGATCCTGCTGA	0.592													46	83					0	0	0.003610	0	0
KLK9	284366	broad.mit.edu	37	19	51512788	51512788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:51512788G>A	uc002pux.1	-	1	103	c.16C>T	c.(16-18)CTC>TTC	p.L6F	KLK9_uc002puw.1_RNA|KLK9_uc010eol.1_Missense_Mutation_p.P29L	NM_012315	NP_036447	Q9UKQ9	KLK9_HUMAN	kallikrein-related peptidase 9 precursor	6					proteolysis	extracellular region	serine-type endopeptidase activity			central_nervous_system(1)	1		all_neural(266;0.0652)		OV - Ovarian serous cystadenocarcinoma(262;0.00328)|GBM - Glioblastoma multiforme(134;0.00885)		AGAGCACAGAGGAGTCCCAGC	0.607													14	14					0	0	0.002450	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033135	52033135	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:52033135G>A	uc002pwy.2	-	5	1017	c.855C>T	c.(853-855)AGC>AGT	p.S285S	SIGLEC6_uc002pwz.2_Silent_p.S269S|SIGLEC6_uc002pxa.2_Silent_p.S285S|SIGLEC6_uc010ydb.1_Silent_p.S222S|SIGLEC6_uc010ydc.1_Silent_p.S285S|SIGLEC6_uc010eoz.1_Silent_p.S263S|SIGLEC6_uc010epb.1_Silent_p.S238S|SIGLEC6_uc010epa.1_Silent_p.S274S	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	285	Ig-like C2-type 2.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CCTGGAACCAGCTCAGGTGTG	0.612													25	34					0	0	0.004656	0	0
SIGLEC14	100049587	broad.mit.edu	37	19	52149079	52149079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:52149079C>T	uc002pxf.3	-	3	776	c.656G>A	c.(655-657)GGA>GAA	p.G219E		NM_001098612	NP_001092082	Q08ET2	SIG14_HUMAN	sialic acid binding Ig-like lectin 14 precursor	219	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane|plasma membrane	protein binding|sugar binding			ovary(1)	1		all_neural(266;0.0299)		GBM - Glioblastoma multiforme(134;0.000965)|OV - Ovarian serous cystadenocarcinoma(262;0.0195)		CACCTGAGCTCCTTGGCGTTT	0.642													16	17					0	0	0.002299	0	0
FPR3	2359	broad.mit.edu	37	19	52327119	52327119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:52327119G>A	uc002pxt.1	+	2	302	c.118G>A	c.(118-120)GGG>AGG	p.G40R		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	40	Helical; Name=1; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						CTTTGTCTTCGGGGTCCTGGG	0.552													22	51					0	0	0.002299	0	0
ZNF611	81856	broad.mit.edu	37	19	53209551	53209551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:53209551G>A	uc002pzz.2	-	7	1074	c.757C>T	c.(757-759)CAT>TAT	p.H253Y	ZNF611_uc010eqc.2_Missense_Mutation_p.H183Y|ZNF611_uc010ydo.1_Missense_Mutation_p.H183Y|ZNF611_uc010ydr.1_Missense_Mutation_p.H184Y|ZNF611_uc010ydp.1_Missense_Mutation_p.H253Y|ZNF611_uc010ydq.1_Missense_Mutation_p.H253Y|ZNF611_uc002qaa.3_Missense_Mutation_p.H183Y	NM_030972	NP_112234	Q8N823	ZN611_HUMAN	zinc finger protein 611 isoform a	253	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.0233)|GBM - Glioblastoma multiforme(134;0.04)		TCTCCTAAATGGGGTATCTGG	0.378													14	94					0	0	0.004990	0	0
ZNF600	162966	broad.mit.edu	37	19	53270581	53270581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:53270581G>A	uc002qab.3	-	3	714	c.428C>T	c.(427-429)TCC>TTC	p.S143F		NM_198457	NP_940859	Q6ZNG1	ZN600_HUMAN	zinc finger protein 600	143					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.0241)|GBM - Glioblastoma multiforme(134;0.0404)		AGAATTCGGGGAATTATTCCC	0.393													36	77					0	0	0.003271	0	0
ZNF525	170958	broad.mit.edu	37	19	53884421	53884421	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:53884421C>T	uc010eqn.2	+	4	674	c.481C>T	c.(481-483)CTG>TTG	p.L161L	ZNF525_uc002qbl.2_Intron|ZNF765_uc010ydx.1_Intron	NR_003699				Homo sapiens cDNA FLJ39718 fis, clone SMINT2013695.												0						GGATAATTTTCTGAATTATTC	0.373													17	37					0	0	0.004007	0	0
ZNF331	55422	broad.mit.edu	37	19	54080487	54080487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:54080487C>T	uc002qbx.1	+	7	2107	c.673C>T	c.(673-675)CGG>TGG	p.R225W	ZNF331_uc002qby.1_Missense_Mutation_p.R225W|ZNF331_uc002qbz.1_Missense_Mutation_p.R225W|ZNF331_uc002qca.1_Missense_Mutation_p.R225W|ZNF331_uc010eqr.1_Missense_Mutation_p.R225W|ZNF331_uc002qcb.1_Missense_Mutation_p.R225W|ZNF331_uc002qcc.1_Missense_Mutation_p.R225W|ZNF331_uc002qcd.1_Missense_Mutation_p.R225W	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	225	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		AAAGGCCTTTCGGCGTGGTGA	0.473			T	?	follicular thyroid adenoma								20	37					0	0	0.001523	0	0
TMC4	147798	broad.mit.edu	37	19	54675684	54675684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:54675684G>A	uc010erf.2	-	2	398	c.266C>T	c.(265-267)CCT>CTT	p.P89L	TMC4_uc002qdo.2_Missense_Mutation_p.P83L	NM_001145303	NP_001138775	Q7Z404	TMC4_HUMAN	transmembrane channel-like 4 isoform 1	89	Extracellular (Potential).					integral to membrane				pancreas(1)	1	all_cancers(19;0.0065)|all_epithelial(19;0.00348)|all_lung(19;0.0175)|Lung NSC(19;0.0325)|Ovarian(34;0.19)					TTCCCGGGAAGGGTGAGGGTC	0.677													15	42					0	0	0.006122	0	0
LILRA2	11027	broad.mit.edu	37	19	55087361	55087361	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:55087361G>T	uc002qgg.3	+	6	1129	c.1040G>T	c.(1039-1041)CGG>CTG	p.R347L	LILRA2_uc010ern.2_Missense_Mutation_p.R347L|LILRA2_uc002qgf.2_Missense_Mutation_p.R347L|LILRA2_uc010yfe.1_Missense_Mutation_p.R347L|LILRA2_uc010yff.1_Missense_Mutation_p.R335L|LILRA2_uc010ero.2_Missense_Mutation_p.R335L|LILRA2_uc010yfg.1_Intron	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	347	Ig-like C2-type 4.|Extracellular (Potential).				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		TGTCAGTCACGGGGGCAGTTC	0.572													16	20					3.32936e-07	4.03819e-07	0.006122	1	0
LILRA1	11024	broad.mit.edu	37	19	55107160	55107160	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:55107160G>A	uc002qgh.1	+	6	900	c.718G>A	c.(718-720)GAG>AAG	p.E240K	LILRA2_uc010yfg.1_Missense_Mutation_p.E238K|LILRA1_uc010yfh.1_Missense_Mutation_p.E240K	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	240	Extracellular (Potential).|Ig-like C2-type 3.				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GGCCCCTGGGGAGAGCCTGAC	0.557													23	60					0	0	0.004656	0	0
LILRB4	11006	broad.mit.edu	37	19	55177763	55177763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:55177763G>A	uc002qgp.2	+	8	1309	c.947G>A	c.(946-948)AGG>AAG	p.R316K	LILRB4_uc002qgq.2_Missense_Mutation_p.R316K|LILRB4_uc002qgr.2_Missense_Mutation_p.R357K|LILRB4_uc010ert.2_Missense_Mutation_p.R357K|LILRB4_uc010eru.2_Missense_Mutation_p.R345K	NM_006847	NP_006838	Q8NHJ6	LIRB4_HUMAN	leukocyte immunoglobulin-like receptor,	316	Cytoplasmic (Potential).					integral to membrane|plasma membrane	antigen binding|receptor activity			ovary(3)	3				GBM - Glioblastoma multiforme(193;0.035)		GGCCTACAGAGGAGGTAATTC	0.617													10	29					0	0	0.000978	0	0
NLRP7	199713	broad.mit.edu	37	19	55441917	55441917	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:55441917C>T	uc002qih.3	-	9	2836	c.2760G>A	c.(2758-2760)TGG>TGA	p.W920*	NLRP7_uc002qig.3_Nonsense_Mutation_p.W892*|NLRP7_uc002qii.3_Nonsense_Mutation_p.W920*|NLRP7_uc010esk.2_Nonsense_Mutation_p.W920*|NLRP7_uc010esl.2_Nonsense_Mutation_p.W948*	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	920	LRR 8.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		GACAGAGAATCCACAATCCAC	0.378													27	56					0	0	0.007291	0	0
NLRP7	199713	broad.mit.edu	37	19	55451105	55451105	+	Missense_Mutation	SNP	G	A	A	rs143169084	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:55451105G>A	uc002qih.3	-	4	1158	c.1082C>T	c.(1081-1083)TCG>TTG	p.S361L	NLRP7_uc002qig.3_Missense_Mutation_p.S361L|NLRP7_uc002qii.3_Missense_Mutation_p.S361L|NLRP7_uc010esk.2_Missense_Mutation_p.S361L|NLRP7_uc010esl.2_Missense_Mutation_p.S389L	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	361	NACHT.						ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		CGCGGGGGCCGAGCCCAGCTG	0.632													7	28					0	0	0.003080	0	0
NLRP7	199713	broad.mit.edu	37	19	55451794	55451794	+	Silent	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:55451794A>T	uc002qih.3	-	4	469	c.393T>A	c.(391-393)TCT>TCA	p.S131S	NLRP7_uc002qig.3_Silent_p.S131S|NLRP7_uc002qii.3_Silent_p.S131S|NLRP7_uc010esk.2_Silent_p.S131S|NLRP7_uc010esl.2_Silent_p.S159S	NM_206828	NP_996611	Q8WX94	NALP7_HUMAN	NACHT, leucine rich repeat and PYD containing 7	131							ATP binding			large_intestine(1)|breast(1)|central_nervous_system(1)	3				GBM - Glioblastoma multiforme(193;0.0325)		TCCAGACCAAAGACTGTTTCT	0.418													108	207					0	0	0.003610	0	0
NLRP11	204801	broad.mit.edu	37	19	56321022	56321022	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:56321022C>T	uc010ygf.1	-	5	1665	c.954G>A	c.(952-954)AGG>AGA	p.R318R	NLRP11_uc002qlz.2_Silent_p.R219R|NLRP11_uc002qmb.2_Silent_p.R219R|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	318	NACHT.						ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CTGCCGACGCCCTCTGGCGGT	0.498													9	13					0	0	0.004482	0	0
NLRP4	147945	broad.mit.edu	37	19	56369793	56369793	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:56369793G>A	uc002qmd.3	+	3	1456	c.1034G>A	c.(1033-1035)TGG>TAG	p.W345*	NLRP4_uc002qmf.2_Nonsense_Mutation_p.W270*|NLRP4_uc010etf.2_Nonsense_Mutation_p.W176*	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	345	NACHT.						ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CTCCTCTGCTGGATCCTGTGT	0.478													19	28					0	0	0.001216	0	0
NLRP13	126204	broad.mit.edu	37	19	56423937	56423937	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:56423937C>T	uc010ygg.1	-	5	1271	c.1246G>A	c.(1246-1248)GAA>AAA	p.E416K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	416	NACHT.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		AAGAGAGTTTCGTTTTTTCTT	0.463													18	30					0	0	0.007413	0	0
NLRP8	126205	broad.mit.edu	37	19	56473470	56473470	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:56473470G>A	uc002qmh.2	+	4	2151	c.2080G>A	c.(2080-2082)GAC>AAC	p.D694N	NLRP8_uc010etg.2_Missense_Mutation_p.D694N	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	694						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TTGGTGGCAAGACTTATGCTC	0.483													29	62					0	0	0.003755	0	0
ZNF470	388566	broad.mit.edu	37	19	57089815	57089815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:57089815G>A	uc002qnl.3	+	6	2694	c.2018G>A	c.(2017-2019)GGA>GAA	p.G673E	ZNF470_uc010etn.2_Intron	NM_001001668	NP_001001668	Q6ECI4	ZN470_HUMAN	zinc finger protein 470	673					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Colorectal(82;5.46e-05)|Ovarian(87;0.0822)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0294)		ATTCATACTGGAGAAAGGCCC	0.398													10	31					0	0	0.000978	0	0
PEG3	5178	broad.mit.edu	37	19	57335922	57335922	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:57335922G>A	uc002qnu.2	-	1	453	c.102C>T	c.(100-102)ATC>ATT	p.I34I	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.I34I|PEG3_uc002qnv.2_Silent_p.I34I|PEG3_uc002qnw.2_Intron|PEG3_uc002qnx.2_Intron|PEG3_uc010etr.2_Silent_p.I34I	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	34					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CTTCTCCTATGATGACATCCG	0.483													22	39					0	0	0.002299	0	0
DUXA	503835	broad.mit.edu	37	19	57670564	57670564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:57670564C>T	uc002qoa.1	-	3	308	c.263G>A	c.(262-264)GGG>GAG	p.G88E		NM_001012729	NP_001012747	A6NLW8	DUXA_HUMAN	double homeobox A	88						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0123)		TTGATCTTGCCCCTGGCTCTG	0.458													25	41					0	0	0.001786	0	0
ZIK1	284307	broad.mit.edu	37	19	58102464	58102464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:58102464C>T	uc002qpg.2	+	4	1382	c.1285C>T	c.(1285-1287)CAT>TAT	p.H429Y	ZNF547_uc002qpm.3_Intron|ZIK1_uc002qph.2_Missense_Mutation_p.H374Y|ZIK1_uc002qpi.2_Missense_Mutation_p.H416Y|ZIK1_uc002qpj.2_Missense_Mutation_p.H326Y	NM_001010879	NP_001010879	Q3SY52	ZIK1_HUMAN	zinc finger protein interacting with K protein	429	C2H2-type 7.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		CCGGAGAATTCATACTGGAGC	0.463													4	18					0	0	0.000248	0	0
ZSCAN4	201516	broad.mit.edu	37	19	58189852	58189852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:58189852G>A	uc002qpu.2	+	5	1578	c.881G>A	c.(880-882)GGA>GAA	p.G294E		NM_152677	NP_689890	Q8NAM6	ZSCA4_HUMAN	zinc finger and SCAN domain containing 4	294					telomere maintenance via telomere lengthening|viral reproduction	nuclear chromosome, telomeric region	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		AGCAATGAGGGAAATTCCACA	0.473													17	40					0	0	0.004990	0	0
ZNF587	84914	broad.mit.edu	37	19	58370775	58370775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:58370775C>T	uc002qql.2	+	3	1133	c.995C>T	c.(994-996)TCT>TTT	p.S332F	ZNF587_uc002qqb.2_Missense_Mutation_p.S289F|ZNF587_uc010yhh.1_Missense_Mutation_p.S289F|ZNF587_uc002qqi.1_Missense_Mutation_p.S289F|ZNF587_uc002qqj.1_RNA|ZNF814_uc002qqk.2_Intron|ZNF587_uc010yhk.1_Missense_Mutation_p.S331F	NM_032828	NP_116217	Q96SQ5	ZN587_HUMAN	zinc finger protein 587	332	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)		TGTGGGAAATCTTTTGGTCAA	0.458													44	78					0	0	0.003610	0	0
TPO	7173	broad.mit.edu	37	2	1418267	1418268	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:1418267_1418268CC>TT	uc002qww.2	+	2	178_179	c.87_88CC>TT	c.(85-90)CTCCTT>CTTTTT	p.L30F	TPO_uc010ewj.2_Intron|TPO_uc010yin.1_Missense_Mutation_p.L30F|TPO_uc002qwu.2_Missense_Mutation_p.L30F|TPO_uc002qwr.2_Missense_Mutation_p.L30F|TPO_uc002qwx.2_Missense_Mutation_p.L30F|TPO_uc010yio.1_Missense_Mutation_p.L30F|TPO_uc010yip.1_Missense_Mutation_p.L30F	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	30	Extracellular (Potential).				cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	GGAAAGAACTCCTTTGGGGTAA	0.46													10	13					0	0	0.004672	0	0
LPIN1	23175	broad.mit.edu	37	2	11923964	11923964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:11923964G>A	uc010yjn.1	+	9	1440	c.1166G>A	c.(1165-1167)AGC>AAC	p.S389N	LPIN1_uc010yjm.1_Missense_Mutation_p.S474N|LPIN1_uc002rbt.2_Missense_Mutation_p.S389N|LPIN1_uc002rbs.2_Missense_Mutation_p.S425N	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	389					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		GATAAACGAAGCCGACATCTT	0.428													67	128					0	0	0.003610	0	0
SMC6	79677	broad.mit.edu	37	2	17860180	17860180	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:17860180C>T	uc002rco.2	-	25	3152	c.2856G>A	c.(2854-2856)CGG>CGA	p.R952R	SMC6_uc010exo.2_Silent_p.R952R|SMC6_uc002rcn.2_Silent_p.R952R	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	952					DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					CACAATAGGCCCGCTGAGATA	0.303													10	37					0	0	0.001368	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765931	18765931	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:18765931C>T	uc002rcz.2	-	5	856	c.752G>A	c.(751-753)GGG>GAG	p.G251E	NT5C1B_uc002rcy.2_Missense_Mutation_p.G251E|NT5C1B_uc010exr.2_Missense_Mutation_p.G193E|NT5C1B_uc010yju.1_Missense_Mutation_p.G191E|NT5C1B_uc002rda.2_Missense_Mutation_p.G191E|NT5C1B_uc010yjv.1_Missense_Mutation_p.G268E|NT5C1B_uc010yjw.1_Missense_Mutation_p.G234E|NT5C1B_uc010exs.2_Missense_Mutation_p.G253E|NT5C1B_uc002rdb.1_Missense_Mutation_p.G43E	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	251					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGGGTAGATCCCCCTGCGCTG	0.667													4	15					0	0	0.001168	0	0
APOB	338	broad.mit.edu	37	2	21236096	21236096	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:21236096G>A	uc002red.2	-	25	4280	c.4152C>T	c.(4150-4152)AGC>AGT	p.S1384S		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1384					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAGCCCGAAGGCTGAAATGGT	0.537													106	240					0	0	0.003610	0	0
HADHB	3032	broad.mit.edu	37	2	26501646	26501646	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:26501646C>T	uc002rgz.2	+	8	858	c.607C>T	c.(607-609)CGA>TGA	p.R203*	HADHB_uc010ykv.1_Nonsense_Mutation_p.R181*|HADHB_uc010ykw.1_Nonsense_Mutation_p.R188*|HADHB_uc002rha.2_Intron|HADHB_uc010ykx.1_Nonsense_Mutation_p.R129*	NM_000183	NP_000174	P55084	ECHB_HUMAN	mitochondrial trifunctional protein, beta	203					fatty acid beta-oxidation	mitochondrial nucleoid	3-hydroxyacyl-CoA dehydrogenase activity|acetyl-CoA C-acyltransferase activity|enoyl-CoA hydratase activity|protein binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTCTAAATTCCGATTTAATTT	0.438													16	44					0	0	0.007413	0	0
OTOF	9381	broad.mit.edu	37	2	26702454	26702454	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:26702454C>T	uc002rhk.2	-	17	2107	c.1980G>A	c.(1978-1980)GGG>GGA	p.G660G	OTOF_uc002rhh.2_5'Flank|OTOF_uc002rhi.2_5'Flank|OTOF_uc002rhj.2_5'Flank	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	660	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTTCCTCATCCCCCGGCTCCT	0.637													11	25					0	0	0.000978	0	0
AGBL5	60509	broad.mit.edu	37	2	27278857	27278858	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:27278857_27278858CC>TT	uc002rie.2	+	7	1433_1434	c.1216_1217CC>TT	c.(1216-1218)CCA>TTA	p.P406L	AGBL5_uc002ric.2_Missense_Mutation_p.P406L|AGBL5_uc002rid.2_Missense_Mutation_p.P406L|AGBL5_uc002rif.2_RNA	NM_021831	NP_068603	Q8NDL9	CBPC5_HUMAN	ATP/GTP binding protein-like 5 isoform 1	406					protein branching point deglutamylation|proteolysis	cytosol|nucleus	metallocarboxypeptidase activity|tubulin binding|zinc ion binding			ovary(1)|breast(1)	2	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GTGGATTATGCCACAACAGTCT	0.52													26	83					0	0	0.004672	0	0
RASGRP3	25780	broad.mit.edu	37	2	33783992	33783992	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:33783992G>A	uc002rox.2	+	18	2586	c.1959G>A	c.(1957-1959)TGG>TGA	p.W653*	RASGRP3_uc010ync.1_Nonsense_Mutation_p.W653*|RASGRP3_uc002roy.2_Nonsense_Mutation_p.W652*	NM_170672	NP_733772	Q8IV61	GRP3_HUMAN	RAS guanyl releasing protein 3 (calcium and	653					MAPKKK cascade|small GTPase mediated signal transduction	integral to plasma membrane|intracellular	calcium ion binding|diacylglycerol binding|guanyl-nucleotide exchange factor activity|protein binding|Rap GTPase activator activity|signal transducer activity			lung(3)|ovary(1)|pancreas(1)	5	all_hematologic(175;0.115)					TTGCCAAATGGGAAAATGAGA	0.532													19	31					0	0	0.006122	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43919774	43919774	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:43919774A>C	uc010yny.1	+	4	391	c.308A>C	c.(307-309)CAA>CCA	p.Q103P	PLEKHH2_uc002rte.3_Missense_Mutation_p.Q103P|PLEKHH2_uc002rtf.3_Missense_Mutation_p.Q103P	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	103	Potential.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GACGTCATTCAAAACTTGGAA	0.338													74	146					0	0	0.003610	0	0
USP34	9736	broad.mit.edu	37	2	61493252	61493252	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:61493252C>T	uc002sbe.2	-	42	5506	c.5484G>A	c.(5482-5484)AAG>AAA	p.K1828K	USP34_uc002sbf.2_5'UTR	NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1828					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			GTTGTCGGTCCTTTAGACTTG	0.383													15	23					0	0	0.003163	0	0
ETAA1	54465	broad.mit.edu	37	2	67630890	67630890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:67630890C>T	uc002sdz.1	+	5	1215	c.1076C>T	c.(1075-1077)TCC>TTC	p.S359F		NM_019002	NP_061875	Q9NY74	ETAA1_HUMAN	ETAA16 protein	359						cytoplasm|nucleus				ovary(3)|large_intestine(1)	4						TGTGTGACTTCCTGTACTAAG	0.353													14	36					0	0	0.003163	0	0
ADD2	119	broad.mit.edu	37	2	70890603	70890603	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:70890603G>A	uc002sgz.2	-	16	2600	c.2135C>T	c.(2134-2136)CCC>CTC	p.P712L	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_3'UTR|ADD2_uc002sha.2_Missense_Mutation_p.P406L|ADD2_uc002sgx.2_3'UTR	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	712	Interaction with calmodulin (Potential).				actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						CAGGAAGGAGGGGGTTCGGAA	0.537													39	89					0	0	0.003610	0	0
DYSF	8291	broad.mit.edu	37	2	71730418	71730418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:71730418C>T	uc002sie.2	+	4	687	c.311C>T	c.(310-312)CCC>CTC	p.P104L	DYSF_uc010feg.2_Missense_Mutation_p.P104L|DYSF_uc010feh.2_Missense_Mutation_p.P104L|DYSF_uc002sig.3_Missense_Mutation_p.P104L|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P104L|DYSF_uc010fef.2_Missense_Mutation_p.P104L|DYSF_uc010fei.2_Missense_Mutation_p.P104L|DYSF_uc010fek.2_Missense_Mutation_p.P105L|DYSF_uc010fej.2_Missense_Mutation_p.P105L|DYSF_uc010fel.2_Missense_Mutation_p.P105L|DYSF_uc010feo.2_Missense_Mutation_p.P105L|DYSF_uc010fem.2_Missense_Mutation_p.P105L|DYSF_uc010fen.2_Missense_Mutation_p.P105L|DYSF_uc002sif.2_Missense_Mutation_p.P105L	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	104	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						TTCAATGCCCCCCTGCTGGAC	0.592													21	49					0	0	0.001523	0	0
SLC4A5	57835	broad.mit.edu	37	2	74479337	74479337	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:74479337C>T	uc002sko.1	-	11	1449	c.1447G>A	c.(1447-1449)GAA>AAA	p.E483K	SLC4A5_uc002skl.2_RNA|SLC4A5_uc002skn.2_Missense_Mutation_p.E483K|SLC4A5_uc010ffc.1_Missense_Mutation_p.E483K|SLC4A5_uc002skp.1_Missense_Mutation_p.E419K|SLC4A5_uc002sks.1_Missense_Mutation_p.E483K	NM_021196	NP_067019	Q9BY07	S4A5_HUMAN	sodium bicarbonate transporter 4 isoform a	483	Cytoplasmic (Potential).|Gly-rich.					apical plasma membrane|integral to membrane	inorganic anion exchanger activity|sodium:bicarbonate symporter activity			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	9						TCCCCGATTTCATGCATGGCT	0.453													31	15					0	0	0.002836	0	0
CTNNA2	1496	broad.mit.edu	37	2	80816453	80816453	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:80816453G>A	uc010ysh.1	+	14	2037	c.2032G>A	c.(2032-2034)GAG>AAG	p.E678K	CTNNA2_uc010yse.1_Missense_Mutation_p.E678K|CTNNA2_uc010ysf.1_Missense_Mutation_p.E678K|CTNNA2_uc010ysg.1_Missense_Mutation_p.E678K|CTNNA2_uc010ysi.1_Missense_Mutation_p.E310K|CTNNA2_uc010ysj.1_Missense_Mutation_p.E7K	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	678					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						ACTACCGCAGGAGGAGAAGGC	0.507													10	8					0	0	0.000673	0	0
Unknown	0	broad.mit.edu	37	2	89161525	89161525	+	RNA	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:89161525C>T	uc010ytr.1	-	195		c.8980G>A			uc002sti.1_5'Flank|uc002stj.1_RNA					Parts of antibodies, mostly variable regions.																		AAGCTCAACTCCCTTTTCGAG	0.463													5	6					0	0	0.000602	0	0
Unknown	0	broad.mit.edu	37	2	89292083	89292083	+	RNA	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:89292083G>A	uc010ytr.1	-	82		c.7123C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		AGGAGCTTAGGGGCTTTCCCT	0.502													18	26					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	2	96581911	96581911	+	RNA	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:96581911G>A	uc002sva.1	-	18		c.860C>T			uc002svc.1_RNA					Homo sapiens cDNA FLJ41632 fis, clone FCBBF1000297, highly  similar to Human protein immuno-reactive with anti-PTH polyclonal antibodies mRNA.																		GGTTTTTTCCGAGAAGACACT	0.343													10	8					0	0	0.001368	0	0
ARID5A	10865	broad.mit.edu	37	2	97215195	97215195	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:97215195G>A	uc002swe.2	+	3	358	c.258G>A	c.(256-258)CAG>CAA	p.Q86Q	ARID5A_uc010yuq.1_5'UTR|ARID5A_uc002swf.2_Intron|ARID5A_uc002swg.2_Intron	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	86	ARID.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						GCTTCAAGCAGAGTGCGTCCC	0.602													14	40					0	0	0.004007	0	0
TMEM131	23505	broad.mit.edu	37	2	98453576	98453576	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:98453576G>A	uc002syh.3	-	8	997	c.768C>T	c.(766-768)CTC>CTT	p.L256L	TMEM131_uc010yvg.1_RNA	NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	256						integral to membrane				ovary(4)|central_nervous_system(2)	6						GACCCGTTGGGAGTTCTAGGT	0.438													13	41					0	0	0.001855	0	0
EIF5B	9669	broad.mit.edu	37	2	100010788	100010788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:100010788G>A	uc002tab.2	+	19	3123	c.2939G>A	c.(2938-2940)GGA>GAA	p.G980E	EIF5B_uc010yvq.1_5'UTR	NM_015904	NP_056988	O60841	IF2P_HUMAN	eukaryotic translation initiation factor 5B	980					regulation of translational initiation	cytosol	GTP binding|GTPase activity|protein binding|translation initiation factor activity			ovary(2)|pancreas(1)	3						GAAGAAAAAGGAGTCTATGTC	0.393													30	44					0	0	0.006320	0	0
NMS	129521	broad.mit.edu	37	2	101086967	101086967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:101086967C>T	uc002tan.1	+	1	24	c.17C>T	c.(16-18)CCC>CTC	p.P6L		NM_001011717	NP_001011717	Q5H8A3	NMS_HUMAN	neuromedin S precursor	6					neuropeptide signaling pathway|regulation of smooth muscle contraction	extracellular region				ovary(1)	1						CATCTTCGTCCCCAGTTCCCT	0.547													30	74					0	0	0.001786	0	0
IL1RL1	9173	broad.mit.edu	37	2	102964509	102964509	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:102964509C>T	uc002tbu.1	+	9	1346	c.1075C>T	c.(1075-1077)CTG>TTG	p.L359L	IL18R1_uc002tbw.3_Intron	NM_016232	NP_057316	Q01638	ILRL1_HUMAN	interleukin 1 receptor-like 1 isoform 1	359	Cytoplasmic (Potential).				innate immune response	integral to membrane	interleukin-1 receptor activity|receptor signaling protein activity			skin(2)|ovary(1)|central_nervous_system(1)	4						TGAGGCCACTCTGCTCTGGAG	0.373													6	16					0	0	0.003080	0	0
SLC9A4	389015	broad.mit.edu	37	2	103120161	103120161	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:103120161C>T	uc002tbz.3	+	3	1432	c.975C>T	c.(973-975)ATC>ATT	p.I325I		NM_001011552	NP_001011552	Q6AI14	SL9A4_HUMAN	solute carrier family 9 (sodium/hydrogen	325	Helical; Name=I/M7; (Potential).				regulation of pH	apical plasma membrane|basolateral plasma membrane|integral to membrane	sodium:hydrogen antiporter activity			skin(2)|central_nervous_system(1)	3						TCTCCGGCATCCTGGCGTGAG	0.433													19	44					0	0	0.001882	0	0
SLC9A2	6549	broad.mit.edu	37	2	103300793	103300793	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:103300793C>T	uc002tca.2	+	5	1565	c.1423C>T	c.(1423-1425)CTG>TTG	p.L475L		NM_003048	NP_003039	Q9UBY0	SL9A2_HUMAN	solute carrier family 9 (sodium/hydrogen	475	Helical; Name=M13; (Potential).					integral to membrane|plasma membrane	sodium:hydrogen antiporter activity			central_nervous_system(3)|skin(3)|breast(2)	8						TGTCTTCATTCTGGTAAGTAG	0.388													17	52					0	0	0.006122	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105912847	105912848	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:105912847_105912848CC>TT	uc002tcq.2	-	4	1087_1088	c.1003_1004GG>AA	c.(1003-1005)GGA>AAA	p.G335K	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.G105K|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.G335K	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	335					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						CCTCCGGGCTCCTTTTGCTAAA	0.386													20	64					0	0	0.004672	0	0
SLC5A7	60482	broad.mit.edu	37	2	108626916	108626916	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:108626916A>C	uc002tdv.2	+	9	1618	c.1342A>C	c.(1342-1344)ACT>CCT	p.T448P	SLC5A7_uc010ywm.1_Missense_Mutation_p.T201P|SLC5A7_uc010fjj.2_Missense_Mutation_p.T448P|SLC5A7_uc010ywn.1_Missense_Mutation_p.T335P	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	448	Helical; (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	CCTGAGAATAACTGGAGGGGA	0.438													26	31					0	0	0.007291	0	0
SLC5A7	60482	broad.mit.edu	37	2	108627290	108627290	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:108627290G>A	uc002tdv.2	+	9	1992	c.1716G>A	c.(1714-1716)GGG>GGA	p.G572G	SLC5A7_uc010ywm.1_Silent_p.G325G|SLC5A7_uc010fjj.2_Silent_p.G572G|SLC5A7_uc010ywn.1_Silent_p.G459G	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	572	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	GTCCAGAAGGGTCTGGGACTG	0.433													8	14					0	0	0.004482	0	0
EDAR	10913	broad.mit.edu	37	2	109522810	109522810	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:109522810C>T	uc002teq.3	-	11	1409	c.978G>A	c.(976-978)AGG>AGA	p.R326R	EDAR_uc010fjn.2_Silent_p.R358R|EDAR_uc010yws.1_Silent_p.R358R	NM_022336	NP_071731	Q9UNE0	EDAR_HUMAN	ectodysplasin A receptor precursor	326	Cytoplasmic (Potential).				apoptosis|cell differentiation	integral to membrane	protein binding|transmembrane receptor activity			skin(1)	1						GGATCTTTTTCCTCCGGCTTT	0.507													7	41					0	0	0.003080	0	0
ACOXL	55289	broad.mit.edu	37	2	111556243	111556243	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:111556243C>T	uc002tgr.3	+	6	626	c.402C>T	c.(400-402)GCC>GCT	p.A134A	ACOXL_uc010fkc.2_Silent_p.A134A|ACOXL_uc010yxk.1_Silent_p.A134A	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	134					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						TTGGAAATGCCATGTACGGGA	0.413													22	38					0	0	0.002780	0	0
BCL2L11	10018	broad.mit.edu	37	2	111881509	111881509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:111881509C>T	uc002tgv.1	+	2	475	c.187C>T	c.(187-189)CCG>TCG	p.P63S	BCL2L11_uc002tgt.1_Intron|BCL2L11_uc002tgu.1_Intron|BCL2L11_uc002tgw.1_Intron|BCL2L11_uc002tgx.1_Intron|BCL2L11_uc010fkd.1_Intron|BCL2L11_uc002tgy.1_Intron|BCL2L11_uc002tgz.1_Intron|BCL2L11_uc010fke.1_Intron|BCL2L11_uc002tha.1_Missense_Mutation_p.P63S|BCL2L11_uc002thb.1_Intron|BCL2L11_uc002thc.1_Intron|BCL2L11_uc002thd.1_Intron	NM_138621	NP_619527	O43521	B2L11_HUMAN	BCL2-like 11 isoform 1	63					activation of pro-apoptotic gene products|induction of apoptosis by extracellular signals|induction of apoptosis by intracellular signals|nerve growth factor receptor signaling pathway|positive regulation of protein homooligomerization|positive regulation of release of cytochrome c from mitochondria	cytosol|endomembrane system|mitochondrial outer membrane|plasma membrane	protein binding|protein binding				0						CCCTCAGGGCCCGCTGGCCCC	0.612													11	23					0	0	0.000673	0	0
IL1F8	27177	broad.mit.edu	37	2	113783693	113783693	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:113783693C>T	uc002tiq.1	-	5	482	c.378G>A	c.(376-378)TGG>TGA	p.W126*		NM_014438	NP_055253	Q9NZH7	IL36B_HUMAN	interleukin 1 family, member 8 isoform 1	126					immune response	extracellular space	cytokine activity|interleukin-1 receptor binding			ovary(1)	1						ctcctattccccattggtcaa	0													6	14					0	0	0.001168	0	0
PSD4	23550	broad.mit.edu	37	2	113950646	113950646	+	Silent	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:113950646G>T	uc002tjc.2	+	7	2043	c.1860G>T	c.(1858-1860)GTG>GTT	p.V620V	PSD4_uc002tjd.2_Silent_p.V241V|PSD4_uc002tje.2_Silent_p.V591V|PSD4_uc002tjf.2_Silent_p.V241V	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	620	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						GCAGGGCTGTGGCTGAGGAGT	0.627													7	27					0.000157383	0.000190073	0.003080	1	0
EPB41L5	57669	broad.mit.edu	37	2	120858317	120858317	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:120858317T>G	uc002tmg.2	+	16	1390	c.1264T>G	c.(1264-1266)TCC>GCC	p.S422A	EPB41L5_uc010flk.2_Missense_Mutation_p.S422A|EPB41L5_uc010fll.2_Missense_Mutation_p.S422A|EPB41L5_uc002tmh.3_Missense_Mutation_p.S422A|EPB41L5_uc010flm.2_Missense_Mutation_p.S226A	NM_020909	NP_065960	Q9HCM4	E41L5_HUMAN	erythrocyte membrane protein band 4.1 like 5	422						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding			ovary(1)	1						TCCTTccatttcctctgctcc	0.318													8	9					0	0	0.004482	0	0
GLI2	2736	broad.mit.edu	37	2	121747777	121747777	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:121747777C>T	uc010flp.2	+	13	4317	c.4287C>T	c.(4285-4287)CCC>CCT	p.P1429P	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Silent_p.P1101P|GLI2_uc002tmu.3_Silent_p.P1084P	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1429					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CGGTGCCTCCCCAGCCGCCTC	0.652													13	24					0	0	0.003163	0	0
CLASP1	23332	broad.mit.edu	37	2	122122776	122122776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:122122776G>A	uc002tnc.2	-	35	4361	c.3971C>T	c.(3970-3972)GCC>GTC	p.A1324V	CLASP1_uc010yyv.1_Missense_Mutation_p.A370V|CLASP1_uc002tmz.2_Missense_Mutation_p.A409V|CLASP1_uc002tna.2_Missense_Mutation_p.A370V|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.A1265V|CLASP1_uc010yza.1_Missense_Mutation_p.A1257V|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Missense_Mutation_p.A160V|CLASP1_uc002tnf.2_Missense_Mutation_p.A226V	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1324	Localization to kinetochores.|Interaction with PHLDB2 and RSN.|Potential.|Interaction with CLIP2 (By similarity).				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					CTCCAGCAGGGCTCCCTTCCG	0.572													6	9					0	0	0.001984	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125192172	125192172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:125192172G>A	uc002tno.2	+	5	1005	c.641G>A	c.(640-642)GGA>GAA	p.G214E	CNTNAP5_uc010flu.2_Missense_Mutation_p.G214E	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	214	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		AGCATGCAAGGAGATGGGGTC	0.512													14	30					0	0	0.002450	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125204409	125204409	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:125204409G>A	uc002tno.2	+	6	1177	c.813G>A	c.(811-813)TCG>TCA	p.S271S	CNTNAP5_uc010flu.2_Silent_p.S271S	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	271	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		ACTGGCACTCGGTCCTCATTG	0.612													11	27					0	0	0.000978	0	0
SAP130	79595	broad.mit.edu	37	2	128747283	128747283	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:128747283G>A	uc002tpp.2	-	13	1845	c.1713C>T	c.(1711-1713)ATC>ATT	p.I571I	SAP130_uc002tpn.2_Silent_p.I332I|SAP130_uc002tpo.2_Silent_p.I316I|SAP130_uc010fmd.2_Silent_p.I571I|SAP130_uc002tpq.1_Silent_p.I544I	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	571					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		GGGCCGGCTGGATACCCTGGG	0.567													24	34					0	0	0.004656	0	0
GPR148	344561	broad.mit.edu	37	2	131487345	131487345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:131487345G>A	uc002trv.1	+	1	623	c.621G>A	c.(619-621)ATG>ATA	p.M207I		NM_207364	NP_997247	Q8TDV2	GP148_HUMAN	G protein-coupled receptor 148	207	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1	Colorectal(110;0.1)					CACCAAGCATGGGCACCCAGC	0.552													23	59					0	0	0.002780	0	0
NCKAP5	344148	broad.mit.edu	37	2	133489377	133489377	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:133489377G>A	uc002ttp.2	-	17	5750	c.5376C>T	c.(5374-5376)TCC>TCT	p.S1792S	NCKAP5_uc002ttq.2_Silent_p.S473S	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1792							protein binding				0						TGATGGGGTCGGATGTGGAAT	0.547													25	37					0	0	0.005443	0	0
DARS	1615	broad.mit.edu	37	2	136691503	136691503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:136691503G>A	uc002tux.1	-	6	665	c.481C>T	c.(481-483)CGG>TGG	p.R161W	DARS_uc010fnj.1_Missense_Mutation_p.R61W	NM_001349	NP_001340	P14868	SYDC_HUMAN	aspartyl-tRNA synthetase	161					aspartyl-tRNA aminoacylation|protein complex assembly	cytosol|nuclear membrane|plasma membrane|soluble fraction	aminoacylase activity|aspartate-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.168)	L-Aspartic Acid(DB00128)	GCCTCAGGCCGAACAGCATCA	0.388													9	26					0	0	0.000978	0	0
THSD7B	80731	broad.mit.edu	37	2	138413140	138413140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:138413140C>T	uc002tva.1	+	21	3928	c.3928C>T	c.(3928-3930)CAT>TAT	p.H1310Y	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TTCAATATCTCATGCAGCTGG	0.512													6	6					0	0	0.003080	0	0
LRP1B	53353	broad.mit.edu	37	2	141032011	141032011	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:141032011C>T	uc002tvj.1	-	85	14096	c.13124G>A	c.(13123-13125)AGT>AAT	p.S4375N		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4375	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TATATCTTCACTGTCTTTATT	0.383										TSP Lung(27;0.18)			10	24					0	0	0.000978	0	0
LRP1B	53353	broad.mit.edu	37	2	141108405	141108405	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:141108405G>A	uc002tvj.1	-	77	12825	c.11853C>T	c.(11851-11853)ATC>ATT	p.I3951I		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3951	Extracellular (Potential).|LDL-receptor class B 33.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		CTCTGCCATGGATCCTTTTGT	0.343										TSP Lung(27;0.18)			9	28					0	0	0.004482	0	0
LRP1B	53353	broad.mit.edu	37	2	141625795	141625795	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:141625795G>A	uc002tvj.1	-	26	5179	c.4207C>T	c.(4207-4209)CGC>TGC	p.R1403C	LRP1B_uc010fnl.1_Missense_Mutation_p.R585C	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	1403	Extracellular (Potential).|LDL-receptor class B 11.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GATTCAATGCGAGGAAAATTT	0.323										TSP Lung(27;0.18)			20	26					0	0	0.007413	0	0
FMNL2	114793	broad.mit.edu	37	2	153417498	153417498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:153417498C>T	uc002tye.2	+	6	912	c.545C>T	c.(544-546)CCC>CTC	p.P182L		NM_052905	NP_443137	Q96PY5	FMNL2_HUMAN	formin-like 2	182	GBD/FH3.				actin cytoskeleton organization	cytoplasm	actin binding|Rho GTPase binding			central_nervous_system(2)|ovary(1)	3						AGCAACCTGCCCTCACCTGTG	0.542													3	5					0	0	0.000602	0	0
GALNT13	114805	broad.mit.edu	37	2	155158006	155158006	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:155158006C>T	uc002tyr.3	+	9	1627	c.1060C>T	c.(1060-1062)CCT>TCT	p.P354S	GALNT13_uc002tyt.3_Missense_Mutation_p.P354S|GALNT13_uc010foc.1_Missense_Mutation_p.P173S|GALNT13_uc010fod.2_Missense_Mutation_p.P107S	NM_052917	NP_443149	Q8IUC8	GLT13_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	354	Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						ATACACTTTTCCTGGTGGCAC	0.438													51	88					0	0	0.003610	0	0
KCNJ3	3760	broad.mit.edu	37	2	155555424	155555424	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:155555424T>C	uc002tyv.1	+	1	332	c.137T>C	c.(136-138)TTC>TCC	p.F46S	KCNJ3_uc010zce.1_Missense_Mutation_p.F46S	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	46	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	CGGCAGCGGTTCGTGGACAAG	0.642													10	26					0	0	0.000978	0	0
NR4A2	4929	broad.mit.edu	37	2	157186237	157186237	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:157186237C>T	uc002tyz.3	-	3	884	c.462G>A	c.(460-462)CAG>CAA	p.Q154Q	NR4A2_uc002tyx.3_Silent_p.Q91Q|NR4A2_uc010zcf.1_Silent_p.Q154Q|NR4A2_uc010zcg.1_5'Flank	NM_006186	NP_006177	P43354	NR4A2_HUMAN	nuclear receptor subfamily 4, group A, member 2	154	Pro-rich.				cellular response to extracellular stimulus|dopaminergic neuron differentiation|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to protein stimulus	nucleoplasm	sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|zinc ion binding			ovary(3)	3						CCACGTAGTTCTGGTGGAAGT	0.632													48	77					0	0	0.003214	0	0
ERMN	57471	broad.mit.edu	37	2	158178034	158178034	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:158178034G>A	uc002tzh.2	-	3	866	c.604C>T	c.(604-606)CGA>TGA	p.R202*	ERMN_uc010zcj.1_Nonsense_Mutation_p.R96*|ERMN_uc010zck.1_Nonsense_Mutation_p.R182*|ERMN_uc002tzi.2_Nonsense_Mutation_p.R215*	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	202						cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						TCTATCACTCGAACTtcatct	0.323													29	52					0	0	0.006320	0	0
BAZ2B	29994	broad.mit.edu	37	2	160206705	160206705	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:160206705G>A	uc002uao.2	-	28	4729	c.4377C>T	c.(4375-4377)TTC>TTT	p.F1459F	BAZ2B_uc002uap.2_Silent_p.F1423F	NM_013450	NP_038478	Q9UIF8	BAZ2B_HUMAN	bromodomain adjacent to zinc finger domain, 2B	1459					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|skin(1)	4						GTTTCTGAAGGAATAGATTTG	0.378													9	29					0	0	0.006214	0	0
PLA2R1	22925	broad.mit.edu	37	2	160869867	160869867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:160869867C>T	uc002ube.1	-	10	1778	c.1571G>A	c.(1570-1572)GGA>GAA	p.G524E	PLA2R1_uc010zcp.1_Missense_Mutation_p.G524E|PLA2R1_uc002ubf.2_Missense_Mutation_p.G524E	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	524	Extracellular (Potential).|C-type lectin 3.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						GTAACAGAATCCACCATGTCT	0.368													10	17					0	0	0.000978	0	0
COBLL1	22837	broad.mit.edu	37	2	165551322	165551322	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:165551322G>A	uc010zcw.1	-	15	3019	c.2895C>T	c.(2893-2895)GCC>GCT	p.A965A	COBLL1_uc002ucp.2_Silent_p.A898A|COBLL1_uc002ucq.2_Silent_p.A860A|COBLL1_uc010zcx.1_Silent_p.A906A|COBLL1_uc002ucn.2_Silent_p.A326A|COBLL1_uc002uco.2_Silent_p.A629A	NM_014900	NP_055715	Q53SF7	COBL1_HUMAN	COBL-like 1	936										ovary(2)|pancreas(1)	3						GTTTGGCCTGGGCATTTGAAG	0.433													18	26					0	0	0.006122	0	0
SCN9A	6335	broad.mit.edu	37	2	167060887	167060887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:167060887G>A	uc010fpl.2	-	25	4794	c.4453C>T	c.(4453-4455)CCA>TCA	p.P1485S	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1496						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CGAGGAATTGGCTTTTGTGGC	0.313													23	25					0	0	0.003330	0	0
SCN7A	6332	broad.mit.edu	37	2	167328867	167328867	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:167328867C>T	uc002udu.1	-	5	659	c.532G>A	c.(532-534)GAT>AAT	p.D178N	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	178					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TTCCATGGATCACCGAGGAAG	0.353													8	12					0	0	0.003080	0	0
XIRP2	129446	broad.mit.edu	37	2	168105004	168105004	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:168105004C>T	uc002udx.2	+	8	7120	c.7102C>T	c.(7102-7104)CCT>TCT	p.P2368S	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.P2193S|XIRP2_uc010fpq.2_Missense_Mutation_p.P2146S|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2193	Pro-rich.				actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						GCCGCCTCCTCCTCCTCCAAC	0.473													28	63					0	0	0.005443	0	0
LRP2	4036	broad.mit.edu	37	2	170011104	170011105	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:170011104_170011105GG>AA	uc002ues.2	-	66	12373_12374	c.12160_12161CC>TT	c.(12160-12162)CCT>TTT	p.P4054F		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	4054	Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TAGCAACAAAGGAGAGCTACCT	0.366													10	23					0	0	0.004672	0	0
LRP2	4036	broad.mit.edu	37	2	170135925	170135925	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:170135925T>C	uc002ues.2	-	12	1735	c.1522A>G	c.(1522-1524)AAC>GAC	p.N508D	LRP2_uc010zdf.1_Missense_Mutation_p.N508D	NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	508	LDL-receptor class B 2.|Extracellular (Potential).				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	TGCCCCAAGTTTTCAGTTATA	0.398													35	63					0	0	0.006230	0	0
