Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TP73	7161	broad.mit.edu	37	1	3599693	3599693	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:3599693G>A	uc001akp.2	+	3	245	c.135G>A	c.(133-135)ACG>ACA	p.T45T	TP73_uc001akq.2_Silent_p.T45T	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	45	Asp/Glu-rich (acidic).|Transactivation (By similarity).				cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		TGGGCGGAACGGATTCCAGCA	0.582000													13	66					0	0	0.000151284	0	0
NBPF1	55672	broad.mit.edu	37	1	16902933	16902934	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:16902933_16902934GG>TT	uc009vos.1	-	19	2835_2836	c.1947_1948CC>AA	c.(1945-1950)ACCCAG>ACAAAG	p.Q650K	NBPF1_uc009vot.1_Intron|NBPF1_uc001ayz.1_Missense_Mutation_p.Q108K|NBPF1_uc010oce.1_Missense_Mutation_p.Q379K	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	650	Potential.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		TCCCTTAACTGGGTCAGCTCTC	0.510000													10	340					0	0	6.4e-05	0	0
CAMK2N1	55450	broad.mit.edu	37	1	20811832	20811833	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:20811832_20811833GG>AA	uc001bdh.2	-	1	896_897	c.40_41CC>TT	c.(40-42)CCC>TTC	p.P14F	CAMK2N1_uc001bdg.2_5'Flank	NM_018584	NP_061054	Q7Z7J9	CK2N1_HUMAN	calcium/calmodulin-dependent protein kinase II	14						cell junction|postsynaptic density|postsynaptic membrane|synaptosome					0		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000247)|Lung NSC(340;0.000285)|Breast(348;0.0013)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|COAD - Colon adenocarcinoma(152;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000132)|Kidney(64;0.00016)|GBM - Glioblastoma multiforme(114;0.00116)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.195)		GTCGCCGTAGGGGCTCAGCTTC	0.500000													4	9					0	0	6.4e-05	0	0
CSMD2	114784	broad.mit.edu	37	1	34192215	34192215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:34192215C>T	uc001bxn.1	-	16	2349	c.2320G>A	c.(2320-2322)GAT>AAT	p.D774N	CSMD2_uc001bxm.1_Missense_Mutation_p.D814N	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	774	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTCAAGGCATCCTTGTAGAAG	0.617000													7	28					0	0	8.12818e-05	0	0
MACF1	23499	broad.mit.edu	37	1	39801578	39801578	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:39801578C>T	uc010oiu.1	+	1	4769	c.4638C>T	c.(4636-4638)ACC>ACT	p.T1546T	MACF1_uc010ois.1_Intron|MACF1_uc001cda.1_Intron|MACF1_uc001cdc.1_Intron|MACF1_uc001cdb.1_Intron	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	3111					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			CTTGTATGACCCCAAGACCTG	0.438000													14	55					0	0	0.000308642	0	0
DEPDC1	55635	broad.mit.edu	37	1	68960118	68960118	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:68960118G>A	uc001dem.3	-	2	426	c.309C>T	c.(307-309)CTC>CTT	p.L103L	DEPDC1_uc001dek.3_RNA|DEPDC1_uc001del.3_Silent_p.L103L|uc001den.2_5'Flank	NM_001114120	NP_001107592	Q5TB30	DEP1A_HUMAN	DEP domain containing 1 isoform a	103	DEP.				intracellular signal transduction|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	transcriptional repressor complex	GTPase activator activity|protein binding				0				OV - Ovarian serous cystadenocarcinoma(397;7.21e-36)		ATTACCTGAAGAGCTGGTTGT	0.318000													4	28					0	0	0.00024832	0	0
FPGT	8790	broad.mit.edu	37	1	74670196	74670196	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:74670196C>T	uc001dgb.1	+	4	502	c.465C>T	c.(463-465)CCC>CCT	p.P155P	TNNI3K_uc001dgc.1_Intron|TNNI3K_uc001dgd.2_Intron|TNNI3K_uc001dge.1_Intron|FPGT_uc010oqt.1_Intron|FPGT_uc010oqu.1_Intron|FPGT_uc010oqv.1_Intron	NM_003838	NP_003829	O14772	FPGT_HUMAN	fucose-1-phosphate guanyltransferase	155					fucose metabolic process	cytoplasm	fucose-1-phosphate guanylyltransferase activity|GTP binding			skin(1)	1						TTGATTTCCCCTTAAATATGA	0.353000													22	95					0	0	0.000229342	0	0
NTNG1	22854	broad.mit.edu	37	1	107867110	107867110	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:107867110C>T	uc001dvh.3	+	3	1171	c.453C>T	c.(451-453)ACC>ACT	p.T151T	NTNG1_uc001dvf.3_Silent_p.T151T|NTNG1_uc010out.1_Silent_p.T151T|NTNG1_uc001dvc.3_Silent_p.T151T|NTNG1_uc001dvd.1_Silent_p.T151T	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	151	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		TAGTTATTACCTTTGAATCTG	0.468000													13	63					0	0	0.000151284	0	0
AMPD1	270	broad.mit.edu	37	1	115231288	115231288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:115231288C>T	uc001efe.1	-	3	193	c.109G>A	c.(109-111)GAG>AAG	p.E37K	AMPD1_uc001eff.1_Missense_Mutation_p.E33K	NM_000036	NP_000027	P23109	AMPD1_HUMAN	adenosine monophosphate deaminase 1 (isoform M)	37					purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			ovary(2)|large_intestine(1)|skin(1)	4	all_epithelial(7;7.83e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)	Adenosine monophosphate(DB00131)	GGGGAAATCTCCTGACGACCT	0.433000													24	76					0	0	0.00047179	0	0
RPTN	126638	broad.mit.edu	37	1	152127939	152127940	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:152127939_152127940GG>TT	uc001ezs.1	-	3	1700_1701	c.1635_1636CC>AA	c.(1633-1638)TCCCAC>TCAAAC	p.H546N		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	546	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						TGACCATAGTGGGAACTCTGGC	0.525000													16	531					0	0	6.4e-05	0	0
KPRP	448834	broad.mit.edu	37	1	152733030	152733030	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:152733030C>T	uc001fal.1	+	2	1024	c.966C>T	c.(964-966)GGC>GGT	p.G322G		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	322	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGAGACGTGGCCCCAAGTGCC	0.597000													5	33					0	0	0.000602214	0	0
RIT1	6016	broad.mit.edu	37	1	155874167	155874167	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:155874167G>A	uc001fmh.1	-	5	551	c.364C>T	c.(364-366)CGA>TGA	p.R122*	RIT1_uc010pgr.1_Nonsense_Mutation_p.R86*	NM_006912	NP_008843	Q92963	RIT1_HUMAN	Ras-like without CAAX 1	122					nerve growth factor receptor signaling pathway|small GTPase mediated signal transduction	intracellular|plasma membrane	calmodulin binding|GTP binding|GTPase activity			breast(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;1.79e-05)			TCAGTACGTCGGACTCGATAA	0.418000													8	60					0	0	0.000274275	0	0
OR6N2	81442	broad.mit.edu	37	1	158746811	158746811	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:158746811G>A	uc010pir.1	-	1	615	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_001005278	NP_001005278	Q8NGY6	OR6N2_HUMAN	olfactory receptor, family 6, subfamily N,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(112;0.0378)					TAAGAATTATGAAAGCATTAA	0.393000													8	35					0	0	0.000157383	0	0
PYHIN1	149628	broad.mit.edu	37	1	158906920	158906920	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:158906920A>G	uc001ftb.2	+	2	465	c.220A>G	c.(220-222)ACA>GCA	p.T74A	PYHIN1_uc001fta.3_Missense_Mutation_p.T74A|PYHIN1_uc001ftc.2_Missense_Mutation_p.T74A|PYHIN1_uc001ftd.2_Missense_Mutation_p.T74A|PYHIN1_uc001fte.2_Missense_Mutation_p.T74A	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	74	DAPIN.				cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					AGAAATACCAACACTGGGAGA	0.433000													8	44					0	0	0.000274275	0	0
CD84	8832	broad.mit.edu	37	1	160523806	160523806	+	Silent	SNP	T	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:160523806T>C	uc001fwh.3	-	3	543	c.519A>G	c.(517-519)GAA>GAG	p.E173E	CD84_uc001fwf.3_Silent_p.E173E|CD84_uc001fwg.3_Silent_p.E173E|CD84_uc009wtn.2_Silent_p.E173E|CD84_uc001fwi.3_Silent_p.E59E|CD84_uc001fwj.2_Silent_p.E173E|CD84_uc001fwk.2_Silent_p.E173E	NM_003874	NP_003865	Q9UIB8	SLAF5_HUMAN	CD84 molecule	173	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|defense response|homophilic cell adhesion|leukocyte migration	integral to plasma membrane	receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(52;3.62e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.0175)			CATTACCCTCTTCTCCCAGGG	0.458000													13	75					0	0	0.000566183	0	0
ILDR2	387597	broad.mit.edu	37	1	166926005	166926005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:166926005C>T	uc001gdx.1	-	3	520	c.464G>A	c.(463-465)GGG>GAG	p.G155E		NM_199351	NP_955383	Q71H61	ILDR2_HUMAN	immunoglobulin-like domain containing receptor	155	Ig-like V-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1						CTCATTTTTCCCCTCCAGGTC	0.443000													14	70					0	0	0.000151284	0	0
ASTN1	460	broad.mit.edu	37	1	177001730	177001730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:177001730C>T	uc001glc.2	-	3	939	c.727G>A	c.(727-729)GAG>AAG	p.E243K	ASTN1_uc001glb.1_Missense_Mutation_p.E243K|ASTN1_uc001gld.1_Missense_Mutation_p.E243K|ASTN1_uc009wwx.1_Missense_Mutation_p.E243K|ASTN1_uc001gle.3_RNA	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	243					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ATGTCATACTCATAGCCGTCC	0.642000													14	58					0	0	0.000308642	0	0
FAM5C	339479	broad.mit.edu	37	1	190067226	190067226	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:190067226C>T	uc001gse.1	-	8	2455	c.2223G>A	c.(2221-2223)AGG>AGA	p.R741R	FAM5C_uc010pot.1_Silent_p.R639R	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	741						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					CAGATTGGATCCTCACCACCT	0.443000													22	88					0	0	0.000175454	0	0
PTPRC	5788	broad.mit.edu	37	1	198685931	198685931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:198685931G>A	uc001gur.1	+	13	1586	c.1406G>A	c.(1405-1407)GGA>GAA	p.G469E	PTPRC_uc001gus.1_Missense_Mutation_p.G421E|PTPRC_uc001gut.1_Missense_Mutation_p.G308E|PTPRC_uc009wzf.1_Missense_Mutation_p.G357E|PTPRC_uc010ppg.1_Missense_Mutation_p.G405E	NM_002838	NP_002829	P08575	PTPRC_HUMAN	protein tyrosine phosphatase, receptor type, C	469	Extracellular (Potential).|Fibronectin type-III 1.				axon guidance|B cell proliferation|B cell receptor signaling pathway|defense response to virus|immunoglobulin biosynthetic process|negative regulation of cytokine-mediated signaling pathway|negative regulation of protein kinase activity|negative regulation of T cell mediated cytotoxicity|positive regulation of antigen receptor-mediated signaling pathway|positive regulation of B cell proliferation|positive regulation of protein kinase activity|positive regulation of T cell proliferation|regulation of S phase|release of sequestered calcium ion into cytosol|T cell differentiation|T cell receptor signaling pathway	focal adhesion|integral to plasma membrane|membrane raft	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			breast(4)|skin(3)|ovary(2)|lung(1)|kidney(1)|pancreas(1)	12						CAACGTAATGGAAGTGCTGCA	0.299000													11	59					0	0	0.000151284	0	0
CACNA1S	779	broad.mit.edu	37	1	201061190	201061190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:201061190G>A	uc001gvv.2	-	4	678	c.451C>T	c.(451-453)CCA>TCA	p.P151S		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	151	Extracellular (Potential).|I.				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CTGCTCATTGGGGCTGTGTGG	0.592000													9	45					0	0	0.000978159	0	0
MYBPH	4608	broad.mit.edu	37	1	203143595	203143595	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:203143595G>A	uc001gzh.1	-	3	530	c.471C>T	c.(469-471)GCC>GCT	p.A157A	FMOD_uc010pqi.1_Intron	NM_004997	NP_004988	Q13203	MYBPH_HUMAN	myosin binding protein H	157	Fibronectin type-III 1.				cell adhesion|regulation of striated muscle contraction	myosin filament	structural constituent of muscle				0			BRCA - Breast invasive adenocarcinoma(75;0.153)	Colorectal(1306;0.0306)		GGTCCAGCATGGCCGGCGGGC	0.587000													6	43					0	0	0.000274275	0	0
CTSE	1510	broad.mit.edu	37	1	206327476	206327476	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:206327476A>G	uc001hdu.2	+	6	783	c.665A>G	c.(664-666)AAC>AGC	p.N222S	CTSE_uc001hdv.2_Missense_Mutation_p.N222S|CTSE_uc010prs.1_Missense_Mutation_p.N147S	NM_001910	NP_001901	P14091	CATE_HUMAN	cathepsin E isoform a preproprotein	227					antigen processing and presentation of exogenous peptide antigen via MHC class II|digestion|proteolysis	endosome	aspartic-type endopeptidase activity			ovary(1)	1			BRCA - Breast invasive adenocarcinoma(75;0.0754)			CCATGTAGTAACCCAGAAGGT	0.537000													24	127					0	0	0.000878237	0	0
CR1	1378	broad.mit.edu	37	1	207680083	207680083	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:207680083A>T	uc001hfy.2	+	3	466	c.326A>T	c.(325-327)GAT>GTT	p.D109V	CR1_uc009xcl.1_Missense_Mutation_p.D109V|CR1_uc001hfx.2_Missense_Mutation_p.D109V|CR1_uc010psg.1_Missense_Mutation_p.D109V|CR1_uc009xcj.1_Missense_Mutation_p.D109V|CR1_uc009xck.1_Missense_Mutation_p.D109V	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	109	Extracellular (Potential).|Sushi 2.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						AATCCTCCAGATCCTGTGAAT	0.388000													9	65					0	0	0.000673444	0	0
CR1	1378	broad.mit.edu	37	1	207680085	207680085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:207680085C>T	uc001hfy.2	+	3	468	c.328C>T	c.(328-330)CCT>TCT	p.P110S	CR1_uc009xcl.1_Missense_Mutation_p.P110S|CR1_uc001hfx.2_Missense_Mutation_p.P110S|CR1_uc010psg.1_Missense_Mutation_p.P110S|CR1_uc009xcj.1_Missense_Mutation_p.P110S|CR1_uc009xck.1_Missense_Mutation_p.P110S	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	110	Extracellular (Potential).|Sushi 2.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TCCTCCAGATCCTGTGAATGG	0.383000													10	66					0	0	0.000978159	0	0
HHIPL2	79802	broad.mit.edu	37	1	222713642	222713642	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:222713642C>G	uc001hnh.1	-	4	1218	c.1160G>C	c.(1159-1161)AGG>ACG	p.R387T		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	387					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		TGAGCCTGCCCTGTTCACATC	0.527000													4	237					0	0	0.00024832	0	0
DISP1	84976	broad.mit.edu	37	1	223176933	223176934	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:223176933_223176934GG>TT	uc001hnu.1	+	8	2341_2342	c.2194_2195GG>TT	c.(2194-2196)GGG>TTG	p.G732L		NM_032890	NP_116279	Q96F81	DISP1_HUMAN	dispatched A	732	Helical; (Potential).				diaphragm development|protein homotrimerization|regulation of protein secretion|smoothened signaling pathway	basolateral plasma membrane|integral to membrane	hedgehog receptor activity|peptide transporter activity				0				GBM - Glioblastoma multiforme(131;0.102)		AACTGTAGGTGGGGCCTACATT	0.426000													14	692					0	0	6.4e-05	0	0
AGT	183	broad.mit.edu	37	1	230839065	230839065	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:230839065C>T	uc001hty.3	-	5	1788	c.1280G>A	c.(1279-1281)AGC>AAC	p.S427N	AGT_uc009xfe.2_3'UTR|AGT_uc009xff.2_Missense_Mutation_p.S399N	NM_000029	NP_000020	P01019	ANGT_HUMAN	angiotensinogen preproprotein	427					activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|blood vessel remodeling|cell-cell signaling|cellular lipid metabolic process|G-protein signaling, coupled to cGMP nucleotide second messenger|kidney development|low-density lipoprotein particle remodeling|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of activation of JAK2 kinase activity|positive regulation of apoptosis|positive regulation of branching involved in ureteric bud morphogenesis|positive regulation of cardiac muscle hypertrophy|positive regulation of cholesterol esterification|positive regulation of cytokine production|positive regulation of endothelial cell migration|positive regulation of epidermal growth factor receptor signaling pathway|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of NAD(P)H oxidase activity|positive regulation of NF-kappaB transcription factor activity|positive regulation of phosphatidylinositol 3-kinase cascade|positive regulation of protein tyrosine kinase activity|positive regulation of reactive oxygen species metabolic process|positive regulation of transcription, DNA-dependent|regulation of proteolysis|regulation of renal output by angiotensin|regulation of renal sodium excretion|regulation of vasoconstriction|renin-angiotensin regulation of aldosterone production|response to muscle activity involved in regulation of muscle adaptation	extracellular space|soluble fraction	acetyltransferase activator activity|growth factor activity|hormone activity|serine-type endopeptidase inhibitor activity|type 1 angiotensin receptor binding|type 2 angiotensin receptor binding				0	Breast(184;0.0735)|Ovarian(103;0.183)	all_cancers(173;4.64e-23)|all_epithelial(177;3.61e-18)|Breast(1374;0.00093)|all_neural(198;0.0604)|Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;4.4e-06)|Colorectal(1306;5.46e-06)|COAD - Colon adenocarcinoma(196;0.000256)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)	Aliskiren(DB01258)|Atorvastatin(DB01076)|Cilazapril(DB01340)|Irbesartan(DB01029)|Lisinopril(DB00722)|Ouabain(DB01092)|Simvastatin(DB00641)	AAAAAAAATGCTGTTCAGCAC	0.572000													8	39					0	0	0.000442599	0	0
SIPA1L2	57568	broad.mit.edu	37	1	232650696	232650696	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:232650696G>A	uc001hvg.2	-	1	548	c.390C>T	c.(388-390)CTC>CTT	p.L130L		NM_020808	NP_065859	Q9P2F8	SI1L2_HUMAN	signal-induced proliferation-associated 1 like	130					regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)|skin(1)	6		all_cancers(173;0.00605)|Prostate(94;0.128)|all_epithelial(177;0.186)				AGTCCAGATCGAGCTGTTCAT	0.507000													19	116					0	0	0.000132079	0	0
RYR2	6262	broad.mit.edu	37	1	237947421	237947421	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:237947421G>A	uc001hyl.1	+	90	12529	c.12409G>A	c.(12409-12411)GAA>AAA	p.E4137K	RYR2_uc010pya.1_Missense_Mutation_p.E552K	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	4137					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGGCCGCATCGAAATCATGGG	0.512000													10	52					0	0	0.000673444	0	0
OR2M4	26245	broad.mit.edu	37	1	248403001	248403001	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:248403001C>T	uc010pzh.1	+	1	771	c.771C>T	c.(769-771)TTC>TTT	p.F257F		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	257	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			CTGCTATGTTCATGTACATGA	0.522000													10	46					0	0	0.000151284	0	0
OR2T2	401992	broad.mit.edu	37	1	248616437	248616437	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:248616437C>T	uc001iek.1	+	1	339	c.339C>T	c.(337-339)TTC>TTT	p.F113F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	113	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GAGGGGAATTCTTCCTGCTGG	0.542000													11	133					0	0	0.000151284	0	0
OR2G6	391211	broad.mit.edu	37	1	248685402	248685402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:248685402G>A	uc001ien.1	+	1	455	c.455G>A	c.(454-456)GGC>GAC	p.G152D		NM_001013355	NP_001013373	Q5TZ20	OR2G6_HUMAN	olfactory receptor, family 2, subfamily G,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0156)	OV - Ovarian serous cystadenocarcinoma(106;0.0265)			TGGCTCAGCGGCCTCATCACC	0.577000													7	41					0	0	8.12818e-05	0	0
UPF2	26019	broad.mit.edu	37	10	12001213	12001214	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:12001213_12001214CG>AT	uc001ila.2	-	11	2800_2801	c.2326_2327CG>AT	c.(2326-2328)CGG>ATG	p.R776M	UPF2_uc001ilb.2_Missense_Mutation_p.R776M|UPF2_uc001ilc.2_Missense_Mutation_p.R776M|UPF2_uc009xiz.1_Missense_Mutation_p.R776M	NM_080599	NP_542166	Q9HAU5	RENT2_HUMAN	UPF2 regulator of nonsense transcripts homolog	776	Sufficient for interaction with UPF3A and UPF3B.|MIF4G 3.|Sufficient for interaction with EIF4A1 and EIF1.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	exon-exon junction complex|perinuclear region of cytoplasm	identical protein binding|RNA binding			central_nervous_system(2)|ovary(1)	3		Renal(717;0.228)				CAAAAGTTTCCGGACATATTCC	0.406000													12	616					0	0	6.4e-05	0	0
ARMC3	219681	broad.mit.edu	37	10	23326322	23326322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:23326322G>A	uc001irm.3	+	19	2616	c.2533G>A	c.(2533-2535)GAG>AAG	p.E845K	ARMC3_uc010qcv.1_Missense_Mutation_p.E838K|ARMC3_uc010qcw.1_Missense_Mutation_p.E582K	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	845							binding				0						CCCCGCTCCTGAGATGTACGT	0.512000													15	48					0	0	0.000422831	0	0
ARMC4	55130	broad.mit.edu	37	10	28225697	28225697	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:28225697C>T	uc009xky.2	-	15	2308	c.2210G>A	c.(2209-2211)GGG>GAG	p.G737E	ARMC4_uc010qds.1_Missense_Mutation_p.G262E|ARMC4_uc010qdt.1_Missense_Mutation_p.G429E|ARMC4_uc001itz.2_Missense_Mutation_p.G737E	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	737							binding			ovary(4)|skin(2)	6						CCATATAGCCCCTGTGACAGC	0.458000													23	103					0	0	0.000375601	0	0
RET	5979	broad.mit.edu	37	10	43622166	43622166	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:43622166C>T	uc001jal.2	+	19	3373	c.3183C>T	c.(3181-3183)CTC>CTT	p.L1061L	RET_uc001jak.1_Silent_p.L1061L|RET_uc010qez.1_Silent_p.L807L	NM_020975	NP_066124	P07949	RET_HUMAN	ret proto-oncogene isoform a	1061	Cytoplasmic (Potential).		L -> P (in HSCR1).		homophilic cell adhesion|positive regulation of metanephric glomerulus development|positive regulation of transcription, DNA-dependent|posterior midgut development	integral to membrane	ATP binding|calcium ion binding|transmembrane receptor protein tyrosine kinase activity			thyroid(404)|adrenal_gland(20)|lung(9)|large_intestine(5)|breast(4)|ovary(4)|central_nervous_system(3)|urinary_tract(1)|NS(1)	451		Ovarian(717;0.0423)			Sunitinib(DB01268)	AAAACAAACTCTATGGTAGAA	0.478000		1	T|Mis|N|F	H4|PRKAR1A|NCOA4|PCM1|GOLGA5|TRIM33|KTN1|TRIM27|HOOK3	medullary thyroid| papillary thyroid|pheochromocytoma	medullary thyroid| papillary thyroid|pheochromocytoma	Hirschsprung disease		Multiple_Endocrine_Neoplasia_type_2B|Multiple_Endocrine_Neoplasia_type_2A|Familial_Medullary_Thyroid_Carcinoma				4	12					0	0	0.00024832	0	0
Unknown	0	broad.mit.edu	37	10	51818942	51818942	+	RNA	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:51818942G>A	uc001jiz.1	-	3		c.1489C>T								Homo sapiens cDNA FLJ31813 fis, clone NT2RI2009517.																		AGGCCAGTGGGAGGGGGAAGG	0.478000													5	14					0	0	0.000602214	0	0
ANK3	288	broad.mit.edu	37	10	61830991	61830991	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:61830991G>A	uc001jky.2	-	37	9840	c.9648C>T	c.(9646-9648)ACC>ACT	p.T3216T	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	3216					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCTTAAGGGAGGTTGACTTGG	0.483000													27	102					0	0	0.00106085	0	0
KCNMA1	3778	broad.mit.edu	37	10	78674772	78674772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:78674772C>T	uc001jxn.2	-	24	3115	c.2938G>A	c.(2938-2940)GAT>AAT	p.D980N	KCNMA1_uc001jxj.2_Missense_Mutation_p.D926N|KCNMA1_uc001jxk.1_Missense_Mutation_p.D598N|KCNMA1_uc009xrt.1_Missense_Mutation_p.D771N|KCNMA1_uc001jxl.1_Missense_Mutation_p.D605N|KCNMA1_uc001jxo.2_Missense_Mutation_p.D963N|KCNMA1_uc001jxm.2_Missense_Mutation_p.D922N|KCNMA1_uc001jxq.2_Missense_Mutation_p.D925N	NM_001161352	NP_001154824	Q12791	KCMA1_HUMAN	large conductance calcium-activated potassium	980	Cytoplasmic (Potential).				cellular potassium ion homeostasis|negative regulation of cell volume|platelet activation|positive regulation of apoptosis|regulation of membrane potential|response to calcium ion|response to carbon monoxide|response to hypoxia|response to osmotic stress|smooth muscle contraction involved in micturition	apical plasma membrane|caveola|integral to membrane|voltage-gated potassium channel complex	actin binding|calcium-activated potassium channel activity|large conductance calcium-activated potassium channel activity|metal ion binding|voltage-gated potassium channel activity			pancreas(2)|ovary(1)	3	all_cancers(46;0.203)|all_epithelial(25;0.00604)|Prostate(51;0.0198)		OV - Ovarian serous cystadenocarcinoma(4;0.0586)|Epithelial(14;0.081)|all cancers(16;0.183)		Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Chlorzoxazone(DB00356)|Cromoglicate(DB01003)|Cyclothiazide(DB00606)|Diazoxide(DB01119)|Enflurane(DB00228)|Hydrochlorothiazide(DB00999)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Quinethazone(DB01325)|Trichlormethiazide(DB01021)	GGGCTGTTATCTGGAGAGGAT	0.463000													20	101					0	0	0.000175454	0	0
BTAF1	9044	broad.mit.edu	37	10	93753466	93753466	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:93753466C>T	uc001khr.2	+	22	3159	c.3061C>T	c.(3061-3063)CTG>TTG	p.L1021L	BTAF1_uc001kht.1_Silent_p.L459L	NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1021					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GAAGCCTTACCTGGTACAACG	0.338000													6	33					0	0	0.000274275	0	0
C10orf119	79892	broad.mit.edu	37	10	121596422	121596422	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:121596422T>C	uc001ler.2	-	13	1832	c.1534A>G	c.(1534-1536)AGG>GGG	p.R512G	C10orf119_uc001leq.1_Missense_Mutation_p.R337G|C10orf119_uc001les.1_Missense_Mutation_p.R337G	NM_024834	NP_079110	Q9BTE3	MCMBP_HUMAN	chromosome 10 open reading frame 119	512					cell division|DNA-dependent DNA replication|mitosis|S phase of mitotic cell cycle|sister chromatid cohesion	nucleus	chromatin binding				0		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.0044)		AGGAGTGACCTCCCCTCCGAA	0.423000													3	66					0	0	0.000602214	0	0
DMBT1	1755	broad.mit.edu	37	10	124339202	124339202	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:124339202G>T	uc001lgk.1	+	10	894	c.788G>T	c.(787-789)TGG>TTG	p.W263L	DMBT1_uc001lgl.1_Missense_Mutation_p.W263L|DMBT1_uc001lgm.1_Missense_Mutation_p.W263L|DMBT1_uc009xzz.1_Missense_Mutation_p.W263L|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yaa.1_Missense_Mutation_p.W115L	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	263	SRCR 2.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GATGACTACTGGGACACCAAT	0.612000													12	220					0.000308642	0.00454192	0.000308642	1	0
FANK1	92565	broad.mit.edu	37	10	127677120	127677121	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:127677120_127677121GG>AA	uc001ljh.3	+	3	296_297	c.192_193GG>AA	c.(190-195)ACGGGA>ACAAGA	p.G65R	FANK1_uc010quk.1_Missense_Mutation_p.G59R|FANK1_uc009yan.2_Missense_Mutation_p.G65R|FANK1_uc001lji.2_Missense_Mutation_p.G59R	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	65	Fibronectin type-III.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				TCCTGTCTAGGGGATATGCAAC	0.495000													29	118					0	0	6.4e-05	0	0
TSSC4	10078	broad.mit.edu	37	11	2423876	2423877	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:2423876_2423877GG>AA	uc001lwj.2	+	4	374_375	c.13_14GG>AA	c.(13-15)GGA>AAA	p.G5K	TSSC4_uc001lwi.2_Missense_Mutation_p.G5K|TSSC4_uc001lwk.2_Missense_Mutation_p.G5K|TSSC4_uc001lwl.2_Missense_Mutation_p.G5K	NM_005706	NP_005697	Q9Y5U2	TSSC4_HUMAN	tumor suppressing subtransferable candidate 4	5											0		all_epithelial(84;0.000161)|Breast(177;0.000962)|Medulloblastoma(188;0.00106)|Ovarian(85;0.0014)|all_neural(188;0.0137)|Lung NSC(207;0.209)		BRCA - Breast invasive adenocarcinoma(625;0.00145)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGCTGAGGCAGGAACAGGTGAG	0.579000													18	115					0	0	6.4e-05	0	0
PGAP2	27315	broad.mit.edu	37	11	3845143	3845143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:3845143G>A	uc001lys.2	+	4	505	c.379G>A	c.(379-381)GCC>ACC	p.A127T	PGAP2_uc001lyl.2_Missense_Mutation_p.A84T|PGAP2_uc010qxw.1_Missense_Mutation_p.A184T|PGAP2_uc010qxx.1_Missense_Mutation_p.S107N|PGAP2_uc001lyp.3_Intron|PGAP2_uc010qxy.1_Missense_Mutation_p.A123T|PGAP2_uc010qxz.1_Missense_Mutation_p.A123T|PGAP2_uc001lyn.3_Missense_Mutation_p.S19N|PGAP2_uc010qya.1_RNA|PGAP2_uc001lyr.2_Missense_Mutation_p.A66T|PGAP2_uc010qyb.1_Missense_Mutation_p.S69N|PGAP2_uc001lyt.2_5'UTR	NM_014489	NP_055304	Q9UHJ9	PGAP2_HUMAN	FGF receptor activating protein 1 isoform 1	127					GPI anchor biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	protein transporter activity				0						GGTGAGCTCAGCCATCGGCGG	0.627000													15	67					0	0	0.000422831	0	0
OR52A1	23538	broad.mit.edu	37	11	5172910	5172910	+	Silent	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:5172910A>T	uc010qyy.1	-	1	690	c.690T>A	c.(688-690)CGT>CGA	p.R230R		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTGGGGCAAACGAAAAACTG	0.423000													10	51					0	0	0.000978159	0	0
ZNF214	7761	broad.mit.edu	37	11	7022610	7022611	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:7022610_7022611GG>TT	uc001mfa.2	-	3	606_607	c.303_304CC>AA	c.(301-306)TCCCAG>TCAAAG	p.Q102K	ZNF214_uc010ray.1_Missense_Mutation_p.Q102K|ZNF214_uc009yfh.1_Missense_Mutation_p.Q102K	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	102					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TCCTGACACTGGGAACGATCTT	0.431000													11	472					0	0	6.4e-05	0	0
OR5P2	120065	broad.mit.edu	37	11	7817774	7817774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:7817774G>A	uc001mfp.1	-	1	716	c.716C>T	c.(715-717)TCC>TTC	p.S239F		NM_153444	NP_703145	Q8WZ92	OR5P2_HUMAN	olfactory receptor, family 5, subfamily P,	239	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		AGTGAGGTGGGAAGTGCAGGT	0.498000													15	85					0	0	0.000566183	0	0
