Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WASH7P	653635	broad.mit.edu	37	1	14976	14976	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:14976G>A	uc009vis.2	-	3		c.369C>T			WASH7P_uc009vit.2_RNA|WASH7P_uc001aae.3_RNA|WASH7P_uc009viu.2_RNA|WASH7P_uc001aab.3_RNA|WASH7P_uc001aah.3_RNA|WASH7P_uc009vir.2_RNA|WASH7P_uc009viq.2_Intron|WASH7P_uc001aac.3_RNA|WASH7P_uc009viv.2_RNA|WASH7P_uc009viw.2_RNA					Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.												0						CTACCCTTGCGCCTCATGACC	0.582													4	8					0	0	0.000248	0	0
DVL1	1855	broad.mit.edu	37	1	1275130	1275130	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:1275130G>A	uc001aer.3	-	9	1019	c.972C>T	c.(970-972)ATC>ATT	p.I324I	DVL1_uc002quu.2_Silent_p.I41I|DVL1_uc009vka.2_5'UTR|DVL1_uc001aeu.1_Missense_Mutation_p.S11L	NM_004421	NP_004412	O14640	DVL1_HUMAN	dishevelled 1	324					canonical Wnt receptor signaling pathway|dendrite morphogenesis|intracellular signal transduction|negative regulation of protein binding|negative regulation of protein kinase activity|neural tube development|neuromuscular junction development|neurotransmitter secretion|positive regulation of transcription, DNA-dependent|positive regulation of Wnt receptor signaling pathway|protein localization to nucleus|receptor clustering|transcription from RNA polymerase II promoter|Wnt receptor signaling pathway, planar cell polarity pathway	cytoplasmic membrane-bounded vesicle|cytosol|plasma membrane|synapse|synaptosome	frizzled binding|identical protein binding|protein kinase binding|signal transducer activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		TCTGGGAAACGATCTCCCGCA	0.642													4	9					0	0	0.000248	0	0
KIAA1751	85452	broad.mit.edu	37	1	1919980	1919980	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:1919980C>T	uc001aim.1	-	4	423	c.267G>A	c.(265-267)GAG>GAA	p.E89E	KIAA1751_uc009vkz.1_Silent_p.E89E|KIAA1751_uc001ain.1_Silent_p.E89E	NM_001080484	NP_001073953	Q9C0B2	K1751_HUMAN	hypothetical protein LOC85452	89										pancreas(1)	1	all_cancers(77;0.000708)|all_epithelial(69;0.000943)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;6.04e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Medulloblastoma(700;0.151)|Lung SC(97;0.217)		Epithelial(90;8.79e-39)|OV - Ovarian serous cystadenocarcinoma(86;9.61e-25)|GBM - Glioblastoma multiforme(42;1.2e-07)|Colorectal(212;4.84e-05)|COAD - Colon adenocarcinoma(227;0.000214)|Kidney(185;0.00254)|BRCA - Breast invasive adenocarcinoma(365;0.00461)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.037)|Lung(427;0.205)		GCTCTTGCTCCTCATGCATCT	0.547													8	21					0	0	0.006214	0	0
ARHGEF16	27237	broad.mit.edu	37	1	3397041	3397042	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:3397041_3397042GG>AA	uc001akg.3	+	15	2268_2269	c.2020_2021GG>AA	c.(2020-2022)GGA>AAA	p.G674K	ARHGEF16_uc001aki.2_Missense_Mutation_p.G386K|ARHGEF16_uc001akj.2_Missense_Mutation_p.G386K|ARHGEF16_uc010nzh.1_Missense_Mutation_p.G378K	NM_014448	NP_055263	Q5VV41	ARHGG_HUMAN	Rho guanine exchange factor 16	674	SH3.				activation of Cdc42 GTPase activity|activation of Rac GTPase activity|apoptosis|cell chemotaxis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|small GTPase mediated signal transduction	cytosol	PDZ domain binding|receptor tyrosine kinase binding|Rho GTPase binding|Rho guanyl-nucleotide exchange factor activity			ovary(1)	1	all_cancers(77;0.00276)|all_epithelial(69;0.00102)|Ovarian(185;0.0634)|Lung NSC(156;0.0969)|all_lung(157;0.101)	all_epithelial(116;7.14e-21)|all_lung(118;2.24e-08)|Lung NSC(185;3.55e-06)|Breast(487;0.000765)|Renal(390;0.00121)|Hepatocellular(190;0.0046)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.211)		Epithelial(90;8.62e-38)|OV - Ovarian serous cystadenocarcinoma(86;3.62e-22)|GBM - Glioblastoma multiforme(42;2.49e-12)|Colorectal(212;4.25e-05)|COAD - Colon adenocarcinoma(227;0.000196)|Kidney(185;0.000342)|BRCA - Breast invasive adenocarcinoma(365;0.000681)|KIRC - Kidney renal clear cell carcinoma(229;0.00549)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.201)		GCTCCGGGACGGAGAGACGGGA	0.673													6	3					0	0	0.004672	0	0
CAMTA1	23261	broad.mit.edu	37	1	7798031	7798031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:7798031C>T	uc001aoi.2	+	16	3878	c.3671C>T	c.(3670-3672)CCT>CTT	p.P1224L	CAMTA1_uc010nzv.1_Missense_Mutation_p.P311L|CAMTA1_uc001aok.3_Missense_Mutation_p.P267L|CAMTA1_uc001aoj.2_Missense_Mutation_p.P180L	NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	1224					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		CTGAGAAGACCTCGTTCTGAA	0.438													14	48					0	0	0.003163	0	0
C1orf127	148345	broad.mit.edu	37	1	11008258	11008258	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:11008258G>A	uc010oao.1	-	8	1492	c.1487C>T	c.(1486-1488)TCC>TTC	p.S496F	C1orf127_uc001arr.1_Missense_Mutation_p.S478F|C1orf127_uc001ars.1_Missense_Mutation_p.S470F	NM_173507	NP_775778	B7ZLG7	B7ZLG7_HUMAN	hypothetical protein LOC148345	496										ovary(1)	1	Ovarian(185;0.249)	Lung NSC(185;0.000226)|all_lung(284;0.000302)|Renal(390;0.000469)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)	STAD - Stomach adenocarcinoma(5;0.0224)	UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.71e-07)|COAD - Colon adenocarcinoma(227;7.79e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000305)|Kidney(185;0.000785)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|READ - Rectum adenocarcinoma(331;0.0509)		TGGTTCTGAGGATGAAAGGTC	0.647													12	16					0	0	0.001855	0	0
PTCHD2	57540	broad.mit.edu	37	1	11589625	11589625	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:11589625C>T	uc001ash.3	+	14	2949	c.2811C>T	c.(2809-2811)TTC>TTT	p.F937F		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	937	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		AGCTGTACTTCGCCCAGTCCC	0.652													15	22					0	0	0.001523	0	0
PLOD1	5351	broad.mit.edu	37	1	12032952	12032952	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:12032952C>T	uc001atm.2	+	18	2017	c.1926C>T	c.(1924-1926)GTC>GTT	p.V642V	PLOD1_uc010obb.1_Silent_p.V689V	NM_000302	NP_000293	Q02809	PLOD1_HUMAN	lysyl hydroxylase 1 precursor	642	Fe2OG dioxygenase.				epidermis development|hydroxylysine biosynthetic process|protein modification process|response to hypoxia	rough endoplasmic reticulum membrane	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-lysine 5-dioxygenase activity|protein homodimerization activity			ovary(2)|breast(1)	3	Ovarian(185;0.249)	Lung NSC(185;8.69e-05)|all_lung(284;9.87e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.06e-06)|COAD - Colon adenocarcinoma(227;0.000273)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.000809)|KIRC - Kidney renal clear cell carcinoma(229;0.00267)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)	Minoxidil(DB00350)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGGCCTTTGTCGTCCGCTACA	0.577													25	16					0	0	0.004656	0	0
TNFRSF8	943	broad.mit.edu	37	1	12170215	12170215	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:12170215G>A	uc001atq.2	+	6	852	c.630G>A	c.(628-630)AGG>AGA	p.R210R	TNFRSF8_uc010obc.1_Silent_p.R99R	NM_001243	NP_001234	P28908	TNR8_HUMAN	tumor necrosis factor receptor superfamily,	210	Extracellular (Potential).|TNFR-Cys 4.				cellular response to mechanical stimulus|negative regulation of cell proliferation|positive regulation of apoptosis|positive regulation of TRAIL biosynthetic process|positive regulation of tumor necrosis factor biosynthetic process	cytoplasm|integral to membrane|plasma membrane				skin(2)|ovary(1)|pancreas(1)|central_nervous_system(1)	5	Ovarian(185;0.249)	Lung NSC(185;8.71e-05)|all_lung(284;9.89e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;5.66e-06)|COAD - Colon adenocarcinoma(227;0.000261)|BRCA - Breast invasive adenocarcinoma(304;0.000304)|Kidney(185;0.000777)|KIRC - Kidney renal clear cell carcinoma(229;0.00261)|STAD - Stomach adenocarcinoma(313;0.0073)|READ - Rectum adenocarcinoma(331;0.0649)		AACTGACGAGGGCTCCCGACT	0.617													7	16					0	0	0.003080	0	0
VPS13D	55187	broad.mit.edu	37	1	12353750	12353750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:12353750G>A	uc001atv.2	+	24	6163	c.6022G>A	c.(6022-6024)GAG>AAG	p.E2008K	VPS13D_uc001atw.2_Missense_Mutation_p.E2008K|VPS13D_uc001atx.2_Missense_Mutation_p.E1196K	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	2008					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		AGCTGCTATTGAGGGGCAGAC	0.517													8	22					0	0	0.003080	0	0
NBPF1	55672	broad.mit.edu	37	1	16892268	16892268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:16892268G>A	uc009vos.1	-	28	4037	c.3149C>T	c.(3148-3150)CCT>CTT	p.P1050L	uc001ayw.2_5'Flank	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	1050	NBPF 7.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		CAAGACTTCAGGCTCTACTGC	0.488													25	535					0	0	0.006230	0	0
NBPF1	55672	broad.mit.edu	37	1	16895665	16895665	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:16895665G>A	uc009vos.1	-	23	3405	c.2517C>T	c.(2515-2517)CTC>CTT	p.L839L	NBPF1_uc009vot.1_Silent_p.L297L|NBPF1_uc001ayz.1_Silent_p.L297L|NBPF1_uc010oce.1_Silent_p.L568L	NM_017940	NP_060410	Q3BBV0	NBPF1_HUMAN	hypothetical protein LOC55672	839	NBPF 4.					cytoplasm					0				UCEC - Uterine corpus endometrioid carcinoma (279;0.00459)|BRCA - Breast invasive adenocarcinoma(304;7.52e-06)|COAD - Colon adenocarcinoma(227;1.05e-05)|Kidney(64;0.00016)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.179)		GAGGAATTGAGAGAGTCGAAT	0.507													51	203					0	0	0.003610	0	0
IGSF21	84966	broad.mit.edu	37	1	18702815	18702815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:18702815G>A	uc001bau.1	+	7	1410	c.1027G>A	c.(1027-1029)GGA>AGA	p.G343R	IGSF21_uc001bav.1_Missense_Mutation_p.G164R	NM_032880	NP_116269	Q96ID5	IGS21_HUMAN	immunoglobin superfamily, member 21 precursor	343						extracellular region				ovary(2)|large_intestine(1)|skin(1)	4		Colorectal(325;0.000147)|Renal(390;0.00145)|all_lung(284;0.00366)|Lung NSC(340;0.00376)|Breast(348;0.00387)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0439)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0121)|BRCA - Breast invasive adenocarcinoma(304;5.52e-05)|Kidney(64;0.00103)|KIRC - Kidney renal clear cell carcinoma(64;0.0102)|STAD - Stomach adenocarcinoma(196;0.0118)|READ - Rectum adenocarcinoma(331;0.157)		TGCCCCCAAAGGACCCAAAAT	0.527													56	42					0	0	0.003610	0	0
KLHDC7A	127707	broad.mit.edu	37	1	18809632	18809632	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:18809632C>T	uc001bax.2	+	1	2209	c.2157C>T	c.(2155-2157)GCC>GCT	p.A719A	KLHDC7A_uc009vpg.2_Silent_p.A501A	NM_152375	NP_689588	Q5VTJ3	KLD7A_HUMAN	kelch domain containing 7A	719						integral to membrane				ovary(2)|upper_aerodigestive_tract(1)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000152)|Lung NSC(340;0.000185)|Breast(348;0.00046)|Renal(390;0.000518)|Ovarian(437;0.0014)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|BRCA - Breast invasive adenocarcinoma(304;1.41e-05)|Kidney(64;0.00017)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCCAGTGCGCCGTGGTGGACA	0.652													6	18					0	0	0.003080	0	0
UBR4	23352	broad.mit.edu	37	1	19433105	19433105	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:19433105G>A	uc001bbi.2	-	83	12355	c.12351C>T	c.(12349-12351)TCC>TCT	p.S4117S	UBR4_uc001bbg.2_5'Flank|UBR4_uc001bbh.2_5'Flank	NM_020765	NP_065816	Q5T4S7	UBR4_HUMAN	retinoblastoma-associated factor 600	4117					interspecies interaction between organisms	cytoplasm|cytoskeleton|integral to membrane|nucleus	calmodulin binding|ubiquitin-protein ligase activity|zinc ion binding			kidney(10)|ovary(7)|breast(4)|pancreas(2)|skin(2)	25		Colorectal(325;3.46e-05)|Renal(390;0.000147)|all_lung(284;0.000328)|Lung NSC(340;0.000406)|Breast(348;0.000814)|Ovarian(437;0.00774)|Myeloproliferative disorder(586;0.0256)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00674)|BRCA - Breast invasive adenocarcinoma(304;5.43e-05)|Kidney(64;0.000337)|KIRC - Kidney renal clear cell carcinoma(64;0.00426)|STAD - Stomach adenocarcinoma(196;0.00715)|READ - Rectum adenocarcinoma(331;0.0816)		GATCCAAGGGGGAGGTCCTCT	0.567													22	51					0	0	0.002780	0	0
PLA2G2A	5320	broad.mit.edu	37	1	20304957	20304957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:20304957C>T	uc001bcu.2	-	3	319	c.101G>A	c.(100-102)GGA>GAA	p.G34E	PLA2G2A_uc001bcv.2_Missense_Mutation_p.G34E|PLA2G2A_uc010oda.1_Missense_Mutation_p.G34E|PLA2G2A_uc010odb.1_Missense_Mutation_p.G34E	NM_001161729	NP_001155201	P14555	PA2GA_HUMAN	phospholipase A2, group IIA precursor	34					defense response to Gram-positive bacterium|lipid catabolic process|low-density lipoprotein particle remodeling|phosphatidic acid metabolic process|positive regulation of inflammatory response|positive regulation of macrophage derived foam cell differentiation	endoplasmic reticulum|extracellular space|membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|phospholipid binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000138)|Kidney(64;0.000171)|GBM - Glioblastoma multiforme(114;0.00032)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		GGCTTCCTTTCCTGTCGTCAA	0.552													10	22					0	0	0.001368	0	0