GAD1	2571	broad.mit.edu	37	2	171678638	171678638	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:171678638A>G	uc002ugi.2	+	3	546	c.124A>G	c.(124-126)AAA>GAA	p.K42E	GAD1_uc002ugh.2_Missense_Mutation_p.K42E	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	42					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	ATGCACCAGAAAACTGGGGCT	0.647													6	7					0	0	0.003080	0	0
CHN1	1123	broad.mit.edu	37	2	175779842	175779842	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:175779842C>T	uc002uji.2	-	5	734	c.204G>A	c.(202-204)GGG>GGA	p.G68G	CHN1_uc010zeq.1_Silent_p.G68G|CHN1_uc002ujj.2_5'UTR	NM_001822	NP_001813	P15882	CHIN_HUMAN	chimerin (chimaerin) 1 isoform a	68	SH2.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.226)			TGAGGTAGCTCCCCTCAGCCA	0.473			T	TAF15	extraskeletal myxoid chondrosarcoma								8	14					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179395008	179395008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179395008C>T	uc010zfg.1	-	307	98854	c.98630G>A	c.(98629-98631)GGA>GAA	p.G32877E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G26572E|TTN_uc010zfi.1_Missense_Mutation_p.G26505E|TTN_uc010zfj.1_Missense_Mutation_p.G26380E|TTN_uc002umq.2_5'Flank	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33804							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCGGGGTTCTCCAGTAGCCTT	0.383													32	84					0	0	0.003755	0	0
TTN	7273	broad.mit.edu	37	2	179416693	179416693	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179416693C>A	uc010zfg.1	-	284	83454	c.83230G>T	c.(83230-83232)GTC>TTC	p.V27744F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.V21439F|TTN_uc010zfi.1_Missense_Mutation_p.V21372F|TTN_uc010zfj.1_Missense_Mutation_p.V21247F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	28671							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGCTTGAGACAAGTGGTTGG	0.438													33	62					4.65686e-17	5.70146e-17	0.003755	1	0
TTN	7273	broad.mit.edu	37	2	179422840	179422840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179422840C>T	uc010zfg.1	-	277	79761	c.79537G>A	c.(79537-79539)GAT>AAT	p.D26513N	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.D20208N|TTN_uc010zfi.1_Missense_Mutation_p.D20141N|TTN_uc010zfj.1_Missense_Mutation_p.D20016N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	27440							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GGGACACCATCTCTTGATAAG	0.423													29	49					0	0	0.006320	0	0
TTN	7273	broad.mit.edu	37	2	179440199	179440199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179440199G>A	uc010zfg.1	-	275	63180	c.62956C>T	c.(62956-62958)CCT>TCT	p.P20986S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P14681S|TTN_uc010zfi.1_Missense_Mutation_p.P14614S|TTN_uc010zfj.1_Missense_Mutation_p.P14489S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	21913							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTGGGCTTAGGCCATGCCAGG	0.507													63	119					0	0	0.003610	0	0
TTN	7273	broad.mit.edu	37	2	179453660	179453660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179453660C>T	uc010zfg.1	-	253	55312	c.55088G>A	c.(55087-55089)GGA>GAA	p.G18363E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G12058E|TTN_uc010zfi.1_Missense_Mutation_p.G11991E|TTN_uc010zfj.1_Missense_Mutation_p.G11866E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19290							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATTCATTTCCTTCTATGAG	0.378													6	12					0	0	0.001168	0	0
TTN	7273	broad.mit.edu	37	2	179477694	179477694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179477694G>A	uc010zfg.1	-	214	42274	c.42050C>T	c.(42049-42051)TCT>TTT	p.S14017F	uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.S7712F|TTN_uc010zfi.1_Missense_Mutation_p.S7645F|TTN_uc010zfj.1_Missense_Mutation_p.S7520F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14944							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATGACATAAGACTCAATCTT	0.483													11	27					0	0	0.000673	0	0
TTN	7273	broad.mit.edu	37	2	179481736	179481736	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179481736T>C	uc010zfg.1	-	205	40400	c.40176A>G	c.(40174-40176)GAA>GAG	p.E13392E	TTN_uc010zfh.1_Silent_p.E7087E|TTN_uc010zfi.1_Silent_p.E7020E|TTN_uc010zfj.1_Silent_p.E6895E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	14319							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCATTGTTGGTTCAACTACAA	0.393													37	85					0	0	0.006230	0	0
TTN	7273	broad.mit.edu	37	2	179571401	179571401	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179571401C>T	uc010zfg.1	-	99	25692	c.25468G>A	c.(25468-25470)GGG>AGG	p.G8490R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G5151R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9417							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTCCACTTCCCTTTTGTCCAT	0.408													43	81					0	0	0.002852	0	0
TTN	7273	broad.mit.edu	37	2	179582901	179582901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179582901C>T	uc010zfg.1	-	83	21324	c.21100G>A	c.(21100-21102)GGA>AGA	p.G7034R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3695R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7961							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCAGGTTCTCCAATGACTGCT	0.408													20	16					0	0	0.001216	0	0
TTN	7273	broad.mit.edu	37	2	179604720	179604720	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179604720G>A	uc010zfh.1	-	46	12951	c.12727C>T	c.(12727-12729)CTT>TTT	p.L4243F	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.L4176F|TTN_uc010zfj.1_Missense_Mutation_p.L4051F|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	4171							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGAGAAAAGACCTGGCTGC	0.478													29	44					0	0	0.007291	0	0
TTN	7273	broad.mit.edu	37	2	179605281	179605281	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179605281T>C	uc010zfh.1	-	46	12390	c.12166A>G	c.(12166-12168)ACC>GCC	p.T4056A	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.T3989A|TTN_uc010zfj.1_Missense_Mutation_p.T3864A|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCCACAGAGGTTAGATAAGAA	0.393													19	33					0	0	0.001216	0	0
TTN	7273	broad.mit.edu	37	2	179614760	179614760	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179614760C>A	uc002unb.2	-	46	12591	c.12367G>T	c.(12367-12369)GTG>TTG	p.V4123L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTTGAAACACTTCTTTAGAC	0.393													18	25					1.55795e-14	1.90191e-14	0.001882	1	0
TTN	7273	broad.mit.edu	37	2	179634502	179634502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:179634502G>A	uc010zfg.1	-	37	9030	c.8806C>T	c.(8806-8808)CAT>TAT	p.H2936Y	TTN_uc010zfh.1_Missense_Mutation_p.H2890Y|TTN_uc010zfi.1_Missense_Mutation_p.H2890Y|TTN_uc010zfj.1_Missense_Mutation_p.H2890Y|TTN_uc002unb.2_Missense_Mutation_p.H2936Y	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2936							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCAGCTGATGGAGTTTTCCC	0.478													49	110					0	0	0.003610	0	0
ZNF804A	91752	broad.mit.edu	37	2	185803578	185803578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:185803578G>A	uc002uph.2	+	4	4049	c.3455G>A	c.(3454-3456)GGA>GAA	p.G1152E		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	1152						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GGACCAGTAGGACCGAGGCTT	0.493													30	62					0	0	0.002096	0	0
ITGAV	3685	broad.mit.edu	37	2	187511431	187511431	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:187511431C>T	uc002upq.2	+	13	1454	c.1178C>T	c.(1177-1179)CCA>CTA	p.P393L	ITGAV_uc010frs.2_Missense_Mutation_p.P357L|ITGAV_uc010zfv.1_Missense_Mutation_p.P347L	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	393	FG-GAP 6.|Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		ATTGCTGCTCCATATGGGGGT	0.269													12	17					0	0	0.001855	0	0
WDR75	84128	broad.mit.edu	37	2	190323591	190323591	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:190323591C>T	uc002uql.1	+	7	742	c.682C>T	c.(682-684)CGT>TGT	p.R228C	WDR75_uc002uqm.1_Missense_Mutation_p.R164C|WDR75_uc002uqn.1_Missense_Mutation_p.R6C|WDR75_uc002uqo.1_Missense_Mutation_p.R6C	NM_032168	NP_115544	Q8IWA0	WDR75_HUMAN	WD repeat domain 75	228	WD 3.					nucleolus				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.00105)|Epithelial(96;0.0129)|all cancers(119;0.0456)			TGGCAAAATTCGTCTTTGGTC	0.418													19	40					0	0	0.002299	0	0
STAT1	6772	broad.mit.edu	37	2	191851617	191851617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:191851617G>A	uc002usj.2	-	14	1572	c.1184C>T	c.(1183-1185)TCC>TTC	p.S395F	STAT1_uc010fse.1_Missense_Mutation_p.S395F|STAT1_uc002usk.2_Missense_Mutation_p.S395F|STAT1_uc002usl.2_Missense_Mutation_p.S397F|STAT1_uc010fsf.1_Missense_Mutation_p.S207F	NM_007315	NP_009330	P42224	STAT1_HUMAN	signal transducer and activator of transcription	395					activation of caspase activity|I-kappaB kinase/NF-kappaB cascade|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway|tyrosine phosphorylation of STAT protein	cytosol|nucleolus|nucleoplasm	calcium ion binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding|RNA polymerase II core promoter sequence-specific DNA binding transcription factor activity|signal transducer activity			lung(3)|breast(3)|central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.00434)|Epithelial(96;0.0555)|all cancers(119;0.141)		Fludarabine(DB01073)	GCCATTGGTGGACTCCTCCAT	0.423													60	100					0	0	0.003610	0	0
DNAH7	56171	broad.mit.edu	37	2	196753008	196753008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:196753008C>T	uc002utj.3	-	33	5481	c.5380G>A	c.(5380-5382)GTT>ATT	p.V1794I		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1794	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						ATAAATTCAACCGAAACAGGG	0.328													6	13					0	0	0.003080	0	0
DNAH7	56171	broad.mit.edu	37	2	196834767	196834767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:196834767C>T	uc002utj.3	-	17	2211	c.2110G>A	c.(2110-2112)GAA>AAA	p.E704K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	704	Stem (By similarity).|Potential.				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TAAAATTCTTCTGATTGCTTA	0.343													16	48					0	0	0.004990	0	0
HECW2	57520	broad.mit.edu	37	2	197184260	197184260	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:197184260G>A	uc002utm.1	-	9	1537	c.1354C>T	c.(1354-1356)CCC>TCC	p.P452S	HECW2_uc002utl.1_Missense_Mutation_p.P96S	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	452					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						GTGTCAGTGGGAAAACTACTC	0.507													5	16					0	0	0.001984	0	0
HECW2	57520	broad.mit.edu	37	2	197297971	197297971	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:197297971G>A	uc002utm.1	-	2	360	c.177C>T	c.(175-177)TCC>TCT	p.S59S		NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	59					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CAGTTAAGCTGGAGCGGCTCT	0.572													15	38					0	0	0.006122	0	0
PLCL1	5334	broad.mit.edu	37	2	198948626	198948626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:198948626C>T	uc010fsp.2	+	2	676	c.385C>T	c.(385-387)CGC>TGC	p.R129C	PLCL1_uc002uuv.3_Missense_Mutation_p.R50C	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	129	PH.|Interaction with PPP1C.				intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	GCCAAATTCTCGCATTTACAA	0.453													8	21					0	0	0.004482	0	0
RAPH1	65059	broad.mit.edu	37	2	204304926	204304926	+	Missense_Mutation	SNP	G	A	A	rs147887694		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:204304926G>A	uc002vad.2	-	14	3212	c.2987C>T	c.(2986-2988)TCG>TTG	p.S996L		NM_213589	NP_998754	Q70E73	RAPH1_HUMAN	Ras association and pleckstrin homology domains	996					cell-matrix adhesion|signal transduction	cytoplasm|cytoskeleton|filopodium|lamellipodium|nucleus|plasma membrane				ovary(3)|breast(3)|central_nervous_system(2)|lung(1)|skin(1)	10						ACTGTCCACCGAGGGTCTCTT	0.597													26	59					0	0	0.007291	0	0
C2orf67	151050	broad.mit.edu	37	2	211018925	211018925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:211018925G>A	uc002vds.2	-	2	590	c.382C>T	c.(382-384)CAT>TAT	p.H128Y	C2orf67_uc002vdt.2_Missense_Mutation_p.H128Y|C2orf67_uc002vdw.2_Missense_Mutation_p.H128Y|C2orf67_uc002vdy.1_Missense_Mutation_p.H128Y|C2orf67_uc002vdv.2_Missense_Mutation_p.H128Y|C2orf67_uc002vdx.1_Missense_Mutation_p.H128Y	NM_152519	NP_689732	A0AUZ9	CB067_HUMAN	hypothetical protein LOC151050	128										ovary(3)	3		Renal(323;0.202)		Epithelial(149;0.00435)|Lung(261;0.0529)|LUSC - Lung squamous cell carcinoma(261;0.0551)|all cancers(144;0.0696)		TCTTCAGAATGAGAAAGACAG	0.363													13	28					0	0	0.004007	0	0
CPS1	1373	broad.mit.edu	37	2	211452803	211452803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:211452803G>A	uc002vee.3	+	7	775	c.643G>A	c.(643-645)GGA>AGA	p.G215R	CPS1_uc010fur.2_Missense_Mutation_p.G221R	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	215	Anthranilate phosphoribosyltransferase homolog.				carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GTACGGCAAAGGAAACCCCAC	0.413													22	67					0	0	0.005443	0	0
BARD1	580	broad.mit.edu	37	2	215645294	215645294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:215645294G>A	uc002veu.2	-	4	1439	c.1304C>T	c.(1303-1305)GCT>GTT	p.A435V	BARD1_uc010zjm.1_Missense_Mutation_p.A291V	NM_000465	NP_000456	Q99728	BARD1_HUMAN	BRCA1 associated RING domain 1	435	ANK 1.				cell cycle arrest|DNA repair|negative regulation of apoptosis|negative regulation of mRNA 3'-end processing|negative regulation of protein export from nucleus|positive regulation of apoptosis|positive regulation of protein catabolic process|protein K6-linked ubiquitination|regulation of phosphorylation|tissue homeostasis	BRCA1-A complex|BRCA1-BARD1 complex|cytoplasm	kinase binding|protein heterodimerization activity|protein homodimerization activity|RNA binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2		Renal(323;0.0243)		Epithelial(149;3.2e-06)|all cancers(144;0.000461)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		CTTAATAGAAGCAATATGGAG	0.393									Neuroblastoma_Familial_Clustering_of|Congenital_Central_Hypoventilation_Syndrome				8	7					0	0	0.006214	0	0
FN1	2335	broad.mit.edu	37	2	216283967	216283967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:216283967G>A	uc002vfa.2	-	12	2083	c.1817C>T	c.(1816-1818)CCA>CTA	p.P606L	FN1_uc002vfb.2_Missense_Mutation_p.P606L|FN1_uc002vfc.2_Missense_Mutation_p.P606L|FN1_uc002vfd.2_Missense_Mutation_p.P606L|FN1_uc002vfe.2_Missense_Mutation_p.P606L|FN1_uc002vff.2_Missense_Mutation_p.P606L|FN1_uc002vfg.2_Missense_Mutation_p.P606L|FN1_uc002vfh.2_Missense_Mutation_p.P606L|FN1_uc002vfi.2_Missense_Mutation_p.P606L|FN1_uc002vfj.2_Missense_Mutation_p.P606L|FN1_uc002vfl.2_Missense_Mutation_p.P606L	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	606	Collagen-binding.				acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	CTACTTACTTGGATAGGTCTG	0.473													13	24					0	0	0.003163	0	0
ZNF142	7701	broad.mit.edu	37	2	219508735	219508735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:219508735G>A	uc002vin.2	-	8	2940	c.2504C>T	c.(2503-2505)GCC>GTC	p.A835V	ZNF142_uc002vil.2_Missense_Mutation_p.A796V|ZNF142_uc010fvt.2_Missense_Mutation_p.A672V|ZNF142_uc002vim.2_Missense_Mutation_p.A672V	NM_001105537	NP_001099007	P52746	ZN142_HUMAN	zinc finger protein 142	835					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)|skin(1)	4		Renal(207;0.0474)		Epithelial(149;5.21e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)		GCAGCGGAAGGCTCGCCCCTC	0.607													29	77					0	0	0.006320	0	0
STK36	27148	broad.mit.edu	37	2	219538446	219538446	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:219538446C>T	uc002viu.2	+	3	449	c.183C>T	c.(181-183)CCC>CCT	p.P61P	STK36_uc002viv.2_Silent_p.P61P|RNF25_uc002vit.2_5'Flank|RNF25_uc010fvw.2_5'Flank	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	61	Protein kinase.				cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		TGCGGCATCCCAACATTGTGC	0.498													15	19					0	0	0.004007	0	0
TTLL4	9654	broad.mit.edu	37	2	219602993	219602993	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:219602993C>T	uc002viy.2	+	3	964	c.594C>T	c.(592-594)GCC>GCT	p.A198A	TTLL4_uc010zkl.1_Silent_p.A33A|TTLL4_uc010fvx.2_Silent_p.A198A	NM_014640	NP_055455	Q14679	TTLL4_HUMAN	tubulin tyrosine ligase-like family, member 4	198					protein polyglutamylation	cilium|microtubule basal body	ATP binding|tubulin binding|tubulin-tyrosine ligase activity			ovary(2)|skin(1)	3		Renal(207;0.0915)		Epithelial(149;5.03e-07)|all cancers(144;0.000106)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.0101)		AGAGCCTGGCCTCTGCCATCT	0.547													22	64					0	0	0.001882	0	0
ANKZF1	55139	broad.mit.edu	37	2	220097914	220097914	+	Splice_Site	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:220097914G>A	uc002vkg.2	+	6	845	c.671_splice	c.e6+1	p.G224_splice	ANKZF1_uc010zkv.1_Splice_Site_p.G168_splice|ANKZF1_uc010zkw.1_Splice_Site_p.G14_splice|ANKZF1_uc002vkh.2_Splice_Site_p.G14_splice|ANKZF1_uc002vki.2_Splice_Site_p.G224_splice|ANKZF1_uc002vkj.1_Splice_Site_p.G212_splice	NM_018089	NP_060559	Q9H8Y5	ANKZ1_HUMAN	ankyrin repeat and zinc finger domain containing							intracellular	zinc ion binding			ovary(2)	2		Renal(207;0.0474)		Epithelial(149;1.2e-06)|all cancers(144;0.000197)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		TATTTCAAGGGTGAGAGGGTG	0.547													35	72					0	0	0.003271	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882158	228882158	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:228882158C>T	uc002vpq.2	-	7	3459	c.3412G>A	c.(3412-3414)GAA>AAA	p.E1138K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1138K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E1138K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1138						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		CCTTCATTTTCCATCTGGTTC	0.537													9	17					0	0	0.006214	0	0
SP140L	93349	broad.mit.edu	37	2	231254709	231254709	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:231254709G>C	uc010fxm.1	+	11	1026	c.935G>C	c.(934-936)GGA>GCA	p.G312A	SP140L_uc010fxo.1_Intron	NM_138402	NP_612411	Q9H930	LY10L_HUMAN	SP140 nuclear body protein-like	312	SAND.					nucleus	DNA binding|metal ion binding			central_nervous_system(1)	1						GGGGTGAAGGGAATTTTACAT	0.398													10	27					0	0	0.001855	0	0
INPP5D	3635	broad.mit.edu	37	2	234072371	234072371	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:234072371A>C	uc010zmo.1	+	11	1412	c.1259A>C	c.(1258-1260)AAG>ACG	p.K420T	INPP5D_uc010zmp.1_Missense_Mutation_p.K419T	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	420					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		CCCCCTCCCAAGAAGATCACG	0.537													39	49					0	0	0.003610	0	0
INPP5D	3635	broad.mit.edu	37	2	234104085	234104085	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:234104085G>A	uc010zmo.1	+	23	2790	c.2637G>A	c.(2635-2637)AAG>AAA	p.K879K	INPP5D_uc010zmp.1_Silent_p.K878K	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	879					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GTGGGCCAAAGACCCTGAAGA	0.577													13	28					0	0	0.003163	0	0
SAG	6295	broad.mit.edu	37	2	234237135	234237135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:234237135G>A	uc002vuh.2	+	8	912	c.524G>A	c.(523-525)CGA>CAA	p.R175Q	SAG_uc010zmq.1_Missense_Mutation_p.R41Q	NM_000541	NP_000532	P10523	ARRS_HUMAN	S-arrestin	175					rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway		protein phosphatase inhibitor activity			ovary(1)	1		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.018)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.054)		Epithelial(121;2.86e-17)|BRCA - Breast invasive adenocarcinoma(100;0.00037)|LUSC - Lung squamous cell carcinoma(224;0.00608)|Lung(119;0.00714)|GBM - Glioblastoma multiforme(43;0.207)		AGCTCCGTGCGATTACTGATC	0.592													28	45					0	0	0.003755	0	0
USP40	55230	broad.mit.edu	37	2	234442328	234442328	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:234442328T>A	uc010zmr.1	-	10	1301	c.1301A>T	c.(1300-1302)CAA>CTA	p.Q434L	USP40_uc010zmt.1_Missense_Mutation_p.Q78L	NM_018218	NP_060688	Q9NVE5	UBP40_HUMAN	ubiquitin thioesterase 40	422					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		GTCATTCCTTTGGAAATCAGA	0.393													15	19					0	0	0.003163	0	0
USP40	55230	broad.mit.edu	37	2	234460057	234460057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:234460057G>A	uc010zmu.1	-	7	920	c.802C>T	c.(802-804)CCT>TCT	p.P268S	USP40_uc010zmr.1_Missense_Mutation_p.P280S|USP40_uc010zmt.1_5'Flank			Q9NVE5	UBP40_HUMAN	SubName: Full=cDNA FLJ56772, highly similar to Ubiquitin carboxyl-terminal hydrolase 40 (EC 3.1.2.15);	268					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity			ovary(1)|lung(1)|breast(1)	3		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0539)		Epithelial(121;1.71e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000407)|Lung(119;0.00277)|LUSC - Lung squamous cell carcinoma(224;0.00646)		ATCCGGAGAGGGAATGTATAA	0.338													7	13					0	0	0.004482	0	0
UGT1A4	54657	broad.mit.edu	37	2	234627950	234627950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:234627950G>A	uc002vux.2	+	1	513	c.484G>A	c.(484-486)GCT>ACT	p.A162T	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Intron|UGT1A9_uc002vus.2_Intron|UGT1A7_uc010zmx.1_Intron|UGT1A7_uc002vut.2_Intron|UGT1A6_uc002vuu.2_Intron|UGT1A6_uc010zmy.1_Intron|UGT1A6_uc002vuv.3_Intron|UGT1A5_uc010zmz.1_Intron|UGT1A5_uc002vuw.2_Intron|UGT1A4_uc010zna.1_Missense_Mutation_p.A162T	NM_007120	NP_009051	P22310	UD14_HUMAN	UDP glycosyltransferase 1 family, polypeptide A4	162					xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity			skin(1)	1		Breast(86;0.000765)|all_lung(227;0.00266)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0327)|Lung NSC(271;0.0456)|Lung SC(224;0.128)		Epithelial(121;3.49e-18)|BRCA - Breast invasive adenocarcinoma(100;0.000504)|Lung(119;0.0026)|LUSC - Lung squamous cell carcinoma(224;0.00624)	Imipramine(DB00458)|Lamotrigine(DB00555)|Paricalcitol(DB00910)|Trifluoperazine(DB00831)	GGCGGTGCTGGCTAAGTACCT	0.478													36	89					0	0	0.005524	0	0
AGAP1	116987	broad.mit.edu	37	2	236957790	236957790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:236957790G>A	uc002vvs.2	+	16	2574	c.1979G>A	c.(1978-1980)CGA>CAA	p.R660Q	AGAP1_uc002vvt.2_Missense_Mutation_p.R607Q	NM_001037131	NP_001032208	Q9UPQ3	AGAP1_HUMAN	centaurin, gamma 2 isoform 1	660	Arf-GAP.				protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytoplasm	ARF GTPase activator activity|GTP binding|zinc ion binding			ovary(2)|skin(1)	3						CACCTTTCCCGAGTCCGATCT	0.572													24	56					0	0	0.004656	0	0
COL6A3	1293	broad.mit.edu	37	2	238290009	238290009	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:238290009G>A	uc002vwl.2	-	5	1731	c.1446C>T	c.(1444-1446)ATC>ATT	p.I482I	COL6A3_uc002vwo.2_Silent_p.I276I|COL6A3_uc010znj.1_Silent_p.I75I|COL6A3_uc002vwq.2_Silent_p.I276I|COL6A3_uc002vwr.2_Silent_p.I75I|COL6A3_uc010znk.1_Silent_p.I482I	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	482	VWFA 3.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		CTGCCACCTGGATAAGATCCT	0.488													17	37					0	0	0.004990	0	0
ILKAP	80895	broad.mit.edu	37	2	239079622	239079623	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:239079622_239079623GG>AA	uc002vxv.2	-	11	1129_1130	c.999_1000CC>TT	c.(997-1002)ACCCCA>ACTTCA	p.P334S	ILKAP_uc010zns.1_Missense_Mutation_p.P266S|ILKAP_uc002vxw.2_Missense_Mutation_p.P214S	NM_030768	NP_110395	Q9H0C8	ILKAP_HUMAN	integrin-linked kinase-associated protein	334	PP2C-like.					cytoplasm|protein serine/threonine phosphatase complex	metal ion binding|protein binding			ovary(3)	3		Breast(86;7.61e-05)|Renal(207;0.00183)|Ovarian(221;0.0481)|all_lung(227;0.152)|all_hematologic(139;0.158)|Melanoma(123;0.203)|Hepatocellular(293;0.244)		Epithelial(121;5.49e-24)|OV - Ovarian serous cystadenocarcinoma(60;3.93e-12)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;6.82e-08)|BRCA - Breast invasive adenocarcinoma(100;0.00012)|Lung(119;0.00942)|LUSC - Lung squamous cell carcinoma(224;0.0163)		GCTTCTTCTGGGGTAAAGACCT	0.441													43	71					0	0	0.004672	0	0
ANKMY1	51281	broad.mit.edu	37	2	241465794	241465794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:241465794G>A	uc002vyz.1	-	5	984	c.755C>T	c.(754-756)CCC>CTC	p.P252L	ANKMY1_uc002vza.1_Intron|ANKMY1_uc010fzd.1_Missense_Mutation_p.P341L|ANKMY1_uc002vzb.1_Intron|ANKMY1_uc002vzc.1_Intron|ANKMY1_uc002vzd.1_Intron|ANKMY1_uc010fze.1_Intron|ANKMY1_uc002vze.2_Intron	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	252							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		GGGCCCACAGGGTGCAAAGCC	0.527													11	24					0	0	0.000978	0	0
RNPEPL1	57140	broad.mit.edu	37	2	241517032	241517032	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:241517032C>A	uc002vzi.2	+	11	1801	c.1208C>A	c.(1207-1209)ACC>AAC	p.T403N	RNPEPL1_uc010fzf.2_Missense_Mutation_p.T309N|RNPEPL1_uc002vzj.2_Missense_Mutation_p.T51N	NM_018226	NP_060696	Q9HAU8	RNPL1_HUMAN	arginyl aminopeptidase (aminopeptidase B)-like	403					leukotriene biosynthetic process|proteolysis		aminopeptidase activity|metallopeptidase activity|zinc ion binding			large_intestine(1)|skin(1)	2		all_epithelial(40;1.13e-11)|Breast(86;0.000169)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.204)|Melanoma(123;0.238)		Epithelial(32;3.05e-31)|all cancers(36;8.2e-29)|OV - Ovarian serous cystadenocarcinoma(60;8.55e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.12e-06)|Lung(119;0.00168)|Colorectal(34;0.005)|LUSC - Lung squamous cell carcinoma(224;0.00813)|COAD - Colon adenocarcinoma(134;0.0322)		CGCATGTACACCATCCCGCTG	0.687													7	23					1.12685e-05	1.36285e-05	0.004482	1	0
GPR35	2859	broad.mit.edu	37	2	241569905	241569905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:241569905G>A	uc002vzs.1	+	1	1111	c.536G>A	c.(535-537)GGA>GAA	p.G179E	GPR35_uc010fzh.1_Missense_Mutation_p.G210E|GPR35_uc010fzi.1_Missense_Mutation_p.G210E	NM_005301	NP_005292	Q9HC97	GPR35_HUMAN	G protein-coupled receptor 35	179	Helical; Name=5; (Potential).					integral to plasma membrane	G-protein coupled receptor activity			skin(2)|pancreas(1)	3		all_epithelial(40;7.49e-12)|Breast(86;0.000148)|Renal(207;0.00571)|Ovarian(221;0.104)|all_neural(83;0.107)|all_hematologic(139;0.182)|all_lung(227;0.186)|Melanoma(123;0.238)		Epithelial(32;5.29e-32)|all cancers(36;1.38e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.13e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;5.02e-06)|Lung(119;0.00163)|Colorectal(34;0.00463)|LUSC - Lung squamous cell carcinoma(224;0.008)|COAD - Colon adenocarcinoma(134;0.031)		CCGCTGCTGGGATTCTACCTG	0.667													12	29					0	0	0.001855	0	0
MTERFD2	130916	broad.mit.edu	37	2	242039099	242039099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:242039099G>A	uc002wan.1	-	1	812	c.319C>T	c.(319-321)CTT>TTT	p.L107F	MTERFD2_uc010zoj.1_Intron|MTERFD2_uc010zok.1_Missense_Mutation_p.L78F	NM_182501	NP_872307	Q7Z6M4	MTER2_HUMAN	MTERF domain containing 2	78										ovary(1)	1		all_cancers(19;4.67e-31)|all_epithelial(40;8.67e-13)|Breast(86;0.000141)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;2.47e-32)|all cancers(36;1.79e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-14)|Kidney(56;3.21e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;2.81e-06)|Lung(119;0.000509)|LUSC - Lung squamous cell carcinoma(224;0.00442)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0886)		TGCTTCTCAAGGAGGCACTGA	0.493													30	38					0	0	0.001512	0	0
TGM3	7053	broad.mit.edu	37	20	2312718	2312718	+	Silent	SNP	G	A	A	rs45594433	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:2312718G>A	uc002wfx.3	+	10	1501	c.1404G>A	c.(1402-1404)GCG>GCA	p.A468A		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	468		Cleavage; by CTSL.			cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	CATTTGCCGCGACGTCTTCAA	0.522													13	23					0	0	0.001855	0	0
PRNP	5621	broad.mit.edu	37	20	4680141	4680141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:4680141G>A	uc002wku.2	+	2	638	c.275G>A	c.(274-276)GGA>GAA	p.G92E	PRNP_uc002wkv.2_Missense_Mutation_p.G92E|PRNP_uc002wkw.2_Missense_Mutation_p.G92E|PRNP_uc002wkx.2_Missense_Mutation_p.G92E|PRNP_uc002wkt.1_Intron|PRNP_uc002wky.2_Missense_Mutation_p.G92E|PRNP_uc010gbe.1_Missense_Mutation_p.G92E	NM_001080122	NP_001073591	P04156	PRIO_HUMAN	prion protein preproprotein	92	Interaction with GRB2, ERI3 and SYN1 (By similarity).				axon guidance|cell cycle arrest|cellular copper ion homeostasis|metabolic process|negative regulation of activated T cell proliferation|negative regulation of calcineurin-NFAT signaling pathway|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-2 production|negative regulation of protein phosphorylation|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of T cell receptor signaling pathway|protein homooligomerization|response to oxidative stress	anchored to membrane|endoplasmic reticulum|extrinsic to membrane|Golgi apparatus|membrane raft|nucleus|plasma membrane	copper ion binding|identical protein binding|microtubule binding			central_nervous_system(1)	1					Tetracycline(DB00759)	TGGGGTCAAGGAGGTGGCACC	0.642													13	18					0	0	0.001368	0	0
HAO1	54363	broad.mit.edu	37	20	7895057	7895057	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:7895057G>A	uc002wmw.1	-	3	323	c.299C>T	c.(298-300)TCC>TTC	p.S100F	HAO1_uc010gbu.2_Missense_Mutation_p.S100F	NM_017545	NP_060015	Q9UJM8	HAOX1_HUMAN	hydroxyacid oxidase 1	100	FMN hydroxy acid dehydrogenase.				cellular nitrogen compound metabolic process|fatty acid alpha-oxidation|glycolate catabolic process|glyoxylate metabolic process	peroxisomal matrix	FMN binding|glycolate oxidase activity|glyoxylate oxidase activity			ovary(3)	3						CGTTCCCAGGGACTGACAGGC	0.502													12	15					0	0	0.002450	0	0
PLCB1	23236	broad.mit.edu	37	20	8713958	8713958	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:8713958C>T	uc002wnb.2	+	19	1965	c.1962C>T	c.(1960-1962)TTC>TTT	p.F654F	PLCB1_uc010zrb.1_Silent_p.F553F|PLCB1_uc002wna.2_Silent_p.F654F|PLCB1_uc002wnc.1_Silent_p.F553F|PLCB1_uc002wnd.1_Silent_p.F231F	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	654	PI-PLC Y-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						AGCCAGAGTTCATGAGGAGGC	0.423													20	36					0	0	0.001216	0	0
PLCB4	5332	broad.mit.edu	37	20	9351883	9351883	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:9351883G>A	uc002wnf.2	+	9	662	c.526G>A	c.(526-528)GGA>AGA	p.G176R	PLCB4_uc010gbw.1_Missense_Mutation_p.G176R|PLCB4_uc010gbx.2_Missense_Mutation_p.G176R|PLCB4_uc002wne.2_Missense_Mutation_p.G176R|PLCB4_uc002wnh.2_Missense_Mutation_p.G23R	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	176					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						ATTTGCATCGGGAAAAACAGA	0.358													18	54					0	0	0.001216	0	0
PLCB4	5332	broad.mit.edu	37	20	9388564	9388564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:9388564G>A	uc002wnf.2	+	20	1748	c.1612G>A	c.(1612-1614)GGC>AGC	p.G538S	PLCB4_uc010gbw.1_Missense_Mutation_p.G538S|PLCB4_uc010gbx.2_Missense_Mutation_p.G550S|PLCB4_uc002wne.2_Missense_Mutation_p.G538S|PLCB4_uc002wnh.2_Missense_Mutation_p.G385S	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	538					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GTGCTTGTAGGGCCTGGTCAC	0.408													23	46					0	0	0.005443	0	0
C20orf12	55184	broad.mit.edu	37	20	18396034	18396034	+	Silent	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:18396034G>T	uc010zsa.1	-	11	1280	c.1071C>A	c.(1069-1071)TCC>TCA	p.S357S	C20orf12_uc010zrz.1_5'Flank|C20orf12_uc002wqp.3_Intron|C20orf12_uc002wqr.3_RNA|C20orf12_uc002wqs.3_Silent_p.S224S|C20orf12_uc002wqq.3_Silent_p.S338S|C20orf12_uc002wqu.1_RNA|C20orf12_uc010gct.1_RNA	NM_001099407	NP_001092877	Q9NVP4	CT012_HUMAN	hypothetical protein LOC55184	165						intracellular	zinc ion binding			ovary(1)	1		Myeloproliferative disorder(85;0.0122)				ATCTGTAGCAGGAAATGGTCC	0.512													16	26					8.28177e-16	1.01248e-15	0.007413	1	0
FRG1B	284802	broad.mit.edu	37	20	29628283	29628283	+	Silent	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:29628283G>C	uc010ztl.1	+	3	227	c.195G>C	c.(193-195)GGG>GGC	p.G65G	FRG1B_uc002wvm.1_RNA|FRG1B_uc010ztj.1_RNA|FRG1B_uc010gdr.1_RNA|FRG1B_uc010ztk.1_Silent_p.G17G					Homo sapiens cDNA FLJ32537 fis, clone SMINT2000400, highly similar to Homo sapiens FRG1 mRNA.												0						ATGAAGCAGGGGACATAGAAG	0.378													5	34					0	0	0.001168	0	0
POFUT1	23509	broad.mit.edu	37	20	30816216	30816216	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:30816216C>T	uc002wxp.2	+	5	742	c.693C>T	c.(691-693)GTC>GTT	p.V231V	POFUT1_uc010ztt.1_Silent_p.V123V|POFUT1_uc010ztu.1_Silent_p.V20V	NM_015352	NP_056167	Q9H488	OFUT1_HUMAN	protein O-fucosyltransferase 1 isoform 1	231					fucose metabolic process|Notch signaling pathway|O-glycan processing|regulation of transcription, DNA-dependent	endoplasmic reticulum|membrane	peptide-O-fucosyltransferase activity			breast(1)	1			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CCCACCTTGTCCGGCCCTATG	0.552													11	22					0	0	0.000978	0	0
CPNE1	8904	broad.mit.edu	37	20	34220449	34220449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:34220449G>A	uc002xdf.2	-	5	662	c.299C>T	c.(298-300)TCC>TTC	p.S100F	CPNE1_uc002xdc.2_5'Flank|CPNE1_uc010zvj.1_Missense_Mutation_p.S105F|CPNE1_uc002xde.2_Missense_Mutation_p.S100F|CPNE1_uc002xdg.2_Missense_Mutation_p.S100F|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.S100F|CPNE1_uc002xdi.2_Missense_Mutation_p.S100F|CPNE1_uc002xdj.2_Missense_Mutation_p.S100F|CPNE1_uc002xdk.2_Missense_Mutation_p.S100F|CPNE1_uc002xdl.2_Missense_Mutation_p.S100F|CPNE1_uc002xdm.2_Missense_Mutation_p.S100F|CPNE1_uc010gfk.1_Missense_Mutation_p.S100F|CPNE1_uc002xdn.1_RNA|CPNE1_uc002xdo.1_RNA|CPNE1_uc002xdp.1_RNA	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	100					lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CTGTCCTAGGGAACACTCAGC	0.537													26	56					0	0	0.002096	0	0
ACTR5	79913	broad.mit.edu	37	20	37396215	37396215	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:37396215G>T	uc002xjd.2	+	8	1567	c.1542G>T	c.(1540-1542)ATG>ATT	p.M514I		NM_024855	NP_079131	Q9H9F9	ARP5_HUMAN	ARP5 actin-related protein 5 homolog	514					DNA recombination|double-strand break repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent|UV-damage excision repair	cytoplasm|Ino80 complex	ATP binding|protein binding				0		Myeloproliferative disorder(115;0.00878)				TGTTGGAGATGAGACCCTTCC	0.403													19	36					1.56452e-12	1.90444e-12	0.007413	1	0
PLCG1	5335	broad.mit.edu	37	20	39791897	39791897	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:39791897C>T	uc002xjp.1	+	8	892	c.771C>T	c.(769-771)TTC>TTT	p.F257F	PLCG1_uc002xjo.1_Silent_p.F257F|PLCG1_uc010zwe.1_5'Flank|PLCG1_uc010ggf.2_5'Flank	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	257					activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				TCCAGCAGTTCCTTCTTGACT	0.597													33	41					0	0	0.004878	0	0
PTPRT	11122	broad.mit.edu	37	20	40713343	40713343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:40713343C>T	uc002xkg.2	-	29	4299	c.4115G>A	c.(4114-4116)GGA>GAA	p.G1372E	PTPRT_uc010ggj.2_Missense_Mutation_p.G1391E|PTPRT_uc010ggi.2_Missense_Mutation_p.G575E	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1372	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CACAGTACGTCCCTCCCTCCC	0.612													6	10					0	0	0.003080	0	0
R3HDML	140902	broad.mit.edu	37	20	42969931	42969931	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:42969931G>A	uc002xls.1	+	2	529	c.357G>A	c.(355-357)CAG>CAA	p.Q119Q		NM_178491	NP_848586	Q9H3Y0	CRSPL_HUMAN	R3H domain containing-like precursor	119						extracellular region	peptidase inhibitor activity				0		Myeloproliferative disorder(115;0.028)	COAD - Colon adenocarcinoma(18;0.00189)			ACGTGGGCCAGAACCTCTCCA	0.468													13	32					0	0	0.006122	0	0
KCNS1	3787	broad.mit.edu	37	20	43723761	43723761	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:43723761C>T	uc002xnc.2	-	5	1728	c.1331G>A	c.(1330-1332)GGG>GAG	p.G444E	KCNS1_uc002xnd.2_Missense_Mutation_p.G444E	NM_002251	NP_002242	Q96KK3	KCNS1_HUMAN	potassium voltage-gated channel	444	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity|protein binding				0		Myeloproliferative disorder(115;0.0122)				CAGGATGCCCCCTAGGATGCA	0.622													17	22					0	0	0.004990	0	0
CTSA	5476	broad.mit.edu	37	20	44521472	44521472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:44521472C>T	uc002xqj.3	+	6	1027	c.553C>T	c.(553-555)CCC>TCC	p.P185S	NEURL2_uc002xqg.1_5'Flank|CTSA_uc002xqh.2_Missense_Mutation_p.P203S|CTSA_uc002xqi.2_RNA|CTSA_uc010zxi.1_Missense_Mutation_p.P186S|CTSA_uc002xqk.3_Missense_Mutation_p.P185S	NM_001127695	NP_001121167	P10619	PPGB_HUMAN	cathepsin A isoform b precursor	185					intracellular protein transport|proteolysis	endoplasmic reticulum|lysosome|nucleus	enzyme activator activity|protein binding|serine-type carboxypeptidase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CATCTACATCCCCACCCTGGC	0.547													8	25					0	0	0.004482	0	0
ZNF335	63925	broad.mit.edu	37	20	44594306	44594306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:44594306G>A	uc002xqw.2	-	7	1186	c.1063C>T	c.(1063-1065)CGG>TGG	p.R355W	ZNF335_uc010zxk.1_Missense_Mutation_p.R200W|ZNF335_uc002xqx.1_Missense_Mutation_p.R323W	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	355					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GGCAGCTTCCGGGGCCGGCCA	0.677													19	23					0	0	0.007413	0	0
MMP9	4318	broad.mit.edu	37	20	44639787	44639787	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:44639787C>T	uc002xqz.2	+	5	674	c.655C>T	c.(655-657)CCA>TCA	p.P219S		NM_004994	NP_004985	P14780	MMP9_HUMAN	matrix metalloproteinase 9 preproprotein	219					collagen catabolic process|macrophage differentiation|positive regulation of keratinocyte migration|proteolysis	extracellular space|proteinaceous extracellular matrix	collagen binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)			Glucosamine(DB01296)|Marimastat(DB00786)|Minocycline(DB01017)|Simvastatin(DB00641)	TGCAGTGGTTCCAACTCGGTT	0.632													69	127					0	0	0.003610	0	0
NCOA5	57727	broad.mit.edu	37	20	44692186	44692186	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:44692186G>A	uc002xrd.2	-	6	1491	c.963C>T	c.(961-963)ATC>ATT	p.I321I	NCOA5_uc002xrc.2_Silent_p.I209I|NCOA5_uc002xre.2_Silent_p.I321I	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	321					regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				TTTCCTGCAGGATGGCTTCAT	0.582													17	26					0	0	0.004990	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47585801	47585801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:47585801C>T	uc002xtx.3	+	9	1329	c.1177C>T	c.(1177-1179)CCT>TCT	p.P393S		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	393					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			TGGTGAAGGCCCTCCAGACCC	0.527													29	40					0	0	0.002445	0	0
ARFGEF2	10564	broad.mit.edu	37	20	47587733	47587733	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:47587733A>G	uc002xtx.3	+	10	1419	c.1267A>G	c.(1267-1269)AGG>GGG	p.R423G		NM_006420	NP_006411	Q9Y6D5	BIG2_HUMAN	ADP-ribosylation factor guanine	423					exocytosis|intracellular signal transduction|regulation of ARF protein signal transduction	cytosol|Golgi membrane	ARF guanyl-nucleotide exchange factor activity			breast(3)|upper_aerodigestive_tract(1)	4			BRCA - Breast invasive adenocarcinoma(12;0.00148)|Colorectal(8;0.198)			CCCCGTATTCAGGACTCACGA	0.488													4	97					0	0	0.000602	0	0
DDX27	55661	broad.mit.edu	37	20	47852896	47852896	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:47852896C>T	uc002xuh.2	+	14	1690	c.1629C>T	c.(1627-1629)ACC>ACT	p.T543T		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	543	Helicase C-terminal.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TGCCTAATACCATCAAACATT	0.532													24	85					0	0	0.004656	0	0
PTPN1	5770	broad.mit.edu	37	20	49195771	49195771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:49195771C>T	uc002xvl.2	+	7	943	c.769C>T	c.(769-771)CGG>TGG	p.R257W	PTPN1_uc010zys.1_Missense_Mutation_p.R184W	NM_002827	NP_002818	P18031	PTN1_HUMAN	protein tyrosine phosphatase, non-receptor type	257	Tyrosine-protein phosphatase.				blood coagulation|interferon-gamma-mediated signaling pathway|negative regulation of insulin receptor signaling pathway|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|type I interferon-mediated signaling pathway	cytosol|endoplasmic reticulum membrane	protein tyrosine phosphatase activity|zinc ion binding				0		Lung NSC(126;0.163)			Clodronate(DB00720)|Tiludronate(DB01133)	GAGGAAGTTTCGGATGGGGCT	0.512													47	79					0	0	0.003610	0	0
MOCS3	27304	broad.mit.edu	37	20	49576659	49576659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:49576659C>T	uc002xvy.1	+	1	1297	c.1280C>T	c.(1279-1281)TCC>TTC	p.S427F	DPM1_uc002xvw.1_5'Flank|DPM1_uc002xvx.1_5'Flank	NM_014484	NP_055299	O95396	MOCS3_HUMAN	molybdenum cofactor synthesis 3	427	Rhodanese.				enzyme active site formation via L-cysteine persulfide|Mo-molybdopterin cofactor biosynthetic process|tRNA thio-modification|tRNA wobble uridine modification|water-soluble vitamin metabolic process	cytosol	ATP binding|metal ion binding|nucleotidyltransferase activity|protein binding|thiosulfate sulfurtransferase activity|URM1 activating enzyme activity			skin(2)|ovary(1)	3						ATCCTCCAGTCCTTATCAGCA	0.507													25	51					0	0	0.003954	0	0
NFATC2	4773	broad.mit.edu	37	20	50048876	50048876	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:50048876T>C	uc002xwd.2	-	9	2670	c.2450A>G	c.(2449-2451)AAC>AGC	p.N817S	NFATC2_uc002xwc.2_Missense_Mutation_p.N817S|NFATC2_uc010zyv.1_Missense_Mutation_p.N598S|NFATC2_uc010zyw.1_Missense_Mutation_p.N598S|NFATC2_uc010zyx.1_Missense_Mutation_p.N797S|NFATC2_uc010zyy.1_Missense_Mutation_p.N598S|NFATC2_uc010zyz.1_Missense_Mutation_p.N598S|NFATC2_uc002xwe.2_Missense_Mutation_p.N797S	NM_173091	NP_775114	Q13469	NFAC2_HUMAN	nuclear factor of activated T-cells,	817					B cell receptor signaling pathway|positive regulation of B cell proliferation|response to DNA damage stimulus|response to drug	actin cytoskeleton|nucleus|plasma membrane	protein binding|sequence-specific DNA binding transcription factor activity			ovary(2)	2	Hepatocellular(150;0.248)					CAGCTGCTGGTTGGTGGGTGA	0.657													28	43					0	0	0.002445	0	0
SALL4	57167	broad.mit.edu	37	20	50407835	50407835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:50407835G>A	uc002xwh.3	-	2	1288	c.1187C>T	c.(1186-1188)TCC>TTC	p.S396F	SALL4_uc010gii.2_Intron|SALL4_uc002xwi.3_Intron	NM_020436	NP_065169	Q9UJQ4	SALL4_HUMAN	sal-like 4	396	C2H2-type 1.				transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						GATCTGCAAGGAGCTATCAGT	0.547													15	31					0	0	0.004007	0	0
TSHZ2	128553	broad.mit.edu	37	20	51870879	51870879	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:51870879G>A	uc002xwo.2	+	2	1838	c.882G>A	c.(880-882)ATG>ATA	p.M294I		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	294	C2H2-type 2.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GCGTCCACATGATTAAAACAA	0.438													15	33					0	0	0.002450	0	0