MICAL2	9645	broad.mit.edu	37	11	12247799	12247799	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:12247799C>T	uc001mjz.2	+	14	2058	c.1770C>T	c.(1768-1770)ATC>ATT	p.I590I	MICAL2_uc010rch.1_Silent_p.I590I|MICAL2_uc001mka.2_Silent_p.I590I|MICAL2_uc010rci.1_Silent_p.I590I|MICAL2_uc001mkb.2_Silent_p.I590I|MICAL2_uc001mkc.2_Silent_p.I590I|MICAL2_uc001mkd.2_Silent_p.I419I|MICAL2_uc010rcj.1_5'UTR	NM_014632	NP_055447	O94851	MICA2_HUMAN	microtubule associated monoxygenase, calponin	590	CH.					cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding			upper_aerodigestive_tract(2)	2				Epithelial(150;0.00552)		AGTTTGGGATCCCTCCAGTGA	0.512000													22	126					0	0	0.000175454	0	0
NELL1	4745	broad.mit.edu	37	11	20699480	20699480	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:20699480G>A	uc001mqe.2	+	2	211	c.58G>A	c.(58-60)GTG>ATG	p.V20M	NELL1_uc001mqf.2_Missense_Mutation_p.V20M|NELL1_uc009yid.2_Missense_Mutation_p.V48M|NELL1_uc010rdo.1_Missense_Mutation_p.V20M|NELL1_uc010rdp.1_Translation_Start_Site	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	20					cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						CTTTCCAGTGGTGGGCTTTGG	0.502000													10	59					0	0	0.000978159	0	0
QSER1	79832	broad.mit.edu	37	11	32954688	32954688	+	Silent	SNP	C	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:32954688C>A	uc001mty.2	+	4	1764	c.1497C>A	c.(1495-1497)TCC>TCA	p.S499S	QSER1_uc001mtz.1_Silent_p.S260S|QSER1_uc001mua.2_Silent_p.S4S	NM_001076786	NP_001070254	Q2KHR3	QSER1_HUMAN	glutamine and serine rich 1	499	Ser-rich.									ovary(3)|central_nervous_system(2)|skin(1)	6	Breast(20;0.158)					TGCATTCTTCCCAAAATGTTC	0.438000													16	62					2.32078e-09	3.47554e-08	0.000308642	1	0
OR4X2	119764	broad.mit.edu	37	11	48267210	48267210	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:48267210C>T	uc001ngs.1	+	1	555	c.555C>T	c.(553-555)TTC>TTT	p.F185F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	185	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGACACCTTCCTCATTGGTC	0.483000													36	181					0	0	0.000953801	0	0
OR4C3	256144	broad.mit.edu	37	11	48347292	48347292	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:48347292C>T	uc010rhv.1	+	1	800	c.800C>T	c.(799-801)GCC>GTC	p.A267V		NM_001004702	NP_001004702	Q8NH37	OR4C3_HUMAN	olfactory receptor, family 4, subfamily C,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						ACCTGTGGAGCCCACTTCATT	0.433000													20	94					0	0	0.000958276	0	0
OR4A5	81318	broad.mit.edu	37	11	51412241	51412241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:51412241G>A	uc001nhi.1	-	1	155	c.155C>T	c.(154-156)TCC>TTC	p.S52F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	52	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				GGAACCCAAGGAAGGGCTGGC	0.428000													12	44					0	0	0.00010058	0	0
OR4C46	119749	broad.mit.edu	37	11	51515533	51515533	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:51515533C>T	uc010ric.1	+	1	252	c.252C>T	c.(250-252)CTC>CTT	p.L84L		NM_001004703	NP_001004703	A6NHA9	O4C46_HUMAN	olfactory receptor, family 4, subfamily C,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						CACATTCACTCTATGGAAAGA	0.478000													18	123					0	0	0.000958276	0	0
Unknown	0	broad.mit.edu	37	11	55065680	55065680	+	RNA	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:55065680G>A	uc001nhl.1	-	1		c.29C>T								Homo sapiens mRNA for hypothetical protein, partial sequence, clone:Hsa11-digit20-11-30-F.																		CTGGGTCTAGGAAGTAGTTCA	0.478000													7	47					0	0	0.000274275	0	0
OR4A15	81328	broad.mit.edu	37	11	55135551	55135551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:55135551G>A	uc010rif.1	+	1	192	c.192G>A	c.(190-192)ATG>ATA	p.M64I		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	64	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						TAATCTACATGGTGACGATAA	0.418000													12	58					0	0	0.00010058	0	0
OR4C6	219432	broad.mit.edu	37	11	55433174	55433174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:55433174G>A	uc001nht.3	+	3	797	c.532G>A	c.(532-534)GAT>AAT	p.D178N	OR4C6_uc010rik.1_Missense_Mutation_p.D178N	NM_001004704	NP_001004704	Q8NH72	OR4C6_HUMAN	olfactory receptor, family 4, subfamily C,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						CTTTATATGTGATTTGTTTCA	0.448000													13	75					0	0	0.000151284	0	0
OR5F1	338674	broad.mit.edu	37	11	55761571	55761571	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:55761571G>A	uc010riv.1	-	1	531	c.531C>T	c.(529-531)TTC>TTT	p.F177F		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	177	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					TGTCACAGAAGAAGTGATGGA	0.473000													13	97					0	0	0.000308642	0	0
OR8I2	120586	broad.mit.edu	37	11	55860825	55860825	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:55860825C>T	uc010rix.1	+	1	42	c.42C>T	c.(40-42)CTC>CTT	p.L14L		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	14	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					TCTTCATCCTCTCTGGATTTG	0.398000													23	136					0	0	0.000586117	0	0
OR5M10	390167	broad.mit.edu	37	11	56345140	56345140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:56345140C>T	uc001niz.1	-	1	58	c.58G>A	c.(58-60)GAC>AAC	p.D20N		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	20	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCACTGGGTCGTCTGTCAGT	0.458000													11	82					0	0	0.000978159	0	0
OR10Q1	219960	broad.mit.edu	37	11	57995811	57995811	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:57995811G>A	uc010rkd.1	-	1	537	c.537C>T	c.(535-537)ATC>ATT	p.I179I		NM_001004471	NP_001004471	Q8NGQ4	O10Q1_HUMAN	olfactory receptor, family 10, subfamily Q,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(21;0.0589)				GGAAGTGGTTGATTTCCTGGT	0.642000													5	30					0	0	3.59834e-05	0	0
OR5B12	390191	broad.mit.edu	37	11	58207172	58207172	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:58207172G>A	uc010rkh.1	-	1	453	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	151	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				ATGCATTCAGGAAACCACAGA	0.463000													14	96					0	0	0.000219431	0	0
OR4D6	219983	broad.mit.edu	37	11	59225122	59225122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:59225122G>A	uc010rku.1	+	1	689	c.689G>A	c.(688-690)GGG>GAG	p.G230E		NM_001004708	NP_001004708	Q8NGJ1	OR4D6_HUMAN	olfactory receptor, family 4, subfamily D,	230	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TCCCACTCTGGGGAGGGGCGG	0.562000													8	52					0	0	0.000157383	0	0
MS4A2	2206	broad.mit.edu	37	11	59857832	59857832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:59857832G>A	uc001nop.2	+	3	312	c.210G>A	c.(208-210)ATG>ATA	p.M70I	MS4A2_uc009ymu.2_Missense_Mutation_p.M70I	NM_000139	NP_000130	Q01362	FCERB_HUMAN	membrane-spanning 4-domains, subfamily A, member	70	Helical; (Potential).				cell proliferation|humoral immune response	integral to plasma membrane	calcium channel activity			ovary(1)	1		all_epithelial(135;0.245)			Omalizumab(DB00043)	TGACTGCTATGATATGCCTTT	0.323000													24	203					0	0	0.000184323	0	0
FADS2	9415	broad.mit.edu	37	11	61630767	61630767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:61630767C>T	uc001nsl.1	+	9	1144	c.994C>T	c.(994-996)CAC>TAC	p.H332Y	FADS2_uc001nsj.2_Missense_Mutation_p.H310Y|FADS2_uc010rlo.1_Missense_Mutation_p.H301Y|FADS2_uc001nsk.2_Missense_Mutation_p.H332Y	NM_004265	NP_004256	O95864	FADS2_HUMAN	fatty acid desaturase 2	332	Cytoplasmic (Potential).				electron transport chain|transport|unsaturated fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction	heme binding			ovary(1)|pancreas(1)	2					Alpha-Linolenic Acid(DB00132)	CCTGGAGAGCCACTGGTTTGT	0.597000													9	56					0	0	0.000673444	0	0
ANO1	55107	broad.mit.edu	37	11	69933904	69933904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:69933904G>A	uc001opj.2	+	2	460	c.155G>A	c.(154-156)GGC>GAC	p.G52D	ANO1_uc001opk.1_Missense_Mutation_p.G24D|ANO1_uc001opl.1_RNA	NM_018043	NP_060513	Q5XXA6	ANO1_HUMAN	anoctamin 1, calcium activated chloride channel	52	Cytoplasmic (Potential).				multicellular organismal development	chloride channel complex|cytoplasm|plasma membrane	intracellular calcium activated chloride channel activity			ovary(1)|pancreas(1)	2						TGCAAGTATGGCCTGTACTTC	0.587000													5	20					0	0	0.000157383	0	0
SHANK2	22941	broad.mit.edu	37	11	70331609	70331609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:70331609G>A	uc001oqc.2	-	21	4867	c.4789C>T	c.(4789-4791)CTC>TTC	p.L1597F	SHANK2_uc010rqn.1_Missense_Mutation_p.L1009F|SHANK2_uc001opz.2_Missense_Mutation_p.L1002F|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	1218					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CTTGGCTGGAGAACCTTGGCC	0.423000													12	80					0	0	0.000978159	0	0
CLPB	81570	broad.mit.edu	37	11	72005417	72005418	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:72005417_72005418CG>AT	uc001osj.2	-	15	1771_1772	c.1721_1722CG>AT	c.(1720-1722)TCG>TAT	p.S574Y	CLPB_uc010rqx.1_Missense_Mutation_p.S529Y|CLPB_uc010rqy.1_Missense_Mutation_p.S515Y|CLPB_uc001osk.2_Missense_Mutation_p.S544Y|CLPB_uc009ytg.2_RNA|CLPB_uc010rqz.1_Missense_Mutation_p.S373Y|CLPB_uc001osi.2_Missense_Mutation_p.S182Y	NM_030813	NP_110440	Q9H078	CLPB_HUMAN	caseinolytic peptidase B	574					cellular response to heat		ATP binding|nucleoside-triphosphatase activity|protein binding			pancreas(1)	1						GGATGAGCTCCGAGTGGCAGAA	0.564000													7	261					0	0	6.4e-05	0	0
GAB2	9846	broad.mit.edu	37	11	77931468	77931468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:77931468G>A	uc001ozh.2	-	9	1784	c.1784C>T	c.(1783-1785)CCC>CTC	p.P595L	GAB2_uc001ozg.2_Missense_Mutation_p.P557L	NM_080491	NP_536739	Q9UQC2	GAB2_HUMAN	GRB2-associated binding protein 2 isoform a	595					osteoclast differentiation|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mast cell degranulation	cytosol|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|transmembrane receptor protein tyrosine kinase adaptor activity			ovary(5)|lung(1)	6	all_cancers(14;3.31e-18)|all_epithelial(13;5.3e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.58e-23)			ACTGGGAACGGGAGATGCAGA	0.567000													10	57					0	0	0.000978159	0	0
PCF11	51585	broad.mit.edu	37	11	82868661	82868661	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:82868661C>T	uc001ozx.3	+	1	525	c.180C>T	c.(178-180)GCC>GCT	p.A60A	PCF11_uc010rsu.1_Silent_p.A60A|PCF11_uc001ozy.2_Silent_p.A60A	NM_015885	NP_056969	O94913	PCF11_HUMAN	pre-mRNA cleavage complex II protein Pcf11	60	CID.				mRNA 3'-end processing|mRNA cleavage|nuclear mRNA splicing, via spliceosome|termination of RNA polymerase II transcription	mRNA cleavage factor complex				ovary(1)	1						TCATCGAGGCCCAAACCGCCA	0.512000													10	96					0	0	0.000978159	0	0
FAT3	120114	broad.mit.edu	37	11	92086290	92086290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:92086290C>T	uc001pdj.3	+	1	1029	c.1012C>T	c.(1012-1014)CCC>TCC	p.P338S		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	338	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GGAGAGCTTTCCCTATGGCTA	0.453000										TCGA Ovarian(4;0.039)			75	385					0	0	0.000781405	0	0
FAT3	120114	broad.mit.edu	37	11	92532476	92532477	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:92532476_92532477CG>AT	uc001pdj.3	+	9	6314_6315	c.6297_6298CG>AT	c.(6295-6300)CCCGGG>CCATGG	p.G2100W		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2100	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				ATGCGGAACCCGGGACTCTGAT	0.455000										TCGA Ovarian(4;0.039)			20	481					0	0	6.4e-05	0	0
FAT3	120114	broad.mit.edu	37	11	92534543	92534544	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:92534543_92534544CC>AA	uc001pdj.3	+	9	8381_8382	c.8364_8365CC>AA	c.(8362-8367)CCCCTG>CCAATG	p.L2789M		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2789	Extracellular (Potential).|Cadherin 25.				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCACTATACCCCTGGACAAAGT	0.416000										TCGA Ovarian(4;0.039)			14	515					0	0	6.4e-05	0	0
SLC36A4	120103	broad.mit.edu	37	11	92918935	92918936	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:92918935_92918936CC>AA	uc001pdn.2	-	2	197_198	c.100_101GG>TT	c.(100-102)GGG>TTG	p.G34L	SLC36A4_uc001pdm.2_5'UTR	NM_152313	NP_689526	Q6YBV0	S36A4_HUMAN	solute carrier family 36 (proton/amino acid	34					L-alanine transport|proline transport|tryptophan transport	integral to membrane	symporter activity			ovary(2)|upper_aerodigestive_tract(1)	3		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				ATCTGATGTCCCATCAAAATTC	0.351000													12	657					0	0	6.4e-05	0	0
CNTN5	53942	broad.mit.edu	37	11	100126624	100126624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:100126624C>T	uc001pga.2	+	17	2477	c.2138C>T	c.(2137-2139)TCC>TTC	p.S713F	CNTN5_uc001pfz.2_Missense_Mutation_p.S713F|CNTN5_uc001pgb.2_Missense_Mutation_p.S639F|CNTN5_uc010ruk.1_5'UTR	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	713	Fibronectin type-III 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGCCCATTTTCCCTGGGCTGG	0.493000													14	60					0	0	0.00074312	0	0
OR6T1	219874	broad.mit.edu	37	11	123814281	123814281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:123814281C>T	uc010sab.1	-	1	265	c.265G>A	c.(265-267)GAT>AAT	p.D89N		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	89	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		ATGGTGTGATCCCCCGTGAGG	0.502000													16	45					0	0	0.000566183	0	0
VSIG2	23584	broad.mit.edu	37	11	124618286	124618286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr11:124618286C>T	uc001qas.2	-	6	927	c.851G>A	c.(850-852)CGG>CAG	p.R284Q	VSIG2_uc001qat.2_Missense_Mutation_p.R284Q	NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	284	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		TCCTGCTCACCGAAGGTCACT	0.577000													10	38					0	0	0.000978159	0	0
AKAP3	10566	broad.mit.edu	37	12	4735856	4735856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:4735856G>A	uc001qnb.3	-	4	2441	c.2212C>T	c.(2212-2214)CAT>TAT	p.H738Y		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	738					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						ATTTCATTATGGATAGCTTGA	0.502000													10	56					0	0	0.000442599	0	0
KCNA6	3742	broad.mit.edu	37	12	4919960	4919960	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:4919960C>T	uc001qng.2	+	1	1619	c.753C>T	c.(751-753)CTC>CTT	p.L251L		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	251						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						CCTCCTCACTCAGTACTCTTG	0.562000										HNSCC(72;0.22)			10	97					0	0	0.000673444	0	0
NTF3	4908	broad.mit.edu	37	12	5603651	5603651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:5603651G>A	uc001qnl.3	+	1	354	c.271G>A	c.(271-273)GAA>AAA	p.E91K	NTF3_uc001qnk.3_Missense_Mutation_p.E104K	NM_002527	NP_002518	P20783	NTF3_HUMAN	neurotrophin 3 isoform 2 preproprotein	91					signal transduction	extracellular region	growth factor activity|neurotrophin receptor binding			pancreas(1)	1						AATGGACACCGAACTGCTGCG	0.617000													9	48					0	0	0.000274275	0	0
ZNF705A	440077	broad.mit.edu	37	12	8329751	8329751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:8329751C>T	uc001qud.1	+	5	547	c.475C>T	c.(475-477)CCT>TCT	p.P159S		NM_001004328	NP_001004328	Q6ZN79	Z705A_HUMAN	zinc finger protein 705A	159					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				Kidney(36;0.0877)		TCTTTTCTCCCCTAAACCACA	0.373000													33	155					0	0	0.000339439	0	0
CLEC1A	51267	broad.mit.edu	37	12	10224049	10224049	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:10224049C>T	uc001qxb.2	-	6	810	c.726G>A	c.(724-726)GGG>GGA	p.G242G	CLEC1A_uc009zhf.2_Silent_p.G154G|CLEC1A_uc001qxc.2_Silent_p.G154G|CLEC1A_uc001qxd.2_Silent_p.G199G|CLEC1A_uc010sgx.1_Silent_p.G140G	NM_016511	NP_057595	Q8NC01	CLC1A_HUMAN	C-type lectin-like receptor-1	242	C-type lectin.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to plasma membrane|intracellular	sugar binding|transmembrane receptor activity			ovary(1)|central_nervous_system(1)	2						AGAAGATCATCCCATTAAGGA	0.443000													37	164					0	0	0.000509022	0	0
SLC38A2	54407	broad.mit.edu	37	12	46765012	46765012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:46765012G>A	uc001rpg.2	-	2	505	c.65C>T	c.(64-66)TCC>TTC	p.S22F	SLC38A2_uc001rph.2_5'UTR	NM_018976	NP_061849	Q96QD8	S38A2_HUMAN	solute carrier family 38, member 2	22	Cytoplasmic (Potential).|Regulates protein turnover upon amino acid deprivation (By similarity).				cellular nitrogen compound metabolic process|glutamate secretion|neurotransmitter secretion|sodium ion transport	integral to membrane|plasma membrane	amino acid transmembrane transporter activity|symporter activity			urinary_tract(1)|skin(1)	2	Lung SC(27;0.192)|Renal(347;0.236)		OV - Ovarian serous cystadenocarcinoma(5;0.0048)|Epithelial(2;0.0374)	GBM - Glioblastoma multiforme(48;0.226)		GTCGCTGTTGGAACTGTAGCT	0.507000													28	122					0	0	0.000279167	0	0
KRT78	196374	broad.mit.edu	37	12	53240070	53240070	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:53240070C>T	uc001sbc.1	-	4	731	c.667G>A	c.(667-669)GAT>AAT	p.D223N		NM_173352	NP_775487	Q8N1N4	K2C78_HUMAN	keratin 5b	223	Coil 1B.|Rod.					keratin filament	protein binding|structural molecule activity			ovary(2)	2						AAAACCCCATCCACATCCTGG	0.517000													5	40					0	0	8.12818e-05	0	0
PDE1B	5153	broad.mit.edu	37	12	54971043	54971043	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:54971043C>T	uc001sgd.1	+	15	1708	c.1542C>T	c.(1540-1542)TCC>TCT	p.S514S	PDE1B_uc010soz.1_Silent_p.S377S|PDE1B_uc010spa.1_Silent_p.S473S|PDE1B_uc001sgf.2_Silent_p.S377S|PDE1B_uc001sge.2_Silent_p.S494S|PDE1B_uc009znq.2_Silent_p.S310S	NM_000924	NP_000915	Q01064	PDE1B_HUMAN	phosphodiesterase 1B isoform 1	514					activation of phospholipase C activity|apoptosis|nerve growth factor receptor signaling pathway|platelet activation	cytosol|nucleus	3',5'-cyclic-AMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			upper_aerodigestive_tract(1)|ovary(1)	2						ACGAGCTGTCCCCCTGTGAAG	0.557000													13	98					0	0	0.000308642	0	0
ZBTB39	9880	broad.mit.edu	37	12	57397878	57397878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:57397878G>A	uc001sml.1	-	2	910	c.824C>T	c.(823-825)TCC>TTC	p.S275F	RDH16_uc010sqx.1_5'Flank	NM_014830	NP_055645	O15060	ZBT39_HUMAN	zinc finger and BTB domain containing 39	275					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)	1						GCTCAGACAGGAGTTGGTCCC	0.502000													15	78					0	0	0.000422831	0	0
LRP1	4035	broad.mit.edu	37	12	57574473	57574473	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:57574473C>T	uc001snd.2	+	33	5876	c.5410C>T	c.(5410-5412)CAG>TAG	p.Q1804*		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	1804	Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	GTGGGCTGATCAGGTGTCGGA	0.612000													5	34					0	0	0.000602214	0	0
STAC3	246329	broad.mit.edu	37	12	57643378	57643378	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:57643378G>A	uc001snp.2	-	2	237	c.42C>T	c.(40-42)TTC>TTT	p.F14F	R3HDM2_uc010srn.1_RNA|STAC3_uc009zpl.2_Intron|STAC3_uc001snq.2_Intron|STAC3_uc010srm.1_Intron	NM_145064	NP_659501	Q96MF2	STAC3_HUMAN	SH3 and cysteine rich domain 3	14					intracellular signal transduction		identical protein binding|metal ion binding			ovary(2)|skin(1)	3						TCTCTGCTGGGAAGGAGGGCT	0.527000													7	47					0	0	0.000274275	0	0
RASSF3	283349	broad.mit.edu	37	12	65004498	65004498	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:65004498A>G	uc001ssd.2	+	1	206	c.86A>G	c.(85-87)CAG>CGG	p.Q29R	RASSF3_uc009zqn.2_RNA	NM_178169	NP_835463	Q86WH2	RASF3_HUMAN	Ras association (RalGDS/AF-6) domain family	29					signal transduction	cytoplasm|microtubule	identical protein binding				0			Lung(2;0.00133)|LUAD - Lung adenocarcinoma(6;0.0665)|LUSC - Lung squamous cell carcinoma(43;0.132)	GBM - Glioblastoma multiforme(28;0.0611)		AGAGCGCCCCAGGGCAAGCCC	0.716000													4	28					0	0	3.59834e-05	0	0
LGR5	8549	broad.mit.edu	37	12	71976315	71976316	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:71976315_71976316CC>AA	uc001swl.2	+	17	1680_1681	c.1632_1633CC>AA	c.(1630-1635)TCCCCA>TCAACA	p.P545T	LGR5_uc001swm.2_Missense_Mutation_p.P521T|LGR5_uc001swn.1_RNA	NM_003667	NP_003658	O75473	LGR5_HUMAN	leucine-rich repeat-containing G protein-coupled	545	Extracellular (Potential).					integral to plasma membrane	protein-hormone receptor activity			lung(4)|skin(3)|ovary(1)|pancreas(1)	9						GTTCACCTTCCCCAGGTGAGAA	0.450000													10	300					0	0	6.4e-05	0	0
MRPL42	28977	broad.mit.edu	37	12	93881294	93881294	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:93881294G>C	uc001tcr.2	+	5	399	c.241G>C	c.(241-243)GTG>CTG	p.V81L	MRPL42_uc001tcq.2_Missense_Mutation_p.V81L|MRPL42_uc001tcs.2_Missense_Mutation_p.V81L|MRPL42_uc001tct.2_RNA	NM_172177	NP_751917	Q9Y6G3	RM42_HUMAN	mitochondrial ribosomal protein L42 isoform a	81					translation	mitochondrial small ribosomal subunit	structural constituent of ribosome			ovary(2)	2						GCCAGATCCTGTGCATAATAA	0.373000													3	86					0	0	0.00024832	0	0
C12orf63	374467	broad.mit.edu	37	12	97137626	97137626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:97137626C>T	uc001tet.1	+	21	2848	c.2770C>T	c.(2770-2772)CCC>TCC	p.P924S		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	924										skin(6)|ovary(1)	7						CAAGGAATCTCCCTCTTCAAA	0.393000													14	45					0	0	0.000219431	0	0
ANO4	121601	broad.mit.edu	37	12	101477520	101477520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:101477520G>A	uc010svm.1	+	16	2032	c.1460G>A	c.(1459-1461)GGA>GAA	p.G487E	ANO4_uc001thw.2_Missense_Mutation_p.G452E|ANO4_uc001thx.2_Missense_Mutation_p.G487E|ANO4_uc001thy.2_Intron	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	487	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						CCAATTTCTGGAAAGCCAGAA	0.348000										HNSCC(74;0.22)			17	84					0	0	0.000422831	0	0
WDR66	144406	broad.mit.edu	37	12	122396265	122396265	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:122396265G>A	uc009zxk.2	+	12	1960	c.1818G>A	c.(1816-1818)AAG>AAA	p.K606K		NM_144668	NP_653269	Q8TBY9	WDR66_HUMAN	WD repeat domain 66	606	WD 6.						calcium ion binding			ovary(1)|skin(1)	2	all_neural(191;0.0496)|Medulloblastoma(191;0.0922)			OV - Ovarian serous cystadenocarcinoma(86;0.000155)|Epithelial(86;0.000634)|BRCA - Breast invasive adenocarcinoma(302;0.248)		TAGAGCCCAAGGATGCCATTT	0.448000													16	91					0	0	0.000308642	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834175	125834175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr12:125834175G>A	uc001uhe.1	+	2	238	c.230G>A	c.(229-231)CGA>CAA	p.R77Q		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	77	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TTCATCTACCGAGCCAGGACA	0.507000													16	62					0	0	0.000566183	0	0
TUBA3C	7278	broad.mit.edu	37	13	19751364	19751364	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:19751364C>T	uc009zzj.2	-	4	808	c.759G>A	c.(757-759)ACG>ACA	p.T253T		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	253					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity	p.T253T(1)		ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TCTGGAATTCCGTCAAGTCCA	0.612000													14	59					0	0	0.000308642	0	0
RNF17	56163	broad.mit.edu	37	13	25373588	25373588	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:25373588C>T	uc001upr.2	+	12	1496	c.1455C>T	c.(1453-1455)ATC>ATT	p.I485I	RNF17_uc010tdd.1_Silent_p.I344I|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.I485I|RNF17_uc001ups.2_Silent_p.I424I	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	485					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		GAGGAACTATCACAGAATTAA	0.323000													17	157					0	0	0.000175454	0	0
NUPL1	9818	broad.mit.edu	37	13	25881994	25881994	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:25881994C>T	uc001uqi.2	+	2	404	c.158C>T	c.(157-159)CCA>CTA	p.P53L	NUPL1_uc001uqg.1_Missense_Mutation_p.P53L|NUPL1_uc001uqj.2_Missense_Mutation_p.P53L	NM_014089	NP_054808	Q9BVL2	NUPL1_HUMAN	nucleoporin like 1 isoform a	53	14 X 2 AA repeats of F-G.				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	nuclear membrane|nuclear pore					0		Lung SC(185;0.0225)|Breast(139;0.0351)		all cancers(112;0.0092)|Epithelial(112;0.0477)|OV - Ovarian serous cystadenocarcinoma(117;0.165)|GBM - Glioblastoma multiforme(144;0.244)		ACTTCAACTCCAGCAACTACA	0.428000													16	103					0	0	0.000566183	0	0
LNX2	222484	broad.mit.edu	37	13	28136618	28136618	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:28136618G>A	uc001url.3	-	5	1465	c.1156C>T	c.(1156-1158)CGA>TGA	p.R386*	LNX2_uc001urm.1_Nonsense_Mutation_p.R386*	NM_153371	NP_699202	Q8N448	LNX2_HUMAN	ligand of numb-protein X 2	386	PDZ 2.						zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)|central_nervous_system(1)	6		Lung SC(185;0.0156)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.113)|all cancers(112;0.127)|Epithelial(112;0.248)		GCCAGCACTCGGTCATTGCTG	0.527000													20	105					0	0	0.00047179	0	0
FLT1	2321	broad.mit.edu	37	13	29005419	29005419	+	Missense_Mutation	SNP	C	T	T	rs55687105		TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:29005419C>T	uc001usb.3	-	7	1127	c.842G>A	c.(841-843)CGA>CAA	p.R281Q	FLT1_uc010aar.1_Missense_Mutation_p.R281Q|FLT1_uc001usc.3_Missense_Mutation_p.R281Q|FLT1_uc010tdp.1_Missense_Mutation_p.R281Q	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	281	Extracellular (Potential).|Ig-like C2-type 3.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TTGGTCAATTCGTCGCCTTAC	0.343000													16	88					0	0	0.00074312	0	0
C13orf36	400120	broad.mit.edu	37	13	37269436	37269436	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:37269436C>T	uc001uvt.3	+	2	667	c.221C>T	c.(220-222)TCC>TTC	p.S74F		NM_203451	NP_982276	A2A2V5	CM036_HUMAN	hypothetical protein LOC400120	74	Poly-Ser.					integral to membrane				skin(1)	1						TCCTCCAGTTCCTCCTACCCA	0.448000													18	108					0	0	0.00074312	0	0
LOC220429	220429	broad.mit.edu	37	13	50465016	50465016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:50465016G>A	uc001vdk.2	+	1	472	c.290G>A	c.(289-291)AGC>AAC	p.S97N		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GAAAAATTTAGCCTTGTTCAA	0.423000													8	78					0	0	0.000157383	0	0
PCDH9	5101	broad.mit.edu	37	13	67205452	67205452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:67205452C>T	uc001vik.2	-	4	3922	c.3230G>A	c.(3229-3231)GGA>GAA	p.G1077E	PCDH9_uc010aei.2_RNA|PCDH9_uc001vil.2_Missense_Mutation_p.G1043E|PCDH9_uc010thl.1_Intron	NM_203487	NP_982354	Q9HC56	PCDH9_HUMAN	protocadherin 9 isoform 1 precursor	1077	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)|skin(1)	6		Hepatocellular(98;0.0906)|Breast(118;0.107)		GBM - Glioblastoma multiforme(99;0.00819)		GATCAGGGTTCCACTACCCAC	0.547000													9	53					0	0	0.000673444	0	0
C13orf34	79866	broad.mit.edu	37	13	73303136	73303137	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:73303136_73303137CC>AA	uc001viv.1	+	2	177_178	c.58_59CC>AA	c.(58-60)CCT>AAT	p.P20N	C13orf37_uc001viu.2_5'Flank|C13orf34_uc010thq.1_Translation_Start_Site|C13orf34_uc010aen.1_Missense_Mutation_p.P95N|C13orf34_uc010thr.1_Translation_Start_Site|C13orf34_uc001viw.1_Missense_Mutation_p.P20N	NM_024808	NP_079084	Q6PGQ7	BORA_HUMAN	aurora borealis	20					cell division|mitosis|regulation of mitosis|regulation of mitotic spindle organization|regulation of protein localization		protein kinase binding				0		Breast(118;0.0735)		GBM - Glioblastoma multiforme(99;0.000227)		AGGAAGGATCCCTGTTTTAAAT	0.356000													8	210					0	0	6.4e-05	0	0
UBAC2	337867	broad.mit.edu	37	13	99966405	99966405	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr13:99966405C>T	uc001voa.3	+	5	928	c.444C>T	c.(442-444)GTC>GTT	p.V148V	UBAC2_uc010tiu.1_Silent_p.V170V|UBAC2_uc001vob.3_Silent_p.V121V|UBAC2_uc010tiv.1_Intron|UBAC2_uc001vod.2_Silent_p.V35V|UBAC2_uc001voc.2_Silent_p.V113V|UBAC2_uc010tiw.1_Intron|UBAC2_uc001voh.2_5'UTR	NM_001144072	NP_001137544	Q8NBM4	UBAC2_HUMAN	UBA domain containing 2 isoform 1	148	Extracellular (Potential).					integral to membrane				ovary(1)	1	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TACCAAGAGTCCAAGTGGCAC	0.358000													23	130					0	0	0.00106085	0	0
OR4M1	441670	broad.mit.edu	37	14	20248894	20248894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:20248894G>A	uc010tku.1	+	1	413	c.413G>A	c.(412-414)CGA>CAA	p.R138Q		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	138	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATCATGAATCGACGTCTCTGC	0.522000													29	259					0	0	0.000279167	0	0
OR4K5	79317	broad.mit.edu	37	14	20389533	20389533	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:20389533C>T	uc010tkw.1	+	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTTGCATCTTCATCTATGTGT	0.398000													29	222					0	0	0.000184323	0	0
OR4K1	79544	broad.mit.edu	37	14	20404405	20404405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:20404405G>A	uc001vwj.1	+	1	580	c.580G>A	c.(580-582)GAA>AAA	p.E194K		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	194	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		GGATACATATGAAATGGAAAT	0.443000													17	160					0	0	0.00074312	0	0
OR4K1	79544	broad.mit.edu	37	14	20404433	20404433	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:20404433G>A	uc001vwj.1	+	1	608	c.608G>A	c.(607-609)AGT>AAT	p.S203N		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	203	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		CTAACGAACAGTGGCCTGATA	0.453000													14	115					0	0	0.000308642	0	0