ALPL	249	broad.mit.edu	37	1	21887146	21887146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:21887146G>A	uc001bet.2	+	3	346	c.89G>A	c.(88-90)CGA>CAA	p.R30Q	ALPL_uc010odn.1_5'UTR|ALPL_uc010odo.1_5'UTR|ALPL_uc010odp.1_5'UTR|ALPL_uc001beu.3_Missense_Mutation_p.R30Q	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	30					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	AAGTACTGGCGAGACCAAGCG	0.517													14	26					0	0	0.002450	0	0
ALPL	249	broad.mit.edu	37	1	21889719	21889719	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:21889719G>A	uc001bet.2	+	5	671	c.414G>A	c.(412-414)CGG>CGA	p.R138R	ALPL_uc010odn.1_Silent_p.R86R|ALPL_uc010odo.1_Silent_p.R83R|ALPL_uc010odp.1_Silent_p.R61R|ALPL_uc001beu.3_Silent_p.R138R	NM_000478	NP_000469	P05186	PPBT_HUMAN	tissue-nonspecific alkaline phosphatase	138					response to vitamin D|skeletal system development	anchored to membrane|cytoplasm|integral to membrane|plasma membrane	alkaline phosphatase activity|metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		all_lung(284;2.19e-05)|Lung NSC(340;2.22e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0192)|OV - Ovarian serous cystadenocarcinoma(117;8.7e-28)|COAD - Colon adenocarcinoma(152;1.57e-05)|GBM - Glioblastoma multiforme(114;2.66e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000177)|STAD - Stomach adenocarcinoma(196;0.00645)|KIRC - Kidney renal clear cell carcinoma(1967;0.00856)|READ - Rectum adenocarcinoma(331;0.0623)|Lung(427;0.146)	Amifostine(DB01143)	AGCGTTCCCGGTGCAACACCA	0.627													4	22					0	0	0.000248	0	0
HSPG2	3339	broad.mit.edu	37	1	22203098	22203098	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:22203098G>A	uc001bfj.2	-	22	2773	c.2733C>T	c.(2731-2733)TTC>TTT	p.F911F	HSPG2_uc009vqd.2_Silent_p.F912F	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	911	Laminin EGF-like 4; truncated.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TACTCAGGTGGAAAGAGCCGT	0.592													6	14					0	0	0.001984	0	0
EPHB2	2048	broad.mit.edu	37	1	23222940	23222940	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:23222940G>A	uc009vqj.1	+	9	1879	c.1734G>A	c.(1732-1734)ACG>ACA	p.T578T	EPHB2_uc001bge.2_Silent_p.T579T|EPHB2_uc001bgf.2_Silent_p.T578T|EPHB2_uc010odu.1_Intron	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	578	Cytoplasmic (Potential).				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CGGAGTACACGGACAAGCTGC	0.547									Hereditary_Prostate_Cancer				6	33					0	0	0.003080	0	0
ASAP3	55616	broad.mit.edu	37	1	23758271	23758271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:23758271G>A	uc001bha.2	-	23	2588	c.2464C>T	c.(2464-2466)CTC>TTC	p.L822F	ASAP3_uc001bgy.1_Missense_Mutation_p.L326F|ASAP3_uc001bgz.1_RNA|ASAP3_uc010odz.1_Missense_Mutation_p.L712F|ASAP3_uc010oea.1_Missense_Mutation_p.L813F|ASAP3_uc001bhb.2_Intron	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	822					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGCTCTCGGAGGCCCTCTTCA	0.632													14	31					0	0	0.003163	0	0
ASAP3	55616	broad.mit.edu	37	1	23768693	23768694	+	Missense_Mutation	DNP	GA	AG	AG			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:23768693_23768694GA>AG	uc001bha.2	-	7	780_781	c.656_657TC>CT	c.(655-657)TTC>TCT	p.F219S	ASAP3_uc010odz.1_Missense_Mutation_p.F88S|ASAP3_uc010oea.1_Missense_Mutation_p.F210S|ASAP3_uc001bhb.2_5'Flank	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	219					regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GCTGGGCGTGGAAGAACTTGAT	0.545													5	3					0	0	0.004672	0	0
MDS2	259283	broad.mit.edu	37	1	23953724	23953724	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:23953724G>A	uc001bhi.3	+	3		c.1014G>A			MDS2_uc001bhj.3_RNA					Homo sapiens MDS2 gene.											ovary(2)	2						ctgttcaaatggtttttatgt	0.02			T	ETV6	MDS								7	2					0	0	0.001984	0	0
C1orf63	57035	broad.mit.edu	37	1	25569092	25569092	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:25569092C>T	uc001bjw.2	-	5	1113	c.861G>A	c.(859-861)TGG>TGA	p.W287*		NM_020317	NP_064713	Q9BUV0	CA063_HUMAN	hypothetical protein LOC57035	287										pancreas(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;0.000245)|all_lung(284;0.000335)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0101)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0936)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0415)|OV - Ovarian serous cystadenocarcinoma(117;7.9e-27)|Colorectal(126;8.83e-09)|COAD - Colon adenocarcinoma(152;6.43e-07)|STAD - Stomach adenocarcinoma(196;0.000333)|BRCA - Breast invasive adenocarcinoma(304;0.000443)|KIRC - Kidney renal clear cell carcinoma(1967;0.000716)|GBM - Glioblastoma multiforme(114;0.000932)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		AGATAGGTATCCACAGTCCAT	0.378													19	45					0	0	0.001523	0	0
UBXN11	91544	broad.mit.edu	37	1	26620703	26620703	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:26620703C>T	uc001blw.2	-	9	825	c.552G>A	c.(550-552)TGG>TGA	p.W184*	UBXN11_uc001blz.1_Nonsense_Mutation_p.W151*|UBXN11_uc001blv.2_Nonsense_Mutation_p.W146*|UBXN11_uc001bly.2_Intron|UBXN11_uc001blx.2_Intron|UBXN11_uc001bma.2_Nonsense_Mutation_p.W151*|UBXN11_uc001bmb.1_Nonsense_Mutation_p.W184*|UBXN11_uc010ofb.1_Nonsense_Mutation_p.W109*|UBXN11_uc010ofc.1_Nonsense_Mutation_p.W26*	NM_183008	NP_892120	Q5T124	UBX11_HUMAN	socius isoform 2	184						cytoplasm|cytoskeleton				ovary(1)	1						TACCTGGCTTCCAGAACTTCT	0.592													18	33					0	0	0.008871	0	0
SMPDL3B	27293	broad.mit.edu	37	1	28279788	28279788	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:28279788G>A	uc001bpg.2	+	4	627	c.436G>A	c.(436-438)GGA>AGA	p.G146R	SMPDL3B_uc001bpf.2_Missense_Mutation_p.G146R|SMPDL3B_uc010ofq.1_5'UTR|SMPDL3B_uc010ofr.1_Intron	NM_014474	NP_055289	Q92485	ASM3B_HUMAN	acid sphingomyelinase-like phosphodiesterase 3B	146					sphingomyelin catabolic process	extracellular space	hydrolase activity, acting on glycosyl bonds|sphingomyelin phosphodiesterase activity			ovary(3)	3		Colorectal(325;3.46e-05)|all_lung(284;0.000414)|Lung NSC(340;0.000431)|Renal(390;0.00121)|Breast(348;0.00345)|Ovarian(437;0.00503)|all_neural(195;0.0208)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0419)|OV - Ovarian serous cystadenocarcinoma(117;5.68e-24)|Colorectal(126;1.65e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00273)|STAD - Stomach adenocarcinoma(196;0.00303)|BRCA - Breast invasive adenocarcinoma(304;0.00587)|READ - Rectum adenocarcinoma(331;0.055)		GTTCCCAGCTGGAAGTAACAA	0.398													9	27					0	0	0.000978	0	0
PTPRU	10076	broad.mit.edu	37	1	29631876	29631876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:29631876G>A	uc001bru.2	+	19	2896	c.2786G>A	c.(2785-2787)CGA>CAA	p.R929Q	PTPRU_uc001brv.2_Missense_Mutation_p.R919Q|PTPRU_uc001brw.2_Missense_Mutation_p.R919Q|PTPRU_uc009vtq.2_Missense_Mutation_p.R919Q|PTPRU_uc009vtr.2_Missense_Mutation_p.R919Q	NM_005704	NP_005695	Q92729	PTPRU_HUMAN	protein tyrosine phosphatase, receptor type, U	929	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				canonical Wnt receptor signaling pathway|cell differentiation|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transmembrane receptor protein tyrosine phosphatase signaling pathway	cell-cell junction|integral to plasma membrane	beta-catenin binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(3)|ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	7		Colorectal(325;0.000399)|Lung NSC(340;0.00953)|all_lung(284;0.0112)|Breast(348;0.0126)|all_neural(195;0.0199)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;6.99e-07)|COAD - Colon adenocarcinoma(152;3.18e-05)|STAD - Stomach adenocarcinoma(196;0.0234)|READ - Rectum adenocarcinoma(331;0.0686)|BRCA - Breast invasive adenocarcinoma(304;0.0871)		GATCGGCACCGAGTGAAACTG	0.567													35	14					0	0	0.004289	0	0
MATN1	4146	broad.mit.edu	37	1	31194579	31194579	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:31194579C>T	uc001brz.2	-	2	148	c.114G>A	c.(112-114)CGG>CGA	p.R38R	uc001bsb.1_Intron|MATN1_uc001bsa.1_5'Flank	NM_002379	NP_002370	P21941	MATN1_HUMAN	matrilin 1, cartilage matrix protein precursor	38	VWFA 1.				protein complex assembly	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding			central_nervous_system(1)	1		Colorectal(325;0.00792)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)|Ovarian(437;0.0563)|Breast(348;0.0848)|Medulloblastoma(700;0.123)		Colorectal(126;1.29e-05)|COAD - Colon adenocarcinoma(152;0.000726)|STAD - Stomach adenocarcinoma(196;0.0183)|READ - Rectum adenocarcinoma(331;0.0649)		GGTCTGTGGGCCGCGTCCGGC	0.597													16	10					0	0	0.004990	0	0
TMEM39B	55116	broad.mit.edu	37	1	32560520	32560520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:32560520G>A	uc010ogv.1	+	7	1209	c.1063G>A	c.(1063-1065)GGC>AGC	p.G355S	TMEM39B_uc010ogt.1_RNA|TMEM39B_uc010ogu.1_Missense_Mutation_p.G228S|TMEM39B_uc001bue.3_Missense_Mutation_p.G356S|TMEM39B_uc001buf.3_Missense_Mutation_p.G156S|TMEM39B_uc010ogw.1_Missense_Mutation_p.G156S	NM_018056	NP_060526	Q9GZU3	TM39B_HUMAN	transmembrane protein 39B	355						integral to membrane					0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				CGCCCATCTGGGCTGTTGGCA	0.627													11	17					0	0	0.000978	0	0
KPNA6	23633	broad.mit.edu	37	1	32626295	32626295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:32626295C>T	uc001bug.2	+	7	726	c.638C>T	c.(637-639)CCT>CTT	p.P213L	KPNA6_uc001buh.2_5'UTR|KPNA6_uc010ogx.1_Missense_Mutation_p.P210L|KPNA6_uc010ogy.1_Missense_Mutation_p.P218L|KPNA6_uc009vtz.2_Missense_Mutation_p.P108L	NM_012316	NP_036448	O60684	IMA7_HUMAN	karyopherin alpha 6	213	NLS binding site (major) (By similarity).|ARM 4.				NLS-bearing substrate import into nucleus	cytoplasm|nuclear pore	protein binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.174)				ATCCTTAATCCTTTGTTAACG	0.463													11	16					0	0	0.001368	0	0
LCK	3932	broad.mit.edu	37	1	32751132	32751132	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:32751132G>A	uc001bux.2	+	13	1483	c.1345G>A	c.(1345-1347)GTG>ATG	p.V449M	LCK_uc001buy.2_Missense_Mutation_p.V449M|LCK_uc001buz.2_Missense_Mutation_p.V479M|LCK_uc001bva.2_Missense_Mutation_p.V456M	NM_005356	NP_005347	P06239	LCK_HUMAN	lymphocyte-specific protein tyrosine kinase	449	Protein kinase.				activation of caspase activity|cellular zinc ion homeostasis|induction of apoptosis|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of T cell receptor signaling pathway|regulation of defense response to virus by virus|release of sequestered calcium ion into cytosol|response to drug|T cell costimulation|T cell differentiation|T cell receptor signaling pathway|viral reproduction	cytosol|Golgi apparatus|membrane raft|pericentriolar material|plasma membrane	ATP binding|ATPase binding|CD4 receptor binding|CD8 receptor binding|glycoprotein binding|non-membrane spanning protein tyrosine kinase activity|phosphatidylinositol 3-kinase binding|protein C-terminus binding|protein kinase binding|protein serine/threonine phosphatase activity|SH2 domain binding			lung(3)|central_nervous_system(2)|ovary(1)	6		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Ovarian(437;0.101)|Breast(348;0.212)			Dasatinib(DB01254)	CAACCCGGAGGTGATTCAGAA	0.502			T	TRB@	T-ALL								28	14					0	0	0.002096	0	0
YARS	8565	broad.mit.edu	37	1	33246732	33246732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:33246732C>T	uc001bvy.1	-	10	1845	c.1057G>A	c.(1057-1059)GGC>AGC	p.G353S	YARS_uc001bvw.1_Missense_Mutation_p.G13S|YARS_uc001bvx.1_Missense_Mutation_p.G4S	NM_003680	NP_003671	P54577	SYYC_HUMAN	tyrosyl-tRNA synthetase	353					apoptosis|tyrosyl-tRNA aminoacylation	cytosol|extracellular space|nucleus|soluble fraction	ATP binding|interleukin-8 receptor binding|signal transducer activity|tRNA binding|tyrosine-tRNA ligase activity			skin(2)	2		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.244)			L-Tyrosine(DB00135)	TTGGCAGGGCCTTTGGCCATT	0.483													13	34					0	0	0.001855	0	0
CSMD2	114784	broad.mit.edu	37	1	34035099	34035099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:34035099C>T	uc001bxn.1	-	53	8041	c.8012G>A	c.(8011-8013)GGA>GAA	p.G2671E	CSMD2_uc001bxm.1_Missense_Mutation_p.G2669E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2671	Sushi 17.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGACAGTGTTCCGATGCGGTG	0.572													12	19					0	0	0.001855	0	0
CSMD2	114784	broad.mit.edu	37	1	34238196	34238196	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:34238196C>T	uc001bxn.1	-	13	1729	c.1700G>A	c.(1699-1701)TGG>TAG	p.W567*	CSMD2_uc001bxm.1_Nonsense_Mutation_p.W607*	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	567	Sushi 3.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTTAGCCGACCATTGGTTATT	0.577													20	42					0	0	0.002780	0	0