DOK5	55816	broad.mit.edu	37	20	53205106	53205106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:53205106G>A	uc002xwy.2	+	3	479	c.259G>A	c.(259-261)GAT>AAT	p.D87N	DOK5_uc010gin.2_5'UTR|DOK5_uc002xwz.2_5'UTR	NM_018431	NP_060901	Q9P104	DOK5_HUMAN	docking protein 5	87	PH.						insulin receptor binding			ovary(1)	1			Colorectal(105;0.202)			TTTCAATGACGATACCTCCAA	0.418													28	60					0	0	0.002096	0	0
GNAS	2778	broad.mit.edu	37	20	57428970	57428970	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:57428970G>A	uc002xzw.2	+	1	935	c.650G>A	c.(649-651)AGC>AAC	p.S217N	GNAS_uc002xzt.2_Intron|GNAS_uc002xzu.3_Intron|GNAS_uc010gjq.2_Intron|GNAS_uc002xzv.2_RNA	NM_080425	NP_536350	P63092	GNAS2_HUMAN	GNAS complex locus XLas	Error:Variant_position_missing_in_P63092_after_alignment					activation of adenylate cyclase activity|cellular response to glucagon stimulus|energy reserve metabolic process|G-protein coupled receptor protein signaling pathway|intracellular transport|platelet activation|regulation of insulin secretion|sensory perception of smell|transmembrane transport|water transport	heterotrimeric G-protein complex|intrinsic to membrane|trans-Golgi network membrane	adenylate cyclase activity|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|identical protein binding|signal transducer activity			pituitary(201)|thyroid(35)|ovary(15)|adrenal_gland(9)|liver(7)|large_intestine(5)|parathyroid(5)|kidney(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|testis(1)|stomach(1)|small_intestine(1)|autonomic_ganglia(1)|pancreas(1)	292	all_lung(29;0.0104)		BRCA - Breast invasive adenocarcinoma(13;2.19e-08)|Colorectal(105;0.109)			GGAGGCTACAGCCCTCCCCCT	0.642			Mis		pituitary adenoma		McCune-Albright syndrome; pseudohypoparathyroidism|type IA		3-Methylglutaconic_Aciduria_and_Myelodysplasia|McCune-Albright_syndrome|Mazabraud_syndrome	TSP Lung(22;0.16)			3	5					0	0	0.004672	0	0
ZNF831	128611	broad.mit.edu	37	20	57828080	57828080	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:57828080C>T	uc002yan.2	+	4	4075	c.4075C>T	c.(4075-4077)CCT>TCT	p.P1359S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1359						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGAATCACCTCCTTGTTGTGG	0.448													13	22					0	0	0.001368	0	0
DIDO1	11083	broad.mit.edu	37	20	61513394	61513394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:61513394G>A	uc002ydr.1	-	16	4178	c.3914C>T	c.(3913-3915)TCG>TTG	p.S1305L	DIDO1_uc002yds.1_Missense_Mutation_p.S1305L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1305					apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					GGAAGCAGACGAAGCGGTGGA	0.597													34	79					0	0	0.005524	0	0
BIRC7	79444	broad.mit.edu	37	20	61870828	61870828	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:61870828G>A	uc002yej.2	+	6	941	c.768G>A	c.(766-768)CTG>CTA	p.L256L	BIRC7_uc010gkc.1_3'UTR|BIRC7_uc002yei.2_Silent_p.L238L	NM_139317	NP_647478	Q96CA5	BIRC7_HUMAN	livin inhibitor of apoptosis isoform alpha	256	RING-type.				activation of JUN kinase activity|anti-apoptosis|DNA fragmentation involved in apoptotic nuclear change	cytoplasm|nucleus	enzyme binding|zinc ion binding			ovary(1)|lung(1)|kidney(1)	3	all_cancers(38;2.72e-09)					AGGTGTGCCTGGACCGCGCCG	0.697													15	34					0	0	0.004007	0	0
CHRNA4	1137	broad.mit.edu	37	20	61981885	61981885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:61981885G>A	uc002yes.2	-	5	1056	c.878C>T	c.(877-879)ACC>ATC	p.T293I	CHRNA4_uc002yet.1_Missense_Mutation_p.T117I|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Missense_Mutation_p.T222I|CHRNA4_uc002yev.1_Missense_Mutation_p.T117I|CHRNA4_uc010gkf.1_Missense_Mutation_p.T117I	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	293	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GATGATCTCGGTGATGAGCAG	0.582													17	26					0	0	0.004007	0	0
MYT1	4661	broad.mit.edu	37	20	62839626	62839626	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:62839626G>A	uc002yii.2	+	7	1441	c.1077G>A	c.(1075-1077)CGG>CGA	p.R359R	MYT1_uc002yih.2_Intron|MYT1_uc002yij.2_5'UTR	NM_004535	NP_004526	Q01538	MYT1_HUMAN	myelin transcription factor 1	359					cell differentiation|nervous system development	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2	all_cancers(38;1.82e-11)|all_epithelial(29;3.3e-13)|Lung NSC(23;5.21e-10)|all_lung(23;1.92e-09)					CCCACTCCCGGAAGTCAACAG	0.602													20	30					0	0	0.001216	0	0
LIPI	149998	broad.mit.edu	37	21	15561692	15561692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:15561692G>A	uc002yjm.2	-	2	168	c.158C>T	c.(157-159)TCC>TTC	p.S53F	LIPI_uc010gkw.1_5'UTR	NM_198996	NP_945347	Q6XZB0	LIPI_HUMAN	lipase, member I	32					lipid catabolic process	extracellular region|extracellular space|membrane|plasma membrane	heparin binding|phospholipase activity			ovary(2)	2				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.0015)|Colorectal(24;0.00693)|Lung(58;0.166)		ATCTCTGAAGGAATCCTTTAC	0.353													10	24					0	0	0.000673	0	0
NCAM2	4685	broad.mit.edu	37	21	22881216	22881216	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:22881216G>A	uc002yld.1	+	16	2371	c.2122G>A	c.(2122-2124)GGA>AGA	p.G708R	NCAM2_uc011acb.1_Missense_Mutation_p.G566R	NM_004540	NP_004531	O15394	NCAM2_HUMAN	neural cell adhesion molecule 2 precursor	708	Helical; (Potential).				neuron cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)	4		Lung NSC(9;0.195)		all cancers(11;0.00102)|OV - Ovarian serous cystadenocarcinoma(11;0.00121)|Epithelial(23;0.00147)|Colorectal(24;0.174)		AATTGGCCTGGGAGTTGCTGC	0.358													18	20					0	0	0.007413	0	0
KRTAP13-3	337960	broad.mit.edu	37	21	31797904	31797904	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:31797904G>A	uc002yob.1	-	1	327	c.327C>T	c.(325-327)TCC>TCT	p.S109S		NM_181622	NP_853653	Q3SY46	KR133_HUMAN	keratin associated protein 13-3	109						intermediate filament				ovary(1)|lung(1)	2						CACAGCTCAGGGAGCAGCAGC	0.517													9	16					0	0	0.006214	0	0
SYNJ1	8867	broad.mit.edu	37	21	34030093	34030093	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:34030093C>G	uc002yqh.2	-	19	2511	c.2511G>C	c.(2509-2511)AAG>AAC	p.K837N	SYNJ1_uc011ads.1_Missense_Mutation_p.K793N|SYNJ1_uc002yqf.2_Missense_Mutation_p.K798N|SYNJ1_uc002yqg.2_Missense_Mutation_p.K793N|SYNJ1_uc002yqi.2_Missense_Mutation_p.K837N	NM_003895	NP_003886	O43426	SYNJ1_HUMAN	synaptojanin 1 isoform a	798	Catalytic (Potential).						inositol-polyphosphate 5-phosphatase activity|nucleotide binding|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity|RNA binding			ovary(4)|skin(1)	5						GGGTGCGGCACTTTTCACTGG	0.413													9	39					0	0	0.004482	0	0
TTC3	7267	broad.mit.edu	37	21	38516888	38516888	+	Silent	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:38516888G>C	uc002yvz.2	+	21	1941	c.1836G>C	c.(1834-1836)GTG>GTC	p.V612V	TTC3_uc011aee.1_Silent_p.V302V|TTC3_uc002ywa.2_Silent_p.V612V|TTC3_uc002ywb.2_Silent_p.V612V|TTC3_uc010gnf.2_Silent_p.V377V|TTC3_uc002ywc.2_Silent_p.V302V|TTC3_uc011aed.1_Silent_p.V302V|TTC3_uc010gne.1_Silent_p.V612V	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	612					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				TTCCTGGAGTGTTAACTTGGC	0.343													19	43					0	0	0.007413	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671360	39671360	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:39671360C>T	uc002ywv.2	+	4	479	c.177C>T	c.(175-177)ATC>ATT	p.I59I	KCNJ15_uc002yww.2_Silent_p.I59I|KCNJ15_uc002ywx.2_Silent_p.I59I	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	59	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						CCACAGTTATCGACATGAAGT	0.483													18	33					0	0	0.004990	0	0
ZNF295	49854	broad.mit.edu	37	21	43411387	43411387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:43411387G>A	uc002zab.3	-	3	3032	c.2818C>T	c.(2818-2820)CAC>TAC	p.H940Y	ZNF295_uc002yzz.3_Missense_Mutation_p.H739Y|ZNF295_uc002yzy.3_Missense_Mutation_p.H940Y|ZNF295_uc002zaa.3_Missense_Mutation_p.H940Y	NM_001098402	NP_001091872	Q9ULJ3	ZN295_HUMAN	zinc finger protein 295 isoform L	940	C2H2-type 7.				negative regulation of transcription, DNA-dependent|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus|nucleus	methyl-CpG binding|protein binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3						TTGCACACGTGACAAATAAAT	0.498													10	32					0	0	0.000673	0	0
UBASH3A	53347	broad.mit.edu	37	21	43864686	43864686	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:43864686C>T	uc002zbe.2	+	14	1817	c.1781C>T	c.(1780-1782)TCC>TTC	p.S594F	UBASH3A_uc002zbf.2_Missense_Mutation_p.S556F|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Intron	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	594	Phosphatase-like.					cytosol|nucleus				ovary(3)	3						ACTCTGGACTCCTGCACGCGG	0.577													37	120					0	0	0.006999	0	0
WDR4	10785	broad.mit.edu	37	21	44282451	44282451	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:44282451G>A	uc002zci.2	-	5	580	c.507C>T	c.(505-507)ATC>ATT	p.I169I	WDR4_uc002zck.1_Silent_p.I169I|WDR4_uc002zcl.1_Silent_p.I23I|WDR4_uc010gpg.1_Silent_p.I169I|WDR4_uc011aew.1_Silent_p.I23I|WDR4_uc010gph.1_Silent_p.I23I	NM_033661	NP_387510	P57081	WDR4_HUMAN	WD repeat domain 4 protein	169	WD 2.				tRNA modification	cytoplasm|nucleoplasm	protein binding			ovary(1)	1				Colorectal(79;0.0165)|Lung(125;0.0484)|STAD - Stomach adenocarcinoma(101;0.0624)|COAD - Colon adenocarcinoma(84;0.128)|LUSC - Lung squamous cell carcinoma(216;0.244)		AGCTGACTCGGATCTTCTCGT	0.602													8	8					0	0	0.004482	0	0
COL6A2	1292	broad.mit.edu	37	21	47545180	47545180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr21:47545180G>A	uc002zia.1	+	24	1853	c.1771G>A	c.(1771-1773)GAG>AAG	p.E591K	COL6A2_uc002zhy.1_Missense_Mutation_p.E591K|COL6A2_uc002zhz.1_Missense_Mutation_p.E591K|COL6A2_uc002zib.1_5'UTR|COL6A2_uc002zic.1_5'Flank	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	591	Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		TGCATTGCAGGAGTGTGACGT	0.687													30	43					0	0	0.001951	0	0
CECR1	51816	broad.mit.edu	37	22	17684453	17684453	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:17684453C>T	uc002zmk.1	-	3	965	c.753G>A	c.(751-753)CCG>CCA	p.P251P	CECR1_uc010gqu.1_Silent_p.P251P|CECR1_uc011agi.1_Silent_p.P209P|CECR1_uc011agj.1_Silent_p.P209P	NM_017424	NP_059120	Q9NZK5	CECR1_HUMAN	cat eye syndrome critical region protein 1	251					adenosine catabolic process|hypoxanthine salvage|inosine biosynthetic process|multicellular organismal development|purine ribonucleoside monophosphate biosynthetic process	extracellular space|Golgi apparatus	adenosine deaminase activity|adenosine receptor binding|growth factor activity|heparin binding|protein homodimerization activity|proteoglycan binding|zinc ion binding			ovary(1)	1		all_epithelial(15;0.0152)|Lung NSC(13;0.0875)|all_lung(157;0.106)				CTGGGCTCACCGGCAGCAGCC	0.532													5	20					0	0	0.001168	0	0
BCL2L13	23786	broad.mit.edu	37	22	18209980	18209980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:18209980C>T	uc002zmw.2	+	7	1356	c.1138C>T	c.(1138-1140)CTT>TTT	p.L380F	BCL2L13_uc002zmx.2_Missense_Mutation_p.L218F|BCL2L13_uc002zmy.2_3'UTR|BCL2L13_uc010gqy.2_Missense_Mutation_p.L218F|BCL2L13_uc011agk.1_Missense_Mutation_p.L256F|BCL2L13_uc010gqz.2_Missense_Mutation_p.L100F|BCL2L13_uc002zmz.2_Missense_Mutation_p.L218F|BCL2L13_uc002zna.2_Missense_Mutation_p.L100F	NM_015367	NP_056182	Q9BXK5	B2L13_HUMAN	BCL2-like 13 (apoptosis facilitator)	380	Glu-rich.				induction of apoptosis	integral to membrane|mitochondrial membrane|nucleus	caspase activator activity			ovary(1)|lung(1)|central_nervous_system(1)|skin(1)	4		all_epithelial(15;0.123)		Lung(27;0.199)		GTTTGTAGAACTTGATGAAGA	0.512													24	41					0	0	0.002299	0	0
CLTCL1	8218	broad.mit.edu	37	22	19222165	19222165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:19222165G>A	uc002zpb.2	-	7	1109	c.1034C>T	c.(1033-1035)CCA>CTA	p.P345L	CLTCL1_uc011agv.1_Missense_Mutation_p.P345L|CLTCL1_uc011agw.1_Missense_Mutation_p.P345L	NM_007098	NP_009029	P53675	CLH2_HUMAN	clathrin, heavy polypeptide-like 1 isoform 1	345	Globular terminal domain.				anatomical structure morphogenesis|intracellular protein transport|mitosis|positive regulation of glucose import|receptor-mediated endocytosis	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|spindle|trans-Golgi network	protein binding|signal transducer activity|structural molecule activity			ovary(4)|central_nervous_system(1)	5	Colorectal(54;0.0993)					ACCAAGGTCTGGATTCTGAAG	0.478			T	?	ALCL								37	73					0	0	0.006999	0	0
Unknown	0	broad.mit.edu	37	22	20294298	20294298	+	RNA	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:20294298T>C	uc002zrw.1	+	1		c.2738T>C								Homo sapiens mRNA for KIAA1653 protein, partial cds.																		GCAGCGGAAGTTCAATGTGGA	0.607													18	34					0	0	0.007413	0	0
SCARF2	91179	broad.mit.edu	37	22	20780370	20780370	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:20780370G>A	uc002zsj.1	-	11	2013	c.1908C>T	c.(1906-1908)GCC>GCT	p.A636A	SCARF2_uc002zsk.1_Silent_p.A631A	NM_153334	NP_699165	Q96GP6	SREC2_HUMAN	scavenger receptor class F, member 2 isoform 1	631	Cytoplasmic (Potential).			ARVARREARPARA -> PTTTWITHSTAAS (in Ref. 2; AAH00584).	cell adhesion	integral to membrane	protein binding|receptor activity			breast(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			gggccggccgggccTCGCGTC	0.637													5	7					0	0	0.000602	0	0
AIFM3	150209	broad.mit.edu	37	22	21332232	21332233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:21332232_21332233CC>TT	uc002ztj.2	+	16	1633_1634	c.1415_1416CC>TT	c.(1414-1416)CCC>CTT	p.P472L	AIFM3_uc002ztk.2_Missense_Mutation_p.P472L|AIFM3_uc002ztl.2_Missense_Mutation_p.P478L|AIFM3_uc011ahx.1_Missense_Mutation_p.P460L|AIFM3_uc002ztm.1_Missense_Mutation_p.P284L|LZTR1_uc002ztn.2_5'Flank	NM_144704	NP_653305	Q96NN9	AIFM3_HUMAN	apoptosis-inducing factor,	472					activation of caspase activity by cytochrome c|cell redox homeostasis|electron transport chain|induction of apoptosis|mitochondrial depolarization|transport	endoplasmic reticulum|mitochondrial inner membrane	2 iron, 2 sulfur cluster binding|caspase activator activity|flavin adenine dinucleotide binding|metal ion binding|oxidoreductase activity|protein binding			ovary(2)|lung(2)	4	all_cancers(11;3.71e-26)|all_epithelial(7;1.59e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0367)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			GTCACCTTCCCCCTTGCCTGGA	0.594													9	14					0	0	0.004672	0	0
MAPK1	5594	broad.mit.edu	37	22	22142678	22142678	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:22142678C>T	uc002zvn.2	-	6	965	c.725_splice	c.e6-1	p.G242_splice	MAPK1_uc002zvo.2_Splice_Site_p.G242_splice|MAPK1_uc010gtk.1_Intron	NM_002745	NP_002736	P28482	MK01_HUMAN	mitogen-activated protein kinase 1						activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|induction of apoptosis|innate immune response|insulin receptor signaling pathway|interspecies interaction between organisms|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|platelet activation|Ras protein signal transduction|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|synaptic transmission|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription, DNA-dependent	cytosol|nucleoplasm	ATP binding|DNA binding|MAP kinase activity|phosphatase binding|RNA polymerase II carboxy-terminal domain kinase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3	Colorectal(54;0.105)	all_lung(157;3.89e-05)		READ - Rectum adenocarcinoma(21;0.0689)	Arsenic trioxide(DB01169)	CCAAGAATACCTATCAGATAA	0.358													21	54					0	0	0.002780	0	0
LOC96610	96610	broad.mit.edu	37	22	22664606	22664606	+	RNA	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:22664606A>G	uc011aim.1	+	31		c.2121A>G			LOC96610_uc011aiq.1_RNA					Parts of antibodies, mostly variable regions.												0						GTCTTCATGCAAACTTGGTAT	0.398													3	12					0	0	0.004672	0	0
LOC96610	96610	broad.mit.edu	37	22	23077429	23077429	+	RNA	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:23077429T>A	uc011aim.1	+	187		c.10120T>A								Parts of antibodies, mostly variable regions.												0						AAACTCATGATTTATGAGGTC	0.577													44	101					0	0	0.003214	0	0
LOC96610	96610	broad.mit.edu	37	22	23090285	23090285	+	RNA	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:23090285G>A	uc011aim.1	+	203		c.10579G>A								Parts of antibodies, mostly variable regions.												0						AGGCCCTCAGGGATCCCTGAG	0.498													9	29					0	0	0.006214	0	0
LOC96610	96610	broad.mit.edu	37	22	23243432	23243432	+	RNA	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:23243432G>A	uc011aim.1	+	369		c.15759G>A			uc002zws.2_Intron					Parts of antibodies, mostly variable regions.												0						ACGCATGAAGGGAGCACCGTG	0.577													6	11					0	0	0.003080	0	0
MMP11	4320	broad.mit.edu	37	22	24123412	24123412	+	Silent	SNP	C	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:24123412C>A	uc002zxx.2	+	6	913	c.891C>A	c.(889-891)TCC>TCA	p.S297S	MMP11_uc002zxy.2_RNA|MMP11_uc002zxz.2_RNA	NM_005940	NP_005931	P24347	MMP11_HUMAN	matrix metalloproteinase 11 preproprotein	297					collagen catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|large_intestine(1)	3		Medulloblastoma(6;9.86e-08)|all_neural(6;0.000318)				GTGAGGCCTCCTTTGACGCGG	0.637													37	48					4.01765e-15	4.90821e-15	0.002222	1	0
SRRD	402055	broad.mit.edu	37	22	26884359	26884359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:26884359C>T	uc010gve.2	+	4	521	c.514C>T	c.(514-516)CCC>TCC	p.P172S	SRRD_uc003acp.3_Missense_Mutation_p.P165S	NM_001013694	NP_001013716	Q9UH36	SRR1L_HUMAN	SRR1 domain containing	172					rhythmic process						0						CTTCTAGATTCCCAGAAGTCA	0.428													50	68					0	0	0.003610	0	0
CCDC117	150275	broad.mit.edu	37	22	29182126	29182126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:29182126C>T	uc003aeb.2	+	5	828	c.652C>T	c.(652-654)CTT>TTT	p.L218F	CCDC117_uc011aki.1_Missense_Mutation_p.L200F|CCDC117_uc011akj.1_Missense_Mutation_p.L143F|CCDC117_uc011akk.1_Missense_Mutation_p.L86F	NM_173510	NP_775781	Q8IWD4	CC117_HUMAN	coiled-coil domain containing 117	218										breast(1)	1						CCCTGAACTCCTTTCTGATAA	0.433													24	40					0	0	0.004656	0	0
CABP7	164633	broad.mit.edu	37	22	30124621	30124621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:30124621G>A	uc003agl.2	+	3	326	c.256G>A	c.(256-258)GAT>AAT	p.D86N		NM_182527	NP_872333	Q86V35	CABP7_HUMAN	calcium binding protein 7	86	Cytoplasmic (Potential).|EF-hand 2.|2 (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding				0			OV - Ovarian serous cystadenocarcinoma(5;0.00442)|Epithelial(10;0.215)|all cancers(5;0.233)			TCCACCAGGTGATGGTCAAGT	0.572													16	14					0	0	0.004990	0	0
EIF4ENIF1	56478	broad.mit.edu	37	22	31851278	31851278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:31851278G>A	uc003akz.1	-	9	1287	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	EIF4ENIF1_uc003akx.1_Missense_Mutation_p.P54S|EIF4ENIF1_uc003aky.1_Missense_Mutation_p.P54S|EIF4ENIF1_uc003ala.1_Missense_Mutation_p.P375S|EIF4ENIF1_uc003alb.1_Missense_Mutation_p.P212S	NM_019843	NP_062817	Q9NRA8	4ET_HUMAN	eukaryotic translation initiation factor 4E	375						nucleus	protein binding|protein transporter activity			ovary(1)	1						TTCTGTCCAGGAGAGAGGATG	0.378													10	29					0	0	0.001855	0	0
TOM1	10043	broad.mit.edu	37	22	35742938	35742938	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:35742938G>A	uc003ann.2	+	14	1425	c.1300G>A	c.(1300-1302)GAG>AAG	p.E434K	TOM1_uc011ami.1_Missense_Mutation_p.E401K|TOM1_uc011amj.1_Missense_Mutation_p.E277K|TOM1_uc003ans.2_Missense_Mutation_p.E277K|TOM1_uc011amk.1_Missense_Mutation_p.E396K|TOM1_uc003anp.2_Missense_Mutation_p.E434K|TOM1_uc011aml.1_Missense_Mutation_p.E389K|TOM1_uc003ano.2_RNA|TOM1_uc003anq.2_Missense_Mutation_p.E428K|TOM1_uc003anr.2_Missense_Mutation_p.E277K	NM_005488	NP_005479	O60784	TOM1_HUMAN	target of myb1 isoform 1	434					endocytosis|endosome transport|intracellular protein transport	cytosol|early endosome|membrane	protein binding			ovary(1)	1						TGATGCGGAAGAGCCTAAGGG	0.667													13	43					0	0	0.004990	0	0
MCM5	4174	broad.mit.edu	37	22	35815966	35815967	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:35815966_35815967GG>AA	uc003anu.3	+	14	1887_1888	c.1793_1794GG>AA	c.(1792-1794)AGG>AAA	p.R598K	MCM5_uc010gwr.2_Missense_Mutation_p.R407K|MCM5_uc003anv.3_Missense_Mutation_p.R555K|MCM5_uc003anw.1_Missense_Mutation_p.R382K	NM_006739	NP_006730	P33992	MCM5_HUMAN	minichromosome maintenance complex component 5	598				ARQHERDSDRR -> PVSTRGTVTA (in Ref. 3; BAA12176).	cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	MCM complex	ATP binding|DNA binding|helicase activity|protein binding			ovary(1)	1						CAGCACGAGAGGGACAGTGACC	0.644													22	50					0	0	0.004672	0	0
RASD2	23551	broad.mit.edu	37	22	35947680	35947680	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:35947680C>T	uc003anx.2	+	3	607	c.402C>T	c.(400-402)CCC>CCT	p.P134P	RASD2_uc003any.2_Silent_p.P134P	NM_014310	NP_055125	Q96D21	RHES_HUMAN	RASD family, member 2 precursor	134					locomotory behavior|positive regulation of protein kinase B signaling cascade|positive regulation of protein sumoylation|regulation of cAMP-mediated signaling	intracellular|plasma membrane	G-protein beta-subunit binding|GTP binding|GTPase activity			lung(2)|skin(1)	3						CGGAGCTGCCCATGGTCATCT	0.622													9	18					0	0	0.000673	0	0
APOL5	80831	broad.mit.edu	37	22	36123135	36123135	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:36123135G>A	uc003aof.2	+	3	1020	c.1020G>A	c.(1018-1020)CTG>CTA	p.L340L		NM_030642	NP_085145	Q9BWW9	APOL5_HUMAN	apolipoprotein L5	340					lipid metabolic process|lipid transport|lipoprotein metabolic process	cytoplasm|extracellular region	high-density lipoprotein particle binding|lipid binding|protein binding				0						AGCAGGAGCTGGACCGGCTCA	0.627													17	16					0	0	0.004007	0	0
TRIOBP	11078	broad.mit.edu	37	22	38120377	38120377	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:38120377G>C	uc003atr.2	+	7	2085	c.1814G>C	c.(1813-1815)CGG>CCG	p.R605P	TRIOBP_uc003atu.2_Missense_Mutation_p.R433P|TRIOBP_uc003atq.1_Missense_Mutation_p.R605P|TRIOBP_uc003ats.1_Missense_Mutation_p.R433P	NM_001039141	NP_001034230	Q9H2D6	TARA_HUMAN	TRIO and F-actin binding protein isoform 6	605					actin modification|barbed-end actin filament capping	actin cytoskeleton|cytoplasm|nucleus	actin binding|GTP-Rho binding|myosin II binding|protein binding|ubiquitin protein ligase binding			central_nervous_system(1)	1	Melanoma(58;0.0574)					TGTGCCCAGCGGGACAATCCC	0.587													11	60					0	0	0.000673	0	0
MICALL1	85377	broad.mit.edu	37	22	38313756	38313756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:38313756C>T	uc003aui.2	+	4	464	c.380C>T	c.(379-381)CCG>CTG	p.P127L		NM_033386	NP_203744	Q8N3F8	MILK1_HUMAN	molecule interacting with Rab13	127						cytoplasm|cytoskeleton	protein binding|zinc ion binding			breast(1)	1	Melanoma(58;0.045)					CCCTGTTCCCCGCCGTCTGTA	0.617													10	39					0	0	0.000978	0	0
NPTXR	23467	broad.mit.edu	37	22	39222537	39222537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:39222537G>A	uc003awk.2	-	3	1220	c.1066C>T	c.(1066-1068)CAT>TAT	p.H356Y		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	356	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding			central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					ATGGGCTCATGGCCCGCCTCT	0.662													29	38					0	0	0.002445	0	0
APOBEC3B	9582	broad.mit.edu	37	22	39387460	39387461	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:39387460_39387461CC>TT	uc003awo.1	+	6	901_902	c.847_848CC>TT	c.(847-849)CCC>TTC	p.P283F	APOBEC3A_uc011aoc.1_Intron|APOBEC3B_uc003awp.1_Missense_Mutation_p.P258F|APOBEC3B_uc003awq.1_RNA|APOBEC3D_uc011aod.1_Intron|APOBEC3D_uc011aoe.1_Intron|APOBEC3D_uc011aof.1_Intron	NM_004900	NP_004891	Q9UH17	ABC3B_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	283					negative regulation of transposition		hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(58;0.04)					CTCCTGGAGCCCCTGCTTCTCC	0.594													25	42					0	0	0.004672	0	0
MCHR1	2847	broad.mit.edu	37	22	41077071	41077071	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:41077071G>A	uc003ayz.2	+	2	676	c.408G>A	c.(406-408)AAG>AAA	p.K136K	MCHR1_uc003aza.2_Silent_p.K25K	NM_005297	NP_005288	Q99705	MCHR1_HUMAN	G protein-coupled receptor 24	136	Helical; Name=1; (Potential).				elevation of cytosolic calcium ion concentration|feeding behavior|generation of precursor metabolites and energy|inhibition of adenylate cyclase activity by G-protein signaling pathway	integral to plasma membrane|nonmotile primary cilium	neuropeptide receptor activity				0						CGGTCGTGAAGAAGTCCAAGC	0.542													23	41					0	0	0.003330	0	0
GRAMD4	23151	broad.mit.edu	37	22	47059987	47059987	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:47059987C>T	uc003bhx.2	+	7	729	c.690C>T	c.(688-690)TCC>TCT	p.S230S	GRAMD4_uc010had.2_Silent_p.S169S	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	230					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		ACTGGTACTCCGTCTACACGT	0.597													27	55					0	0	0.001786	0	0
ZBED4	9889	broad.mit.edu	37	22	50278162	50278162	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:50278162C>T	uc003bix.2	+	2	1322	c.852C>T	c.(850-852)TCC>TCT	p.S284S		NM_014838	NP_055653	O75132	ZBED4_HUMAN	zinc finger, BED-type containing 4	284						cytoplasm|nucleus	DNA binding|metal ion binding|protein dimerization activity			ovary(2)	2		all_cancers(38;8.58e-10)|all_epithelial(38;1.15e-08)|all_lung(38;0.000109)|Lung NSC(38;0.0018)|Breast(42;0.00191)|Ovarian(80;0.0164)|Lung SC(80;0.164)		UCEC - Uterine corpus endometrioid carcinoma (28;0.168)|BRCA - Breast invasive adenocarcinoma(115;0.2)|LUAD - Lung adenocarcinoma(64;0.247)		CCTCTGGGTCCAGGAGAAGGT	0.562													18	50					0	0	0.007413	0	0
PIM3	415116	broad.mit.edu	37	22	50356709	50356710	+	Silent	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:50356709_50356710CC>TT	uc003bjb.2	+	6	1368_1369	c.915_916CC>TT	c.(913-918)GACCTG>GATTTG	p.305_306DL>DL	PIM3_uc011arj.1_Silent_p.68_69DL>DL	NM_001001852	NP_001001852	Q86V86	PIM3_HUMAN	serine/threonine protein kinase pim-3	305_306					cell cycle|negative regulation of apoptosis|regulation of mitotic cell cycle		ATP binding|protein binding|protein serine/threonine kinase activity				0		all_cancers(38;5.53e-07)|all_epithelial(38;3.84e-06)|all_lung(38;0.00208)|Breast(42;0.0104)|Lung NSC(38;0.0199)|Ovarian(80;0.0907)|Lung SC(80;0.236)		BRCA - Breast invasive adenocarcinoma(115;0.196)|LUAD - Lung adenocarcinoma(64;0.247)		AGAGCTGTGACCTGCGGCTGTG	0.683													3	11					0	0	0.004672	0	0
MOV10L1	54456	broad.mit.edu	37	22	50537966	50537966	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:50537966C>T	uc003bjj.2	+	3	460	c.377C>T	c.(376-378)TCC>TTC	p.S126F	MOV10L1_uc003bjk.3_Missense_Mutation_p.S126F|MOV10L1_uc011arp.1_Missense_Mutation_p.S106F|MOV10L1_uc010han.2_Missense_Mutation_p.S106F	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	126					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		TGTGTGACTTCCCTGGTGGAG	0.532													17	28					0	0	0.007413	0	0
SELO	83642	broad.mit.edu	37	22	50644880	50644880	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr22:50644880T>C	uc011arr.1	+	2	747	c.689T>C	c.(688-690)GTG>GCG	p.V230A	SELO_uc010hap.2_Missense_Mutation_p.V25A|SELO_uc003bjy.2_5'Flank	NM_031454	NP_113642	Q9BVL4	SELO_HUMAN	selenoprotein O	230											0		all_cancers(38;1.14e-10)|all_epithelial(38;2.12e-09)|all_lung(38;7.01e-05)|Breast(42;0.000523)|Lung NSC(38;0.0018)|Ovarian(80;0.0365)|Lung SC(80;0.113)		LUAD - Lung adenocarcinoma(64;0.105)		GTGCGCGACGTGTTCTATGAT	0.567											OREG0026675	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	7	9					0	0	0.003080	0	0
CNTN6	27255	broad.mit.edu	37	3	1363427	1363427	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:1363427G>A	uc003boz.2	+	8	1122	c.855G>A	c.(853-855)CCG>CCA	p.P285P	CNTN6_uc011asj.1_Silent_p.P213P|CNTN6_uc003bpa.2_Silent_p.P285P	NM_014461	NP_055276	Q9UQ52	CNTN6_HUMAN	contactin 6 precursor	285	Ig-like C2-type 3.				axon guidance|cell adhesion|central nervous system development|Notch signaling pathway	anchored to membrane|plasma membrane				skin(3)|lung(2)|breast(2)|pancreas(1)	8		all_cancers(2;0.000164)|all_epithelial(2;0.107)		Epithelial(13;0.000233)|all cancers(10;0.0013)|OV - Ovarian serous cystadenocarcinoma(96;0.0139)		TTGAAATCCCGAACTTCCAAC	0.453													32	32					0	0	0.003271	0	0
ITPR1	3708	broad.mit.edu	37	3	4725191	4725191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:4725191C>T	uc003bqa.2	+	27	3604	c.3256C>T	c.(3256-3258)CGG>TGG	p.R1086W	ITPR1_uc010hca.1_Missense_Mutation_p.R1071W|ITPR1_uc011asu.1_Intron|ITPR1_uc003bqc.2_Missense_Mutation_p.R17W	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	1095	Cytoplasmic (Potential).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		GCTCCTCTTCCGGCACTTCAG	0.592													23	12					0	0	0.002780	0	0
SRGAP3	9901	broad.mit.edu	37	3	9036042	9036042	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:9036042A>T	uc003brf.1	-	19	3069	c.2393T>A	c.(2392-2394)ATA>AAA	p.I798K	SRGAP3_uc003brg.1_Missense_Mutation_p.I774K	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	798					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		CTGTACAACTATGTACTGATG	0.413			T	RAF1	pilocytic astrocytoma								12	24					0	0	0.001855	0	0
PPARG	5468	broad.mit.edu	37	3	12421418	12421418	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:12421418C>T	uc003bwx.2	+	2	389	c.298C>T	c.(298-300)CAA>TAA	p.Q100*	PPARG_uc003bwr.2_Nonsense_Mutation_p.Q72*|PPARG_uc003bws.2_Nonsense_Mutation_p.Q72*|PPARG_uc003bwu.2_Nonsense_Mutation_p.Q72*|PPARG_uc003bwv.2_Nonsense_Mutation_p.Q72*|PPARG_uc010hea.1_RNA|PPARG_uc003bwq.1_Nonsense_Mutation_p.Q72*|PPARG_uc010hdz.1_RNA|PPARG_uc003bwt.1_Nonsense_Mutation_p.Q72*|PPARG_uc003bww.1_Nonsense_Mutation_p.Q100*	NM_015869	NP_056953	P37231	PPARG_HUMAN	peroxisome proliferative activated receptor	100					activation of caspase activity|cell fate commitment|cell maturation|cellular response to insulin stimulus|epithelial cell differentiation|glucose homeostasis|induction of apoptosis|innate immune response|lipid homeostasis|lipoprotein transport|long-chain fatty acid transport|low-density lipoprotein particle receptor biosynthetic process|monocyte differentiation|negative regulation of cholesterol storage|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of macrophage derived foam cell differentiation|negative regulation of receptor biosynthetic process|negative regulation of sequestering of triglyceride|negative regulation of transcription from RNA polymerase II promoter|placenta development|positive regulation of fat cell differentiation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to lipid|response to low-density lipoprotein particle stimulus|white fat cell differentiation	cytosol|nucleoplasm	activating transcription factor binding|arachidonic acid binding|drug binding|enzyme binding|prostaglandin receptor activity|retinoid X receptor binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|kidney(1)	2					Atorvastatin(DB01076)|Icosapent(DB00159)|Pioglitazone(DB01132)|Rosiglitazone(DB00412)|Troglitazone(DB00197)	CCTGAAACTTCAAGAGTACCA	0.378			T	PAX8	follicular thyroid		Insulin resistance ; lipodystrophy|familial partial L;diabetes mellitus|insulin-resistantI|with acanthosis nigricans and hypertension						75	60					0	0	0.003610	0	0
SH3BP5	9467	broad.mit.edu	37	3	15297671	15297671	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:15297671C>T	uc003bzp.1	-	9	1479	c.1290G>A	c.(1288-1290)CGG>CGA	p.R430R	SH3BP5_uc010hem.1_RNA|SH3BP5_uc003bzq.1_Silent_p.R273R|SH3BP5_uc003bzr.1_Silent_p.R273R|uc003bzo.1_RNA	NM_004844	NP_004835	O60239	3BP5_HUMAN	SH3-domain binding protein 5 (BTK-associated)	430					intracellular signal transduction	mitochondrion	protein kinase inhibitor activity|SH3 domain binding				0						GCTGCTTCATCCGGTTCTCCA	0.363													20	20					0	0	0.001523	0	0
HACL1	26061	broad.mit.edu	37	3	15604946	15604947	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:15604946_15604947GG>AA	uc003caf.2	-	16	1782_1783	c.1622_1623CC>TT	c.(1621-1623)TCC>TTT	p.S541F	HACL1_uc011avr.1_RNA|HACL1_uc011avs.1_Missense_Mutation_p.S514F|HACL1_uc011avt.1_Missense_Mutation_p.S481F|HACL1_uc003cag.2_Missense_Mutation_p.S185F|HACL1_uc011avu.1_Missense_Mutation_p.S459F|HACL1_uc010hep.2_Missense_Mutation_p.S300F	NM_012260	NP_036392	Q9UJ83	HACL1_HUMAN	2-hydroxyphytanoyl-CoA lyase	541					fatty acid alpha-oxidation	peroxisomal matrix	carbon-carbon lyase activity|identical protein binding|magnesium ion binding|thiamine pyrophosphate binding				0						TCTGCCTCAGGGATTTTTGGAG	0.446													13	12					0	0	0.004672	0	0
EFHB	151651	broad.mit.edu	37	3	19975238	19975238	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:19975238G>A	uc003cbl.3	-	1	469	c.273C>T	c.(271-273)GTC>GTT	p.V91V	EFHB_uc003cbm.2_Intron	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	91					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						AGACACTGTCGACTCCTAAAC	0.443													42	30					0	0	0.007835	0	0
NEK10	152110	broad.mit.edu	37	3	27326370	27326370	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:27326370G>A	uc003cdt.1	-	22	2146	c.1872C>T	c.(1870-1872)CAC>CAT	p.H624H	NEK10_uc003cds.1_Silent_p.H21H	NM_199347	NP_955379	Q6ZWH5	NEK10_HUMAN	NIMA-related kinase 10 isoform 3	624	Protein kinase.						ATP binding|metal ion binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(5)|stomach(2)|central_nervous_system(2)|lung(2)|skin(1)|pancreas(1)	13						CAGTAAAATGGTGATGTTTTT	0.323													20	12					0	0	0.001523	0	0
DLEC1	9940	broad.mit.edu	37	3	38104199	38104199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:38104199C>T	uc003cho.1	+	5	1022	c.1001C>T	c.(1000-1002)CCT>CTT	p.P334L	DLEC1_uc003chp.1_Missense_Mutation_p.P334L|DLEC1_uc010hgv.1_Missense_Mutation_p.P334L|DLEC1_uc010hgw.1_Missense_Mutation_p.P33L|DLEC1_uc003chq.1_RNA	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	334					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		CGTTTTTTTCCTCCTAACACT	0.473													25	29					0	0	0.003330	0	0
SCN10A	6336	broad.mit.edu	37	3	38743502	38743502	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:38743502C>T	uc003ciq.2	-	26	4485	c.4485G>A	c.(4483-4485)GTG>GTA	p.V1495V		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	1495	Helical; Name=S1 of repeat IV; (Potential).|IV.				sensory perception	voltage-gated sodium channel complex		p.V1495V(1)		ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	CATCAGTCTCCACCATCATGG	0.448													18	33					0	0	0.001216	0	0
SCN11A	11280	broad.mit.edu	37	3	38927620	38927620	+	Missense_Mutation	SNP	C	T	T	rs34292484		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:38927620C>T	uc011ays.1	-	16	3144	c.2945G>A	c.(2944-2946)CGA>CAA	p.R982Q	SCN11A_uc010hhn.1_Intron	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	982					response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	AATTACCTTTCGGGGATCCTG	0.448													16	37					0	0	0.001216	0	0
ULK4	54986	broad.mit.edu	37	3	41959954	41959954	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:41959954G>C	uc003ckv.3	-	7	923	c.722C>G	c.(721-723)CCG>CGG	p.P241R	ULK4_uc003ckw.2_Missense_Mutation_p.P241R|ULK4_uc003ckx.1_Missense_Mutation_p.P241R	NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	241	Protein kinase.						ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		CTTACCTTTCGGAATAGGTGG	0.318													18	50					0	0	0.001523	0	0
TRAK1	22906	broad.mit.edu	37	3	42265111	42265111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:42265111G>A	uc003cky.2	+	16	2960	c.2744G>A	c.(2743-2745)CGG>CAG	p.R915Q	TRAK1_uc011azi.1_Missense_Mutation_p.R894Q	NM_001042646	NP_001036111	Q9UPV9	TRAK1_HUMAN	OGT(O-Glc-NAc transferase)-interacting protein	915					endosome to lysosome transport|protein O-linked glycosylation|protein targeting|regulation of transcription from RNA polymerase II promoter	early endosome|mitochondrion|nucleus				ovary(1)	1						AGTGGCATCCGGCGGAATCGC	0.597													21	21					0	0	0.001216	0	0
CCDC13	152206	broad.mit.edu	37	3	42781285	42781285	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:42781285C>T	uc003cly.3	-	9	1089	c.1005G>A	c.(1003-1005)CGG>CGA	p.R335R		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	335	Potential.									ovary(1)	1						GGAGGACATCCCGTTCACTGG	0.522													21	39					0	0	0.001882	0	0
ZNF167	55888	broad.mit.edu	37	3	44607118	44607118	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:44607118G>A	uc010hin.2	+	3	951	c.563G>A	c.(562-564)GGG>GAG	p.G188E	ZNF167_uc003cnh.2_RNA|ZNF167_uc003cni.2_Missense_Mutation_p.G188E|ZNF167_uc010hio.2_Missense_Mutation_p.G38E|ZNF167_uc003cnj.2_Missense_Mutation_p.G188E|ZNF167_uc003cnk.2_Missense_Mutation_p.G188E	NM_018651	NP_061121	Q9P0L1	ZN167_HUMAN	zinc finger protein 167 isoform 1	188					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(197;0.0486)|Kidney(197;0.0609)		TATGACCCAGGGACACACCAC	0.572													17	27					0	0	0.004990	0	0
ZDHHC3	51304	broad.mit.edu	37	3	44986749	44986749	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:44986749G>A	uc003cod.2	-	3	616	c.342C>T	c.(340-342)TTC>TTT	p.F114F	ZDHHC3_uc003cog.2_Silent_p.F114F|ZDHHC3_uc011bad.1_Silent_p.F114F	NM_016598	NP_057682	Q9NYG2	ZDHC3_HUMAN	zinc finger, DHHC-type containing 3 isoform 2	114	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	zinc ion binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00943)|KIRC - Kidney renal clear cell carcinoma(197;0.053)|Kidney(197;0.0665)		AACTCTCGATGAATTCTTTAG	0.517													34	80					0	0	0.006230	0	0
PTH1R	5745	broad.mit.edu	37	3	46935487	46935487	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:46935487C>T	uc003cqm.2	+	4	369	c.166C>T	c.(166-168)CTG>TTG	p.L56L	PTH1R_uc003cqn.2_Silent_p.L56L	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	56	Extracellular (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						CAAGGAGGTCCTGCAGAGGCC	0.602									Ollier_disease_/_Maffuci_syndrome				8	19					0	0	0.006214	0	0
KIF9	64147	broad.mit.edu	37	3	47298994	47298994	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:47298994G>A	uc010hjp.2	-	11	1642	c.1038C>T	c.(1036-1038)ATC>ATT	p.I346I	KIF9_uc003cqx.2_Silent_p.I346I|KIF9_uc003cqy.2_Silent_p.I346I|KIF9_uc011bat.1_RNA|KIF9_uc011bau.1_RNA	NM_001134878	NP_001128350	Q9HAQ2	KIF9_HUMAN	kinesin family member 9 isoform 2	346	Potential.				blood coagulation|microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(1)	1		Acute lymphoblastic leukemia(5;0.164)		BRCA - Breast invasive adenocarcinoma(193;0.000284)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		ACTTTTCATTGATGGCAGGCT	0.507													30	48					0	0	0.006999	0	0
PTPN23	25930	broad.mit.edu	37	3	47447872	47447872	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:47447872C>T	uc003crf.1	+	7	700	c.604C>T	c.(604-606)CTG>TTG	p.L202L	PTPN23_uc011baw.1_Silent_p.L167L|PTPN23_uc011bax.1_RNA|PTPN23_uc011bay.1_Silent_p.L72L	NM_015466	NP_056281	Q9H3S7	PTN23_HUMAN	protein tyrosine phosphatase, non-receptor type	202	BRO1.				cilium morphogenesis	cilium|cytoplasmic membrane-bounded vesicle|microtubule basal body	protein tyrosine phosphatase activity			breast(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000271)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GAAGAGCTTTCTGGTGGCCCG	0.627													14	22					0	0	0.004990	0	0
SCAP	22937	broad.mit.edu	37	3	47460943	47460943	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:47460943C>T	uc003crh.1	-	13	2070	c.1815G>A	c.(1813-1815)GAG>GAA	p.E605E	SCAP_uc011baz.1_Silent_p.E350E|SCAP_uc003crg.2_Silent_p.E213E	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	605	Lumenal (By similarity).				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		CATGGACAACCTCTGCTGGAC	0.602													19	42					0	0	0.001882	0	0
GMPPB	29925	broad.mit.edu	37	3	49759664	49759664	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:49759664C>T	uc003cxk.1	-	7	993	c.768G>A	c.(766-768)GTG>GTA	p.V256V	AMIGO3_uc003cxj.2_5'Flank|GMPPB_uc003cxl.1_Silent_p.V256V	NM_021971	NP_068806	Q9Y5P6	GMPPB_HUMAN	GDP-mannose pyrophosphorylase B isoform 2	256					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine		GTP binding|mannose-1-phosphate guanylyltransferase activity				0				BRCA - Breast invasive adenocarcinoma(193;4.53e-05)|Kidney(197;0.00218)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)		AGGGCCTCACCACCAGCACGT	0.597													17	36					0	0	0.006122	0	0
SEMA3F	6405	broad.mit.edu	37	3	50224101	50224101	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:50224101C>T	uc003cyj.2	+	18	2067	c.1869C>T	c.(1867-1869)TTC>TTT	p.F623F	SEMA3F_uc003cyk.2_Silent_p.F592F	NM_004186	NP_004177	Q13275	SEM3F_HUMAN	semaphorin 3F precursor	623	Ig-like C2-type.				axon guidance	extracellular space|membrane	chemorepellent activity|receptor activity			lung(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(193;0.00013)|KIRC - Kidney renal clear cell carcinoma(197;0.00599)|Kidney(197;0.00688)		GCGCAGCCTTCCTTGAGTGCC	0.627													5	17					0	0	0.000602	0	0
DOCK3	1795	broad.mit.edu	37	3	51418527	51418527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:51418527G>A	uc011bds.1	+	53	5653	c.5630G>A	c.(5629-5631)GGT>GAT	p.G1877D		NM_004947	NP_004938	Q8IZD9	DOCK3_HUMAN	dedicator of cytokinesis 3	1877						cytoplasm	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.00105)|KIRC - Kidney renal clear cell carcinoma(197;0.00449)|Kidney(197;0.00518)		CCCCAGTCAGGTCTGGACGGC	0.617													19	30					0	0	0.003330	0	0
RRP9	9136	broad.mit.edu	37	3	51969227	51969227	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:51969227G>A	uc003dbw.1	-	11	1059	c.1020C>T	c.(1018-1020)TCC>TCT	p.S340S		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	340	WD 5.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		CGTCCGCGCCGGACACCATGT	0.592													16	37					0	0	0.007413	0	0
STAB1	23166	broad.mit.edu	37	3	52539146	52539146	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:52539146C>T	uc003dej.2	+	13	1579	c.1505C>T	c.(1504-1506)CCT>CTT	p.P502L	STAB1_uc003dei.1_Missense_Mutation_p.P502L	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	502	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		TCTGGGACCCCTGGGGATCCC	0.622													19	52					0	0	0.001882	0	0
ITIH1	3697	broad.mit.edu	37	3	52814382	52814383	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:52814382_52814383CC>TT	uc003dfs.2	+	6	695_696	c.671_672CC>TT	c.(670-672)TCC>TTT	p.S224F	ITIH1_uc010hmn.1_RNA|ITIH1_uc003dft.2_5'Flank	NM_002215	NP_002206	P19827	ITIH1_HUMAN	inter-alpha (globulin) inhibitor H1	224					hyaluronan metabolic process|leukocyte activation	extracellular region	calcium ion binding|serine-type endopeptidase inhibitor activity			ovary(3)	3				BRCA - Breast invasive adenocarcinoma(193;7.04e-05)|Kidney(197;0.000659)|KIRC - Kidney renal clear cell carcinoma(197;0.000795)|OV - Ovarian serous cystadenocarcinoma(275;0.0498)		ATCAAGAAGTCCTTCTCAGGAA	0.554													10	15					0	0	0.004672	0	0