PARP2	10038	broad.mit.edu	37	14	20815040	20815040	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:20815040G>A	uc001vxc.2	+	4	359	c.331G>A	c.(331-333)GGA>AGA	p.G111R	PARP2_uc001vxd.2_Missense_Mutation_p.G98R|PARP2_uc001vxb.1_Missense_Mutation_p.G111R	NM_005484	NP_005475	Q9UGN5	PARP2_HUMAN	poly (ADP-ribose) polymerase family, member 2	111					protein ADP-ribosylation	nucleolus|nucleoplasm	DNA binding|NAD+ ADP-ribosyltransferase activity			ovary(1)|pancreas(1)	2	all_cancers(95;0.00092)	all_lung(585;0.235)	Epithelial(56;5.34e-07)|all cancers(55;3.7e-06)	GBM - Glioblastoma multiforme(265;0.00888)|READ - Rectum adenocarcinoma(17;0.0649)		GTATTGTGAAGGAAATGATGT	0.363000								Direct_reversal_of_damage|PARP_enzymes_that_bind_to_DNA					14	94					0	0	0.000308642	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884117	24884117	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:24884117C>T	uc001wpf.3	+	9	3480	c.3162C>T	c.(3160-3162)ATC>ATT	p.I1054I		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1054					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						CCCTGGACATCGACCTCCTGC	0.652000													11	70					0	0	0.000978159	0	0
AP4S1	11154	broad.mit.edu	37	14	31539121	31539121	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:31539121G>T	uc001wqy.3	+	3	593	c.211G>T	c.(211-213)GTT>TTT	p.V71F	AP4S1_uc001wqw.3_Missense_Mutation_p.V71F|AP4S1_uc001wqx.3_Missense_Mutation_p.V71F|AP4S1_uc010amh.2_Missense_Mutation_p.V71F|AP4S1_uc001wqz.3_RNA	NM_001128126	NP_001121598	Q9Y587	AP4S1_HUMAN	adaptor-related protein complex 4, sigma 1	71						coated pit|Golgi apparatus	protein transporter activity				0	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.221)	GBM - Glioblastoma multiforme(265;0.00553)		TGTGGTTGGAGTTAATGACAC	0.338000													61	318					2.02627e-32	3.05472e-31	0.000781405	1	0
NPAS3	64067	broad.mit.edu	37	14	33684575	33684575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:33684575G>A	uc001wru.2	+	3	392	c.328G>A	c.(328-330)GGG>AGG	p.G110R	NPAS3_uc001wrs.2_Missense_Mutation_p.G80R|NPAS3_uc001wrt.2_Missense_Mutation_p.G80R|NPAS3_uc001wrv.2_Missense_Mutation_p.G80R|NPAS3_uc001wrw.2_Missense_Mutation_p.G8R	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	110					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		TGCTAACCAGGGGGACCCTCC	0.473000													14	70					0	0	0.000219431	0	0
LRFN5	145581	broad.mit.edu	37	14	42355964	42355964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:42355964C>T	uc001wvm.2	+	3	1334	c.136C>T	c.(136-138)CCA>TCA	p.P46S	LRFN5_uc010ana.2_Missense_Mutation_p.P46S	NM_152447	NP_689660	Q96NI6	LRFN5_HUMAN	leucine rich repeat and fibronectin type III	46	Extracellular (Potential).|LRRNT.					integral to membrane				ovary(5)|pancreas(2)|central_nervous_system(1)	8			LUAD - Lung adenocarcinoma(50;0.0223)|Lung(238;0.0728)	GBM - Glioblastoma multiforme(112;0.00847)		TTTATTTGTTCCACCAAACAT	0.408000										HNSCC(30;0.082)			10	32					0	0	0.00010058	0	0
MTHFD1	4522	broad.mit.edu	37	14	64909104	64909105	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:64909104_64909105AC>TT	uc001xhb.2	+	21	2507_2508	c.2120_2121AC>TT	c.(2119-2121)CAC>CTT	p.H707L	MTHFD1_uc010aqf.2_Missense_Mutation_p.H763L	NM_005956	NP_005947	P11586	C1TC_HUMAN	methylenetetrahydrofolate dehydrogenase 1	707	Formyltetrahydrofolate synthetase.				folic acid metabolic process|folic acid-containing compound biosynthetic process|histidine biosynthetic process|methionine biosynthetic process|one-carbon metabolic process|purine nucleotide biosynthetic process	cytosol|mitochondrion	ATP binding|formate-tetrahydrofolate ligase activity|methenyltetrahydrofolate cyclohydrolase activity|methylenetetrahydrofolate dehydrogenase (NADP+) activity|methylenetetrahydrofolate dehydrogenase|protein binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(108;8.7e-12)|all cancers(60;3.29e-11)|BRCA - Breast invasive adenocarcinoma(234;0.0488)	NADH(DB00157)|Tetrahydrofolic acid(DB00116)	CTCAAGATGCACGGGGGCGGCC	0.525000													8	52					0	0	6.4e-05	0	0
SPTB	6710	broad.mit.edu	37	14	65241884	65241884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:65241884C>T	uc001xht.2	-	22	4855	c.4801G>A	c.(4801-4803)GGC>AGC	p.G1601S	SPTB_uc001xhr.2_Missense_Mutation_p.G1601S|SPTB_uc001xhs.2_Missense_Mutation_p.G1601S|SPTB_uc001xhu.2_Missense_Mutation_p.G1601S|SPTB_uc010aqi.2_Missense_Mutation_p.G262S	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	1601	Spectrin 13.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TCCTGCTCGCCAATCCAGGCC	0.637000													12	66					0	0	0.000151284	0	0
Unknown	0	broad.mit.edu	37	14	66480160	66480160	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:66480160C>T	uc001xit.2	-	1	473	c.348G>A	c.(346-348)GCG>GCA	p.A116A						SubName: Full=Nuclease sensitive element binding protein-1;																		TTGCTGCCTTCGCACCCTTTT	0.488000													17	77					0	0	0.000132079	0	0
ABCD4	5826	broad.mit.edu	37	14	74759505	74759505	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:74759505G>A	uc001xpr.2	-	9	1034	c.882C>T	c.(880-882)TTC>TTT	p.F294F	ABCD4_uc001xps.2_Silent_p.F135F|ABCD4_uc001xpt.2_Silent_p.F135F|ABCD4_uc010tur.1_Silent_p.F190F|ABCD4_uc001xpu.2_Silent_p.F31F|ABCD4_uc001xpv.2_RNA	NM_005050	NP_005041	O14678	ABCD4_HUMAN	ATP-binding cassette, sub-family D, member 4	294	ABC transmembrane type-1.|Helical; (Potential).					ATP-binding cassette (ABC) transporter complex|integral to membrane|peroxisomal membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			upper_aerodigestive_tract(2)|large_intestine(1)|ovary(1)	4				BRCA - Breast invasive adenocarcinoma(234;0.00153)		AGACCCCGCTGAAAATGGGGA	0.537000													8	46					0	0	0.000673444	0	0
TTLL5	23093	broad.mit.edu	37	14	76156614	76156614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:76156614C>T	uc001xrx.2	+	6	656	c.451C>T	c.(451-453)CAC>TAC	p.H151Y	TTLL5_uc001xrw.1_Missense_Mutation_p.H151Y|TTLL5_uc010ask.1_Missense_Mutation_p.H151Y	NM_015072	NP_055887	Q6EMB2	TTLL5_HUMAN	tubulin tyrosine ligase-like family, member 5	151	TTL.				protein modification process|transcription, DNA-dependent	centrosome|cilium|microtubule basal body|nucleus	tubulin-tyrosine ligase activity			ovary(2)|central_nervous_system(1)	3				BRCA - Breast invasive adenocarcinoma(234;0.029)		CAAGGCTTTTCACATCCTCCC	0.463000													11	52					0	0	0.000978159	0	0
SERPINA9	327657	broad.mit.edu	37	14	94929442	94929442	+	Silent	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:94929442G>T	uc001ydf.2	-	5	1457	c.1296C>A	c.(1294-1296)CCC>CCA	p.P432P	SERPINA9_uc001yde.2_Silent_p.P332P|SERPINA9_uc010avc.2_Silent_p.P283P|SERPINA9_uc001ydg.2_Silent_p.P396P	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	414					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		AGGATTTAGTGGGATTTTCCA	0.428000													17	68					1.02788e-11	1.54616e-10	0.000566183	1	0
ADAM6	8755	broad.mit.edu	37	14	107283032	107283032	+	RNA	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr14:107283032C>T	uc010tyt.1	-	1		c.56G>A			uc001ytb.1_Silent_p.V37V					Parts of antibodies, mostly variable regions.												0						AGGAGACCTTCACTGAGGCCC	0.572000													17	87					0	0	0.000958276	0	0
MKRN3	7681	broad.mit.edu	37	15	23811099	23811099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:23811099C>T	uc001ywh.3	+	1	646	c.170C>T	c.(169-171)CCC>CTC	p.P57L	MKRN3_uc001ywi.2_Missense_Mutation_p.P57L|MKRN3_uc010ayi.1_Missense_Mutation_p.P57L	NM_005664	NP_005655	Q13064	MKRN3_HUMAN	makorin ring finger protein 3	57						ribonucleoprotein complex	ligase activity|nucleic acid binding|zinc ion binding			lung(6)|large_intestine(2)|ovary(2)	10		all_cancers(20;8.44e-25)|all_epithelial(15;3.69e-22)|Lung NSC(15;2.96e-18)|all_lung(15;2.8e-17)|Breast(32;0.000353)|Colorectal(260;0.14)		all cancers(64;3.02e-06)|Epithelial(43;1.94e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0012)		GGCTGGGCCCCCTTCCCTGTA	0.687000													7	26					0	0	8.12818e-05	0	0
TMCO5A	145942	broad.mit.edu	37	15	38229151	38229151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:38229151G>A	uc001zjw.2	+	3	347	c.244G>A	c.(244-246)GAG>AAG	p.E82K	TMCO5A_uc001zjv.1_Missense_Mutation_p.E82K|TMCO5A_uc010bbc.1_Missense_Mutation_p.E82K	NM_152453	NP_689666	Q8N6Q1	TMC5A_HUMAN	transmembrane and coiled-coil domains 5A	82	Potential.					integral to membrane				central_nervous_system(1)	1						GCAGGAGCTGGAGGAAGAAAC	0.483000													7	30					0	0	0.000157383	0	0
THBS1	7057	broad.mit.edu	37	15	39883391	39883391	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:39883391G>A	uc001zkh.2	+	15	2433	c.2254_splice	c.e15-1	p.D752_splice	THBS1_uc010bbi.2_Splice_Site_p.D224_splice	NM_003246	NP_003237	P07996	TSP1_HUMAN	thrombospondin 1 precursor						activation of MAPK activity|anti-apoptosis|apoptosis|cell adhesion|cell cycle arrest|cell migration|cellular response to heat|chronic inflammatory response|engulfment of apoptotic cell|immune response|induction of apoptosis|negative regulation of angiogenesis|negative regulation of antigen processing and presentation of peptide or polysaccharide antigen via MHC class II|negative regulation of blood vessel endothelial cell migration|negative regulation of caspase activity|negative regulation of cGMP-mediated signaling|negative regulation of dendritic cell antigen processing and presentation|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of focal adhesion assembly|negative regulation of interleukin-12 production|negative regulation of nitric oxide mediated signal transduction|negative regulation of plasma membrane long-chain fatty acid transport|negative regulation of plasminogen activation|peptide cross-linking|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of fibroblast migration|positive regulation of macrophage activation|positive regulation of macrophage chemotaxis|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of reactive oxygen species metabolic process|positive regulation of transforming growth factor beta receptor signaling pathway|positive regulation of transforming growth factor-beta1 production|positive regulation of translation|positive regulation of tumor necrosis factor biosynthetic process|response to calcium ion|response to drug|response to glucose stimulus|response to hypoxia|response to magnesium ion|response to progesterone stimulus|sprouting angiogenesis	external side of plasma membrane|extracellular matrix|fibrinogen complex|platelet alpha granule lumen	calcium ion binding|collagen V binding|eukaryotic cell surface binding|fibrinogen binding|fibroblast growth factor 2 binding|fibronectin binding|heparin binding|identical protein binding|integrin binding|laminin binding|low-density lipoprotein particle binding|phosphatidylserine binding|proteoglycan binding|structural molecule activity|transforming growth factor beta binding			ovary(3)|central_nervous_system(3)	6		all_cancers(109;1.35e-17)|all_epithelial(112;2.07e-15)|Lung NSC(122;4.44e-11)|all_lung(180;1.11e-09)|Melanoma(134;0.0574)|Colorectal(260;0.117)|Ovarian(310;0.223)		GBM - Glioblastoma multiforme(113;2.77e-06)|BRCA - Breast invasive adenocarcinoma(123;0.105)	Becaplermin(DB00102)	TCTCTTTGCAGGACAACTGTC	0.433000													11	67					0	0	0.00010058	0	0
FGF7	2252	broad.mit.edu	37	15	49776595	49776595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:49776595G>A	uc001zxn.2	+	4	1008	c.479G>A	c.(478-480)GGA>GAA	p.G160E	C15orf33_uc001zxl.2_Intron|C15orf33_uc001zxm.2_Intron	NM_002009	NP_002000	P21781	FGF7_HUMAN	fibroblast growth factor 7 precursor	160					actin cytoskeleton reorganization|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|mesenchymal cell proliferation|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of keratinocyte migration|positive regulation of keratinocyte proliferation|positive regulation of peptidyl-tyrosine phosphorylation|protein localization at cell surface|secretion by lung epithelial cell involved in lung growth		chemoattractant activity|growth factor activity				0		all_lung(180;0.00391)		all cancers(107;3.61e-08)|GBM - Glioblastoma multiforme(94;4.06e-05)	Palifermin(DB00039)	ACACACAACGGAGGGGAAATG	0.353000													15	57					0	0	0.000308642	0	0
DMXL2	23312	broad.mit.edu	37	15	51791364	51791364	+	Silent	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:51791364A>G	uc002abf.2	-	18	4282	c.4057T>C	c.(4057-4059)TTA>CTA	p.L1353L	DMXL2_uc010ufy.1_Silent_p.L1353L|DMXL2_uc010bfa.2_Intron	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	1353						cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		ATCAATTCTAACAGCTGAGTT	0.393000													15	61					0	0	0.000219431	0	0
LCTL	197021	broad.mit.edu	37	15	66850213	66850213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:66850213C>T	uc002aqc.2	-	8	901	c.769G>A	c.(769-771)GGA>AGA	p.G257R	LCTL_uc002aqd.3_Missense_Mutation_p.G84R|LCTL_uc010bhw.2_5'UTR	NM_207338	NP_997221	Q6UWM7	LCTL_HUMAN	lactase-like precursor	257	Extracellular (Potential).				carbohydrate metabolic process	endoplasmic reticulum membrane|integral to membrane	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(2)	2						AATGAAATTCCCACCAGACCT	0.532000													19	110					0	0	0.000132079	0	0
LOXL1	4016	broad.mit.edu	37	15	74219544	74219544	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:74219544C>T	uc002awc.1	+	1	756	c.420C>T	c.(418-420)GCC>GCT	p.A140A	uc002awa.1_Intron|uc002awb.1_Intron	NM_005576	NP_005567	Q08397	LOXL1_HUMAN	lysyl oxidase-like 1 preproprotein	140					protein deamination	extracellular space	copper ion binding				0						CGGGCATGGCCCGGGCCCGCA	0.741000													4	15					0	0	0.000602214	0	0
EDC3	80153	broad.mit.edu	37	15	74948195	74948195	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:74948195G>A	uc002ayn.2	-	7	1187	c.699C>T	c.(697-699)TCC>TCT	p.S233S	EDC3_uc002ayo.2_Silent_p.S233S|EDC3_uc002aym.2_Silent_p.S233S	NM_001142443	NP_001135915	Q96F86	EDC3_HUMAN	enhancer of mRNA decapping 3	233	Required for interaction with DDX6 (By similarity).				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding			ovary(1)	1						GGATGCCCCGGGAACGGGTAC	0.502000													14	72					0	0	0.000566183	0	0
FBXO22	26263	broad.mit.edu	37	15	76225310	76225310	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:76225310A>C	uc002bbk.2	+	7	1184	c.1079A>C	c.(1078-1080)AAT>ACT	p.N360T	FBXO22_uc002bbl.2_Missense_Mutation_p.N256T|FBXO22OS_uc002bbm.1_RNA	NM_147188	NP_671717	Q8NEZ5	FBX22_HUMAN	F-box only protein 22 isoform a	360					ubiquitin-dependent protein catabolic process		ubiquitin-protein ligase activity				0						TTCTTTGGAAATGGAGAAATT	0.388000													24	100					0	0	0.000878237	0	0
NTRK3	4916	broad.mit.edu	37	15	88420309	88420309	+	Silent	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:88420309G>T	uc002bme.1	-	19	2539	c.2377C>A	c.(2377-2379)CGA>AGA	p.R793R	NTRK3_uc002bmh.2_Silent_p.R771R|NTRK3_uc002bmf.1_Silent_p.R779R	NM_001012338	NP_001012338	Q16288	NTRK3_HUMAN	neurotrophic tyrosine kinase, receptor, type 3	793	Cytoplasmic (Potential).|Protein kinase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity		ETV6/NTRK3(234)	soft_tissue(85)|kidney(66)|breast(56)|salivary_gland(26)|lung(22)|large_intestine(6)|ovary(6)|stomach(5)|central_nervous_system(3)|pancreas(3)|haematopoietic_and_lymphoid_tissue(2)|skin(1)	281			BRCA - Breast invasive adenocarcinoma(143;0.211)			GGGCAGACTCGGGGCCGCTCC	0.532000			T	ETV6	congenital fibrosarcoma|Secretory breast 					TSP Lung(13;0.10)			11	31					3.86212e-05	0.000574575	0.000673444	1	0
C15orf42	90381	broad.mit.edu	37	15	90118964	90118964	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:90118964C>T	uc002boe.2	+	1	147	c.147C>T	c.(145-147)TTC>TTT	p.F49F		NM_152259	NP_689472	Q7Z2Z1	TICRR_HUMAN	leucine-rich repeat kinase 1	49					cell cycle|DNA repair|DNA replication|formation of translation preinitiation complex|G2/M transition checkpoint|mitotic cell cycle DNA replication checkpoint|regulation of DNA-dependent DNA replication initiation|response to ionizing radiation	nucleus	chromatin binding|protein binding			ovary(4)|central_nervous_system(2)|skin(1)	7	Lung NSC(78;0.0237)|all_lung(78;0.0478)		BRCA - Breast invasive adenocarcinoma(143;0.128)			CCTTCAAGTTCTTTGACTCGC	0.547000													5	13					0	0	8.12818e-05	0	0
MAN2A2	4122	broad.mit.edu	37	15	91462873	91462873	+	Silent	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:91462873G>T	uc010bnz.2	+	23	3424	c.3309G>T	c.(3307-3309)CTG>CTT	p.L1103L	MAN2A2_uc002bqc.2_Silent_p.L1103L|MAN2A2_uc010uql.1_Silent_p.L765L|MAN2A2_uc010uqm.1_Silent_p.L682L|MAN2A2_uc010uqn.1_RNA	NM_006122	NP_006113	P49641	MA2A2_HUMAN	mannosidase, alpha, class 2A, member 2	1103					mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			large_intestine(2)|ovary(1)	3	Lung NSC(78;0.0771)|all_lung(78;0.137)		Lung(145;0.229)			AGGTAGCCCTGGGCAGCCTTT	0.522000													11	374					0.00010058	0.00148981	0.00010058	1	0
PRC1	9055	broad.mit.edu	37	15	91524826	91524827	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:91524826_91524827GG>TT	uc002bqm.2	-	5	731_732	c.574_575CC>AA	c.(574-576)CCA>AAA	p.P192K	PRC1_uc002bqn.2_Missense_Mutation_p.P192K|PRC1_uc002bqo.2_Missense_Mutation_p.P192K|PRC1_uc010uqs.1_Missense_Mutation_p.P151K|PRC1_uc010uqt.1_Missense_Mutation_p.P140K	NM_003981	NP_003972	O43663	PRC1_HUMAN	protein regulator of cytokinesis 1 isoform 1	192	Dimerization.				cytokinesis|mitotic spindle elongation	cytoplasm|nucleus|spindle microtubule|spindle pole	protein binding			ovary(1)|skin(1)	2	Lung NSC(78;0.0987)|all_lung(78;0.175)					GCTTGTGTCTGGGGTGTGGTCT	0.411000													11	544					0	0	6.4e-05	0	0
LUC7L	55692	broad.mit.edu	37	16	270700	270701	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:270700_270701CG>AT	uc002cgc.1	-	3	313_314	c.202_203CG>AT	c.(202-204)CGA>ATA	p.R68I	LUC7L_uc002cga.1_Missense_Mutation_p.R68I|LUC7L_uc002cgd.1_RNA|LUC7L_uc002cge.1_Missense_Mutation_p.R68I	NM_201412	NP_958815	Q9NQ29	LUC7L_HUMAN	LUC7-like isoform b	68							metal ion binding			central_nervous_system(1)	1		all_cancers(16;1.1e-06)|all_epithelial(16;2.71e-06)|Hepatocellular(16;0.000105)|Lung NSC(18;0.0138)|all_lung(18;0.0306)				ATAATCTGCTCGGAGGGCCAAG	0.391000													7	213					0	0	6.4e-05	0	0
ZNF200	7752	broad.mit.edu	37	16	3274343	3274343	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:3274343C>T	uc002cuj.2	-	5	1369	c.737G>A	c.(736-738)CGG>CAG	p.R246Q	ZNF200_uc002cum.3_Missense_Mutation_p.R245Q|ZNF200_uc010bti.2_Missense_Mutation_p.R245Q|ZNF200_uc002cuk.2_Missense_Mutation_p.R246Q|ZNF200_uc002cui.2_Missense_Mutation_p.R245Q|ZNF200_uc002cul.3_Missense_Mutation_p.R245Q	NM_003454	NP_003445	P98182	ZN200_HUMAN	zinc finger protein 200 isoform 1	246					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding				0						CCTTGTCCTCCGATTTCGAGT	0.413000													20	89					0	0	0.000175454	0	0
SEPT12	124404	broad.mit.edu	37	16	4833519	4833519	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:4833519G>A	uc002cxq.2	-	7	811	c.670C>T	c.(670-672)CCC>TCC	p.P224S	SEPT12_uc002cxr.2_Missense_Mutation_p.P178S|SEPT12_uc010bty.2_RNA	NM_144605	NP_653206	Q8IYM1	SEP12_HUMAN	septin 12 isoform 2	224					cell cycle|cell division	cleavage furrow|midbody|perinuclear region of cytoplasm|septin complex|spindle|stress fiber	GDP binding|GTP binding|phosphatidylinositol binding|protein homodimerization activity			skin(1)	1						CACATCTGGGGGTAGACGTCG	0.602000													25	93					0	0	0.000720815	0	0
C16orf89	146556	broad.mit.edu	37	16	5110293	5110293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:5110293C>T	uc010bud.2	-	3	705	c.617G>A	c.(616-618)GGA>GAA	p.G206E	ALG1_uc002cyj.2_Intron|C16orf89_uc002cyk.3_Missense_Mutation_p.G206E	NM_152459	NP_689672	Q6UX73	CP089_HUMAN	hypothetical protein LOC146556 isoform 1	168						extracellular region				ovary(1)|skin(1)	2						CCACCCGGTTCCCAGCAGCTG	0.607000													8	48					0	0	0.000274275	0	0
KIAA0430	9665	broad.mit.edu	37	16	15716921	15716921	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:15716921G>A	uc002ddr.2	-	11	2523	c.2330C>T	c.(2329-2331)TCG>TTG	p.S777L	KIAA0430_uc002ddq.2_Intron|KIAA0430_uc010uzv.1_Missense_Mutation_p.S773L|KIAA0430_uc010uzw.1_Missense_Mutation_p.S776L	NM_014647	NP_055462	Q9Y4F3	LKAP_HUMAN	limkain b1	776						peroxisome	nucleotide binding|RNA binding				0						TTCGCTGCTCGAATTTGCAAT	0.443000													13	79					0	0	0.000219431	0	0
NOMO3	408050	broad.mit.edu	37	16	16355470	16355470	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:16355470C>T	uc002deq.2	+	12	1467	c.1332C>T	c.(1330-1332)ACC>ACT	p.T444T	NOMO3_uc002dep.2_Silent_p.T444T|NOMO3_uc010bvp.1_Silent_p.T277T	NM_001004067	NP_001004067	P69849	NOMO3_HUMAN	nodal modulator 3 precursor	444	Extracellular (Potential).					integral to membrane	carbohydrate binding|carboxypeptidase activity				0				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		CTTTGGTCACCGTGGAGACAG	0.408000													23	96					0	0	0.000184323	0	0
XYLT1	64131	broad.mit.edu	37	16	17235110	17235110	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:17235110A>T	uc002dfa.2	-	7	1572	c.1487T>A	c.(1486-1488)TTC>TAC	p.F496Y		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	496	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GTTCAGCAGGAACCAGTCCGA	0.577000													22	124					0	0	0.000295444	0	0
PRRT2	112476	broad.mit.edu	37	16	29825239	29825239	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:29825239C>T	uc002due.3	+	2	1165	c.864C>T	c.(862-864)TTC>TTT	p.F288F	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|uc002duc.1_5'Flank|PRRT2_uc002dud.2_Silent_p.F288F|PRRT2_uc002duf.1_Silent_p.F288F|C16orf53_uc002dug.3_5'Flank	NM_145239	NP_660282	Q7Z6L0	PRRT2_HUMAN	proline-rich transmembrane protein 2	288	Helical; (Potential).				response to biotic stimulus	integral to membrane					0						TCGTGGCCTTCGCTTATGCTG	0.607000													6	52					0	0	0.000274275	0	0
CLEC3A	10143	broad.mit.edu	37	16	78062066	78062066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr16:78062066G>A	uc002ffh.3	+	2	259	c.178G>A	c.(178-180)GAA>AAA	p.E60K		NM_005752	NP_005743	O75596	CLC3A_HUMAN	C-type lectin domain family 3 member A	60					skeletal system development	extracellular region	sugar binding				0						TGCCTTGAAGGAAATTCAAGC	0.473000													11	49					0	0	0.000151284	0	0
OR1A2	26189	broad.mit.edu	37	17	3101635	3101635	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:3101635A>T	uc002fvd.1	+	1	823	c.823A>T	c.(823-825)ATG>TTG	p.M275L		NM_012352	NP_036484	Q9Y585	OR1A2_HUMAN	olfactory receptor, family 1, subfamily A,	275	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						GATAACTGTGATGTATGTGGC	0.438000													18	116					0	0	0.000958276	0	0
TM4SF5	9032	broad.mit.edu	37	17	4686202	4686202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:4686202G>A	uc002fyw.1	+	4	480	c.449G>A	c.(448-450)CGC>CAC	p.R150H		NM_003963	NP_003954	O14894	T4S5_HUMAN	transmembrane 4 superfamily member 5	150	Extracellular (Potential).					integral to plasma membrane				ovary(1)	1						GCGCCCCCTCGCGTGGTCCCC	0.647000													6	31					0	0	0.000442599	0	0
NLRP1	22861	broad.mit.edu	37	17	5461922	5461922	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:5461922C>T	uc002gci.2	-	4	2649	c.2094G>A	c.(2092-2094)AGG>AGA	p.R698R	NLRP1_uc002gcg.1_Silent_p.R698R|NLRP1_uc002gck.2_Silent_p.R698R|NLRP1_uc002gcj.2_Silent_p.R698R|NLRP1_uc002gcl.2_Silent_p.R698R|NLRP1_uc002gch.3_Silent_p.R698R|NLRP1_uc010clh.2_Silent_p.R698R	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	698					defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GCATCAGGTTCCTCCCCTGAG	0.557000													12	53					0	0	0.00010058	0	0
EIF4A1	1973	broad.mit.edu	37	17	7476160	7476160	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:7476160A>G	uc002gho.1	+	9	1326	c.1A>G	c.(1-3)ATG>GTG	p.M1V	EIF4A1_uc002ghr.1_Missense_Mutation_p.M1V|EIF4A1_uc002ghq.1_Missense_Mutation_p.M1V|EIF4A1_uc002ghp.1_Missense_Mutation_p.M1V|SNORA48_uc002ghs.1_5'Flank	NM_001416	NP_001407	P60842	IF4A1_HUMAN	eukaryotic translation initiation factor 4A	1					nuclear-transcribed mRNA poly(A) tail shortening	cytosol|eukaryotic translation initiation factor 4F complex	ATP binding|ATP-dependent helicase activity|mRNA binding|protein binding|RNA cap binding|translation initiation factor activity			ovary(1)	1						TCTAAGGATCATGTCTGCGAG	0.627000													25	132					0	0	0.000227799	0	0
WRAP53	55135	broad.mit.edu	37	17	7605081	7605081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:7605081G>A	uc010vuh.1	+	7	1084	c.929G>A	c.(928-930)CGA>CAA	p.R310Q	WRAP53_uc010vui.1_Missense_Mutation_p.R310Q|WRAP53_uc002gip.2_Missense_Mutation_p.R310Q|WRAP53_uc002gir.2_Missense_Mutation_p.R310Q|WRAP53_uc002giq.2_RNA|WRAP53_uc010cnl.2_Missense_Mutation_p.R277Q|WRAP53_uc010vuj.1_Missense_Mutation_p.R91Q	NM_001143990	NP_001137462	Q9BUR4	WAP53_HUMAN	WD repeat domain 79 isoform 2	310	WD 3.				positive regulation of telomerase activity|telomere formation via telomerase	Cajal body|cytoplasm|telomerase holoenzyme complex	protein binding|RNA binding				0						CGGCCTGGCCGAGACTGCGAG	0.627000													5	21					0	0	3.59834e-05	0	0
C17orf68	80169	broad.mit.edu	37	17	8141515	8141515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:8141515G>A	uc002gkq.3	-	4	540	c.481C>T	c.(481-483)CCC>TCC	p.P161S	C17orf68_uc010cnv.2_RNA	NM_025099	NP_079375	Q2NKJ3	CTC1_HUMAN	alpha accessory factor 132	161					positive regulation of DNA replication|telomere maintenance	Stn1-Ten1 complex	protein binding|single-stranded DNA binding				0						CTCCAACGGGGGAACAGAAAA	0.527000													4	37					0	0	0.000602214	0	0
MYH10	4628	broad.mit.edu	37	17	8452063	8452063	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:8452063G>A	uc002gll.2	-	9	1028	c.932C>T	c.(931-933)TCC>TTC	p.S311F	MYH10_uc002glm.2_Missense_Mutation_p.S321F|MYH10_uc010cnx.2_Missense_Mutation_p.S320F|MYH10_uc010cny.1_RNA	NM_005964	NP_005955	P35580	MYH10_HUMAN	myosin, heavy polypeptide 10, non-muscle	311	Myosin head-like.				actin filament-based movement|axon guidance|cytokinesis after mitosis|regulation of cell shape	cell cortex|cleavage furrow|midbody|myosin complex|stress fiber	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(2)	2						ATAGCCATTGGAGAGAAACCT	0.373000													29	177					0	0	0.000409698	0	0
MYH4	4622	broad.mit.edu	37	17	10357112	10357112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:10357112C>T	uc002gmn.2	-	23	2893	c.2782G>A	c.(2782-2784)GAA>AAA	p.E928K	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	928	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TCAGCTCTTTCAGTTACCTCT	0.438000													47	282					0	0	0.000781405	0	0
MYH1	4619	broad.mit.edu	37	17	10401063	10401063	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:10401063C>T	uc002gmo.2	-	31	4447	c.4353G>A	c.(4351-4353)AGG>AGA	p.R1451R	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1451	Potential.			R -> T (in Ref. 4; CAA27380).		muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TATCAAAGTTCCTTTGCTTTT	0.443000													13	70					0	0	0.000308642	0	0
MYH1	4619	broad.mit.edu	37	17	10408207	10408207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:10408207C>T	uc002gmo.2	-	22	2705	c.2611G>A	c.(2611-2613)GAG>AAG	p.E871K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	871	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CTTTTTGCCTCGGTCTTAGCC	0.423000													19	95					0	0	0.000175454	0	0
DNAH9	1770	broad.mit.edu	37	17	11701013	11701013	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:11701013G>A	uc002gne.2	+	43	8391	c.8323G>A	c.(8323-8325)GAA>AAA	p.E2775K	DNAH9_uc010coo.2_Missense_Mutation_p.E2069K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	2775					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACAGTCTTGGGAACTTTTGAC	0.493000													11	42					0	0	0.000673444	0	0
SLC5A10	125206	broad.mit.edu	37	17	18862036	18862036	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:18862036C>T	uc002guu.1	+	2	194	c.153C>T	c.(151-153)TTC>TTT	p.F51F	SLC5A10_uc002gur.1_5'UTR|SLC5A10_uc002gut.1_Silent_p.F51F|SLC5A10_uc002guv.1_Silent_p.F51F|SLC5A10_uc010vyl.1_Silent_p.F51F	NM_001042450	NP_001035915	A0PJK1	SC5AA_HUMAN	solute carrier family 5 (sodium/glucose	51	Cytoplasmic (Potential).				sodium ion transport|transmembrane transport	integral to membrane	transporter activity			ovary(1)	1						ATGGCTACTTCCTGGCAGGCC	0.478000													8	59					0	0	0.00010058	0	0
MAP2K3	5606	broad.mit.edu	37	17	21201765	21201765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:21201765G>A	uc002gys.2	+	2	355	c.90G>A	c.(88-90)ATG>ATA	p.M30I	MAP2K3_uc002gyt.2_Missense_Mutation_p.M1I|MAP2K3_uc002gyu.2_Missense_Mutation_p.M1I	NM_145109	NP_659731	P46734	MP2K3_HUMAN	mitogen-activated protein kinase kinase 3	30					activation of MAPK activity|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of transcription, DNA-dependent|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|nucleoplasm	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0				COAD - Colon adenocarcinoma(3;0.0131)|Colorectal(15;0.0553)		TATCCTGCATGTCCAAGCCAC	0.552000													16	170					0	0	0.00074312	0	0
LRRC37B	114659	broad.mit.edu	37	17	30374874	30374874	+	Silent	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:30374874G>T	uc002hgu.2	+	9	2348	c.2337G>T	c.(2335-2337)TCG>TCT	p.S779S	LRRC37B_uc010wbx.1_Silent_p.S697S|LRRC37B_uc010csu.2_Silent_p.S728S	NM_052888	NP_443120	Q96QE4	LR37B_HUMAN	leucine rich repeat containing 37B precursor	779	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2		Myeloproliferative disorder(56;0.0255)|all_hematologic(16;0.111)|Ovarian(249;0.182)|Breast(31;0.244)				CTATTGAGTCGGAGGCGCCCT	0.512000													6	179					0.000274275	0.00404496	0.000274275	1	0