EIF2C1	26523	broad.mit.edu	37	1	36379561	36379561	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:36379561C>T	uc001bzl.2	+	13	1914	c.1701C>T	c.(1699-1701)GTC>GTT	p.V567V	EIF2C1_uc001bzk.2_Silent_p.V492V|EIF2C1_uc009vuy.2_RNA	NM_012199	NP_036331	Q9UL18	AGO1_HUMAN	eukaryotic translation initiation factor 2C, 1	567	Piwi.				negative regulation of translation involved in gene silencing by miRNA|nuclear-transcribed mRNA catabolic process|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body|cytosol|micro-ribonucleoprotein complex|polysome	protein binding|RNA binding			ovary(2)|skin(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				AGATCAATGTCAAACTTGGTG	0.493													12	49					0	0	0.000978	0	0
THRAP3	9967	broad.mit.edu	37	1	36748237	36748237	+	Missense_Mutation	SNP	C	T	T	rs147227162	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:36748237C>T	uc001cae.3	+	3	297	c.73C>T	c.(73-75)CGT>TGT	p.R25C	THRAP3_uc001caf.3_Missense_Mutation_p.R25C|THRAP3_uc001cag.1_Missense_Mutation_p.R25C	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	25	Arg-rich.|Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				ATCTCGTTCTCGTTCATTTTC	0.443			T	USP6	aneurysmal bone cysts								20	16					0	0	0.008871	0	0
CSF3R	1441	broad.mit.edu	37	1	36945039	36945039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:36945039G>A	uc001caw.1	-	3	237	c.59C>T	c.(58-60)CCC>CTC	p.P20L	CSF3R_uc001cav.1_Missense_Mutation_p.P20L|CSF3R_uc001cax.1_Missense_Mutation_p.P20L|CSF3R_uc001cay.1_Missense_Mutation_p.P20L	NM_000760	NP_000751	Q99062	CSF3R_HUMAN	colony stimulating factor 3 receptor isoform a	20					cell adhesion|defense response	extracellular region|integral to plasma membrane	cytokine receptor activity			central_nervous_system(2)|ovary(1)	3		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)			Filgrastim(DB00099)|Pegfilgrastim(DB00019)	CTCACTTCCGGGGAGCAGCAG	0.542													4	19					0	0	0.000602	0	0
GRIK3	2899	broad.mit.edu	37	1	37270690	37270690	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:37270690G>A	uc001caz.2	-	15	2598	c.2463C>T	c.(2461-2463)ATC>ATT	p.I821I	GRIK3_uc001cba.1_Silent_p.I821I	NM_000831	NP_000822	Q13003	GRIK3_HUMAN	glutamate receptor, ionotropic, kainate 3	821	Helical; (Potential).				negative regulation of synaptic transmission, glutamatergic|regulation of membrane potential|synaptic transmission	cell junction|dendrite cytoplasm|integral to plasma membrane|perikaryon|postsynaptic membrane|terminal button	adenylate cyclase inhibiting metabotropic glutamate receptor activity|extracellular-glutamate-gated ion channel activity|G-protein-coupled receptor binding|kainate selective glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)|breast(1)	7		Myeloproliferative disorder(586;0.0258)|all_neural(195;0.169)			L-Glutamic Acid(DB00142)	AGATGCCCCCGATCTTCTGGA	0.597													20	38					0	0	0.008871	0	0
MACF1	23499	broad.mit.edu	37	1	39847728	39847728	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:39847728C>T	uc010oiu.1	+	20	9203	c.9072C>T	c.(9070-9072)CTC>CTT	p.L3024L	MACF1_uc010ois.1_Silent_p.L2522L|MACF1_uc001cda.1_Silent_p.L2409L|MACF1_uc001cdc.1_Silent_p.L1588L	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	4589					cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			AATCCCAGCTCCGGCCGTGGC	0.562													6	29					0	0	0.001984	0	0
MACF1	23499	broad.mit.edu	37	1	39926444	39926444	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:39926444T>A	uc010oiu.1	+	57	16961	c.16830T>A	c.(16828-16830)TTT>TTA	p.F5610L	MACF1_uc010ois.1_Missense_Mutation_p.F5108L|MACF1_uc001cde.1_5'Flank|MACF1_uc001cdf.1_5'Flank	NM_033044	NP_149033	Q9UPN3	MACF1_HUMAN	microfilament and actin filament cross-linker	7066	EF-hand 1.				cell cycle arrest|Golgi to plasma membrane protein transport|positive regulation of Wnt receptor signaling pathway|regulation of epithelial cell migration|regulation of focal adhesion assembly|regulation of microtubule-based process|Wnt receptor signaling pathway|wound healing	Golgi apparatus|microtubule|ruffle membrane	actin filament binding|ATPase activity|calcium ion binding|microtubule binding			ovary(8)|breast(3)|central_nervous_system(3)|skin(2)	16	Lung NSC(20;5.57e-06)|Ovarian(52;0.00769)|Acute lymphoblastic leukemia(166;0.074)	Myeloproliferative disorder(586;0.0255)	OV - Ovarian serous cystadenocarcinoma(33;7.78e-19)|Epithelial(16;1.73e-17)|all cancers(16;2.49e-16)|LUSC - Lung squamous cell carcinoma(16;0.00146)|Lung(16;0.00204)			GTCAGGAGTTTATCGATGGCA	0.423													70	29					0	0	0.003610	0	0
HIVEP3	59269	broad.mit.edu	37	1	42047722	42047722	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:42047722G>A	uc001cgz.3	-	4	3960	c.2747C>T	c.(2746-2748)TCA>TTA	p.S916L	HIVEP3_uc001cha.3_Missense_Mutation_p.S916L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	916	Ser-rich.|No DNA binding activity or transactivation activity, but complete prevention of TRAF-dependent NF-Kappa-B activation; associates with TRAF2 and JUN (By similarity).				positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CTCCCCTGATGATTGGGCCAT	0.597													41	26					0	0	0.008740	0	0
TIE1	7075	broad.mit.edu	37	1	43772659	43772659	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:43772659C>T	uc001ciu.2	+	4	712	c.633C>T	c.(631-633)ATC>ATT	p.I211I	TIE1_uc010okd.1_Silent_p.I211I|TIE1_uc010oke.1_Silent_p.I166I|TIE1_uc009vwq.2_Silent_p.I211I|TIE1_uc010okf.1_5'UTR|TIE1_uc010okg.1_5'Flank|TIE1_uc010okb.1_Silent_p.I211I|TIE1_uc010okc.1_Silent_p.I211I	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	211	Extracellular (Potential).				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TTCGGCTCATCGTGCGGGGTC	0.637													7	15					0	0	0.001984	0	0
TIE1	7075	broad.mit.edu	37	1	43783010	43783010	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:43783010C>T	uc001ciu.2	+	15	2629	c.2550C>T	c.(2548-2550)TTC>TTT	p.F850F	TIE1_uc010oke.1_Silent_p.F805F|TIE1_uc009vwq.2_Silent_p.F806F|TIE1_uc010okg.1_Silent_p.F495F	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	850	ATP (By similarity).|Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				AGGGGAACTTCGGCCAGGTCA	0.612													35	15					0	0	0.007835	0	0
TIE1	7075	broad.mit.edu	37	1	43785140	43785140	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:43785140C>A	uc001ciu.2	+	19	3126	c.3047C>A	c.(3046-3048)CCT>CAT	p.P1016H	TIE1_uc010oke.1_Missense_Mutation_p.P971H|TIE1_uc009vwq.2_Missense_Mutation_p.P972H|TIE1_uc010okg.1_Missense_Mutation_p.P661H	NM_005424	NP_005415	P35590	TIE1_HUMAN	tyrosine kinase with immunoglobulin-like and	1016	Cytoplasmic (Potential).|Protein kinase.				mesoderm development	integral to plasma membrane	ATP binding|protein binding|transmembrane receptor protein tyrosine kinase activity			lung(3)|stomach(1)|salivary_gland(1)|ovary(1)|skin(1)	7	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GGGCGTCTCCCTGTGCGCTGG	0.597													6	85					0.00198382	0.00276662	0.001984	1	0
KLF17	128209	broad.mit.edu	37	1	44595442	44595442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:44595442C>T	uc001clp.2	+	2	557	c.499C>T	c.(499-501)CCA>TCA	p.P167S	KLF17_uc009vxf.1_Missense_Mutation_p.P130S	NM_173484	NP_775755	Q5JT82	KLF17_HUMAN	zinc finger protein 393	167					regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(166;0.155)					CACTGGAATCCCAATAATGTC	0.577													9	18					0	0	0.004482	0	0
CYP4A11	1579	broad.mit.edu	37	1	47407056	47407056	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:47407056C>T	uc001cqp.3	-	1	101	c.50G>A	c.(49-51)GGA>GAA	p.G17E	CYP4A11_uc001cqq.2_Missense_Mutation_p.G17E|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	17					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	TTGGAGGATTCCAGAGACATC	0.592													13	41					0	0	0.003163	0	0
C8B	732	broad.mit.edu	37	1	57425765	57425765	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:57425765G>A	uc001cyp.2	-	2	244	c.177C>T	c.(175-177)ACC>ACT	p.T59T	C8B_uc010oon.1_5'UTR|C8B_uc010ooo.1_Silent_p.T7T	NM_000066	NP_000057	P07358	CO8B_HUMAN	complement component 8, beta polypeptide	59					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	membrane attack complex		p.T59T(1)		central_nervous_system(2)|large_intestine(1)|ovary(1)	4						TGGGCATCAGGGTAACATCCA	0.483													29	16					0	0	0.008361	0	0
ALG6	29929	broad.mit.edu	37	1	63872018	63872018	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:63872018C>T	uc010oow.1	+	6	682	c.377C>T	c.(376-378)CCT>CTT	p.P126L	ALG6_uc001daz.2_RNA|ALG6_uc009waj.2_RNA	NM_013339	NP_037471	Q9Y672	ALG6_HUMAN	dolichyl pyrophosphate Man9GlcNAc2	126	Helical; (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity				0						ATTTACATACCTGCAGTGGTT	0.363													12	42					0	0	0.004007	0	0
UBE2U	148581	broad.mit.edu	37	1	64672498	64672498	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:64672498C>T	uc001dbn.1	+	3	444	c.200C>T	c.(199-201)CCT>CTT	p.P67L		NM_152489	NP_689702	Q5VVX9	UBE2U_HUMAN	ubiquitin-conjugating enzyme E2U (putative)	67							ATP binding|protein binding|ubiquitin-protein ligase activity				0						AACTATGCTCCTCCAGTTGTG	0.299													13	28					0	0	0.004007	0	0
PDE4B	5142	broad.mit.edu	37	1	66384348	66384348	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:66384348C>T	uc001dcn.2	+	3	302	c.111C>T	c.(109-111)ATC>ATT	p.I37I	PDE4B_uc009war.2_Intron|PDE4B_uc001dco.2_Silent_p.I37I	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	37					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	CACTTGGGATCGACCTCTGGA	0.438													7	33					0	0	0.001984	0	0
C1orf173	127254	broad.mit.edu	37	1	75072513	75072513	+	Missense_Mutation	SNP	C	T	T	rs144402838		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:75072513C>T	uc001dgg.2	-	10	1480	c.1261G>A	c.(1261-1263)GGA>AGA	p.G421R	uc001dgh.2_Intron|C1orf173_uc001dgi.3_Missense_Mutation_p.G215R	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	421	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						AGTTCCTCTCCTTTCTCAGTG	0.408													63	29					0	0	0.003610	0	0
CRYZ	1429	broad.mit.edu	37	1	75172857	75172857	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:75172857A>G	uc001dgk.2	-	8	1167	c.662T>C	c.(661-663)ATT>ACT	p.I221T	CRYZ_uc001dgj.2_Missense_Mutation_p.I221T|CRYZ_uc001dgl.2_Intron|CRYZ_uc001dgm.2_Missense_Mutation_p.I84T	NM_001130042	NP_001123514	Q08257	QOR_HUMAN	crystallin, zeta isoform a	221					protein homotetramerization|visual perception|xenobiotic catabolic process	cytosol|Golgi apparatus	mRNA 3'-UTR binding|NADPH binding|NADPH:quinone reductase activity|zinc ion binding				0					Dicumarol(DB00266)	CATTTCAATAATTATATCAAT	0.284													27	59					0	0	0.001786	0	0
LHX8	431707	broad.mit.edu	37	1	75608860	75608860	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:75608860C>T	uc001dgo.2	+	6	1111	c.447C>T	c.(445-447)GTC>GTT	p.V149V	LHX8_uc001dgq.2_Silent_p.V88V	NM_001001933	NP_001001933	Q68G74	LHX8_HUMAN	LIM homeobox 8	149	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)	3						CTGACTGGGTCCGGAGAGCCA	0.468													16	39					0	0	0.006122	0	0
ELTD1	64123	broad.mit.edu	37	1	79392653	79392653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:79392653G>A	uc001diq.3	-	8	1157	c.1001C>T	c.(1000-1002)TCA>TTA	p.S334L		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	334	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		TGAAATTACTGAAGATATGAC	0.323													18	32					0	0	0.004990	0	0
MCOLN2	255231	broad.mit.edu	37	1	85418174	85418175	+	Missense_Mutation	DNP	GG	AA	AA	rs138870286		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:85418174_85418175GG>AA	uc001dkm.2	-	5	845_846	c.604_605CC>TT	c.(604-606)CCT>TTT	p.P202F	MCOLN2_uc001dkn.2_RNA	NM_153259	NP_694991	Q8IZK6	MCLN2_HUMAN	mucolipin 2	202						integral to membrane	ion channel activity			ovary(3)|upper_aerodigestive_tract(1)	4				all cancers(265;0.0111)|Epithelial(280;0.0263)|OV - Ovarian serous cystadenocarcinoma(397;0.217)		CCAGTCCGGAGGCTTCTTGGAG	0.322													25	11					0	0	0.004672	0	0
COL24A1	255631	broad.mit.edu	37	1	86200455	86200455	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:86200455T>A	uc001dlj.2	-	59	5017	c.4975A>T	c.(4975-4977)AAA>TAA	p.K1659*	COL24A1_uc001dli.2_Nonsense_Mutation_p.K774*|COL24A1_uc010osd.1_Nonsense_Mutation_p.K959*|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	1659	Fibrillar collagen NC1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		GAAAGCACTTTAGGTTCAAGT	0.363													26	65					0	0	0.007291	0	0
CLCA2	9635	broad.mit.edu	37	1	86920861	86920861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:86920861C>T	uc001dlr.3	+	14	2645	c.2483C>T	c.(2482-2484)CCT>CTT	p.P828L		NM_006536	NP_006527	Q9UQC9	CLCA2_HUMAN	chloride channel accessory 2 precursor	828	Extracellular (Potential).				cell adhesion	basal plasma membrane|cell junction|extracellular region|integral to plasma membrane	chloride channel activity			ovary(1)|breast(1)|skin(1)	3		Lung NSC(277;0.238)		all cancers(265;0.0233)|Epithelial(280;0.0452)		AAGCGAAATCCTCAGCAAGCT	0.378													10	42					0	0	0.006214	0	0