RFT1	91869	broad.mit.edu	37	3	53133502	53133503	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:53133502_53133503CC>TT	uc003dgj.2	-	11	1157	c.1103_splice	c.e11-1	p.G368_splice	RFT1_uc003dgk.2_Splice_Site_p.G329_splice	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog						carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		CAAAACAGGACCTACAAGGAAA	0.5													7	18					0	0	0.004672	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54905578	54905578	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:54905578A>G	uc003dhf.2	+	18	1687	c.1639A>G	c.(1639-1641)AAA>GAA	p.K547E	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.K453E|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.K281E	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	547	Extracellular (Potential).|Cache.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		CGAAGAAGGAAAAAAGCGAAG	0.448													18	23					0	0	0.001216	0	0
ERC2	26059	broad.mit.edu	37	3	56330398	56330398	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:56330398G>A	uc003dhr.1	-	3	979	c.723C>T	c.(721-723)CTC>CTT	p.L241L		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	241	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CTTGCTGGAGGAGGTGGTTGA	0.567													21	39					0	0	0.001523	0	0
IL17RD	54756	broad.mit.edu	37	3	57131690	57131690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:57131690C>T	uc003dil.2	-	12	2130	c.2041G>A	c.(2041-2043)GGA>AGA	p.G681R	IL17RD_uc003dik.2_Missense_Mutation_p.G657R|IL17RD_uc010hna.2_Missense_Mutation_p.G537R|IL17RD_uc011bex.1_Missense_Mutation_p.G537R	NM_017563	NP_060033	Q8NFM7	I17RD_HUMAN	interleukin 17 receptor D precursor	681	Cytoplasmic (Potential).					Golgi membrane|integral to membrane|plasma membrane	receptor activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0173)|Kidney(284;0.0204)		GTCGAGAGTCCTTCCATCAGT	0.622													5	2					0	0	0.001984	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64627614	64627614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:64627614C>T	uc003dmg.2	-	12	1798	c.1766G>A	c.(1765-1767)GGA>GAA	p.G589E	ADAMTS9_uc011bfo.1_Missense_Mutation_p.G561E|ADAMTS9_uc003dmh.1_Missense_Mutation_p.G418E|ADAMTS9_uc003dmk.1_Missense_Mutation_p.G589E	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	589	TSP type-1 1.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		TCCCCAGGATCCATCTGTCAC	0.493													91	267					0	0	0.003610	0	0
ROBO1	6091	broad.mit.edu	37	3	78667166	78667166	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:78667166G>A	uc003dqe.2	-	27	4109	c.3901C>T	c.(3901-3903)CCA>TCA	p.P1301S	ROBO1_uc003dqb.2_Missense_Mutation_p.P1262S|ROBO1_uc003dqc.2_Missense_Mutation_p.P1201S|ROBO1_uc003dqd.2_Missense_Mutation_p.P1256S|ROBO1_uc010hoh.2_Missense_Mutation_p.P493S|ROBO1_uc011bgl.1_Missense_Mutation_p.P873S	NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1301	Cytoplasmic (Potential).				activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GGCCGTGGTGGTGGAGGAGGA	0.478													8	25					0	0	0.006214	0	0
EPHA3	2042	broad.mit.edu	37	3	89480431	89480431	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:89480431T>C	uc003dqy.2	+	13	2493	c.2268T>C	c.(2266-2268)AGT>AGC	p.S756S	EPHA3_uc010hon.1_RNA	NM_005233	NP_005224	P29320	EPHA3_HUMAN	ephrin receptor EphA3 isoform a precursor	756	Cytoplasmic (Potential).|Protein kinase.					extracellular region|integral to plasma membrane	ATP binding			lung(17)|ovary(7)|large_intestine(4)|central_nervous_system(2)|stomach(1)|skin(1)|pancreas(1)	33	all_cancers(8;0.0406)|Melanoma(1;0.00142)|all_epithelial(1;0.0612)	Lung NSC(201;0.0782)		LUSC - Lung squamous cell carcinoma(29;0.00344)|Lung(72;0.00942)		TGATCAACAGTAACTTGGTGT	0.478										TSP Lung(6;0.00050)			13	22					0	0	0.004007	0	0
OR5K4	403278	broad.mit.edu	37	3	98073321	98073321	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:98073321C>T	uc011bgv.1	+	1	624	c.624C>T	c.(622-624)ATC>ATT	p.I208I		NM_001005517	NP_001005517	A6NMS3	OR5K4_HUMAN	olfactory receptor, family 5, subfamily K,	208	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						CAATTCAAATCTTTACCATTG	0.343													15	16					0	0	0.004007	0	0
IMPG2	50939	broad.mit.edu	37	3	100961713	100961713	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:100961713C>T	uc003duq.1	-	14	3044	c.2841G>A	c.(2839-2841)CAG>CAA	p.Q947Q	IMPG2_uc011bhe.1_Silent_p.Q810Q	NM_016247	NP_057331	Q9BZV3	IMPG2_HUMAN	interphotoreceptor matrix proteoglycan 2	947	Extracellular (Potential).|SEA 2.				visual perception	integral to membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|heparin binding|hyaluronic acid binding|receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3						TTTCTAAGTTCTGGAACCCCG	0.423													12	26					0	0	0.001855	0	0
HHLA2	11148	broad.mit.edu	37	3	108072514	108072514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:108072514G>A	uc003dwy.3	+	4	472	c.305G>A	c.(304-306)GGG>GAG	p.G102E	HHLA2_uc011bhl.1_Intron|HHLA2_uc010hpu.2_Missense_Mutation_p.G102E|HHLA2_uc003dwz.2_Missense_Mutation_p.G102E	NM_007072	NP_009003	Q9UM44	HHLA2_HUMAN	HERV-H LTR-associating 2 precursor	102	Ig-like V-type 1.					integral to membrane				ovary(1)	1						ATTCAAAATGGGAATGCGTCG	0.398													12	23					0	0	0.001368	0	0
MYH15	22989	broad.mit.edu	37	3	108224661	108224661	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:108224661C>T	uc003dxa.1	-	3	221	c.164G>A	c.(163-165)TGG>TAG	p.W55*		NM_014981	NP_055796	Q9Y2K3	MYH15_HUMAN	myosin, heavy polypeptide 15	55	Myosin head-like.					myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(5)|central_nervous_system(2)	7						ATCAGGAATCCAGCATTTCTT	0.363													22	46					0	0	0.003954	0	0
PVRL3	25945	broad.mit.edu	37	3	110852704	110852704	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:110852704G>C	uc003dxt.1	+	6	1292	c.1292G>C	c.(1291-1293)AGA>ACA	p.R431T	PVRL3_uc003dxu.1_Intron	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	431	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						TATAGGAGAAGACGGACGTTT	0.413													37	58					0	0	0.003755	0	0
PVRL3	25945	broad.mit.edu	37	3	110852746	110852746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:110852746C>T	uc003dxt.1	+	6	1334	c.1334C>T	c.(1333-1335)CCA>CTA	p.P445L	PVRL3_uc003dxu.1_Intron	NM_015480	NP_056295	Q9NQS3	PVRL3_HUMAN	poliovirus receptor-related 3 precursor	445	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane	cell adhesion molecule binding|protein homodimerization activity			upper_aerodigestive_tract(2)	2						AACTACATTCCACCATCAGAT	0.388													23	33					0	0	0.002299	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111795735	111795735	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:111795735C>T	uc010hqb.2	+	14	1760	c.1590C>T	c.(1588-1590)CCC>CCT	p.P530P	TMPRSS7_uc011bhr.1_Silent_p.P385P	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	656	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						TGTCAGATCCCACACCATGGA	0.453													32	68					0	0	0.006230	0	0
CCDC80	151887	broad.mit.edu	37	3	112324500	112324500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:112324500C>T	uc003dzf.2	-	8	2835	c.2617G>A	c.(2617-2619)GGA>AGA	p.G873R	CCDC80_uc011bhv.1_Missense_Mutation_p.G846R|CCDC80_uc003dzg.2_Missense_Mutation_p.G873R	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	873										ovary(2)	2						TTGACATTTCCGTCTTTTCCG	0.448													11	29					0	0	0.000673	0	0
KIAA2018	205717	broad.mit.edu	37	3	113375371	113375371	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:113375371G>C	uc003eam.2	-	7	5569	c.5158C>G	c.(5158-5160)CGT>GGT	p.R1720G	KIAA2018_uc003eal.2_Missense_Mutation_p.R1664G	NM_001009899	NP_001009899	Q68DE3	K2018_HUMAN	hypothetical protein LOC205717	1720					regulation of transcription, DNA-dependent	membrane|nucleus	calcium ion binding|DNA binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(2)|ovary(1)	3						TGGTCCACACGACCCTGCATA	0.423													19	35					0	0	0.007413	0	0
QTRTD1	79691	broad.mit.edu	37	3	113795776	113795776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:113795776G>A	uc003eay.2	+	7	963	c.733G>A	c.(733-735)GAG>AAG	p.E245K	QTRTD1_uc003eaz.2_Missense_Mutation_p.E257K|QTRTD1_uc011biq.1_Missense_Mutation_p.E122K|QTRTD1_uc011bir.1_Missense_Mutation_p.E139K|QTRTD1_uc003eba.2_Missense_Mutation_p.E122K	NM_024638	NP_078914	Q9H974	QTRD1_HUMAN	queuine tRNA-ribosyltransferase domain	245					queuosine biosynthetic process	mitochondrion	metal ion binding|queuine tRNA-ribosyltransferase activity			central_nervous_system(1)|skin(1)	2						AGAGCTGCCGGAGGACAAGCC	0.542													8	21					0	0	0.003080	0	0
DRD3	1814	broad.mit.edu	37	3	113850117	113850117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:113850117G>A	uc003ebd.2	-	7	1277	c.854C>T	c.(853-855)TCC>TTC	p.S285F	DRD3_uc010hqn.1_Missense_Mutation_p.S285F|DRD3_uc003ebb.1_Missense_Mutation_p.S285F|DRD3_uc003ebc.1_Missense_Mutation_p.S285F	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	285	Cytoplasmic.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	GGGACTCAGGGAATTCCGAGT	0.527													53	97					0	0	0.003610	0	0
DRD3	1814	broad.mit.edu	37	3	113890711	113890711	+	Silent	SNP	G	A	A	rs143953030		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:113890711G>A	uc003ebd.2	-	3	552	c.129C>T	c.(127-129)ATC>ATT	p.I43I	DRD3_uc010hqn.1_Silent_p.I43I|DRD3_uc003ebb.1_Silent_p.I43I|DRD3_uc003ebc.1_Silent_p.I43I	NM_000796	NP_000787	P35462	DRD3_HUMAN	dopamine receptor D3 isoform a	43	Helical; Name=1.				activation of adenylate cyclase activity by dopamine receptor signaling pathway|arachidonic acid secretion|behavioral response to cocaine|cellular calcium ion homeostasis|circadian regulation of gene expression|G-protein coupled receptor internalization|inhibition of adenylate cyclase activity by dopamine receptor signaling pathway|locomotory behavior|musculoskeletal movement, spinal reflex action|negative regulation of blood pressure|negative regulation of oligodendrocyte differentiation|negative regulation of protein kinase B signaling cascade|negative regulation of protein secretion|positive regulation of dopamine receptor signaling pathway|positive regulation of mitosis|prepulse inhibition|regulation of dopamine secretion|response to drug|response to histamine|response to morphine|social behavior|visual learning	integral to plasma membrane	dopamine D3 receptor activity|drug binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4					Apomorphine(DB00714)|Chlorprothixene(DB01239)|Cocaine(DB00907)|Methotrimeprazine(DB01403)|Olanzapine(DB00334)|Pramipexole(DB00413)|Ropinirole(DB00268)|Ziprasidone(DB00246)	TGCCGAAGACGATGGCCAGGA	0.607													9	24					0	0	0.004482	0	0
ZNF80	7634	broad.mit.edu	37	3	113955368	113955368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:113955368C>T	uc010hqo.2	-	1	1058	c.554G>A	c.(553-555)GGA>GAA	p.G185E	ZNF80_uc003ebf.2_RNA	NM_007136	NP_009067	P51504	ZNF80_HUMAN	zinc finger protein 80	185						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Lung NSC(201;0.0233)|all_neural(597;0.0837)				GGGCTTCTCTCCAGTGTGAAT	0.493													29	64					0	0	0.002836	0	0
TIGIT	201633	broad.mit.edu	37	3	114026783	114026783	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:114026783G>A	uc003ebg.1	+	4	574	c.540G>A	c.(538-540)AGG>AGA	p.R180R		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	180	Cytoplasmic (Potential).				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						GTGACCTCAGGAGAAAATCAG	0.512													21	36					0	0	0.001882	0	0
ARGFX	503582	broad.mit.edu	37	3	121304943	121304943	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:121304943C>T	uc003eef.2	+	5	539	c.444C>T	c.(442-444)ATC>ATT	p.I148I		NM_001012659	NP_001012677	A6NJG6	ARGFX_HUMAN	arginine-fifty homeobox	148						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(114;0.152)		GAAACCAGATCCTTCCATCCA	0.502													13	27					0	0	0.001855	0	0
SEMA5B	54437	broad.mit.edu	37	3	122645474	122645475	+	Silent	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:122645474_122645475GG>AA	uc003efz.1	-	9	1204_1205	c.900_901CC>TT	c.(898-903)TTCCTG>TTTTTG	p.300_301FL>FL	SEMA5B_uc011bju.1_Silent_p.242_243FL>FL|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.300_301FL>FL|SEMA5B_uc010hro.1_Silent_p.242_243FL>FL|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	300_301	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		TTCTCCCGCAGGAAGAAGTATG	0.609													4	12					0	0	0.004672	0	0
KALRN	8997	broad.mit.edu	37	3	124385441	124385441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:124385441G>A	uc003ehg.2	+	46	6615	c.6488G>A	c.(6487-6489)GGA>GAA	p.G2163E	KALRN_uc003ehi.2_Missense_Mutation_p.G504E|KALRN_uc003ehk.2_Missense_Mutation_p.G466E|KALRN_uc011bjz.1_Missense_Mutation_p.G255E	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2162	PH 2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CTCAGGAAGGGATCCCTCACC	0.532													21	56					0	0	0.004656	0	0
SLC12A8	84561	broad.mit.edu	37	3	124826509	124826509	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:124826509C>T	uc003ehv.3	-	10	1632	c.1521G>A	c.(1519-1521)TTG>TTA	p.L507L	SLC12A8_uc003ehw.3_Silent_p.L536L|SLC12A8_uc003eht.3_Silent_p.L308L|SLC12A8_uc003ehu.3_Silent_p.L260L|SLC12A8_uc010hry.2_Silent_p.L260L	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	507					potassium ion transport	integral to membrane	symporter activity				0						ATTTGAGGTCCAAGAGGAAGC	0.562													34	52					0	0	0.003271	0	0
SLC12A8	84561	broad.mit.edu	37	3	124837628	124837628	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:124837628G>A	uc003ehv.3	-	8	1008	c.897C>T	c.(895-897)TTC>TTT	p.F299F	SLC12A8_uc003ehw.3_Silent_p.F328F|SLC12A8_uc010hrz.1_Missense_Mutation_p.S173F|SLC12A8_uc003eht.3_Silent_p.F100F|SLC12A8_uc003ehu.3_Silent_p.F52F|SLC12A8_uc010hry.2_Silent_p.F52F	NM_024628	NP_078904	A0AV02	S12A8_HUMAN	solute carrier family 12, member 8	299					potassium ion transport	integral to membrane	symporter activity				0						CCGCTATCAGGAAGTCATAGC	0.532													6	7					0	0	0.001984	0	0
ZNF148	7707	broad.mit.edu	37	3	124952458	124952458	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:124952458G>A	uc003ehx.3	-	9	1598	c.1112C>T	c.(1111-1113)TCG>TTG	p.S371L	SLC12A8_uc003ehw.3_Intron|ZNF148_uc003ehz.3_Missense_Mutation_p.S371L|ZNF148_uc010hsa.2_Missense_Mutation_p.S371L|ZNF148_uc003eia.3_Missense_Mutation_p.S371L|ZNF148_uc003ehy.2_Intron	NM_021964	NP_068799	Q9UQR1	ZN148_HUMAN	zinc finger protein 148	371					cellular defense response|negative regulation of transcription from RNA polymerase II promoter|transcription from RNA polymerase II promoter	Golgi apparatus|nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4						CCCAACTGACGAATGTGGCAT	0.363													26	33					0	0	0.004656	0	0
CNBP	7555	broad.mit.edu	37	3	128889945	128889945	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:128889945G>A	uc003elq.3	-	4	599	c.393C>T	c.(391-393)GAC>GAT	p.D131D	CNBP_uc003elr.3_Silent_p.D124D|CNBP_uc011bku.1_Silent_p.D114D	NM_003418	NP_003409	P62633	CNBP_HUMAN	zinc finger protein 9 isoform 3	131	CCHC-type 5.				cholesterol biosynthetic process	endoplasmic reticulum	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						CTTTGGTGCAGTCTTTTTGAA	0.433													19	17					0	0	0.003330	0	0
COL29A1	256076	broad.mit.edu	37	3	130095498	130095498	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:130095498G>A	uc010htj.1	+	3	980	c.486G>A	c.(484-486)GTG>GTA	p.V162V	COL29A1_uc010hti.1_RNA	NM_153264	NP_694996	A8TX70	CO6A5_HUMAN	collagen, type XXIX, alpha 1	162	Nonhelical region.|VWFA 1.				axon guidance|cell adhesion	collagen					0						AAGACGGGGTGAAAATTATCT	0.507													5	7					0	0	0.001168	0	0
COL6A6	131873	broad.mit.edu	37	3	130284201	130284201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:130284201G>A	uc010htl.2	+	3	1056	c.1025G>A	c.(1024-1026)CGA>CAA	p.R342Q		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	342	Nonhelical region.|VWFA 2.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						GTGACCCACCGAGATTCAGAA	0.562													29	78					0	0	0.002836	0	0
COL6A6	131873	broad.mit.edu	37	3	130354588	130354588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:130354588G>A	uc010htl.2	+	27	5105	c.5074G>A	c.(5074-5076)GGA>AGA	p.G1692R	COL6A6_uc003eni.3_5'UTR	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1692	Triple-helical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						TGGGCTGAAGGGAGCTAGAGG	0.383													9	14					0	0	0.000978	0	0
DNAJC13	23317	broad.mit.edu	37	3	132222072	132222072	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:132222072C>T	uc003eor.2	+	41	4796	c.4731C>T	c.(4729-4731)AGC>AGT	p.S1577S		NM_015268	NP_056083	O75165	DJC13_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 13	1577							heat shock protein binding			ovary(1)|breast(1)	2						TAGCAAACAGCCTTGCCAAAC	0.373													8	27					0	0	0.004482	0	0
PCCB	5096	broad.mit.edu	37	3	136048787	136048787	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:136048787C>T	uc003eqy.1	+	15	1590	c.1539C>T	c.(1537-1539)GCC>GCT	p.A513A	PCCB_uc003eqz.1_Silent_p.A513A|PCCB_uc011bmc.1_Silent_p.A533A	NM_000532	NP_000523	P05166	PCCB_HUMAN	propionyl Coenzyme A carboxylase, beta	513	Carboxyltransferase.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|propionyl-CoA carboxylase activity				0					Biotin(DB00121)|L-Valine(DB00161)	CCACACGTGCCCGAATCTGCT	0.468													19	44					0	0	0.001882	0	0
ATR	545	broad.mit.edu	37	3	142217461	142217461	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:142217461G>A	uc003eux.3	-	32	5658	c.5536C>T	c.(5536-5538)CGA>TGA	p.R1846*		NM_001184	NP_001175	Q13535	ATR_HUMAN	ataxia telangiectasia and Rad3 related protein	1846	FAT.				cell cycle|cellular response to gamma radiation|cellular response to UV|DNA damage checkpoint|DNA repair|DNA replication|multicellular organismal development|negative regulation of DNA replication|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|protein autophosphorylation|replicative senescence	PML body	ATP binding|DNA binding|MutLalpha complex binding|MutSalpha complex binding|protein serine/threonine kinase activity			lung(5)|skin(5)|breast(4)|ovary(3)|stomach(1)|central_nervous_system(1)|liver(1)	20						TCATATCCTCGTTGGTAGGAG	0.343								Other_conserved_DNA_damage_response_genes					6	20					0	0	0.001984	0	0
ZIC4	84107	broad.mit.edu	37	3	147120535	147120535	+	Missense_Mutation	SNP	C	T	T	rs148365070	by1000genomes	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:147120535C>T	uc003ewd.1	-	2	323	c.50G>A	c.(49-51)CGA>CAA	p.R17Q	ZIC4_uc011bno.1_Missense_Mutation_p.R67Q	NM_032153	NP_115529	Q8N9L1	ZIC4_HUMAN	zinc finger protein of the cerebellum 4	17						nucleus	DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|central_nervous_system(1)	2						AAGAGTGTTTCGGTAAAGCCG	0.323													23	70					0	0	0.005443	0	0
IGSF10	285313	broad.mit.edu	37	3	151165454	151165454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:151165454C>T	uc011bod.1	-	4	2315	c.2315G>A	c.(2314-2316)CGA>CAA	p.R772Q		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	772					cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			GGTATTTTCTCGCTTGTCTGG	0.507													17	30					0	0	0.004007	0	0
GPR149	344758	broad.mit.edu	37	3	154056017	154056017	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:154056017C>T	uc003faa.2	-	4	1767	c.1667G>A	c.(1666-1668)GGG>GAG	p.G556E		NM_001038705	NP_001033794	Q86SP6	GP149_HUMAN	G protein-coupled receptor 149	556	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(6)	6			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			AGACACAGTCCCCTGGAATGC	0.448													34	61					0	0	0.002836	0	0
SI	6476	broad.mit.edu	37	3	164786619	164786619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:164786619C>T	uc003fei.2	-	5	436	c.374G>A	c.(373-375)GGA>GAA	p.G125E		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	125	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GGCTTCAACTCCTTAAAGAAT	0.303										HNSCC(35;0.089)			23	34					0	0	0.003330	0	0
PHC3	80012	broad.mit.edu	37	3	169846497	169846497	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:169846497G>A	uc010hws.1	-	8	1791	c.1727C>T	c.(1726-1728)CCA>CTA	p.P576L	PHC3_uc003fgl.2_Missense_Mutation_p.P588L|PHC3_uc011bpq.1_Missense_Mutation_p.P535L|PHC3_uc011bpr.1_Missense_Mutation_p.P502L	NM_024947	NP_079223	Q8NDX5	PHC3_HUMAN	polyhomeotic like 3	576	Pro-rich.				multicellular organismal development	PcG protein complex	DNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2	all_cancers(22;2.67e-22)|all_epithelial(15;4.73e-27)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.0655)			AGGTGCTGGTGGTTGCACTTG	0.453													13	20					0	0	0.001368	0	0
FNDC3B	64778	broad.mit.edu	37	3	172048392	172048393	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:172048392_172048393CC>AT	uc003fhy.2	+	13	1613_1614	c.1441_1442CC>AT	c.(1441-1443)CCA>ATA	p.P481I	FNDC3B_uc003fhz.3_Missense_Mutation_p.P481I|FNDC3B_uc003fia.2_Missense_Mutation_p.P412I	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	481	Fibronectin type-III 3.			P -> L (in Ref. 2; AAQ88513).		endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		GCCTTCTGCACCAAGGCTGGTT	0.495													11	33					0	0	0.004672	0	0
GNB4	59345	broad.mit.edu	37	3	179123136	179123136	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:179123136A>C	uc003fjv.3	-	9	1038	c.758T>G	c.(757-759)TTT>TGT	p.F253C	GNB4_uc003fju.3_Intron	NM_021629	NP_067642	Q9HAV0	GBB4_HUMAN	guanine nucleotide-binding protein, beta-4	253	WD 5.				cellular response to glucagon stimulus|energy reserve metabolic process	plasma membrane	signal transducer activity			skin(2)	2	all_cancers(143;2.01e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.0169)|BRCA - Breast invasive adenocarcinoma(182;0.237)			ACGAAGGTCAAAGAGCCGGCA	0.418													6	18					0	0	0.001168	0	0
PEX5L	51555	broad.mit.edu	37	3	179525587	179525587	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:179525587G>A	uc003fki.1	-	14	1681	c.1551C>T	c.(1549-1551)ACC>ACT	p.T517T	PEX5L_uc011bqd.1_Silent_p.T474T|PEX5L_uc011bqe.1_Silent_p.T325T|PEX5L_uc011bqf.1_Silent_p.T409T|PEX5L_uc003fkj.1_Silent_p.T482T|PEX5L_uc010hxd.1_Silent_p.T515T|PEX5L_uc011bqg.1_Silent_p.T493T|PEX5L_uc011bqh.1_Silent_p.T458T	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	517	TPR 4.				protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			CGTTCGCCAAGGTCGCCCCGA	0.512													39	74					0	0	0.002222	0	0
CHRD	8646	broad.mit.edu	37	3	184106458	184106458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:184106458C>T	uc003fov.2	+	21	2884	c.2638C>T	c.(2638-2640)CCA>TCA	p.P880S	CHRD_uc003fow.2_Missense_Mutation_p.P510S|CHRD_uc003fox.2_Missense_Mutation_p.P880S|CHRD_uc003foy.2_Missense_Mutation_p.P510S|CHRD_uc010hyc.2_Missense_Mutation_p.P470S|CHRD_uc011brr.1_Missense_Mutation_p.P422S	NM_003741	NP_003732	Q9H2X0	CHRD_HUMAN	chordin precursor	880	VWFC 4.				BMP signaling pathway involved in spinal cord dorsal/ventral patterning|floor plate development|negative regulation of BMP signaling pathway|negative regulation of cell migration|positive regulation of cell adhesion|skeletal system development	extracellular space	cytokine binding			skin(2)|ovary(1)	3	all_cancers(143;6.33e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GCAGTGGTTCCCAGAGAGTCA	0.637													20	54					0	0	0.002299	0	0
IGF2BP2	10644	broad.mit.edu	37	3	185407217	185407217	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:185407217G>A	uc003fpo.2	-	6	682	c.603C>T	c.(601-603)CCC>CCT	p.P201P	IGF2BP2_uc010hyi.2_Silent_p.P144P|IGF2BP2_uc010hyj.2_Silent_p.P138P|IGF2BP2_uc010hyk.2_Silent_p.P65P|IGF2BP2_uc010hyl.2_Silent_p.P138P|IGF2BP2_uc003fpp.2_Silent_p.P201P|IGF2BP2_uc003fpq.2_Silent_p.P206P	NM_006548	NP_006539	Q9Y6M1	IF2B2_HUMAN	insulin-like growth factor 2 mRNA binding	201	KH 1.				anatomical structure morphogenesis|negative regulation of translation	cytoskeletal part|cytosol|nucleus	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity				0	all_cancers(143;5.84e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;7.41e-21)			CAAACTGGGTGGGGACCAGGA	0.607													68	167					0	0	0.003610	0	0
ETV5	2119	broad.mit.edu	37	3	185823650	185823650	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:185823650C>T	uc003fpz.2	-	2	255	c.8G>A	c.(7-9)GGG>GAG	p.G3E	ETV5_uc003fpy.2_Missense_Mutation_p.G45E	NM_004454	NP_004445	P41161	ETV5_HUMAN	ets variant gene 5 (ets-related molecule)	3					cellular response to oxidative stress	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|skin(2)|breast(1)	5	all_cancers(143;4.06e-12)|Ovarian(172;0.0386)|Breast(254;0.247)		OV - Ovarian serous cystadenocarcinoma(80;1.62e-24)			ATCATAAAACCCGTCCATGGT	0.448			T	TMPRSS2|SCL45A3	Prostate 								9	26					0	0	0.000673	0	0
MASP1	5648	broad.mit.edu	37	3	186940961	186940961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:186940961C>T	uc003frh.1	-	14	2095	c.1763G>A	c.(1762-1764)GGC>GAC	p.G588D		NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	588	Peptidase S1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CTTCCCCCAGCCGCTGACGAT	0.537													16	41					0	0	0.001216	0	0
BCL6	604	broad.mit.edu	37	3	187446313	187446313	+	Missense_Mutation	SNP	G	A	A	rs137878288	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:187446313G>A	uc003frp.3	-	6	1832	c.1375C>T	c.(1375-1377)CGC>TGC	p.R459C	BCL6_uc011bsf.1_Missense_Mutation_p.R459C|BCL6_uc010hza.2_Missense_Mutation_p.R357C|BCL6_uc003frq.1_Missense_Mutation_p.R459C	NM_001130845	NP_001124317	P41182	BCL6_HUMAN	B-cell lymphoma 6 protein isoform 1	459					negative regulation of B cell apoptosis|negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|positive regulation of apoptosis|protein import into nucleus, translocation|regulation of germinal center formation|response to DNA damage stimulus	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|lung(2)|central_nervous_system(1)	5	all_cancers(143;9.45e-12)|Ovarian(172;0.0418)		OV - Ovarian serous cystadenocarcinoma(80;1.76e-18)	GBM - Glioblastoma multiforme(93;0.0141)		CTGCTGCTGCGGGGAGAGCCC	0.622			T|Mis	IG loci|ZNFN1A1|LCP1|PIM1|TFRC|MHC2TA|NACA|HSPCB|HSPCA|HIST1H4I|IL21R| POU2AF1|ARHH|EIF4A2|SFRS3	NHL|CLL								14	38					0	0	0.003163	0	0
LEPREL1	55214	broad.mit.edu	37	3	189712072	189712072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:189712072C>T	uc011bsk.1	-	3	1022	c.634G>A	c.(634-636)GAG>AAG	p.E212K	LEPREL1_uc003fsg.2_Missense_Mutation_p.E31K	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	212	TPR 3.				collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TTGTAACTCTCCTGTAATGAA	0.318													4	20					0	0	0.000602	0	0
ATP13A5	344905	broad.mit.edu	37	3	193032821	193032821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr3:193032821C>T	uc011bsq.1	-	18	2098	c.2098G>A	c.(2098-2100)GAA>AAA	p.E700K		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	700					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		AGTTTGGTTTCTTTTTTCAAG	0.383													20	63					0	0	0.001216	0	0
MAEA	10296	broad.mit.edu	37	4	1332318	1332318	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:1332318C>T	uc003gda.2	+	8	1038	c.1008C>T	c.(1006-1008)TCC>TCT	p.S336S	MAEA_uc003gdb.2_Silent_p.S295S|MAEA_uc011bvb.1_Silent_p.S268S|MAEA_uc003gdc.2_Silent_p.S268S|MAEA_uc003gdd.2_RNA|MAEA_uc011bvc.1_Silent_p.S335S|MAEA_uc011bvd.1_Silent_p.S288S|MAEA_uc010ibt.2_Silent_p.S109S|MAEA_uc010ibu.2_RNA	NM_001017405	NP_001017405	Q7L5Y9	MAEA_HUMAN	macrophage erythroblast attacher isoform 1	336					cell adhesion|cell cycle|cell division|erythrocyte maturation|negative regulation of myeloid cell apoptosis|regulation of mitotic cell cycle	actomyosin contractile ring|integral to plasma membrane|membrane fraction|nuclear matrix|spindle	actin binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(23;0.0201)			GTGCCAACTCCCGCCTGGTCT	0.622													6	15					0	0	0.001984	0	0
RGS12	6002	broad.mit.edu	37	4	3318983	3318983	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:3318983G>A	uc003ggw.2	+	2	1990	c.1086G>A	c.(1084-1086)GAG>GAA	p.E362E	RGS12_uc003ggu.2_Silent_p.E362E|RGS12_uc010ics.1_Intron|RGS12_uc011bvr.1_RNA|RGS12_uc003ggv.2_Silent_p.E362E|RGS12_uc003ggx.1_Silent_p.E362E	NM_198229	NP_937872	O14924	RGS12_HUMAN	regulator of G-protein signalling 12 isoform 1	362						condensed nuclear chromosome|cytoplasm|plasma membrane	GTPase activator activity|receptor signaling protein activity			skin(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		TTGGGTTTGAGTGCACGGCCG	0.592													17	43					0	0	0.004990	0	0
GPR78	27201	broad.mit.edu	37	4	8584315	8584315	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:8584315G>A	uc003glk.2	+	2	1145	c.726G>A	c.(724-726)AAG>AAA	p.K242K	CPZ_uc003gll.2_RNA	NM_080819	NP_543009	Q96P69	GPR78_HUMAN	G protein-coupled receptor 78	242	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity	p.K242N(1)		central_nervous_system(4)|ovary(2)	6						CCACCAGGAAGATTGGCATTG	0.627													22	51					0	0	0.005443	0	0
SLIT2	9353	broad.mit.edu	37	4	20599938	20599938	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:20599938C>T	uc003gpr.1	+	33	3816	c.3612C>T	c.(3610-3612)GAC>GAT	p.D1204D	SLIT2_uc003gps.1_Silent_p.D1196D	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1204	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						GTGACAAAGACCATATCGCGG	0.493													38	70					0	0	0.004289	0	0
SLIT2	9353	broad.mit.edu	37	4	20611732	20611732	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:20611732C>T	uc003gpr.1	+	34	3993	c.3789C>T	c.(3787-3789)ATC>ATT	p.I1263I	SLIT2_uc003gps.1_Silent_p.I1255I	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1263	Laminin G-like.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						ACCCCAAAATCATCACTAACT	0.453													11	19					0	0	0.000978	0	0
ANAPC4	29945	broad.mit.edu	37	4	25398357	25398357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:25398357C>T	uc003gro.2	+	15	1262	c.1133C>T	c.(1132-1134)CCT>CTT	p.P378L	ANAPC4_uc003grp.2_Missense_Mutation_p.P263L|ANAPC4_uc010iet.1_Missense_Mutation_p.P158L|ANAPC4_uc010ieu.1_Missense_Mutation_p.P147L	NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	378					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				AAATATGAACCTCTTGGACTA	0.333													14	34					0	0	0.001855	0	0
KLHL5	51088	broad.mit.edu	37	4	39083653	39083653	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:39083653G>A	uc003gts.2	+	4	987	c.912G>A	c.(910-912)CAG>CAA	p.Q304Q	KLHL5_uc003gtp.2_Silent_p.Q258Q|KLHL5_uc003gtq.2_Silent_p.Q117Q|KLHL5_uc003gtr.1_Silent_p.Q304Q|KLHL5_uc003gtt.2_Silent_p.Q243Q	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	304						cytoplasm|cytoskeleton	actin binding			ovary(1)	1						AGCTTTCACAGGTTGTAGAAG	0.383													24	44					0	0	0.002299	0	0
KLB	152831	broad.mit.edu	37	4	39439414	39439414	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:39439414G>A	uc003gua.2	+	3	1501	c.1404G>A	c.(1402-1404)TGG>TGA	p.W468*	KLB_uc011byj.1_Nonsense_Mutation_p.W468*	NM_175737	NP_783864	Q86Z14	KLOTB_HUMAN	klotho beta	468	Extracellular (Potential).|Glycosyl hydrolase-1 1.				carbohydrate metabolic process	integral to membrane|plasma membrane	cation binding|fibroblast growth factor binding|hydrolase activity, hydrolyzing O-glycosyl compounds			skin(1)	1						GCTTTGAATGGCAGGATGCTT	0.418													27	49					0	0	0.005443	0	0
CHRNA9	55584	broad.mit.edu	37	4	40351209	40351209	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:40351209G>A	uc003gva.1	+	4	692	c.676G>A	c.(676-678)GAT>AAT	p.D226N		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	226	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	GCCTTACCCGGATGTCACATT	0.502													101	174					0	0	0.003610	0	0
ATP8A1	10396	broad.mit.edu	37	4	42558049	42558049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:42558049G>A	uc003gwr.2	-	16	1581	c.1349C>T	c.(1348-1350)TCA>TTA	p.S450L	ATP8A1_uc003gws.2_Missense_Mutation_p.S435L|ATP8A1_uc011byz.1_Missense_Mutation_p.S435L	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	450	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	TCCAAACTGTGAGTTCTGCCT	0.328													7	12					0	0	0.001984	0	0
GABRA2	2555	broad.mit.edu	37	4	46307625	46307625	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:46307625C>T	uc003gxc.3	-	6	1336	c.663G>A	c.(661-663)CTG>CTA	p.L221L	GABRA2_uc010igc.2_Silent_p.L221L|GABRA2_uc011bzc.1_Silent_p.L166L|GABRA2_uc003gxe.2_Silent_p.L221L	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	221	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TTGATTGGCCCAGCAGGTCAT	0.368													19	40					0	0	0.001216	0	0
LRRC66	339977	broad.mit.edu	37	4	52860601	52860601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:52860601G>A	uc003gzi.2	-	4	2600	c.2587C>T	c.(2587-2589)CCC>TCC	p.P863S		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	863						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						GGATCTGAGGGAACTTCAGCA	0.378													20	22					0	0	0.002299	0	0
SPATA18	132671	broad.mit.edu	37	4	52946055	52946055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:52946055G>A	uc003gzl.2	+	9	1603	c.1325G>A	c.(1324-1326)GGA>GAA	p.G442E	SPATA18_uc010igl.1_RNA|SPATA18_uc011bzq.1_Missense_Mutation_p.G410E|SPATA18_uc003gzk.1_Missense_Mutation_p.G442E	NM_145263	NP_660306	Q8TC71	MIEAP_HUMAN	spermatogenesis associated 18 homolog	442					mitochondrial protein catabolic process|mitochondrion degradation by induced vacuole formation|response to DNA damage stimulus	mitochondrial outer membrane	protein binding			ovary(2)|skin(2)	4			GBM - Glioblastoma multiforme(4;1.77e-13)|LUSC - Lung squamous cell carcinoma(32;0.00204)			ATTGCATATGGAGCAGATGGA	0.418													48	87					0	0	0.003610	0	0
PDGFRA	5156	broad.mit.edu	37	4	55139777	55139777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:55139777G>A	uc003han.3	+	10	1769	c.1438G>A	c.(1438-1440)GAC>AAC	p.D480N	PDGFRA_uc003haa.2_Intron|PDGFRA_uc010igq.1_Missense_Mutation_p.D374N|PDGFRA_uc003ham.2_RNA	NM_006206	NP_006197	P16234	PGFRA_HUMAN	platelet-derived growth factor receptor alpha	480	Ig-like C2-type 5.|Extracellular (Potential).				cardiac myofibril assembly|cell activation|luteinization|metanephric glomerular capillary formation|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of DNA replication|positive regulation of fibroblast proliferation|protein autophosphorylation|retina vasculature development in camera-type eye	cytoplasm|integral to plasma membrane|nucleus	ATP binding|platelet-derived growth factor alpha-receptor activity|platelet-derived growth factor binding|platelet-derived growth factor receptor binding|protein homodimerization activity|vascular endothelial growth factor receptor activity	p.D480E(1)		soft_tissue(572)|small_intestine(40)|stomach(16)|lung(16)|central_nervous_system(13)|haematopoietic_and_lymphoid_tissue(7)|skin(3)|ovary(3)|gastrointestinal_tract_(site_indeterminate)(1)|autonomic_ganglia(1)|prostate(1)|bone(1)	674	all_cancers(7;0.000425)|all_lung(4;0.000343)|Lung NSC(11;0.000467)|all_epithelial(27;0.0131)|all_neural(26;0.0209)|Glioma(25;0.08)		GBM - Glioblastoma multiforme(1;4.18e-71)|all cancers(1;4.76e-45)|LUSC - Lung squamous cell carcinoma(32;0.00256)		Becaplermin(DB00102)|Imatinib(DB00619)|Sunitinib(DB01268)	CCACTCCCGAGACAGGAGTAC	0.498			Mis|O|T	FIP1L1	GIST|idiopathic hypereosinophilic syndrome				Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Intestinal_Neurofibromatosis	TSP Lung(21;0.16)			23	34					0	0	0.004656	0	0
LPHN3	23284	broad.mit.edu	37	4	62897274	62897274	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:62897274C>T	uc010ihh.2	+	20	3506	c.3333C>T	c.(3331-3333)TTC>TTT	p.F1111F	LPHN3_uc003hcq.3_Silent_p.F1111F|LPHN3_uc003hct.2_Silent_p.F495F	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1089	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TCACCATTTTCAATTCTCTAC	0.348													25	40					0	0	0.003954	0	0
LPHN3	23284	broad.mit.edu	37	4	62935858	62935858	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:62935858T>C	uc010ihh.2	+	23	3815	c.3642T>C	c.(3640-3642)AGT>AGC	p.S1214S	LPHN3_uc003hcq.3_Missense_Mutation_p.C1232R|LPHN3_uc003hct.2_Silent_p.S598S	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1192	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						GGGATACAAGTGTCATGGATA	0.433													26	35					0	0	0.002096	0	0
UGT2B7	7364	broad.mit.edu	37	4	69972974	69972974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:69972974C>T	uc003heg.3	+	4	1130	c.1084C>T	c.(1084-1086)CTT>TTT	p.L362F	UGT2B7_uc010ihq.2_Missense_Mutation_p.L362F	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	362					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						CCAGAATGACCTTCTAGGTAA	0.348													23	46					0	0	0.003954	0	0
UGT2B11	10720	broad.mit.edu	37	4	70074168	70074168	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:70074168T>G	uc003heh.2	-	3	912	c.903A>C	c.(901-903)GAA>GAC	p.E301D	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	301					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						CAACACCATTTTCTCCAGAGC	0.423													30	72					0	0	0.003755	0	0
AFP	174	broad.mit.edu	37	4	74310740	74310740	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:74310740C>T	uc003hgz.1	+	7	791	c.744C>T	c.(742-744)ACC>ACT	p.T248T	AFP_uc003hha.1_Silent_p.T248T|AFP_uc011cbg.1_Silent_p.T22T	NM_001134	NP_001125	P02771	FETA_HUMAN	alpha-fetoprotein precursor	248	Albumin 2.				transport		metal ion binding			ovary(1)	1	Breast(15;0.00102)		Epithelial(6;2.42e-05)|all cancers(17;0.000268)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			AGAAGTTTACCAAAGTTAATT	0.358									Alpha-Fetoprotein_Hereditary_Persistence_of				11	14					0	0	0.000978	0	0
PARM1	25849	broad.mit.edu	37	4	75971446	75971446	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:75971446G>A	uc003hih.1	+	4	1162	c.922G>A	c.(922-924)GAT>AAT	p.D308N		NM_015393	NP_056208	Q6UWI2	PARM1_HUMAN	prostatic androgen-repressed message-1	308	Cytoplasmic (Potential).				positive regulation of telomerase activity	early endosome|endosome membrane|Golgi membrane|integral to membrane|late endosome|plasma membrane				ovary(1)	1						CCCTCTGTACGATGACTCCTA	0.438													9	16					0	0	0.006214	0	0
SHROOM3	57619	broad.mit.edu	37	4	77660467	77660467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:77660467G>A	uc011cbx.1	+	5	2094	c.1141G>A	c.(1141-1143)GGT>AGT	p.G381S	SHROOM3_uc011cbz.1_Missense_Mutation_p.G205S|SHROOM3_uc003hkf.1_Missense_Mutation_p.G256S|SHROOM3_uc003hkg.2_Missense_Mutation_p.G159S	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	381					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TCCTAAGGTGGGTGCACCCCT	0.617													20	22					0	0	0.007413	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661507	77661507	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:77661507G>A	uc011cbx.1	+	5	3134	c.2181G>A	c.(2179-2181)GGG>GGA	p.G727G	SHROOM3_uc011cbz.1_Silent_p.G551G|SHROOM3_uc003hkf.1_Silent_p.G602G|SHROOM3_uc003hkg.2_Silent_p.G505G	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	727					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			GGCCCGAGGGGAGGACCGGTG	0.672													12	38					0	0	0.002450	0	0
SHROOM3	57619	broad.mit.edu	37	4	77675821	77675821	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:77675821C>T	uc011cbx.1	+	7	5138	c.4185C>T	c.(4183-4185)ACC>ACT	p.T1395T	SHROOM3_uc003hkg.2_Silent_p.T1173T	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	1395					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			ACACCCTGACCCAGCCTCCCG	0.627													4	12					0	0	0.000248	0	0
NAA11	84779	broad.mit.edu	37	4	80246948	80246948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:80246948C>T	uc003hlt.3	-	1	224	c.84G>A	c.(82-84)ATG>ATA	p.M28I		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	28	Interaction with NAA15 (By similarity).|N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						AATAGTATTTCATCTGGTAGT	0.493													19	31					0	0	0.001523	0	0
GK2	2712	broad.mit.edu	37	4	80329289	80329289	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:80329289G>A	uc003hlu.2	-	1	84	c.66C>T	c.(64-66)TCC>TCT	p.S22S		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	22					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						GAAAGCGAGTGGAGTTGGTGC	0.532													9	15					0	0	0.006214	0	0
ANTXR2	118429	broad.mit.edu	37	4	80952847	80952847	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:80952847C>T	uc003hlz.3	-	10	1560	c.797_splice	c.e10-1	p.S266_splice	ANTXR2_uc003hly.3_Splice_Site_p.S266_splice|ANTXR2_uc003hlx.1_Splice_Site|ANTXR2_uc010ijn.2_Intron	NM_001145794	NP_001139266	P58335	ANTR2_HUMAN	anthrax toxin receptor 2 isoform 2							endoplasmic reticulum membrane|extracellular region|integral to membrane|plasma membrane	metal ion binding|protein binding|receptor activity			ovary(1)	1						GGTTTTACACCTAGAAAATAA	0.318									Juvenile_Hyaline_Fibromatosis				3	6					0	0	0.000248	0	0
MAPK10	5602	broad.mit.edu	37	4	87115524	87115524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:87115524C>T	uc003hpq.2	-	2	98	c.31G>A	c.(31-33)GAA>AAA	p.E11K	MAPK10_uc010ikg.2_5'UTR|MAPK10_uc003hpr.2_5'UTR|MAPK10_uc003hps.2_Missense_Mutation_p.E11K|MAPK10_uc003hpt.2_Missense_Mutation_p.E11K|MAPK10_uc003hpu.2_Missense_Mutation_p.E11K|MAPK10_uc003hpv.2_5'UTR|MAPK10_uc010ikh.1_RNA|uc003hpw.2_Intron	NM_138982	NP_620448	P53779	MK10_HUMAN	mitogen-activated protein kinase 10 isoform 2	11					innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|regulation of sequence-specific DNA binding transcription factor activity|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|JUN kinase activity|MAP kinase kinase activity|protein binding			stomach(1)|breast(1)|central_nervous_system(1)	3		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.243)		OV - Ovarian serous cystadenocarcinoma(123;0.002)		AATGTTGGTTCACTGCAGTAG	0.333													45	120					0	0	0.003610	0	0
SPARCL1	8404	broad.mit.edu	37	4	88411474	88411474	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:88411474C>T	uc010ikm.2	-	8	2054	c.1482G>A	c.(1480-1482)GGG>GGA	p.G494G	SPARCL1_uc011cdc.1_Silent_p.G369G|SPARCL1_uc003hqs.3_Silent_p.G494G|SPARCL1_uc011cdd.1_Silent_p.G369G	NM_001128310	NP_001121782	Q14515	SPRL1_HUMAN	SPARC-like 1 precursor	494	Kazal-like.				signal transduction	extracellular space|proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.00118)		CCTTTTTGGTCCCCTCCAGTC	0.458													85	173					0	0	0.003610	0	0
HERC5	51191	broad.mit.edu	37	4	89390350	89390350	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:89390350G>A	uc003hrt.2	+	9	1330	c.1177G>A	c.(1177-1179)GAA>AAA	p.E393K	HERC5_uc011cdm.1_Missense_Mutation_p.E31K	NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	393					innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		TACTCTGAATGAAGGGACTGT	0.398													6	13					0	0	0.001984	0	0
GPRIN3	285513	broad.mit.edu	37	4	90171112	90171112	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:90171112G>A	uc003hsm.1	-	2	669	c.150C>T	c.(148-150)GCC>GCT	p.A50A		NM_198281	NP_938022	Q6ZVF9	GRIN3_HUMAN	G protein-regulated inducer of neurite outgrowth	50										ovary(3)	3		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;5.67e-05)		GTTCTGCAGGGGCACCTGAAA	0.567													17	42					0	0	0.004007	0	0