SLFN11	91607	broad.mit.edu	37	17	33690204	33690204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:33690204G>A	uc010ctp.2	-	4	1065	c.623C>T	c.(622-624)CCT>CTT	p.P208L	SLFN11_uc010ctq.2_Missense_Mutation_p.P208L|SLFN11_uc002hjh.3_Missense_Mutation_p.P208L|SLFN11_uc002hjg.3_Missense_Mutation_p.P208L|SLFN11_uc010ctr.2_Missense_Mutation_p.P208L	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	208						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGAGACTCAGGAAAAGGCAG	0.408000													23	94					0	0	0.000375601	0	0
PIGW	284098	broad.mit.edu	37	17	34894104	34894104	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:34894104T>C	uc002hmy.1	+	2	1197	c.1154T>C	c.(1153-1155)CTT>CCT	p.L385P	MYO19_uc010wcy.1_5'Flank|MYO19_uc002hmx.2_5'Flank|PIGW_uc002hmz.1_Missense_Mutation_p.L385P	NM_178517	NP_848612	Q7Z7B1	PIGW_HUMAN	phosphatidylinositol glycan, class W	385	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	O-acyltransferase activity				0		Breast(25;0.00957)|Ovarian(249;0.17)	Kidney(155;0.104)	UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CTGATCCTTCTTAGTAGTTTA	0.343000													12	69					0	0	0.000978159	0	0
CNTD1	124817	broad.mit.edu	37	17	40955691	40955691	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:40955691C>T	uc002ibm.3	+	2	455	c.223C>T	c.(223-225)CAG>TAG	p.Q75*	CNTD1_uc010wha.1_5'UTR	NM_173478	NP_775749	Q8N815	CNTD1_HUMAN	cyclin N-terminal domain containing 1	75	Cyclin N-terminal.									central_nervous_system(1)	1		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		TGTGAGCTACCAGGCTGTAGA	0.418000													33	154					0	0	0.000319135	0	0
Unknown	0	broad.mit.edu	37	17	45105705	45105705	+	RNA	SNP	A	G	G	rs147936028	by1000genomes	TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:45105705A>G	uc010wki.1	+	5		c.1307A>G								Homo sapiens cDNA FLJ42521 fis, clone BRACE3000973.																		GCCTGGCACGAAATGCAGTTT	0.303000													6	379					0	0	3.59834e-05	0	0
CDC27	996	broad.mit.edu	37	17	45201273	45201273	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:45201273G>A	uc002ild.3	-	17	2341	c.2214C>T	c.(2212-2214)CTC>CTT	p.L738L	CDC27_uc002ile.3_Silent_p.L744L|CDC27_uc002ilf.3_Silent_p.L737L|CDC27_uc010wkp.1_Silent_p.L677L|CDC27_uc010wkq.1_RNA	NM_001256	NP_001247	P30260	CDC27_HUMAN	cell division cycle protein 27 isoform 2	738	TPR 9.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase/anaphase transition|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|centrosome|cytosol|nucleoplasm|spindle microtubule	protein phosphatase binding			lung(2)|breast(2)|ovary(1)	5						AGAAGTAAACGAGGGATTCTT	0.313000													14	95					0	0	0.000422831	0	0
HOXB9	3219	broad.mit.edu	37	17	46700460	46700460	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:46700460G>A	uc002inx.2	-	2	759	c.555C>T	c.(553-555)TCC>TCT	p.S185S		NM_024017	NP_076922	P17482	HXB9_HUMAN	homeobox B9	185	Homeobox.				canonical Wnt receptor signaling pathway|cell chemotaxis	mitochondrion|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCTTTTTCCGGGAAGAGCGAG	0.547000													11	99					0	0	0.000151284	0	0
HOXB9	3219	broad.mit.edu	37	17	46700464	46700464	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:46700464G>C	uc002inx.2	-	2	755	c.551C>G	c.(550-552)TCT>TGT	p.S184C		NM_024017	NP_076922	P17482	HXB9_HUMAN	homeobox B9	184					canonical Wnt receptor signaling pathway|cell chemotaxis	mitochondrion|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						TTTCCGGGAAGAGCGAGCGTG	0.547000													10	98					0	0	0.00010058	0	0
ITGA3	3675	broad.mit.edu	37	17	48153710	48153710	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:48153710C>T	uc010dbl.2	+	13	2159	c.1695C>T	c.(1693-1695)CTC>CTT	p.L565L	ITGA3_uc010dbm.2_Silent_p.L565L	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	565	Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						GTGACAAACTCCGCCCCATCA	0.637000													10	91					0	0	0.000673444	0	0
COL1A1	1277	broad.mit.edu	37	17	48271394	48271395	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:48271394_48271395GG>AA	uc002iqm.2	-	25	1802_1803	c.1676_1677CC>TT	c.(1675-1677)GCC>GTT	p.A559V		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	559	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	CATCTTGACCGGCGGGACCCTA	0.619000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						9	58					0	0	6.4e-05	0	0
ANKFN1	162282	broad.mit.edu	37	17	54431374	54431374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:54431374C>T	uc002iun.1	+	5	612	c.577C>T	c.(577-579)CTT>TTT	p.L193F		NM_153228	NP_694960	Q8N957	ANKF1_HUMAN	ankyrin-repeat and fibronectin type III domain	193	ANK 2.									large_intestine(1)|ovary(1)	2						TGCAAGGATTCTTCTGAGGAC	0.468000													8	51					0	0	0.000673444	0	0
ACE	1636	broad.mit.edu	37	17	61573825	61573825	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:61573825C>T	uc002jau.1	+	23	3473	c.3451C>T	c.(3451-3453)CCC>TCC	p.P1151S	ACE_uc002jav.1_Missense_Mutation_p.P577S|ACE_uc010ddv.1_Missense_Mutation_p.P378S|ACE_uc010wpj.1_Intron|ACE_uc002jaw.1_RNA|ACE_uc010wpk.1_Intron	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	1151	Extracellular (Potential).|Peptidase M2 2.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	CCACACGGGCCCCCTGCACAA	0.647000													13	50					0	0	0.000151284	0	0
APOH	350	broad.mit.edu	37	17	64219823	64219823	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:64219823G>A	uc002jfn.3	-	4	467	c.408C>T	c.(406-408)GTC>GTT	p.V136V		NM_000042	NP_000033	P02749	APOH_HUMAN	apolipoprotein H precursor	136	Sushi 2.				blood coagulation, intrinsic pathway|negative regulation of angiogenesis|negative regulation of blood coagulation|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|negative regulation of fibrinolysis|negative regulation of myeloid cell apoptosis|negative regulation of smooth muscle cell apoptosis|plasminogen activation|positive regulation of lipoprotein lipase activity|triglyceride metabolic process|triglyceride transport	cell surface|chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	eukaryotic cell surface binding|glycoprotein binding|heparin binding|lipoprotein lipase activator activity|phospholipid binding				0			BRCA - Breast invasive adenocarcinoma(6;9.74e-08)			TACGAGCACAGACAGGAAGCT	0.294000													12	76					0	0	0.000219431	0	0
CACNG4	27092	broad.mit.edu	37	17	65021058	65021058	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:65021058G>A	uc002jft.1	+	3	402	c.387G>A	c.(385-387)AGG>AGA	p.R129R		NM_014405	NP_055220	Q9UBN1	CCG4_HUMAN	voltage-dependent calcium channel gamma-4	129	Cytoplasmic (Potential).				membrane depolarization|regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|endocytic vesicle membrane	voltage-gated calcium channel activity			central_nervous_system(1)	1	all_cancers(12;9.86e-11)		BRCA - Breast invasive adenocarcinoma(6;1.35e-07)			GTGCTGGCAGGATCTACAGCC	0.687000													10	64					0	0	0.000673444	0	0
ABCA8	10351	broad.mit.edu	37	17	66937058	66937058	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:66937058G>A	uc002jhp.2	-	3	321	c.142C>T	c.(142-144)CCT>TCT	p.P48S	ABCA8_uc002jhq.2_Missense_Mutation_p.P48S|ABCA8_uc010wqq.1_Missense_Mutation_p.P48S|ABCA8_uc010wqr.1_5'UTR|ABCA8_uc002jhr.2_Missense_Mutation_p.P48S|ABCA8_uc002jhs.2_Missense_Mutation_p.P48S|ABCA8_uc002jht.2_Missense_Mutation_p.P48S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	48	Helical; (Potential).					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TGACTATGAGGATATATATAC	0.323000													8	50					0	0	0.000673444	0	0
EVPL	2125	broad.mit.edu	37	17	74004938	74004938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:74004938C>T	uc002jqi.2	-	22	4576	c.4348G>A	c.(4348-4350)GAG>AAG	p.E1450K	EVPL_uc010wss.1_Missense_Mutation_p.E1472K|EVPL_uc010wst.1_Missense_Mutation_p.E920K	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1450	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGCCGCTTCTCGAGCTCCTGG	0.637000													18	98					0	0	0.000229342	0	0
BAIAP2	10458	broad.mit.edu	37	17	79060261	79060261	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:79060261C>T	uc002jzg.2	+	6	478	c.370C>T	c.(370-372)CAG>TAG	p.Q124*	BAIAP2_uc002jyz.3_Nonsense_Mutation_p.Q124*|BAIAP2_uc002jza.2_Nonsense_Mutation_p.Q124*|BAIAP2_uc002jzc.2_Nonsense_Mutation_p.Q124*|BAIAP2_uc002jzb.2_5'UTR|BAIAP2_uc002jzd.2_Nonsense_Mutation_p.Q124*|BAIAP2_uc002jzf.2_Nonsense_Mutation_p.Q124*|BAIAP2_uc002jze.2_Nonsense_Mutation_p.Q157*|BAIAP2_uc010wuh.1_Nonsense_Mutation_p.Q46*|BAIAP2_uc002jzh.2_Nonsense_Mutation_p.Q125*	NM_017451	NP_059345	Q9UQB8	BAIP2_HUMAN	BAI1-associated protein 2 isoform 2	124	IMD.				axonogenesis|filopodium assembly|insulin receptor signaling pathway|regulation of actin cytoskeleton organization|response to bacterium	cell junction|cytoskeleton|cytosol|filopodium|nucleus|ruffle	cytoskeletal adaptor activity|proline-rich region binding|protein C-terminus binding|SH3 domain binding				0	all_neural(118;0.101)		BRCA - Breast invasive adenocarcinoma(99;0.0228)|OV - Ovarian serous cystadenocarcinoma(97;0.0524)			GAAGAAATACCAGACTGAGCA	0.532000													13	103					0	0	0.00010058	0	0
AZI1	22994	broad.mit.edu	37	17	79180936	79180936	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr17:79180936A>T	uc002jzp.1	-	4	576	c.376T>A	c.(376-378)TGG>AGG	p.W126R	AZI1_uc002jzn.1_Missense_Mutation_p.W126R|AZI1_uc002jzo.1_Missense_Mutation_p.W126R|AZI1_uc010wum.1_Missense_Mutation_p.W126R	NM_014984	NP_055799	Q9UPN4	AZI1_HUMAN	5-azacytidine induced 1 isoform a	126					cell differentiation|G2/M transition of mitotic cell cycle|multicellular organismal development|spermatogenesis	centrosome|cytosol|intracellular membrane-bounded organelle				central_nervous_system(2)|large_intestine(1)|ovary(1)	4	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			AGGACGTTCCAGGTGGCTCCC	0.592000													7	29					0	0	8.12818e-05	0	0
LAMA1	284217	broad.mit.edu	37	18	6977880	6977880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:6977880G>A	uc002knm.2	-	44	6285	c.6191C>T	c.(6190-6192)ACT>ATT	p.T2064I	LAMA1_uc010wzj.1_Missense_Mutation_p.T1540I	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	2064	Domain II and I.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	AGCCAACAGAGCTAACAAATA	0.408000													7	31					0	0	8.12818e-05	0	0
ANKRD30B	374860	broad.mit.edu	37	18	14852064	14852064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:14852064G>A	uc010dlo.2	+	36	3944	c.3764G>A	c.(3763-3765)AGA>AAA	p.R1255K	ANKRD30B_uc010xal.1_Missense_Mutation_p.R397K	NM_001145029	NP_001138501	Q9BXX2	AN30B_HUMAN	ankyrin repeat domain 30B	1340										ovary(1)|skin(1)	2						GATGATCTAAGAGAAAATGCA	0.348000													4	15					0	0	0.00024832	0	0
MIB1	57534	broad.mit.edu	37	18	19359612	19359612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:19359612C>T	uc002ktq.2	+	6	874	c.874C>T	c.(874-876)CAT>TAT	p.H292Y	MIB1_uc002ktp.2_5'UTR	NM_020774	NP_065825	Q86YT6	MIB1_HUMAN	mindbomb homolog 1	292					Notch signaling pathway	centrosome|nuclear membrane|plasma membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(4)	4			STAD - Stomach adenocarcinoma(5;0.212)			TGATGAAGATCATGACATTGT	0.368000													29	178					0	0	0.000227799	0	0
NPC1	4864	broad.mit.edu	37	18	21121366	21121367	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:21121366_21121367GG>AA	uc002kum.3	-	15	2550_2551	c.2276_2277CC>TT	c.(2275-2277)ACC>ATT	p.T759I	NPC1_uc010xaz.1_Missense_Mutation_p.T492I|NPC1_uc010xba.1_Missense_Mutation_p.T604I	NM_000271	NP_000262	O15118	NPC1_HUMAN	Niemann-Pick disease, type C1 precursor	759	SSD.				autophagy|bile acid metabolic process|cholesterol efflux|cholesterol homeostasis|lysosomal transport	endoplasmic reticulum|integral to plasma membrane|late endosome membrane|lysosomal membrane|nuclear envelope|perinuclear region of cytoplasm	hedgehog receptor activity|protein binding|sterol transporter activity			ovary(2)	2	all_cancers(21;0.000106)|all_epithelial(16;6.57e-07)|Lung NSC(20;0.00166)|all_lung(20;0.00536)|Colorectal(14;0.0202)|Ovarian(20;0.127)					AGAGAGAGAAGGTGTGCACGGC	0.510000													16	29					0	0	6.4e-05	0	0
DSG4	147409	broad.mit.edu	37	18	28993088	28993088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:28993088C>T	uc002kwq.2	+	16	2788	c.2653C>T	c.(2653-2655)CCC>TCC	p.P885S	DSG4_uc002kwr.2_Missense_Mutation_p.P904S	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	885	Cytoplasmic (Potential).|Desmoglein repeat 1.				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AGGATTGACTCCCTCAGAAGT	0.428000													16	80					0	0	0.000422831	0	0
WBP11P1	441818	broad.mit.edu	37	18	30092272	30092272	+	RNA	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:30092272G>A	uc010dmc.2	+	1		c.647G>A				NR_003558				Homo sapiens cDNA clone IMAGE:5265376, partial cds.												0						TTTGATCCAGGAAATTCCACT	0.483000													5	17					0	0	0.000602214	0	0
TCEB3B	51224	broad.mit.edu	37	18	44560016	44560016	+	Silent	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:44560016A>G	uc002lcr.1	-	1	1973	c.1620T>C	c.(1618-1620)AAT>AAC	p.N540N	KATNAL2_uc010dnq.1_Intron|KATNAL2_uc002lco.2_Intron|KATNAL2_uc002lcp.3_Intron	NM_016427	NP_057511	Q8IYF1	ELOA2_HUMAN	elongin A2	540	Activation domain (By similarity).				regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter	integral to membrane|nucleus	DNA binding			ovary(2)|large_intestine(1)|pancreas(1)	4						GGGCGTCCGGATTGTTTCTAA	0.602000													8	75					0	0	0.000157383	0	0
C18orf26	284254	broad.mit.edu	37	18	52265273	52265273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:52265273C>T	uc002lfq.1	+	3	576	c.530C>T	c.(529-531)TCA>TTA	p.S177L	C18orf26_uc002lfp.1_Missense_Mutation_p.S125L	NM_173629	NP_775900	Q8N1N2	CR026_HUMAN	hypothetical protein LOC284254	177	Thr-rich.					integral to membrane					0				Colorectal(16;0.0193)|READ - Rectum adenocarcinoma(59;0.178)		ACCACCACTTCAACTGTACCT	0.468000													11	59					0	0	0.000978159	0	0
CDH20	28316	broad.mit.edu	37	18	59221488	59221488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:59221488G>A	uc010dps.1	+	11	1978	c.1966G>A	c.(1966-1968)GAA>AAA	p.E656K	CDH20_uc002lif.2_Missense_Mutation_p.E650K	NM_031891	NP_114097	Q9HBT6	CAD20_HUMAN	cadherin 20, type 2 preproprotein	656	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(3)|ovary(1)|pancreas(1)	5		Colorectal(73;0.186)				CGACGACGAGGAAAACATCCA	0.587000													22	93					0	0	0.00106085	0	0
SERPINB7	8710	broad.mit.edu	37	18	61449741	61449741	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:61449741C>T	uc002ljl.2	+	2	231	c.135C>T	c.(133-135)GGC>GGT	p.G45G	SERPINB7_uc002ljm.2_Silent_p.G45G|SERPINB7_uc010xet.1_Silent_p.G45G|SERPINB7_uc010dqg.2_Silent_p.G45G	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	45					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				TCCGCTTGGGCGCTCAAGATG	0.478000													16	89					0	0	0.000958276	0	0
CNDP1	84735	broad.mit.edu	37	18	72228123	72228123	+	Silent	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:72228123C>G	uc002llq.2	+	4	547	c.336C>G	c.(334-336)CCC>CCG	p.P112P	uc002llr.2_5'Flank	NM_032649	NP_116038	Q96KN2	CNDP1_HUMAN	carnosinase 1 precursor	112					proteolysis	extracellular region	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity|tripeptidase activity				0		Esophageal squamous(42;0.129)|Prostate(75;0.157)|Melanoma(33;0.211)		BRCA - Breast invasive adenocarcinoma(31;0.109)		CAATACCTCCCATCATCCTGG	0.532000													4	170					0	0	0.00024832	0	0
C18orf62	284274	broad.mit.edu	37	18	73130777	73130777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr18:73130777G>A	uc002lma.1	-	2	295	c.224C>T	c.(223-225)TCT>TTT	p.S75F	C18orf62_uc010dqw.1_Intron|C18orf62_uc002lmb.1_RNA	NM_001037331	NP_001032408	Q3B7S5	CR062_HUMAN	hypothetical protein LOC284274	75						integral to membrane					0		Esophageal squamous(42;0.131)|Prostate(75;0.155)		OV - Ovarian serous cystadenocarcinoma(15;6.21e-06)		ccagtcttcagaaaccccttg	0.124000													19	133					0	0	0.000720815	0	0
CELF5	60680	broad.mit.edu	37	19	3275934	3275934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:3275934G>A	uc002lxm.2	+	4	512	c.475G>A	c.(475-477)GTC>ATC	p.V159I	CELF5_uc002lxl.1_Missense_Mutation_p.V159I|CELF5_uc010dtj.1_Missense_Mutation_p.V159I|CELF5_uc010xhg.1_Missense_Mutation_p.V45I|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	159	RRM 2.				mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						GCCCTTCGGGGTCATTGACGA	0.507000													4	17					0	0	3.59834e-05	0	0
SLC25A41	284427	broad.mit.edu	37	19	6432137	6432137	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:6432137G>A	uc010dus.2	-	2	372	c.286C>T	c.(286-288)CTA>TTA	p.L96L	SLC25A41_uc010dut.2_5'UTR	NM_173637	NP_775908	Q8N5S1	S2541_HUMAN	solute carrier family 25, member 41	96	Solcar 1.|Helical; Name=1; (Potential).				transmembrane transport	integral to membrane|mitochondrial inner membrane	binding				0						CCTGAGAGTAGAAACTTCCAC	0.612000													10	34					0	0	0.000442599	0	0
MUC16	94025	broad.mit.edu	37	19	9059445	9059445	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:9059445G>T	uc002mkp.2	-	3	28205	c.28001C>A	c.(28000-28002)CCA>CAA	p.P9334Q		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	9336	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCAGGGCCTGGGATGGATGT	0.493000													19	90					3.62473e-10	5.44031e-09	0.000229342	1	0
MUC16	94025	broad.mit.edu	37	19	9065737	9065737	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:9065737G>A	uc002mkp.2	-	3	21913	c.21709C>T	c.(21709-21711)CAG>TAG	p.Q7237*		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7239	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GACTCTTTCTGAATTCTGCTA	0.468000													34	168					0	0	0.000491102	0	0
MUC16	94025	broad.mit.edu	37	19	9077420	9077420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:9077420C>T	uc002mkp.2	-	3	10230	c.10026G>A	c.(10024-10026)ATG>ATA	p.M3342I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	3343	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TAGAGAATTCCATTCCAGTTG	0.502000													27	96					0	0	0.000878237	0	0
MUC16	94025	broad.mit.edu	37	19	9086816	9086816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:9086816C>T	uc002mkp.2	-	1	5203	c.4999G>A	c.(4999-5001)GAA>AAA	p.E1667K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1667	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTTCTTCTTTCCAGTGCCATG	0.512000													18	53					0	0	0.00074312	0	0
TSPAN16	26526	broad.mit.edu	37	19	11406992	11406992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:11406992C>T	uc002mqv.1	+	1	169	c.19C>T	c.(19-21)CCG>TCG	p.P7S	TSPAN16_uc002mqu.1_RNA	NM_012466	NP_036598	Q9UKR8	TSN16_HUMAN	transmembrane 4 superfamily member 16	7	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						AATCCACACTCCGTATTCTTC	0.473000													12	70					0	0	0.00010058	0	0
HOOK2	29911	broad.mit.edu	37	19	12874530	12874530	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:12874530G>A	uc002muy.2	-	21	2061	c.1890C>T	c.(1888-1890)TCC>TCT	p.S630S	HOOK2_uc010xmq.1_Silent_p.S35S|HOOK2_uc002muz.2_Silent_p.S628S	NM_013312	NP_037444	Q96ED9	HOOK2_HUMAN	hook homolog 2 isoform 1	630	Sufficient for interaction with CEP110.|Required for localization to the centrosome and induction of aggresome formation.				early endosome to late endosome transport|endocytosis|endosome organization|endosome to lysosome transport|lysosome organization|microtubule cytoskeleton organization|protein transport	centrosome|FHF complex|microtubule	identical protein binding|microtubule binding			ovary(1)|breast(1)|skin(1)	3						GTGTCCTCAGGGAATGGAGTT	0.602000													8	38					0	0	0.000442599	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091490	17091490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:17091490C>T	uc002nfb.2	-	14	1575	c.1543G>A	c.(1543-1545)GAA>AAA	p.E515K		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	468						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TAGGCTTCTTCCCCAACCTAT	0.572000													11	47					0	0	0.00010058	0	0
PGLS	25796	broad.mit.edu	37	19	17628187	17628187	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:17628187C>T	uc002ngw.2	+	3	537	c.487C>T	c.(487-489)CCC>TCC	p.P163S		NM_012088	NP_036220	O95336	6PGL_HUMAN	6-phosphogluconolactonase	163						cytosol	6-phosphogluconolactonase activity				0						CCCAGACCACCCCCTCCTACA	0.637000													17	70					0	0	0.000566183	0	0
CILP2	148113	broad.mit.edu	37	19	19655900	19655900	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:19655900A>T	uc002nmv.3	+	8	2631	c.2546A>T	c.(2545-2547)CAC>CTC	p.H849L	CILP2_uc002nmw.3_Missense_Mutation_p.H855L	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	849						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						CGGACGGACCACGACGATCCC	0.706000													4	29					0	0	0.000602214	0	0
ZNF14	7561	broad.mit.edu	37	19	19822283	19822283	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:19822283G>A	uc002nnk.1	-	4	1961	c.1807C>T	c.(1807-1809)CGA>TGA	p.R603*		NM_021030	NP_066358	P17017	ZNF14_HUMAN	zinc finger protein 14	603	C2H2-type 18.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Renal(1328;0.0474)				TCATGAATTCGAACAGAACTT	0.408000													16	55					0	0	0.000566183	0	0
LOC284441	284441	broad.mit.edu	37	19	20369236	20369236	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:20369236G>A	uc002nov.2	+	1	780	c.29G>A	c.(28-30)CGA>CAA	p.R10Q		NR_003128				SubName: Full=cDNA FLJ51655, highly similar to Actin-like protein 2;												0						AGTGAATTACGATCAATGTTA	0.353000													11	97					0	0	0.000151284	0	0
ZNF98	148198	broad.mit.edu	37	19	22574608	22574608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:22574608G>A	uc002nqt.2	-	4	1551	c.1429C>T	c.(1429-1431)CTT>TTT	p.L477F		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	477	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TGTTTAGAAAGAGTTGAGGAC	0.368000													7	52					0	0	0.000442599	0	0
ZNF536	9745	broad.mit.edu	37	19	31025765	31025765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:31025765G>A	uc002nsu.1	+	3	2320	c.2182G>A	c.(2182-2184)GAG>AAG	p.E728K	ZNF536_uc010edd.1_Missense_Mutation_p.E728K	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	728					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CATTGGCGAGGAGGCTGGGAG	0.552000													24	156					0	0	0.00047179	0	0
TSHZ3	57616	broad.mit.edu	37	19	31768064	31768064	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:31768064G>A	uc002nsy.3	-	2	2700	c.2635C>T	c.(2635-2637)CTG>TTG	p.L879L		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	879					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					GCCTCCTCCAGAGTGGCCCCG	0.577000													13	34					0	0	0.00010058	0	0
DPY19L3	147991	broad.mit.edu	37	19	32954296	32954296	+	Silent	SNP	G	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:32954296G>C	uc002ntg.2	+	13	1523	c.1347G>C	c.(1345-1347)GTG>GTC	p.V449V	DPY19L3_uc002nth.1_Silent_p.V449V|DPY19L3_uc002nti.1_RNA	NM_207325	NP_997208	Q6ZPD9	D19L3_HUMAN	dpy-19-like 3	449						integral to membrane				ovary(4)	4	Esophageal squamous(110;0.162)					AACAATCCGTGGGTAAAATGG	0.343000													9	55					0	0	0.000274275	0	0
ZNF570	148268	broad.mit.edu	37	19	37975975	37975975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:37975975C>T	uc002ogk.1	+	5	1980	c.1451C>T	c.(1450-1452)TCC>TTC	p.S484F	ZNF570_uc010efl.1_Missense_Mutation_p.S540F|ZNF570_uc010xtr.1_Missense_Mutation_p.S281F	NM_144694	NP_653295	Q96NI8	ZN570_HUMAN	zinc finger protein 570	484	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TACTGTGGATCCCTTGCCCAA	0.433000													10	68					0	0	0.000442599	0	0
TMEM145	284339	broad.mit.edu	37	19	42819392	42819392	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:42819392C>T	uc002otk.1	+	7	610	c.558C>T	c.(556-558)TTC>TTT	p.F186F		NM_173633	NP_775904	Q8NBT3	TM145_HUMAN	transmembrane protein 145	186	Helical; (Potential).					integral to membrane					0		Prostate(69;0.00682)				tcatcttcttcctctcttGTT	0.453000													9	56					0	0	0.000442599	0	0
PSG3	5671	broad.mit.edu	37	19	43243087	43243087	+	Silent	SNP	C	T	T	rs150813172		TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:43243087C>T	uc002oue.2	-	2	351	c.219G>A	c.(217-219)AAG>AAA	p.K73K	PSG3_uc002ouf.2_RNA|PSG1_uc002oug.1_Intron|PSG3_uc010eil.2_Silent_p.K95K	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	73	Ig-like V-type.				defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				GGTAGAGGTCCTTCATTTGCC	0.438000													43	191					0	0	0.000319135	0	0
ZNF225	7768	broad.mit.edu	37	19	44636489	44636489	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:44636489G>A	uc002oyj.1	+	5	1965	c.1722G>A	c.(1720-1722)GGG>GGA	p.G574G	ZNF225_uc010eje.1_Silent_p.G491G|ZNF225_uc010ejf.1_Silent_p.G574G	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	574	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AAGAATGTGGGAAGAGCTTTA	0.428000													9	56					0	0	0.000978159	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49971807	49971808	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:49971807_49971808CC>TT	uc002pnt.2	+	15	2224_2225	c.2108_2109CC>TT	c.(2107-2109)GCC>GTT	p.A703V	ALDH16A1_uc010yar.1_Missense_Mutation_p.A652V|ALDH16A1_uc010yas.1_Missense_Mutation_p.A538V|ALDH16A1_uc010yat.1_Missense_Mutation_p.A540V	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	703							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		CCTCTGCTGGCCCTGGAGGTCT	0.658000													21	92					0	0	6.4e-05	0	0
MED25	81857	broad.mit.edu	37	19	50333986	50333986	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:50333986G>A	uc002ppw.1	+	9	996	c.943G>A	c.(943-945)GGA>AGA	p.G315R	MED25_uc010ybe.1_Missense_Mutation_p.G102R|MED25_uc002ppx.1_Missense_Mutation_p.G96R	NM_030973	NP_112235	Q71SY5	MED25_HUMAN	mediator complex subunit 25	315	Pro-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm				ovary(1)	1		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00822)|GBM - Glioblastoma multiforme(134;0.0122)		AGCTGCTCCCGGAGTGGGTCC	0.667000													6	32					0	0	8.12818e-05	0	0
SIGLEC11	114132	broad.mit.edu	37	19	50453290	50453290	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:50453290G>A	uc010ybh.1	-	11	2125	c.2034C>T	c.(2032-2034)CCC>CCT	p.P678P	SIGLEC11_uc010ybi.1_Silent_p.P582P	NM_052884	NP_443116	Q96RL6	SIG11_HUMAN	sialic acid binding Ig-like lectin 11 isoform 1	678	Cytoplasmic (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|central_nervous_system(2)|pancreas(1)	6		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00107)|OV - Ovarian serous cystadenocarcinoma(262;0.00517)		GGCCCCTCAGGGGCTGTCCTG	0.607000													5	27					0	0	0.000602214	0	0
MYH14	79784	broad.mit.edu	37	19	50774791	50774791	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:50774791C>T	uc002prr.1	+	23	3083	c.3036C>T	c.(3034-3036)TCC>TCT	p.S1012S	MYH14_uc010enu.1_Silent_p.S1053S|MYH14_uc002prq.1_Silent_p.S1020S	NM_024729	NP_079005	Q7Z406	MYH14_HUMAN	myosin, heavy chain 14 isoform 2	1012	Potential.				axon guidance|regulation of cell shape	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			central_nervous_system(1)	1		all_neural(266;0.0571)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00389)|GBM - Glioblastoma multiforme(134;0.0195)		ACCAGAATTCCAAGCTGAGCA	0.552000													3	9					0	0	0.00024832	0	0
MIR517B	574483	broad.mit.edu	37	19	54224374	54224374	+	RNA	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:54224374C>T	hsa-mir-517b|MI0003165	+			c.45C>T			MIR520G_hsa-mir-520g|MI0003166_5'Flank																	0						AAGAAAAGATCGTGCATCCCT	0.398000													24	83					0	0	0.00106085	0	0
KIR3DX1	90011	broad.mit.edu	37	19	55048179	55048179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:55048179C>T	uc010erm.2	+	1	59	c.47C>T	c.(46-48)TCA>TTA	p.S16L	KIR3DX1_uc010yfa.1_RNA|KIR3DX1_uc010yfb.1_RNA|KIR3DX1_uc010yfc.1_RNA|KIR3DX1_uc010yfd.1_RNA					Homo sapiens killer cell immunoglobulin-like receptor, three domains, X1, mRNA (cDNA clone IMAGE:4849085).											ovary(1)	1				GBM - Glioblastoma multiforme(193;0.099)		TCTGAAATCTCATTTGACCAG	0.512000											OREG0003665	type=REGULATORY REGION|Gene=BC033195|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	14	49					0	0	0.000422831	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55378106	55378106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:55378106G>A	uc002qhl.3	+	9	1351	c.1288G>A	c.(1288-1290)GAA>AAA	p.E430K	KIR3DL2_uc010esh.2_Missense_Mutation_p.E413K|KIR3DL2_uc002qho.3_Missense_Mutation_p.E430K			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	430	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		CGTGTACACGGAACTTCCAAA	0.527000													30	193					0	0	0.000692331	0	0
APOB	338	broad.mit.edu	37	2	21228379	21228380	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:21228379_21228380GG>TT	uc002red.2	-	26	11488_11489	c.11360_11361CC>AA	c.(11359-11361)CCC>CAA	p.P3787Q		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3787					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	ATTTTACCTCGGGGAGTGTTGG	0.396000													14	566					0	0	6.4e-05	0	0
NLRC4	58484	broad.mit.edu	37	2	32475631	32475632	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:32475631_32475632CC>TT	uc002roi.2	-	4	1547_1548	c.1301_1302GG>AA	c.(1300-1302)AGG>AAA	p.R434K	NLRC4_uc002roj.1_Missense_Mutation_p.R434K|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	434	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					TTGGCTTGAACCTTTGAGCTGT	0.460000													10	35					0	0	6.4e-05	0	0