CLCA4	22802	broad.mit.edu	37	1	87045096	87045096	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:87045096G>A	uc009wcs.2	+	13	2226	c.2182G>A	c.(2182-2184)GAG>AAG	p.E728K	CLCA4_uc009wct.2_Missense_Mutation_p.E491K|CLCA4_uc009wcu.2_Missense_Mutation_p.E548K	NM_012128	NP_036260	Q14CN2	CLCA4_HUMAN	chloride channel accessory 4	728						apical plasma membrane|extracellular region|integral to plasma membrane	chloride channel activity			ovary(2)	2		Lung NSC(277;0.238)		all cancers(265;0.0202)|Epithelial(280;0.0404)		GACCACCTTGGAGGATTTCAG	0.468													14	26					0	0	0.002450	0	0
GBP7	388646	broad.mit.edu	37	1	89615181	89615181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:89615181C>T	uc001dna.2	-	7	1085	c.946G>A	c.(946-948)GCA>ACA	p.A316T	GBP2_uc001dmy.1_RNA	NM_207398	NP_997281	Q8N8V2	GBP7_HUMAN	guanylate binding protein 4-like	316						integral to membrane	GTP binding|GTPase activity			ovary(1)|skin(1)	2		Lung NSC(277;0.0908)		all cancers(265;0.00835)|Epithelial(280;0.0322)		GCCAGAACTGCCATTGCATTC	0.547													9	18					0	0	0.004482	0	0
ABCA4	24	broad.mit.edu	37	1	94512554	94512554	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:94512554C>T	uc001dqh.2	-	19	2943	c.2839G>A	c.(2839-2841)GAC>AAC	p.D947N	ABCA4_uc010otn.1_Missense_Mutation_p.D873N	NM_000350	NP_000341	P78363	ABCA4_HUMAN	ATP-binding cassette, sub-family A member 4	947	Cytoplasmic.|ABC transporter 1.				phototransduction, visible light|visual perception	integral to plasma membrane|membrane fraction	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)|skin(4)|central_nervous_system(2)|upper_aerodigestive_tract(1)|breast(1)	12		all_lung(203;0.000757)|Lung NSC(277;0.00335)		all cancers(265;0.00432)|GBM - Glioblastoma multiforme(16;0.00715)|Epithelial(280;0.171)		TTCAGACGGTCCACAGCTGGC	0.537													48	89					0	0	0.003610	0	0
COL11A1	1301	broad.mit.edu	37	1	103453210	103453210	+	Silent	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:103453210A>C	uc001dul.2	-	30	2799	c.2481T>G	c.(2479-2481)CCT>CCG	p.P827P	COL11A1_uc001duk.2_Missense_Mutation_p.L18R|COL11A1_uc001dum.2_Silent_p.P839P|COL11A1_uc001dun.2_Silent_p.P788P|COL11A1_uc009weh.2_Silent_p.P711P	NM_001854	NP_001845	P12107	COBA1_HUMAN	alpha 1 type XI collagen isoform A	827	Triple-helical region.				collagen fibril organization|detection of mechanical stimulus involved in sensory perception of sound|visual perception	collagen type XI	extracellular matrix binding|extracellular matrix structural constituent|protein binding, bridging			ovary(6)|breast(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	12		all_epithelial(167;2.52e-07)|all_lung(203;3.11e-05)|Lung NSC(277;6.61e-05)|Breast(1374;0.181)		Lung(183;0.186)|all cancers(265;0.242)|Epithelial(280;0.248)		CTTGACCTGAAGGACCTGGGT	0.458													3	58					0	0	0.004672	0	0
C1orf59	113802	broad.mit.edu	37	1	109191228	109191228	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:109191228G>A	uc001dvt.3	-	8	1380	c.1142C>T	c.(1141-1143)GCT>GTT	p.A381V	C1orf59_uc001dvu.3_Missense_Mutation_p.A381V|C1orf59_uc009wer.2_3'UTR	NM_001102592	NP_001096062	Q5T8I9	HENMT_HUMAN	hypothetical protein LOC113802	381					gene silencing by RNA|piRNA metabolic process	P granule	metal ion binding|O-methyltransferase activity|RNA binding|RNA methyltransferase activity				0		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0152)|Lung(183;0.0895)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.163)		ACGCAGGTCAGCCACCACTGC	0.413													11	5					0	0	0.000978	0	0
GPR61	83873	broad.mit.edu	37	1	110085864	110085864	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:110085864C>T	uc001dxy.2	+	2	903	c.220C>T	c.(220-222)CGA>TGA	p.R74*		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	74	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		GCCTGCCCTCCGAAAATTTGT	0.597													22	23					0	0	0.002299	0	0
SLC16A4	9122	broad.mit.edu	37	1	110923715	110923715	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:110923715A>T	uc001dzo.1	-	5	597	c.415T>A	c.(415-417)TAC>AAC	p.Y139N	SLC16A4_uc009wfs.1_Missense_Mutation_p.Y91N|SLC16A4_uc001dzp.1_Missense_Mutation_p.Y139N|SLC16A4_uc010ovy.1_Missense_Mutation_p.Y77N|SLC16A4_uc001dzq.1_Missense_Mutation_p.Y77N|SLC16A4_uc010ovz.1_Missense_Mutation_p.Y29N	NM_004696	NP_004687	O15374	MOT5_HUMAN	solute carrier family 16, member 4	139	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction	monocarboxylic acid transmembrane transporter activity|symporter activity			ovary(3)	3		all_cancers(81;0.000476)|all_epithelial(167;0.000401)|all_lung(203;0.00277)|Lung NSC(277;0.0043)		Lung(183;0.0251)|all cancers(265;0.0766)|Epithelial(280;0.0807)|Colorectal(144;0.112)|LUSC - Lung squamous cell carcinoma(189;0.14)	Pyruvic acid(DB00119)	TTTTTGAAGTATTTGGTAGTT	0.388													11	21					0	0	0.001368	0	0
KCNA10	3744	broad.mit.edu	37	1	111060215	111060215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:111060215C>T	uc001dzt.1	-	1	1583	c.1195G>A	c.(1195-1197)GAT>AAT	p.D399N		NM_005549	NP_005540	Q16322	KCA10_HUMAN	potassium voltage-gated channel, shaker-related	399						voltage-gated potassium channel complex	intracellular cyclic nucleotide activated cation channel activity|voltage-gated potassium channel activity			ovary(3)|large_intestine(1)	4		all_cancers(81;4.57e-06)|all_epithelial(167;1.52e-05)|all_lung(203;0.000152)|Lung NSC(277;0.000301)		Lung(183;0.0238)|all cancers(265;0.0874)|Colorectal(144;0.103)|Epithelial(280;0.116)|LUSC - Lung squamous cell carcinoma(189;0.134)		TCTGGCTCATCCACCTCAGCA	0.537													16	12					0	0	0.003163	0	0
OVGP1	5016	broad.mit.edu	37	1	111957818	111957818	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:111957818G>A	uc001eba.2	-	11	1361	c.1305C>T	c.(1303-1305)ATC>ATT	p.I435I	OVGP1_uc001eaz.2_Silent_p.I397I|OVGP1_uc010owb.1_Silent_p.I83I	NM_002557	NP_002548	Q12889	OVGP1_HUMAN	oviductal glycoprotein 1 precursor	435					chitin catabolic process|female pregnancy|single fertilization	transport vesicle	cation binding|chitinase activity			ovary(4)|large_intestine(1)	5		all_cancers(81;8.18e-06)|all_epithelial(167;5.64e-06)|all_lung(203;0.000152)|Lung NSC(277;0.000302)		Lung(183;0.0253)|Colorectal(144;0.033)|all cancers(265;0.0552)|Epithelial(280;0.0802)|COAD - Colon adenocarcinoma(174;0.123)|LUSC - Lung squamous cell carcinoma(189;0.14)		ACTTTCCGTGGATCTCAGTGA	0.498													32	19					0	0	0.002096	0	0
KCND3	3752	broad.mit.edu	37	1	112524433	112524433	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:112524433C>T	uc001ebu.1	-	2	1396	c.916G>A	c.(916-918)GGC>AGC	p.G306S	KCND3_uc001ebv.1_Missense_Mutation_p.G306S	NM_004980	NP_004971	Q9UK17	KCND3_HUMAN	potassium voltage-gated channel, Shal-related	306	Helical; Voltage-sensor; Name=Segment S4; (Potential).					sarcolemma|voltage-gated potassium channel complex	A-type (transient outward) potassium channel activity|metal ion binding			ovary(2)|large_intestine(1)	3		all_cancers(81;8.52e-06)|all_epithelial(167;5.65e-06)|all_lung(203;2.72e-05)|Lung NSC(69;4.56e-05)		all cancers(265;0.056)|Lung(183;0.0576)|Colorectal(144;0.1)|Epithelial(280;0.104)|COAD - Colon adenocarcinoma(174;0.222)|LUSC - Lung squamous cell carcinoma(189;0.231)		ATCCGCAGGCCCTGGGAGTGG	0.582													4	20					0	0	0.003080	0	0
LRIG2	9860	broad.mit.edu	37	1	113655232	113655232	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:113655232C>T	uc001edf.1	+	14	2128	c.1930C>T	c.(1930-1932)CCT>TCT	p.P644S	LRIG2_uc009wgn.1_Missense_Mutation_p.P541S	NM_014813	NP_055628	O94898	LRIG2_HUMAN	leucine-rich repeats and immunoglobulin-like	644	Ig-like C2-type 2.|Extracellular (Potential).					cytoplasm|integral to membrane|plasma membrane				ovary(3)	3	Lung SC(450;0.246)	all_cancers(81;1.56e-05)|all_epithelial(167;2.62e-05)|all_lung(203;0.000665)|Lung NSC(69;0.000986)		Lung(183;0.0279)|Colorectal(144;0.0885)|COAD - Colon adenocarcinoma(174;0.134)|all cancers(265;0.139)|Epithelial(280;0.143)|LUSC - Lung squamous cell carcinoma(189;0.15)		TACTGACTTTCCTGCGGCTCG	0.498													27	21					0	0	0.007291	0	0
RSBN1	54665	broad.mit.edu	37	1	114319871	114319871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:114319871G>A	uc001edq.2	-	4	1655	c.1619C>T	c.(1618-1620)CCT>CTT	p.P540L	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	540						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		ATCTGCTGTAGGGATCATCTG	0.423													27	58					0	0	0.007291	0	0
DCLRE1B	64858	broad.mit.edu	37	1	114454172	114454172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:114454172C>T	uc001eeg.2	+	4	1129	c.958C>T	c.(958-960)CCG>TCG	p.P320S	DCLRE1B_uc001eeh.2_Missense_Mutation_p.P194S|DCLRE1B_uc001eei.2_Missense_Mutation_p.P194S	NM_022836	NP_073747	Q9H816	DCR1B_HUMAN	DNA cross-link repair 1B (PSO2 homolog, S.	320					cell cycle checkpoint|DNA repair|protection from non-homologous end joining at telomere|telomeric 3' overhang formation|telomeric loop formation	centrosome|chromosome, telomeric region|nucleus	5'-3' exonuclease activity|protein binding				0	Lung SC(450;0.184)	all_cancers(81;1.46e-05)|all_epithelial(167;2.42e-05)|all_lung(203;0.000353)|Lung NSC(69;0.000518)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GCCCCTGATTCCGGACTCTGT	0.552								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					10	19					0	0	0.006214	0	0
SYCP1	6847	broad.mit.edu	37	1	115537595	115537595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:115537595G>A	uc001efr.2	+	32	3095	c.2886G>A	c.(2884-2886)ATG>ATA	p.M962I	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Missense_Mutation_p.M962I|SYCP1_uc009wgw.2_Missense_Mutation_p.M937I	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	962	Arg/Lys-rich (basic).				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTGCTAAAATGGATAGAAAAA	0.363													30	15					0	0	0.001786	0	0
TTF2	8458	broad.mit.edu	37	1	117633165	117633165	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:117633165C>T	uc001egy.2	+	15	2528	c.2508C>T	c.(2506-2508)CCC>CCT	p.P836P		NM_003594	NP_003585	Q9UNY4	TTF2_HUMAN	transcription termination factor, RNA polymerase	836					mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|termination of RNA polymerase II transcription	cytoplasm|spliceosomal complex|transcription elongation factor complex	ATP binding|ATP-dependent helicase activity|DNA binding|DNA-dependent ATPase activity|protein binding|zinc ion binding			ovary(1)	1	Lung SC(450;0.225)	all_cancers(81;4.23e-06)|all_epithelial(167;3.65e-07)|all_lung(203;2.81e-06)|Lung NSC(69;1.98e-05)		Lung(183;0.0553)|Colorectal(144;0.179)|LUSC - Lung squamous cell carcinoma(189;0.19)		TGATACTGCCCCAGCGTAAAT	0.358													20	12					0	0	0.001882	0	0
WDR3	10885	broad.mit.edu	37	1	118494990	118494990	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:118494990C>T	uc010oxe.1	+	18	2041	c.1975C>T	c.(1975-1977)CAG>TAG	p.Q659*	WDR3_uc001ehi.2_Intron	NM_006784	NP_006775	Q9UNX4	WDR3_HUMAN	WD repeat-containing protein 3	659	WD 12.					nuclear membrane|nucleolus				upper_aerodigestive_tract(1)	1	Esophageal squamous(2;0.162)	all_cancers(81;2.72e-05)|Acute lymphoblastic leukemia(138;1e-08)|all_epithelial(167;4.4e-07)|all_lung(203;1.7e-06)|Lung NSC(69;1.98e-05)|Prostate(1639;0.00955)|Breast(1374;0.244)		OV - Ovarian serous cystadenocarcinoma(397;1.39e-08)|Epithelial(280;1.82e-07)|all cancers(265;2.04e-05)|Lung(183;0.0525)|BRCA - Breast invasive adenocarcinoma(282;0.0695)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.185)		TAAGATTAAACAGTGGGATGC	0.373													26	248					0	0	0.004656	0	0
SPAG17	200162	broad.mit.edu	37	1	118516144	118516144	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:118516144G>A	uc001ehk.2	-	44	6113	c.6045C>T	c.(6043-6045)TCC>TCT	p.S2015S		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	2015						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		CCTGCAGCAAGGACTGGGTTG	0.398													22	518					0	0	0.002299	0	0
SPAG17	200162	broad.mit.edu	37	1	118624213	118624213	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:118624213C>T	uc001ehk.2	-	14	1883	c.1815G>A	c.(1813-1815)GAG>GAA	p.E605E		NM_206996	NP_996879	Q6Q759	SPG17_HUMAN	sperm associated antigen 17	605						cilium|flagellar axoneme|microtubule				upper_aerodigestive_tract(2)|ovary(2)|large_intestine(1)|skin(1)	6	Esophageal squamous(2;0.0106)	all_cancers(81;0.0204)|all_lung(203;9.46e-05)|Lung NSC(69;0.000675)|all_epithelial(167;0.01)		Lung(183;0.0858)		GCTTCAGGCTCTCAAAAGTAA	0.438													13	419					0	0	0.003163	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056726	120056726	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:120056726G>A	uc001ehv.1	+	4	725	c.580G>A	c.(580-582)GGA>AGA	p.G194R	HSD3B1_uc001ehw.2_Missense_Mutation_p.G196R	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	194					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	CTATGGGGAAGGAAGCCGATT	0.498													18	870					0	0	0.002299	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056997	120056997	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:120056997G>T	uc001ehv.1	+	4	996	c.851G>T	c.(850-852)TGG>TTG	p.W284L	HSD3B1_uc001ehw.2_Missense_Mutation_p.W286L	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	284					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	GATTCCAGATGGAGCTTTCCT	0.478													19	926					0.00316338	0.00440965	0.003163	1	0