SNCA	6622	broad.mit.edu	37	4	90647782	90647783	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:90647782_90647783GG>AA	uc003hsq.2	-	6	678_679	c.419_420CC>TT	c.(418-420)GCC>GTT	p.A140V	SNCA_uc010ikt.2_Missense_Mutation_p.A126V|SNCA_uc003hso.2_Missense_Mutation_p.A112V|SNCA_uc003hsp.2_Missense_Mutation_p.A140V|SNCA_uc003hsr.2_Missense_Mutation_p.A140V	NM_001146054	NP_001139526	P37840	SYUA_HUMAN	alpha-synuclein isoform NACP140	140					activation of caspase activity|anti-apoptosis|negative regulation of dopamine uptake|negative regulation of exocytosis|negative regulation of histone acetylation|negative regulation of microtubule polymerization|negative regulation of monooxygenase activity|negative regulation of norepinephrine uptake|negative regulation of platelet-derived growth factor receptor signaling pathway|negative regulation of serotonin uptake|negative regulation of thrombin receptor signaling pathway|negative regulation of transporter activity|positive regulation of endocytosis|positive regulation of inositol phosphate biosynthetic process|positive regulation of peptidyl-serine phosphorylation|positive regulation of protein serine/threonine kinase activity|positive regulation of receptor recycling|positive regulation of release of sequestered calcium ion into cytosol|receptor internalization|regulation of phospholipase activity|response to interferon-gamma|response to interleukin-1|response to iron(II) ion|response to lipopolysaccharide|response to magnesium ion|synaptic vesicle endocytosis	actin cytoskeleton|axon|cell cortex|cell junction|cytosol|fibril|growth cone|nucleus|synapse	alpha-tubulin binding|calcium ion binding|caspase inhibitor activity|dynein binding|ferrous iron binding|histone binding|Hsp70 protein binding|kinesin binding|magnesium ion binding|phosphoprotein binding|tau protein binding|zinc ion binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;7.42e-05)	Melatonin(DB01065)	ATATTTCTTAGGCTTCAGGTTC	0.401													15	41					0	0	0.004672	0	0
PDHA2	5161	broad.mit.edu	37	4	96762042	96762042	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:96762042C>T	uc003htr.3	+	1	804	c.741C>T	c.(739-741)ATC>ATT	p.I247I		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	247					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	GCAATTTTATCCCTGGGCTAA	0.453													25	34					0	0	0.003330	0	0
NHEDC1	150159	broad.mit.edu	37	4	103822358	103822358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:103822358C>T	uc003hww.2	-	12	1586	c.1464G>A	c.(1462-1464)ATG>ATA	p.M488I	NHEDC1_uc003hwu.2_Intron|NHEDC1_uc010ilm.2_Intron|NHEDC1_uc003hwv.2_Intron|NHEDC1_uc011cev.1_Missense_Mutation_p.M261I	NM_139173	NP_631912	Q4ZJI4	NHDC1_HUMAN	Na+/H+ exchanger domain containing 1 isoform 1	488	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity			ovary(1)|skin(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;1.5e-08)		CCAGAATGCCCATAAGTAGAG	0.418													6	153					0	0	0.003080	0	0
CCDC109B	55013	broad.mit.edu	37	4	110585478	110585478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:110585478G>A	uc011cfs.1	+	4	518	c.379G>A	c.(379-381)GAT>AAT	p.D127N	CCDC109B_uc010imf.2_Missense_Mutation_p.D127N	NM_017918	NP_060388	Q9NWR8	C109B_HUMAN	coiled-coil domain containing 109B	127						integral to membrane					0				OV - Ovarian serous cystadenocarcinoma(123;6.65e-06)		TACCTTGATGGATATTTTGCT	0.333													4	13					0	0	0.000602	0	0
ENPEP	2028	broad.mit.edu	37	4	111397743	111397743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:111397743C>T	uc003iab.3	+	1	515	c.173C>T	c.(172-174)TCC>TTC	p.S58F		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	58	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CCAGCTCCTTCCCACCTGCCT	0.632													33	52					0	0	0.002445	0	0
ANK2	287	broad.mit.edu	37	4	114279687	114279687	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:114279687C>T	uc003ibe.3	+	38	10013	c.9913C>T	c.(9913-9915)CCT>TCT	p.P3305S	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.P607S|ANK2_uc011cgb.1_Missense_Mutation_p.P3320S	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3272					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		ATCCAAAATTCCTGTAAGGAC	0.428													23	60					0	0	0.006320	0	0
UGT8	7368	broad.mit.edu	37	4	115544111	115544111	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:115544111C>T	uc003ibs.2	+	2	597	c.75C>T	c.(73-75)ATC>ATT	p.I25I	UGT8_uc003ibt.2_Silent_p.I25I|UGT8_uc011cge.1_RNA	NM_001128174	NP_001121646	Q16880	CGT_HUMAN	UDP-galactose-ceramide galactosyltransferase 8	25					central nervous system development|peripheral nervous system development	integral to membrane	2-hydroxyacylsphingosine 1-beta-galactosyltransferase activity|UDP-galactose:glucosylceramide beta-1,4-galactosyltransferase activity			ovary(1)|skin(1)	2		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000632)		AAATCATCATCGTGCCGCCAA	0.453													8	21					0	0	0.004482	0	0
SYNPO2	171024	broad.mit.edu	37	4	119948008	119948008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:119948008C>T	uc003icm.3	+	3	680	c.484C>T	c.(484-486)CCG>TCG	p.P162S	SYNPO2_uc010ina.2_Missense_Mutation_p.P162S|SYNPO2_uc010inb.2_Missense_Mutation_p.P162S|SYNPO2_uc011cgh.1_Intron|SYNPO2_uc010inc.2_Missense_Mutation_p.P90S	NM_001128933	NP_001122405	Q9UMS6	SYNP2_HUMAN	synaptopodin 2 isoform b	162						nucleus|Z disc	14-3-3 protein binding|actin binding|muscle alpha-actinin binding			ovary(2)	2						AGAAACAGGCCCGAGCTACCA	0.552													8	16					0	0	0.003080	0	0
ANXA5	308	broad.mit.edu	37	4	122593728	122593728	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:122593728G>A	uc003idu.3	-	8	655	c.585C>T	c.(583-585)ATC>ATT	p.I195I	ANXA5_uc003idv.3_Silent_p.I195I|ANXA5_uc003idw.3_RNA|ANXA5_uc010inm.2_Silent_p.I195I|ANXA5_uc010inn.2_Silent_p.I135I|ANXA5_uc010ino.2_Silent_p.I95I	NM_001154	NP_001145	P08758	ANXA5_HUMAN	annexin 5	195	Annexin 3.				anti-apoptosis|blood coagulation|negative regulation of coagulation|signal transduction	cytoplasm	calcium ion binding|calcium-dependent phospholipid binding|phospholipase inhibitor activity			ovary(1)	1						CAAAGATGGTGATAAACTTTT	0.373													9	33					0	0	0.006214	0	0
KIAA1109	84162	broad.mit.edu	37	4	123230543	123230543	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:123230543C>T	uc003ieh.2	+	57	10221	c.10176C>T	c.(10174-10176)ATC>ATT	p.I3392I	KIAA1109_uc003iel.1_Silent_p.I1327I	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	3392					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						ACTTTTGTATCCGTTTTGCTG	0.383													16	56					0	0	0.006122	0	0
SPRY1	10252	broad.mit.edu	37	4	124323681	124323681	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:124323681C>T	uc003ifa.2	+	2	1123	c.935C>T	c.(934-936)TCC>TTC	p.S312F	SPRY1_uc003ifb.2_Missense_Mutation_p.S312F	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	312					epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						AGCTGCCCCTCCCGGGGTCAG	0.453													28	50					0	0	0.002096	0	0
FAT4	79633	broad.mit.edu	37	4	126369957	126369957	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:126369957G>A	uc003ifj.3	+	9	7786	c.7786G>A	c.(7786-7788)GGA>AGA	p.G2596R	FAT4_uc011cgp.1_Missense_Mutation_p.G894R|FAT4_uc003ifi.1_Missense_Mutation_p.G74R	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	2596	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CTCTTTAAGAGGAGAACCTAT	0.289													4	13					0	0	0.000248	0	0
PCDH10	57575	broad.mit.edu	37	4	134071348	134071348	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:134071348C>T	uc003iha.2	+	1	879	c.53C>T	c.(52-54)TCC>TTC	p.S18F	uc003igy.2_5'Flank|PCDH10_uc003igz.2_Missense_Mutation_p.S18F	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	18					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GGAGTCTTTTCCCAGCTTCAC	0.498													34	61					0	0	0.004878	0	0
PCDH10	57575	broad.mit.edu	37	4	134073473	134073473	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:134073473C>T	uc003iha.2	+	1	3004	c.2178C>T	c.(2176-2178)TCC>TCT	p.S726S	PCDH10_uc003igz.2_Silent_p.S726S	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	726	Helical; (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		GCTCGGTGTCCTTCATCTTCC	0.567													12	32					0	0	0.002450	0	0
MMAA	166785	broad.mit.edu	37	4	146560724	146560724	+	Nonsense_Mutation	SNP	C	T	T	rs104893851	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:146560724C>T	uc003ikh.3	+	2	518	c.433C>T	c.(433-435)CGA>TGA	p.R145*	MMAA_uc003ikg.2_Nonsense_Mutation_p.R145*|MMAA_uc003iki.1_RNA|MMAA_uc010iow.2_RNA	NM_172250	NP_758454	Q8IVH4	MMAA_HUMAN	methylmalonic aciduria type A precursor	145			R -> Q (in MMAA).			mitochondrion	GTP binding|nucleoside-triphosphatase activity			ovary(1)	1	all_hematologic(180;0.151)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	ACTAGCATTTCGAGTAGGTCA	0.323													5	14					0	0	0.001984	0	0
EDNRA	1909	broad.mit.edu	37	4	148453693	148453693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:148453693G>A	uc003iky.2	+	4	1276	c.584G>A	c.(583-585)GGA>GAA	p.G195E	EDNRA_uc011cid.1_5'UTR|EDNRA_uc010ipe.1_Silent_p.G152G|EDNRA_uc010ipf.1_Intron|EDNRA_uc010ipg.1_Intron	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	195	Cytoplasmic (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	CGTGTTCAGGGAATTGGGATT	0.418													31	65					0	0	0.002836	0	0
PRSS48	345062	broad.mit.edu	37	4	152204438	152204439	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:152204438_152204439GG>AA	uc011cif.1	+	4	651	c.651_splice	c.e4+1	p.K217_splice	PRSS48_uc011cig.1_Splice_Site_p.K74_splice	NM_183375	NP_899231	Q7RTY5	PRS48_HUMAN	epidermis-specific serine protease-like protein						proteolysis	extracellular region	serine-type endopeptidase activity			large_intestine(1)	1						ATAGTTGCAAGGTCAGGGTTTG	0.337													11	46					0	0	0.004672	0	0
FHDC1	85462	broad.mit.edu	37	4	153896077	153896077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:153896077C>T	uc003inf.2	+	11	1709	c.1634C>T	c.(1633-1635)CCC>CTC	p.P545L		NM_033393	NP_203751	Q9C0D6	FHDC1_HUMAN	FH2 domain containing 1	545					actin cytoskeleton organization		actin binding			large_intestine(1)|ovary(1)	2	all_hematologic(180;0.093)					TCCCTGGGTCCCTCTGCTGAC	0.706													5	13					0	0	0.001168	0	0
PLRG1	5356	broad.mit.edu	37	4	155467365	155467365	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:155467365C>T	uc003iny.2	-	5	377	c.314G>A	c.(313-315)GGG>GAG	p.G105E	PLRG1_uc003inz.2_Missense_Mutation_p.G96E|PLRG1_uc011cil.1_Intron	NM_002669	NP_002660	O43660	PLRG1_HUMAN	pleiotropic regulator 1 (PRL1 homolog,	105						catalytic step 2 spliceosome|nuclear speck	protein binding|signal transducer activity|transcription corepressor activity				0	all_hematologic(180;0.215)	Renal(120;0.0854)				CAAAGCAACCCCTATTAAAAT	0.348													7	15					0	0	0.003080	0	0
TDO2	6999	broad.mit.edu	37	4	156839358	156839358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:156839358C>T	uc003ipf.1	+	11	1098	c.1034C>T	c.(1033-1035)TCC>TTC	p.S345F		NM_005651	NP_005642	P48775	T23O_HUMAN	tryptophan 2,3-dioxygenase	345					tryptophan catabolic process to kynurenine	cytosol	tryptophan 2,3-dioxygenase activity				0	all_hematologic(180;0.24)	Renal(120;0.0854)		KIRC - Kidney renal clear cell carcinoma(143;0.0455)|Kidney(143;0.0568)|COAD - Colon adenocarcinoma(41;0.141)	L-Tryptophan(DB00150)	ACCGGTGGTTCCTCAGGCTAT	0.468													10	25					0	0	0.001855	0	0
NPY1R	4886	broad.mit.edu	37	4	164246624	164246624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:164246624C>T	uc003iqm.1	-	3	1252	c.986G>A	c.(985-987)AGA>AAA	p.R329K	NPY1R_uc011cjj.1_Missense_Mutation_p.R86K	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	329	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CTGCAAGTCTCTCTGGAAGTT	0.423													22	42					0	0	0.003330	0	0
TKTL2	84076	broad.mit.edu	37	4	164393683	164393683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:164393683C>T	uc003iqp.3	-	1	1365	c.1204G>A	c.(1204-1206)GAT>AAT	p.D402N		NM_032136	NP_115512	Q9H0I9	TKTL2_HUMAN	transketolase-like 2	402						cytoplasm	metal ion binding|transketolase activity			ovary(2)|skin(2)|pancreas(1)	5	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CGGAGCTGATCGAATGCTCTA	0.488													12	21					0	0	0.000978	0	0
TLL1	7092	broad.mit.edu	37	4	166963230	166963230	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:166963230G>A	uc003irh.1	+	11	1960	c.1313G>A	c.(1312-1314)AGA>AAA	p.R438K	TLL1_uc011cjn.1_Missense_Mutation_p.R438K|TLL1_uc011cjo.1_Missense_Mutation_p.R262K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	438	CUB 1.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ACAGACAGCAGAATGTGGATT	0.368													12	56					0	0	0.004007	0	0
DDX60	55601	broad.mit.edu	37	4	169206650	169206650	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:169206650C>T	uc003irp.2	-	11	1632	c.1340_splice	c.e11-1	p.D447_splice		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60								ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		TTGGAGCTGTCTGTAAACAAA	0.294													9	11					0	0	0.004482	0	0
GLRA3	8001	broad.mit.edu	37	4	175598335	175598335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:175598335G>A	uc003ity.1	-	7	1324	c.821C>T	c.(820-822)TCA>TTA	p.S274L	GLRA3_uc003itz.1_Missense_Mutation_p.S274L	NM_006529	NP_006520	O75311	GLRA3_HUMAN	glycine receptor, alpha 3 isoform a	274	Helical; (Probable).				synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(3)	3		Prostate(90;0.00601)|Breast(14;0.0091)|Melanoma(52;0.00959)|Renal(120;0.0183)|all_neural(102;0.0891)|all_hematologic(60;0.107)		all cancers(43;4.99e-18)|Epithelial(43;1.18e-16)|OV - Ovarian serous cystadenocarcinoma(60;5.88e-09)|STAD - Stomach adenocarcinoma(60;0.00442)|GBM - Glioblastoma multiforme(59;0.0102)|LUSC - Lung squamous cell carcinoma(193;0.0421)	Glycine(DB00145)	GATCCAGAATGAAACCCAGGA	0.478													8	17					0	0	0.006214	0	0
ODZ3	55714	broad.mit.edu	37	4	183601743	183601743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:183601743C>T	uc003ivd.1	+	9	1724	c.1687C>T	c.(1687-1689)CGC>TGC	p.R563C	ODZ3_uc003ive.1_5'UTR	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	563	Extracellular (Potential).|EGF-like 2.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		CTCCAAGGGCCGCTGCCTGTG	0.557													17	42					0	0	0.001523	0	0
ODZ3	55714	broad.mit.edu	37	4	183694726	183694726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:183694726C>T	uc003ivd.1	+	22	5031	c.4994C>T	c.(4993-4995)TCA>TTA	p.S1665L		NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1665	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		GACATTGAGTCATCTAGCCGA	0.438													27	64					0	0	0.006320	0	0
ACSL1	2180	broad.mit.edu	37	4	185687120	185687120	+	Silent	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:185687120G>T	uc003iww.2	-	14	1578	c.1284C>A	c.(1282-1284)GTC>GTA	p.V428V	ACSL1_uc011ckm.1_Silent_p.V257V|ACSL1_uc003iwt.1_Silent_p.V428V|ACSL1_uc003iwu.1_Silent_p.V428V|ACSL1_uc011ckn.1_Silent_p.V394V|ACSL1_uc003iws.1_5'UTR	NM_001995	NP_001986	P33121	ACSL1_HUMAN	acyl-CoA synthetase long-chain family member 1	428	Cytoplasmic (Potential).				digestion|fatty acid metabolic process|long-chain fatty-acyl-CoA biosynthetic process|regulation of fatty acid oxidation|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial outer membrane|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity			ovary(2)	2		all_lung(41;7.57e-14)|Lung NSC(41;1.81e-13)|Colorectal(36;0.00172)|Hepatocellular(41;0.00826)|Renal(120;0.00988)|Prostate(90;0.0235)|all_hematologic(60;0.0315)|all_neural(102;0.107)|Medulloblastoma(177;0.146)		all cancers(43;1.33e-28)|Epithelial(43;5.3e-25)|OV - Ovarian serous cystadenocarcinoma(60;4.88e-11)|Colorectal(24;3.59e-06)|STAD - Stomach adenocarcinoma(60;2.72e-05)|GBM - Glioblastoma multiforme(59;2.83e-05)|BRCA - Breast invasive adenocarcinoma(30;7.66e-05)|COAD - Colon adenocarcinoma(29;0.000538)|LUSC - Lung squamous cell carcinoma(40;0.008)|READ - Rectum adenocarcinoma(43;0.0419)	Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	CCATCAGCCGGACTCTTCCGC	0.652													13	31					2.32078e-09	2.81893e-09	0.003163	1	0
SORBS2	8470	broad.mit.edu	37	4	186544450	186544450	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr4:186544450C>T	uc003iyl.2	-	13	2979	c.2121G>A	c.(2119-2121)CGG>CGA	p.R707R	SORBS2_uc003iyh.2_Intron|SORBS2_uc011ckw.1_Intron|SORBS2_uc003iyi.2_Intron|SORBS2_uc011ckx.1_Intron|SORBS2_uc003iyk.2_Intron|SORBS2_uc003iym.2_Silent_p.R807R|SORBS2_uc003iyn.1_Intron|SORBS2_uc011cku.1_Intron|SORBS2_uc011ckv.1_Silent_p.R611R|SORBS2_uc003iyd.2_Intron|SORBS2_uc003iye.2_Intron|SORBS2_uc003iya.2_Intron|SORBS2_uc003iyb.2_Intron|SORBS2_uc003iyc.2_Intron|SORBS2_uc003iyg.2_Silent_p.R821R|SORBS2_uc003iyf.2_Intron|SORBS2_uc003iyo.1_Intron	NM_021069	NP_066547	O94875	SRBS2_HUMAN	sorbin and SH3 domain containing 2 isoform 2	707						actin cytoskeleton|nucleus|perinuclear region of cytoplasm|Z disc	cytoskeletal adaptor activity|structural constituent of cytoskeleton|structural constituent of muscle|zinc ion binding			ovary(1)	1		all_cancers(14;4.27e-52)|all_epithelial(14;6.58e-39)|all_lung(41;1.42e-13)|Lung NSC(41;3.73e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00692)|Hepatocellular(41;0.00826)|Renal(120;0.00994)|Prostate(90;0.0101)|all_hematologic(60;0.0174)|all_neural(102;0.244)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-09)|BRCA - Breast invasive adenocarcinoma(30;0.000232)|GBM - Glioblastoma multiforme(59;0.000385)|STAD - Stomach adenocarcinoma(60;0.00109)|LUSC - Lung squamous cell carcinoma(40;0.0205)		TTTTTTTCCTCCGGAAAGGCA	0.468													46	90					0	0	0.003610	0	0
SLC6A18	348932	broad.mit.edu	37	5	1232888	1232888	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:1232888C>T	uc003jby.1	+	3	447	c.324C>T	c.(322-324)TCC>TCT	p.S108S		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	108	Helical; Name=3; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCACGCTGTCCTTCCTGATCA	0.622													14	38					0	0	0.001855	0	0
SLC6A3	6531	broad.mit.edu	37	5	1403047	1403047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:1403047G>A	uc003jck.2	-	13	1878	c.1757C>T	c.(1756-1758)TCC>TTC	p.S586F		NM_001044	NP_001035	Q01959	SC6A3_HUMAN	solute carrier family 6 (neurotransmitter	586	Cytoplasmic (Potential).|Interaction with TGFB1I1.				cell death|neurotransmitter biosynthetic process	axon|cytoplasm|integral to plasma membrane|neuronal cell body				ovary(3)|breast(2)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(19;0.00928)|all cancers(22;0.0262)		Amphetamine(DB00182)|Benztropine(DB00245)|Bupropion(DB01156)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dextroamphetamine(DB01576)|Diethylpropion(DB00937)|Duloxetine(DB00476)|Fencamfamine(DB01463)|Mazindol(DB00579)|Methylphenidate(DB00422)|Modafinil(DB00745)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Procaine(DB00721)	CTCTCGAAAGGACCCAGGCAG	0.642													7	10					0	0	0.006214	0	0
DNAH5	1767	broad.mit.edu	37	5	13807809	13807809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:13807809C>T	uc003jfd.2	-	47	7820	c.7778G>A	c.(7777-7779)GGA>GAA	p.G2593E		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	2593	AAA 3 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTTGGCTGTTCCTTGTTCACC	0.279									Kartagener_syndrome				5	5					0	0	0.003080	0	0
RNASEN	29102	broad.mit.edu	37	5	31405818	31405818	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:31405818C>T	uc003jhg.2	-	34	4319	c.3960G>A	c.(3958-3960)GCG>GCA	p.A1320A	RNASEN_uc003jhh.2_Silent_p.A1283A	NM_013235	NP_037367	Q9NRR4	RNC_HUMAN	ribonuclease III, nuclear isoform 1	1320	Necessary for interaction with DGCR8 and pri-miRNA processing activity.|DRBM.				gene silencing by RNA|ribosome biogenesis|RNA processing	nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity				0						CTCCCATTTCCGCTTGCTGAA	0.264													4	2					0	0	0.001168	0	0
NIPBL	25836	broad.mit.edu	37	5	36976077	36976077	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:36976077T>C	uc003jkl.3	+	9	1567	c.1068T>C	c.(1066-1068)ACT>ACC	p.T356T	NIPBL_uc003jkk.3_Silent_p.T356T|NIPBL_uc003jkm.1_Silent_p.T235T	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	356					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			AGGACTCTACTAAACTTACAT	0.363													16	17					0	0	0.006122	0	0
EGFLAM	133584	broad.mit.edu	37	5	38370428	38370428	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:38370428C>T	uc003jlc.1	+	6	900	c.576C>T	c.(574-576)ATC>ATT	p.I192I	EGFLAM_uc003jlb.1_Silent_p.I192I	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	192	Fibronectin type-III 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGACCTCAATCCATGAGCGGA	0.488													21	8					0	0	0.003330	0	0
RICTOR	253260	broad.mit.edu	37	5	38950766	38950766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:38950766G>A	uc003jlp.2	-	31	3208	c.3184C>T	c.(3184-3186)CTT>TTT	p.L1062F	RICTOR_uc003jlo.2_Missense_Mutation_p.L1062F|RICTOR_uc010ivf.2_Missense_Mutation_p.L777F	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	1062					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					TTGATATCAAGGAAAAATGTG	0.348													30	28					0	0	0.002096	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64537968	64537968	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:64537968G>A	uc003jtp.2	-	15	2710	c.1896C>T	c.(1894-1896)TTC>TTT	p.F632F	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA|ADAMTS6_uc003jtr.1_Silent_p.F253F	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	632					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		ACTTTCCTCGGAAAGGCATAT	0.368													21	16					0	0	0.006320	0	0
PPWD1	23398	broad.mit.edu	37	5	64878967	64878967	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:64878967G>A	uc003jtv.3	+	8	1460	c.1453G>A	c.(1453-1455)GAA>AAA	p.E485K	PPWD1_uc011cqv.1_Missense_Mutation_p.E455K|PPWD1_uc011cqw.1_Missense_Mutation_p.E329K	NM_015342	NP_056157	Q96BP3	PPWD1_HUMAN	peptidylprolyl isomerase domain and WD repeat	485					protein folding	catalytic step 2 spliceosome	peptidyl-prolyl cis-trans isomerase activity			ovary(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		Lung(70;0.00451)		TACTCAAGCTGAAGGACCTAA	0.403													26	24					0	0	0.003954	0	0
PIK3R1	5295	broad.mit.edu	37	5	67589197	67589197	+	Silent	SNP	A	T	T	rs149905863		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:67589197A>T	uc003jva.2	+	10	1745	c.1185A>T	c.(1183-1185)CCA>CCT	p.P395P	PIK3R1_uc003jvb.2_Silent_p.P395P|PIK3R1_uc003jvc.2_Silent_p.P95P|PIK3R1_uc003jvd.2_Silent_p.P125P|PIK3R1_uc003jve.2_Silent_p.P74P|PIK3R1_uc011crb.1_Silent_p.P65P	NM_181523	NP_852664	P27986	P85A_HUMAN	phosphoinositide-3-kinase, regulatory subunit 1	395	SH2 1.				epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|growth hormone receptor signaling pathway|insulin receptor signaling pathway|insulin-like growth factor receptor signaling pathway|interspecies interaction between organisms|leukocyte migration|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|T cell costimulation|T cell receptor signaling pathway	1-phosphatidylinositol-4-phosphate 3-kinase, class IA complex	1-phosphatidylinositol binding|ErbB-3 class receptor binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase regulator activity|protein phosphatase binding	p.?(1)		endometrium(34)|central_nervous_system(27)|large_intestine(20)|breast(7)|ovary(5)|haematopoietic_and_lymphoid_tissue(3)|lung(2)|urinary_tract(1)|skin(1)|pancreas(1)	101		Lung NSC(167;1.99e-05)|Prostate(74;0.00308)|Ovarian(174;0.00473)|Colorectal(97;0.0176)		OV - Ovarian serous cystadenocarcinoma(47;3.76e-51)|Lung(70;0.0211)	Isoproterenol(DB01064)	TCTCTGACCCATTAACCTTCA	0.318			Mis|F|O		gliobastoma|ovarian|colorectal					TCGA GBM(4;<1E-08)			10	8					0	0	0.000673	0	0
BDP1	55814	broad.mit.edu	37	5	70828250	70828250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:70828250C>T	uc003kbp.1	+	26	6151	c.5888C>T	c.(5887-5889)CCG>CTG	p.P1963L	BDP1_uc003kbo.2_Missense_Mutation_p.P1963L|BDP1_uc003kbq.1_RNA|BDP1_uc003kbr.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1963					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		TTGAGTGTACCGTTTGTAAGC	0.343													8	13					0	0	0.004482	0	0
GPR98	84059	broad.mit.edu	37	5	89953728	89953728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:89953728G>A	uc003kju.2	+	21	4481	c.4385G>A	c.(4384-4386)GGG>GAG	p.G1462E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1462	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TCAGGTCCTGGGATACTGAGA	0.393													14	19					0	0	0.003163	0	0
MCTP1	79772	broad.mit.edu	37	5	94230531	94230531	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:94230531G>A	uc003kkx.2	-	11	1662	c.1662C>T	c.(1660-1662)GTC>GTT	p.V554V	MCTP1_uc003kkv.2_Silent_p.V333V|MCTP1_uc003kkw.2_Silent_p.V287V|MCTP1_uc003kkz.2_Silent_p.V215V|MCTP1_uc003kku.2_Silent_p.V70V	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	554					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		CTGACAGGTCGACCTGGCACC	0.468													12	5					0	0	0.001368	0	0
PCSK1	5122	broad.mit.edu	37	5	95730586	95730586	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:95730586C>T	uc003kls.1	-	13	2072	c.1866G>A	c.(1864-1866)AAG>AAA	p.K622K	PCSK1_uc010jbi.1_Silent_p.K312K	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	622					cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GATCCACCATCTTCTCCACCC	0.502													27	17					0	0	0.001786	0	0
TMED7-TICAM2	100302736	broad.mit.edu	37	5	114916925	114916925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:114916925G>A	uc003krd.2	-	4	1035	c.29C>T	c.(28-30)TCC>TTC	p.S10F	TMED7-TICAM2_uc003kre.2_Intron|TICAM2_uc003krc.2_Missense_Mutation_p.S10F	NM_021649	NP_067681	Q86XR7	TCAM2_HUMAN	toll-like receptor adaptor molecule 2	10				S->A: No effect on phosphorylation and on the ability to activate IRF3 or NF-kappa- B.	I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	Golgi apparatus|intrinsic to membrane|plasma membrane	protein binding|transmembrane receptor activity				0						AAGAGGGCAGGAATTTATTTT	0.373													22	20					0	0	0.003330	0	0
KLHL3	26249	broad.mit.edu	37	5	137028034	137028034	+	Missense_Mutation	SNP	G	A	A	rs139384947		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:137028034G>A	uc010jek.2	-	5	910	c.466C>T	c.(466-468)CGT>TGT	p.R156C	KLHL3_uc003lbr.3_Missense_Mutation_p.R74C|KLHL3_uc011cyd.1_RNA|MYOT_uc011cye.1_Intron|KLHL3_uc010jem.1_Missense_Mutation_p.R116C|KLHL3_uc010jen.1_RNA|KLHL3_uc003lbs.1_Missense_Mutation_p.R24C	NM_017415	NP_059111	Q9UH77	KLHL3_HUMAN	kelch-like 3	156						cytoplasm|cytoskeleton	actin binding|structural molecule activity				0		all_hematologic(541;3.67e-07)|Breast(839;7.61e-05)|Prostate(281;0.000825)|Ovarian(839;0.0481)|all_lung(232;0.198)	KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)	GBM - Glioblastoma multiforme(465;0.0223)		GCAAATGCACGGATGCCCAGG	0.587													9	5					0	0	0.004482	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207808	140207808	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140207808C>T	uc003lho.2	+	1	159	c.132C>T	c.(130-132)TTC>TTT	p.F44F	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.F44F|PCDHA6_uc011dab.1_Silent_p.F44F	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	44	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACGGCACCTTCGTGGGCCGGA	0.662													26	26					0	0	0.004656	0	0
PCDHA11	56138	broad.mit.edu	37	5	140249597	140249597	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140249597C>T	uc003lia.2	+	1	1767	c.909C>T	c.(907-909)GTC>GTT	p.V303V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Silent_p.V303V	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	303	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAGTGAGGGTCAATGGAACTT	0.393													11	8					0	0	0.000978	0	0
PCDHA11	56138	broad.mit.edu	37	5	140250862	140250862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140250862C>T	uc003lia.2	+	1	3032	c.2174C>T	c.(2173-2175)ACG>ATG	p.T725M	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc011dae.1_Missense_Mutation_p.T725M	NM_018902	NP_061725	Q9Y5I1	PCDAB_HUMAN	protocadherin alpha 11 isoform 1 precursor	725	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGTCGGCAACGCCCACTGAG	0.667													10	8					0	0	0.006214	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255750	140255750	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140255750C>T	uc003lic.2	+	1	820	c.693C>T	c.(691-693)ACC>ACT	p.T231T	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Silent_p.T231T	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	231	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TTCAAATAACCGTCCTGGATG	0.423													19	15					0	0	0.001216	0	0
PCDHA12	56137	broad.mit.edu	37	5	140256181	140256181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140256181C>T	uc003lic.2	+	1	1251	c.1124C>T	c.(1123-1125)TCG>TTG	p.S375L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.S375L	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	375	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTAGCGTGTCGGATCGTGAC	0.512													18	18					0	0	0.007413	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307491	140307491	+	Silent	SNP	C	T	T	rs116016831	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140307491C>T	uc003lih.2	+	1	1190	c.1014C>T	c.(1012-1014)CCC>CCT	p.P338P	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.P338P	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	338	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATCATGCCCCCGAACTGGACT	0.522													26	23					0	0	0.005443	0	0
PCDHB3	56132	broad.mit.edu	37	5	140482336	140482336	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140482336C>T	uc003lio.2	+	1	2103	c.2103C>T	c.(2101-2103)TTC>TTT	p.F701F	uc003lin.2_5'Flank	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	701	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTTCGCTCTTCCTCTTTTCGG	0.697													56	36					0	0	0.003610	0	0
PCDHGA6	56109	broad.mit.edu	37	5	140754002	140754002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140754002C>T	uc003ljy.1	+	1	352	c.352C>T	c.(352-354)CCC>TCC	p.P118S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc011dau.1_Missense_Mutation_p.P118S	NM_018919	NP_061742	Q9Y5G7	PCDG6_HUMAN	protocadherin gamma subfamily A, 6 isoform 1	118	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAATCTTTATCCCGTGGAAGT	0.483													22	17					0	0	0.002299	0	0
PCDHGA10	56106	broad.mit.edu	37	5	140793642	140793642	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:140793642A>T	uc003lkl.1	+	1	900	c.900A>T	c.(898-900)AAA>AAT	p.K300N	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc011day.1_Missense_Mutation_p.K300N	NM_018913	NP_061736	Q9Y5H3	PCDGA_HUMAN	protocadherin gamma subfamily A, 10 isoform 1	300	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AACTAAACAAATATACTGGAG	0.378													5	4					0	0	0.000602	0	0
JAKMIP2	9832	broad.mit.edu	37	5	147030090	147030090	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:147030090C>T	uc003loq.1	-	4	1030	c.648G>A	c.(646-648)AAG>AAA	p.K216K	JAKMIP2_uc011dbx.1_Silent_p.K174K|JAKMIP2_uc003lor.1_Silent_p.K216K|uc003lop.1_Intron|JAKMIP2_uc010jgo.1_Silent_p.K216K	NM_014790	NP_055605	Q96AA8	JKIP2_HUMAN	janus kinase and microtubule interacting protein	216	Potential.					Golgi apparatus				large_intestine(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGATCCTGTCCTTGGCTTTGA	0.388													18	18					0	0	0.001216	0	0
SLC6A7	6534	broad.mit.edu	37	5	149574312	149574312	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:149574312A>C	uc003lrr.2	+	2	426	c.55A>C	c.(55-57)ATG>CTG	p.M19L		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	19	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	AGACCTGCTGATGACCCCCAG	0.493													6	4					0	0	0.001168	0	0
ODZ2	57451	broad.mit.edu	37	5	167489216	167489217	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:167489216_167489217GG>AA	uc010jjd.2	+	7	1461_1462	c.1461_1462GG>AA	c.(1459-1464)AAGGAC>AAAAAC	p.D488N	ODZ2_uc003lzq.2_Missense_Mutation_p.D367N|ODZ2_uc003lzr.3_Missense_Mutation_p.D256N	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CCCTCGGGAAGGACGCTCTCTT	0.446													15	25					0	0	0.004672	0	0
DOCK2	1794	broad.mit.edu	37	5	169494601	169494601	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:169494601G>A	uc003maf.2	+	45	4635	c.4555G>A	c.(4555-4557)GAT>AAT	p.D1519N	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.D1011N|DOCK2_uc003mah.2_Missense_Mutation_p.D75N	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	1519	DHR-2.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GTACCAGAGTGATGAGACCCT	0.493													26	14					0	0	0.005443	0	0
LCP2	3937	broad.mit.edu	37	5	169693889	169693889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:169693889G>A	uc003man.1	-	10	902	c.695C>T	c.(694-696)GCT>GTT	p.A232V	LCP2_uc011des.1_Missense_Mutation_p.A27V|LCP2_uc011det.1_Missense_Mutation_p.A61V|LCP2_uc010jjo.1_Missense_Mutation_p.A39V	NM_005565	NP_005556	Q13094	LCP2_HUMAN	lymphocyte cytosolic protein 2	232					immune response|platelet activation|T cell receptor signaling pathway|transmembrane receptor protein tyrosine kinase signaling pathway	cytosol	protein binding			ovary(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	OV - Ovarian serous cystadenocarcinoma(192;0.247)		TATTGAAGGAGCAGGGACTGG	0.507													37	36					0	0	0.006230	0	0
GABRP	2568	broad.mit.edu	37	5	170215659	170215659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:170215659C>T	uc003mau.2	+	2	238	c.40C>T	c.(40-42)CTC>TTC	p.L14F	GABRP_uc011dev.1_Missense_Mutation_p.L14F	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	14						cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			GTGTCTGAGTCTCTTCACTGA	0.557													18	19					0	0	0.001882	0	0
NSD1	64324	broad.mit.edu	37	5	176562207	176562207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:176562207G>A	uc003mfr.3	+	2	241	c.103G>A	c.(103-105)GGT>AGT	p.G35S	NSD1_uc003mft.3_Intron|NSD1_uc003mfs.1_Missense_Mutation_p.G35S|NSD1_uc011dfx.1_Intron|NSD1_uc003mfp.2_Missense_Mutation_p.G35S|NSD1_uc003mfq.2_Missense_Mutation_p.G35S	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	35					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		TTTCGGTAATGGTCAATCCAA	0.443			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			32	24					0	0	0.002836	0	0
BTNL8	79908	broad.mit.edu	37	5	180377111	180377111	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr5:180377111T>G	uc003mmp.2	+	8	1304	c.1070T>G	c.(1069-1071)GTG>GGG	p.V357G	BTNL8_uc003mmq.2_3'UTR|BTNL8_uc011dhg.1_Missense_Mutation_p.V232G|BTNL8_uc010jll.2_3'UTR|BTNL8_uc010jlm.2_Missense_Mutation_p.V241G|BTNL8_uc011dhh.1_Missense_Mutation_p.V173G	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	357	B30.2/SPRY.|Cytoplasmic (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			CGCGTGGGAGTGTGCCGGGAT	0.502													18	12					0	0	0.001216	0	0
DUSP22	56940	broad.mit.edu	37	6	350831	350831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:350831G>A	uc003msx.2	+	8	957	c.518G>A	c.(517-519)GGA>GAA	p.G173E	DUSP22_uc003msy.1_3'UTR	NM_020185	NP_064570	Q9NRW4	DUS22_HUMAN	dual specificity phosphatase 22	173					apoptosis|cell proliferation|inactivation of MAPK activity|multicellular organismal development|positive regulation of JNK cascade|regulation of cell proliferation|transforming growth factor beta receptor signaling pathway	cytoplasm|nucleus	protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(77;0.228)	Breast(5;0.0249)|all_hematologic(90;0.0489)		OV - Ovarian serous cystadenocarcinoma(45;0.0277)|BRCA - Breast invasive adenocarcinoma(62;0.0669)		GCCGCTCCGGGAATTCTGAAG	0.403													31	115					0	0	0.003271	0	0
SERPINB9	5272	broad.mit.edu	37	6	2890648	2890648	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:2890648G>A	uc003mug.2	-	7	1001	c.880C>T	c.(880-882)CAA>TAA	p.Q294*	uc003mue.2_Intron|SERPINB9_uc003muf.2_Nonsense_Mutation_p.Q97*	NM_004155	NP_004146	P50453	SPB9_HUMAN	serpin peptidase inhibitor, clade B, member 9	294					anti-apoptosis|cellular response to estrogen stimulus|immune response|mast cell mediated immunity|regulation of proteolysis	cytosol|extracellular space|nucleus	caspase inhibitor activity|protease binding|serine-type endopeptidase inhibitor activity				0	Ovarian(93;0.0412)	all_hematologic(90;0.108)				TTGCCCTGTTGGAAGGCATCA	0.463													28	88					0	0	0.001512	0	0
RREB1	6239	broad.mit.edu	37	6	7231372	7231372	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:7231372C>T	uc003mxc.2	+	10	3430	c.3040C>T	c.(3040-3042)CTG>TTG	p.L1014L	RREB1_uc003mxb.2_Silent_p.L1014L|RREB1_uc010jnx.2_Silent_p.L1014L	NM_001003698	NP_001003698	Q92766	RREB1_HUMAN	ras responsive element binding protein 1 isoform	1014	Pro-rich.				multicellular organismal development|positive regulation of transcription, DNA-dependent|Ras protein signal transduction|transcription from RNA polymerase II promoter	cytoplasm|nuclear speck	DNA binding|zinc ion binding			ovary(4)|large_intestine(2)|pancreas(2)|skin(2)|breast(1)	11	Ovarian(93;0.0398)	all_hematologic(90;0.0384)|Prostate(151;0.191)				CCCTGTTCAGCTGGCGGTCCC	0.682													9	22					0	0	0.004482	0	0
DTNBP1	84062	broad.mit.edu	37	6	15615601	15615601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:15615601C>T	uc003nbm.2	-	6	556	c.385G>A	c.(385-387)GAG>AAG	p.E129K	DTNBP1_uc003nbl.2_Missense_Mutation_p.E48K|DTNBP1_uc003nbn.2_RNA|DTNBP1_uc003nbo.2_RNA|DTNBP1_uc003nbp.2_Missense_Mutation_p.E129K|DTNBP1_uc010jph.2_Missense_Mutation_p.E116K	NM_032122	NP_115498	Q96EV8	DTBP1_HUMAN	dystrobrevin binding protein 1 isoform a	129	Potential.				actin cytoskeleton reorganization|cellular membrane organization|neuron projection morphogenesis|post-Golgi vesicle-mediated transport|regulation of dopamine receptor signaling pathway	axon part|BLOC-1 complex|cell junction|dendritic spine|endoplasmic reticulum membrane|endosome membrane|growth cone|melanosome membrane|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|synaptic vesicle membrane|synaptosome	identical protein binding				0	Breast(50;0.0289)|Ovarian(93;0.103)	all_hematologic(90;0.0895)	Epithelial(50;0.211)			AGGTTGTTCTCTACCTCCTCA	0.368									Hermansky-Pudlak_syndrome				17	57					0	0	0.007413	0	0
CAP2	10486	broad.mit.edu	37	6	17551751	17551751	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:17551751C>T	uc003ncb.2	+	12	1509	c.1266C>T	c.(1264-1266)TAC>TAT	p.Y422Y	CAP2_uc010jpk.1_RNA|CAP2_uc011dja.1_Silent_p.Y396Y|CAP2_uc011djb.1_Silent_p.Y358Y|CAP2_uc011djc.1_Silent_p.Y310Y|CAP2_uc011djd.1_Silent_p.Y162Y	NM_006366	NP_006357	P40123	CAP2_HUMAN	adenylyl cyclase-associated protein 2	422	C-CAP/cofactor C-like.				activation of adenylate cyclase activity|axon guidance|cytoskeleton organization|establishment or maintenance of cell polarity|signal transduction	plasma membrane	actin binding			ovary(1)	1	Breast(50;0.0333)|Ovarian(93;0.0386)	all_hematologic(90;0.0466)	all cancers(50;0.194)|Epithelial(50;0.227)			GCCACATATACCTCAGTGAAG	0.398													47	18					0	0	0.003610	0	0
SLC17A2	10246	broad.mit.edu	37	6	25917290	25917290	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:25917290G>A	uc011dkb.1	-	6	758	c.675C>T	c.(673-675)CTC>CTT	p.L225L	SLC17A2_uc011dkc.1_Silent_p.L225L|SLC17A2_uc003nfl.2_Silent_p.L225L			O00624	NPT3_HUMAN	SubName: Full=Solute carrier family 17 (Sodium phosphate), member 2, isoform CRA_b; SubName: Full=Putative uncharacterized protein SLC17A2;	225	Helical; (Potential).				phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			ovary(1)	1						TGAACCATAGGAGACAGCAGA	0.463													24	10					0	0	0.003954	0	0
HLA-A	3105	broad.mit.edu	37	6	29910668	29910668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:29910668G>A	uc003nol.2	+	2	208	c.208G>A	c.(208-210)GAG>AAG	p.E70K	HLA-G_uc011dmb.1_Intron|HCG4P6_uc003nog.1_Intron|HLA-A_uc010jrq.2_5'UTR|HLA-A_uc003nok.2_5'UTR|HLA-A_uc003non.2_Missense_Mutation_p.E70K|HLA-A_uc003noo.2_Missense_Mutation_p.E70K|HLA-A_uc010jrr.2_Missense_Mutation_p.E70K|HLA-A_uc003nom.2_5'UTR|HLA-A_uc010klp.2_Missense_Mutation_p.E42K|HLA-A_uc011dmc.1_5'UTR|HLA-A_uc011dmd.1_5'Flank	NM_002116	NP_002107	P30443	1A01_HUMAN	major histocompatibility complex, class I, A	70	Extracellular (Potential).|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|regulation of immune response|type I interferon-mediated signaling pathway	integral to plasma membrane|MHC class I protein complex	MHC class I receptor activity			upper_aerodigestive_tract(1)|ovary(1)	2						CCAGAGGATGGAGCCGCGGGC	0.692									Melanoma_Familial_Clustering_of|Lichen_Sclerosis_et_Atrophicus_Familial_Clustering_of|Osteosarcoma_Familial_Clustering_of|Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of	Multiple Myeloma(9;0.094)			9	7					0	0	0.000673	0	0
PPP1R10	5514	broad.mit.edu	37	6	30572209	30572209	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:30572209C>T	uc003nqn.1	-	13	1734	c.1182G>A	c.(1180-1182)AGG>AGA	p.R394R	PPP1R10_uc010jsc.1_Silent_p.R48R	NM_002714	NP_002705	Q96QC0	PP1RA_HUMAN	protein phosphatase 1, regulatory subunit 10	394	Necessary for interaction with PPP1CA (By similarity).|Essential for PPP1CA inhibition (By similarity).|Necessary for interaction with PPP1CC.				protein import into nucleus|transcription, DNA-dependent	PTW/PP1 phosphatase complex	DNA binding|protein phosphatase inhibitor activity|RNA binding|zinc ion binding			ovary(2)|lung(1)|kidney(1)	4						TTTTCCTCTTCCTGCCTTTCC	0.483													56	22					0	0	0.003610	0	0
MDC1	9656	broad.mit.edu	37	6	30680248	30680248	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:30680248G>A	uc003nrg.3	-	5	1911	c.1471C>T	c.(1471-1473)CCT>TCT	p.P491S	MDC1_uc003nrf.3_Missense_Mutation_p.P145S|MDC1_uc011dmp.1_Missense_Mutation_p.P363S|MDC1_uc003nrh.1_Missense_Mutation_p.P363S|MDC1_uc003nri.2_Missense_Mutation_p.P491S	NM_014641	NP_055456	Q14676	MDC1_HUMAN	mediator of DNA-damage checkpoint 1	491	Required for nuclear localization (NLS1).				cell cycle|double-strand break repair via homologous recombination|intra-S DNA damage checkpoint	focal adhesion|nucleoplasm	FHA domain binding|protein C-terminus binding			breast(2)|ovary(1)|kidney(1)	4						TCCCCAAAAGGAGGTTGGTCC	0.502								Other_conserved_DNA_damage_response_genes					42	39					0	0	0.003214	0	0
BAT2	7916	broad.mit.edu	37	6	31597008	31597009	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:31597008_31597009CC>TT	uc003nvb.3	+	13	2102_2103	c.1853_1854CC>TT	c.(1852-1854)CCC>CTT	p.P618L	BAT2_uc011dnv.1_Intron|BAT2_uc003nvc.3_Missense_Mutation_p.P618L	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	618	4 X 57 AA type A repeats.					cytoplasm|nucleus	protein binding				0						AAGGTGGAACCCAAGGGTGATG	0.579													27	23					0	0	0.004672	0	0
VARS	7407	broad.mit.edu	37	6	31747242	31747242	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:31747242G>A	uc003nxe.2	-	28	3783	c.3360C>T	c.(3358-3360)TCC>TCT	p.S1120S	C6orf27_uc011dog.1_5'Flank|C6orf27_uc003nxd.2_5'Flank|C6orf27_uc011doh.1_5'Flank|VARS_uc003nxf.1_Silent_p.S57S	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	1120					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	CGGCCCGCAGGGAGCGCACGG	0.692													54	38					0	0	0.003610	0	0
C4A	720	broad.mit.edu	37	6	31995183	31995183	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:31995183C>T	uc011dpd.1	+	21	2814	c.2763C>T	c.(2761-2763)TTC>TTT	p.F921F	C4A_uc011dpe.1_Silent_p.F921F	NM_007293	NP_009224	P0C0L4	CO4A_HUMAN	complement component 4A preproprotein	921					complement activation, classical pathway|inflammatory response|innate immune response	extracellular space	endopeptidase inhibitor activity				0						CCTTCGAATTCCCTGTGGGAG	0.622													10	5					0	0	0.003163	0	0