THADA	63892	broad.mit.edu	37	2	43819106	43819106	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:43819106G>A	uc002rsw.3	-	3	508	c.156C>T	c.(154-156)ATC>ATT	p.I52I	THADA_uc002rsx.3_Silent_p.I52I|THADA_uc002rsy.3_RNA|THADA_uc002rsz.2_5'UTR|THADA_uc002rta.2_5'UTR|THADA_uc002rtb.1_Silent_p.I52I|THADA_uc002rtc.3_Silent_p.I52I|THADA_uc002rtd.2_Silent_p.I52I	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	52							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				TAATATAATGGATTTGTGACA	0.323000													39	216					0	0	0.00111076	0	0
BCL11A	53335	broad.mit.edu	37	2	60773118	60773118	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:60773118C>T	uc002sae.1	-	2	601	c.373G>A	c.(373-375)GAA>AAA	p.E125K	BCL11A_uc002sab.2_Missense_Mutation_p.E125K|BCL11A_uc002sac.2_Missense_Mutation_p.E125K|BCL11A_uc010ypi.1_5'UTR|BCL11A_uc010ypj.1_Missense_Mutation_p.E125K|BCL11A_uc002saf.1_Missense_Mutation_p.E125K|BCL11A_uc010fcg.2_Missense_Mutation_p.E125K	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	125	Required for nuclear body formation and for SUMO1 recruitment (By similarity).				negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			GCTATGTGTTCCTGTTTGGGG	0.443000			T	IGH@	B-CLL								69	290					0	0	0.000781405	0	0
DYSF	8291	broad.mit.edu	37	2	71801494	71801494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:71801494G>A	uc002sie.2	+	30	3717	c.3341G>A	c.(3340-3342)GGG>GAG	p.G1114E	DYSF_uc010feg.2_Missense_Mutation_p.G1145E|DYSF_uc010feh.2_Missense_Mutation_p.G1100E|DYSF_uc002sig.3_Missense_Mutation_p.G1100E|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.G1114E|DYSF_uc010fef.2_Missense_Mutation_p.G1131E|DYSF_uc010fei.2_Missense_Mutation_p.G1131E|DYSF_uc010fek.2_Missense_Mutation_p.G1132E|DYSF_uc010fej.2_Missense_Mutation_p.G1101E|DYSF_uc010fel.2_Missense_Mutation_p.G1101E|DYSF_uc010feo.2_Missense_Mutation_p.G1146E|DYSF_uc010fem.2_Missense_Mutation_p.G1115E|DYSF_uc010fen.2_Missense_Mutation_p.G1132E|DYSF_uc002sif.2_Missense_Mutation_p.G1115E|DYSF_uc010yqy.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1114	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GCCCTTGAGGGGGCCCTGGTA	0.642000													10	37					0	0	0.000442599	0	0
SULT1C3	442038	broad.mit.edu	37	2	108881316	108881316	+	Silent	SNP	C	T	T	rs150872787		TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:108881316C>T	uc010ywo.1	+	6	657	c.657C>T	c.(655-657)TTC>TTT	p.F219F		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	219	PAPS.					cytoplasm	alcohol sulfotransferase activity	p.F219F(1)		skin(1)	1						TACTGAAGTTCCTGGAAAAAG	0.403000													15	33					0	0	0.000308642	0	0
CYTIP	9595	broad.mit.edu	37	2	158300366	158300366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:158300366C>T	uc002tzj.1	-	1	239	c.167G>A	c.(166-168)CGA>CAA	p.R56Q	CYTIP_uc010zcl.1_Intron	NM_004288	NP_004279	O60759	CYTIP_HUMAN	cytohesin 1 interacting protein	56					regulation of cell adhesion	cell cortex|early endosome	protein binding			ovary(1)|kidney(1)|skin(1)	3						TACCTGCTTTCGTCCCCGAGG	0.448000													15	59					0	0	0.000566183	0	0
CCDC148	130940	broad.mit.edu	37	2	159028671	159028671	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:159028671T>A	uc002tzq.2	-	14	1993	c.1730A>T	c.(1729-1731)CAA>CTA	p.Q577L	CCDC148_uc002tzr.2_Missense_Mutation_p.Q425L|CCDC148_uc010foh.2_Missense_Mutation_p.Q290L	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	577										ovary(2)	2						TGGAGGTTTTTGAGGACTAAT	0.338000													16	70					0	0	0.000422831	0	0
SCN9A	6335	broad.mit.edu	37	2	167055757	167055757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:167055757C>T	uc010fpl.2	-	27	5700	c.5359G>A	c.(5359-5361)GAG>AAG	p.E1787K	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1798						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTAGAGAACTCTATAAACTGG	0.463000													21	86					0	0	0.000175454	0	0
LRP2	4036	broad.mit.edu	37	2	170076975	170076975	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:170076975A>C	uc002ues.2	-	34	5850	c.5637T>G	c.(5635-5637)GAT>GAG	p.D1879E		NM_004525	NP_004516	P98164	LRP2_HUMAN	low density lipoprotein-related protein 2	1879	Extracellular (Potential).|LDL-receptor class B 16.				hormone biosynthetic process|protein glycosylation|receptor-mediated endocytosis|vitamin D metabolic process	coated pit|integral to membrane|lysosome	calcium ion binding|receptor activity|SH3 domain binding			ovary(13)|skin(6)|central_nervous_system(4)|large_intestine(3)|kidney(2)|pancreas(1)	29				STAD - Stomach adenocarcinoma(1183;0.000766)|COAD - Colon adenocarcinoma(177;0.0101)	Gentamicin(DB00798)|Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Urokinase(DB00013)	CACGAGCAGGATCAACAGTTA	0.418000													9	41					0	0	0.000442599	0	0
TTN	7273	broad.mit.edu	37	2	179489236	179489236	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:179489236C>G	uc010zfg.1	-	191	37291	c.37067G>C	c.(37066-37068)TGT>TCT	p.C12356S	TTN_uc010zfh.1_Missense_Mutation_p.C6051S|TTN_uc010zfi.1_Missense_Mutation_p.C5984S|TTN_uc010zfj.1_Missense_Mutation_p.C5859S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13283							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTAGCATCACAAGTGTATGT	0.353000													16	94					0	0	0.000566183	0	0
TTN	7273	broad.mit.edu	37	2	179600567	179600567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:179600567G>A	uc010zfg.1	-	47	11098	c.10874C>T	c.(10873-10875)GCT>GTT	p.A3625V	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.A286V	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4552							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTGTTGGAAGCCTTACAAGA	0.403000													7	45					0	0	8.12818e-05	0	0
TTN	7273	broad.mit.edu	37	2	179604839	179604839	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:179604839C>T	uc010zfh.1	-	46	12832	c.12608G>A	c.(12607-12609)GGA>GAA	p.G4203E	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.G4136E|TTN_uc010zfj.1_Missense_Mutation_p.G4011E|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AAGGTCCCTTCCCTGTACCTC	0.468000													13	49					0	0	0.00010058	0	0
TTN	7273	broad.mit.edu	37	2	179613553	179613553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:179613553G>A	uc002unb.2	-	46	13798	c.13574C>T	c.(13573-13575)TCA>TTA	p.S4525L	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATGTTAGATGAATCTGATTC	0.323000													28	77					0	0	0.000184323	0	0
TTN	7273	broad.mit.edu	37	2	179615864	179615864	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:179615864C>T	uc002unb.2	-	46	11487	c.11263G>A	c.(11263-11265)GAT>AAT	p.D3755N	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	9599							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCAGCTAGATCAGACATAGAT	0.353000													20	55					0	0	0.000175454	0	0
PDE1A	5136	broad.mit.edu	37	2	183066287	183066287	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:183066287C>T	uc002uos.2	-	11	1137	c.1053_splice	c.e11-1	p.G351_splice	PDE1A_uc010zfp.1_Splice_Site_p.G247_splice|PDE1A_uc002uoq.1_Splice_Site_p.G351_splice|PDE1A_uc010zfq.1_Splice_Site_p.G351_splice|PDE1A_uc002uor.2_Splice_Site_p.G335_splice|PDE1A_uc002uou.2_Splice_Site_p.G317_splice	NM_001003683	NP_001003683	P54750	PDE1A_HUMAN	phosphodiesterase 1A isoform 2						activation of phospholipase C activity|nerve growth factor receptor signaling pathway|platelet activation	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(2)|ovary(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.061)			TCTGTCAATCCTGTCAAACCA	0.443000													13	68					0	0	0.000422831	0	0
ITGAV	3685	broad.mit.edu	37	2	187521043	187521043	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:187521043A>G	uc002upq.2	+	17	1910	c.1634A>G	c.(1633-1635)TAC>TGC	p.Y545C	ITGAV_uc010frs.2_Missense_Mutation_p.Y509C|ITGAV_uc010zfv.1_Missense_Mutation_p.Y499C	NM_002210	NP_002201	P06756	ITAV_HUMAN	integrin alpha-V isoform 1 precursor	545	Extracellular (Potential).				angiogenesis|axon guidance|blood coagulation|cell-matrix adhesion|entry of bacterium into host cell|entry of symbiont into host cell by promotion of host phagocytosis|entry of virus into host cell|ERK1 and ERK2 cascade|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|negative regulation of lipid storage|negative regulation of lipid transport|negative regulation of lipoprotein metabolic process|negative regulation of low-density lipoprotein particle receptor biosynthetic process|negative regulation of macrophage derived foam cell differentiation|positive regulation of cell adhesion|positive regulation of cell proliferation|regulation of apoptotic cell clearance	integrin complex	receptor activity|transforming growth factor beta binding			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0185)|Epithelial(96;0.072)|all cancers(119;0.189)	STAD - Stomach adenocarcinoma(3;0.106)|COAD - Colon adenocarcinoma(31;0.108)		CTGTTTCTCTACAGCAGGTCC	0.433000													5	120					0	0	8.12818e-05	0	0
DNAH7	56171	broad.mit.edu	37	2	196602645	196602645	+	Nonstop_Mutation	SNP	T	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:196602645T>G	uc002utj.3	-	65	12176	c.12075A>C	c.(12073-12075)TAA>TAC	p.*4025Y	DNAH7_uc002uti.3_Nonstop_Mutation_p.*508Y	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	4025					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TGTCTTCTGGTTATGAATTAA	0.373000													8	29					0	0	0.000673444	0	0
DNAH7	56171	broad.mit.edu	37	2	196602738	196602738	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:196602738C>T	uc002utj.3	-	65	12083	c.11982G>A	c.(11980-11982)ACG>ACA	p.T3994T	DNAH7_uc002uti.3_Silent_p.T477T	NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3994					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCACAAAATTCGTGGAATGGC	0.453000													11	38					0	0	0.000978159	0	0
ANKRD44	91526	broad.mit.edu	37	2	197964578	197964578	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:197964578C>T	uc002uuc.2	-	10	1229	c.1062G>A	c.(1060-1062)TTG>TTA	p.L354L	ANKRD44_uc002utz.3_Silent_p.L43L|ANKRD44_uc002uua.1_Silent_p.L329L|ANKRD44_uc002uub.2_Silent_p.L354L|ANKRD44_uc010zgw.1_Silent_p.L282L	NM_153697	NP_710181	Q8N8A2	ANR44_HUMAN	ankyrin repeat domain 44	354	ANK 11.						protein binding			ovary(4)|skin(1)	5			OV - Ovarian serous cystadenocarcinoma(117;0.246)			AGGTGTTAATCAAAAGCTCAT	0.433000													15	58					0	0	0.000422831	0	0
WDR12	55759	broad.mit.edu	37	2	203748421	203748422	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:203748421_203748422CC>AA	uc002uzl.2	-	11	1781_1782	c.1031_1032GG>TT	c.(1030-1032)TGG>TTT	p.W344F	WDR12_uc010ftt.2_Missense_Mutation_p.W344F	NM_018256	NP_060726	Q9GZL7	WDR12_HUMAN	WD repeat domain 12 protein	344	WD 6.|Sufficient for nucleolar localization.				cell proliferation|maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	nucleoplasm|PeBoW complex|preribosome, large subunit precursor	protein binding				0						CTGATGTCACCCAACCAGTATG	0.401000													10	365					0	0	6.4e-05	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170215	207170215	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:207170215C>T	uc002vbp.2	+	5	1213	c.963C>T	c.(961-963)ATC>ATT	p.I321I		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	321							nucleic acid binding|zinc ion binding			ovary(3)	3						ATAAAGGAATCTTTGAAGATA	0.373000													15	53					0	0	0.000308642	0	0
GLB1L	79411	broad.mit.edu	37	2	220104817	220104817	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:220104817C>T	uc002vkm.2	-	7	786	c.547_splice	c.e7-1	p.V183_splice	GLB1L_uc002vkk.2_Intron|GLB1L_uc010zkx.1_Intron|GLB1L_uc002vkn.2_Splice_Site_p.V183_splice	NM_024506	NP_078782	Q6UWU2	GLB1L_HUMAN	galactosidase, beta 1-like precursor						carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds				0		all_lung(227;1.19e-05)|Lung NSC(271;2.76e-05)|Medulloblastoma(418;0.0208)|Esophageal squamous(248;0.0559)		Epithelial(149;1.3e-11)|all cancers(144;2.07e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		CATTCTCCACCTGCCAGAGGG	0.537000													9	35					0	0	0.000978159	0	0
COL4A3	1285	broad.mit.edu	37	2	228148999	228148999	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:228148999G>A	uc002vom.1	+	34	2981	c.2819G>A	c.(2818-2820)GGA>GAA	p.G940E	COL4A3_uc002von.1_Missense_Mutation_p.G940E|COL4A3_uc002voo.1_Missense_Mutation_p.G940E|COL4A3_uc002vop.1_Missense_Mutation_p.G940E|uc002voq.1_Intron|uc002vor.1_Intron	NM_000091	NP_000082	Q01955	CO4A3_HUMAN	alpha 3 type IV collagen isoform 1 precursor	940	Triple-helical region.				activation of caspase activity|axon guidance|blood circulation|cell adhesion|cell proliferation|cell surface receptor linked signaling pathway|glomerular basement membrane development|induction of apoptosis|negative regulation of angiogenesis|negative regulation of cell proliferation|sensory perception of sound	collagen type IV	extracellular matrix structural constituent|integrin binding|metalloendopeptidase inhibitor activity			skin(2)|ovary(1)	3		all_lung(227;0.00101)|Lung NSC(271;0.00278)|Renal(207;0.0112)|Ovarian(221;0.0129)|all_hematologic(139;0.211)|Esophageal squamous(248;0.247)		Epithelial(121;1.17e-46)|all cancers(144;6.87e-42)|Lung(261;0.0137)|LUSC - Lung squamous cell carcinoma(224;0.0187)		GGAGATAAAGGAAATCCCGGG	0.448000													9	54					0	0	0.000673444	0	0
DGKD	8527	broad.mit.edu	37	2	234360705	234360705	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:234360705C>T	uc002vui.1	+	18	2275	c.2263C>T	c.(2263-2265)CTA>TTA	p.L755L	DGKD_uc002vuj.1_Silent_p.L711L|DGKD_uc010fyh.1_Silent_p.L622L|DGKD_uc010fyi.1_RNA	NM_152879	NP_690618	Q16760	DGKD_HUMAN	diacylglycerol kinase, delta 130kDa isoform 2	755					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|cell growth|diacylglycerol metabolic process|endocytosis|epidermal growth factor receptor signaling pathway|multicellular organismal development|platelet activation|protein homooligomerization|protein transport|response to organic substance|second-messenger-mediated signaling	cytoplasm|cytoplasmic membrane-bounded vesicle|plasma membrane|plasma membrane	ATP binding|diacylglycerol binding|diacylglycerol kinase activity|metal ion binding|protein heterodimerization activity|protein homodimerization activity			central_nervous_system(2)|pancreas(1)|lung(1)|skin(1)	5		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0179)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0538)		Epithelial(121;1.31e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000416)|Lung(119;0.00285)|LUSC - Lung squamous cell carcinoma(224;0.00655)	Phosphatidylserine(DB00144)	ACCAGAAACCCTGTGAGTATG	0.458000													16	50					0	0	0.000422831	0	0
C2orf85	285093	broad.mit.edu	37	2	242814518	242814518	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr2:242814518C>T	uc010fzu.1	+	2	834	c.811C>T	c.(811-813)CAC>TAC	p.H271Y		NM_173821	NP_776182	Q14D33	CB085_HUMAN	hypothetical protein LOC285093	271						integral to membrane				ovary(1)	1						CCCCCTCTTCCACGGCCCCGG	0.672000													8	46					0	0	0.000978159	0	0
TMC2	117532	broad.mit.edu	37	20	2575613	2575613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:2575613C>T	uc002wgf.1	+	9	1091	c.1076C>T	c.(1075-1077)TCG>TTG	p.S359L	TMC2_uc002wgg.1_Missense_Mutation_p.S343L|TMC2_uc010zpw.1_Missense_Mutation_p.S191L|TMC2_uc010zpx.1_Missense_Mutation_p.S190L	NM_080751	NP_542789	Q8TDI7	TMC2_HUMAN	transmembrane cochlear-expressed protein 2	359	Cytoplasmic (Potential).					integral to membrane				ovary(3)	3						GTCATTCGATCGTAAGTATGA	0.552000													8	93					0	0	0.000274275	0	0
C20orf103	24141	broad.mit.edu	37	20	9498771	9498771	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:9498771C>T	uc002wni.1	+	5	789	c.560C>T	c.(559-561)ACC>ATC	p.T187I	C20orf103_uc010zrc.1_Missense_Mutation_p.T143I	NM_012261	NP_036393	Q9UJQ1	CT103_HUMAN	chromosome 20 open reading frame 103 precursor	187	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|lung(1)|breast(1)	3			COAD - Colon adenocarcinoma(9;0.194)			GCTCAACAAACCATTTCACTG	0.522000													11	49					0	0	0.000673444	0	0
C20orf94	128710	broad.mit.edu	37	20	10603716	10603716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:10603716G>A	uc010zre.1	+	8	1096	c.916G>A	c.(916-918)GAC>AAC	p.D306N		NM_001009608	NP_001009608	Q5VYV7	CT094_HUMAN	hypothetical protein LOC128710	306							protein binding				0						GGAAGACTTCGACCACCACGG	0.488000													23	94					0	0	0.000586117	0	0
OTOR	56914	broad.mit.edu	37	20	16729075	16729076	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:16729075_16729076CG>AT	uc002wpj.2	+	1	73_74	c.29_30CG>AT	c.(28-30)CCG>CAT	p.P10H	OTOR_uc002wpk.2_5'Flank	NM_020157	NP_064542	Q9NRC9	OTOR_HUMAN	otoraplin precursor	10					sensory perception of sound	extracellular region				ovary(1)|central_nervous_system(1)	2						CTTTTCCTCCCGGGTCTTGTGG	0.431000													10	335					0	0	6.4e-05	0	0
C20orf79	140856	broad.mit.edu	37	20	18794707	18794707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:18794707G>A	uc002wrk.2	+	1	338	c.248G>A	c.(247-249)CGG>CAG	p.R83Q	uc002wrj.1_Intron	NM_178483	NP_848578	Q9UJQ7	CT079_HUMAN	hypothetical protein LOC140856	83	SCP2.						sterol binding			skin(3)	3						ACCATTTTGCGGTGGACCATT	0.493000													14	67					0	0	0.000422831	0	0
SLC24A3	57419	broad.mit.edu	37	20	19261711	19261711	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:19261711G>A	uc002wrl.2	+	2	448	c.251G>A	c.(250-252)AGC>AAC	p.S84N	LOC100130264_uc010zsd.1_Intron	NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	84	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						CTCCGGAACAGCAAGAACTGC	0.537000													11	40					0	0	0.00010058	0	0
TTLL9	164395	broad.mit.edu	37	20	30486300	30486300	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:30486300C>T	uc010gdx.1	+	4	391	c.138C>T	c.(136-138)TTC>TTT	p.F46F	TTLL9_uc002wwy.1_RNA|TTLL9_uc002wwz.1_RNA|TTLL9_uc002wxa.1_RNA|TTLL9_uc002wxb.1_RNA|TTLL9_uc010zto.1_RNA|TTLL9_uc002wxc.2_Nonsense_Mutation_p.Q56*|TTLL9_uc010ztp.1_RNA	NM_001008409	NP_001008409	Q3SXZ7	TTLL9_HUMAN	tubulin tyrosine ligase-like family, member 9	46	TTL.				protein modification process	cilium|microtubule|microtubule basal body	ATP binding|tubulin-tyrosine ligase activity			ovary(2)	2			Colorectal(19;0.00306)|COAD - Colon adenocarcinoma(19;0.0347)			CGATCCGGTTCAAGACCACCC	0.527000													15	61					0	0	0.000132079	0	0
BPIL1	80341	broad.mit.edu	37	20	31601668	31601668	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:31601668C>G	uc002wyj.2	+	5	555	c.361C>G	c.(361-363)CGC>GGC	p.R121G		NM_025227	NP_079503	Q8N4F0	BPIL1_HUMAN	bactericidal/permeability-increasing	121						extracellular region	lipid binding			skin(2)|large_intestine(1)|ovary(1)	4						GGCTGACACCCGCGTGACCCA	0.637000													3	34					0	0	6.4e-05	0	0
C20orf185	359710	broad.mit.edu	37	20	31644399	31644399	+	Missense_Mutation	SNP	C	T	T	rs112217883	byFrequency	TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:31644399C>T	uc002wym.1	+	2	176	c.176C>T	c.(175-177)TCG>TTG	p.S59L		NM_182658	NP_872599	P59826	LPLC3_HUMAN	antimicrobial peptide RYA3 precursor	59	Leu-rich.				innate immune response	cytoplasm|extracellular region	lipid binding|protein binding			ovary(4)	4						GTGCTGGGATCGGTCACAGCT	0.597000													10	74					0	0	0.000978159	0	0
PTPRT	11122	broad.mit.edu	37	20	40709572	40709572	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:40709572C>T	uc002xkg.2	-	31	4457	c.4273G>A	c.(4273-4275)GAA>AAA	p.E1425K	PTPRT_uc010ggj.2_Missense_Mutation_p.E1444K|PTPRT_uc010ggi.2_Missense_Mutation_p.E628K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1425	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TTATACTGTTCCTgagaggcg	0.289000													12	47					0	0	0.00010058	0	0
PTPRT	11122	broad.mit.edu	37	20	41306689	41306689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:41306689C>T	uc002xkg.2	-	7	1154	c.970G>A	c.(970-972)GAA>AAA	p.E324K	PTPRT_uc010ggj.2_Missense_Mutation_p.E324K	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	324	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TATTCCACTTCCTTCAGGATG	0.567000													14	65					0	0	0.000422831	0	0
PTPRT	11122	broad.mit.edu	37	20	41306775	41306775	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:41306775G>C	uc002xkg.2	-	7	1068	c.884C>G	c.(883-885)CCA>CGA	p.P295R	PTPRT_uc010ggj.2_Missense_Mutation_p.P295R	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	295	Extracellular (Potential).|Fibronectin type-III 1.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAGCAGCTCTGGGGGAGCAAT	0.517000													3	65					0	0	0.000602214	0	0
SLC13A3	64849	broad.mit.edu	37	20	45217888	45217889	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:45217888_45217889CC>TT	uc002xsf.1	-	7	964_965	c.926_927GG>AA	c.(925-927)TGG>TAA	p.W309*	SLC13A3_uc010ghn.1_Nonsense_Mutation_p.W278*|SLC13A3_uc010zxw.1_Nonsense_Mutation_p.W259*|SLC13A3_uc002xsg.1_Nonsense_Mutation_p.W262*|SLC13A3_uc010gho.1_Nonsense_Mutation_p.W262*|SLC13A3_uc010zxx.1_Nonsense_Mutation_p.W211*	NM_022829	NP_073740	Q8WWT9	S13A3_HUMAN	solute carrier family 13 member 3 isoform a	309	Cytoplasmic (Potential).					integral to membrane|plasma membrane	high affinity sodium:dicarboxylate symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)			Succinic acid(DB00139)	TATTCTTCCTCCAGCCCCTGAA	0.371000													14	70					0	0	6.4e-05	0	0
ZNF217	7764	broad.mit.edu	37	20	52198351	52198351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:52198351C>T	uc002xwq.3	-	1	1286	c.1015G>A	c.(1015-1017)GGC>AGC	p.G339S	ZNF217_uc010gij.1_Missense_Mutation_p.G331S	NM_006526	NP_006517	O75362	ZN217_HUMAN	zinc finger protein 217	339					negative regulation of transcription, DNA-dependent	histone deacetylase complex	protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|lung(1)|breast(1)	6	all_cancers(1;6.75e-17)|all_epithelial(1;1.76e-18)|Breast(2;3.83e-14)|Lung NSC(4;9.04e-07)|all_lung(4;2.5e-06)|Ovarian(1;0.0398)		BRCA - Breast invasive adenocarcinoma(1;9.88e-17)|Epithelial(1;1.56e-14)|all cancers(1;9.44e-13)|STAD - Stomach adenocarcinoma(23;0.0474)|Colorectal(105;0.198)			GCACAACTGCCCTTATTTGTT	0.537000													13	101					0	0	0.000151284	0	0
CASS4	57091	broad.mit.edu	37	20	55033446	55033446	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:55033446G>A	uc002xxp.2	+	7	2229	c.2004G>A	c.(2002-2004)AGG>AGA	p.R668R	CASS4_uc002xxr.2_Silent_p.R668R|CASS4_uc010zze.1_Silent_p.R614R|CASS4_uc010gio.2_Silent_p.R231R	NM_001164116	NP_001157588	Q9NQ75	CASS4_HUMAN	HEF-like protein isoform a	668					cell adhesion	cytoplasm|cytoskeleton|focal adhesion	two-component sensor activity			ovary(2)|skin(1)	3						CTCCTGAGAGGAAACCCCGCT	0.527000													6	52					0	0	0.000157383	0	0
C20orf43	51507	broad.mit.edu	37	20	55049738	55049738	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:55049738T>C	uc002xxt.2	+	3	276	c.169T>C	c.(169-171)TAT>CAT	p.Y57H	C20orf43_uc010zzf.1_Missense_Mutation_p.Y87H|C20orf43_uc002xxu.2_Missense_Mutation_p.Y57H|C20orf43_uc002xxv.2_Missense_Mutation_p.Y57H	NM_016407	NP_057491	Q9BY42	CT043_HUMAN	hypothetical protein LOC51507	57										ovary(1)	1			Colorectal(105;0.202)			TTGCAGACTTTATAACAAAGA	0.353000													39	176					0	0	0.000437636	0	0
Unknown	0	broad.mit.edu	37	20	56063911	56063911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:56063911C>T	uc010zzl.1	-	1	173	c.173G>A	c.(172-174)GGA>GAA	p.G58E	CTCFL_uc010giu.2_RNA|CTCFL_uc010giv.2_RNA	NM_001008735	NP_001008735			high-mobility group box 1-like 1																		CTCAAATTTTCCTTTCTCTTT	0.418000													27	131					0	0	0.000720815	0	0
PRIC285	85441	broad.mit.edu	37	20	62193696	62193696	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:62193696G>A	uc002yfm.2	-	10	7234	c.6342C>T	c.(6340-6342)TCC>TCT	p.S2114S	PRIC285_uc002yfl.1_Silent_p.S1545S	NM_001037335	NP_001032412	Q9BYK8	PR285_HUMAN	PPAR-alpha interacting complex protein 285	2114					cellular lipid metabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	ATP binding|DNA binding|helicase activity|ribonuclease activity|RNA binding|transcription coactivator activity|zinc ion binding			central_nervous_system(2)	2	all_cancers(38;2.51e-11)|all_epithelial(29;8.27e-13)		Epithelial(9;1.27e-08)|all cancers(9;7.32e-08)|BRCA - Breast invasive adenocarcinoma(10;5.15e-06)			TGACCAGCGGGGACGCCTCCT	0.687000													4	6					0	0	0.00024832	0	0
SAMSN1	64092	broad.mit.edu	37	21	15889352	15889352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr21:15889352C>T	uc002yju.1	-	3	222	c.140G>A	c.(139-141)GGA>GAA	p.G47E	SAMSN1_uc010gky.1_Intron|SAMSN1_uc002yjv.1_Missense_Mutation_p.G115E	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	47					negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		TGTGGGATCTCCTTCATGTGC	0.323000													5	39					0	0	3.59834e-05	0	0
KRTAP23-1	337963	broad.mit.edu	37	21	31720739	31720739	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr21:31720739C>T	uc002yny.1	-	1	186	c.186G>A	c.(184-186)CTG>CTA	p.L62L		NM_181624	NP_853655	A1A580	KR231_HUMAN	keratin associated protein 23-1	62						intermediate filament					0						AGGGGTTTCCCAGCAAGTCTC	0.612000													6	36					0	0	3.59834e-05	0	0
KRTAP6-2	337967	broad.mit.edu	37	21	31971130	31971130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr21:31971130C>T	uc011adc.1	-	1	64	c.64G>A	c.(64-66)GGC>AGC	p.G22S	KRTAP22-1_uc011add.1_5'Flank	NM_181604	NP_853635	Q3LI66	KRA62_HUMAN	keratin associated protein 6-2	22						intermediate filament					0						TAGCCTAGGCCTTCGTATCCA	0.567000													11	71					0	0	0.000151284	0	0
DSCAM	1826	broad.mit.edu	37	21	41385159	41385159	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr21:41385159C>T	uc002yyq.1	-	33	6293	c.5841G>A	c.(5839-5841)CCG>CCA	p.P1947P	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1947	Cytoplasmic (Potential).			HRPGDLIHLPPYLRMDFLLNRGGPGTSRDLSLGQACLEPQK SRTLKRPTVLEPIPMEAASSASSTREGQSWQPGAVATLPQR EGAELGQAAKMSSSQESLLDSRGHLKGNNPYAKSYTLV -> IGQVTSYICLHTLEWTFC (in Ref. 1; AAC17966).	cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CGGCTTCCATCGGGATGGGCT	0.657000													9	34					0	0	0.000442599	0	0
UBASH3A	53347	broad.mit.edu	37	21	43833612	43833612	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr21:43833612G>A	uc002zbe.2	+	5	683	c.647G>A	c.(646-648)AGC>AAC	p.S216N	UBASH3A_uc002zbf.2_Intron|UBASH3A_uc010gpc.2_Intron|UBASH3A_uc010gpd.2_Intron|UBASH3A_uc010gpe.2_Intron	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	216						cytosol|nucleus				ovary(3)	3						TCCTTCGTGAGCCACTACATC	0.488000													12	57					0	0	0.000151284	0	0
CABIN1	23523	broad.mit.edu	37	22	24487737	24487737	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr22:24487737C>T	uc002zzi.1	+	24	3853	c.3726C>T	c.(3724-3726)GCC>GCT	p.A1242A	CABIN1_uc002zzj.1_Silent_p.A1192A|CABIN1_uc002zzl.1_Silent_p.A1242A	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	1242					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						AGGAGGCTGCCCGCTACCCCA	0.637000													9	58					0	0	0.000673444	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30689964	30689964	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr22:30689964G>C	uc011akt.1	-	7	865	c.841C>G	c.(841-843)CGA>GGA	p.R281G	GATSL3_uc003ahf.2_RNA|GATSL3_uc003ahg.2_RNA|GATSL3_uc003ahh.2_RNA|GATSL3_uc010gvq.2_RNA|GATSL3_uc003ahi.2_Missense_Mutation_p.R139G|TBC1D10A_uc003ahj.3_Missense_Mutation_p.R193G|TBC1D10A_uc010gvu.2_Missense_Mutation_p.R288G|TBC1D10A_uc003ahk.3_Missense_Mutation_p.R281G	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	281	Rab-GAP TBC.					intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						GGCAAGGTTCGGGAGAAGGCG	0.607000													3	62					0	0	6.4e-05	0	0
BAIAP2L2	80115	broad.mit.edu	37	22	38494448	38494448	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr22:38494448C>T	uc003auw.2	-	5	462	c.318G>A	c.(316-318)AAG>AAA	p.K106K		NM_025045	NP_079321	Q6UXY1	BI2L2_HUMAN	BAI1-associated protein 2-like 2	106	IMD.				filopodium assembly|signal transduction		cytoskeletal adaptor activity|SH3 domain binding			pancreas(1)	1	Melanoma(58;0.045)					GCTTGGTGTTCTTCTCCATGT	0.602000											OREG0026556	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	64					0	0	0.00010058	0	0
FBLN1	2192	broad.mit.edu	37	22	45929715	45929715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr22:45929715C>T	uc003bgj.1	+	7	868	c.721C>T	c.(721-723)CGC>TGC	p.R241C	FBLN1_uc003bgg.1_Missense_Mutation_p.R241C|FBLN1_uc003bgh.2_Missense_Mutation_p.R241C|FBLN1_uc010gzz.2_Missense_Mutation_p.R279C|FBLN1_uc003bgi.1_Missense_Mutation_p.R241C	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	241	EGF-like 2; calcium-binding (Potential).				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		GGGCTCTTTCCGCTGCCAGCG	0.587000													23	117					0	0	0.000227799	0	0
CELSR1	9620	broad.mit.edu	37	22	46832145	46832145	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr22:46832145C>T	uc003bhw.1	-	4	4448	c.4448G>A	c.(4447-4449)GGC>GAC	p.G1483D		NM_014246	NP_055061	Q9NYQ6	CELR1_HUMAN	cadherin EGF LAG seven-pass G-type receptor 1	1483	Extracellular (Potential).|Laminin G-like 1.				central nervous system development|homophilic cell adhesion|neural tube closure|neuropeptide signaling pathway	integral to plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein dimerization activity			lung(4)|breast(4)|pancreas(2)|skin(1)	11		Ovarian(80;0.00142)|Breast(42;0.00296)|all_neural(38;0.0416)|Colorectal(5;0.0766)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00643)|BRCA - Breast invasive adenocarcinoma(115;0.171)		ATTGAAGCGGCCGTTGTAGAG	0.592000													8	45					0	0	0.000442599	0	0