ZNF697	90874	broad.mit.edu	37	1	120166655	120166656	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:120166655_120166656GG>TT	uc001ehy.1	-	3	424_425	c.310_311CC>AA	c.(310-312)CCA>AAA	p.P104K		NM_001080470	NP_001073939	Q5TEC3	ZN697_HUMAN	zinc finger protein 697	104					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_neural(166;0.219)	all_lung(203;3.66e-05)|Lung NSC(69;0.000202)|all_epithelial(167;0.0266)		Lung(183;0.011)|LUSC - Lung squamous cell carcinoma(189;0.0577)		AGACAGTCCTGGGAACATCGCC	0.599													10	484					0	0	0.004672	0	0
HMGCS2	3158	broad.mit.edu	37	1	120295918	120295918	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:120295918G>T	uc001eid.2	-	7	1330	c.1279C>A	c.(1279-1281)CAG>AAG	p.Q427K	HMGCS2_uc010oxj.1_Missense_Mutation_p.Q385K|HMGCS2_uc001eie.2_Missense_Mutation_p.Q335K	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	427					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		GCAGCATCCTGGGATACTCGA	0.498													21	925					0.00074312	0.00103869	0.006122	1	0
HMGCS2	3158	broad.mit.edu	37	1	120299955	120299955	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:120299955G>A	uc001eid.2	-	5	1008	c.957C>T	c.(955-957)GAC>GAT	p.D319D	HMGCS2_uc010oxj.1_Silent_p.D277D|HMGCS2_uc001eie.2_Silent_p.D227D	NM_005518	NP_005509	P54868	HMCS2_HUMAN	hydroxymethylglutaryl-CoA synthase 2 isoform 1	319					acetoacetic acid biosynthetic process|cholesterol biosynthetic process|isoprenoid biosynthetic process|ketone body biosynthetic process	mitochondrial matrix	hydroxymethylglutaryl-CoA synthase activity			ovary(2)	2	all_cancers(5;6.38e-10)|all_epithelial(5;1.1e-10)|Melanoma(3;1.93e-05)|Breast(55;0.218)|all_neural(166;0.219)	all_lung(203;1.29e-06)|Lung NSC(69;9.35e-06)|all_epithelial(167;0.00124)		Lung(183;0.0112)|LUSC - Lung squamous cell carcinoma(189;0.0595)		CTGACAGGAAGTCATTGAACA	0.507													21	950					0	0	0.008871	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144879495	144879496	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:144879495_144879496GG>AA	uc001elw.3	-	27	4245_4246	c.3954_3955CC>TT	c.(3952-3957)CGCCGG>CGTTGG	p.R1319W	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Missense_Mutation_p.R1275W|PDE4DIP_uc001elv.3_Missense_Mutation_p.R326W	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1319					cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		GTTGAGCCCCGGCGTCCCTGCT	0.5			T	PDGFRB	MPD								532	100					0	0	0.004672	0	0
TARS2	80222	broad.mit.edu	37	1	150471388	150471388	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:150471388C>T	uc001euq.2	+	12	1424	c.1417C>T	c.(1417-1419)CAA>TAA	p.Q473*	TARS2_uc010pcd.1_RNA|TARS2_uc001eur.2_Nonsense_Mutation_p.Q391*|TARS2_uc009wlt.2_Nonsense_Mutation_p.Q99*|TARS2_uc009wls.2_Nonsense_Mutation_p.Q343*	NM_025150	NP_079426	Q9BW92	SYTM_HUMAN	threonyl-tRNA synthetase 2, mitochondrial	473					threonyl-tRNA aminoacylation	mitochondrial matrix	ATP binding|threonine-tRNA ligase activity			ovary(1)	1	all_cancers(9;3.13e-53)|all_epithelial(9;3.74e-43)|all_lung(15;2.43e-34)|Lung NSC(24;8.86e-31)|Breast(34;0.000326)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0395)|Hepatocellular(266;0.108)|Melanoma(130;0.128)|Colorectal(459;0.171)		UCEC - Uterine corpus endometrioid carcinoma (35;0.0757)|all cancers(9;1.51e-21)|BRCA - Breast invasive adenocarcinoma(12;0.000734)|LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.206)		L-Threonine(DB00156)	AGCAGAGATCCAAAGCTGTCT	0.557													31	46					0	0	0.002836	0	0
RFX5	5993	broad.mit.edu	37	1	151315884	151315884	+	Silent	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:151315884A>G	uc001exv.1	-	10	1006	c.792T>C	c.(790-792)TCT>TCC	p.S264S	RFX5_uc001exw.1_Silent_p.S264S|RFX5_uc009wmr.1_Silent_p.S264S|RFX5_uc010pcx.1_Silent_p.S224S	NM_001025603	NP_001020774	P48382	RFX5_HUMAN	regulatory factor X, 5	264						nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1	Lung SC(34;0.00471)|Ovarian(49;0.0147)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			TCTTTGGTTTAGATGACCGTT	0.517													18	21					0	0	0.007413	0	0
HRNR	388697	broad.mit.edu	37	1	152190978	152190978	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152190978C>T	uc001ezt.1	-	3	3203	c.3127G>A	c.(3127-3129)GGC>AGC	p.G1043S		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	1043	12.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGACCGGAGCCAGACTCATAT	0.577													81	88					0	0	0.003610	0	0
HRNR	388697	broad.mit.edu	37	1	152192069	152192069	+	Missense_Mutation	SNP	C	T	T	rs140281819		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152192069C>T	uc001ezt.1	-	3	2112	c.2036G>A	c.(2035-2037)GGG>GAG	p.G679E		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	679	6.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAGCCAGACCCATGTTGGCC	0.592													78	76					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152280391	152280391	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152280391G>A	uc001ezu.1	-	3	7007	c.6971C>T	c.(6970-6972)TCA>TTA	p.S2324L		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2324	Ser-rich.|Filaggrin 14.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCCTGCACTTGATCTTGCCTG	0.552									Ichthyosis				158	86					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152281798	152281798	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152281798G>A	uc001ezu.1	-	3	5600	c.5564C>T	c.(5563-5565)TCC>TTC	p.S1855F		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1855	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGCCCACGGGAGACATCAGA	0.547									Ichthyosis				117	158					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152285985	152285985	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152285985C>T	uc001ezu.1	-	3	1413	c.1377G>A	c.(1375-1377)GGG>GGA	p.G459G	uc001ezv.2_RNA	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	459	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGACCGTTCCCCTGACCGGC	0.587									Ichthyosis				69	80					0	0	0.003610	0	0
FLG2	388698	broad.mit.edu	37	1	152327430	152327430	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152327430C>T	uc001ezw.3	-	3	2905	c.2832G>A	c.(2830-2832)CAG>CAA	p.Q944Q	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	944	Ser-rich.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCAAAAGTCTGTCCTGAAC	0.493													85	259					0	0	0.003610	0	0
CRNN	49860	broad.mit.edu	37	1	152382338	152382338	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152382338C>T	uc001ezx.2	-	3	1294	c.1220G>A	c.(1219-1221)GGG>GAG	p.G407E		NM_016190	NP_057274	Q9UBG3	CRNN_HUMAN	cornulin	407					cell-cell adhesion|response to heat	cytoplasm|membrane	calcium ion binding			ovary(2)|skin(1)	3	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGTGCTTGCCCCAGTCTGGGC	0.612													22	33					0	0	0.001523	0	0
KPRP	448834	broad.mit.edu	37	1	152733095	152733095	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152733095C>T	uc001fal.1	+	2	1089	c.1031C>T	c.(1030-1032)CCT>CTT	p.P344L		NM_001025231	NP_001020402	Q5T749	KPRP_HUMAN	keratinocyte proline-rich protein	344	Pro-rich.					cytoplasm				ovary(4)|pancreas(1)	5	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)			CAGAGGTGTCCTGTTGAGATT	0.657													18	13					0	0	0.007413	0	0
SMCP	4184	broad.mit.edu	37	1	152857234	152857234	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:152857234C>T	uc001fat.2	+	2	481	c.336C>T	c.(334-336)TCC>TCT	p.S112S		NM_030663	NP_109588	P49901	MCSP_HUMAN	sperm mitochondria-associated cysteine-rich	112					penetration of zona pellucida|sperm motility	mitochondrial membrane					0	Lung NSC(65;3.97e-29)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AAAATGAGTCCAGGCCAAGCA	0.522													24	32					0	0	0.003330	0	0
SPRR2D	6703	broad.mit.edu	37	1	153012692	153012692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:153012692G>A	uc001fbb.2	-	2	191	c.131C>T	c.(130-132)CCC>CTC	p.P44L	SPRR2D_uc009wnz.2_RNA	NM_006945	NP_008876	P22532	SPR2D_HUMAN	small proline-rich protein 2D	44	3.|3 X 9 AA tandem repeats of P-K-C-P-[EQ]- P-C-P-[PS].				keratinization	cornified envelope|cytoplasm					0	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AGGTGGGCAGGGCTGTGGACA	0.612													38	98					0	0	0.007835	0	0
NUP210L	91181	broad.mit.edu	37	1	154042924	154042924	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:154042924C>T	uc001fdw.2	-	17	2451	c.2379G>A	c.(2377-2379)CTG>CTA	p.L793L	NUP210L_uc009woq.2_5'UTR|NUP210L_uc010peh.1_Silent_p.L793L	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	793						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			CTGTGTCCCTCAGTCTTGATA	0.338													14	24					0	0	0.001855	0	0
ATP8B2	57198	broad.mit.edu	37	1	154315294	154315295	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:154315294_154315295CC>TT	uc001fex.2	+	15	1409_1410	c.1409_1410CC>TT	c.(1408-1410)TCC>TTT	p.S470F		NM_020452	NP_065185	P98198	AT8B2_HUMAN	ATPase, class I, type 8B, member 2 isoform a	456	Cytoplasmic (Potential).				ATP biosynthetic process	plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(1)|skin(1)	2	all_lung(78;2.62e-30)|Lung NSC(65;3.94e-28)|Hepatocellular(266;0.0877)		LUSC - Lung squamous cell carcinoma(543;0.185)			GTTGACTTCTCCTTCAATCCTC	0.559													15	61					0	0	0.004672	0	0
KCNN3	3782	broad.mit.edu	37	1	154841962	154841962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:154841962G>A	uc001ffp.2	-	1	793	c.479C>T	c.(478-480)CCC>CTC	p.P160L	KCNN3_uc009wox.1_Missense_Mutation_p.P160L	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	165						integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			GTGCACCAGGGGGCTGGCCTG	0.647													22	12					0	0	0.004656	0	0
TRIM46	80128	broad.mit.edu	37	1	155152210	155152210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:155152210C>T	uc001fhs.1	+	8	1471	c.1388C>T	c.(1387-1389)ACC>ATC	p.T463I	RAG1AP1_uc010pey.1_Intron|TRIM46_uc009wpe.1_RNA|TRIM46_uc001fhq.2_RNA|TRIM46_uc001fhr.2_Missense_Mutation_p.T463I|TRIM46_uc001fht.1_RNA|TRIM46_uc010pfa.1_Missense_Mutation_p.T337I|TRIM46_uc001fhu.1_Missense_Mutation_p.T440I|TRIM46_uc009wpg.1_Missense_Mutation_p.T450I|TRIM46_uc001fhv.3_Missense_Mutation_p.T450I|TRIM46_uc001fhw.1_RNA	NM_025058	NP_079334	Q7Z4K8	TRI46_HUMAN	tripartite motif-containing 46	463	Fibronectin type-III.					intracellular	zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3	all_epithelial(22;5.72e-28)|all_lung(78;2.07e-24)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		Epithelial(20;6.62e-10)|all cancers(21;2.68e-09)|BRCA - Breast invasive adenocarcinoma(34;0.000752)|LUSC - Lung squamous cell carcinoma(543;0.193)			TGGCACTATACCGTTGAGTTC	0.662													9	16					0	0	0.004482	0	0
ASH1L	55870	broad.mit.edu	37	1	155319343	155319343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:155319343G>A	uc009wqq.2	-	18	7906	c.7426C>T	c.(7426-7428)CCA>TCA	p.P2476S	RAG1AP1_uc010pey.1_Intron|ASH1L_uc001fkt.2_Missense_Mutation_p.P2471S	NM_018489	NP_060959	Q9NR48	ASH1L_HUMAN	absent, small, or homeotic 1-like	2476	Bromo.				cell-cell signaling|DNA packaging|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	chromosome|Golgi apparatus|nucleus|tight junction	DNA binding|histone-lysine N-methyltransferase activity|zinc ion binding			skin(5)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	11	Hepatocellular(266;0.0997)|all_neural(408;0.129)|all_hematologic(923;0.145)		Epithelial(20;1.74e-08)|all cancers(21;3.29e-08)|BRCA - Breast invasive adenocarcinoma(34;0.021)			TTTTTCTTTGGGGGAAGGTTC	0.448													11	14					0	0	0.001368	0	0
SSR2	6746	broad.mit.edu	37	1	155989874	155989874	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:155989874G>A	uc001fmx.2	-	2	165	c.85C>T	c.(85-87)CTG>TTG	p.L29L	SSR2_uc001fmw.2_RNA|SSR2_uc001fmy.2_RNA|SSR2_uc010pgv.1_Silent_p.L48L|SSR2_uc010pgw.1_Silent_p.L48L	NM_003145	NP_003136	P43308	SSRB_HUMAN	signal sequence receptor, beta precursor	29	Lumenal (Potential).				cotranslational protein targeting to membrane	endoplasmic reticulum membrane|integral to membrane	signal sequence binding				0	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CTGTTCAGCAGTGATTTGGAA	0.478													22	32					0	0	0.003954	0	0
TMEM79	84283	broad.mit.edu	37	1	156261300	156261300	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:156261300G>A	uc010phi.1	+	4	1292	c.1096G>A	c.(1096-1098)GAG>AAG	p.E366K	TMEM79_uc001fod.2_Missense_Mutation_p.E207K|TMEM79_uc009wrw.2_Missense_Mutation_p.E366K|C1orf85_uc001fof.3_Intron|C1orf85_uc001fog.1_Intron	NM_032323	NP_115699	Q9BSE2	TMM79_HUMAN	transmembrane protein 79	366						integral to membrane				central_nervous_system(1)	1	Hepatocellular(266;0.158)					GGTGGAGCCGGAGCGCATGCT	0.677													52	55					0	0	0.003610	0	0