PSMB8	5696	broad.mit.edu	37	6	32810460	32810461	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:32810460_32810461GG>TA	uc003oce.2	-	3	438_439	c.395_396CC>TA	c.(394-396)GCC>GTA	p.A132V	PSMB8_uc003ocf.2_Missense_Mutation_p.A128V|PSMB8_uc011dqh.1_3'UTR	NM_148919	NP_683720	P28062	PSB8_HUMAN	proteasome beta 8 subunit isoform E2 proprotein	132					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|type I interferon-mediated signaling pathway|viral reproduction	cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			skin(1)	1						TGCATTCCTTGGCCAGCAGGCG	0.52													10	7					0	0	0.004672	0	0
LRFN2	57497	broad.mit.edu	37	6	40360102	40360102	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:40360102C>T	uc003oph.1	-	3	2415	c.1950G>A	c.(1948-1950)AAG>AAA	p.K650K		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	650	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CAAGGCTGGGCTTGGGGCGCG	0.706													3	1					0	0	0.004672	0	0
TCTE1	202500	broad.mit.edu	37	6	44255329	44255329	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:44255329G>A	uc003oxi.2	-	2	390	c.234C>T	c.(232-234)CTC>CTT	p.L78L	SPATS1_uc003oxg.2_Intron|TMEM151B_uc003oxf.2_Intron	NM_182539	NP_872345	Q5JU00	TCTE1_HUMAN	t-complex-associated testis expressed 1	78										ovary(2)|skin(2)	4	Hepatocellular(11;0.00908)|all_lung(25;0.0101)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			GCTCTGTGAGGAGGGGCACGA	0.582													6	12					0	0	0.001168	0	0
TDRD6	221400	broad.mit.edu	37	6	46660898	46660898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:46660898C>T	uc003oyj.2	+	1	5033	c.5033C>T	c.(5032-5034)CCT>CTT	p.P1678L	TDRD6_uc010jze.2_Missense_Mutation_p.P1672L	NM_001010870	NP_001010870	O60522	TDRD6_HUMAN	tudor domain containing 6	1678					cell differentiation|multicellular organismal development|spermatogenesis	chromatoid body	nucleic acid binding			breast(3)|ovary(2)|skin(1)	6			Lung(136;0.192)			TGTGATATCCCTTTAGCAATT	0.303													11	9					0	0	0.001368	0	0
GPR115	221393	broad.mit.edu	37	6	47682264	47682264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:47682264C>T	uc003oza.1	+	6	1541	c.1283C>T	c.(1282-1284)TCC>TTC	p.S428F	GPR115_uc003oyz.1_Missense_Mutation_p.S485F|GPR115_uc003ozb.1_Missense_Mutation_p.S426F	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	428	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						ACAGTGTGGTCCCGGGTGGTT	0.493													34	28					0	0	0.003755	0	0
C6orf138	442213	broad.mit.edu	37	6	47846785	47846785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:47846785C>T	uc011dwm.1	-	3	1829	c.1744G>A	c.(1744-1746)GAT>AAT	p.D582N	C6orf138_uc011dwn.1_Missense_Mutation_p.D346N	NM_001013732	NP_001013754	Q6ZW05	CF138_HUMAN	hypothetical protein LOC442213	599						integral to membrane	hedgehog receptor activity			central_nervous_system(1)	1						TTGCTTTCATCCCCTGCCTTG	0.423													12	18					0	0	0.001368	0	0
PAQR8	85315	broad.mit.edu	37	6	52268165	52268165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:52268165C>T	uc003pao.3	+	2	328	c.154C>T	c.(154-156)CGC>TGC	p.R52C		NM_133367	NP_588608	Q8TEZ7	MPRB_HUMAN	progestin and adipoQ receptor family member	52	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|oogenesis	integral to membrane|plasma membrane	receptor activity|steroid binding				0	Lung NSC(77;0.0875)					GCCTTACATCCGCACCGGCTA	0.607													13	17					0	0	0.003163	0	0
C6orf142	90523	broad.mit.edu	37	6	54066921	54066921	+	Missense_Mutation	SNP	C	T	T	rs138048655		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:54066921C>T	uc003pcg.3	+	10	1116	c.1003C>T	c.(1003-1005)CGC>TGC	p.R335C	C6orf142_uc003pcf.2_Missense_Mutation_p.R859C|C6orf142_uc003pch.3_Missense_Mutation_p.R179C|C6orf142_uc011dxa.1_Missense_Mutation_p.R870C	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	335						nuclear envelope|PML body	protein binding	p.R335C(1)			0	Lung NSC(77;0.0317)					TGGAGTAATTCGCCCAGTACC	0.313													24	7					0	0	0.003954	0	0
MCART3P	442229	broad.mit.edu	37	6	66498550	66498550	+	RNA	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:66498550C>T	uc011dxw.1	+	1		c.779C>T				NR_026540				Homo sapiens mitochondrial carrier triple repeat 3 pseudogene, mRNA (cDNA clone IMAGE:4821649).												0						AAACTTGTATCCTGGAATCCT	0.458													12	5					0	0	0.001368	0	0
SENP6	26054	broad.mit.edu	37	6	76350409	76350409	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:76350409C>T	uc003pid.3	+	6	1087	c.468C>T	c.(466-468)GAC>GAT	p.D156D	SENP6_uc003pie.3_Intron|SENP6_uc003pic.2_Intron|SENP6_uc003pif.1_Silent_p.D47D	NM_015571	NP_056386	Q9GZR1	SENP6_HUMAN	SUMO1/sentrin specific peptidase 6 isoform 1	156					proteolysis	cytoplasm|nucleus	cysteine-type peptidase activity			breast(2)|urinary_tract(1)|ovary(1)|lung(1)|skin(1)	6		all_hematologic(105;0.189)				GCAGTCTGGACCGAAAAGAAA	0.269													6	9					0	0	0.004482	0	0
LCA5	167691	broad.mit.edu	37	6	80223457	80223458	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:80223457_80223458GG>AA	uc003pix.2	-	3	626_627	c.191_192CC>TT	c.(190-192)GCC>GTT	p.A64V	LCA5_uc003piy.2_Missense_Mutation_p.A64V|LCA5_uc011dyq.1_RNA|LCA5_uc011dyr.1_Missense_Mutation_p.A64V	NM_001122769	NP_001116241	Q86VQ0	LCA5_HUMAN	Leber congenital amaurosis 5	64					protein transport	cilium axoneme|microtubule basal body	protein binding				0		all_cancers(76;3.32e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.0176)		BRCA - Breast invasive adenocarcinoma(397;0.0657)		GTTTCCGAGGGGCTAAAAAAGA	0.436													52	46					0	0	0.004672	0	0
ME1	4199	broad.mit.edu	37	6	84025120	84025120	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:84025120C>T	uc003pjy.2	-	6	719	c.613G>A	c.(613-615)GAT>AAT	p.D205N	ME1_uc011dzb.1_Missense_Mutation_p.D130N|ME1_uc011dzc.1_Missense_Mutation_p.D39N	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	205					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	TAGAGTGGATCTTTAAGTAAC	0.254													23	14					0	0	0.003330	0	0
KIAA1009	22832	broad.mit.edu	37	6	84859352	84859352	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:84859352G>T	uc010kbp.2	-	24	3797	c.3700C>A	c.(3700-3702)CTT>ATT	p.L1234I	KIAA1009_uc003pkj.3_Missense_Mutation_p.L1158I|KIAA1009_uc003pki.3_Missense_Mutation_p.L620I	NM_014895	NP_055710	Q5TB80	QN1_HUMAN	KIAA1009 protein	1234					cell division|mitosis	centrosome|nucleus|plasma membrane|spindle	protein binding			ovary(1)	1		all_cancers(76;1.5e-06)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00258)		BRCA - Breast invasive adenocarcinoma(397;0.089)		TTTTGGCAAAGGAGTTTCTCT	0.373													29	14					5.77227e-19	7.07218e-19	0.001512	1	0
EPHA7	2045	broad.mit.edu	37	6	93964457	93964457	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:93964457T>G	uc003poe.2	-	14	2681	c.2440A>C	c.(2440-2442)ACA>CCA	p.T814P	EPHA7_uc003pof.2_Missense_Mutation_p.T809P|EPHA7_uc011eac.1_Missense_Mutation_p.T810P	NM_004440	NP_004431	Q15375	EPHA7_HUMAN	ephrin receptor EphA7 precursor	814	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(8)|ovary(7)|upper_aerodigestive_tract(3)|central_nervous_system(3)|skin(3)|large_intestine(2)|stomach(1)|pancreas(1)	28		all_cancers(76;7.47e-10)|Acute lymphoblastic leukemia(125;1.88e-09)|all_hematologic(75;1.75e-07)|all_epithelial(107;3.6e-05)|Lung NSC(302;0.0368)|all_lung(197;0.0509)|Colorectal(196;0.142)		BRCA - Breast invasive adenocarcinoma(108;0.0847)		CTGGCTGATGTGAATTTCCGG	0.383													13	13					0	0	0.001368	0	0
SCML4	256380	broad.mit.edu	37	6	108042121	108042121	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:108042121G>A	uc010kdf.2	-	6	1010	c.759C>T	c.(757-759)TCC>TCT	p.S253S	SCML4_uc003prz.3_Silent_p.S195S|SCML4_uc011eam.1_Silent_p.S253S|SCML4_uc003pry.3_Silent_p.S11S|SCML4_uc003psa.3_Silent_p.S224S	NM_198081	NP_932347	Q8N228	SCML4_HUMAN	sex comb on midleg-like 4	253					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		all_cancers(87;3.26e-06)|Acute lymphoblastic leukemia(125;3.08e-08)|all_hematologic(75;1.15e-06)|all_epithelial(87;0.00142)|Colorectal(196;0.0316)		BRCA - Breast invasive adenocarcinoma(108;0.01)|Epithelial(106;0.0509)|all cancers(137;0.0586)|OV - Ovarian serous cystadenocarcinoma(136;0.0758)		GGTTAAAGGTGGAGGCGGAGG	0.587													19	10					0	0	0.001882	0	0
MICAL1	64780	broad.mit.edu	37	6	109770007	109770007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:109770007G>A	uc003ptj.2	-	11	1846	c.1592C>T	c.(1591-1593)TCC>TTC	p.S531F	MICAL1_uc003ptk.2_Missense_Mutation_p.S531F|MICAL1_uc010kdr.2_Missense_Mutation_p.S445F|MICAL1_uc011eaq.1_Missense_Mutation_p.S550F	NM_022765	NP_073602	Q8TDZ2	MICA1_HUMAN	microtubule associated monoxygenase, calponin	531	CH.				cytoskeleton organization|signal transduction	cytoplasm|intermediate filament	SH3 domain binding|zinc ion binding			breast(2)|ovary(1)	3		all_cancers(87;0.000189)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00686)|Lung SC(18;0.0743)|Colorectal(196;0.101)|all_lung(197;0.149)		Epithelial(106;0.0142)|all cancers(137;0.0197)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)|BRCA - Breast invasive adenocarcinoma(108;0.0574)		AGACAAATCGGAGACGTGGAC	0.647													21	19					0	0	0.001523	0	0
RFX6	222546	broad.mit.edu	37	6	117248234	117248234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:117248234C>T	uc003pxm.2	+	17	1993	c.1930C>T	c.(1930-1932)CCC>TCC	p.P644S		NM_173560	NP_775831	Q8HWS3	RFX6_HUMAN	regulatory factor X, 6	644					glucose homeostasis|pancreatic A cell differentiation|pancreatic D cell differentiation|pancreatic E cell differentiation|positive regulation of transcription, DNA-dependent|regulation of insulin secretion|transcription, DNA-dependent|type B pancreatic cell differentiation	nucleus	protein binding|transcription regulatory region DNA binding			ovary(1)|pancreas(1)|skin(1)	3						GATGACACCACCCATTTCTCC	0.488													28	20					0	0	0.007291	0	0
ROS1	6098	broad.mit.edu	37	6	117737455	117737455	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:117737455T>C	uc003pxp.1	-	3	393	c.194A>G	c.(193-195)AAC>AGC	p.N65S	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	65	Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		ATCTACAGAGTTCCAAAAGTG	0.338			T	GOPC|ROS1	glioblastoma|NSCLC								10	10					0	0	0.002450	0	0
CLVS2	134829	broad.mit.edu	37	6	123319199	123319199	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:123319199G>A	uc003pzi.1	+	2	1146	c.277G>A	c.(277-279)GAC>AAC	p.D93N		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	93					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TAAGGCCACCGACCCTGGCAT	0.542													21	23					0	0	0.002780	0	0
NKAIN2	154215	broad.mit.edu	37	6	124979392	124979392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:124979392G>A	uc003pzo.2	+	4	611	c.334G>A	c.(334-336)GGA>AGA	p.G112R	NKAIN2_uc003pzn.1_Missense_Mutation_p.G112R|NKAIN2_uc003pzp.2_Missense_Mutation_p.G111R|NKAIN2_uc010keq.2_Intron|NKAIN2_uc010ker.2_Missense_Mutation_p.G22R	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	112						integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		GATGGAGAATGGACCAGGATG	0.473													20	20					0	0	0.002780	0	0
HDDC2	51020	broad.mit.edu	37	6	125614016	125614016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:125614016G>A	uc003qaa.1	-	4	553	c.349C>T	c.(349-351)CTC>TTC	p.L117F	HDDC2_uc003qab.1_RNA	NM_016063	NP_057147	Q7Z4H3	HDDC2_HUMAN	HD domain containing 2	117	HD.						metal ion binding|phosphoric diester hydrolase activity				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0186)		TCCTTTCTGAGGTCCTCTGGT	0.348													39	27					0	0	0.002522	0	0
LAMA2	3908	broad.mit.edu	37	6	129802525	129802525	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:129802525C>T	uc003qbn.2	+	54	7795	c.7690C>T	c.(7690-7692)CTT>TTT	p.L2564F	LAMA2_uc003qbo.2_Missense_Mutation_p.L2560F|uc003qbq.2_RNA	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	2564	Laminin G-like 3.		L -> P (in MDC1A).		cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		CGGCATCATTCTTTTGGGAAG	0.488													31	18					0	0	0.001512	0	0
SAMD3	154075	broad.mit.edu	37	6	130530700	130530700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:130530700G>A	uc003qbv.2	-	6	649	c.323C>T	c.(322-324)TCT>TTT	p.S108F	SAMD3_uc003qbx.2_Missense_Mutation_p.S108F|SAMD3_uc003qbw.2_Missense_Mutation_p.S108F|SAMD3_uc010kfg.1_Missense_Mutation_p.S108F|SAMD3_uc003qby.2_Missense_Mutation_p.S108F|SAMD3_uc003qbz.1_Missense_Mutation_p.S67F	NM_001017373	NP_001017373	Q8N6K7	SAMD3_HUMAN	sterile alpha motif domain containing 3 isoform	108										ovary(1)	1				GBM - Glioblastoma multiforme(226;0.00594)|OV - Ovarian serous cystadenocarcinoma(155;0.128)		TGGATAGAAAGATGGCATCTG	0.443													17	16					0	0	0.001216	0	0
TAAR2	9287	broad.mit.edu	37	6	132938531	132938531	+	Silent	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:132938531A>G	uc003qdl.1	-	2	814	c.814T>C	c.(814-816)TTA>CTA	p.L272L	TAAR2_uc010kfr.1_Silent_p.L227L	NM_001033080	NP_001028252	Q9P1P5	TAAR2_HUMAN	trace amine associated receptor 2 isoform 1	272	Helical; Name=6; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00608)|GBM - Glioblastoma multiforme(226;0.0151)		CAACATAATAAGAAAACTCCT	0.343													8	7					0	0	0.000978	0	0
HIVEP2	3097	broad.mit.edu	37	6	143091114	143091114	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:143091114G>A	uc003qjd.2	-	5	5505	c.4762C>T	c.(4762-4764)CCA>TCA	p.P1588S		NM_006734	NP_006725	P31629	ZEP2_HUMAN	human immunodeficiency virus type I enhancer	1588					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)|central_nervous_system(1)	6				OV - Ovarian serous cystadenocarcinoma(155;1.61e-05)|GBM - Glioblastoma multiforme(68;0.0102)		TCTCCTGCTGGTAATGAAGAA	0.552													24	32					0	0	0.003954	0	0
AKAP12	9590	broad.mit.edu	37	6	151671352	151671352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:151671352C>T	uc011eep.1	+	4	2066	c.1826C>T	c.(1825-1827)CCC>CTC	p.P609L	AKAP12_uc003qoe.2_Missense_Mutation_p.P609L|AKAP12_uc003qof.2_Missense_Mutation_p.P511L|AKAP12_uc010kim.2_Intron|AKAP12_uc003qog.2_Missense_Mutation_p.P504L	NM_005100	NP_005091	Q02952	AKA12_HUMAN	A kinase (PRKA) anchor protein 12 isoform 1	609	AKAP 1.				G-protein coupled receptor protein signaling pathway|positive regulation of cAMP biosynthetic process|positive regulation of protein kinase A signaling cascade|protein targeting	cell cortex|cytoskeleton|plasma membrane	adenylate cyclase binding|protein kinase A binding			large_intestine(2)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	8		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.175)	OV - Ovarian serous cystadenocarcinoma(155;2.98e-11)		GGTGTCACTCCCTGGGCATCA	0.507													5	6					0	0	0.000602	0	0
FNDC1	84624	broad.mit.edu	37	6	159653402	159653402	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:159653402C>T	uc010kjv.2	+	11	2058	c.1858C>T	c.(1858-1860)CCT>TCT	p.P620S	FNDC1_uc010kjw.1_Missense_Mutation_p.P505S	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	620						extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TTCGGCCTCTCCTGCCCACCA	0.672													9	7					0	0	0.006214	0	0
PLG	5340	broad.mit.edu	37	6	161152886	161152886	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:161152886C>T	uc003qtm.3	+	12	1611	c.1548C>T	c.(1546-1548)TTC>TTT	p.F516F		NM_000301	NP_000292	P00747	PLMN_HUMAN	plasminogen	516	Kringle 5.				extracellular matrix disassembly|fibrinolysis|negative regulation of cell proliferation|negative regulation of cell-substrate adhesion|negative regulation of fibrinolysis|platelet activation|platelet degranulation|positive regulation of fibrinolysis|proteolysis|tissue remodeling	extracellular space|extrinsic to external side of plasma membrane|platelet alpha granule lumen	apolipoprotein binding|cell surface binding|serine-type endopeptidase activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(65;5.24e-17)|BRCA - Breast invasive adenocarcinoma(81;7.08e-06)	Aminocaproic Acid(DB00513)|Streptokinase(DB00086)|Tranexamic Acid(DB00302)|Urokinase(DB00013)	ACAGCATTTTCACTCCAGAGA	0.512													18	14					0	0	0.001882	0	0
MAP3K4	4216	broad.mit.edu	37	6	161518132	161518132	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr6:161518132C>T	uc003qtn.2	+	16	3590	c.3448C>T	c.(3448-3450)CGT>TGT	p.R1150C	MAP3K4_uc010kkc.1_Missense_Mutation_p.R1146C|MAP3K4_uc003qto.2_Missense_Mutation_p.R1150C|MAP3K4_uc011efz.1_RNA|MAP3K4_uc011ega.1_Missense_Mutation_p.R603C|MAP3K4_uc003qtp.2_Missense_Mutation_p.R136C	NM_005922	NP_005913	Q9Y6R4	M3K4_HUMAN	mitogen-activated protein kinase kinase kinase 4	1150					activation of MAPKK activity|JNK cascade|positive regulation of JUN kinase activity	perinuclear region of cytoplasm	ATP binding|MAP kinase kinase kinase activity|metal ion binding|protein binding			ovary(3)|lung(3)|skin(2)|stomach(1)	9		Breast(66;0.000776)|Ovarian(120;0.0367)|Prostate(117;0.0771)		OV - Ovarian serous cystadenocarcinoma(65;1.85e-18)|BRCA - Breast invasive adenocarcinoma(81;3.04e-05)		GAACAGCCCCCGTCCTATGAA	0.448													18	13					0	0	0.007413	0	0
GET4	51608	broad.mit.edu	37	7	927100	927100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:927100C>T	uc003sjl.1	+	4	502	c.410C>T	c.(409-411)TCC>TTC	p.S137F	GET4_uc003sjj.1_RNA	NM_015949	NP_057033	Q7L5D6	GET4_HUMAN	hypothetical protein LOC51608	137					tail-anchored membrane protein insertion into ER membrane|transport	BAT3 complex	protein binding				0						AGTGGGGGCTCCGGGAAGCTG	0.637													12	37					0	0	0.001368	0	0
GPER	2852	broad.mit.edu	37	7	1131498	1131498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:1131498G>A	uc010ksd.1	+	2	523	c.134G>A	c.(133-135)GGG>GAG	p.G45E	C7orf50_uc003sju.2_Intron|C7orf50_uc011jvt.1_Intron|C7orf50_uc011jvu.1_Intron|GPER_uc003sjz.1_Missense_Mutation_p.G45E|GPER_uc003ska.1_Missense_Mutation_p.G45E|GPER_uc003skb.2_Missense_Mutation_p.G45E	NM_001098201	NP_001091671	Q99527	GPER_HUMAN	G protein-coupled receptor 30	45	Extracellular (Potential).			Missing (in Ref. 7; AAB02736).		endoplasmic reticulum membrane|Golgi membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;2.32e-16)		CTGGCCAATGGGACAGGTGAG	0.647													8	15					0	0	0.004482	0	0
EIF3B	8662	broad.mit.edu	37	7	2415157	2415157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:2415157C>T	uc003slx.2	+	14	2106	c.2023C>T	c.(2023-2025)CAT>TAT	p.H675Y	EIF3B_uc003sly.2_Missense_Mutation_p.H675Y|EIF3B_uc003sma.2_Missense_Mutation_p.H403Y|EIF3B_uc003smb.2_5'Flank	NM_003751	NP_003742	P55884	EIF3B_HUMAN	eukaryotic translation initiation factor 3,	675	WD 5.				regulation of translational initiation	cytosol|eukaryotic translation initiation factor 3 complex	nucleotide binding|protein complex scaffold|translation initiation factor activity				0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0833)|OV - Ovarian serous cystadenocarcinoma(56;7.76e-14)		CTGGTGGAGCCATAAGGTGCA	0.582													16	36					0	0	0.004990	0	0
CHST12	55501	broad.mit.edu	37	7	2472882	2472882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:2472882C>T	uc003smc.2	+	2	743	c.608C>T	c.(607-609)CCG>CTG	p.P203L	CHST12_uc003smd.2_Missense_Mutation_p.P203L	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	203	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		CTGCGCATCCCGCGCGAGCAC	0.662													11	10					0	0	0.000673	0	0
CARD11	84433	broad.mit.edu	37	7	2952950	2952951	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:2952950_2952951CC>TT	uc003smv.2	-	22	3393_3394	c.2989_2990GG>AA	c.(2989-2991)GGT>AAT	p.G997N		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	997	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CTCCATGGCACCTCCCGAGTTG	0.649			Mis		DLBCL								23	60					0	0	0.004672	0	0
CARD11	84433	broad.mit.edu	37	7	2954959	2954959	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:2954959C>T	uc003smv.2	-	21	3155	c.2751G>A	c.(2749-2751)GAG>GAA	p.E917E		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	917					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TGCGGACCCGCTCGTTGCTGT	0.587			Mis		DLBCL								11	25					0	0	0.000978	0	0
RBAK	57786	broad.mit.edu	37	7	5105064	5105064	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:5105064C>T	uc010kss.1	+	6	2301	c.1977C>T	c.(1975-1977)GTC>GTT	p.V659V	LOC389458_uc003snr.2_Intron|RBAK_uc003sns.1_Silent_p.V659V	NM_021163	NP_066986	Q9NYW8	RBAK_HUMAN	RB-associated KRAB repressor	659	C2H2-type 15.|Interaction with AR.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			ovary(3)|kidney(1)|skin(1)	5		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0916)|OV - Ovarian serous cystadenocarcinoma(56;2.44e-14)		GTGGGAAAGTCTTTTCTCAGA	0.413													27	47					0	0	0.006320	0	0
DGKB	1607	broad.mit.edu	37	7	14613939	14613939	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:14613939G>A	uc003ssz.2	-	19	1858	c.1671C>T	c.(1669-1671)ATC>ATT	p.I557I	DGKB_uc011jxt.1_Silent_p.I538I|DGKB_uc003sta.2_Silent_p.I557I|DGKB_uc011jxu.1_Silent_p.I556I	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	557	DAGKc.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	TGTCCAACATGATTTCTGTGC	0.368													36	59					0	0	0.003755	0	0
DGKB	1607	broad.mit.edu	37	7	14620486	14620487	+	Splice_Site	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:14620486_14620487CC>TT	uc003ssz.2	-	18	1799	c.1612_splice	c.e18+1	p.G538_splice	DGKB_uc011jxt.1_Splice_Site_p.G519_splice|DGKB_uc003sta.2_Splice_Site_p.G538_splice|DGKB_uc011jxu.1_Splice_Site_p.G537_splice	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1						activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	AGCTGCTTTACCTCCTCCCCAT	0.436													11	35					0	0	0.004672	0	0
TMEM195	392636	broad.mit.edu	37	7	15470631	15470631	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:15470631C>T	uc003stb.1	-	4	682	c.512G>A	c.(511-513)TGG>TAG	p.W171*		NM_001004320	NP_001004320	Q6ZNB7	ALKMO_HUMAN	transmembrane protein 195	171					ether lipid metabolic process|fatty acid biosynthetic process|membrane lipid metabolic process	endoplasmic reticulum membrane|integral to membrane	glyceryl-ether monooxygenase activity|iron ion binding				0						ACAACTTACCCAGGAAGTATA	0.338													10	29					0	0	0.000673	0	0
HDAC9	9734	broad.mit.edu	37	7	18688097	18688097	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:18688097C>T	uc003suh.2	+	10	1290	c.1249C>T	c.(1249-1251)CCC>TCC	p.P417S	HDAC9_uc003sue.2_Missense_Mutation_p.P417S|HDAC9_uc011jyd.1_Missense_Mutation_p.P417S|HDAC9_uc003sui.2_Missense_Mutation_p.P420S|HDAC9_uc003suj.2_Missense_Mutation_p.P376S|HDAC9_uc011jya.1_Missense_Mutation_p.P414S|HDAC9_uc003sua.1_Missense_Mutation_p.P395S|HDAC9_uc011jyb.1_Missense_Mutation_p.P373S|HDAC9_uc003sud.1_Missense_Mutation_p.P417S|HDAC9_uc011jyc.1_Missense_Mutation_p.P376S|HDAC9_uc003suf.1_Missense_Mutation_p.P448S|HDAC9_uc010kud.1_Missense_Mutation_p.P420S|HDAC9_uc011jye.1_Missense_Mutation_p.P389S|HDAC9_uc011jyf.1_Missense_Mutation_p.P340S|HDAC9_uc010kue.1_Missense_Mutation_p.P160S	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	417					B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	AGGTGGAGTTCCCTTACATCC	0.343													14	27					0	0	0.003163	0	0
MACC1	346389	broad.mit.edu	37	7	20199458	20199458	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:20199458C>T	uc003sus.3	-	5	835	c.526G>A	c.(526-528)GAG>AAG	p.E176K	MACC1_uc010kug.2_Missense_Mutation_p.E176K	NM_182762	NP_877439	Q6ZN28	MACC1_HUMAN	putative binding protein 7a5	176					positive regulation of cell division|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	growth factor activity			ovary(2)|skin(1)	3						TTATAAGCCTCCCGATCATTT	0.468													18	41					0	0	0.007413	0	0
DNAH11	8701	broad.mit.edu	37	7	21781647	21781647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:21781647C>T	uc003svc.2	+	50	8069	c.8038C>T	c.(8038-8040)CCA>TCA	p.P2680S		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2680	AAA 3 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AGCATTTGCTCCATCAATTCT	0.403									Kartagener_syndrome				24	74					0	0	0.003954	0	0
CHN2	1124	broad.mit.edu	37	7	29519972	29519972	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:29519972G>A	uc003szz.2	+	7	1091	c.654G>A	c.(652-654)AAG>AAA	p.K218K	CHN2_uc011jzs.1_Silent_p.K293K|CHN2_uc010kva.2_Intron|CHN2_uc010kvb.2_Intron|CHN2_uc010kvc.2_Silent_p.K183K|CHN2_uc011jzt.1_Silent_p.K231K|CHN2_uc010kvd.2_Silent_p.K74K|CHN2_uc011jzu.1_Silent_p.K203K|CHN2_uc010kvg.2_Silent_p.K82K|CHN2_uc010kvh.2_Silent_p.K82K|CHN2_uc010kvi.2_Silent_p.K82K|CHN2_uc010kve.2_Silent_p.K82K|CHN2_uc003taa.2_Silent_p.K82K|CHN2_uc010kvf.2_Silent_p.K82K|CHN2_uc010kvj.2_Intron|CHN2_uc010kvk.2_Intron|CHN2_uc010kvl.2_Intron|CHN2_uc010kvm.2_Intron	NM_004067	NP_004058	P52757	CHIO_HUMAN	beta chimerin isoform 2	218	Phorbol-ester/DAG-type.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|membrane	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(2)	2						ACAACTTTAAGGTAAGCAAGC	0.453													15	32					0	0	0.004007	0	0
INMT	11185	broad.mit.edu	37	7	30795310	30795310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:30795310C>T	uc003tbs.1	+	3	651	c.635C>T	c.(634-636)TCC>TTC	p.S212F	FAM188B_uc010kwe.2_Intron|INMT_uc010kwc.1_RNA|INMT_uc010kwd.1_Missense_Mutation_p.S211F	NM_006774	NP_006765	O95050	INMT_HUMAN	indolethylamine N-methyltransferase	212						cytoplasm	amine N-methyltransferase activity				0						CGTGAATTTTCCTGCGTGGCC	0.597													10	16					0	0	0.001368	0	0
NEUROD6	63974	broad.mit.edu	37	7	31378576	31378576	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:31378576C>T	uc003tch.2	-	2	660	c.307G>A	c.(307-309)GAG>AAG	p.E103K		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	103	Basic motif.				cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						CTGTTCCTCTCGCGCGCGTTC	0.468													42	108					0	0	0.003610	0	0
PDE1C	5137	broad.mit.edu	37	7	31867980	31867980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:31867980C>T	uc003tcm.1	-	12	1680	c.1211G>A	c.(1210-1212)AGA>AAA	p.R404K	PDE1C_uc003tcn.1_Missense_Mutation_p.R404K|PDE1C_uc003tco.1_Missense_Mutation_p.R464K|PDE1C_uc003tcr.2_Missense_Mutation_p.R404K|PDE1C_uc003tcs.2_Missense_Mutation_p.R404K	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	404	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			CTCTGCTTCTCTGTCACCCTG	0.488													10	19					0	0	0.000673	0	0
AOAH	313	broad.mit.edu	37	7	36657942	36657942	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:36657942G>A	uc003tfh.3	-	10	1113	c.712C>T	c.(712-714)CCA>TCA	p.P238S	AOAH_uc010kxf.2_Missense_Mutation_p.P238S|AOAH_uc011kba.1_Missense_Mutation_p.P206S	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	238					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						CCATCTTTTGGATCGACACCC	0.318													17	26					0	0	0.001216	0	0
AOAH	313	broad.mit.edu	37	7	36726344	36726344	+	Silent	SNP	C	T	T	rs145856572	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:36726344C>T	uc003tfh.3	-	2	584	c.183G>A	c.(181-183)ACG>ACA	p.T61T	AOAH_uc010kxf.2_Silent_p.T61T|AOAH_uc011kba.1_Intron	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	61	Saposin B-type.				inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						AGGCCTGGACCGTCGAGTTGT	0.512													13	25					0	0	0.004007	0	0
GPR141	353345	broad.mit.edu	37	7	37780295	37780295	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:37780295C>T	uc003tfm.1	+	1	300	c.300C>T	c.(298-300)TAC>TAT	p.Y100Y	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	100	Helical; Name=3; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						TCCACATGTACCTCACGTTCC	0.463													22	33					0	0	0.001882	0	0
AMPH	273	broad.mit.edu	37	7	38431555	38431555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:38431555C>T	uc003tgu.2	-	19	1741	c.1672G>A	c.(1672-1674)GAA>AAA	p.E558K	AMPH_uc003tgv.2_Missense_Mutation_p.E516K|AMPH_uc003tgt.2_Missense_Mutation_p.E443K|AMPH_uc003tgw.1_Missense_Mutation_p.E581K|AMPH_uc010kxl.1_RNA	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	558					endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						ATAGTTATTTCGTTTTCTCCT	0.597													11	26					0	0	0.000978	0	0
POU6F2	11281	broad.mit.edu	37	7	39379484	39379484	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:39379484A>G	uc003thb.1	+	5	797	c.755A>G	c.(754-756)CAA>CGA	p.Q252R	POU6F2_uc010kxo.2_Missense_Mutation_p.Q244R	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	252	Pro-rich.|Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						cagcagcaccaaccccactcc	0.114													6	11					0	0	0.001984	0	0
POU6F2	11281	broad.mit.edu	37	7	39446295	39446295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:39446295C>T	uc003thb.1	+	6	1024	c.982C>T	c.(982-984)CTT>TTT	p.L328F		NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	328	Gln-rich.				central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CCTCTCCAGTCTTCAGGGGGT	0.517													16	26					0	0	0.003163	0	0
ADCY1	107	broad.mit.edu	37	7	45743273	45743273	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:45743273C>T	uc003tne.3	+	16	2664	c.2646C>T	c.(2644-2646)ATC>ATT	p.I882I		NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	882	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	ACTTCTACATCGAGCTGGACG	0.562													18	39					0	0	0.007413	0	0
PKD1L1	168507	broad.mit.edu	37	7	47969013	47969013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:47969013G>A	uc003tny.1	-	7	848	c.848C>T	c.(847-849)GCT>GTT	p.A283V		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	283	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						AGAATTTCGAGCTAGGATGGC	0.532													22	43					0	0	0.002780	0	0
HIP1	3092	broad.mit.edu	37	7	75221720	75221720	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:75221720G>A	uc003uds.1	-	3	338	c.297C>T	c.(295-297)TTC>TTT	p.F99F	HIP1_uc011kfz.1_5'UTR	NM_005338	NP_005329	O00291	HIP1_HUMAN	huntingtin interacting protein 1	99	ENTH.				activation of caspase activity|cell differentiation|clathrin coat assembly|endocytosis|induction of apoptosis|positive regulation of receptor-mediated endocytosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	clathrin coated vesicle membrane|cytoskeleton|Golgi apparatus|membrane fraction|nucleus	actin binding|clathrin binding|phosphatidylinositol binding|structural constituent of cytoskeleton			lung(3)|pancreas(2)|ovary(1)|breast(1)|central_nervous_system(1)	8						GGAGTTTGTGGAACACATGGC	0.592			T	PDGFRB	CMML								7	6					0	0	0.001984	0	0
CD36	948	broad.mit.edu	37	7	80276161	80276161	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:80276161G>A	uc003uhc.2	+	6	789	c.105G>A	c.(103-105)CAG>CAA	p.Q35Q	CD36_uc003uhd.3_Silent_p.Q35Q|CD36_uc011kgv.1_Intron|CD36_uc003uhe.3_Silent_p.Q35Q|CD36_uc003uhf.3_Silent_p.Q35Q|CD36_uc003uhg.3_Silent_p.Q35Q|CD36_uc003uhh.3_Silent_p.Q35Q	NM_001127444	NP_001120916	P16671	CD36_HUMAN	CD36 antigen	35	Extracellular (Potential).				cell adhesion|cGMP-mediated signaling|cholesterol transport|lipid metabolic process|lipid storage|lipoprotein transport|low-density lipoprotein particle clearance|nitric oxide mediated signal transduction|plasma membrane long-chain fatty acid transport|platelet activation|platelet degranulation|positive regulation of cell-matrix adhesion|positive regulation of macrophage derived foam cell differentiation	integral to plasma membrane|membrane fraction|platelet alpha granule membrane	lipid binding|low-density lipoprotein receptor activity|thrombospondin receptor activity|transforming growth factor beta binding			ovary(1)	1						TGCTTATCCAGAAGACAATTA	0.418													15	46					0	0	0.003163	0	0
PCLO	27445	broad.mit.edu	37	7	82474693	82474694	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:82474693_82474694CC>TT	uc003uhx.2	-	13	14228_14229	c.13939_13940GG>AA	c.(13939-13941)GGA>AAA	p.G4647K	PCLO_uc003uhv.2_Missense_Mutation_p.G4647K|PCLO_uc003uht.1_Missense_Mutation_p.G98K|PCLO_uc003uhu.1_Missense_Mutation_p.G77K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	4535					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AACATGAGATCCTTTTTCAACA	0.535													9	20					0	0	0.004672	0	0
PCLO	27445	broad.mit.edu	37	7	82545811	82545811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:82545811G>A	uc003uhx.2	-	7	11780	c.11491C>T	c.(11491-11493)CGT>TGT	p.R3831C	PCLO_uc003uhv.2_Missense_Mutation_p.R3831C|PCLO_uc010lec.2_Missense_Mutation_p.R796C	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3762					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ATGTAATCACGATCCTCAGCT	0.473													24	39					0	0	0.003954	0	0
PCLO	27445	broad.mit.edu	37	7	82579779	82579779	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:82579779G>A	uc003uhx.2	-	6	10414	c.10125C>T	c.(10123-10125)ACC>ACT	p.T3375T	PCLO_uc003uhv.2_Silent_p.T3375T|PCLO_uc010lec.2_Silent_p.T340T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3306					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGACTGAACGGTGTACCATC	0.458													10	16					0	0	0.006214	0	0
PCLO	27445	broad.mit.edu	37	7	82584294	82584294	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:82584294T>A	uc003uhx.2	-	5	6264	c.5975A>T	c.(5974-5976)AAG>ATG	p.K1992M	PCLO_uc003uhv.2_Missense_Mutation_p.K1992M	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1923					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						AAGTCTTATCTTTTGCTCTCT	0.378													50	101					0	0	0.003610	0	0
SEMA3E	9723	broad.mit.edu	37	7	83119493	83119493	+	Silent	SNP	G	A	A	rs146189665		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:83119493G>A	uc003uhy.1	-	2	679	c.213C>T	c.(211-213)TTC>TTT	p.F71F		NM_012431	NP_036563	O15041	SEM3E_HUMAN	semaphorin 3E precursor	71	Sema.				axon guidance	extracellular space|membrane	receptor activity			ovary(3)	3		Medulloblastoma(109;0.109)				TGCCTCCCACGAAGAGCCTCT	0.413													13	24					0	0	0.001855	0	0
ADAM22	53616	broad.mit.edu	37	7	87759715	87759715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:87759715C>T	uc003ujn.2	+	10	845	c.766C>T	c.(766-768)CGG>TGG	p.R256W	ADAM22_uc003ujj.1_Missense_Mutation_p.R256W|ADAM22_uc003ujk.1_Missense_Mutation_p.R256W|ADAM22_uc003ujl.1_Missense_Mutation_p.R256W|ADAM22_uc003ujm.2_Missense_Mutation_p.R256W|ADAM22_uc003ujo.2_Missense_Mutation_p.R256W|ADAM22_uc003ujp.1_Missense_Mutation_p.R308W	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1	256	Peptidase M12B.|Extracellular (Potential).				cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TAAAAAACATCGGCTTTCCGT	0.368													20	31					0	0	0.001882	0	0
STEAP4	79689	broad.mit.edu	37	7	87912231	87912231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:87912231G>A	uc003ujs.2	-	3	814	c.709C>T	c.(709-711)CGT>TGT	p.R237C	STEAP4_uc010lek.2_Intron|STEAP4_uc003ujt.2_Missense_Mutation_p.R237C	NM_024636	NP_078912	Q687X5	STEA4_HUMAN	tumor necrosis factor, alpha-induced protein 9	237					fat cell differentiation|ion transport|iron ion homeostasis	Golgi membrane|integral to membrane|plasma membrane	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	Esophageal squamous(14;0.00802)					ATAGCCATACGAAATGTATTA	0.363													16	36					0	0	0.006122	0	0
STEAP1	26872	broad.mit.edu	37	7	89791250	89791250	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:89791250C>T	uc003ujx.2	+	4	820	c.620C>T	c.(619-621)GCC>GTC	p.A207V	STEAP1_uc010lem.2_Missense_Mutation_p.A207V	NM_012449	NP_036581	Q9UHE8	STEA1_HUMAN	six transmembrane epithelial antigen of the	207	Ferric oxidoreductase.				electron transport chain|ion transport|iron ion homeostasis	cell-cell junction|endosome membrane|integral to plasma membrane	channel activity|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity				0	all_hematologic(106;0.112)					AAAGAAGATGCCTGGATTGAG	0.393													10	33					0	0	0.003954	0	0
SAMD9	54809	broad.mit.edu	37	7	92730882	92730882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:92730882G>A	uc003umf.2	-	3	4785	c.4529C>T	c.(4528-4530)TCC>TTC	p.S1510F	SAMD9_uc003umg.2_Missense_Mutation_p.S1510F	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	1510						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			CTGCCACAAGGAATTAATATC	0.358													5	25					0	0	0.000602	0	0
SLC25A13	10165	broad.mit.edu	37	7	95820540	95820540	+	Missense_Mutation	SNP	G	A	A	rs137944390		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:95820540G>A	uc003uof.3	-	7	826	c.635C>T	c.(634-636)TCC>TTC	p.S212F	SLC25A13_uc003uog.3_Missense_Mutation_p.S212F|SLC25A13_uc011kik.1_Missense_Mutation_p.S104F	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	212					ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	AACTTGATGGGATGTGGTACC	0.343													24	47					0	0	0.003330	0	0
TRRAP	8295	broad.mit.edu	37	7	98592250	98592251	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:98592250_98592251CC>TT	uc003upp.2	+	66	10255_10256	c.10046_10047CC>TT	c.(10045-10047)TCC>TTT	p.S3349F	TRRAP_uc011kis.1_Missense_Mutation_p.S3320F|TRRAP_uc003upr.2_Missense_Mutation_p.S3055F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3349					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			AAATGTTACTCCGTGGCGTTTG	0.54													40	88					0	0	0.004672	0	0
CYP3A5	1577	broad.mit.edu	37	7	99264624	99264624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:99264624C>T	uc003urq.2	-	5	470	c.383G>A	c.(382-384)AGA>AAA	p.R128K	ZNF498_uc003urn.2_Intron|CYP3A5_uc003urp.2_5'UTR|CYP3A5_uc003urr.2_Missense_Mutation_p.R15K|CYP3A5_uc011kiy.1_Missense_Mutation_p.R118K|CYP3A5_uc003urs.2_Intron|CYP3A5_uc010lgg.2_Intron	NM_000777	NP_000768	P20815	CP3A5_HUMAN	cytochrome P450, family 3, subfamily A,	128					alkaloid catabolic process|drug catabolic process|oxidative demethylation|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding				0	all_epithelial(64;2.77e-08)|Lung NSC(181;0.00396)|all_lung(186;0.00659)|Esophageal squamous(72;0.0166)				Alfentanil(DB00802)|Clopidogrel(DB00758)|Cyclosporine(DB00091)|Daunorubicin(DB00694)|Indinavir(DB00224)|Irinotecan(DB00762)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Mephenytoin(DB00532)|Midazolam(DB00683)|Mifepristone(DB00834)|Phenytoin(DB00252)|Quinine(DB00468)|Saquinavir(DB01232)|Tacrolimus(DB00864)|Troleandomycin(DB01361)|Verapamil(DB00661)|Vincristine(DB00541)	TGACCGTATTCTCTTCCATTC	0.388													19	30					0	0	0.001882	0	0
STAG3	10734	broad.mit.edu	37	7	99799849	99799849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:99799849G>A	uc003utx.1	+	24	2604	c.2449G>A	c.(2449-2451)GGG>AGG	p.G817R	STAG3_uc011kjk.1_Missense_Mutation_p.G759R|GATS_uc003uty.3_RNA|GATS_uc003utz.3_RNA|GATS_uc003uua.3_3'UTR|GATS_uc010lgt.2_RNA|STAG3_uc003uub.1_Missense_Mutation_p.G41R	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	817					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GATGATTGTTGGGGGCCGTGA	0.468													37	68					0	0	0.006999	0	0
MEPCE	56257	broad.mit.edu	37	7	100029261	100029261	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:100029261C>T	uc003uuw.2	+	1	1733	c.1620C>T	c.(1618-1620)CCC>CCT	p.P540P	ZCWPW1_uc003uut.2_5'Flank|ZCWPW1_uc011kjr.1_5'Flank|ZCWPW1_uc011kjt.1_5'Flank|ZCWPW1_uc011kju.1_5'Flank|MEPCE_uc003uuv.2_Silent_p.P71P	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	540	Bin3-type SAM.						methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					CCCAAGTGCCCTTGGATGGAG	0.607													5	20					0	0	0.000602	0	0
MEPCE	56257	broad.mit.edu	37	7	100030695	100030696	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:100030695_100030696CC>TT	uc003uuw.2	+	2	1938_1939	c.1825_1826CC>TT	c.(1825-1827)CCT>TTT	p.P609F	MEPCE_uc003uuv.2_Missense_Mutation_p.P140F	NM_019606	NP_062552	Q7L2J0	MEPCE_HUMAN	bin3, bicoid-interacting 3	609	Bin3-type SAM.						methyltransferase activity			upper_aerodigestive_tract(1)	1	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					GCACCTACGCCCTGGGGGCATC	0.579													13	36					0	0	0.004672	0	0
ACTL6B	51412	broad.mit.edu	37	7	100245114	100245115	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:100245114_100245115CC>TT	uc003uvy.2	-	8	818_819	c.711_712GG>AA	c.(709-714)AAGGAG>AAAAAG	p.E238K	ACTL6B_uc003uvx.1_Missense_Mutation_p.E29K|ACTL6B_uc003uvz.2_RNA	NM_016188	NP_057272	O94805	ACL6B_HUMAN	actin-like 6B	238					chromatin modification|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nBAF complex|SWI/SNF complex	ATP binding|protein binding|structural constituent of cytoskeleton			ovary(1)	1	Lung NSC(181;0.035)|all_lung(186;0.0509)|Esophageal squamous(72;0.0817)					GGTAGCTTCTCCTTCTTCTTCC	0.609													21	50					0	0	0.004672	0	0
EPHB4	2050	broad.mit.edu	37	7	100416162	100416162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:100416162C>T	uc003uwn.1	-	7	1893	c.1402G>A	c.(1402-1404)GAG>AAG	p.E468K	EPHB4_uc003uwm.1_Missense_Mutation_p.E375K|EPHB4_uc010lhj.1_Missense_Mutation_p.E468K|EPHB4_uc011kkf.1_Missense_Mutation_p.E468K|EPHB4_uc011kkg.1_Intron|EPHB4_uc011kkh.1_3'UTR	NM_004444	NP_004435	P54760	EPHB4_HUMAN	EPH receptor B4 precursor	468	Extracellular (Potential).|Fibronectin type-III 2.				cell proliferation|organ morphogenesis|regulation of angiogenesis	cell surface|integral to plasma membrane	ATP binding|ephrin receptor activity			lung(4)|stomach(3)|skin(3)|central_nervous_system(2)|ovary(2)|breast(1)	15	Lung NSC(181;0.041)|all_lung(186;0.0581)					TATTTGACCTCGTAGTCCAGC	0.612													5	15					0	0	0.001168	0	0
MYL10	93408	broad.mit.edu	37	7	101256766	101256766	+	Missense_Mutation	SNP	C	T	T	rs147592822	by1000genomes	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:101256766C>T	uc003uyr.2	-	8	848	c.670G>A	c.(670-672)GAG>AAG	p.E224K		NM_138403	NP_612412	Q9BUA6	MYL10_HUMAN	myosin, light chain 10, regulatory	224	EF-hand 3.					mitochondrion	calcium ion binding			ovary(1)|breast(1)	2						TAATCCTTCTCTTCACCGTGA	0.537													14	51					0	0	0.003163	0	0
LRWD1	222229	broad.mit.edu	37	7	102106642	102106642	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:102106642C>T	uc003uzn.2	+	3	495	c.357C>T	c.(355-357)CTC>CTT	p.L119L	ALKBH4_uc003uzl.2_5'Flank|ALKBH4_uc003uzm.2_5'Flank|LRWD1_uc003uzo.2_5'UTR	NM_152892	NP_690852	Q9UFC0	LRWD1_HUMAN	leucine-rich repeats and WD repeat domain	119					chromatin modification|DNA-dependent DNA replication initiation|establishment of protein localization to chromatin|G1 phase of mitotic cell cycle	centromeric heterochromatin|nuclear origin of replication recognition complex|telomeric heterochromatin	chromatin binding|methyl-CpG binding|methylated histone residue binding			skin(1)	1						TGCCCACGCTCCGTAAGGTCA	0.542													24	33					0	0	0.003954	0	0
TMEM168	64418	broad.mit.edu	37	7	112423923	112423923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:112423923G>A	uc003vgn.2	-	2	1350	c.958C>T	c.(958-960)CAT>TAT	p.H320Y	TMEM168_uc010lju.2_Missense_Mutation_p.H320Y|TMEM168_uc011kmr.1_Intron	NM_022484	NP_071929	Q9H0V1	TM168_HUMAN	transmembrane protein 168	320						integral to membrane|transport vesicle				ovary(1)|central_nervous_system(1)	2						AATTTGGTATGGAATCCCCAA	0.348													42	93					0	0	0.007835	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518910	113518910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:113518910G>A	uc010ljy.1	-	4	2268	c.2237C>T	c.(2236-2238)GCT>GTT	p.A746V		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	746					glycogen metabolic process	integral to membrane		p.A746A(1)		lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						TTTTTCTCTAGCAGACATGCT	0.433													17	48					0	0	0.004007	0	0