PLXNB2	23654	broad.mit.edu	37	22	50727255	50727255	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr22:50727255G>A	uc003bkv.3	-	5	1403	c.1297C>T	c.(1297-1299)CTT>TTT	p.L433F		NM_012401	NP_036533	O15031	PLXB2_HUMAN	plexin B2 precursor	433	Extracellular (Potential).|Sema.				regulation of small GTPase mediated signal transduction	integral to membrane|intracellular	GTPase activator activity|protein binding|receptor activity			ovary(4)|central_nervous_system(1)|skin(1)	6		all_cancers(38;5.78e-13)|all_epithelial(38;1.71e-11)|all_lung(38;3.89e-05)|Breast(42;0.000523)|Lung NSC(38;0.000992)|Ovarian(80;0.0221)|Hepatocellular(38;0.0691)|Lung SC(80;0.113)		BRCA - Breast invasive adenocarcinoma(115;0.205)|LUAD - Lung adenocarcinoma(64;0.247)		ATCTCCACAAGGATAGAGTCG	0.617000													4	15					0	0	0.00024832	0	0
RPL23AP82	284942	broad.mit.edu	37	22	51237496	51237496	+	RNA	SNP	C	T	T	rs145825199	byFrequency	TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr22:51237496C>T	uc003bni.2	+	4		c.951C>T			RPL23AP82_uc003bns.2_RNA|RPL23AP82_uc010hbj.2_RNA	NR_026981				Homo sapiens cDNA FLJ75396 complete cds.												0						GGCATATGTTCGACTTGCTCC	0.433000													23	100					0	0	0.000295444	0	0
SRGAP3	9901	broad.mit.edu	37	3	9034642	9034642	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:9034642G>A	uc003brf.1	-	20	3182	c.2506C>T	c.(2506-2508)CAG>TAG	p.Q836*	SRGAP3_uc003brg.1_Nonsense_Mutation_p.Q812*	NM_014850	NP_055665	O43295	SRGP2_HUMAN	SLIT-ROBO Rho GTPase activating protein 3	836					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding		SRGAP3/RAF1(4)	central_nervous_system(4)|skin(3)|urinary_tract(1)|breast(1)	9				OV - Ovarian serous cystadenocarcinoma(96;0.0563)		GTGGGGGACTGGAGGTCGTTT	0.572000			T	RAF1	pilocytic astrocytoma								9	31					0	0	0.000673444	0	0
SETD5	55209	broad.mit.edu	37	3	9486919	9486919	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:9486919G>T	uc003brt.2	+	12	1810	c.1375G>T	c.(1375-1377)GAG>TAG	p.E459*	SETD5_uc003brs.1_Nonsense_Mutation_p.E440*|SETD5_uc003bru.2_Nonsense_Mutation_p.E361*|SETD5_uc003brv.2_Nonsense_Mutation_p.E348*|SETD5_uc010hck.2_5'UTR|SETD5_uc003brw.1_Nonsense_Mutation_p.E128*|SETD5_uc003brx.2_Nonsense_Mutation_p.E128*	NM_001080517	NP_001073986	Q9C0A6	SETD5_HUMAN	SET domain containing 5	459										ovary(2)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.112)		TGAGGCTTCAGAGGAGAATAA	0.478000													5	21					1.23904e-05	0.00018474	0.000602214	1	0
KCNH8	131096	broad.mit.edu	37	3	19575176	19575176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:19575176C>T	uc003cbk.1	+	16	3104	c.2909C>T	c.(2908-2910)CCC>CTC	p.P970L	KCNH8_uc010hex.1_Missense_Mutation_p.P431L	NM_144633	NP_653234	Q96L42	KCNH8_HUMAN	potassium voltage-gated channel, subfamily H,	970	Ser-rich.|Cytoplasmic (Potential).					integral to membrane	two-component sensor activity			lung(4)|ovary(1)	5						GGGAGCAGCCCCCAACGAACT	0.488000													27	66					0	0	0.000279167	0	0
CDCP1	64866	broad.mit.edu	37	3	45132840	45132840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:45132840C>T	uc003com.2	-	7	1953	c.1818G>A	c.(1816-1818)ATG>ATA	p.M606I		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	606	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CCTGGATGATCATGAATGCGC	0.602000													11	41					0	0	0.000673444	0	0
COL7A1	1294	broad.mit.edu	37	3	48623609	48623609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:48623609C>T	uc003ctz.2	-	27	3622	c.3621G>A	c.(3619-3621)ATG>ATA	p.M1207I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1207	Nonhelical region (NC1).|VWFA 2.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GGACAGAGTCCATACCCGGCG	0.602000													19	65					0	0	0.00074312	0	0
PTPRG	5793	broad.mit.edu	37	3	62063909	62063909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:62063909G>A	uc003dlb.2	+	5	1311	c.592G>A	c.(592-594)GGA>AGA	p.G198R	PTPRG_uc003dlc.2_Missense_Mutation_p.G198R	NM_002841	NP_002832	P23470	PTPRG_HUMAN	protein tyrosine phosphatase, receptor type, G	198	Extracellular (Potential).|Alpha-carbonic anhydrase.				transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	identical protein binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(5)|lung(2)	7				BRCA - Breast invasive adenocarcinoma(55;0.000376)|KIRC - Kidney renal clear cell carcinoma(10;0.0499)|Kidney(10;0.065)		CAGAATAATCGGAGCCATGGC	0.313000													5	35					0	0	0.000602214	0	0
ROBO1	6091	broad.mit.edu	37	3	79639059	79639059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:79639059C>T	uc003dqe.2	-	2	211	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_002941	NP_002932	Q9Y6N7	ROBO1_HUMAN	roundabout 1 isoform a	1					activation of caspase activity|axon midline choice point recognition|cell migration involved in sprouting angiogenesis|chemorepulsion involved in postnatal olfactory bulb interneuron migration|homophilic cell adhesion|negative regulation of chemokine-mediated signaling pathway|negative regulation of mammary gland epithelial cell proliferation|negative regulation of negative chemotaxis|positive regulation of axonogenesis|Roundabout signaling pathway	cell surface|cytoplasm|integral to plasma membrane	axon guidance receptor activity|identical protein binding|LRR domain binding			large_intestine(2)	2		Lung SC(41;0.0257)|Lung NSC(201;0.0439)		LUSC - Lung squamous cell carcinoma(21;0.008)|Epithelial(33;0.00999)|Lung(72;0.0177)|BRCA - Breast invasive adenocarcinoma(55;0.0274)		GTTTCCATTTCATCTTTGTCC	0.403000													22	86					0	0	0.000586117	0	0
PROS1	5627	broad.mit.edu	37	3	93615439	93615439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:93615439G>A	uc003drb.3	-	9	1287	c.946C>T	c.(946-948)CGT>TGT	p.R316C	PROS1_uc010hoo.2_Missense_Mutation_p.R185C|PROS1_uc003dqz.3_Missense_Mutation_p.R185C	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	316	Laminin G-like 1.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TCTGGCAAACGAAATTTTAAA	0.408000													25	106					0	0	0.00106085	0	0
CRYBG3	131544	broad.mit.edu	37	3	97596100	97596100	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:97596100C>T	uc003drx.2	+	1	282	c.218C>T	c.(217-219)ACA>ATA	p.T73I		NM_153605	NP_705833			beta-gamma crystallin domain containing 3												0						GCAAGACAAACACAGTCTGTC	0.418000													11	41					0	0	0.000673444	0	0
BBX	56987	broad.mit.edu	37	3	107491624	107491624	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:107491624G>A	uc010hpr.2	+	11	1383	c.1056G>A	c.(1054-1056)AAG>AAA	p.K352K	BBX_uc003dwk.3_Silent_p.K352K|BBX_uc003dwl.3_Intron|BBX_uc010hps.1_Silent_p.K373K|BBX_uc003dwm.3_Silent_p.K352K|BBX_uc003dwo.3_5'Flank	NM_001142568	NP_001136040	Q8WY36	BBX_HUMAN	HMG-BOX transcription factor BBX isoform 1	352	Potential.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(3;0.112)			GGTTACAGAAGGAAGCAGAAT	0.313000													40	145					0	0	0.000781405	0	0
CCDC80	151887	broad.mit.edu	37	3	112358346	112358346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:112358346G>A	uc003dzf.2	-	2	625	c.407C>T	c.(406-408)TCC>TTC	p.S136F	CCDC80_uc011bhv.1_Missense_Mutation_p.S136F|CCDC80_uc003dzg.2_Missense_Mutation_p.S136F|CCDC80_uc003dzh.1_Missense_Mutation_p.S136F	NM_199512	NP_955806	Q76M96	CCD80_HUMAN	steroid-sensitive protein 1 precursor	136										ovary(2)	2						GGGAGAGCTGGACCCCGAAGG	0.572000													14	58					0	0	0.000219431	0	0
CASR	846	broad.mit.edu	37	3	121981060	121981060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:121981060C>T	uc003eev.3	+	4	1550	c.1178C>T	c.(1177-1179)CCC>CTC	p.P393L	CASR_uc003eew.3_Missense_Mutation_p.P393L	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	393	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCCTTCCGACCCCTCTGTACA	0.493000													8	44					0	0	0.000442599	0	0
KALRN	8997	broad.mit.edu	37	3	124438240	124438240	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:124438240C>T	uc003ehg.2	+	60	9011	c.8884C>T	c.(8884-8886)CGC>TGC	p.R2962C	KALRN_uc003ehk.2_Missense_Mutation_p.R1265C	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	2961					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						CATAGAACGTCGCAAGCACCA	0.547000													9	34					0	0	0.000978159	0	0
CLSTN2	64084	broad.mit.edu	37	3	140277565	140277565	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:140277565C>T	uc003etn.2	+	12	2097	c.1907C>T	c.(1906-1908)ACC>ATC	p.T636I		NM_022131	NP_071414	Q9H4D0	CSTN2_HUMAN	calsyntenin 2 precursor	636	Extracellular (Potential).				homophilic cell adhesion	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|plasma membrane	calcium ion binding			skin(3)|large_intestine(2)|pancreas(1)|central_nervous_system(1)	7						CCCCGGATCACCCTCCGGGGC	0.562000										HNSCC(16;0.037)			7	41					0	0	0.000157383	0	0
SLC9A9	285195	broad.mit.edu	37	3	143371161	143371161	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:143371161C>G	uc003evn.2	-	6	873	c.691G>C	c.(691-693)GAC>CAC	p.D231H	SLC9A9_uc011bnk.1_Missense_Mutation_p.D105H	NM_173653	NP_775924	Q8IVB4	SL9A9_HUMAN	solute carrier family 9 (sodium/hydrogen	231					regulation of pH	integral to membrane|late endosome membrane|recycling endosome	sodium:hydrogen antiporter activity			ovary(2)|skin(1)	3						GTGTACAGGTCAGGGTCGACG	0.458000													3	11					0	0	6.4e-05	0	0
BCHE	590	broad.mit.edu	37	3	165548085	165548085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:165548085G>A	uc003fem.3	-	2	897	c.737C>T	c.(736-738)ACC>ATC	p.T246I	BCHE_uc003fen.3_Intron	NM_000055	NP_000046	P06276	CHLE_HUMAN	butyrylcholinesterase precursor	246					choline metabolic process|cocaine metabolic process|synaptic transmission, cholinergic	endoplasmic reticulum lumen|extracellular space|membrane	acetylcholinesterase activity|beta-amyloid binding|carboxylesterase activity|cholinesterase activity|enzyme binding			ovary(3)|pancreas(1)	4					Ambenonium(DB01122)|Atropine(DB00572)|Bambuterol(DB01408)|Chlorpromazine(DB00477)|Choline(DB00122)|Cinnarizine(DB00568)|Demecarium bromide(DB00944)|Dibucaine(DB00527)|Donepezil(DB00843)|Echothiophate Iodide(DB01057)|Edrophonium(DB01010)|Ethopropazine(DB00392)|Etomidate(DB00292)|Galantamine(DB00674)|Hexafluronium bromide(DB00941)|Isoflurophate(DB00677)|Mefloquine(DB00358)|Mivacurium(DB01226)|Neostigmine(DB01400)|Pancuronium(DB01337)|Pralidoxime(DB00733)|Procainamide(DB01035)|Pyridostigmine(DB00545)|Rivastigmine(DB00989)|Succinylcholine(DB00202)|Terbutaline(DB00871)|Trimethaphan(DB01116)	AATGGCTCTGGTGAACAATGA	0.433000													8	96					0	0	0.000274275	0	0
MECOM	2122	broad.mit.edu	37	3	169099050	169099050	+	Silent	SNP	G	A	A	rs142755875	by1000genomes	TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr3:169099050G>A	uc011bpj.1	-	2	703	c.300C>T	c.(298-300)ATC>ATT	p.I100I	MECOM_uc003ffl.2_Silent_p.I72I|MECOM_uc011bpk.1_Intron|MECOM_uc010hwn.2_Silent_p.I100I|MECOM_uc011bpl.1_Silent_p.I100I	NM_004991	NP_004982	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform c	Error:Variant_position_missing_in_Q03112_after_alignment					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CACCTACTTCGATCTTCCTTT	0.453000													12	92					0	0	0.000978159	0	0
GBA3	57733	broad.mit.edu	37	4	22749662	22749662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:22749662G>A	uc003gqp.3	+	3	1121	c.1030G>A	c.(1030-1032)GAT>AAT	p.D344N	GBA3_uc010iep.2_Intron|GBA3_uc011bxo.1_Missense_Mutation_p.D345N	NM_020973	NP_066024	Q9H227	GBA3_HUMAN	cytosolic beta-glucosidase isoform a	344					glycoside catabolic process|glycosylceramide catabolic process	cytosol	beta-galactosidase activity|beta-glucosidase activity|cation binding|glycosylceramidase activity				0						GAAAAATGTGGATTGGATCTA	0.373000													7	32					0	0	0.000157383	0	0
AFM	173	broad.mit.edu	37	4	74364937	74364937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:74364937G>A	uc003hhb.2	+	11	1427	c.1396G>A	c.(1396-1398)GAA>AAA	p.E466K		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	466	Albumin 3.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			TACGCTAAGTGAAGAGTTTGC	0.398000													8	38					0	0	0.000274275	0	0
GK2	2712	broad.mit.edu	37	4	80327846	80327847	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:80327846_80327847CC>TT	uc003hlu.2	-	1	1526_1527	c.1508_1509GG>AA	c.(1507-1509)TGG>TAA	p.W503*		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	503					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CGGCTTTCTTCCATGTGGCATA	0.460000													16	77					0	0	6.4e-05	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86916516	86916516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:86916516C>T	uc003hpk.2	+	9	2158	c.1709C>T	c.(1708-1710)TCC>TTC	p.S570F	ARHGAP24_uc003hpl.2_Missense_Mutation_p.S475F|ARHGAP24_uc010ikf.2_Missense_Mutation_p.S485F|ARHGAP24_uc003hpm.2_Missense_Mutation_p.S477F	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	570					angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		AACTCCAACTCCTGTCGCTCT	0.537000													16	68					0	0	0.00074312	0	0
SMAD1	4086	broad.mit.edu	37	4	146461204	146461204	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:146461204C>T	uc003ikc.2	+	3	1065	c.649C>T	c.(649-651)CAG>TAG	p.Q217*	SMAD1_uc003ikd.2_Nonsense_Mutation_p.Q217*|SMAD1_uc010iov.2_Nonsense_Mutation_p.Q217*|SMAD1_uc011cic.1_Nonsense_Mutation_p.Q217*|SMAD1_uc003ikf.2_RNA	NM_005900	NP_005891	Q15797	SMAD1_HUMAN	Sma- and Mad-related protein 1	217					BMP signaling pathway|embryonic pattern specification|primary miRNA processing|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway	cytosol|integral to membrane|nuclear inner membrane	co-SMAD binding|I-SMAD binding|identical protein binding|protein kinase binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity			ovary(1)	1	all_hematologic(180;0.151)					AAGCCCTTTCCAGATGCCAGG	0.527000													16	44					0	0	0.000295444	0	0
TTC29	83894	broad.mit.edu	37	4	147824778	147824778	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:147824778C>T	uc003ikw.3	-	6	731	c.504G>A	c.(502-504)AAG>AAA	p.K168K	TTC29_uc010ipc.2_RNA|TTC29_uc003ikx.3_Silent_p.K194K|TTC29_uc010ipd.1_Silent_p.K168K	NM_031956	NP_114162	Q8NA56	TTC29_HUMAN	tetratricopeptide repeat domain 29	168							binding				0	all_hematologic(180;0.151)					GCTGAGCAATCTTAAAACATC	0.428000													5	28					0	0	0.000602214	0	0
EDNRA	1909	broad.mit.edu	37	4	148406839	148406839	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:148406839A>C	uc003iky.2	+	2	698	c.6A>C	c.(4-6)GAA>GAC	p.E2D	EDNRA_uc011cid.1_Intron|EDNRA_uc010ipe.1_Missense_Mutation_p.E2D|EDNRA_uc010ipf.1_RNA|EDNRA_uc010ipg.1_Missense_Mutation_p.E2D	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	2					activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	TCAAGATGGAAACCCTTTGCC	0.388000													7	40					0	0	0.000157383	0	0
GLRB	2743	broad.mit.edu	37	4	158091772	158091772	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:158091772G>A	uc003ipj.2	+	10	1588	c.1386G>A	c.(1384-1386)GCG>GCA	p.A462A		NM_000824	NP_000815	P48167	GLRB_HUMAN	glycine receptor, beta isoform A precursor	462	Cytoplasmic (Probable).				nervous system development|neuropeptide signaling pathway|startle response	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|protein binding|receptor activity			skin(2)	2	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.0564)|COAD - Colon adenocarcinoma(41;0.0642)|Kidney(143;0.0707)	Glycine(DB00145)	CTCCCCCTGCGAAACCTGTTA	0.383000													19	74					0	0	0.000132079	0	0
TRIM60	166655	broad.mit.edu	37	4	165962087	165962087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:165962087G>A	uc003iqy.1	+	3	1033	c.863G>A	c.(862-864)AGA>AAA	p.R288K	TRIM60_uc010iqx.1_Missense_Mutation_p.R288K	NM_152620	NP_689833	Q495X7	TRI60_HUMAN	ring finger protein 129	288	B30.2/SPRY.					intracellular	zinc ion binding			skin(1)	1	all_hematologic(180;0.221)	Prostate(90;0.0959)|Melanoma(52;0.18)		GBM - Glioblastoma multiforme(119;0.0844)		GGCTTGGACAGAATTATCAAG	0.373000													14	112					0	0	0.00074312	0	0
TLL1	7092	broad.mit.edu	37	4	166976276	166976276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:166976276G>A	uc003irh.1	+	13	2220	c.1573G>A	c.(1573-1575)GGA>AGA	p.G525R	TLL1_uc011cjn.1_Missense_Mutation_p.G548R|TLL1_uc011cjo.1_Missense_Mutation_p.G349R	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	525	CUB 2.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		AGTTAGAGATGGAACCAGTGA	0.338000													16	66					0	0	0.000958276	0	0
TRIML1	339976	broad.mit.edu	37	4	189068016	189068016	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr4:189068016C>T	uc003izm.1	+	6	1012	c.897C>T	c.(895-897)CTC>CTT	p.L299L	TRIML1_uc003izn.1_Silent_p.L23L	NM_178556	NP_848651	Q8N9V2	TRIML_HUMAN	tripartite motif family-like 1	299	B30.2/SPRY.				multicellular organismal development		ligase activity|zinc ion binding			ovary(1)|pancreas(1)|breast(1)|skin(1)	4		all_cancers(14;1.33e-43)|all_epithelial(14;7.86e-31)|all_lung(41;4.3e-13)|Lung NSC(41;9.69e-13)|Melanoma(20;7.86e-05)|Breast(6;0.000148)|Hepatocellular(41;0.0218)|Renal(120;0.0376)|Prostate(90;0.0513)|all_hematologic(60;0.062)		OV - Ovarian serous cystadenocarcinoma(60;1.52e-11)|BRCA - Breast invasive adenocarcinoma(30;4.19e-06)|GBM - Glioblastoma multiforme(59;0.000232)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.156)		ATGCCTATCTCGTGTTGTCGG	0.512000													23	140					0	0	0.000375601	0	0
EGFLAM	133584	broad.mit.edu	37	5	38427313	38427313	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:38427313G>A	uc003jlc.1	+	14	2337	c.2013G>A	c.(2011-2013)GTG>GTA	p.V671V	EGFLAM_uc003jlb.1_Silent_p.V671V|EGFLAM_uc003jle.1_Silent_p.V437V|EGFLAM_uc003jlf.1_Silent_p.V37V	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	671	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					GGGGCCACGTGGAGTTCCGCT	0.522000													32	110					0	0	0.000409698	0	0
ACTBL2	345651	broad.mit.edu	37	5	56778079	56778079	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:56778079G>A	uc003jrm.2	-	1	558	c.456C>T	c.(454-456)ATC>ATT	p.I152I		NM_001017992	NP_001017992	Q562R1	ACTBL_HUMAN	actin, beta-like 2	152						cytoplasm|cytoskeleton	ATP binding			ovary(3)	3		Lung NSC(810;0.000135)|Prostate(74;0.055)|Breast(144;0.0707)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;4.24e-37)		AATCCATCACGATGCCTGTGG	0.552000													17	41					0	0	0.000958276	0	0
DMGDH	29958	broad.mit.edu	37	5	78347223	78347223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:78347223G>A	uc003kfs.2	-	5	638	c.632C>T	c.(631-633)GCC>GTC	p.A211V	DMGDH_uc011cte.1_Missense_Mutation_p.A61V|DMGDH_uc011ctf.1_Intron|DMGDH_uc011ctg.1_Intron	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	211					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TTTTAAAAGGGCACCACATTT	0.433000													20	98					0	0	0.000958276	0	0
TTC37	9652	broad.mit.edu	37	5	94861322	94861322	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:94861322C>A	uc003klb.2	-	14	1460	c.1190G>T	c.(1189-1191)CGG>CTG	p.R397L	TTC37_uc010jbf.1_Missense_Mutation_p.R349L	NM_014639	NP_055454	Q6PGP7	TTC37_HUMAN	tetratricopeptide repeat domain 37	397	TPR 5.						binding			ovary(3)|pancreas(1)	4						ACCTTTGTTCCGATAGGCCAA	0.333000													8	351					0.000274275	0.00404496	0.000274275	1	0
SLCO6A1	133482	broad.mit.edu	37	5	101834509	101834509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:101834509C>T	uc003knn.2	-	1	212	c.40G>A	c.(40-42)GAA>AAA	p.E14K	SLCO6A1_uc003kno.2_Missense_Mutation_p.E14K|SLCO6A1_uc003knp.2_Missense_Mutation_p.E14K|SLCO6A1_uc003knq.2_Missense_Mutation_p.E14K	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	14	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		CTTGAGACTTCATCCTGGCTC	0.687000													24	102					0	0	0.00106085	0	0
PKD2L2	27039	broad.mit.edu	37	5	137230154	137230154	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:137230154G>A	uc003lby.2	+	4	436	c.380G>A	c.(379-381)GGA>GAA	p.G127E	PKD2L2_uc010jep.1_Missense_Mutation_p.G67E|PKD2L2_uc003lbw.1_Missense_Mutation_p.G127E|PKD2L2_uc003lbx.2_Missense_Mutation_p.G127E	NM_014386	NP_055201	Q9NZM6	PK2L2_HUMAN	polycystic kidney disease 2-like 2	127	Polycystin motif.|Extracellular (Potential).					integral to membrane	calcium ion binding|ion channel activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0109)			ATACTTCTAGGAGTTCCCAGA	0.383000													12	51					0	0	0.000978159	0	0
NRG2	9542	broad.mit.edu	37	5	139232060	139232060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:139232060G>A	uc003lex.1	-	8	1726	c.1501C>T	c.(1501-1503)CCT>TCT	p.P501S	NRG2_uc003lev.1_Missense_Mutation_p.P509S|NRG2_uc003lew.1_Missense_Mutation_p.P503S|NRG2_uc003ley.1_Missense_Mutation_p.P495S	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	501	Cytoplasmic (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGTGAGAAGGAGAACAGGAG	0.532000													13	55					0	0	0.000219431	0	0
HMMR	3161	broad.mit.edu	37	5	162911176	162911176	+	Silent	SNP	A	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr5:162911176A>G	uc003lzf.2	+	16	2066	c.1884A>G	c.(1882-1884)TTA>TTG	p.L628L	HMMR_uc003lzh.2_Silent_p.L629L|HMMR_uc003lzg.2_Silent_p.L613L|HMMR_uc011dem.1_Silent_p.L542L|uc003lzi.2_Intron	NM_012484	NP_036616	O75330	HMMR_HUMAN	hyaluronan-mediated motility receptor isoform b	628						cell surface|cytoplasm	hyaluronic acid binding				0	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0296)|OV - Ovarian serous cystadenocarcinoma(192;0.0423)|Epithelial(171;0.0848)		ATGCTAAATTATTGGGTCATC	0.313000													6	40					0	0	3.59834e-05	0	0
LRRC16A	55604	broad.mit.edu	37	6	25600727	25600727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:25600727C>T	uc011djw.1	+	33	3681	c.3305C>T	c.(3304-3306)CCA>CTA	p.P1102L	LRRC16A_uc010jpx.2_Missense_Mutation_p.P1102L|LRRC16A_uc010jpy.2_Missense_Mutation_p.P1102L	NM_017640	NP_060110	Q5VZK9	LR16A_HUMAN	leucine rich repeat containing 16A	1102					actin filament organization|blood coagulation|cell migration|lamellipodium assembly|ruffle organization|urate metabolic process	cytosol|lamellipodium|nucleus				ovary(1)|breast(1)|central_nervous_system(1)|pancreas(1)	4						GTCAGAAGTCCACCTGTGGAC	0.498000													9	59					0	0	0.000442599	0	0
HIST1H4D	8360	broad.mit.edu	37	6	26189177	26189177	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:26189177C>A	uc003ngu.2	-	1	128	c.128G>T	c.(127-129)GGC>GTC	p.G43V		NM_003539	NP_003530	P62805	H4_HUMAN	histone cluster 1, H4d	43					CenH3-containing nucleosome assembly at centromere|negative regulation of megakaryocyte differentiation|phosphatidylinositol-mediated signaling|telomere maintenance	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.196)				ACGCTTGACGCCGCCGCGGCG	0.552000													14	37					9.31168e-06	0.000139142	0.000151284	1	0
LOC222699	222699	broad.mit.edu	37	6	28186328	28186328	+	RNA	SNP	T	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:28186328T>C	uc011dla.1	-	1		c.380A>G				NR_002936				Homo sapiens pp14762 mRNA, complete cds.												0						GTGGGCTTCTTATTTCTTTTT	0.537000													3	11					0	0	6.4e-05	0	0
C6orf27	80737	broad.mit.edu	37	6	31734072	31734072	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:31734072G>A	uc011dog.1	-	15	2512	c.2274C>T	c.(2272-2274)GAC>GAT	p.D758D	C6orf27_uc003nxd.2_Silent_p.D433D	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	758						extracellular region				ovary(3)	3						AAGTCCTAAGGTCAAGATCCT	0.612000													35	169					0	0	0.000953801	0	0
NEU1	4758	broad.mit.edu	37	6	31828391	31828391	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:31828391C>A	uc003nxq.3	-	4	779	c.623G>T	c.(622-624)CGG>CTG	p.R208L	NEU1_uc010jtg.2_RNA|NEU1_uc003nxr.3_RNA|NEU1_uc010jth.2_Missense_Mutation_p.R39L|NEU1_uc003nxs.3_Missense_Mutation_p.R208L	NM_000434	NP_000425	Q99519	NEUR1_HUMAN	neuraminidase precursor	208						cytoplasmic membrane-bounded vesicle|lysosomal lumen|lysosomal membrane|plasma membrane	exo-alpha-sialidase activity|protein binding			ovary(1)	1					Oseltamivir(DB00198)|Zanamivir(DB00558)	CCGTGGCTCCCGCTGTTTCTG	0.602000													7	201					8.12818e-05	0.0012066	8.12818e-05	1	0
C2	717	broad.mit.edu	37	6	31903790	31903791	+	Missense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:31903790_31903791CG>AT	uc003nyf.2	+	7	1204_1205	c.940_941CG>AT	c.(940-942)CGG>ATG	p.R314M	C2_uc003nyc.2_Missense_Mutation_p.R101M|C2_uc011doo.1_Missense_Mutation_p.R68M|C2_uc011dop.1_Intron|C2_uc010jtk.2_Missense_Mutation_p.R182M|C2_uc011doq.1_Missense_Mutation_p.R285M|C2_uc003nyg.2_Intron|CFB_uc011dor.1_Intron|C2_uc003nyh.1_5'Flank	NM_000063	NP_000054	P06681	CO2_HUMAN	complement component 2 isoform 1 preproprotein	314	VWFA.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space	serine-type endopeptidase activity			ovary(1)|skin(1)	2		Ovarian(999;0.00965)		LUAD - Lung adenocarcinoma(999;0.247)		CGACAACTCCCGGGATATGACT	0.505000													8	345					0	0	6.4e-05	0	0
BTNL2	56244	broad.mit.edu	37	6	32362724	32362724	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:32362724C>T	uc003obg.1	-	6	1157	c.1157G>A	c.(1156-1158)TGG>TAG	p.W386*	BTNL2_uc010jty.1_Nonsense_Mutation_p.W109*|BTNL2_uc010jtz.1_RNA|BTNL2_uc010jua.1_Nonsense_Mutation_p.W176*	NM_019602	NP_062548	Q9UIR0	BTNL2_HUMAN	butyrophilin-like 2	386	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1						CTGTGGGAACCACCCATCTGA	0.572000													17	138					0	0	0.000175454	0	0
PHF1	5252	broad.mit.edu	37	6	33382066	33382066	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:33382066A>T	uc003oeh.2	+	9	1035	c.799A>T	c.(799-801)AAG>TAG	p.K267*	PHF1_uc011drh.1_RNA|PHF1_uc003oei.2_Nonsense_Mutation_p.K267*|PHF1_uc010jux.2_Nonsense_Mutation_p.K67*	NM_024165	NP_077084	O43189	PHF1_HUMAN	PHD finger protein 1 isoform b	267					chromatin modification	nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0		Ovarian(999;0.0443)				TGTTTGCTGTAAGAAGAAATA	0.473000											OREG0017346	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	27	99					0	0	0.000878237	0	0
CDKN1A	1026	broad.mit.edu	37	6	36652070	36652070	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:36652070C>T	uc003omm.3	+	2	314	c.192C>T	c.(190-192)GCC>GCT	p.A64A	CDKN1A_uc011dtq.1_Silent_p.A98A|CDKN1A_uc003oml.2_Silent_p.A64A|CDKN1A_uc003omn.2_Silent_p.A64A	NM_000389	NP_000380	P38936	CDN1A_HUMAN	cyclin-dependent kinase inhibitor 1A	64					cell cycle arrest|cellular response to extracellular stimulus|cellular response to ionizing radiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|G2/M transition of mitotic cell cycle|induction of apoptosis by intracellular signals|negative regulation of cell growth|negative regulation of cell proliferation|positive regulation of fibroblast proliferation|positive regulation of reactive oxygen species metabolic process|Ras protein signal transduction|S phase of mitotic cell cycle|stress-induced premature senescence	cyclin-dependent protein kinase holoenzyme complex|cytosol|nucleoplasm|PCNA-p21 complex	cyclin-dependent protein kinase activating kinase activity|cyclin-dependent protein kinase inhibitor activity|metal ion binding			ovary(1)|breast(1)	2						GTGACTTCGCCTGGGAGCGTG	0.677000									Multiple_Endocrine_Neoplasia_type_1				7	25					0	0	8.12818e-05	0	0
CPNE5	57699	broad.mit.edu	37	6	36759867	36759867	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:36759867G>A	uc003omr.1	-	8	538	c.471C>T	c.(469-471)GTC>GTT	p.V157V	CPNE5_uc003oms.1_Silent_p.V136V	NM_020939	NP_065990	Q9HCH3	CPNE5_HUMAN	copine V	157	C2 2.									skin(1)	1						TCTTTCCTGGGACACCACTGG	0.567000													13	49					0	0	0.000422831	0	0
ZFAND3	60685	broad.mit.edu	37	6	38029439	38029439	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:38029439C>T	uc003onx.2	+	3	598	c.183C>T	c.(181-183)TCC>TCT	p.S61S		NM_021943	NP_068762	Q9H8U3	ZFAN3_HUMAN	zinc finger, AN1-type domain 3	61							DNA binding|zinc ion binding			ovary(1)	1						ATTTGTTTTCCGAAGAGACCA	0.433000													12	44					0	0	0.00010058	0	0
OPN5	221391	broad.mit.edu	37	6	47754302	47754302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:47754302G>A	uc003ozc.2	+	2	187	c.182G>A	c.(181-183)CGA>CAA	p.R61Q	OPN5_uc003ozd.2_5'Flank	NM_181744	NP_859528	Q6U736	OPN5_HUMAN	opsin 5 isoform 1	61	Cytoplasmic (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to membrane	G-protein coupled receptor activity|photoreceptor activity			ovary(1)	1						TCTTCTAGACGAAAGAAGAAG	0.378000													18	60					0	0	0.00074312	0	0
PGK2	5232	broad.mit.edu	37	6	49754181	49754181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:49754181C>T	uc003ozu.2	-	1	827	c.720G>A	c.(718-720)ATG>ATA	p.M240I		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	240					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					AGGTATAAGCCATTCCACCAC	0.428000													13	115					0	0	0.000308642	0	0
TRAM2	9697	broad.mit.edu	37	6	52370428	52370429	+	Nonsense_Mutation	DNP	CG	AT	AT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:52370428_52370429CG>AT	uc003paq.2	-	9	992_993	c.843_844CG>AT	c.(841-846)CCCGAG>CCATAG	p.E282*	EFHC1_uc011dwv.1_Intron|TRAM2_uc003par.1_RNA	NM_012288	NP_036420	Q15035	TRAM2_HUMAN	translocation-associated membrane protein 2	282	TLC.				collagen biosynthetic process|protein transport|transmembrane transport	integral to membrane	protein binding				0	Lung NSC(77;0.109)					TTCCCTTTCTCGGGATCAAATG	0.545000													5	134					0	0	6.4e-05	0	0