NES	10763	broad.mit.edu	37	1	156642501	156642501	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:156642501G>A	uc001fpq.2	-	4	1612	c.1479C>T	c.(1477-1479)TGC>TGT	p.C493C		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	493	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CTTCCCCTCGGCATATGCTGA	0.537													60	57					0	0	0.003610	0	0
SH2D2A	9047	broad.mit.edu	37	1	156779029	156779029	+	Missense_Mutation	SNP	C	T	T	rs144238677		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:156779029C>T	uc001fqd.2	-	7	1108	c.968G>A	c.(967-969)CGG>CAG	p.R323Q	SH2D2A_uc001fqc.1_Missense_Mutation_p.R295Q|SH2D2A_uc009wsh.2_Missense_Mutation_p.R333Q|SH2D2A_uc001fqe.2_Missense_Mutation_p.R305Q|SH2D2A_uc010phs.1_Missense_Mutation_p.R323Q	NM_003975	NP_003966	Q9NP31	SH22A_HUMAN	SH2 domain protein 2A isoform 2	323	Pro-rich.				angiogenesis|cell differentiation|signal transduction	cytoplasm|soluble fraction	SH3 domain binding|SH3/SH2 adaptor activity				0	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CCAGCTCTTCCGTAGGACAGG	0.612													28	92					0	0	0.008361	0	0
INSRR	3645	broad.mit.edu	37	1	156821680	156821680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:156821680C>T	uc010pht.1	-	3	1195	c.941G>A	c.(940-942)AGC>AAC	p.S314N	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Missense_Mutation_p.S314N	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	314					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					CTACACTCACCTGCTGCTATT	0.647													3	11					0	0	0.000248	0	0
INSRR	3645	broad.mit.edu	37	1	156823977	156823977	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:156823977G>A	uc010pht.1	-	2	458	c.204C>T	c.(202-204)TTC>TTT	p.F68F	NTRK1_uc001fqf.1_Intron|NTRK1_uc009wsi.1_Intron|INSRR_uc009wsj.1_Silent_p.F68F	NM_014215	NP_055030	P14616	INSRR_HUMAN	insulin receptor-related receptor precursor	68					protein autophosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|insulin receptor substrate binding|metal ion binding|phosphatidylinositol 3-kinase binding|transmembrane receptor protein tyrosine kinase activity			lung(11)|ovary(5)|skin(2)|kidney(1)|central_nervous_system(1)	20	all_hematologic(923;0.0839)|Hepatocellular(266;0.158)					TGAGGCCGCGGAAGTCCTCCC	0.632													10	15					0	0	0.000978	0	0
FCRL5	83416	broad.mit.edu	37	1	157494241	157494241	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:157494241G>A	uc001fqu.2	-	10	2225	c.2067C>T	c.(2065-2067)ATC>ATT	p.I689I	FCRL5_uc009wsm.2_Silent_p.I689I|FCRL5_uc010phv.1_Silent_p.I689I|FCRL5_uc010phw.1_Silent_p.I604I	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	689	Extracellular (Potential).|Ig-like C2-type 7.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACCAGTACAGGATTGGGGAGG	0.577													23	25					0	0	0.002780	0	0
FCRL3	115352	broad.mit.edu	37	1	157666086	157666086	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:157666086G>A	uc001frb.2	-	7	1168	c.876C>T	c.(874-876)ATC>ATT	p.I292I	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Silent_p.I292I|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Silent_p.I18I|FCRL3_uc001frc.1_Silent_p.I292I	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	292	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					CGGTGGGCCGGATCTCTAGAT	0.527													16	58					0	0	0.004990	0	0
FCRL1	115350	broad.mit.edu	37	1	157768028	157768028	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:157768028A>T	uc001frg.2	-	8	1150	c.1037T>A	c.(1036-1038)CTT>CAT	p.L346H	FCRL1_uc001frf.2_RNA|FCRL1_uc001frh.2_Missense_Mutation_p.L346H|FCRL1_uc001fri.2_Missense_Mutation_p.L307H|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	346	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity			skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			AGGGCTGGGAAGGCTCCTGCA	0.483													12	22					0	0	0.001368	0	0
CD1A	909	broad.mit.edu	37	1	158225110	158225110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:158225110C>T	uc001frt.2	+	2	828	c.295C>T	c.(295-297)CGT>TGT	p.R99C		NM_001763	NP_001754	P06126	CD1A_HUMAN	CD1A antigen precursor	99	Extracellular (Potential).				antigen processing and presentation|immune response	endosome membrane|integral to plasma membrane|MHC class I protein complex				pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)				Antithymocyte globulin(DB00098)	TGAGGGAATTCGTAGATACGC	0.468													6	27					0	0	0.001984	0	0
CD1E	913	broad.mit.edu	37	1	158325692	158325692	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:158325692G>A	uc001fse.2	+	4	940	c.701G>A	c.(700-702)GGA>GAA	p.G234E	CD1E_uc010pid.1_Missense_Mutation_p.G232E|CD1E_uc010pie.1_Missense_Mutation_p.G135E|CD1E_uc010pif.1_Missense_Mutation_p.G45E|CD1E_uc001fsd.2_Missense_Mutation_p.G234E|CD1E_uc001fsk.2_Missense_Mutation_p.G144E|CD1E_uc001fsj.2_Missense_Mutation_p.G144E|CD1E_uc001fsc.2_Missense_Mutation_p.G45E|CD1E_uc010pig.1_RNA|CD1E_uc001fsa.2_Missense_Mutation_p.G45E|CD1E_uc001fsf.2_Missense_Mutation_p.G234E|CD1E_uc001fry.2_Missense_Mutation_p.G234E|CD1E_uc001fsg.2_Missense_Mutation_p.G45E|CD1E_uc001fsh.2_Missense_Mutation_p.G45E|CD1E_uc001fsi.2_Missense_Mutation_p.G234E|CD1E_uc009wsv.2_Missense_Mutation_p.G135E|CD1E_uc001frz.2_Missense_Mutation_p.G144E|CD1E_uc009wsw.2_5'UTR	NM_030893	NP_112155	P15812	CD1E_HUMAN	CD1E antigen isoform a precursor	234	Ig-like.				antigen processing and presentation|immune response	early endosome|Golgi membrane|integral to plasma membrane|late endosome|lysosomal lumen				skin(3)	3	all_hematologic(112;0.0378)					CATGTCTCAGGATTCTACCCA	0.592													10	30					0	0	0.000978	0	0
OR10R2	343406	broad.mit.edu	37	1	158449913	158449913	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:158449913C>T	uc010pik.1	+	1	246	c.246C>T	c.(244-246)TTC>TTT	p.F82F	uc001fso.1_RNA	NM_001004472	NP_001004472	Q8NGX6	O10R2_HUMAN	olfactory receptor, family 10, subfamily R,	82	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(2)|skin(1)	3	all_hematologic(112;0.0378)					TGTACTTCTTCCTTGGCATTC	0.413													74	79					0	0	0.003610	0	0
SPTA1	6708	broad.mit.edu	37	1	158614043	158614043	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:158614043C>T	uc001fst.1	-	30	4537	c.4338G>A	c.(4336-4338)CAG>CAA	p.Q1446Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	1446	Spectrin 14.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					TCATTATTACCTGGGCAGTGA	0.289													24	21					0	0	0.003954	0	0
SPTA1	6708	broad.mit.edu	37	1	158637817	158637817	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:158637817C>T	uc001fst.1	-	15	2068	c.1869G>A	c.(1867-1869)CAG>CAA	p.Q623Q		NM_003126	NP_003117	P02549	SPTA1_HUMAN	spectrin, alpha, erythrocytic 1	623	Spectrin 7.				actin filament capping|actin filament organization|axon guidance|regulation of cell shape	cytosol|intrinsic to internal side of plasma membrane|spectrin|spectrin-associated cytoskeleton	actin filament binding|calcium ion binding|structural constituent of cytoskeleton			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|breast(1)	8	all_hematologic(112;0.0378)					CAAAGACTTGCTGCTTTTGAA	0.393													56	79					0	0	0.003610	0	0
PYHIN1	149628	broad.mit.edu	37	1	158909032	158909032	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:158909032A>G	uc001ftb.2	+	4	819	c.574A>G	c.(574-576)ACT>GCT	p.T192A	PYHIN1_uc001fta.3_Missense_Mutation_p.T192A|PYHIN1_uc001ftc.2_Missense_Mutation_p.T183A|PYHIN1_uc001ftd.2_Missense_Mutation_p.T192A|PYHIN1_uc001fte.2_Missense_Mutation_p.T183A	NM_152501	NP_689714	Q6K0P9	IFIX_HUMAN	pyrin and HIN domain family, member 1 alpha 1	192					cell cycle	nuclear speck				ovary(3)|pancreas(1)	4	all_hematologic(112;0.0378)					CACTTCCTCAACTGAGGTACA	0.498													16	66					0	0	0.008871	0	0
DARC	2532	broad.mit.edu	37	1	159176192	159176192	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:159176192C>T	uc001fto.2	+	2	1203	c.963C>T	c.(961-963)CTC>CTT	p.L321L	DARC_uc001ftp.3_Silent_p.L323L	NM_002036	NP_002027	Q16570	DUFFY_HUMAN	Duffy blood group antigen isoform b	321	Cytoplasmic (Potential).				defense response	integral to membrane|plasma membrane	C-C chemokine binding|chemokine receptor activity			ovary(1)|lung(1)	2	all_hematologic(112;0.0429)					CTCTGCCCCTCCCTGAAGGAT	0.557													57	182					0	0	0.003610	0	0
OR10J3	441911	broad.mit.edu	37	1	159283706	159283706	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:159283706C>T	uc010piu.1	-	1	744	c.744G>A	c.(742-744)GTG>GTA	p.V248V		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					GGATGATGACCACTGTGAGGT	0.512													9	53					0	0	0.006214	0	0
OR10J3	441911	broad.mit.edu	37	1	159283943	159283943	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:159283943G>A	uc010piu.1	-	1	507	c.507C>T	c.(505-507)TTC>TTT	p.F169F		NM_001004467	NP_001004467	Q5JRS4	O10J3_HUMAN	olfactory receptor, family 10, subfamily J,	169	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_hematologic(112;0.0429)					AGGCATCACAGAATGGCAGGC	0.502													20	18					0	0	0.008871	0	0
APCS	325	broad.mit.edu	37	1	159558477	159558477	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:159558477C>T	uc001ftv.2	+	2	747	c.651C>T	c.(649-651)ATC>ATT	p.I217I		NM_001639	NP_001630	P02743	SAMP_HUMAN	serum amyloid P component precursor	217	Pentaxin.				acute-phase response|chaperone-mediated protein complex assembly|protein folding	extracellular space	metal ion binding|sugar binding|unfolded protein binding			ovary(1)|breast(1)	2	all_hematologic(112;0.0429)					ATGTCATCATCAAACCCTTGG	0.463													41	40					0	0	0.003610	0	0
IGSF9	57549	broad.mit.edu	37	1	159907490	159907490	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:159907490T>G	uc001fur.2	-	4	584	c.386A>C	c.(385-387)CAT>CCT	p.H129P	IGSF9_uc001fuq.2_Missense_Mutation_p.H129P	NM_001135050	NP_001128522	Q9P2J2	TUTLA_HUMAN	immunoglobulin superfamily, member 9 isoform a	129	Extracellular (Potential).					cell junction|integral to membrane|synapse				ovary(2)|central_nervous_system(2)|large_intestine(1)	5	all_hematologic(112;0.0597)	Breast(1374;0.000126)	BRCA - Breast invasive adenocarcinoma(70;0.111)			GACTGTCAGATGCACCCAGGA	0.597													24	39					0	0	0.004656	0	0
KCNJ10	3766	broad.mit.edu	37	1	160011956	160011956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:160011956G>A	uc001fuw.1	-	2	517	c.367C>T	c.(367-369)CTT>TTT	p.L123F		NM_002241	NP_002232	P78508	IRK10_HUMAN	potassium inwardly-rectifying channel, subfamily	123						integral to plasma membrane	ATP binding|ATP-activated inward rectifier potassium channel activity			ovary(1)	1	all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			TGGGATTCAAGGGAGAAGAGG	0.577													9	38					0	0	0.006214	0	0
VANGL2	57216	broad.mit.edu	37	1	160389283	160389283	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:160389283C>T	uc001fwb.1	+	5	983	c.684C>T	c.(682-684)TTC>TTT	p.F228F	VANGL2_uc001fwc.1_Silent_p.F228F	NM_020335	NP_065068	Q9ULK5	VANG2_HUMAN	vang-like 2	228	Helical; Name=4; (Potential).				apical protein localization|heart looping|nonmotile primary cilium assembly	apical plasma membrane|integral to membrane				ovary(1)	1	all_cancers(52;1.08e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			CCCTTCTTTTCGTGCACTACC	0.647													13	31					0	0	0.002450	0	0
LY9	4063	broad.mit.edu	37	1	160783507	160783507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:160783507C>T	uc001fwu.2	+	3	586	c.536C>T	c.(535-537)TCC>TTC	p.S179F	LY9_uc010pjs.1_Missense_Mutation_p.S179F|LY9_uc001fwv.2_Missense_Mutation_p.S179F|LY9_uc001fww.2_Missense_Mutation_p.S179F|LY9_uc001fwx.2_Missense_Mutation_p.S179F|LY9_uc001fwy.1_Missense_Mutation_p.S81F|LY9_uc001fwz.2_5'Flank	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	179	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CTAATGTGCTCCGTGAAGGGG	0.532													29	36					0	0	0.007291	0	0
LY9	4063	broad.mit.edu	37	1	160788049	160788049	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:160788049A>C	uc001fwu.2	+	6	1434	c.1384A>C	c.(1384-1386)ATG>CTG	p.M462L	LY9_uc001fwv.2_Missense_Mutation_p.M462L|LY9_uc001fww.2_Missense_Mutation_p.M372L|LY9_uc001fwx.2_Missense_Mutation_p.M372L|LY9_uc001fwy.1_Missense_Mutation_p.M274L|LY9_uc001fwz.2_Missense_Mutation_p.M114L	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	462	Helical; (Potential).				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			GTTGTTCCTGATGGTTTGCCT	0.468													22	38					0	0	0.003954	0	0
ITLN2	142683	broad.mit.edu	37	1	160920899	160920899	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:160920899C>T	uc001fxd.2	-	4	433	c.375G>A	c.(373-375)GGG>GGA	p.G125G	ITLN2_uc009wts.2_Silent_p.G124G|ITLN2_uc010pju.1_Silent_p.G42G	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	125	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			AGTTGCCATCCCCCTCTGGGT	0.592													22	15					0	0	0.002299	0	0
FCGR3A	2214	broad.mit.edu	37	1	161514491	161514491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:161514491C>T	uc001gat.3	-	5	714	c.577G>A	c.(577-579)GGT>AGT	p.G193S	FCGR3A_uc001gar.2_Missense_Mutation_p.G229S|FCGR3A_uc001gas.2_Missense_Mutation_p.G228S|FCGR3A_uc009wuh.2_Missense_Mutation_p.G192S|FCGR3A_uc009wui.2_Missense_Mutation_p.G193S	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	193	Extracellular (Potential).				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	CATGTCTCACCTTGAGTGATG	0.507													13	25					0	0	0.006122	0	0