ASB15	142685	broad.mit.edu	37	7	123257671	123257671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:123257671G>A	uc003vku.1	+	7	623	c.331G>A	c.(331-333)GGA>AGA	p.G111R	ASB15_uc003vkv.1_Missense_Mutation_p.G111R|ASB15_uc003vkw.1_Missense_Mutation_p.G111R	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	111	ANK 1.				intracellular signal transduction					skin(2)|lung(1)	3						GACCTGTGATGGAGAAACACC	0.378													22	50					0	0	0.005443	0	0
SPAM1	6677	broad.mit.edu	37	7	123594421	123594421	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:123594421A>T	uc003vld.2	+	4	1199	c.797A>T	c.(796-798)AAC>ATC	p.N266I	SPAM1_uc003vle.2_Missense_Mutation_p.N266I|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.N266I|SPAM1_uc010lku.2_Missense_Mutation_p.N266I	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	266					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	ATTTATTTGAACACTCAGCAG	0.423													11	50					0	0	0.001368	0	0
FLNC	2318	broad.mit.edu	37	7	128490508	128490508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:128490508C>T	uc003vnz.3	+	32	5578	c.5369C>T	c.(5368-5370)CCC>CTC	p.P1790L	FLNC_uc003voa.3_Missense_Mutation_p.P1757L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1790	Filamin 16.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CTGGTCATCCCCTTCGCGGTG	0.542													41	58					0	0	0.002852	0	0
PLXNA4	91584	broad.mit.edu	37	7	131883317	131883317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:131883317C>T	uc003vra.3	-	13	2894	c.2665G>A	c.(2665-2667)GAC>AAC	p.D889N		NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	889	IPT/TIG 1.|Extracellular (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						GAGGCGATGTCGCGAAATTCC	0.562													27	35					0	0	0.001512	0	0
AKR1B1	231	broad.mit.edu	37	7	134134532	134134532	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:134134532G>A	uc003vrp.1	-	4	443	c.369C>T	c.(367-369)TTC>TTT	p.F123F	AKR1B1_uc003vrq.1_RNA	NM_001628	NP_001619	P15121	ALDR_HUMAN	aldo-keto reductase family 1, member B1	123					C21-steroid hormone biosynthetic process|carbohydrate metabolic process|response to stress	cytosol|extracellular space|nucleus	alditol:NADP+ 1-oxidoreductase activity|electron carrier activity|protein binding			ovary(3)	3					NADH(DB00157)|Sulindac(DB00605)	CATCCAATGGGAAAAATTCCT	0.468													42	81					0	0	0.003610	0	0
AKR1D1	6718	broad.mit.edu	37	7	137790091	137790091	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:137790091C>T	uc003vtz.2	+	5	564	c.495C>T	c.(493-495)TCC>TCT	p.S165S	AKR1D1_uc011kqb.1_Silent_p.S165S|AKR1D1_uc011kqc.1_RNA|AKR1D1_uc011kqd.1_RNA|AKR1D1_uc011kqe.1_Silent_p.S165S|AKR1D1_uc011kqf.1_Intron|AKR1D1_uc010lmy.1_RNA	NM_005989	NP_005980	P51857	AK1D1_HUMAN	aldo-keto reductase family 1, member D1	165					androgen metabolic process|bile acid biosynthetic process|bile acid catabolic process|C21-steroid hormone metabolic process|cholesterol catabolic process|digestion	cytosol	aldo-keto reductase (NADP) activity|delta4-3-oxosteroid 5beta-reductase activity|steroid binding			skin(1)	1						TGGTGAAATCCCTGGGAGTGT	0.483													33	81					0	0	0.002445	0	0
ATP6V0A4	50617	broad.mit.edu	37	7	138406667	138406667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:138406667C>T	uc003vuf.2	-	18	2352	c.2114G>A	c.(2113-2115)GGG>GAG	p.G705E	ATP6V0A4_uc003vug.2_Missense_Mutation_p.G705E|ATP6V0A4_uc003vuh.2_Missense_Mutation_p.G705E	NM_130841	NP_570856	Q9HBG4	VPP4_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit	705	Cytoplasmic (Potential).				cellular iron ion homeostasis|excretion|insulin receptor signaling pathway|ossification|regulation of pH|sensory perception of sound|transferrin transport	apical plasma membrane|brush border membrane|endosome membrane|integral to membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1						GTCCAGAGCCCCGTGGGTATC	0.483													11	25					0	0	0.001368	0	0
KIAA1549	57670	broad.mit.edu	37	7	138545892	138545892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:138545892G>A	uc011kql.1	-	16	5289	c.5240C>T	c.(5239-5241)CCC>CTC	p.P1747L	KIAA1549_uc011kqi.1_Missense_Mutation_p.P531L|KIAA1549_uc003vuk.3_Missense_Mutation_p.P1697L|KIAA1549_uc011kqj.1_Missense_Mutation_p.P1747L|KIAA1549_uc011kqk.1_Missense_Mutation_p.P531L	NM_020910	NP_065961	Q9HCM3	K1549_HUMAN	hypothetical protein LOC57670 isoform 1	1747						integral to membrane			KIAA1549/BRAF(229)	central_nervous_system(229)|pancreas(1)	230						TACACTGCAGGGATTGTTGGC	0.587			O	BRAF	pilocytic astrocytoma								16	43					0	0	0.007413	0	0
TBXAS1	6916	broad.mit.edu	37	7	139529266	139529266	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:139529266C>T	uc011kqv.1	+	1	244	c.80C>T	c.(79-81)GCC>GTC	p.A27V	TBXAS1_uc003vvh.2_Missense_Mutation_p.A27V|TBXAS1_uc010lne.2_Intron|TBXAS1_uc011kqu.1_Missense_Mutation_p.A27V|TBXAS1_uc003vvi.2_Missense_Mutation_p.A27V|TBXAS1_uc003vvj.2_Missense_Mutation_p.A27V|TBXAS1_uc011kqw.1_5'UTR|TBXAS1_uc011kqx.1_Missense_Mutation_p.A27V	NM_001130966	NP_001124438	P24557	THAS_HUMAN	thromboxane A synthase 1, platelet isoform	26	Helical; (Potential).				hormone biosynthetic process|prostaglandin biosynthetic process|xenobiotic metabolic process	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	electron carrier activity|heme binding|monooxygenase activity|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen|thromboxane-A synthase activity			ovary(2)|breast(1)	3	Melanoma(164;0.0142)					GCTCTCTTGGCCCTCCTGAAA	0.587													7	15					0	0	0.003080	0	0
JHDM1D	80853	broad.mit.edu	37	7	139791834	139791834	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:139791834G>A	uc003vvm.2	-	19	2505	c.2501C>T	c.(2500-2502)TCA>TTA	p.S834L	JHDM1D_uc010lng.2_RNA	NM_030647	NP_085150	Q6ZMT4	KDM7_HUMAN	jumonji C domain containing histone demethylase	834					midbrain development|transcription, DNA-dependent	nucleolus	histone demethylase activity (H3-K27 specific)|histone demethylase activity (H3-K36 specific)|histone demethylase activity (H3-K9 specific)|histone demethylase activity (H4-K20 specific)|iron ion binding|methylated histone residue binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|zinc ion binding			ovary(1)	1	Melanoma(164;0.0142)					ACTAATTTCTGATGAACCTTC	0.418													9	15					0	0	0.004482	0	0
CLEC5A	23601	broad.mit.edu	37	7	141631613	141631613	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:141631613T>C	uc003vwv.1	-	6	556	c.359A>G	c.(358-360)GAC>GGC	p.D120G	CLEC5A_uc011krm.1_Missense_Mutation_p.D97G|CLEC5A_uc003vww.1_Missense_Mutation_p.D119G|CLEC5A_uc010lnq.1_Missense_Mutation_p.D97G|CLEC5A_uc010lnr.1_RNA	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	120	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					ATCAGTTATGTCCTGAAGAAA	0.383													21	43					0	0	0.001523	0	0
MGAM	8972	broad.mit.edu	37	7	141750661	141750661	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:141750661G>A	uc003vwy.2	+	24	2856	c.2802G>A	c.(2800-2802)CTG>CTA	p.L934L		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	934	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	ATTCTAACCTGAAGGTAAAAA	0.428													20	41					0	0	0.001882	0	0
MGAM	8972	broad.mit.edu	37	7	141762467	141762467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:141762467C>T	uc003vwy.2	+	35	4276	c.4222C>T	c.(4222-4224)CCA>TCA	p.P1408S		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1408	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TCCACAGAATCCAGAGAGGAG	0.433													10	16					0	0	0.002450	0	0
PRSS1	5644	broad.mit.edu	37	7	142459670	142459670	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:142459670G>A	uc003wak.2	+	3	263	c.246G>A	c.(244-246)GAG>GAA	p.E82E	uc011krr.1_Intron|uc003vzp.2_Intron|uc011ksh.1_Intron|uc011ksi.1_Intron|uc003vzw.1_Intron|uc010loj.1_Intron|uc003wad.2_Intron|uc003wag.1_Intron|TRY6_uc011ksn.1_Intron|PRSS1_uc011ksm.1_3'UTR|PRSS1_uc003wam.2_Silent_p.E22E	NM_002769	NP_002760	P07477	TRY1_HUMAN	protease, serine, 1 preproprotein	82	Peptidase S1.				digestion|proteolysis	extracellular space	metal ion binding|protein binding|serine-type endopeptidase activity			large_intestine(1)|central_nervous_system(1)	2	Melanoma(164;0.047)	all_cancers(3;2.14e-49)|Acute lymphoblastic leukemia(3;7.3e-185)|all_hematologic(3;1.1e-165)	all cancers(2;0.000126)|Colorectal(2;0.000157)|Epithelial(2;0.000191)|COAD - Colon adenocarcinoma(2;0.00189)			AAGTCCTGGAGGGGAATGAGC	0.542									Hereditary_Pancreatitis				8	122					0	0	0.006214	0	0
OR9A2	135924	broad.mit.edu	37	7	142723527	142723527	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:142723527C>T	uc003wcc.1	-	1	693	c.693G>A	c.(691-693)AGG>AGA	p.R231R		NM_001001658	NP_001001658	Q8NGT5	OR9A2_HUMAN	olfactory receptor, family 9, subfamily A,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.059)					AGAAGGCTTTCCTCCGGCCAG	0.488													21	37					0	0	0.002780	0	0
CLCN1	1180	broad.mit.edu	37	7	143029561	143029561	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:143029561T>A	uc003wcr.1	+	11	1303	c.1216T>A	c.(1216-1218)TTC>ATC	p.F406I	CLCN1_uc011ktc.1_Missense_Mutation_p.F68I	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	406					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CTCATTCACCTTCCCACCAGG	0.483													24	45					0	0	0.007291	0	0
CLCN1	1180	broad.mit.edu	37	7	143029876	143029876	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:143029876G>A	uc003wcr.1	+	12	1398	c.1311G>A	c.(1309-1311)GCG>GCA	p.A437A	CLCN1_uc011ktc.1_Intron	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	437					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TGAAACACGCGGGTGATCCTG	0.527													49	65					0	0	0.003610	0	0
FAM115C	285966	broad.mit.edu	37	7	143421595	143421595	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:143421595C>T	uc003wdf.2	+	7	2393	c.2310C>T	c.(2308-2310)TTC>TTT	p.F770F	FAM115C_uc003wdg.2_Silent_p.F489F|FAM115C_uc011ktk.1_Silent_p.F770F|FAM115C_uc003wdh.2_Silent_p.F770F|FAM115C_uc011ktm.1_Silent_p.F770F|uc011ktn.1_Intron|uc011kto.1_Intron|uc011ktp.1_Intron|LOC154761_uc011ktq.1_Intron|LOC154761_uc011ktr.1_Intron|LOC154761_uc011kts.1_Intron|LOC154761_uc003wdj.1_Intron|FAM115C_uc011ktt.1_Silent_p.F666F|FAM115C_uc003wdi.1_Silent_p.F489F	NM_001130025	NP_001123497	A6NFQ2	F115C_HUMAN	hypothetical protein LOC285966 isoform A	770											0						GATGGGAGTTCCCCCCACACA	0.592													5	16					0	0	0.001984	0	0
FAM115A	9747	broad.mit.edu	37	7	143573477	143573478	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:143573477_143573478GG>AA	uc003wdo.1	-	2	357_358	c.224_225CC>TT	c.(223-225)CCC>CTT	p.P75L	FAM115A_uc011ktu.1_Intron|FAM115A_uc003wdp.1_Missense_Mutation_p.P75L	NM_014719	NP_055534	Q9Y4C2	F115A_HUMAN	hypothetical protein LOC9747	75											0	Melanoma(164;0.0903)					TCAGGAGAAAGGGCGTGAGCTG	0.609													7	17					0	0	0.004672	0	0
OR2A2	442361	broad.mit.edu	37	7	143807181	143807181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:143807181G>A	uc011ktz.1	+	1	506	c.506G>A	c.(505-507)GGG>GAG	p.G169E		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					CCCTTCTGTGGGCCCCGGGAT	0.527													31	42					0	0	0.001512	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829419	146829419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:146829419G>A	uc003weu.1	+	8	1682	c.1166G>A	c.(1165-1167)CGG>CAG	p.R389Q		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	389	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding	p.R389Q(1)		ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GTGCCCGGACGGCTTAACCAG	0.468										HNSCC(39;0.1)			22	39					0	0	0.002299	0	0
CNTNAP2	26047	broad.mit.edu	37	7	147844632	147844632	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:147844632G>A	uc003weu.1	+	17	3120	c.2604G>A	c.(2602-2604)GAG>GAA	p.E868E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	868	Laminin G-like 3.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			GGCCAGTAGAGATTGTAGTGA	0.512										HNSCC(39;0.1)			51	82					0	0	0.003610	0	0
ZNF425	155054	broad.mit.edu	37	7	148801972	148801972	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:148801972G>A	uc003wfj.2	-	4	1064	c.991C>T	c.(991-993)CAG>TAG	p.Q331*		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	331	C2H2-type 5.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			TGCGGACACTGGAAGGGCTTC	0.672													8	15					0	0	0.003080	0	0
ABP1	26	broad.mit.edu	37	7	150554030	150554030	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:150554030G>C	uc003why.1	+	3	4690	c.472G>C	c.(472-474)GCC>CCC	p.A158P	ABP1_uc003whz.1_Missense_Mutation_p.A158P|ABP1_uc003wia.1_Missense_Mutation_p.A158P	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	158					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	CCTGCAGGAAGCCACCAAGCC	0.612													16	28					0	0	0.004007	0	0
HTR5A	3361	broad.mit.edu	37	7	154876129	154876129	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr7:154876129C>T	uc003wlu.1	+	2	1070	c.1006C>T	c.(1006-1008)CTG>TTG	p.L336L		NM_024012	NP_076917	P47898	5HT5A_HUMAN	5-hydroxytryptamine receptor 5A	336	Helical; Name=7; (By similarity).					integral to plasma membrane	serotonin receptor activity			ovary(2)|large_intestine(1)	3	all_neural(206;0.119)	all_hematologic(28;0.0592)	OV - Ovarian serous cystadenocarcinoma(82;0.0238)	UCEC - Uterine corpus endometrioid carcinoma (81;0.171)		CTTTAACCCCCTGATCTATAC	0.488													32	72					0	0	0.003755	0	0
RP1L1	94137	broad.mit.edu	37	8	10465899	10465899	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:10465899T>C	uc003wtc.2	-	4	5938	c.5709A>G	c.(5707-5709)TCA>TCG	p.S1903S		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1903					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTGCACCTTCTGACTCTGGCT	0.587													48	36					0	0	0.003610	0	0
RP1L1	94137	broad.mit.edu	37	8	10467030	10467030	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:10467030C>T	uc003wtc.2	-	4	4807	c.4578G>A	c.(4576-4578)ACG>ACA	p.T1526T		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1526					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		AGGCCTTCTCCGTCTTCTTCA	0.662													12	9					0	0	0.003163	0	0
FGF20	26281	broad.mit.edu	37	8	16850656	16850656	+	Silent	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:16850656A>G	uc003wxc.1	-	3	694	c.561T>C	c.(559-561)TTT>TTC	p.F187F	FGF20_uc010lsv.1_RNA|FGF20_uc010lsw.1_3'UTR	NM_019851	NP_062825	Q9NP95	FGF20_HUMAN	fibroblast growth factor 20	187					cell-cell signaling|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway	extracellular region|soluble fraction	growth factor activity			lung(1)	1				Colorectal(111;0.0511)|COAD - Colon adenocarcinoma(73;0.207)		AGAAATGTGTAAATTTCTGAT	0.433													19	14					0	0	0.006122	0	0
PCM1	5108	broad.mit.edu	37	8	17883059	17883059	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:17883059C>T	uc003wyi.3	+	38	6363	c.5941C>T	c.(5941-5943)CTA>TTA	p.L1981L	PCM1_uc011kyh.1_Silent_p.L1973L|PCM1_uc003wyj.3_Silent_p.L1817L|PCM1_uc011kyi.1_Silent_p.L780L|PCM1_uc011kyj.1_Silent_p.L737L|PCM1_uc003wyk.3_Silent_p.L663L|PCM1_uc011kyk.1_Silent_p.L597L	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1981	Interaction with BBS4.				centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		AAAGGCAGATCTAAGAAAGAA	0.289			T	RET|JAK2	papillary thyroid|CML|MPD								5	3					0	0	0.000602	0	0
FAM160B2	64760	broad.mit.edu	37	8	21957256	21957256	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:21957256C>T	uc011kyx.1	+	10	1244	c.1193C>T	c.(1192-1194)GCC>GTC	p.A398V	FAM160B2_uc011kyy.1_RNA	NM_022749	NP_073586	Q86V87	F16B2_HUMAN	retinoic acid induced 16	398											0						CTCCTCACAGCCATGCTGCGC	0.682													5	8					0	0	0.000602	0	0
ADAM28	10863	broad.mit.edu	37	8	24209551	24209551	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:24209551C>G	uc003xdy.2	+	21	2313	c.2230C>G	c.(2230-2232)CCC>GCC	p.P744A	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.P431A	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	744	Cytoplasmic (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AGGCAATGAGCCCCCAGCCTC	0.403													24	18					0	0	0.007291	0	0
WRN	7486	broad.mit.edu	37	8	30938511	30938511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:30938511C>T	uc003xio.3	+	9	1756	c.968C>T	c.(967-969)TCA>TTA	p.S323L	WRN_uc011lbd.1_Missense_Mutation_p.S26L|WRN_uc011lbe.1_5'Flank	NM_000553	NP_000544	Q14191	WRN_HUMAN	Werner syndrome protein	323					base-excision repair|cellular response to starvation|DNA recombination|DNA synthesis involved in DNA repair|multicellular organismal aging|nucleolus to nucleoplasm transport|positive regulation of hydrolase activity|regulation of apoptosis|replication fork processing|response to oxidative stress|response to UV-C|telomere maintenance	centrosome|nucleolus|nucleoplasm	3'-5' exonuclease activity|ATP binding|ATP-dependent 3'-5' DNA helicase activity|bubble DNA binding|four-way junction helicase activity|G-quadruplex DNA binding|magnesium ion binding|manganese ion binding|protein complex binding|protein homodimerization activity|Y-form DNA binding			ovary(2)|kidney(2)|large_intestine(1)|lung(1)|skin(1)	7		Breast(100;0.195)		KIRC - Kidney renal clear cell carcinoma(542;0.147)|Kidney(114;0.176)|Colorectal(111;0.192)		TTTGAAGATTCAACTACTGGG	0.353			Mis|N|F|S			osteosarcoma|meningioma|others		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Werner_syndrome				14	8					0	0	0.002450	0	0
WHSC1L1	54904	broad.mit.edu	37	8	38133953	38133953	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:38133953C>T	uc003xli.2	-	23	4451	c.3933G>A	c.(3931-3933)AAG>AAA	p.K1311K	WHSC1L1_uc011lbm.1_Silent_p.K1300K|WHSC1L1_uc010lwe.2_Silent_p.K1262K|WHSC1L1_uc003xlh.2_Silent_p.K90K	NM_023034	NP_075447	Q9BZ95	NSD3_HUMAN	WHSC1L1 protein isoform long	1311					cell differentiation|cell growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome	histone-lysine N-methyltransferase activity|zinc ion binding			breast(1)	1	Colorectal(12;0.000442)|Esophageal squamous(3;0.0725)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.065)	Epithelial(3;3.12e-43)|all cancers(3;1.72e-38)|BRCA - Breast invasive adenocarcinoma(5;2.84e-27)|LUSC - Lung squamous cell carcinoma(2;2.79e-25)|Lung(2;5.03e-23)|COAD - Colon adenocarcinoma(9;0.0511)			CTGTTTTGATCTTTCGTCTCT	0.403			T	NUP98	AML								8	3					0	0	0.004482	0	0
C8orf4	56892	broad.mit.edu	37	8	40011065	40011065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:40011065G>A	uc003xnq.1	+	1	77	c.14G>A	c.(13-15)CGA>CAA	p.R5Q		NM_020130	NP_064515	Q9NR00	CH004_HUMAN	thyroid cancer-1	5					apoptosis					ovary(1)	1	Ovarian(28;0.0173)	all_cancers(7;5.34e-21)|all_epithelial(6;1.04e-14)|Lung NSC(58;9.35e-06)|all_lung(54;1.39e-05)|Hepatocellular(245;0.00745)|Breast(189;0.0334)|Colorectal(162;0.0815)|Myeloproliferative disorder(644;0.116)|Esophageal squamous(32;0.141)	LUSC - Lung squamous cell carcinoma(45;0.000149)	KIRC - Kidney renal clear cell carcinoma(67;0.0923)|Kidney(114;0.111)		AAAGCAAAGCGAAGCCACCAA	0.517													13	8					0	0	0.002450	0	0
ST18	9705	broad.mit.edu	37	8	53044647	53044647	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:53044647C>T	uc003xqz.2	-	17	2693	c.2537G>A	c.(2536-2538)AGA>AAA	p.R846K	ST18_uc011ldq.1_Missense_Mutation_p.R493K|ST18_uc011ldr.1_Missense_Mutation_p.R811K|ST18_uc011lds.1_Missense_Mutation_p.R751K|ST18_uc003xra.2_Missense_Mutation_p.R846K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	846						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CTCCTTCTGTCTCTTGGCAGC	0.522													13	51					0	0	0.001368	0	0
ST18	9705	broad.mit.edu	37	8	53076651	53076651	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:53076651C>T	uc003xqz.2	-	8	1452	c.1296_splice	c.e8-1	p.S432_splice	ST18_uc011ldq.1_Splice_Site_p.S79_splice|ST18_uc011ldr.1_Splice_Site_p.S397_splice|ST18_uc011lds.1_Splice_Site_p.S337_splice|ST18_uc003xra.2_Splice_Site_p.S432_splice|ST18_uc003xrb.2_Splice_Site_p.S432_splice	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18							nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				ACCAGAAAGACTGTTTAAAAA	0.408													20	96					0	0	0.001216	0	0
OPRK1	4986	broad.mit.edu	37	8	54142013	54142013	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:54142013G>A	uc003xrh.1	-	3	1362	c.987C>T	c.(985-987)CTC>CTT	p.L329L	OPRK1_uc003xri.1_Silent_p.L329L|OPRK1_uc010lyc.1_Silent_p.L240L	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	329	Helical; Name=7; (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	GAAAGGCGTAGAGAATGGGAT	0.517													8	33					0	0	0.003080	0	0
OPRK1	4986	broad.mit.edu	37	8	54142187	54142187	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:54142187C>T	uc003xrh.1	-	3	1188	c.813G>A	c.(811-813)AGG>AGA	p.R271R	OPRK1_uc003xri.1_Silent_p.R271R|OPRK1_uc010lyc.1_Silent_p.R182R	NM_000912	NP_000903	P41145	OPRK_HUMAN	opioid receptor, kappa 1	271	Cytoplasmic (Potential).				behavior|immune response|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception|synaptic transmission|viral genome replication	integral to plasma membrane	kappa-opioid receptor activity|protein binding			ovary(1)|skin(1)	2		all_epithelial(80;0.066)|Lung NSC(129;0.0804)|all_lung(136;0.136)			Buprenorphine(DB00921)|Butorphanol(DB00611)|Cocaine(DB00907)|Codeine(DB00318)|Dezocine(DB01209)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Meperidine(DB00454)|Mirtazapine(DB00370)|Morphine(DB00295)|Nalbuphine(DB00844)|Naltrexone(DB00704)|Oxycodone(DB00497)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Tramadol(DB00193)	GTCTGGTGATCCTACGCAGGT	0.572													13	38					0	0	0.002450	0	0
RP1	6101	broad.mit.edu	37	8	55538107	55538107	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:55538107G>A	uc003xsd.1	+	4	1813	c.1665G>A	c.(1663-1665)CAG>CAA	p.Q555Q	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	555					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TTACAAGTCAGAAGATGTTAG	0.343													10	49					0	0	0.001368	0	0
RP1	6101	broad.mit.edu	37	8	55540583	55540583	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:55540583A>C	uc003xsd.1	+	4	4289	c.4141A>C	c.(4141-4143)AAA>CAA	p.K1381Q	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1381					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CCCTGAATATAAAAATGGATT	0.328													25	48					0	0	0.003330	0	0
XKR4	114786	broad.mit.edu	37	8	56436480	56436480	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:56436480C>T	uc003xsf.2	+	3	1679	c.1647C>T	c.(1645-1647)ATC>ATT	p.I549I		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	549						integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			TACGGTCCATCTCCAACAACC	0.592													15	48					0	0	0.004990	0	0
CHD7	55636	broad.mit.edu	37	8	61735300	61735300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:61735300C>T	uc003xue.2	+	12	3673	c.3196C>T	c.(3196-3198)CCC>TCC	p.P1066S	CHD7_uc003xuf.2_Missense_Mutation_p.P179S	NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	1066	Helicase ATP-binding.				central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity			ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			CTTCAAAGATCCCCAGGTAAA	0.403													63	97					0	0	0.003610	0	0
CYP7B1	9420	broad.mit.edu	37	8	65527784	65527784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:65527784G>A	uc003xvj.2	-	4	1060	c.856C>T	c.(856-858)CAT>TAT	p.H286Y		NM_004820	NP_004811	O75881	CP7B1_HUMAN	cytochrome P450, family 7, subfamily B,	286					bile acid biosynthetic process|cell death|cholesterol metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	25-hydroxycholesterol 7alpha-hydroxylase activity|electron carrier activity|heme binding|oxysterol 7-alpha-hydroxylase activity			ovary(3)	3		all_cancers(86;0.217)|Lung NSC(129;0.0521)|all_lung(136;0.0906)|all_epithelial(80;0.215)				AAGCCTAAATGATGTGCTGGG	0.423													6	30					0	0	0.003080	0	0
TRIM55	84675	broad.mit.edu	37	8	67039668	67039668	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:67039668C>T	uc003xvv.2	+	1	391	c.165C>T	c.(163-165)TTC>TTT	p.F55F	TRIM55_uc003xvu.2_Silent_p.F55F|TRIM55_uc003xvw.2_Silent_p.F55F|TRIM55_uc003xvx.2_Silent_p.F55F	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	55	RING-type.					cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			GTGATATTTTCCAGGTAGGTT	0.438													42	211					0	0	0.003214	0	0
KCNB2	9312	broad.mit.edu	37	8	73850049	73850049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:73850049G>A	uc003xzb.2	+	3	3047	c.2459G>A	c.(2458-2460)GGG>GAG	p.G820E		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	820	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			GAGCTCCCAGGGGCAAGGGAG	0.507													13	66					0	0	0.001855	0	0
JPH1	56704	broad.mit.edu	37	8	75227679	75227679	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:75227679G>A	uc003yae.2	-	2	596	c.556C>T	c.(556-558)CCG>TCG	p.P186S	JPH1_uc003yaf.2_Missense_Mutation_p.P186S|JPH1_uc003yag.1_Missense_Mutation_p.P50S	NM_020647	NP_065698	Q9HDC5	JPH1_HUMAN	junctophilin 1	186	Cytoplasmic (Potential).				calcium ion transport into cytosol|regulation of ryanodine-sensitive calcium-release channel activity	integral to membrane|junctional membrane complex|junctional sarcoplasmic reticulum membrane|plasma membrane				ovary(1)	1	Breast(64;0.00576)		BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.0728)|all cancers(69;0.176)			GTGCCGGCCGGGCTGTCGGCG	0.701													4	24					0	0	0.000248	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618596	77618596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:77618596C>T	uc003yav.2	+	2	2660	c.2273C>T	c.(2272-2274)CCG>CTG	p.P758L	ZFHX4_uc003yat.1_Missense_Mutation_p.P758L|ZFHX4_uc003yau.1_Missense_Mutation_p.P758L|ZFHX4_uc003yaw.1_Missense_Mutation_p.P758L	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	758						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			ACACCCTCTCCGTCCAAACCC	0.522										HNSCC(33;0.089)			6	27					0	0	0.001168	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768148	77768148	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:77768148C>G	uc003yav.2	+	10	9243	c.8856C>G	c.(8854-8856)ATC>ATG	p.I2952M	ZFHX4_uc003yau.1_Missense_Mutation_p.I2997M|ZFHX4_uc003yaw.1_Missense_Mutation_p.I2952M	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2952						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTTTCATGATCAATCAAGGCG	0.473										HNSCC(33;0.089)			6	23					0	0	0.003080	0	0
SLC10A5	347051	broad.mit.edu	37	8	82606445	82606445	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:82606445A>G	uc011lfs.1	-	1	763	c.763T>C	c.(763-765)TAT>CAT	p.Y255H		NM_001010893	NP_001010893	Q5PT55	NTCP5_HUMAN	solute carrier family 10 (sodium/bile acid	255	Extracellular (Potential).					integral to membrane	bile acid:sodium symporter activity				0						CTGTATATATAAGAATTGACA	0.373													41	13					0	0	0.002222	0	0
PSKH2	85481	broad.mit.edu	37	8	87076519	87076519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:87076519G>A	uc011lfy.1	-	2	527	c.527C>T	c.(526-528)GCG>GTG	p.A176V		NM_033126	NP_149117	Q96QS6	KPSH2_HUMAN	protein serine kinase H2	176	Protein kinase.						ATP binding|protein serine/threonine kinase activity			stomach(2)|lung(2)|ovary(1)	5			STAD - Stomach adenocarcinoma(118;0.129)			TATCTGCAGCGCATGCAAATA	0.443													21	34					0	0	0.002299	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885999	88885999	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:88885999G>A	uc003ydz.2	-	1	298	c.201C>T	c.(199-201)TCC>TCT	p.S67S		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	67										ovary(1)	1						TTGCCAAAGAGGAGGGATCCC	0.517													14	38					0	0	0.004007	0	0
CALB1	793	broad.mit.edu	37	8	91072457	91072457	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:91072457C>T	uc003yel.1	-	11	912	c.730G>A	c.(730-732)GGA>AGA	p.G244R	CALB1_uc011lge.1_Missense_Mutation_p.G187R	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	244						nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			AGCTTCCCTCCATCCGACAAA	0.393													14	39					0	0	0.003163	0	0
TMEM67	91147	broad.mit.edu	37	8	94798460	94798460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:94798460C>T	uc011lgk.1	+	13	1369	c.1298C>T	c.(1297-1299)TCT>TTT	p.S433F	TMEM67_uc010mat.1_Missense_Mutation_p.S348F|TMEM67_uc010maw.2_Missense_Mutation_p.S139F|TMEM67_uc003yga.3_Missense_Mutation_p.S352F	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	433					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			GACAGCAACTCTGGAAAGTGG	0.348													12	33					0	0	0.004007	0	0
GEM	2669	broad.mit.edu	37	8	95264276	95264276	+	Nonsense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:95264276A>C	uc003ygj.2	-	4	833	c.584T>G	c.(583-585)TTA>TGA	p.L195*	GEM_uc003ygi.2_Nonsense_Mutation_p.L195*	NM_005261	NP_005252	P55040	GEM_HUMAN	GTP-binding mitogen-induced T-cell protein	195					cell surface receptor linked signaling pathway|immune response|small GTPase mediated signal transduction	internal side of plasma membrane	calmodulin binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding			lung(1)	1	Breast(36;4.65e-06)	Myeloproliferative disorder(644;0.204)	BRCA - Breast invasive adenocarcinoma(8;0.00691)			GCACCGCACTAAGTCACTTTT	0.517													32	16					0	0	0.006999	0	0
DPY19L4	286148	broad.mit.edu	37	8	95802125	95802125	+	Missense_Mutation	SNP	C	T	T	rs140198354		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:95802125C>T	uc003ygx.2	+	19	2283	c.2159C>T	c.(2158-2160)TCC>TTC	p.S720F		NM_181787	NP_861452	Q7Z388	D19L4_HUMAN	dpy-19-like 4	720						integral to membrane				ovary(2)	2	Breast(36;3.85e-06)					ACTGTGATATCCTTCCAGTCT	0.343													87	181					0	0	0.003610	0	0
SYBU	55638	broad.mit.edu	37	8	110598373	110598373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:110598373C>T	uc003ynj.3	-	4	609	c.446G>A	c.(445-447)AGC>AAC	p.S149N	SYBU_uc003yni.3_Missense_Mutation_p.S146N|SYBU_uc003ynk.3_Missense_Mutation_p.S30N|SYBU_uc010mco.2_Missense_Mutation_p.S148N|SYBU_uc003ynl.3_Missense_Mutation_p.S148N|SYBU_uc010mcp.2_Missense_Mutation_p.S149N|SYBU_uc010mcq.2_Missense_Mutation_p.S149N|SYBU_uc003yno.3_Missense_Mutation_p.S30N|SYBU_uc010mcr.2_Missense_Mutation_p.S149N|SYBU_uc003ynm.3_Missense_Mutation_p.S148N|SYBU_uc003ynn.3_Missense_Mutation_p.S148N|SYBU_uc010mcs.2_Missense_Mutation_p.S30N|SYBU_uc010mct.2_Missense_Mutation_p.S149N|SYBU_uc010mcu.2_Missense_Mutation_p.S148N|SYBU_uc003ynp.3_Missense_Mutation_p.S81N|SYBU_uc010mcv.2_Missense_Mutation_p.S149N|SYBU_uc011lhw.1_Missense_Mutation_p.S19N	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	149	Sufficient for interaction with KIF5B.|Ser-rich.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						GCTCGAGGAGCTAAAATCAGC	0.532													9	7					0	0	0.006214	0	0
CSMD3	114788	broad.mit.edu	37	8	113358332	113358332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:113358332C>T	uc003ynu.2	-	41	6595	c.6436G>A	c.(6436-6438)GGT>AGT	p.G2146S	CSMD3_uc003yns.2_Missense_Mutation_p.G1348S|CSMD3_uc003ynt.2_Missense_Mutation_p.G2106S|CSMD3_uc011lhx.1_Missense_Mutation_p.G2042S	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2146	Extracellular (Potential).|CUB 12.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATACCAAAACCTATGGGTAGA	0.343										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			44	24					0	0	0.003610	0	0
SAMD12	401474	broad.mit.edu	37	8	119391936	119391936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:119391936C>T	uc003yom.2	-	4	455	c.326G>A	c.(325-327)CGA>CAA	p.R109Q	SAMD12_uc010mda.1_Missense_Mutation_p.R109Q|SAMD12_uc010mdb.1_RNA	NM_207506	NP_997389	Q8N8I0	SAM12_HUMAN	sterile alpha motif domain containing 12 isoform	109	SAM.									ovary(1)	1	all_cancers(13;3.91e-25)|Lung NSC(37;1.13e-07)|Ovarian(258;0.0249)		STAD - Stomach adenocarcinoma(47;0.00391)			CAGCAGGGCTCGCCCTGCAGG	0.478													23	43					0	0	0.006320	0	0
FER1L6	654463	broad.mit.edu	37	8	125047600	125047600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:125047600G>A	uc003yqw.2	+	19	2575	c.2369G>A	c.(2368-2370)AGT>AAT	p.S790N	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	790	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AAGCATGCCAGTGCCATTTTG	0.537													23	72					0	0	0.004656	0	0
POU5F1B	5462	broad.mit.edu	37	8	128428624	128428624	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:128428624G>A	uc003ysf.2	+	1	768	c.513G>A	c.(511-513)CTG>CTA	p.L171L	uc003ysc.1_Intron|uc003ysd.1_Intron|LOC727677_uc003yse.1_Intron|uc011liu.1_5'Flank	NM_001159542	NP_001153014	Q06416	P5F1B_HUMAN	POU class 5 homeobox 1B	171	POU-specific.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GGCTCATCCTGGGGGTTCTAT	0.522													6	10					0	0	0.001168	0	0
FAM135B	51059	broad.mit.edu	37	8	139144922	139144922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:139144922C>T	uc003yuy.2	-	20	4306	c.4135G>A	c.(4135-4137)GGC>AGC	p.G1379S	FAM135B_uc003yux.2_Missense_Mutation_p.G1280S|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1379										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			GCGGCTCGGCCGATCAGGGTG	0.542										HNSCC(54;0.14)			60	190					0	0	0.003610	0	0
FAM135B	51059	broad.mit.edu	37	8	139160883	139160883	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:139160883C>T	uc003yuy.2	-	14	3499	c.3328G>A	c.(3328-3330)GGA>AGA	p.G1110R	FAM135B_uc003yux.2_Missense_Mutation_p.G1011R|FAM135B_uc003yuz.2_Intron|FAM135B_uc003yva.2_Missense_Mutation_p.G672R|FAM135B_uc003yvb.2_Intron	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1110										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TACAGAAATCCTTCAATCTTC	0.358										HNSCC(54;0.14)			9	20					0	0	0.000673	0	0
COL22A1	169044	broad.mit.edu	37	8	139715590	139715590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:139715590C>T	uc003yvd.2	-	31	2965	c.2518G>A	c.(2518-2520)GGT>AGT	p.G840S	COL22A1_uc011ljo.1_Missense_Mutation_p.G140S	NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	840	Pro-rich.|Gly-rich.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			CCAGCTTCACCCTAGATGGAG	0.458										HNSCC(7;0.00092)			14	46					0	0	0.003163	0	0
EIF2C2	27161	broad.mit.edu	37	8	141595379	141595379	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:141595379G>A	uc003yvn.2	-	2	94	c.54C>T	c.(52-54)ATC>ATT	p.I18I	EIF2C2_uc010men.2_Intron|EIF2C2_uc010meo.2_Silent_p.I18I	NM_012154	NP_036286	Q9UKV8	AGO2_HUMAN	argonaute 2 isoform 1	18					mRNA cleavage involved in gene silencing by miRNA|negative regulation of translation involved in gene silencing by miRNA|negative regulation of translational initiation|pre-miRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|mRNA cap binding complex|nucleus|polysome|RNA-induced silencing complex	endoribonuclease activity, cleaving siRNA-paired mRNA|metal ion binding|protein binding|RNA 7-methylguanosine cap binding|siRNA binding|translation initiation factor activity				0	all_cancers(97;2.54e-14)|all_epithelial(106;5.99e-13)|Lung NSC(106;1.45e-05)|all_lung(105;2.07e-05)|Ovarian(258;0.0154)|Acute lymphoblastic leukemia(118;0.155)	Breast(495;0.159)	BRCA - Breast invasive adenocarcinoma(115;0.158)			CATATCCTTGGATGGGGGGCG	0.577													51	34					0	0	0.003610	0	0
BAI1	575	broad.mit.edu	37	8	143602235	143602235	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:143602235C>T	uc003ywm.2	+	19	3156	c.2973C>T	c.(2971-2973)ATC>ATT	p.I991I		NM_001702	NP_001693	O14514	BAI1_HUMAN	brain-specific angiogenesis inhibitor 1	991	Helical; Name=2; (Potential).				axonogenesis|cell adhesion|negative regulation of angiogenesis|negative regulation of cell proliferation|neuropeptide signaling pathway|peripheral nervous system development	cell-cell junction|integral to plasma membrane	G-protein coupled receptor activity|protein binding			lung(3)|ovary(2)|breast(1)|central_nervous_system(1)|pancreas(1)	8	all_cancers(97;2.84e-12)|all_epithelial(106;5.91e-09)|Lung NSC(106;0.000322)|all_lung(105;0.000616)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0315)|Acute lymphoblastic leukemia(118;0.155)					GCCTGTCCATCATCTCCTCCA	0.577													21	32					0	0	0.002780	0	0
EPPK1	83481	broad.mit.edu	37	8	144945157	144945157	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:144945157C>T	uc003zaa.1	-	1	2278	c.2265G>A	c.(2263-2265)TTG>TTA	p.L755L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	755						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCAACAGGATCAAGTTCAGCA	0.637													26	99					0	0	0.001786	0	0
PLEC	5339	broad.mit.edu	37	8	144994766	144994766	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr8:144994766G>A	uc003zaf.1	-	32	9804	c.9634C>T	c.(9634-9636)CGG>TGG	p.R3212W	PLEC_uc003zab.1_Missense_Mutation_p.R3075W|PLEC_uc003zac.1_Missense_Mutation_p.R3079W|PLEC_uc003zad.2_Missense_Mutation_p.R3075W|PLEC_uc003zae.1_Missense_Mutation_p.R3043W|PLEC_uc003zag.1_Missense_Mutation_p.R3053W|PLEC_uc003zah.2_Missense_Mutation_p.R3061W|PLEC_uc003zaj.2_Missense_Mutation_p.R3102W	NM_201380	NP_958782	Q15149	PLEC_HUMAN	plectin isoform 1	3212	Globular 2.|Plectin 8.				cellular component disassembly involved in apoptosis|hemidesmosome assembly	cytosol|focal adhesion|hemidesmosome|intermediate filament cytoskeleton|sarcolemma	actin binding|structural constituent of muscle|structural constituent of muscle			large_intestine(2)|ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	9						ACGGTCAGCCGGGCGCTGGTG	0.657													6	35					0	0	0.001984	0	0
PTPRD	5789	broad.mit.edu	37	9	8375969	8375969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:8375969G>A	uc003zkk.2	-	38	5339	c.4628C>T	c.(4627-4629)CCT>CTT	p.P1543L	PTPRD_uc003zkp.2_Missense_Mutation_p.P1137L|PTPRD_uc003zkq.2_Missense_Mutation_p.P1136L|PTPRD_uc003zkr.2_Missense_Mutation_p.P1127L|PTPRD_uc003zks.2_Missense_Mutation_p.P1136L|PTPRD_uc003zkl.2_Missense_Mutation_p.P1534L|PTPRD_uc003zkm.2_Missense_Mutation_p.P1530L|PTPRD_uc003zkn.2_Missense_Mutation_p.P1132L|PTPRD_uc003zko.2_Missense_Mutation_p.P1133L	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1543	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 1.				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		AGCATCGGGAGGGTTACAGGT	0.468										TSP Lung(15;0.13)			22	18					0	0	0.002780	0	0
MPDZ	8777	broad.mit.edu	37	9	13119586	13119586	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:13119586C>G	uc010mia.1	-	38	5351	c.5294G>C	c.(5293-5295)AGA>ACA	p.R1765T	MPDZ_uc003zkx.3_Missense_Mutation_p.R30T|MPDZ_uc003zky.3_Missense_Mutation_p.R299T|MPDZ_uc010mib.2_Missense_Mutation_p.R470T|MPDZ_uc010mhx.2_Missense_Mutation_p.R587T|MPDZ_uc011lmm.1_Missense_Mutation_p.R624T|MPDZ_uc003zkz.3_Missense_Mutation_p.R458T|MPDZ_uc010mhy.2_Missense_Mutation_p.R1765T|MPDZ_uc010mhz.2_Missense_Mutation_p.R1732T|MPDZ_uc011lmn.1_Missense_Mutation_p.R1732T|MPDZ_uc003zlb.3_Missense_Mutation_p.R1765T	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1765	PDZ 11.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		CTGCATCAGTCTTCCATCGGC	0.413													29	26					0	0	0.001786	0	0
MPDZ	8777	broad.mit.edu	37	9	13119590	13119590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:13119590C>T	uc010mia.1	-	38	5347	c.5290G>A	c.(5290-5292)GGA>AGA	p.G1764R	MPDZ_uc003zkx.3_Missense_Mutation_p.G29R|MPDZ_uc003zky.3_Missense_Mutation_p.G298R|MPDZ_uc010mib.2_Missense_Mutation_p.G469R|MPDZ_uc010mhx.2_Missense_Mutation_p.G586R|MPDZ_uc011lmm.1_Missense_Mutation_p.G623R|MPDZ_uc003zkz.3_Missense_Mutation_p.G457R|MPDZ_uc010mhy.2_Missense_Mutation_p.G1764R|MPDZ_uc010mhz.2_Missense_Mutation_p.G1731R|MPDZ_uc011lmn.1_Missense_Mutation_p.G1731R|MPDZ_uc003zlb.3_Missense_Mutation_p.G1764R	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1764	PDZ 11.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		ATCAGTCTTCCATCGGCATCT	0.418													31	26					0	0	0.002445	0	0
MPDZ	8777	broad.mit.edu	37	9	13150678	13150678	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:13150678G>A	uc010mia.1	-	24	3519	c.3462C>T	c.(3460-3462)CTC>CTT	p.L1154L	MPDZ_uc010mhx.2_Silent_p.L46L|MPDZ_uc011lmm.1_Silent_p.L46L|MPDZ_uc003zkz.3_Intron|MPDZ_uc010mhy.2_Silent_p.L1154L|MPDZ_uc010mhz.2_Silent_p.L1154L|MPDZ_uc011lmn.1_Silent_p.L1154L|MPDZ_uc003zlb.3_Silent_p.L1154L	NM_003829	NP_003820	O75970	MPDZ_HUMAN	multiple PDZ domain protein	1154	PDZ 7.				interspecies interaction between organisms	apical plasma membrane|dendrite|postsynaptic density|postsynaptic membrane|synaptosome|tight junction	protein C-terminus binding			ovary(5)|central_nervous_system(1)	6				GBM - Glioblastoma multiforme(50;2.03e-06)		GTTCTCTCCAGAGTTCCACCC	0.289													5	7					0	0	0.000602	0	0
SLC24A2	25769	broad.mit.edu	37	9	19786753	19786753	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:19786753G>A	uc003zoa.1	-	1	174	c.112C>T	c.(112-114)CGA>TGA	p.R38*	SLC24A2_uc003zob.1_Nonsense_Mutation_p.R38*	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	38					visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		CCTAAGACTCGAATTAACTTC	0.443													33	35					0	0	0.002445	0	0
KIAA1797	54914	broad.mit.edu	37	9	20740333	20740333	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:20740333C>T	uc003zog.1	+	7	749	c.386C>T	c.(385-387)ACC>ATC	p.T129I		NM_017794	NP_060264	Q5VW36	K1797_HUMAN	hypothetical protein LOC54914	129						integral to membrane	binding			ovary(8)|breast(1)|kidney(1)	10				GBM - Glioblastoma multiforme(3;2.1e-125)|Lung(42;2.76e-14)|LUSC - Lung squamous cell carcinoma(42;1.99e-11)		AGTATATATACCATTAGGTAA	0.269													22	14					0	0	0.002780	0	0
CDKN2A	1029	broad.mit.edu	37	9	21974679	21974680	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:21974679_21974680GG>AA	uc003zpk.2	-	1	359_360	c.147_148CC>TT	c.(145-150)ATCCAG>ATTTAG	p.Q50*	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_Nonsense_Mutation_p.Q50*|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Intron	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	50	ANK 2.		Q -> R (in CMM2).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(25)|p.Q50*(5)|p.V28_V51del(1)|p.Q50R(1)|p.I49I(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		CTACCCACCTGGATCGGCCTCC	0.678		17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			91	81					0	0	0.004672	0	0
CCIN	881	broad.mit.edu	37	9	36170445	36170445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:36170445C>T	uc003zzb.3	+	1	1057	c.946C>T	c.(946-948)CGG>TGG	p.R316W		NM_005893	NP_005884	Q13939	CALI_HUMAN	calicin	316	Kelch 1.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			ovary(1)|skin(1)	2			STAD - Stomach adenocarcinoma(86;0.228)			CATGCCCTATCGGGCAGCAGC	0.547													18	10					0	0	0.004990	0	0
FAM74A3	728495	broad.mit.edu	37	9	40716266	40716266	+	RNA	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:40716266A>T	uc010mmk.2	+	1		c.743A>T				NR_026801				Homo sapiens family with sequence similarity 74, member A3 (FAM74A3), non-coding RNA.											skin(1)	1				GBM - Glioblastoma multiforme(29;0.02)|Lung(182;0.0681)		CATCAATTTTAGTAATTCAGG	0.428													7	45					0	0	0.004482	0	0
FOXD4L5	653427	broad.mit.edu	37	9	70177111	70177111	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:70177111C>T	uc010moc.2	-	1	1705	c.873G>A	c.(871-873)GCG>GCA	p.A291A		NM_001126334	NP_001119806	Q5VV16	FX4L5_HUMAN	forkhead box D4-like 5	291					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0						GTGCCGGGGTCGCCAGGTCCG	0.667													12	77					0	0	0.004656	0	0