FILIP1	27145	broad.mit.edu	37	6	76063289	76063289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:76063289C>T	uc003pia.2	-	4	968	c.595G>A	c.(595-597)GAC>AAC	p.D199N	FILIP1_uc003phy.1_Missense_Mutation_p.D199N|FILIP1_uc003phz.2_Missense_Mutation_p.D100N|FILIP1_uc010kbe.2_Missense_Mutation_p.D202N	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	199	Potential.									skin(3)|ovary(1)	4						TTGGTGAAGTCGTCGCTCTTG	0.537000													18	129					0	0	0.000958276	0	0
CYB5R4	51167	broad.mit.edu	37	6	84669579	84669579	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:84669579C>T	uc003pkf.2	+	16	1680	c.1548C>T	c.(1546-1548)ATC>ATT	p.I516I		NM_016230	NP_057314	Q7L1T6	NB5R4_HUMAN	cytochrome b5 reductase 4	516					cell development|detection of oxygen|generation of precursor metabolites and energy|glucose homeostasis|insulin secretion|response to antibiotic|superoxide metabolic process	endoplasmic reticulum|perinuclear region of cytoplasm	cytochrome-b5 reductase activity|heme binding|NAD(P)H oxidase activity			breast(2)	2		all_cancers(76;7e-07)|Acute lymphoblastic leukemia(125;2.69e-07)|all_hematologic(105;0.000151)|all_epithelial(107;0.00128)		BRCA - Breast invasive adenocarcinoma(397;0.0871)		AAAATGAGATCCATAGTTTTA	0.303000													5	29					0	0	0.000602214	0	0
SYNCRIP	10492	broad.mit.edu	37	6	86324795	86324795	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:86324795G>A	uc003pla.2	-	11	2092	c.1551C>T	c.(1549-1551)CCC>CCT	p.P517P	SYNCRIP_uc003pku.2_Silent_p.P517P|SYNCRIP_uc003pkw.2_Silent_p.P482P|SYNCRIP_uc003pky.2_Silent_p.P419P|SYNCRIP_uc003pkv.2_Silent_p.P517P|SYNCRIP_uc003pkx.2_Silent_p.P365P|SYNCRIP_uc003pkz.2_Silent_p.P482P	NM_006372	NP_006363	O60506	HNRPQ_HUMAN	synaptotagmin binding, cytoplasmic RNA	517	Interaction with APOBEC1.|8 X 3 AA repeats of R-G-G.				CRD-mediated mRNA stabilization|interspecies interaction between organisms	catalytic step 2 spliceosome|CRD-mediated mRNA stability complex|endoplasmic reticulum|histone pre-mRNA 3'end processing complex|microsome|nucleoplasm	nucleotide binding|protein binding			ovary(2)	2		all_cancers(76;0.000137)|Acute lymphoblastic leukemia(125;3.66e-08)|Prostate(29;8.2e-07)|all_hematologic(105;8.61e-05)|all_epithelial(107;0.0297)		BRCA - Breast invasive adenocarcinoma(108;0.0389)		CTCTACCGCGGGGAGGAGCAG	0.577000													15	70					0	0	0.00074312	0	0
ARMC2	84071	broad.mit.edu	37	6	109282894	109282894	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:109282894G>A	uc003pss.3	+	14	2209	c.2035G>A	c.(2035-2037)GAA>AAA	p.E679K	ARMC2_uc011eao.1_Missense_Mutation_p.E514K	NM_032131	NP_115507	Q8NEN0	ARMC2_HUMAN	armadillo repeat containing 2	679	ARM 10.						binding				0		all_cancers(87;1.14e-07)|Acute lymphoblastic leukemia(125;2.3e-10)|all_hematologic(75;3.3e-08)|all_epithelial(87;0.000111)|Colorectal(196;0.03)|all_lung(197;0.11)		Epithelial(106;0.000197)|BRCA - Breast invasive adenocarcinoma(108;0.000236)|all cancers(137;0.000279)|OV - Ovarian serous cystadenocarcinoma(136;0.00434)		ATATATTGCTGAATGTAAGGT	0.353000													15	105					0	0	0.000308642	0	0
RSPH4A	345895	broad.mit.edu	37	6	116937862	116937862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:116937862G>A	uc003pxe.2	+	1	221	c.76G>A	c.(76-78)GGA>AGA	p.G26R	RSPH4A_uc010kee.2_Missense_Mutation_p.G26R	NM_001010892	NP_001010892	Q5TD94	RSH4A_HUMAN	radial spoke head 4 homolog A isoform 1	26					cilium axoneme assembly|cilium movement	cytoplasm|cytoskeleton|radial spoke					0						GCCATGGGAAGGAAAGACAGC	0.527000									Kartagener_syndrome				5	23					0	0	3.59834e-05	0	0
GPRC6A	222545	broad.mit.edu	37	6	117130602	117130602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:117130602C>T	uc003pxj.1	-	2	395	c.373G>A	c.(373-375)GAA>AAA	p.E125K	GPRC6A_uc003pxk.1_Missense_Mutation_p.E125K|GPRC6A_uc003pxl.1_Missense_Mutation_p.E125K	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	125	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TCCACAGTTTCTCTGGAGCAG	0.438000													11	70					0	0	0.000978159	0	0
ASF1A	25842	broad.mit.edu	37	6	119222019	119222019	+	Silent	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:119222019C>G	uc011ebn.1	+	2	535	c.198C>G	c.(196-198)CCC>CCG	p.P66P		NM_014034	NP_054753	Q9Y294	ASF1A_HUMAN	ASF1 anti-silencing function 1 homolog A	66	Interaction with histone H3, CHAF1B, and HIRA.				chromatin modification|DNA repair|loss of chromatin silencing|nucleosome assembly|transcription, DNA-dependent	chromatin remodeling complex	chromatin binding|histone binding				0		all_cancers(87;0.122)|all_epithelial(87;0.179)		GBM - Glioblastoma multiforme(226;0.0633)|OV - Ovarian serous cystadenocarcinoma(136;0.188)		GTCCTGTTCCCGCAGGAAGGC	0.348000													4	220					0	0	0.000602214	0	0
LAMA2	3908	broad.mit.edu	37	6	129704350	129704350	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:129704350C>T	uc003qbn.2	+	35	5148	c.5043C>T	c.(5041-5043)TTC>TTT	p.F1681F	LAMA2_uc003qbo.2_Silent_p.F1681F	NM_000426	NP_000417	P24043	LAMA2_HUMAN	laminin alpha 2 subunit isoform a precursor	1681	Domain II and I.|Potential.				cell adhesion|muscle organ development|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	laminin-1 complex	receptor binding|structural molecule activity			ovary(8)|breast(1)|skin(1)	10				OV - Ovarian serous cystadenocarcinoma(136;0.178)|all cancers(137;0.245)		TGGGAGAATTCATTAAGGAGC	0.458000													6	66					0	0	8.12818e-05	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762690	130762690	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:130762690C>T	uc003qca.2	+	3	1994	c.1123C>T	c.(1123-1125)CCT>TCT	p.P375S	TMEM200A_uc010kfh.2_Missense_Mutation_p.P375S|TMEM200A_uc010kfi.2_Missense_Mutation_p.P375S|TMEM200A_uc003qcb.2_Missense_Mutation_p.P375S	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	375	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		GCTCTTGTCTCCTGGGGCTGC	0.527000													5	35					0	0	0.000602214	0	0
HECA	51696	broad.mit.edu	37	6	139488178	139488178	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:139488178C>T	uc003qin.2	+	2	1314	c.1029C>T	c.(1027-1029)TTC>TTT	p.F343F		NM_016217	NP_057301	Q9UBI9	HDC_HUMAN	headcase	343					respiratory tube development						0				GBM - Glioblastoma multiforme(68;0.000252)|OV - Ovarian serous cystadenocarcinoma(155;0.000387)		CCGTGCAGTTCCTTCGGCGGC	0.602000													10	47					0	0	0.00010058	0	0
RMND1	55005	broad.mit.edu	37	6	151738425	151738425	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:151738425G>A	uc003qoi.2	-	10	1369	c.1189C>T	c.(1189-1191)CGA>TGA	p.R397*	RMND1_uc011eeq.1_Nonsense_Mutation_p.R186*	NM_017909	NP_060379	Q9NWS8	RMND1_HUMAN	required for meiotic nuclear division 1 homolog	397											0		Ovarian(120;0.125)	BRCA - Breast invasive adenocarcinoma(37;0.146)	OV - Ovarian serous cystadenocarcinoma(155;6.8e-11)		TTAACTCTTCGGCCAATGCTA	0.383000													6	102					0	0	3.59834e-05	0	0
SYNE1	23345	broad.mit.edu	37	6	152685982	152685982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:152685982C>T	uc010kiw.2	-	63	10747	c.10145G>A	c.(10144-10146)AGC>AAC	p.S3382N	SYNE1_uc003qot.3_Missense_Mutation_p.S3389N|SYNE1_uc003qou.3_Missense_Mutation_p.S3382N|SYNE1_uc010kja.1_Missense_Mutation_p.S87N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	3382	Spectrin 7.|HAT 6.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTTCCCTCACCTTTTACAACG	0.428000										HNSCC(10;0.0054)			7	81					0	0	0.000157383	0	0
FNDC1	84624	broad.mit.edu	37	6	159618564	159618564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr6:159618564G>A	uc010kjv.2	+	2	411	c.211G>A	c.(211-213)GAG>AAG	p.E71K	FNDC1_uc010kjw.1_Missense_Mutation_p.E19K	NM_032532	NP_115921	Q4ZHG4	FNDC1_HUMAN	fibronectin type III domain containing 1	71	Fibronectin type-III 1.					extracellular region				large_intestine(4)|ovary(3)|central_nervous_system(1)	8		Breast(66;0.000781)|Ovarian(120;0.0308)|Prostate(117;0.195)		OV - Ovarian serous cystadenocarcinoma(65;2.6e-16)|BRCA - Breast invasive adenocarcinoma(81;1.06e-05)		TAGACCTGTGGAGCATTACAA	0.473000													31	114					0	0	0.000279167	0	0
THSD7A	221981	broad.mit.edu	37	7	11450910	11450910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:11450910C>T	uc003ssf.3	-	18	3974	c.3722G>A	c.(3721-3723)GGA>GAA	p.G1241E		NM_015204	NP_056019	Q9UPZ6	THS7A_HUMAN	thrombospondin, type I, domain containing 7A	1241	TSP type-1 12.|Extracellular (Potential).					integral to membrane				ovary(3)	3				UCEC - Uterine corpus endometrioid carcinoma (126;0.163)		TATTCCATTTCCACAAACTGC	0.403000										HNSCC(18;0.044)			13	75					0	0	0.000219431	0	0
C7orf46	340277	broad.mit.edu	37	7	23731110	23731110	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:23731110C>T	uc003swo.3	+	4	621	c.532C>T	c.(532-534)CAG>TAG	p.Q178*	C7orf46_uc003swq.3_Nonsense_Mutation_p.Q178*|C7orf46_uc003swr.3_Nonsense_Mutation_p.Q120*|C7orf46_uc003swp.3_RNA|C7orf46_uc010kup.2_RNA	NM_199136	NP_954587	A4D161	CG046_HUMAN	hypothetical protein LOC340277 isoform 1	178											0						AAGATTGGCTCAGGAAAAACC	0.493000													23	120					0	0	0.000375601	0	0
HOXA1	3198	broad.mit.edu	37	7	27134177	27134178	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:27134177_27134178GG>AA	uc003sye.2	-	2	983_984	c.889_890CC>TT	c.(889-891)CCG>TTG	p.P297L	HOXA1_uc003syd.2_3'UTR|uc003syg.2_5'Flank	NM_005522	NP_005513	P49639	HXA1_HUMAN	homeobox A1 isoform a	297						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)	3						CGGGGTGGCCGGAGAGATGGGC	0.574000													10	46					0	0	6.4e-05	0	0
HIBADH	11112	broad.mit.edu	37	7	27689129	27689130	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:27689129_27689130GG>TT	uc003szf.2	-	2	409_410	c.214_215CC>AA	c.(214-216)CCT>AAT	p.P72N	HIBADH_uc003szg.2_Missense_Mutation_p.P23N|HIBADH_uc003szh.2_Intron|HIBADH_uc003szi.2_Missense_Mutation_p.P23N	NM_152740	NP_689953	P31937	3HIDH_HUMAN	3-hydroxyisobutyrate dehydrogenase precursor	72					branched chain family amino acid catabolic process|pentose-phosphate shunt|valine metabolic process	mitochondrial matrix	3-hydroxyisobutyrate dehydrogenase activity|NAD binding|phosphogluconate dehydrogenase (decarboxylating) activity			ovary(2)	2			GBM - Glioblastoma multiforme(3;0.0368)		NADH(DB00157)	GCAGGCATCAGGGAACACATCA	0.356000													14	561					0	0	6.4e-05	0	0
NOD1	10392	broad.mit.edu	37	7	30492184	30492184	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:30492184G>A	uc003tav.2	-	6	1372	c.849C>T	c.(847-849)TTC>TTT	p.F283F	NOD1_uc010kvs.2_Missense_Mutation_p.S238L	NM_006092	NP_006083	Q9Y239	NOD1_HUMAN	nucleotide-binding oligomerization domain	283	NACHT.				activation of MAPK activity|detection of bacterium|induction of apoptosis|inflammatory response|innate immune response|interleukin-8 biosynthetic process|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of dendritic cell antigen processing and presentation|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|protein oligomerization|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	basolateral plasma membrane|cytosol	ATP binding|CARD domain binding|caspase activator activity|peptidoglycan binding|protein homodimerization activity			ovary(1)|skin(1)	2						CCAGGCCATCGAAGGTGAAGA	0.657000													17	36					0	0	0.000422831	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146129	31146129	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:31146129G>A	uc003tca.1	+	16	1461	c.1238G>A	c.(1237-1239)CGA>CAA	p.R413Q	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.R392Q|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.R441Q|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.R441Q|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.R440Q|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	413	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GAGATCAAGCGAAAATGGCGA	0.612000													10	21					0	0	0.000673444	0	0
NPSR1	387129	broad.mit.edu	37	7	34698124	34698124	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:34698124G>A	uc003teg.1	+	1	228	c.100G>A	c.(100-102)GAA>AAA	p.E34K	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.E34K|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.E34K|NPSR1_uc003tei.1_Missense_Mutation_p.E34K|NPSR1_uc010kww.1_Missense_Mutation_p.E34K|NPSR1_uc011kar.1_Missense_Mutation_p.E34K	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	34	Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	GACTTTTACTGAAGTGGTGGA	0.498000													24	49					0	0	0.000375601	0	0
GPR141	353345	broad.mit.edu	37	7	37780105	37780105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:37780105C>T	uc003tfm.1	+	1	110	c.110C>T	c.(109-111)TCC>TTC	p.S37F	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	37	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						GGTGTCATTTCCATTCTTTTC	0.498000													8	75					0	0	0.000157383	0	0
HECW1	23072	broad.mit.edu	37	7	43484933	43484933	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:43484933C>T	uc003tid.1	+	11	2767	c.2162C>T	c.(2161-2163)TCC>TTC	p.S721F	HECW1_uc011kbi.1_Missense_Mutation_p.S721F	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	721					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CGCTTCTCCTCCGTGGACAGC	0.622000													18	38					0	0	0.00074312	0	0
TNS3	64759	broad.mit.edu	37	7	47336690	47336690	+	Silent	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:47336690C>G	uc003tnv.2	-	24	4033	c.3666G>C	c.(3664-3666)CTG>CTC	p.L1222L	TNS3_uc003tnw.2_Silent_p.L1222L	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	1222	SH2.					focal adhesion	protein binding			ovary(4)	4						CTTTCTTGTTCAGCTGCAGGA	0.488000													16	106					0	0	0.00074312	0	0
DDC	1644	broad.mit.edu	37	7	50611613	50611613	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:50611613G>A	uc003tpf.3	-	2	257	c.171C>T	c.(169-171)ATC>ATT	p.I57I	DDC_uc010kza.2_Silent_p.I57I|DDC_uc003tpg.3_Silent_p.I57I	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	57					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	CAACGTCGTTGATGATGTCCT	0.542000													14	101					0	0	0.000219431	0	0
COBL	23242	broad.mit.edu	37	7	51097008	51097008	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:51097008C>T	uc003tpr.3	-	10	1970	c.1785G>A	c.(1783-1785)GAG>GAA	p.E595E	COBL_uc003tps.2_Silent_p.E652E|COBL_uc011kcl.1_Silent_p.E595E|COBL_uc003tpp.3_Silent_p.E381E|COBL_uc003tpq.3_Silent_p.E536E|COBL_uc003tpo.3_Silent_p.E137E	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	595										skin(3)|ovary(2)	5	Glioma(55;0.08)					CAGGTACTTCCTCCCTTGCCT	0.557000													9	34					0	0	0.000442599	0	0
SUMF2	25870	broad.mit.edu	37	7	56136221	56136222	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:56136221_56136222CC>TT	uc003trv.2	+	2	202_203	c.171_172CC>TT	c.(169-174)TTCCTG>TTTTTG	p.57_58FL>FL	PSPH_uc003trj.2_Intron|SUMF2_uc003tro.2_Silent_p.57_58FL>FL|SUMF2_uc011kcv.1_RNA|SUMF2_uc011kcw.1_Silent_p.57_58FL>FL|SUMF2_uc011kcx.1_Silent_p.57_58FL>FL|SUMF2_uc003trt.2_Intron|SUMF2_uc011kcy.1_Silent_p.57_58FL>FL|SUMF2_uc011kcz.1_Silent_p.57_58FL>FL|SUMF2_uc003tru.2_RNA|SUMF2_uc011kda.1_5'UTR|SUMF2_uc003trx.2_RNA	NM_001130069	NP_001123541	Q8NBJ7	SUMF2_HUMAN	sulfatase modifying factor 2 isoform e	38_39						endoplasmic reticulum lumen	metal ion binding			ovary(1)|skin(1)	2	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			GTGGGAGATTCCTGATGGGAAC	0.470000													8	47					0	0	6.4e-05	0	0
FAM133B	257415	broad.mit.edu	37	7	92207462	92207462	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:92207462A>C	uc003umc.2	-	5	410	c.309_splice	c.e5+1	p.R103_splice	FAM133B_uc003umb.2_Splice_Site_p.R93_splice|FAM133B_uc003umd.2_Splice_Site	NM_152789	NP_690002	Q5BKY9	F133B_HUMAN	hypothetical protein LOC257415 isoform 1											ovary(1)	1	all_cancers(62;7.39e-11)|all_epithelial(64;7.03e-10)|Breast(17;0.00201)|all_lung(186;0.0384)|Lung NSC(181;0.053)|all_hematologic(106;0.237)		STAD - Stomach adenocarcinoma(4;6.16e-07)|GBM - Glioblastoma multiforme(5;9.78e-06)|all cancers(6;1.67e-05)|Epithelial(20;0.113)|LUSC - Lung squamous cell carcinoma(200;0.225)|Lung(22;0.23)			ATTTTTGCTCACCCTACCAGA	0.303000													11	41					0	0	0.000978159	0	0
CALCR	799	broad.mit.edu	37	7	93101751	93101751	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:93101751G>A	uc003umv.1	-	6	680	c.419C>T	c.(418-420)CCT>CTT	p.P140L	CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Missense_Mutation_p.P122L|CALCR_uc003umw.2_Missense_Mutation_p.P122L	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	122	Extracellular (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	ATTGTTTTCAGGATGTTTAAA	0.343000													14	93					0	0	0.000219431	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94881390	94881390	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:94881390C>T	uc003unp.2	+	11	2829	c.2547C>T	c.(2545-2547)ACC>ACT	p.T849T	PPP1R9A_uc010lfj.2_Silent_p.T871T|PPP1R9A_uc011kif.1_Silent_p.T849T|PPP1R9A_uc003unq.2_Silent_p.T849T|PPP1R9A_uc011kig.1_Silent_p.T849T	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	849	Interacts with TGN38 (By similarity).					cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AAGGGGATACCATGGAGAACT	0.388000										HNSCC(28;0.073)			4	39					0	0	3.59834e-05	0	0
CYP3A4	1576	broad.mit.edu	37	7	99366043	99366043	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:99366043G>A	uc003urv.1	-	7	708	c.604C>T	c.(604-606)CCC>TCC	p.P202S	CYP3A4_uc003urw.1_Missense_Mutation_p.P202S|CYP3A4_uc011kiz.1_Missense_Mutation_p.P161S|CYP3A4_uc011kja.1_Missense_Mutation_p.P153S|CYP3A4_uc011kjb.1_Missense_Mutation_p.P52S	NM_017460	NP_059488	P08684	CP3A4_HUMAN	cytochrome P450, family 3, subfamily A,	202					alkaloid catabolic process|androgen metabolic process|exogenous drug catabolic process|heterocycle metabolic process|monoterpenoid metabolic process|oxidative demethylation|steroid catabolic process|xenobiotic metabolic process	cell surface|endoplasmic reticulum membrane|integral to membrane|microsome	albendazole monooxygenase activity|caffeine oxidase activity|electron carrier activity|enzyme binding|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen|oxygen binding|quinine 3-monooxygenase activity|steroid binding|taurochenodeoxycholate 6alpha-hydroxylase activity|testosterone 6-beta-hydroxylase activity|vitamin D 24-hydroxylase activity|vitamin D3 25-hydroxylase activity			central_nervous_system(3)|ovary(1)	4	Lung NSC(181;0.0144)|Esophageal squamous(72;0.0166)|all_lung(186;0.0228)				Albendazole(DB00518)|Alclometasone(DB00240)|Alfentanil(DB00802)|Alfuzosin(DB00346)|Aliskiren(DB01258)|Almotriptan(DB00918)|Alosetron(DB00969)|Alprazolam(DB00404)|Amlodipine(DB00381)|Amprenavir(DB00701)|Aprepitant(DB00673)|Aripiprazole(DB01238)|Astemizole(DB00637)|Atazanavir(DB01072)|Atorvastatin(DB01076)|Benazepril(DB00542)|Bepridil(DB01244)|Betamethasone(DB00443)|Bexarotene(DB00307)|Bortezomib(DB00188)|Bosentan(DB00559)|Bromocriptine(DB01200)|Budesonide(DB01222)|Bupivacaine(DB00297)|Buprenorphine(DB00921)|Buspirone(DB00490)|Busulfan(DB01008)|Carbamazepine(DB00564)|Cevimeline(DB00185)|Chlorpheniramine(DB01114)|Ciclesonide(DB01410)|Cilostazol(DB01166)|Cinacalcet(DB01012)|Cisapride(DB00604)|Clarithromycin(DB01211)|Clindamycin(DB01190)|Clofibrate(DB00636)|Clonazepam(DB01068)|Clopidogrel(DB00758)|Cocaine(DB00907)|Conivaptan(DB00872)|Conjugated Estrogens(DB00286)|Cyproterone(DB04839)|Darifenacin(DB00496)|Darunavir(DB01264)|Dasatinib(DB01254)|Delavirdine(DB00705)|Desogestrel(DB00304)|Dexamethasone(DB01234)|Diazepam(DB00829)|Dihydroergotamine(DB00320)|Diltiazem(DB00343)|Diphenhydramine(DB01075)|Disopyramide(DB00280)|Dofetilide(DB00204)|Dolasetron(DB00757)|Domperidone(DB01184)|Donepezil(DB00843)|Doxorubicin(DB00997)|Drospirenone(DB01395)|Dutasteride(DB01126)|Efavirenz(DB00625)|Eletriptan(DB00216)|Enalapril(DB00584)|Epirubicin(DB00445)|Eplerenone(DB00700)|Ergotamine(DB00696)|Erlotinib(DB00530)|Erythromycin(DB00199)|Escitalopram(DB01175)|Esomeprazole(DB00736)|Estazolam(DB01215)|Eszopiclone(DB00402)|Ethinyl Estradiol(DB00977)|Ethosuximide(DB00593)|Etonogestrel(DB00294)|Etoposide(DB00773)|Etoricoxib(DB01628)|Exemestane(DB00990)|Felodipine(DB01023)|Fentanyl(DB00813)|Fexofenadine(DB00950)|Finasteride(DB01216)|Fluconazole(DB00196)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Fosamprenavir(DB01319)|Fulvestrant(DB00947)|Galantamine(DB00674)|Gefitinib(DB00317)|Gemfibrozil(DB01241)|Granisetron(DB00889)|Grepafloxacin(DB00365)|Halofantrine(DB01218)|Hydrocodone(DB00956)|Hydrocortamate(DB00769)|Hydrocortisone(DB00741)|Hydromorphone(DB00327)|Imatinib(DB00619)|Indinavir(DB00224)|Ipratropium(DB00332)|Irinotecan(DB00762)|Isosorbide Dinitrate(DB00883)|Isosorbide Mononitrate(DB01020)|Isradipine(DB00270)|Itraconazole(DB01167)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lercanidipine(DB00528)|Letrozole(DB01006)|Levobupivacaine(DB01002)|Levomethadyl Acetate(DB01227)|Levothyroxine(DB00451)|Lomustine(DB01206)|Loperamide(DB00836)|Lopinavir(DB01601)|Loratadine(DB00455)|Losartan(DB00678)|Lovastatin(DB00227)|Maraviroc(DB04835)|Marinol(DB00470)|Mebendazole(DB00643)|Medroxyprogesterone(DB00603)|Methadone(DB00333)|Methylprednisolone(DB00959)|Metyrapone(DB01011)|Mibefradil(DB01388)|Midazolam(DB00683)|Mifepristone(DB00834)|Mirtazapine(DB00370)|Modafinil(DB00745)|Mometasone(DB00764)|Montelukast(DB00471)|Nateglinide(DB00731)|Nefazodone(DB01149)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicardipine(DB00622)|Nifedipine(DB01115)|Nimodipine(DB00393)|Nisoldipine(DB00401)|Nitrendipine(DB01054)|Norethindrone(DB00717)|Norgestrel(DB00506)|Nystatin(DB00646)|Ondansetron(DB00904)|Oxybutynin(DB01062)|Paclitaxel(DB01229)|Paliperidone(DB01267)|Palonosetron(DB00377)|Pantoprazole(DB00213)|Paricalcitol(DB00910)|Phenmetrazine(DB00830)|Pimecrolimus(DB00337)|Pimozide(DB01100)|Pioglitazone(DB01132)|Posaconazole(DB01263)|Pranlukast(DB01411)|Prednisolone(DB00860)|Prednisone(DB00635)|Prochlorperazine(DB00433)|Quetiapine(DB01224)|Quinapril(DB00881)|Quinine(DB00468)|Rabeprazole(DB01129)|Ranolazine(DB00243)|Reboxetine(DB00234)|Retapamulin(DB01256)|Rifabutin(DB00615)|Rifampin(DB01045)|Rimonabant(DB06155)|Ritonavir(DB00503)|Rofecoxib(DB00533)|Roxithromycin(DB00778)|Salmeterol(DB00938)|Saquinavir(DB01232)|Sertindole(DB06144)|Sibutramine(DB01105)|Simvastatin(DB00641)|Sirolimus(DB00877)|Sitagliptin(DB01261)|Solifenacin(DB01591)|Sorafenib(DB00398)|Sunitinib(DB01268)|Tacrolimus(DB00864)|Tadalafil(DB00820)|Tamoxifen(DB00675)|Telithromycin(DB00976)|Terconazole(DB00251)|Terfenadine(DB00342)|Testosterone(DB00624)|Tiagabine(DB00906)|Ticlopidine(DB00208)|Tinidazole(DB00911)|Tiotropium(DB01409)|Tipranavir(DB00932)|Toremifene(DB00539)|Triazolam(DB00897)|Trimetrexate(DB01157)|Troglitazone(DB00197)|Valdecoxib(DB00580)|Vardenafil(DB00862)|Vinblastine(DB00570)|Vincristine(DB00541)|Vindesine(DB00309)|Vinorelbine(DB00361)|Voriconazole(DB00582)|Zaleplon(DB00962)|Zileuton(DB00744)|Ziprasidone(DB00246)|Zolpidem(DB00425)|Zonisamide(DB00909)	TCCACAAAGGGGTCTTGTGGA	0.393000													13	62					0	0	0.000219431	0	0
ZAN	7455	broad.mit.edu	37	7	100352875	100352875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:100352875G>A	uc003uwj.2	+	15	3316	c.3151G>A	c.(3151-3153)GAA>AAA	p.E1051K	ZAN_uc003uwk.2_Missense_Mutation_p.E1051K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1051	TIL 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TGCCCGCTACGAATCCTGTGC	0.567000													20	95					0	0	0.000175454	0	0
PIK3CG	5294	broad.mit.edu	37	7	106509477	106509477	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:106509477G>A	uc003vdv.3	+	2	1556	c.1471G>A	c.(1471-1473)GGA>AGA	p.G491R	PIK3CG_uc003vdu.2_Missense_Mutation_p.G491R|PIK3CG_uc003vdw.2_Missense_Mutation_p.G491R	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	491					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding	p.G491E(1)|p.G491V(1)		lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						ATCTGGGAAGGGAGAAGACCA	0.483000													15	53					0	0	0.000566183	0	0
SPAM1	6677	broad.mit.edu	37	7	123594264	123594264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:123594264C>T	uc003vld.2	+	4	1042	c.640C>T	c.(640-642)CAC>TAC	p.H214Y	SPAM1_uc003vle.2_Missense_Mutation_p.H214Y|SPAM1_uc011koa.1_5'Flank|SPAM1_uc003vlf.3_Missense_Mutation_p.H214Y|SPAM1_uc010lku.2_Missense_Mutation_p.H214Y	NM_153189	NP_694859	P38567	HYALP_HUMAN	sperm adhesion molecule 1 isoform 2	214					binding of sperm to zona pellucida|carbohydrate metabolic process|cell adhesion|fusion of sperm to egg plasma membrane	anchored to membrane|plasma membrane	hyalurononglucosaminidase activity			ovary(3)|kidney(1)	4					Hyaluronidase(DB00070)	TCGGCCAAATCACTTGTGGGG	0.373000													19	75					0	0	0.000958276	0	0
TNPO3	23534	broad.mit.edu	37	7	128645159	128645159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:128645159G>A	uc003vol.1	-	5	981	c.607C>T	c.(607-609)CGC>TGC	p.R203C	TNPO3_uc003vom.1_Missense_Mutation_p.R137C|TNPO3_uc010lly.1_Missense_Mutation_p.R203C|TNPO3_uc010llz.1_Missense_Mutation_p.R203C	NM_012470	NP_036602	Q9Y5L0	TNPO3_HUMAN	transportin 3	203					splicing factor protein import into nucleus	cytoplasm|nucleus	protein binding|receptor activity			ovary(2)|skin(2)|lung(1)	5						CCCAAACAGCGAAAAACCTTC	0.323000													42	84					0	0	0.000680045	0	0
NRF1	4899	broad.mit.edu	37	7	129357144	129357144	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:129357144C>T	uc003voz.2	+	9	1268	c.1151C>T	c.(1150-1152)TCG>TTG	p.S384L	NRF1_uc003vpa.2_Missense_Mutation_p.S384L|NRF1_uc011kpa.1_Missense_Mutation_p.S223L|NRF1_uc003vpb.2_Missense_Mutation_p.S384L	NM_005011	NP_005002	Q16656	NRF1_HUMAN	nuclear respiratory factor 1	384	Required for transcriptional activation.				generation of precursor metabolites and energy|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1						GCGGTGGCATCGTTGGCAGAG	0.567000													22	46					0	0	0.00047179	0	0
COPG2	26958	broad.mit.edu	37	7	130147184	130147185	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:130147184_130147185CC>AA	uc003vqh.1	-	13	2505_2506	c.2415_2416GG>TT	c.(2413-2418)CTGGGC>CTTTGC	p.G806C		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2	806					intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					GGCTGCATGCCCAGAAATGTGA	0.446000													12	635					0	0	6.4e-05	0	0
COPG2	26958	broad.mit.edu	37	7	130295969	130295970	+	Nonsense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:130295969_130295970CC>AA	uc003vqh.1	-	9	681_682	c.591_592GG>TT	c.(589-594)TTGGGA>TTTTGA	p.197_198LG>F*		NM_012133	NP_036265	Q9UBF2	COPG2_HUMAN	coatomer protein complex, subunit gamma 2	197_198					intra-Golgi vesicle-mediated transport|intracellular protein transport|retrograde vesicle-mediated transport, Golgi to ER	COPI vesicle coat	protein binding|structural molecule activity				0	Melanoma(18;0.0435)					TACAGGACTCCCAATGCATGGT	0.342000													13	511					0	0	6.4e-05	0	0
TSGA13	114960	broad.mit.edu	37	7	130364052	130364053	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:130364052_130364053GG>TT	uc003vqi.2	-	5	784_785	c.327_328CC>AA	c.(325-330)ACCCAG>ACAAAG	p.Q110K	TSGA13_uc003vqj.2_Missense_Mutation_p.Q110K	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	110										ovary(2)	2	Melanoma(18;0.0435)					TTGTCTTGCTGGGTGATTGAGC	0.436000													13	702					0	0	6.4e-05	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				21	78					0	0	0.000375601	0	0
BRAF	673	broad.mit.edu	37	7	140500189	140500190	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:140500189_140500190GG>AA	uc003vwc.3	-	7	1013_1014	c.952_953CC>TT	c.(952-954)CCT>TTT	p.P318F		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	318					activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding		KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	GGGTGCGGAAGGGGATGATCCA	0.500000		61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				22	92					0	0	6.4e-05	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146805303	146805303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:146805303G>A	uc003weu.1	+	5	1131	c.615G>A	c.(613-615)ATG>ATA	p.M205I		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	205	Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ACAAGAAGATGAAAACACTGA	0.368000										HNSCC(39;0.1)			32	79					0	0	0.000409698	0	0
ATG9B	285973	broad.mit.edu	37	7	150720577	150720577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:150720577C>T	uc011kvc.1	-	3	690	c.614G>A	c.(613-615)CGG>CAG	p.R205Q	ATG9B_uc003wig.3_RNA	NM_173681	NP_775952	Q674R7	ATG9B_HUMAN	ATG9 autophagy related 9 homolog B	205	Cytoplasmic (By similarity).				autophagic vacuole assembly	autophagic vacuole membrane|cytoplasmic vesicle|integral to membrane				ovary(1)	1	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAAGCCATTCCGCTGGTGGTA	0.632000													4	8					0	0	0.00024832	0	0
MLL3	58508	broad.mit.edu	37	7	151944996	151944996	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:151944996C>T	uc003wla.2	-	14	2742	c.2523G>A	c.(2521-2523)CGG>CGA	p.R841R		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	841					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		CCTGTTTGGACCGAGGTCTAC	0.378000			N		medulloblastoma								9	251					0	0	0.000978159	0	0
CSMD1	64478	broad.mit.edu	37	8	3216823	3216823	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:3216823G>A	uc011kwk.1	-	21	3548	c.3158C>T	c.(3157-3159)GCC>GTC	p.A1053V	CSMD1_uc011kwj.1_Missense_Mutation_p.A445V|CSMD1_uc003wqe.2_Missense_Mutation_p.A209V	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1053	Sushi 6.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TCGGCTGAAGGCAGGGACTCC	0.463000													7	41					0	0	0.000157383	0	0