HSPA7	3311	broad.mit.edu	37	1	161577045	161577046	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:161577045_161577046CC>TT	uc010pkp.1	+	1	1197_1198	c.965_966CC>TT	c.(964-966)GCC>GTT	p.A322V		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						GTGGAGAAGGCCCTGCGGGATG	0.609													6	23					0	0	0.004672	0	0
LMX1A	4009	broad.mit.edu	37	1	165218847	165218847	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:165218847G>A	uc001gcy.1	-	3	515	c.294C>T	c.(292-294)TTC>TTT	p.F98F	LMX1A_uc001gcz.1_Silent_p.F98F	NM_177398	NP_796372	Q8TE12	LMX1A_HUMAN	LIM homeobox transcription factor 1, alpha	98	LIM zinc-binding 2.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(3)|upper_aerodigestive_tract(1)|pancreas(1)	5	all_hematologic(923;0.248)					CGATGGCCTCGAAGCAGCCCC	0.542													5	14					0	0	0.000602	0	0
RXRG	6258	broad.mit.edu	37	1	165398042	165398042	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:165398042G>A	uc001gda.2	-	2	511	c.211C>T	c.(211-213)CGA>TGA	p.R71*		NM_006917	NP_008848	P48443	RXRG_HUMAN	retinoid X receptor, gamma isoform a	71	Modulating (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	retinoid-X receptor activity|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Acitretin(DB00459)|Adapalene(DB00210)|Alitretinoin(DB00523)|Etretinate(DB00926)|Tretinoin(DB00755)	GTGATGACTCGATATGGAGAG	0.607													17	15					0	0	0.006122	0	0
MAEL	84944	broad.mit.edu	37	1	166974589	166974589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:166974589G>A	uc001gdy.1	+	8	871	c.800G>A	c.(799-801)CGA>CAA	p.R267Q	MAEL_uc001gdz.1_Missense_Mutation_p.R236Q|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	267					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						ACTTGGATTCGAAGCCTCCTA	0.403													17	44					0	0	0.004007	0	0
ADCY10	55811	broad.mit.edu	37	1	167802365	167802365	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:167802365C>T	uc001ger.2	-	25	3751	c.3453G>A	c.(3451-3453)AAG>AAA	p.K1151K	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Silent_p.K1059K|ADCY10_uc010plj.1_Silent_p.K998K	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1151					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						TCAGCATTTTCTTGGCAAGCA	0.428													53	176					0	0	0.003610	0	0
GPR161	23432	broad.mit.edu	37	1	168073859	168073859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:168073859G>A	uc001gfc.2	-	4	544	c.230C>T	c.(229-231)TCC>TTC	p.S77F	GPR161_uc001gfb.2_Intron|GPR161_uc010pll.1_Intron|GPR161_uc010plm.1_Intron|GPR161_uc009wvo.2_Missense_Mutation_p.S94F|GPR161_uc001gfd.2_Missense_Mutation_p.S77F|GPR161_uc010pln.1_Missense_Mutation_p.S97F|GPR161_uc001gfe.1_Missense_Mutation_p.S77F	NM_153832	NP_722561	Q8N6U8	GP161_HUMAN	G protein-coupled receptor 161 isoform 2	77	Helical; Name=2; (Potential).				multicellular organismal development	integral to membrane|plasma membrane	G-protein coupled receptor activity				0	all_hematologic(923;0.215)					CACCAACACGGACAGCAGGAA	0.537													14	49					0	0	0.003163	0	0
SELE	6401	broad.mit.edu	37	1	169697210	169697210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:169697210G>A	uc001ggm.3	-	8	1425	c.1268C>T	c.(1267-1269)CCC>CTC	p.P423L	C1orf112_uc001ggj.2_Intron	NM_000450	NP_000441	P16581	LYAM2_HUMAN	selectin E precursor	423	Sushi 4.|Extracellular (Potential).				actin filament-based process|activation of phospholipase C activity|calcium-mediated signaling|heterophilic cell-cell adhesion|leukocyte migration involved in inflammatory response|leukocyte tethering or rolling|positive regulation of receptor internalization|regulation of inflammatory response|response to interleukin-1|response to lipopolysaccharide|response to tumor necrosis factor	caveola|coated pit|cortical cytoskeleton|extracellular space|integral to membrane|perinuclear region of cytoplasm	oligosaccharide binding|phospholipase binding|sialic acid binding|transmembrane receptor activity			ovary(3)|skin(2)	5	all_hematologic(923;0.208)					TTCACATGTGGGCTTCTCGTT	0.448													54	72					0	0	0.003610	0	0
C1orf105	92346	broad.mit.edu	37	1	172417629	172417629	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:172417629G>A	uc001gik.2	+	3	352	c.156G>A	c.(154-156)ATG>ATA	p.M52I		NM_139240	NP_640333	O95561	CA105_HUMAN	hypothetical protein LOC92346	52										skin(1)	1						AGAAGAATATGAATTTGCCAA	0.333													63	68					0	0	0.003610	0	0
C1orf105	92346	broad.mit.edu	37	1	172417667	172417667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:172417667C>T	uc001gik.2	+	3	390	c.194C>T	c.(193-195)TCT>TTT	p.S65F		NM_139240	NP_640333	O95561	CA105_HUMAN	hypothetical protein LOC92346	65										skin(1)	1						GATGTTTTATCTAAGGTACTA	0.279													33	31					0	0	0.001786	0	0
TNFSF18	8995	broad.mit.edu	37	1	173010672	173010672	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:173010672C>T	uc001giu.2	-	3	436	c.435G>A	c.(433-435)ATG>ATA	p.M145I		NM_005092	NP_005083	Q9UNG2	TNF18_HUMAN	tumor necrosis factor (ligand) superfamily,	145	Extracellular (Potential).				anti-apoptosis|cell-cell signaling|immune response|signal transduction	extracellular space|integral to membrane	cytokine activity|tumor necrosis factor receptor binding			central_nervous_system(1)	1						GAGTTTGTATCATGTCTTTGT	0.373													17	65					0	0	0.004990	0	0
PRDX6	9588	broad.mit.edu	37	1	173454641	173454641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:173454641C>T	uc001giy.1	+	3	445	c.394C>T	c.(394-396)CGT>TGT	p.R132C		NM_004905	NP_004896	P30041	PRDX6_HUMAN	peroxiredoxin 6	132	Thioredoxin.				cell redox homeostasis|phospholipid catabolic process	cytoplasmic membrane-bounded vesicle|cytosol|lysosome	peroxiredoxin activity|phospholipase A2 activity|protein binding			central_nervous_system(1)	1						TGTGACAGCTCGTGTGGTAGG	0.473													20	48					0	0	0.001523	0	0
SLC9A11	284525	broad.mit.edu	37	1	173526501	173526501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:173526501C>T	uc001giz.2	-	10	1616	c.1193G>A	c.(1192-1194)CGA>CAA	p.R398Q	SLC9A11_uc009wwe.2_5'UTR|SLC9A11_uc010pmq.1_RNA	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	398					sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						TTCCACTTTTCGTTCAGCGAG	0.363													40	107					0	0	0.007835	0	0
RFWD2	64326	broad.mit.edu	37	1	176132980	176132980	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:176132980A>G	uc001gku.1	-	4	869	c.613T>C	c.(613-615)TTC>CTC	p.F205L	RFWD2_uc001gkv.1_Missense_Mutation_p.F205L|RFWD2_uc001gkw.1_Intron|RFWD2_uc009wwv.2_5'Flank|RFWD2_uc001gkt.1_Missense_Mutation_p.F64L	NM_022457	NP_071902	Q8NHY2	RFWD2_HUMAN	ring finger and WD repeat domain 2 isoform a	205	Nuclear localization signal 2.				DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest	centrosome|cytosol|focal adhesion|nuclear speck	protein binding|ubiquitin-protein ligase activity|zinc ion binding				0						TCCAATTTGAACCTCTTTTCC	0.269													22	26					0	0	0.008361	0	0
PAPPA2	60676	broad.mit.edu	37	1	176668462	176668462	+	Silent	SNP	G	A	A	rs147497362	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:176668462G>A	uc001gkz.2	+	8	4137	c.2973G>A	c.(2971-2973)AAG>AAA	p.K991K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	991					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGGAAAACAAGGAGTCAGTGC	0.547													71	67					0	0	0.003610	0	0
ASTN1	460	broad.mit.edu	37	1	176863960	176863960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:176863960G>A	uc001glc.2	-	17	2890	c.2678C>T	c.(2677-2679)TCC>TTC	p.S893F	ASTN1_uc001glb.1_Missense_Mutation_p.S893F|ASTN1_uc001gld.1_Missense_Mutation_p.S893F	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	901					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						ATCTGATGGGGAGTTGCCTGC	0.517													29	34					0	0	0.002445	0	0
FAM5B	57795	broad.mit.edu	37	1	177250217	177250217	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:177250217G>A	uc001glf.2	+	8	2217	c.1905G>A	c.(1903-1905)TGG>TGA	p.W635*	FAM5B_uc001glg.2_Nonsense_Mutation_p.W530*	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	635						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						GGAATAGGTGGAAGACTTTCT	0.498													24	23					0	0	0.002780	0	0
C1orf125	126859	broad.mit.edu	37	1	179347892	179347892	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:179347892G>A	uc001gmo.2	+	5	622	c.495G>A	c.(493-495)AAG>AAA	p.K165K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmn.1_5'UTR|C1orf125_uc010pnl.1_RNA|C1orf125_uc001gmp.2_Silent_p.K165K	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	165											0						TGCCCCATAAGGTAAATAAAG	0.323													19	35					0	0	0.008871	0	0
C1orf125	126859	broad.mit.edu	37	1	179497510	179497510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:179497510G>A	uc001gmo.2	+	23	2786	c.2659G>A	c.(2659-2661)GAA>AAA	p.E887K	C1orf125_uc009wxg.2_RNA|C1orf125_uc001gmp.2_Missense_Mutation_p.E813K|C1orf125_uc009wxh.2_RNA	NM_144696	NP_653297	Q5T1B0	AXDN1_HUMAN	hypothetical protein LOC126859 isoform 1	887	Glu-rich.										0						ATTCATTGGAGAAGATGAAAA	0.413													17	11					0	0	0.001882	0	0
MR1	3140	broad.mit.edu	37	1	181018307	181018307	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:181018307C>T	uc001goq.1	+	2	192	c.187C>T	c.(187-189)CGG>TGG	p.R63W	MR1_uc001gop.2_Missense_Mutation_p.R63W|MR1_uc001gor.1_Missense_Mutation_p.R63W|MR1_uc001gos.1_Missense_Mutation_p.R63W|MR1_uc010pns.1_Missense_Mutation_p.R63W	NM_001531	NP_001522	Q95460	HMR1_HUMAN	major histocompatibility complex, class	63	Extracellular (Potential).|Ligand-binding.|Alpha-1.				antigen processing and presentation of peptide antigen via MHC class I|immune response	endoplasmic reticulum|extracellular region|integral to membrane|MHC class I protein complex	MHC class I receptor activity			skin(1)	1						CAGTGTCACTCGGCAGAAGGA	0.572													13	12					0	0	0.002450	0	0
CACNA1E	777	broad.mit.edu	37	1	181741302	181741302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:181741302G>A	uc001gow.2	+	37	5239	c.5074G>A	c.(5074-5076)GAA>AAA	p.E1692K	CACNA1E_uc009wxs.2_Missense_Mutation_p.E1580K|CACNA1E_uc001gox.1_Missense_Mutation_p.E918K|CACNA1E_uc009wxt.2_Missense_Mutation_p.E918K	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1692	Extracellular (Potential).|IV.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GAACGAGAACGAACGCTGCGG	0.557													39	47					0	0	0.008740	0	0
SMG7	9887	broad.mit.edu	37	1	183514306	183514307	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:183514306_183514307CC>TT	uc001gqg.2	+	16	2351_2352	c.2229_2230CC>TT	c.(2227-2232)CCCCTT>CCTTTT	p.L744F	SMG7_uc010pob.1_Missense_Mutation_p.L727F|SMG7_uc001gqf.2_Missense_Mutation_p.L698F|SMG7_uc001gqh.2_Missense_Mutation_p.L698F|SMG7_uc001gqi.2_Missense_Mutation_p.L656F|SMG7_uc010poc.1_Missense_Mutation_p.L702F	NM_173156	NP_775179	Q92540	SMG7_HUMAN	SMG-7 homolog isoform 1	744	Gln/Pro-rich.				mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of dephosphorylation	cytoplasm|intermediate filament cytoskeleton|nucleus	protein phosphatase 2A binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CCCAGCAACCCCTTACATCTTT	0.545													9	70					0	0	0.004672	0	0
HMCN1	83872	broad.mit.edu	37	1	186064617	186064617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:186064617G>A	uc001grq.1	+	68	10766	c.10537G>A	c.(10537-10539)GGA>AGA	p.G3513R		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3513	Ig-like C2-type 33.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						AAATGAAGCTGGAGAAGTCAG	0.428													19	32					0	0	0.001882	0	0
HMCN1	83872	broad.mit.edu	37	1	186083197	186083197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:186083197C>T	uc001grq.1	+	73	11447	c.11218C>T	c.(11218-11220)CCA>TCA	p.P3740S		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	3740	Ig-like C2-type 36.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						TGAAGGTGTGCCAACTCCAAG	0.413													22	94					0	0	0.002780	0	0
HMCN1	83872	broad.mit.edu	37	1	186105887	186105887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:186105887C>T	uc001grq.1	+	87	13629	c.13400C>T	c.(13399-13401)CCT>CTT	p.P4467L	HMCN1_uc001grs.1_Missense_Mutation_p.P36L	NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	4467	Ig-like C2-type 44.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						ACTGGAGAGCCTCAACCAACC	0.443													10	42					0	0	0.008291	0	0
FAM5C	339479	broad.mit.edu	37	1	190067368	190067368	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:190067368C>T	uc001gse.1	-	8	2313	c.2081G>A	c.(2080-2082)GGA>GAA	p.G694E	FAM5C_uc010pot.1_Missense_Mutation_p.G592E	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	694						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					ATCCTGGGATCCCTGAGTATA	0.453													29	29					0	0	0.005443	0	0