TJP2	9414	broad.mit.edu	37	9	71861675	71861675	+	Missense_Mutation	SNP	A	T	T	rs75450131	byFrequency	TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:71861675A>T	uc004ahe.2	+	18	2836	c.2636A>T	c.(2635-2637)CAA>CTA	p.Q879L	TJP2_uc011lrs.1_Missense_Mutation_p.Q856L|TJP2_uc011lrt.1_Missense_Mutation_p.Q856L|TJP2_uc004ahd.2_Missense_Mutation_p.Q879L|TJP2_uc004ahf.2_Missense_Mutation_p.Q879L|TJP2_uc011lru.1_Missense_Mutation_p.Q883L|TJP2_uc011lrv.1_Missense_Mutation_p.Q901L|TJP2_uc010mom.1_Missense_Mutation_p.Q39L	NM_004817	NP_004808	Q9UDY2	ZO2_HUMAN	tight junction protein 2 (zona occludens 2)	879					cellular component disassembly involved in apoptosis	adherens junction|cytoplasm|nucleus|tight junction	guanylate kinase activity|protein binding				0						CAGCATCAGCAAGGAGAAGCG	0.423													13	54					0	0	0.001855	0	0
MAMDC2	256691	broad.mit.edu	37	9	72840934	72840934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:72840934G>A	uc004ahm.2	+	14	2664	c.2047G>A	c.(2047-2049)GAA>AAA	p.E683K	MAMDC2_uc004ahn.2_RNA|uc004ahq.1_Intron	NM_153267	NP_694999	Q7Z304	MAMC2_HUMAN	MAM domain containing 2 precursor	683						endoplasmic reticulum|membrane				central_nervous_system(1)|pancreas(1)	2						GGACTTAAATGAAATTGAGTA	0.294													12	50					0	0	0.003163	0	0
TRPM3	80036	broad.mit.edu	37	9	73150892	73150892	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:73150892T>C	uc004aid.2	-	25	5345	c.5101A>G	c.(5101-5103)AGC>GGC	p.S1701G	TRPM3_uc004ahu.2_Missense_Mutation_p.S1543G|TRPM3_uc004ahv.2_Missense_Mutation_p.S1503G|TRPM3_uc004ahw.2_Missense_Mutation_p.S1573G|TRPM3_uc004ahx.2_Missense_Mutation_p.S1560G|TRPM3_uc004ahy.2_Missense_Mutation_p.S1563G|TRPM3_uc004ahz.2_Missense_Mutation_p.S1550G|TRPM3_uc004aia.2_Missense_Mutation_p.S1548G|TRPM3_uc004aib.2_Missense_Mutation_p.S1538G|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1726	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						CTTTCAAAGCTTTGGAAAGCC	0.507													26	74					0	0	0.004656	0	0
TRPM3	80036	broad.mit.edu	37	9	73152011	73152011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:73152011G>A	uc004aid.2	-	25	4226	c.3982C>T	c.(3982-3984)CCA>TCA	p.P1328S	TRPM3_uc004ahu.2_Missense_Mutation_p.P1170S|TRPM3_uc004ahv.2_Missense_Mutation_p.P1130S|TRPM3_uc004ahw.2_Missense_Mutation_p.P1200S|TRPM3_uc004ahx.2_Missense_Mutation_p.P1187S|TRPM3_uc004ahy.2_Missense_Mutation_p.P1190S|TRPM3_uc004ahz.2_Missense_Mutation_p.P1177S|TRPM3_uc004aia.2_Missense_Mutation_p.P1175S|TRPM3_uc004aib.2_Missense_Mutation_p.P1165S|TRPM3_uc004aic.2_Intron	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	1353	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						ATTAAGGTTGGAGAAGTTGGG	0.453													25	93					0	0	0.003954	0	0
CEP78	84131	broad.mit.edu	37	9	80881427	80881427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:80881427C>T	uc004akx.2	+	15	2143	c.1867C>T	c.(1867-1869)CCA>TCA	p.P623S	CEP78_uc004aky.3_Missense_Mutation_p.P640S|CEP78_uc010mpp.2_Missense_Mutation_p.P624S|CEP78_uc004akz.1_Missense_Mutation_p.P111S	NM_032171	NP_115547	Q5JTW2	CEP78_HUMAN	centrosomal protein 78kDa isoform b	623					G2/M transition of mitotic cell cycle	centrosome|cytosol				ovary(1)	1						AGTTTCTACTCCAGAGGGCTT	0.438													18	36					0	0	0.001523	0	0
FLJ46321	389763	broad.mit.edu	37	9	84606346	84606346	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:84606346T>C	uc004amn.2	+	4	1008	c.961T>C	c.(961-963)TTG>CTG	p.L321L		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	321						integral to membrane					0						TCTCACCATCTTGAAGACTTT	0.478													41	111					0	0	0.006999	0	0
Unknown	0	broad.mit.edu	37	9	84675990	84675990	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:84675990G>A	uc010mpu.1	-	3	438	c.435C>T	c.(433-435)CCC>CCT	p.P145P		NM_001164339	NP_001157811			hypothetical protein LOC404770																		GCTTGGGTGAGGGGCGTTCTA	0.602													54	104					0	0	0.003610	0	0
GKAP1	80318	broad.mit.edu	37	9	86383826	86383826	+	Silent	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:86383826A>G	uc004amy.2	-	8	1141	c.645T>C	c.(643-645)GAT>GAC	p.D215D	GKAP1_uc004amz.2_Intron|GKAP1_uc011lsu.1_RNA	NM_025211	NP_079487	Q5VSY0	GKAP1_HUMAN	G kinase anchoring protein 1 isoform a	215					signal transduction	Golgi apparatus					0						TATGAACATCATCTTCCAGTC	0.333													14	26					0	0	0.001855	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536519	90536519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:90536519G>A	uc010mqi.2	+	4	1726	c.1697G>A	c.(1696-1698)GGA>GAA	p.G566E	FAM75C1_uc004apq.3_Missense_Mutation_p.G549E	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						AGTGACTCAGGAAGTGATTTA	0.517													37	64					0	0	0.001951	0	0
FAM75C1	441452	broad.mit.edu	37	9	90536663	90536663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:90536663C>T	uc010mqi.2	+	4	1870	c.1841C>T	c.(1840-1842)CCC>CTC	p.P614L	FAM75C1_uc004apq.3_Missense_Mutation_p.P597L	NM_001145124	NP_001138596			family with sequence similarity 75, member C1												0						CAGGCTTTTCCCGTATCCAAC	0.542													47	69					0	0	0.003610	0	0
S1PR3	1903	broad.mit.edu	37	9	91616748	91616748	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:91616748C>T	uc004aqe.2	+	2	1029	c.633C>T	c.(631-633)ATC>ATT	p.I211I		NM_005226	NP_005217	Q99500	S1PR3_HUMAN	sphingosine-1-phosphate receptor 3	211	Helical; Name=5; (By similarity).				anatomical structure morphogenesis|elevation of cytosolic calcium ion concentration|inflammatory response|positive regulation of cell proliferation	integral to plasma membrane	lipid binding|lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)|central_nervous_system(1)|skin(1)	5						TGGTGACCATCGTGATCCTCT	0.572											OREG0019291	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	34	56					0	0	0.007835	0	0
ECM2	1842	broad.mit.edu	37	9	95285032	95285032	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:95285032C>T	uc004ash.2	-	2	182	c.117G>A	c.(115-117)AGG>AGA	p.R39R	CENPP_uc004arz.2_Intron|CENPP_uc010mqx.2_Intron|ECM2_uc004asf.3_Silent_p.R39R|ECM2_uc011lty.1_Silent_p.R39R|ECM2_uc004asg.2_Silent_p.R39R|ECM2_uc011ltz.1_Silent_p.R39R|ECM2_uc004asi.2_Silent_p.R39R	NM_001393	NP_001384	O94769	ECM2_HUMAN	extracellular matrix protein 2 precursor	39					cell-matrix adhesion		integrin binding			ovary(1)|skin(1)	2						TTGAACTTTTCCTCAACCTTC	0.363													37	50					0	0	0.006999	0	0
NR4A3	8013	broad.mit.edu	37	9	102590451	102590451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:102590451G>A	uc004baf.1	+	3	856	c.127G>A	c.(127-129)GGC>AGC	p.G43S	NR4A3_uc004bae.2_Missense_Mutation_p.G43S|NR4A3_uc004bag.1_Missense_Mutation_p.G43S|NR4A3_uc004bai.2_Missense_Mutation_p.G54S	NM_006981	NP_008912	Q92570	NR4A3_HUMAN	nuclear receptor subfamily 4, group A, member 3	43					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor		steroid hormone receptor activity|thyroid hormone receptor activity|zinc ion binding		EWSR1/NR4A3(140)|TAF15/NR4A3(33)	bone(173)	173		Acute lymphoblastic leukemia(62;0.0559)|all_hematologic(171;0.189)				CATGGACCTTGGCAGCACTGA	0.577			T	EWSR1	extraskeletal myxoid chondrosarcoma								19	29					0	0	0.006122	0	0
C9orf125	84302	broad.mit.edu	37	9	104238586	104238586	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:104238586C>T	uc004bbm.2	-	2	1111	c.789G>A	c.(787-789)CTG>CTA	p.L263L	uc004bbl.1_5'Flank	NM_032342	NP_115718	Q9BRR3	CI125_HUMAN	hypothetical protein LOC84302	263	Helical; (Potential).					integral to membrane					0		Acute lymphoblastic leukemia(62;0.0527)				CAACCCATTCCAGGATCCGCA	0.537													29	37					0	0	0.007291	0	0
CYLC2	1539	broad.mit.edu	37	9	105767357	105767357	+	Silent	SNP	G	A	A	rs147375715		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:105767357G>A	uc004bbs.2	+	5	514	c.444G>A	c.(442-444)GAG>GAA	p.E148E		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	148	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				aggatatagagaaaggaaaag	0.114													6	7					0	0	0.001168	0	0
IKBKAP	8518	broad.mit.edu	37	9	111673345	111673345	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:111673345C>T	uc004bdm.3	-	12	1825	c.1305G>A	c.(1303-1305)AAG>AAA	p.K435K	IKBKAP_uc004bdl.2_Silent_p.K86K|IKBKAP_uc011lwc.1_Silent_p.K321K|IKBKAP_uc010mtq.2_Silent_p.K86K	NM_003640	NP_003631	O95163	ELP1_HUMAN	inhibitor of kappa light polypeptide gene	435					immune response|protein complex assembly|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	phosphorylase kinase regulator activity|protein binding|signal transducer activity			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|kidney(1)	7						GGTCATTACTCTTTTGAGGGT	0.443													25	38					0	0	0.006320	0	0
LPAR1	1902	broad.mit.edu	37	9	113703904	113703904	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:113703904T>C	uc004bfa.2	-	4	845	c.590A>G	c.(589-591)AAC>AGC	p.N197S	LPAR1_uc011lwm.1_Missense_Mutation_p.N198S|LPAR1_uc004bfb.2_Missense_Mutation_p.N197S|LPAR1_uc004bfc.2_Missense_Mutation_p.N197S|LPAR1_uc011lwn.1_Missense_Mutation_p.N179S|LPAR1_uc011lwo.1_Missense_Mutation_p.N198S|LPAR1_uc010mub.2_Missense_Mutation_p.N197S	NM_057159	NP_476500	Q92633	LPAR1_HUMAN	lysophosphatidic acid receptor 1	197	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	cell surface|integral to plasma membrane				ovary(2)	2						GGGTGCCATGTTGGAACAATT	0.463													18	40					0	0	0.001523	0	0
RGS3	5998	broad.mit.edu	37	9	116224415	116224415	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:116224415A>T	uc004bhq.2	+	4	558	c.349A>T	c.(349-351)AGA>TGA	p.R117*	RGS3_uc004bhr.2_5'Flank|RGS3_uc004bhs.2_5'Flank	NM_144488	NP_652759	P49796	RGS3_HUMAN	regulator of G-protein signalling 3 isoform 6	117					inactivation of MAPK activity|regulation of G-protein coupled receptor protein signaling pathway	cytosol|nucleus|plasma membrane	GTPase activator activity|signal transducer activity			ovary(1)|lung(1)|skin(1)	3						TCTGCCCAGAAGAGATGAGTG	0.547													34	39					0	0	0.003271	0	0
COL27A1	85301	broad.mit.edu	37	9	116999285	116999285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:116999285C>T	uc011lxl.1	+	18	2644	c.2644C>T	c.(2644-2646)CCC>TCC	p.P882S	COL27A1_uc004bii.2_RNA	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	882	Collagen-like 5.|Pro-rich.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						GCCAGGGTTCCCCGGTGCACG	0.612													8	19					0	0	0.006214	0	0
PAPPA	5069	broad.mit.edu	37	9	118982379	118982379	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:118982379C>T	uc004bjn.2	+	5	2463	c.2082C>T	c.(2080-2082)TTC>TTT	p.F694F	PAPPA_uc011lxp.1_Silent_p.F389F|PAPPA_uc011lxq.1_Intron	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	694					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TGGAGTGGTTCCCACCTATAG	0.557													24	59					0	0	0.003954	0	0
DBC1	1620	broad.mit.edu	37	9	122011343	122011343	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:122011343G>A	uc004bkc.2	-	3	760	c.304C>T	c.(304-306)CAA>TAA	p.Q102*	DBC1_uc004bkd.2_Nonsense_Mutation_p.Q102*	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	102	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						ATGCTCCTTTGAAACTCCGGC	0.552													18	23					0	0	0.006122	0	0
TTLL11	158135	broad.mit.edu	37	9	124794087	124794087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:124794087G>A	uc004blt.1	-	3	1066	c.878C>T	c.(877-879)ACC>ATC	p.T293I	TTLL11_uc011lyl.1_Missense_Mutation_p.T293I|TTLL11_uc004blr.2_Intron|TTLL11_uc011lym.1_Intron|TTLL11_uc004blu.1_Intron	NM_194252	NP_919228	Q8NHH1	TTL11_HUMAN	tubulin tyrosine ligase-like family, member 11	293	TTL.				protein modification process	cilium|microtubule basal body	tubulin-tyrosine ligase activity				0						ATTCTGCATGGTTCTCACTGC	0.498													20	48					0	0	0.001882	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377779	125377779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:125377779C>T	uc011lyy.1	+	1	763	c.763C>T	c.(763-765)CTC>TTC	p.L255F		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CTATGGCACCCTCAGTTGGGT	0.557													25	42					0	0	0.001786	0	0
OR1L3	26735	broad.mit.edu	37	9	125437507	125437507	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:125437507C>T	uc011lzb.1	+	1	99	c.99C>T	c.(97-99)ATC>ATT	p.I33I		NM_001005234	NP_001005234	Q8NH93	OR1L3_HUMAN	olfactory receptor, family 1, subfamily L,	33	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						TCTTTCTTATCATATACCTGG	0.443													29	68					0	0	0.007291	0	0
ZBTB26	57684	broad.mit.edu	37	9	125681566	125681566	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:125681566G>A	uc004bnj.2	-	2	860	c.648C>T	c.(646-648)CCC>CCT	p.P216P	ZBTB26_uc004bnk.2_Silent_p.P216P	NM_020924	NP_065975	Q9HCK0	ZBT26_HUMAN	zinc finger and BTB domain containing 26	216					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GGGAGTGCTGGGGCTCTGATG	0.378													11	33					0	0	0.000673	0	0
DENND1A	57706	broad.mit.edu	37	9	126554907	126554907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:126554907G>A	uc004bnz.1	-	3	324	c.91C>T	c.(91-93)CCT>TCT	p.P31S	DENND1A_uc004bny.1_5'UTR|DENND1A_uc011lzm.1_Intron|DENND1A_uc004boa.1_Missense_Mutation_p.P31S|DENND1A_uc004bob.1_Intron|DENND1A_uc004boc.2_Silent_p.I15I	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	31	UDENN.					cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						TGCACCTCAGGATCTGTAAAT	0.378													9	30					0	0	0.000673	0	0
ZNF79	7633	broad.mit.edu	37	9	130206352	130206352	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:130206352G>A	uc004bqw.3	+	5	787	c.373G>A	c.(373-375)GAA>AAA	p.E125K	ZNF79_uc011maf.1_Missense_Mutation_p.E101K|ZNF79_uc011mag.1_Missense_Mutation_p.E101K	NM_007135	NP_009066	Q15937	ZNF79_HUMAN	zinc finger protein 79	125					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1						AGCCCTTTCTGAAGCTTCATT	0.483													26	44					0	0	0.007291	0	0
FAM102A	399665	broad.mit.edu	37	9	130710456	130710457	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:130710456_130710457GG>AA	uc004bsx.1	-	6	588_589	c.509_510CC>TT	c.(508-510)TCC>TTT	p.S170F	FAM102A_uc004bsw.1_Missense_Mutation_p.S28F|FAM102A_uc004bsy.1_5'UTR	NM_001035254	NP_001030331	Q5T9C2	F102A_HUMAN	early estrogen-induced gene 1 protein isoform a	170	Ser-rich.									ovary(1)	1						TCAGCTGCAGGGAGGAATCCTG	0.619													12	29					0	0	0.004672	0	0
C9orf50	375759	broad.mit.edu	37	9	132377835	132377835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:132377835G>A	uc004byc.3	-	4	1010	c.808C>T	c.(808-810)CCT>TCT	p.P270S	C9orf50_uc004byb.3_RNA	NM_199350	NP_955382	Q5SZB4	CI050_HUMAN	hypothetical protein LOC375759	270										ovary(1)|central_nervous_system(1)	2		Ovarian(14;0.00556)				ACCCGGAAAGGGCAACGCTGC	0.662													16	42					0	0	0.006122	0	0
PRDM12	59335	broad.mit.edu	37	9	133543581	133543581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:133543581G>A	uc004bzt.1	+	3	511	c.451G>A	c.(451-453)GAT>AAT	p.D151N		NM_021619	NP_067632	Q9H4Q4	PRD12_HUMAN	PR domain containing 12	151	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_hematologic(13;0.0433)|Acute lymphoblastic leukemia(5;0.0534)		OV - Ovarian serous cystadenocarcinoma(145;0.000344)		CTACTTCATCGATGCCAGCCA	0.517													14	29					0	0	0.001855	0	0
GTF3C5	9328	broad.mit.edu	37	9	135919197	135919197	+	Silent	SNP	C	T	T	rs151291681		TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:135919197C>T	uc004cci.3	+	3	793	c.456C>T	c.(454-456)CTC>CTT	p.L152L	GTF3C5_uc010mzz.2_Silent_p.L27L|GTF3C5_uc004ccj.3_Silent_p.L152L	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	152						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		TGCTCATGCTCCGGCCCGAGA	0.587													18	43					0	0	0.001216	0	0
ADAMTS13	11093	broad.mit.edu	37	9	136321696	136321696	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:136321696C>T	uc004cdv.3	+	27	4191	c.3747C>T	c.(3745-3747)ACC>ACT	p.T1249T	ADAMTS13_uc004cdp.3_Silent_p.T420T|ADAMTS13_uc004cdt.1_Silent_p.T1193T|ADAMTS13_uc004cdu.1_Silent_p.T1162T|ADAMTS13_uc004cdw.3_Silent_p.T1193T|ADAMTS13_uc004cdx.3_Silent_p.T1162T|ADAMTS13_uc004cdz.3_Silent_p.T919T|ADAMTS13_uc004cea.1_Silent_p.T45T|ADAMTS13_uc004ceb.3_Silent_p.T45T	NM_139025	NP_620594	Q76LX8	ATS13_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1249	CUB 1.				cell-matrix adhesion|glycoprotein metabolic process|integrin-mediated signaling pathway|peptide catabolic process|platelet activation|protein processing|proteolysis	cell surface|proteinaceous extracellular matrix	calcium ion binding|integrin binding|metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|kidney(1)	6				OV - Ovarian serous cystadenocarcinoma(145;1.06e-07)|Epithelial(140;1.28e-06)|all cancers(34;1.46e-05)		GCCGGCTCACCTGGAGGAAGA	0.582													6	21					0	0	0.000673	0	0
NOTCH1	4851	broad.mit.edu	37	9	139413214	139413214	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:139413214C>T	uc004chz.2	-	6	928	c.928G>A	c.(928-930)GGG>AGG	p.G310R		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	310	Extracellular (Potential).|EGF-like 8; calcium-binding (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity	p.G310R(2)		haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		TGGCAGGTCCCGCCGTTCTGG	0.627			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			14	16					0	0	0.001855	0	0
MXRA5	25878	broad.mit.edu	37	X	3261829	3261829	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:3261829G>A	uc004crg.3	-	2	203	c.46C>T	c.(46-48)CTG>TTG	p.L16L		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	16						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				CCCCAAAGCAGGATCAGCACC	0.642													9	4					0	0	0.000673	0	0
FAM9C	171484	broad.mit.edu	37	X	13061897	13061897	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:13061897C>T	uc004cvh.1	-	2	222	c.12G>A	c.(10-12)AAG>AAA	p.K4K	FAM9C_uc004cvg.2_Silent_p.K4K	NM_174901	NP_777561	Q8IZT9	FAM9C_HUMAN	family with sequence similarity 9, member C	4						nucleus					0						CCAACTGGTCCTTGGCAGCCA	0.592													7	2					0	0	0.003080	0	0
ATXN3L	92552	broad.mit.edu	37	X	13337352	13337352	+	Silent	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:13337352T>C	uc010ned.2	-	1	1167	c.702A>G	c.(700-702)GAA>GAG	p.E234E		NM_001135995	NP_001129467	Q9H3M9	ATX3L_HUMAN	ataxin 3-like	234	UIM 1.				protein deubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ubiquitin-specific protease activity			lung(2)|ovary(2)|large_intestine(1)|skin(1)	6						GGCGGCTTAGTTCAAGGGCCC	0.423													123	51					0	0	0.003610	0	0
PHKA2	5256	broad.mit.edu	37	X	18963270	18963270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:18963270C>T	uc004cyv.3	-	6	974	c.544G>A	c.(544-546)GGA>AGA	p.G182R	PHKA2_uc010nfh.1_RNA|PHKA2_uc010nfi.1_Missense_Mutation_p.G124R	NM_000292	NP_000283	P46019	KPB2_HUMAN	phosphorylase kinase, alpha 2 (liver)	182					glucose metabolic process|glycogen catabolic process	cytosol|phosphorylase kinase complex|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(1)|central_nervous_system(1)	2	Hepatocellular(33;0.183)					TCCCACATTCCATAATCCTGG	0.473													15	5					0	0	0.002450	0	0
MAP3K15	389840	broad.mit.edu	37	X	19380929	19380929	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:19380929C>T	uc004czk.1	-	27	3668	c.2031G>A	c.(2029-2031)CAG>CAA	p.Q677Q	MAP3K15_uc004czj.1_Silent_p.Q637Q|MAP3K15_uc004czi.1_Silent_p.Q136Q	NM_001001671	NP_001001671	Q6ZN16	M3K15_HUMAN	mitogen-activated protein kinase kinase kinase	1202	Potential.						ATP binding|MAP kinase kinase kinase activity|metal ion binding	p.Q677R(1)		ovary(3)|lung(2)|stomach(1)|skin(1)	7	Hepatocellular(33;0.183)					GCAGAAGATTCTGGTACTCTC	0.328													26	21					0	0	0.005443	0	0
SH3KBP1	30011	broad.mit.edu	37	X	19713797	19713797	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:19713797G>A	uc004czm.2	-	5	769	c.453C>T	c.(451-453)TTC>TTT	p.F151F	SH3KBP1_uc004czl.2_Silent_p.F114F	NM_031892	NP_114098	Q96B97	SH3K1_HUMAN	SH3-domain kinase binding protein 1 isoform a	151	SH3 2.				apoptosis|cell-cell signaling|endocytosis|epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytoplasmic vesicle membrane|cytoskeleton|cytosol|focal adhesion|nucleus|synapse|synaptosome	SH3 domain binding				0						GCTCCTTGATGAAGTTGGAAG	0.498													26	14					0	0	0.004656	0	0
PTCHD1	139411	broad.mit.edu	37	X	23398131	23398131	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:23398131G>A	uc004dal.3	+	2	783	c.775G>A	c.(775-777)GAA>AAA	p.E259K	PTCHD1_uc010nfu.1_Missense_Mutation_p.E259K	NM_173495	NP_775766	Q96NR3	PTHD1_HUMAN	patched domain containing 1	259					cognition|smoothened signaling pathway	integral to membrane|plasma membrane	hedgehog receptor activity			ovary(4)|kidney(1)|skin(1)	6						CTCACTGAGGGAAGATTTCCA	0.517													40	9					0	0	0.006230	0	0
FAM47A	158724	broad.mit.edu	37	X	34148540	34148540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:34148540C>T	uc004ddg.2	-	1	1889	c.1856G>A	c.(1855-1857)GGA>GAA	p.G619E		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	619										ovary(4)|central_nervous_system(1)	5						TTCATCAGCTCCCAGGTCTCC	0.433													21	8					0	0	0.003954	0	0
FAM47B	170062	broad.mit.edu	37	X	34961360	34961360	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:34961360G>A	uc004ddi.1	+	1	430	c.412G>A	c.(412-414)GGA>AGA	p.G138R		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	138										ovary(3)|breast(1)	4						CCCCAATCTGGGAAAAGATAT	0.572													22	6					0	0	0.003954	0	0
GATA1	2623	broad.mit.edu	37	X	48650336	48650336	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:48650336G>A	uc004dkq.3	+	3	397	c.306G>A	c.(304-306)GGG>GGA	p.G102G		NM_002049	NP_002040	P15976	GATA1_HUMAN	GATA binding protein 1	102					basophil differentiation|eosinophil differentiation|erythrocyte development|megakaryocyte differentiation|platelet aggregation|platelet formation|positive regulation of anti-apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|regulation of glycoprotein biosynthetic process|transcription from RNA polymerase II promoter	nuclear membrane|nucleolus|nucleoplasm	C2H2 zinc finger domain binding|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding	p.?(2)|p.V74_C199del(1)|p.V77_A120>A(1)		haematopoietic_and_lymphoid_tissue(246)|lung(2)	248						GCAAGACGGGGCTCTACCCTG	0.607			Mis|F		megakaryoblastic leukemia of Downs Syndrome								14	4					0	0	0.001855	0	0
CCNB3	85417	broad.mit.edu	37	X	50051652	50051652	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:50051652G>A	uc004dox.3	+	6	781	c.483G>A	c.(481-483)AAG>AAA	p.K161K	CCNB3_uc004doy.2_Silent_p.K161K|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	161					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					TAGTTTTAAAGGAGGAACCCA	0.403													23	5					0	0	0.003954	0	0
DGKK	139189	broad.mit.edu	37	X	50127723	50127723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:50127723C>T	uc010njr.1	-	16	2507	c.2447G>A	c.(2446-2448)CGA>CAA	p.R816Q		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	816					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					CTTACGGCGTCGTGGGCTTGT	0.398													44	14					0	0	0.003214	0	0
PAGE2B	389860	broad.mit.edu	37	X	55103945	55103945	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:55103945G>A	uc004due.2	+	4	359	c.307G>A	c.(307-309)GTG>ATG	p.V103M		NM_001015038	NP_001015038	Q5JRK9	GGEE3_HUMAN	P antigen family, member 2B	103											0						TCTCACTAAAGTGCTGGAAGC	0.393													35	17					0	0	0.007835	0	0
TEX11	56159	broad.mit.edu	37	X	69774522	69774522	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:69774522T>C	uc004dyl.2	-	27	2476	c.2314A>G	c.(2314-2316)AAA>GAA	p.K772E	TEX11_uc004dyk.2_Missense_Mutation_p.K447E|TEX11_uc004dym.2_Missense_Mutation_p.K757E	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	772							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TCAAAAGTTTTAGTTTCTAAA	0.363													8	5					0	0	0.004482	0	0
TEX11	56159	broad.mit.edu	37	X	70073179	70073179	+	Splice_Site	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:70073179C>T	uc004dyl.2	-	7	532	c.370_splice	c.e7-1	p.M124_splice	TEX11_uc004dym.2_Splice_Site_p.M109_splice	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1								protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TCATATTCATCTAGAAGAGAG	0.348													8	1					0	0	0.003080	0	0
GJB1	2705	broad.mit.edu	37	X	70443915	70443915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:70443915G>A	uc004dzf.3	+	2	453	c.358G>A	c.(358-360)GTG>ATG	p.V120M	BCYRN1_uc011mpt.1_Intron|GJB1_uc004dzg.3_Missense_Mutation_p.V120M	NM_001097642	NP_001091111	P08034	CXB1_HUMAN	gap junction protein, beta 1, 32kDa	120	Cytoplasmic (Probable).		V -> E (in CMTX1).|Missing (in CMTX1).		cell-cell signaling|cellular membrane organization|gap junction assembly|nervous system development	connexon complex|endoplasmic reticulum membrane|integral to membrane	gap junction channel activity			breast(1)	1	Renal(35;0.156)					CCTGGAGGAGGTGAAGAGGCA	0.562													6	1					0	0	0.001984	0	0
TAF1	6872	broad.mit.edu	37	X	70683687	70683687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:70683687G>A	uc004dzu.3	+	38	5461	c.5410G>A	c.(5410-5412)GAG>AAG	p.E1804K	BCYRN1_uc011mpt.1_Intron|TAF1_uc004dzt.3_Missense_Mutation_p.E1825K|TAF1_uc004dzv.3_Missense_Mutation_p.E1012K|TAF1_uc010nle.1_Intron|TAF1_uc010nlf.1_Intron|TAF1_uc004dzx.2_Intron|TAF1_uc004dzy.2_Intron|TAF1_uc004dzw.1_Intron|TAF1_uc010nlg.1_Intron	NM_138923	NP_620278	P21675	TAF1_HUMAN	TBP-associated factor 1 isoform 2	1804	Asp/Glu-rich (acidic tail).|Protein kinase 2.				G1 phase of mitotic cell cycle|interspecies interaction between organisms|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription initiation from RNA polymerase II promoter|protein autophosphorylation|regulation of transcription involved in G2/M-phase of mitotic cell cycle|RNA polymerase II transcriptional preinitiation complex assembly|transcription elongation from RNA polymerase II promoter|viral reproduction	MLL1 complex|transcription factor TFIID complex	ATP binding|histone acetyl-lysine binding|histone acetyltransferase activity|p53 binding|protein binding|protein serine/threonine kinase activity|sequence-specific DNA binding|TBP-class protein binding|transcription coactivator activity			ovary(7)|breast(4)|large_intestine(2)|central_nervous_system(2)|lung(1)|skin(1)	17	Renal(35;0.156)	all_lung(315;0.000321)				TGGGAGCTATGAGGAGCCTGA	0.428													13	1					0	0	0.002450	0	0
OGT	8473	broad.mit.edu	37	X	70781708	70781708	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:70781708C>T	uc004eaa.1	+	15	2152	c.1935C>T	c.(1933-1935)GGC>GGT	p.G645G	BCYRN1_uc011mpt.1_Intron|OGT_uc004eab.1_Silent_p.G635G|OGT_uc004eac.2_Silent_p.G506G|OGT_uc004ead.2_Silent_p.G264G	NM_181672	NP_858058	O15294	OGT1_HUMAN	O-linked GlcNAc transferase isoform 1	645					cellular response to retinoic acid|positive regulation of granulocyte differentiation|positive regulation of histone H3-K4 methylation|positive regulation of proteolysis|protein O-linked glycosylation|signal transduction	cytosol|MLL5-L complex	enzyme activator activity|protein binding|protein N-acetylglucosaminyltransferase activity			ovary(3)|kidney(1)|pancreas(1)	5	Renal(35;0.156)					ATACTAAGGGCGCTCGAAATG	0.383													15	7					0	0	0.004990	0	0
ACRC	93953	broad.mit.edu	37	X	70817802	70817803	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:70817802_70817803CC>TT	uc004eae.2	+	7	725_726	c.224_225CC>TT	c.(223-225)TCC>TTT	p.S75F	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	75						nucleus				ovary(3)	3	Renal(35;0.156)					TCACTCAGCTCCGTGGTAGTGA	0.401													4	10					0	0	0.004672	0	0
NOX1	27035	broad.mit.edu	37	X	100105197	100105197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:100105197C>T	uc004egj.2	-	9	1282	c.1076G>A	c.(1075-1077)GGG>GAG	p.G359E	NOX1_uc004egl.3_Missense_Mutation_p.G359E|NOX1_uc010nne.2_Missense_Mutation_p.G322E	NM_007052	NP_008983	Q9Y5S8	NOX1_HUMAN	NADPH oxidase 1 isoform long	359	FAD-binding FR-type.|Extracellular (Potential).				angiogenesis|cell migration|electron transport chain|FADH2 metabolic process|hydrogen peroxide metabolic process|inflammatory response|intracellular pH elevation|positive regulation of integrin biosynthetic process|positive regulation of smooth muscle cell proliferation|positive regulation vascular endothelial growth factor production|respiratory burst|response to pH|signal transduction|superoxide anion generation	cell junction|early endosome|invadopodium membrane|NADPH oxidase complex	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|Rac GTPase binding|superoxide-generating NADPH oxidase activity|voltage-gated proton channel activity			ovary(1)	1						TGTCCAGTCCCCTGCTGCTCG	0.473													20	4					0	0	0.003330	0	0
ARMCX1	51309	broad.mit.edu	37	X	100808374	100808374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:100808374C>T	uc004ehv.2	+	4	832	c.461C>T	c.(460-462)CCC>CTC	p.P154L	ARMCX1_uc004ehw.2_Missense_Mutation_p.P154L	NM_016608	NP_057692	Q9P291	ARMX1_HUMAN	armadillo repeat containing, X-linked 1	154						integral to membrane	binding			ovary(3)|pancreas(1)	4						GGCTGCCACCCCACCAGGAGT	0.622													23	9					0	0	0.003954	0	0
NXF3	56000	broad.mit.edu	37	X	102338552	102338552	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:102338552G>A	uc004eju.2	-	4	491	c.420C>T	c.(418-420)CCC>CCT	p.P140P	NXF3_uc010noi.1_5'UTR|NXF3_uc011mrw.1_Silent_p.P140P|NXF3_uc011mrx.1_Silent_p.P51P	NM_022052	NP_071335	Q9H4D5	NXF3_HUMAN	nuclear RNA export factor 3	140	RRM.					cytoplasm|nuclear RNA export factor complex	nucleocytoplasmic transporter activity|nucleotide binding|protein binding			ovary(1)|lung(1)|central_nervous_system(1)	3						CTGGGACGAAGGGTACACTGC	0.453													50	22					0	0	0.003610	0	0
NRK	203447	broad.mit.edu	37	X	105137869	105137869	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:105137869G>A	uc004emd.2	+	6	726	c.423G>A	c.(421-423)GTG>GTA	p.V141V	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	141	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						CTGATGTAGTGAGAATGACCA	0.383										HNSCC(51;0.14)			15	5					0	0	0.004990	0	0
SERPINA7	6906	broad.mit.edu	37	X	105278308	105278308	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:105278308A>C	uc004eme.1	-	3	978	c.962T>G	c.(961-963)TTG>TGG	p.L321W	SERPINA7_uc010npd.2_Missense_Mutation_p.L321W	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	321					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GCCCATCTTCAAAAGTGTGGC	0.408													27	14					0	0	0.006320	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450057	105450057	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:105450057A>G	uc004emf.1	+	4	1281	c.632A>G	c.(631-633)AAG>AGG	p.K211R	MUM1L1_uc004emg.1_Missense_Mutation_p.K211R	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	211										ovary(2)|pancreas(1)|skin(1)	4						AACAAGAATAAGATTGATATC	0.383													12	2					0	0	0.001368	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450194	105450194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:105450194G>A	uc004emf.1	+	4	1418	c.769G>A	c.(769-771)GAG>AAG	p.E257K	MUM1L1_uc004emg.1_Missense_Mutation_p.E257K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	257										ovary(2)|pancreas(1)|skin(1)	4						TTTGAAAGAAGAGAGCGAGGA	0.453													8	4					0	0	0.003080	0	0
IRS4	8471	broad.mit.edu	37	X	107979390	107979390	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:107979390G>A	uc004eoc.2	-	1	218	c.185C>T	c.(184-186)TCC>TTC	p.S62F		NM_003604	NP_003595	O14654	IRS4_HUMAN	insulin receptor substrate 4	62						plasma membrane	insulin receptor binding|SH3/SH2 adaptor activity|signal transducer activity			ovary(4)|large_intestine(2)|lung(1)|breast(1)|skin(1)|pancreas(1)	10						GTCTGACCGGGAGCCAGTGGC	0.652													12	4					0	0	0.002450	0	0
DCX	1641	broad.mit.edu	37	X	110574251	110574251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:110574251C>T	uc004epd.2	-	5	1242	c.1070G>A	c.(1069-1071)GGA>GAA	p.G357E	DCX_uc011msv.1_Missense_Mutation_p.G357E|DCX_uc004epe.2_Missense_Mutation_p.G276E|DCX_uc004epf.2_Missense_Mutation_p.G276E|DCX_uc004epg.2_Missense_Mutation_p.G276E	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	357					axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						TGATGGGTTTCCCTTCATGAC	0.532													34	11					0	0	0.004878	0	0
AMOT	154796	broad.mit.edu	37	X	112024185	112024185	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:112024185T>A	uc004epr.2	-	9	2402	c.2402A>T	c.(2401-2403)CAC>CTC	p.H801L	AMOT_uc004eps.2_Missense_Mutation_p.H392L|AMOT_uc011mtc.1_Missense_Mutation_p.H41L|hsa-mir-4329|MI0015901_5'Flank	NM_001113490	NP_001106962	Q4VCS5	AMOT_HUMAN	angiomotin isoform 1	801					actin cytoskeleton organization|cell-cell junction assembly|negative regulation of angiogenesis|negative regulation of vascular permeability|positive regulation of blood vessel endothelial cell migration|positive regulation of cell size|positive regulation of stress fiber assembly|regulation of cell migration	actin filament|cell surface|cytoplasm|endocytic vesicle|external side of plasma membrane|integral to membrane|lamellipodium|ruffle|stress fiber|tight junction|tight junction	angiostatin binding|protein binding|receptor activity			ovary(1)	1						GGTGGATGAGTGGGAGAGCAA	0.537													43	16					0	0	0.002222	0	0
KIAA1210	57481	broad.mit.edu	37	X	118221261	118221261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:118221261G>A	uc004era.3	-	11	3932	c.3932C>T	c.(3931-3933)TCC>TTC	p.S1311F		NM_020721	NP_065772	Q9ULL0	K1210_HUMAN	hypothetical protein LOC57481	1311										ovary(4)|skin(1)	5						AGAAACAGGGGAGACTTTTTG	0.493													59	34					0	0	0.003610	0	0
GRIA3	2892	broad.mit.edu	37	X	122598946	122598946	+	Silent	SNP	T	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:122598946T>A	uc004etq.3	+	14	2600	c.2307T>A	c.(2305-2307)CCT>CCA	p.P769P	GRIA3_uc004etr.3_Silent_p.P769P|GRIA3_uc004ets.3_RNA	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	769	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TGGCAACCCCTAAAGGCTCAG	0.403													31	9					0	0	0.003271	0	0
BCORL1	63035	broad.mit.edu	37	X	129147484	129147484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:129147484C>T	uc004evb.1	+	4	850	c.736C>T	c.(736-738)CCA>TCA	p.P246S	BCORL1_uc010nrd.1_Missense_Mutation_p.P148S	NM_021946	NP_068765	Q5H9F3	BCORL_HUMAN	BCL6 co-repressor-like 1	246	Pro-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus				ovary(4)|breast(2)|lung(1)	7						CACTTCGGTTCCAGCTCCTTC	0.617													42	13					0	0	0.003610	0	0
ARHGAP36	158763	broad.mit.edu	37	X	130217842	130217842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:130217842G>A	uc004evz.2	+	4	799	c.454G>A	c.(454-456)GGA>AGA	p.G152R	ARHGAP36_uc004ewa.2_Missense_Mutation_p.G140R|ARHGAP36_uc004ewb.2_Missense_Mutation_p.G121R|ARHGAP36_uc004ewc.2_Missense_Mutation_p.G16R	NM_144967	NP_659404	Q6ZRI8	RHG36_HUMAN	hypothetical protein LOC158763 precursor	152	Arg-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(3)	3						CCGTCGTCGGGGAAACGTGGT	0.632													24	10					0	0	0.002299	0	0
IGSF1	3547	broad.mit.edu	37	X	130415851	130415851	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:130415851G>A	uc004ewd.2	-	8	1552	c.1314C>T	c.(1312-1314)ACC>ACT	p.T438T	IGSF1_uc004ewe.3_Silent_p.T427T|IGSF1_uc004ewf.2_Silent_p.T418T	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	438	Extracellular (Potential).|Ig-like C2-type 5.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						GGCACTGAAGGGTGATGGCCT	0.468													7	3					0	0	0.001984	0	0
IGSF1	3547	broad.mit.edu	37	X	130416704	130416704	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:130416704G>A	uc004ewd.2	-	7	1198	c.960C>T	c.(958-960)TTC>TTT	p.F320F	IGSF1_uc004ewe.3_Silent_p.F309F|IGSF1_uc004ewf.2_Silent_p.F300F	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	320	Extracellular (Potential).				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						AGGTCTTGGGGAAAGTGTCTA	0.512													15	6					0	0	0.006122	0	0
MIR542	664617	broad.mit.edu	37	X	133675433	133675433	+	RNA	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:133675433C>T	hsa-mir-542|MI0003686	-			c.35C>T			MIR450B_hsa-mir-450b|MI0005531_5'Flank|MIR450A1_hsa-mir-450a-1|MI0001652_5'Flank|uc011mvl.1_5'Flank|MIR450A2_hsa-mir-450a-2|MI0003187_5'Flank																	0						ACTGGTATCTCGTGACATGAT	0.418													45	36					0	0	0.003610	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994681	140994681	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:140994681T>G	uc004fbt.2	+	4	1777	c.1491T>G	c.(1489-1491)AGT>AGG	p.S497R	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	497							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TTTTCCAGAGTTCCCCTGAGT	0.498										HNSCC(15;0.026)			58	27					0	0	0.003610	0	0
L1CAM	3897	broad.mit.edu	37	X	153134070	153134071	+	Silent	DNP	GG	AA	AA			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:153134070_153134071GG>AA	uc004fjb.2	-	12	1599_1600	c.1491_1492CC>TT	c.(1489-1494)TGCCTG>TGTTTG	p.497_498CL>CL	L1CAM_uc004fjc.2_Silent_p.497_498CL>CL|L1CAM_uc010nuo.2_Silent_p.492_493CL>CL|L1CAM_uc004fjd.1_Silent_p.311_312CL>CL	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	497_498	Extracellular (Potential).|Ig-like C2-type 5.				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TTGGCAGCCAGGCAGAAGTAGC	0.554													20	4					0	0	0.004672	0	0
CTAG2	30848	broad.mit.edu	37	X	153880851	153880851	+	Silent	SNP	G	A	A			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:153880851G>A	uc004fmi.1	-	2	377	c.324C>T	c.(322-324)ATC>ATT	p.I108I	CTAG2_uc004fmh.1_Silent_p.I108I	NM_020994	NP_066274	O75638	CTAG2_HUMAN	cancer/testis antigen 2 isoform LAGE-1b	108						centrosome				pancreas(1)	1	all_cancers(53;5.05e-16)|all_epithelial(53;1.87e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CCCGGGACAGGATCCTGCGGA	0.612													22	7					0	0	0.003330	0	0
DKC1	1736	broad.mit.edu	37	X	153995642	153995642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:153995642C>T	uc004fmm.2	+	7	835	c.625C>T	c.(625-627)CCT>TCT	p.P209S	DKC1_uc010nvf.2_Missense_Mutation_p.P209S|SNORA36A_uc004fmn.2_5'Flank	NM_001363	NP_001354	O60832	DKC1_HUMAN	dyskerin isoform 1	209					cell proliferation|pseudouridine synthesis|rRNA processing|telomere maintenance via telomerase	Cajal body|nucleolus|telomerase holoenzyme complex	protein binding|pseudouridine synthase activity|RNA binding|telomerase activity				0	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGAATACGATCCTGAAAGAAG	0.443									Congenital_Dyskeratosis				36	13					0	0	0.006999	0	0
BRCC3	79184	broad.mit.edu	37	X	154348417	154348417	+	Silent	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrX:154348417C>T	uc004fna.2	+	11	1036	c.943C>T	c.(943-945)CTA>TTA	p.L315L	BRCC3_uc004fnb.2_Silent_p.L290L	NM_024332	NP_077308	P46736	BRCC3_HUMAN	BRCA1/BRCA2-containing complex, subunit 3	315					double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|positive regulation of DNA repair|response to X-ray	BRCA1-A complex|BRISC complex|nuclear ubiquitin ligase complex	enzyme regulator activity|metal ion binding|metallopeptidase activity|polyubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(3)|ovary(1)|large_intestine(1)|breast(1)	6	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					ACTTTCTTCTCTAGAATAAAT	0.403													49	16					0	0	0.003610	0	0
RPS4Y2	140032	broad.mit.edu	37	Y	22923205	22923205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chrY:22923205C>T	uc011nbb.1	+	4	394	c.298C>T	c.(298-300)CGC>TGC	p.R100C		NM_001039567	NP_001034656	Q8TD47	RS4Y2_HUMAN	ribosomal protein S4, Y-linked 2	100	S4 RNA-binding.				translation	ribosome	rRNA binding|structural constituent of ribosome				0						TGAGCATTTCCGCCTGGTCTA	0.423													12	10					0	0	0.003163	0	0
STAB2	55576	broad.mit.edu	37	12	104031013	104031013	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr12:104031013delC	uc001tjw.2	+	7	894	c.708delC	c.(706-708)GACfs	p.D236fs		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	236	Extracellular (Potential).|EGF-like 3.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						AATACTGCGACCGTGAGTAGA	0.388													16	34	---	---	---	---					
MAP1A	4130	broad.mit.edu	37	15	43817125	43817130	+	In_Frame_Del	DEL	TCCCTC	-	-			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr15:43817125_43817130delTCCCTC	uc001zrt.2	+	4	3921_3926	c.3454_3459delTCCCTC	c.(3454-3459)TCCCTCdel	p.SL1152del		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	1152_1153						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	AGATGCAGAATCCCTCTCTGTCCTCA	0.553													11	36	---	---	---	---					
CDYL2	124359	broad.mit.edu	37	16	80638416	80638416	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr16:80638416delG	uc002ffs.2	-	7	1495	c.1390delC	c.(1390-1392)CGGfs	p.R464fs		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	464						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						AGGAAGCTCCGCACGAGGCAT	0.547													58	84	---	---	---	---					
ZNF714	148206	broad.mit.edu	37	19	21300286	21300286	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr19:21300286delT	uc002npo.3	+	6	1179	c.819delT	c.(817-819)ACTfs	p.T273fs	ZNF714_uc002npl.2_Frame_Shift_Del_p.T118fs|ZNF714_uc010ecp.1_Frame_Shift_Del_p.T224fs|ZNF714_uc002npn.2_RNA	NM_182515	NP_872321	Q96N38	ZN714_HUMAN	zinc finger protein 714	273	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAGCCCTTACTACACATAAGT	0.348													2	4	---	---	---	---					
FAM117B	150864	broad.mit.edu	37	2	203620370	203620370	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr2:203620370delT	uc010zhx.1	+	5	1080	c.1070delT	c.(1069-1071)ATTfs	p.I357fs		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	357										ovary(1)	1						GAAATAATAATTAAAGAGACT	0.368													76	156	---	---	---	---					
SAMHD1	25939	broad.mit.edu	37	20	35555605	35555612	+	Frame_Shift_Del	DEL	GAGCAAGT	-	-			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr20:35555605_35555612delGAGCAAGT	uc002xgh.1	-	6	799_806	c.669_676delACTTGCTC	c.(667-678)CCACTTGCTCGCfs	p.P223fs		NM_015474	NP_056289	Q9Y3Z3	SAMH1_HUMAN	SAM domain- and HD domain-containing protein 1	223_226	HD.				defense response to virus|innate immune response|regulation of innate immune response	nucleus	metal ion binding|phosphoric diester hydrolase activity				0		Myeloproliferative disorder(115;0.00878)				ACCTCCGGGCGAGCAAGTGGAATAAATC	0.351													7	64	---	---	---	---					
PBX3	5090	broad.mit.edu	37	9	128692021	128692022	+	Frame_Shift_Del	DEL	AT	-	-			TCGA-EE-A29V-06A-12D-A197-08	TCGA-EE-A29V-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	f14401f0-c522-4c0b-b496-bf696e643db7	fb4fbd0e-f121-41ab-9139-0f9b1ca23682	g.chr9:128692021_128692022delAT	uc004bqb.2	+	4	720_721	c.604_605delAT	c.(604-606)ATGfs	p.M202fs	PBX3_uc004bqc.2_Frame_Shift_Del_p.M21fs|PBX3_uc004bqd.2_Frame_Shift_Del_p.M21fs|PBX3_uc011lzw.1_Frame_Shift_Del_p.M127fs|PBX3_uc011lzx.1_Frame_Shift_Del_p.M113fs|PBX3_uc004bqe.2_Frame_Shift_Del_p.M89fs	NM_006195	NP_006186	P40426	PBX3_HUMAN	pre-B-cell leukemia homeobox 3 isoform 1	202					anterior compartment pattern formation|posterior compartment specification		sequence-specific DNA binding transcription factor activity			upper_aerodigestive_tract(1)	1						GATTGAAAGAATGGTGGGCATC	0.396													28	40	---	---	---	---					