CSMD1	64478	broad.mit.edu	37	8	3256965	3256965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:3256965C>T	uc011kwk.1	-	16	2746	c.2356G>A	c.(2356-2358)GAA>AAA	p.E786K	CSMD1_uc011kwj.1_Missense_Mutation_p.E178K	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	786	Extracellular (Potential).|CUB 5.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATTATCCATTCACAATGTAAA	0.408000													11	100					0	0	0.000978159	0	0
BLK	640	broad.mit.edu	37	8	11407687	11407688	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:11407687_11407688GG>AA	uc003wty.2	+	6	969_970	c.388_389GG>AA	c.(388-390)GGT>AAT	p.G130N	BLK_uc003wtz.2_Missense_Mutation_p.G59N	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	130	SH2.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		TAGATCACAGGGTCGGAAGGAG	0.540000													16	92					0	0	6.4e-05	0	0
EFHA2	286097	broad.mit.edu	37	8	16921659	16921659	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:16921659C>T	uc003wxd.2	+	2	490	c.448C>T	c.(448-450)CGT>TGT	p.R150C		NM_181723	NP_859074	Q86XE3	EFHA2_HUMAN	EF-hand domain family, member A2	150						integral to membrane	calcium ion binding			skin(1)	1				Colorectal(111;0.0686)|COAD - Colon adenocarcinoma(73;0.239)		GAGGCGATTTCGTTTATTTGC	0.383000													15	99					0	0	0.000219431	0	0
NAT2	10	broad.mit.edu	37	8	18258334	18258334	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:18258334C>T	uc003wyw.1	+	2	928	c.821C>T	c.(820-822)TCC>TTC	p.S274F		NM_000015	NP_000006	P11245	ARY2_HUMAN	N-acetyltransferase 2	274					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity			ovary(1)|skin(1)	2				Colorectal(111;0.0531)|COAD - Colon adenocarcinoma(73;0.21)		TTTAAGATTTCCTTGGGGAGA	0.323000									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				18	89					0	0	0.000229342	0	0
ELP3	55140	broad.mit.edu	37	8	27965461	27965461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:27965461G>A	uc003xgo.3	+	5	509	c.361G>A	c.(361-363)GAG>AAG	p.E121K	ELP3_uc003xgn.3_Missense_Mutation_p.E106K|ELP3_uc011laq.1_Missense_Mutation_p.E49K|ELP3_uc011lar.1_Missense_Mutation_p.E29K|ELP3_uc011las.1_Intron|ELP3_uc011lat.1_Intron	NM_018091	NP_060561	Q9H9T3	ELP3_HUMAN	elongation protein 3 homolog	121					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	histone acetyltransferase activity|iron-sulfur cluster binding|metal ion binding|phosphorylase kinase regulator activity|protein binding				0		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.151)|Colorectal(74;0.183)		TTCTGATTTTGAGTATTCCAC	0.423000													11	43					0	0	0.000978159	0	0
UNC5D	137970	broad.mit.edu	37	8	35406867	35406867	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:35406867C>G	uc003xjr.1	+	2	489	c.161C>G	c.(160-162)CCT>CGT	p.P54R	UNC5D_uc003xjs.1_Missense_Mutation_p.P49R	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	54	Extracellular (Potential).|Ig-like.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		GGGACACTGCCTCATTTCATA	0.463000													6	44					0	0	0.000157383	0	0
ADAM18	8749	broad.mit.edu	37	8	39564371	39564371	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:39564371C>T	uc003xni.2	+	18	1965	c.1965C>T	c.(1963-1965)TTC>TTT	p.F655F	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Silent_p.F631F	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	655	Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			ATTGTAAATTCCAGTTTGGTT	0.338000													16	153					0	0	0.00074312	0	0
ADAM2	2515	broad.mit.edu	37	8	39606852	39606852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:39606852C>T	uc003xnj.2	-	18	2068	c.1993G>A	c.(1993-1995)GCT>ACT	p.A665T	ADAM2_uc003xnk.2_Missense_Mutation_p.A646T|ADAM2_uc011lck.1_Missense_Mutation_p.A602T|ADAM2_uc003xnl.2_Missense_Mutation_p.A509T	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	665	Extracellular (Potential).				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		GCTGGTATAGCTACAGGTGGA	0.323000													32	79					0	0	0.00058488	0	0
PXDNL	137902	broad.mit.edu	37	8	52336259	52336259	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:52336259G>A	uc003xqu.3	-	14	1772	c.1671C>T	c.(1669-1671)TTC>TTT	p.F557F		NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	557	Ig-like C2-type 4.				hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				CATCCACATGGAATTTACCAC	0.433000													14	39					0	0	0.000308642	0	0
RP1	6101	broad.mit.edu	37	8	55539411	55539411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:55539411G>A	uc003xsd.1	+	4	3117	c.2969G>A	c.(2968-2970)GGA>GAA	p.G990E	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	990					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			TGTAAAGAGGGAGATAAGTCT	0.373000													21	164					0	0	0.000229342	0	0
SDR16C5	195814	broad.mit.edu	37	8	57219301	57219301	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:57219301C>T	uc003xsy.1	-	5	1282	c.644G>A	c.(643-645)GGG>GAG	p.G215E	SDR16C5_uc010lyk.1_Missense_Mutation_p.G215E|SDR16C5_uc010lyl.1_Missense_Mutation_p.G171E	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	215					detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						GGTTTTGATCCCCTTTTGTTT	0.348000													25	80					0	0	0.00047179	0	0
PENK	5179	broad.mit.edu	37	8	57353893	57353893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:57353893C>T	uc003xsz.2	-	2	823	c.742G>A	c.(742-744)GAA>AAA	p.E248K	PENK_uc003xta.3_Missense_Mutation_p.E248K	NM_006211	NP_006202	P01210	PENK_HUMAN	proenkephalin	248					neuropeptide signaling pathway	extracellular region	neuropeptide hormone activity|opioid peptide activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_lung(136;0.229)	Epithelial(17;0.000873)|all cancers(17;0.0069)			GAGTAACTTTCGCCTTCTTCG	0.502000													59	94					0	0	0.000781405	0	0
C8orf34	116328	broad.mit.edu	37	8	69621293	69621293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:69621293G>A	uc010lyz.2	+	9	1097	c.1048G>A	c.(1048-1050)GAA>AAA	p.E350K	C8orf34_uc003xyb.2_Missense_Mutation_p.E325K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	350					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			TTCTCCAGATGAAAAAATCCC	0.328000													8	26					0	0	0.000274275	0	0
RDH10	157506	broad.mit.edu	37	8	74235016	74235016	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:74235016C>T	uc003xzi.2	+	5	1133	c.873C>T	c.(871-873)CGC>CGT	p.R291R	RDH10_uc003xzj.2_Silent_p.R126R|uc003xzk.1_Intron	NM_172037	NP_742034	Q8IZV5	RDH10_HUMAN	retinol dehydrogenase 10	291					retinal metabolic process|retinol metabolic process|visual perception	endoplasmic reticulum membrane|integral to membrane|microsome	binding|NADP-retinol dehydrogenase activity|retinol dehydrogenase activity				0	Breast(64;0.0954)		Epithelial(68;0.0105)|all cancers(69;0.0465)|BRCA - Breast invasive adenocarcinoma(89;0.0608)			GCACTCCCCGCCTCATGTACA	0.517000													20	55					0	0	0.000229342	0	0
FAM164A	51101	broad.mit.edu	37	8	79627485	79627485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:79627485C>T	uc003ybd.2	+	8	836	c.734C>T	c.(733-735)CCA>CTA	p.P245L		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	245										ovary(1)	1						AATTCCACACCACCTAGTTTG	0.388000													31	93					0	0	0.000339439	0	0
LRRCC1	85444	broad.mit.edu	37	8	86035759	86035759	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:86035759C>T	uc003ycw.2	+	7	1196	c.1042C>T	c.(1042-1044)CCT>TCT	p.P348S	LRRCC1_uc010lzz.1_Intron|LRRCC1_uc010maa.1_Missense_Mutation_p.P49S|LRRCC1_uc003ycx.2_Missense_Mutation_p.P255S|LRRCC1_uc003ycy.2_Missense_Mutation_p.P328S	NM_033402	NP_208325	Q9C099	LRCC1_HUMAN	sodium channel associated protein 2 isoform a	348					cell division|mitosis	centriole|nucleus					0						TAGAAAAGTTCCTCGAAGATC	0.328000													44	128					0	0	0.000374591	0	0
INTS8	55656	broad.mit.edu	37	8	95879562	95879563	+	Missense_Mutation	DNP	CC	AA	AA			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:95879562_95879563CC>AA	uc003yhb.2	+	20	2537_2538	c.2411_2412CC>AA	c.(2410-2412)CCC>CAA	p.P804Q	INTS8_uc011lgq.1_RNA|INTS8_uc011lgr.1_RNA|INTS8_uc010mba.2_Missense_Mutation_p.P631Q	NM_017864	NP_060334	Q75QN2	INT8_HUMAN	integrator complex subunit 8	804					snRNA processing	integrator complex	protein binding				0	Breast(36;1.05e-06)					TCTTCCATTCCCAAGTAAGTAG	0.302000													14	603					0	0	6.4e-05	0	0
ADCY8	114	broad.mit.edu	37	8	131861869	131861869	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:131861869G>A	uc003ytd.3	-	10	2647	c.2391C>T	c.(2389-2391)TTC>TTT	p.F797F	ADCY8_uc010mds.2_Intron	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	797	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			TGGCACCCAGGAAATTAATCA	0.453000										HNSCC(32;0.087)			18	24					0	0	0.000175454	0	0
ADCY8	114	broad.mit.edu	37	8	132051911	132051911	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:132051911C>T	uc003ytd.3	-	1	925	c.669G>A	c.(667-669)GAG>GAA	p.E223E	ADCY8_uc010mds.2_Silent_p.E223E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	223	Helical; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			AGATCACTACCTCAATGCCGG	0.617000										HNSCC(32;0.087)			6	21					0	0	3.59834e-05	0	0
TG	7038	broad.mit.edu	37	8	134125827	134125827	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:134125827G>A	uc003ytw.2	+	44	7775	c.7734G>A	c.(7732-7734)CGG>CGA	p.R2578R	TG_uc010mdw.2_Silent_p.R1337R|TG_uc011ljb.1_Silent_p.R947R|TG_uc011ljc.1_Silent_p.R711R	NM_003235	NP_003226	P01266	THYG_HUMAN	thyroglobulin precursor	2578					hormone biosynthetic process|signal transduction|thyroid gland development|thyroid hormone generation	extracellular space	hormone activity			ovary(8)|breast(4)|pancreas(1)|central_nervous_system(1)|skin(1)	15	Ovarian(258;0.00438)|Acute lymphoblastic leukemia(118;0.155)	Myeloproliferative disorder(644;0.00878)|Acute lymphoblastic leukemia(644;0.0559)|Breast(495;0.0735)	BRCA - Breast invasive adenocarcinoma(115;0.000701)	KIRC - Kidney renal clear cell carcinoma(542;0.0546)		CCTTCTCCCGGGCTCTGGAGA	0.547000													7	8					0	0	0.000157383	0	0
EPPK1	83481	broad.mit.edu	37	8	144942235	144942235	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr8:144942235G>A	uc003zaa.1	-	1	5200	c.5187C>T	c.(5185-5187)TTC>TTT	p.F1729F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	1729	Plectin 30.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGTTGGGGTCGAAGAAGCCCT	0.622000													21	42					0	0	0.000720815	0	0
CER1	9350	broad.mit.edu	37	9	14722205	14722205	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:14722205C>T	uc003zlj.2	-	1	511	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_005454	NP_005445	O95813	CER1_HUMAN	cerberus 1 precursor	156					BMP signaling pathway	extracellular space	cytokine activity				0				GBM - Glioblastoma multiforme(50;3.16e-06)		CAATGTACTTCATGGCTTTTG	0.517000													12	53					0	0	0.000219431	0	0
SLC24A2	25769	broad.mit.edu	37	9	19573379	19573379	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:19573379G>A	uc003zoa.1	-	6	1379	c.1317C>T	c.(1315-1317)CTC>CTT	p.L439L	SLC24A2_uc003zob.1_Silent_p.L422L	NM_020344	NP_065077	Q9UI40	NCKX2_HUMAN	solute carrier family 24	439	Cytoplasmic (Potential).				visual perception	integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(3)	3				GBM - Glioblastoma multiforme(1;1.67e-55)|Lung(42;0.0443)		TGTTGTGGGAGAGATTTCCAT	0.443000													9	63					0	0	0.000274275	0	0
PCSK5	5125	broad.mit.edu	37	9	78771975	78771975	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:78771975G>A	uc004ajz.2	+	11	1865	c.1327G>A	c.(1327-1329)GGA>AGA	p.G443R	PCSK5_uc004ajy.2_Missense_Mutation_p.G443R|PCSK5_uc004aka.2_RNA	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	443	Catalytic.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						CCATCTTTATGGATTTGGACT	0.522000													23	84					0	0	0.000878237	0	0
VPS13A	23230	broad.mit.edu	37	9	79898328	79898328	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:79898328C>T	uc004akr.2	+	30	3436	c.3176C>T	c.(3175-3177)TCG>TTG	p.S1059L	VPS13A_uc004akp.3_Missense_Mutation_p.S1059L|VPS13A_uc004akq.3_Missense_Mutation_p.S1059L|VPS13A_uc004aks.2_Intron	NM_033305	NP_150648	Q96RL7	VP13A_HUMAN	vacuolar protein sorting 13A isoform A	1059					Golgi to endosome transport|protein transport	intracellular	protein binding			pancreas(3)|skin(3)|ovary(2)|large_intestine(1)|central_nervous_system(1)	10						GCAGAATTATCGTGTTTACAG	0.239000													13	46					0	0	0.00010058	0	0
CYLC2	1539	broad.mit.edu	37	9	105767754	105767754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:105767754G>A	uc004bbs.2	+	5	911	c.841G>A	c.(841-843)GAC>AAC	p.D281N		NM_001340	NP_001331	Q14093	CYLC2_HUMAN	cylicin 2	281	31 X 3 AA repeats of K-K-X.				cell differentiation|multicellular organismal development|spermatogenesis	cytoskeletal calyx	structural constituent of cytoskeleton			skin(1)	1		all_hematologic(171;0.125)				CAGTAGTACAGACAGTGACTC	0.254000													4	28					0	0	0.00024832	0	0
KIAA0368	23392	broad.mit.edu	37	9	114178582	114178582	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:114178582G>A	uc004bfe.1	-	19	2268	c.2268C>T	c.(2266-2268)GTC>GTT	p.V756V	KIAA0368_uc010muc.1_Silent_p.V578V	NM_001080398	NP_001073867			KIAA0368 protein												0						TAAATGGAAGGACAGTGGTCC	0.378000													10	69					0	0	0.000673444	0	0
C9orf119	375757	broad.mit.edu	37	9	131038489	131038489	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:131038489C>T	uc004bup.2	+	1	65	c.65C>T	c.(64-66)CCC>CTC	p.P22L	GOLGA2_uc011maw.1_5'Flank|GOLGA2_uc010mxw.2_5'Flank|GOLGA2_uc004bul.1_5'Flank|C9orf119_uc010mxx.1_Missense_Mutation_p.P22L	NM_001040011	NP_001035100	Q1ZZU3	SWI5_HUMAN	hypothetical protein LOC375757	22					double-strand break repair via homologous recombination	Swi5-Sfr1 complex	protein binding				0						AACCGCTGTCCCCGCCCACCT	0.657000													8	34					0	0	0.000442599	0	0
ENTPD2	954	broad.mit.edu	37	9	139945549	139945549	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr9:139945549C>T	uc004ckw.1	-	5	635	c.579G>A	c.(577-579)CGG>CGA	p.R193R	ENTPD2_uc004ckv.1_5'Flank|ENTPD2_uc004ckx.1_Silent_p.R193R	NM_203468	NP_982293	Q9Y5L3	ENTP2_HUMAN	ectonucleoside triphosphate diphosphohydrolase 2	193	Extracellular (Potential).					integral to membrane	ATP binding				0	all_cancers(76;0.0926)	Myeloproliferative disorder(178;0.0511)	STAD - Stomach adenocarcinoma(284;0.123)	OV - Ovarian serous cystadenocarcinoma(145;2.94e-05)|Epithelial(140;0.00048)		GTGTCCCCTTCCGTGGCCGGA	0.677000													6	36					0	0	3.59834e-05	0	0
MXRA5	25878	broad.mit.edu	37	X	3238476	3238476	+	Silent	SNP	C	T	T	rs79552860		TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:3238476C>T	uc004crg.3	-	5	5407	c.5250G>A	c.(5248-5250)CAG>CAA	p.Q1750Q		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1750						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				AAGTGGGTATCTGGGGTCTCC	0.473000													15	17					0	0	0.000308642	0	0
MAGEB16	139604	broad.mit.edu	37	X	35821039	35821039	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:35821039C>T	uc010ngt.1	+	2	1005	c.726C>T	c.(724-726)ATC>ATT	p.I242I		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	242	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						AGCACTTCATCTTTGGAGAGC	0.488000													11	22					0	0	0.000673444	0	0
CXorf22	170063	broad.mit.edu	37	X	35971731	35971731	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:35971731G>A	uc004ddj.2	+	7	1128	c.1069G>A	c.(1069-1071)GAT>AAT	p.D357N	CXorf22_uc010ngv.2_RNA	NM_152632	NP_689845	Q6ZTR5	CX022_HUMAN	hypothetical protein LOC170063	357										large_intestine(1)|lung(1)|ovary(1)	3						TGGTAAAAAGGATATTGGACC	0.333000													14	34					0	0	0.00074312	0	0
TRO	7216	broad.mit.edu	37	X	54956310	54956310	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:54956310C>T	uc004dtq.2	+	12	3260	c.3153C>T	c.(3151-3153)GGC>GGT	p.G1051G	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Silent_p.G582G|TRO_uc004dtw.2_Silent_p.G654G|TRO_uc004dtx.2_Silent_p.G434G	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	1051	62 X 10 AA approximate tandem repeats.|25.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GTTTTGGTGGCTCTCCCAGCA	0.557000													9	16					0	0	0.000442599	0	0
PAGE3	139793	broad.mit.edu	37	X	55290330	55290330	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:55290330C>T	uc004dul.2	-	2	316	c.7G>A	c.(7-9)GGA>AGA	p.G3R	PAGE3_uc011mon.1_RNA	NM_001017931	NP_001017931			P antigen family, member 3 (prostate												0						CTTTGATGTCCACTCATGTTT	0.373000													6	21					0	0	3.59834e-05	0	0
FAAH2	158584	broad.mit.edu	37	X	57358031	57358031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:57358031G>A	uc004dvc.2	+	4	562	c.413G>A	c.(412-414)GGA>GAA	p.G138E		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	138						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						ACTCTTTTAGGAATGCCCAAT	0.328000										HNSCC(52;0.14)			17	28					0	0	0.000566183	0	0
HEPH	9843	broad.mit.edu	37	X	65411988	65411988	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:65411988C>T	uc011moz.1	+	7	1149	c.1089C>T	c.(1087-1089)CTC>CTT	p.L363L	HEPH_uc004dwn.2_Silent_p.L363L|HEPH_uc004dwo.2_Silent_p.L93L|HEPH_uc010nkr.2_Silent_p.L363L|HEPH_uc011mpa.1_Silent_p.L363L	NM_138737	NP_620074	Q9BQS7	HEPH_HUMAN	hephaestin isoform a	360	Extracellular (Potential).|Plastocyanin-like 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	integral to membrane|plasma membrane	copper ion binding|oxidoreductase activity			lung(5)|ovary(4)	9						TGCAGGCACTCTACAAGGTCA	0.488000													9	14					0	0	0.000978159	0	0
CYLC1	1538	broad.mit.edu	37	X	83128355	83128355	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:83128355C>T	uc004eei.1	+	4	660	c.639C>T	c.(637-639)TTC>TTT	p.F213F	CYLC1_uc004eeh.1_Silent_p.F212F	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	213					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						ACACTGAATTCCTACATACAA	0.303000													5	15					0	0	0.000602214	0	0
TCEAL5	340543	broad.mit.edu	37	X	102528897	102528897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:102528897C>T	uc004ejz.1	-	3	890	c.595G>A	c.(595-597)GAC>AAC	p.D199N		NM_001012979	NP_001012997	Q5H9L2	TCAL5_HUMAN	transcription elongation factor A (SII)-like 5	199					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(1)|breast(1)	2						TCTTCTAAGTCTTTCTGGCCC	0.333000													17	27					0	0	0.000422831	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449924	105449924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:105449924G>A	uc004emf.1	+	4	1148	c.499G>A	c.(499-501)GAT>AAT	p.D167N	MUM1L1_uc004emg.1_Missense_Mutation_p.D167N	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	167										ovary(2)|pancreas(1)|skin(1)	4						CCTGTATGATGATAAATCACA	0.433000													8	13					0	0	0.000157383	0	0
GPC4	2239	broad.mit.edu	37	X	132445423	132445423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:132445423G>A	uc004exc.1	-	4	952	c.740C>T	c.(739-741)GCC>GTC	p.A247V	GPC4_uc011mvg.1_Missense_Mutation_p.A177V	NM_001448	NP_001439	O75487	GPC4_HUMAN	glypican 4 precursor	247					anatomical structure morphogenesis|cell proliferation	anchored to membrane|external side of plasma membrane|extracellular space|insoluble fraction|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	Acute lymphoblastic leukemia(192;0.000127)					CTTCAACAGGGCATGGGTACA	0.468000													23	50					0	0	0.000720815	0	0
GPR112	139378	broad.mit.edu	37	X	135431858	135431858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:135431858G>A	uc004ezu.1	+	6	6284	c.5993G>A	c.(5992-5994)GGA>GAA	p.G1998E	GPR112_uc010nsb.1_Missense_Mutation_p.G1793E|GPR112_uc010nsc.1_Missense_Mutation_p.G1765E	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1998	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GCCACTTCAGGATCTGTAATT	0.463000													32	46					0	0	0.000409698	0	0
MAGEC1	9947	broad.mit.edu	37	X	140994421	140994421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:140994421C>T	uc004fbt.2	+	4	1517	c.1231C>T	c.(1231-1233)CCT>TCT	p.P411S	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	411							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCTCCAGATTCCTATGACCTC	0.478000										HNSCC(15;0.026)			49	77					0	0	0.000781405	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995392	140995392	+	Silent	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:140995392G>A	uc004fbt.2	+	4	2488	c.2202G>A	c.(2200-2202)GAG>GAA	p.E734E	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	734							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CTCAGGGGGAGGACTTCCAGT	0.547000										HNSCC(15;0.026)			29	69					0	0	0.000279167	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995819	140995819	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:140995819G>A	uc004fbt.2	+	4	2915	c.2629G>A	c.(2629-2631)GAA>AAA	p.E877K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	877							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					CCCAGTAGATGAATATACAAG	0.493000										HNSCC(15;0.026)			49	98					0	0	0.000781405	0	0
GABRQ	55879	broad.mit.edu	37	X	151821280	151821280	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:151821280C>T	uc004ffp.1	+	9	1455	c.1435C>T	c.(1435-1437)CCT>TCT	p.P479S		NM_018558	NP_061028	Q9UN88	GBRT_HUMAN	gamma-aminobutyric acid (GABA) receptor, theta	479						cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|neurotransmitter transporter activity			ovary(2)|pancreas(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CAGTATTTTTCCTACCGAAAT	0.542000													26	58					0	0	0.000227799	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935608	151935608	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:151935608C>T	uc004fgp.2	-	3	768	c.559G>A	c.(559-561)GAT>AAT	p.D187N		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	187	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					AGCAGGCCATCGTAGGAGAGG	0.572000													17	47					0	0	0.000566183	0	0
PNMA5	114824	broad.mit.edu	37	X	152159672	152159672	+	Silent	SNP	C	T	T			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chrX:152159672C>T	uc010ntw.2	-	3	810	c.471G>A	c.(469-471)AGG>AGA	p.R157R	PNMA5_uc004fha.3_Silent_p.R157R|PNMA5_uc010ntx.2_Silent_p.R157R|PNMA5_uc004fgy.3_Silent_p.R157R	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	157					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					CTTTCAGTTTCCTGTACCACA	0.418000													38	63					0	0	0.000228196	0	0
PCSK9	255738	broad.mit.edu	37	1	55505552	55505553	+	In_Frame_Ins	INS	-	CTG	CTG	rs67610340		TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:55505552_55505553insCTG	uc001cyf.1	+	1	333_334	c.42_43insCTG	c.(40-45)insCTG	p.23_24insL	PCSK9_uc010ool.1_RNA|PCSK9_uc010oom.1_5'Flank	NM_174936	NP_777596	Q8NBP7	PCSK9_HUMAN	proprotein convertase subtilisin/kexin type 9	23_24					cellular response to insulin stimulus|cellular response to starvation|cholesterol homeostasis|cholesterol metabolic process|kidney development|liver development|low-density lipoprotein particle receptor catabolic process|lysosomal transport|negative regulation of catalytic activity|negative regulation of low-density lipoprotein particle clearance|negative regulation of receptor recycling|neuron differentiation|positive regulation of neuron apoptosis|positive regulation of receptor internalization|protein autoprocessing|regulation of receptor activity	extracellular space|late endosome|lysosome|perinuclear region of cytoplasm	apolipoprotein receptor binding|identical protein binding|low-density lipoprotein particle receptor binding|serine-type endopeptidase activity|very-low-density lipoprotein particle receptor binding			ovary(2)|central_nervous_system(1)|skin(1)	4						Ggccgctgccactgctgctgct	0.574													25	82	---	---	---	---					
KIAA0907	22889	broad.mit.edu	37	1	155886422	155886423	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:155886422_155886423delCT	uc001fmi.1	-	12	1570_1571	c.1546_1547delAG	c.(1546-1548)AGGfs	p.R516fs	KIAA0907_uc001fmj.1_Frame_Shift_Del_p.R516fs|KIAA0907_uc009wrk.1_Frame_Shift_Del_p.R373fs|KIAA0907_uc009wrl.1_RNA	NM_014949	NP_055764	Q7Z7F0	K0907_HUMAN	hypothetical protein LOC22889	516											0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)		OV - Ovarian serous cystadenocarcinoma(3;8.82e-06)			TTACCTGTCCCTCTCTCTCTCT	0.396													8	285	---	---	---	---					
CDK18	5129	broad.mit.edu	37	1	205493374	205493375	+	Frame_Shift_Ins	INS	-	CT	CT	rs61733643	byFrequency	TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr1:205493374_205493375insCT	uc001hcr.2	+	4	597_598	c.378_379insCT	c.(376-381)AGGCTCfs	p.R126fs	CDK18_uc009xbl.1_RNA|CDK18_uc010pri.1_Frame_Shift_Ins_p.A117fs|CDK18_uc001hcp.2_Frame_Shift_Ins_p.R96fs|CDK18_uc001hcq.2_Frame_Shift_Ins_p.R96fs|CDK18_uc010prj.1_Frame_Shift_Ins_p.R7fs|CDK18_uc001hcs.2_Frame_Shift_Ins_p.R7fs|CDK18_uc009xbm.1_Frame_Shift_Ins_p.R7fs	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	94_95							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						TCAGCAAGAGGCTCTCTCTGCC	0.594											OREG0014156	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	18	86	---	---	---	---					
LARP4B	23185	broad.mit.edu	37	10	871151	871151	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:871151delA	uc001ifs.1	-	12	1379	c.1338delT	c.(1336-1338)ATTfs	p.I446fs		NM_015155	NP_055970	Q92615	LAR4B_HUMAN	La ribonucleoprotein domain family, member 4B	446							nucleotide binding|RNA binding			ovary(2)|central_nervous_system(1)	3						GGACACCATTAATTAATCGAT	0.473													36	170	---	---	---	---					
RUFY2	55680	broad.mit.edu	37	10	70156583	70156583	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr10:70156583delT	uc001job.2	-	4	784	c.457delA	c.(457-459)ATGfs	p.M153fs	RUFY2_uc001jnz.1_RNA|RUFY2_uc001joc.2_Intron|RUFY2_uc010qiw.1_Frame_Shift_Del_p.M60fs|RUFY2_uc001jod.1_Frame_Shift_Del_p.M118fs|RUFY2_uc009xpv.1_Frame_Shift_Del_p.M1fs|RUFY2_uc001joe.1_Frame_Shift_Del_p.M118fs	NM_017987	NP_060457	Q8WXA3	RUFY2_HUMAN	RUN and FYVE domain-containing 2 isoform a	167	RUN.					nucleus	metal ion binding			ovary(1)	1						TAATCGGCCATTTTTTTTTGC	0.398													7	88	---	---	---	---					
B2M	567	broad.mit.edu	37	15	45003781	45003782	+	Frame_Shift_Del	DEL	CT	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr15:45003781_45003782delCT	uc001zuc.2	+	1	97_98	c.37_38delCT	c.(37-39)CTCfs	p.L13fs	B2M_uc010uek.1_Frame_Shift_Del_p.L13fs|B2M_uc010bdx.1_Frame_Shift_Del_p.L13fs	NM_004048	NP_004039	P61769	B2MG_HUMAN	beta-2-microglobulin precursor	13					antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of defense response to virus by virus|viral reproduction	early endosome membrane|Golgi membrane|MHC class I protein complex	protein binding			ovary(2)|skin(1)	3		all_cancers(109;1.88e-13)|all_epithelial(112;2.13e-11)|Lung NSC(122;2.22e-07)|all_lung(180;1.81e-06)|Melanoma(134;0.0122)		all cancers(107;4.16e-21)|GBM - Glioblastoma multiforme(94;8.97e-07)|COAD - Colon adenocarcinoma(120;0.0357)|Colorectal(105;0.0377)|Lung(196;0.0903)|LUSC - Lung squamous cell carcinoma(244;0.192)		GCTCGCGCTACTCTCTCTTTCT	0.614													7	61	---	---	---	---					
MAP2K2	5605	broad.mit.edu	37	19	4099253	4099255	+	In_Frame_Del	DEL	CTT	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr19:4099253_4099255delCTT	uc002lzk.2	-	7	1117_1119	c.863_865delAAG	c.(862-867)GAAGGA>GGA	p.E288del	MAP2K2_uc002lzj.2_In_Frame_Del_p.E98del	NM_030662	NP_109587	P36507	MP2K2_HUMAN	mitogen-activated protein kinase kinase 2	288	Protein kinase.|Pro-rich.				activation of MAPK activity|activation of MAPKK activity|axon guidance|epidermal growth factor receptor signaling pathway|ERK1 and ERK2 cascade|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|extracellular region	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		TGAGGCTCTCCTTCTTCCCCGTC	0.700									Cardiofaciocutaneous_syndrome				4	8	---	---	---	---					
CEP250	11190	broad.mit.edu	37	20	34059970	34059976	+	Frame_Shift_Del	DEL	AACCCAG	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr20:34059970_34059976delAACCCAG	uc002xcm.2	+	12	1715_1721	c.1044_1050delAACCCAG	c.(1042-1050)ATAACCCAGfs	p.I348fs	CEP250_uc010zve.1_Translation_Start_Site|CEP250_uc010zvd.1_RNA	NM_007186	NP_009117	Q9BV73	CP250_HUMAN	centrosomal protein 2	348_350	Potential.				centriole-centriole cohesion|G2/M transition of mitotic cell cycle|protein localization|regulation of centriole-centriole cohesion	centriole|cilium|cytosol|microtubule basal body|perinuclear region of cytoplasm|protein complex	protein C-terminus binding|protein kinase binding			ovary(4)|central_nervous_system(1)	5	Lung NSC(9;0.00156)|all_lung(11;0.00243)		BRCA - Breast invasive adenocarcinoma(18;0.0106)			TCAAGGATATAACCCAGGTACTGGGAA	0.469													12	112	---	---	---	---					
NEUROD6	63974	broad.mit.edu	37	7	31378635	31378635	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:31378635delT	uc003tch.2	-	2	601	c.248delA	c.(247-249)AAGfs	p.K83fs		NM_022728	NP_073565	Q96NK8	NDF6_HUMAN	neurogenic differentiation 6	83	Nuclear localization signal (Potential).				cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)	2						CTTTGTTGTCTTTTTTTTCCT	0.398													7	328	---	---	---	---					
ZAN	7455	broad.mit.edu	37	7	100334934	100334934	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GH-06A-11D-A196-08	TCGA-EE-A2GH-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	3f64d80b-b9fa-4a2f-a505-b59946afa088	a96022ac-ca42-41fb-9e6a-07ced57620cb	g.chr7:100334934delT	uc003uwj.2	+	6	740	c.575delT	c.(574-576)CTGfs	p.L192fs	ZAN_uc003uwk.2_Frame_Shift_Del_p.L192fs|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	192	MAM 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			GACATCGCCCTGGATGCCCTC	0.627													2	4	---	---	---	---					