FAM5C	339479	broad.mit.edu	37	1	190195314	190195314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:190195314G>A	uc001gse.1	-	6	1091	c.859C>T	c.(859-861)CCA>TCA	p.P287S	FAM5C_uc010pot.1_Missense_Mutation_p.P185S	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	287						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TTGCATTCTGGAAATTTGGGA	0.438													16	47					0	0	0.001523	0	0
CFH	3075	broad.mit.edu	37	1	196646648	196646648	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:196646648T>G	uc001gtj.3	+	5	710	c.470T>G	c.(469-471)ATT>AGT	p.I157S	CFH_uc001gti.3_Missense_Mutation_p.I157S|CFH_uc009wyw.2_Missense_Mutation_p.I157S|CFH_uc009wyx.2_Intron	NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	157	Sushi 3.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						AATGGAAAAATTGTCAGTAGT	0.353													29	26					0	0	0.008361	0	0
F13B	2165	broad.mit.edu	37	1	197029561	197029561	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:197029561A>G	uc001gtt.1	-	5	784	c.740T>C	c.(739-741)CTA>CCA	p.L247P		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	247	Sushi 4.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						AGATCCACTTAGATAATAATT	0.308													56	53					0	0	0.003610	0	0
ASPM	259266	broad.mit.edu	37	1	197099171	197099171	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:197099171G>T	uc001gtu.2	-	8	2760	c.2503C>A	c.(2503-2505)CTC>ATC	p.L835I	ASPM_uc001gtv.2_Missense_Mutation_p.L835I|ASPM_uc001gtw.3_Intron	NM_018136	NP_060606	Q8IZT6	ASPM_HUMAN	asp (abnormal spindle)-like, microcephaly	835					mitosis	cytoplasm|nucleus	calmodulin binding			ovary(4)|central_nervous_system(2)	6						AAAGATATGAGTTCTCCATAA	0.259													28	34					3.65163e-15	5.15995e-15	0.006320	1	0
CRB1	23418	broad.mit.edu	37	1	197407739	197407739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:197407739G>A	uc001gtz.2	+	10	3947	c.3812G>A	c.(3811-3813)GGA>GAA	p.G1271E	CRB1_uc010poz.1_Missense_Mutation_p.G1247E|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Missense_Mutation_p.G1159E|CRB1_uc010ppb.1_Missense_Mutation_p.G735E|CRB1_uc010ppd.1_Missense_Mutation_p.G752E|CRB1_uc001gub.1_Missense_Mutation_p.G920E	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	1271	Extracellular (Potential).|EGF-like 18.				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						TGCTACAATGGAGGCAACTGC	0.443													35	34					0	0	0.003271	0	0
LHX9	56956	broad.mit.edu	37	1	197898140	197898140	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:197898140C>T	uc001guk.1	+	5	1382	c.945C>T	c.(943-945)TTC>TTT	p.F315F	LHX9_uc001gui.1_Silent_p.F306F|LHX9_uc001guj.1_Intron	NM_020204	NP_064589	Q9NQ69	LHX9_HUMAN	LIM homeobox 9 isoform 1	315	Homeobox.				motor axon guidance|negative regulation of transcription, DNA-dependent	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(1)	1						AGGTTTGGTTCCAAAACGCAC	0.383													10	27					0	0	0.001368	0	0
NR5A2	2494	broad.mit.edu	37	1	200080397	200080397	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:200080397G>A	uc001gvb.2	+	6	1384	c.1178G>A	c.(1177-1179)CGA>CAA	p.R393Q	NR5A2_uc001gvc.2_Missense_Mutation_p.R347Q|NR5A2_uc009wzh.2_Missense_Mutation_p.R353Q|NR5A2_uc010pph.1_Missense_Mutation_p.R321Q	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	393					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CACATTTACCGACAAGTGGTA	0.383													27	20					0	0	0.002096	0	0
NR5A2	2494	broad.mit.edu	37	1	200080416	200080416	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:200080416G>A	uc001gvb.2	+	6	1403	c.1197G>A	c.(1195-1197)AAG>AAA	p.K399K	NR5A2_uc001gvc.2_Silent_p.K353K|NR5A2_uc009wzh.2_Silent_p.K359K|NR5A2_uc010pph.1_Silent_p.K327K	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	399					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					TACATGGAAAGGAAGGATCCA	0.408													21	25					0	0	0.002299	0	0
C1orf106	55765	broad.mit.edu	37	1	200880918	200880918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:200880918C>T	uc001gvo.2	+	9	1582	c.1552C>T	c.(1552-1554)CCG>TCG	p.P518S	C1orf106_uc010ppm.1_Missense_Mutation_p.P433S	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	518										skin(2)|ovary(1)	3						TGGCTATTTCCCGGCGGGGCG	0.731													9	15					0	0	0.006214	0	0
IGFN1	91156	broad.mit.edu	37	1	201195037	201195037	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:201195037G>T	uc001gwc.2	+	11	2824	c.2052G>T	c.(2050-2052)GAG>GAT	p.E684D	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						CTCCTGACGAGGCCCAGGATG	0.682													7	5					2.0095e-06	2.82278e-06	0.001984	1	0
LAD1	3898	broad.mit.edu	37	1	201356204	201356204	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:201356204C>T	uc001gwm.2	-	3	520	c.285G>A	c.(283-285)CGG>CGA	p.R95R	LAD1_uc009wzu.1_Silent_p.R117R	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	95						basement membrane	structural molecule activity				0						GCCTCTGCCTCCGCTCCTGCC	0.647													13	12					0	0	0.001368	0	0
NAV1	89796	broad.mit.edu	37	1	201751423	201751423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:201751423G>A	uc001gwu.2	+	6	2130	c.1783G>A	c.(1783-1785)GGC>AGC	p.G595S	NAV1_uc001gwv.1_Missense_Mutation_p.G103S|NAV1_uc001gww.1_Missense_Mutation_p.G204S|NAV1_uc001gwx.2_Missense_Mutation_p.G204S|NAV1_uc001gwy.1_5'UTR	NM_020443	NP_065176	Q8NEY1	NAV1_HUMAN	neuron navigator 1	595					cell differentiation|nervous system development	cytoplasm|microtubule	nucleoside-triphosphatase activity|nucleotide binding			central_nervous_system(3)|ovary(1)	4						GCCCCCCTCGGGCATTGCTCG	0.577													34	27					0	0	0.002836	0	0
ARL8A	127829	broad.mit.edu	37	1	202107544	202107544	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:202107544G>A	uc001gxk.1	-	2	322	c.156C>T	c.(154-156)ACC>ACT	p.T52T		NM_138795	NP_620150	Q96BM9	ARL8A_HUMAN	ADP-ribosylation factor-like 8A	52					cell division|chromosome segregation|mitosis|small GTPase mediated signal transduction	late endosome membrane|lysosomal membrane|midbody|spindle midzone	alpha-tubulin binding|beta-tubulin binding|GTP binding|GTPase activity			ovary(2)	2						TGAAACCCACGGTGGGGATCA	0.483													26	21					0	0	0.001786	0	0
PTPN7	5778	broad.mit.edu	37	1	202123350	202123350	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:202123350G>A	uc001gxm.1	-	6	701	c.570C>T	c.(568-570)CTC>CTT	p.L190L	PTPN7_uc001gxl.1_Silent_p.L229L|PTPN7_uc001gxn.1_Silent_p.L190L|PTPN7_uc010ppv.1_Silent_p.L9L|PTPN7_uc010ppw.1_Silent_p.L138L|PTPN7_uc010ppx.1_Silent_p.L264L|PTPN7_uc010ppy.1_Intron|PTPN7_uc001gxo.1_Silent_p.L142L	NM_002832	NP_002823	P35236	PTN7_HUMAN	protein tyrosine phosphatase, non-receptor type	190	Tyrosine-protein phosphatase.					cytosol|internal side of plasma membrane	protein binding|protein tyrosine phosphatase activity			skin(1)	1						GCATGACAATGAGGGACACTT	0.582													15	22					0	0	0.004007	0	0
SYT2	127833	broad.mit.edu	37	1	202571506	202571506	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:202571506C>T	uc001gye.2	-	5	826	c.633G>A	c.(631-633)AAG>AAA	p.K211K	SYT2_uc010pqb.1_Silent_p.K211K|SYT2_uc009xaf.2_Silent_p.K41K	NM_001136504	NP_001129976	Q8N9I0	SYT2_HUMAN	synaptotagmin II	211	Phospholipid binding (By similarity).|C2 1.|Cytoplasmic (Potential).				neurotransmitter secretion	cell junction|chromaffin granule membrane|endocytic vesicle membrane|integral to membrane|synaptic vesicle membrane	protein binding|transporter activity			ovary(2)|skin(1)	3			BRCA - Breast invasive adenocarcinoma(75;0.169)		Botulinum Toxin Type B(DB00042)	CCCTCAGCACCTTGAAGGTGA	0.507													51	57					0	0	0.003610	0	0
ADORA1	134	broad.mit.edu	37	1	203134668	203134668	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:203134668C>T	uc001gze.1	+	4	1054	c.621C>T	c.(619-621)ATC>ATT	p.I207I	FMOD_uc010pqi.1_Intron|ADORA1_uc001gzf.1_Silent_p.I207I|ADORA1_uc010pqg.1_Silent_p.I139I|ADORA1_uc009xak.1_Missense_Mutation_p.P133S|ADORA1_uc010pqh.1_Silent_p.I240I	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	207	Cytoplasmic (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	TCTACCTAATCCGCAAGCAGC	0.552													22	26					0	0	0.002299	0	0
SOX13	9580	broad.mit.edu	37	1	204093876	204093876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:204093876C>T	uc001ham.2	+	13	2078	c.1483C>T	c.(1483-1485)CCG>TCG	p.P495S	SOX13_uc010pqp.1_Missense_Mutation_p.P494S|SOX13_uc010pqq.1_Missense_Mutation_p.P362S	NM_005686	NP_005677	Q9UN79	SOX13_HUMAN	SRY-box 13	495					anatomical structure morphogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)|central_nervous_system(1)	2	all_cancers(21;0.0754)|Breast(84;0.116)|all_epithelial(62;0.189)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.109)			CAAGTACAAGCCGCGGCCCAA	0.627													5	3					0	0	0.001168	0	0
NFASC	23114	broad.mit.edu	37	1	204926913	204926913	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:204926913C>T	uc001hbj.2	+	8	993	c.665C>T	c.(664-666)ACC>ATC	p.T222I	NFASC_uc001hbh.2_Missense_Mutation_p.T222I|NFASC_uc010pqz.1_Missense_Mutation_p.T216I|NFASC_uc010pra.1_Missense_Mutation_p.T216I|NFASC_uc001hbi.2_Missense_Mutation_p.T216I|NFASC_uc009xbg.1_Missense_Mutation_p.T289I|NFASC_uc010prb.1_Missense_Mutation_p.T216I|NFASC_uc010prc.1_5'UTR|NFASC_uc001hbk.1_Missense_Mutation_p.T43I	NM_001005388	NP_001005388	O94856	NFASC_HUMAN	neurofascin isoform 1 precursor	222	Extracellular (Potential).|Ig-like C2-type 2.				axon guidance|cell adhesion|myelination|peripheral nervous system development	integral to membrane|node of Ranvier|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|skin(1)	6	all_cancers(21;0.0375)|Breast(84;0.0437)|all_epithelial(62;0.171)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.158)			TTCACCCACACCATCCAGCAG	0.567													10	54					0	0	0.008291	0	0
CDK18	5129	broad.mit.edu	37	1	205499796	205499796	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:205499796G>A	uc001hcr.2	+	15	1662	c.1443G>A	c.(1441-1443)AAG>AAA	p.K481K	CDK18_uc001hcp.2_Silent_p.K451K|CDK18_uc001hcq.2_Silent_p.K451K|CDK18_uc010prj.1_Silent_p.K362K|CDK18_uc001hcs.2_Silent_p.K362K|CDK18_uc001hct.2_RNA	NM_212503	NP_997668	Q07002	CDK18_HUMAN	PCTAIRE protein kinase 3 isoform a	449							ATP binding|cyclin-dependent protein kinase activity|protein binding|signal transducer activity			stomach(2)	2						AGCTCCAGAAGGACCCAGGCT	0.622													4	20					0	0	0.000602	0	0
SLC26A9	115019	broad.mit.edu	37	1	205897030	205897030	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:205897030C>T	uc001hdq.2	-	9	1215	c.1101G>A	c.(1099-1101)CAG>CAA	p.Q367Q	SLC26A9_uc001hdo.2_Silent_p.Q35Q|SLC26A9_uc001hdp.2_Silent_p.Q367Q	NM_052934	NP_443166	Q7LBE3	S26A9_HUMAN	solute carrier family 26, member 9 isoform a	367						integral to membrane	chloride channel activity|secondary active sulfate transmembrane transporter activity			ovary(1)|skin(1)	2	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0458)			CCAGAGCTACCTGGTTCGAAT	0.607													10	53					0	0	0.003163	0	0
IL20	50604	broad.mit.edu	37	1	207039657	207039657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:207039657G>A	uc001her.2	+	2	217	c.173G>A	c.(172-174)GGA>GAA	p.G58E	IL20_uc010pry.1_Missense_Mutation_p.G129E|IL20_uc009xby.2_Missense_Mutation_p.G58E	NM_018724	NP_061194	Q9NYY1	IL20_HUMAN	interleukin 20 precursor	58					positive regulation of keratinocyte differentiation|positive regulation of tyrosine phosphorylation of Stat3 protein|regulation of inflammatory response	extracellular space	cytokine activity|interleukin-20 receptor binding				0	Breast(84;0.201)			OV - Ovarian serous cystadenocarcinoma(81;0.00459)		GCCAAAGATGGAAACATTGAC	0.478													20	50					0	0	0.008871	0	0
CR1	1378	broad.mit.edu	37	1	207741343	207741343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:207741343G>A	uc001hfy.2	+	17	2917	c.2777G>A	c.(2776-2778)GGG>GAG	p.G926E	CR1_uc009xcl.1_Missense_Mutation_p.G476E|CR1_uc001hfx.2_Missense_Mutation_p.G1376E|CR1_uc009xck.1_Missense_Mutation_p.G476E	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	926	Extracellular (Potential).|Sushi 14.				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						GACCCTCAAGGGAATGGGGTT	0.547													26	38					0	0	0.004289	0	0
CR1L	1379	broad.mit.edu	37	1	207890877	207890877	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:207890877C>T	uc001hga.3	+	11	1604	c.1483C>T	c.(1483-1485)CCC>TCC	p.P495S	CR1L_uc001hfz.2_RNA|CR1L_uc001hgb.1_RNA	NM_175710	NP_783641	Q2VPA4	CR1L_HUMAN	complement component (3b/4b) receptor 1-like	495	Sushi 8.					cytoplasm|extracellular region|membrane					0						TGGAGATATTCCCTATGGAAA	0.458													27	76					0	0	0.006320	0	0
CAMK1G	57172	broad.mit.edu	37	1	209773327	209773327	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:209773327G>A	uc001hhd.2	+	3	195	c.93_splice	c.e3-1	p.S31_splice	CAMK1G_uc001hhf.3_Splice_Site_p.S31_splice|CAMK1G_uc001hhe.2_Splice_Site_p.S31_splice	NM_020439	NP_065172	Q96NX5	KCC1G_HUMAN	calcium/calmodulin-dependent protein kinase IG							Golgi membrane|plasma membrane	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			breast(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0475)		CTTCTCCTCAGAGGAGCTTTC	0.343													23	23					0	0	0.003330	0	0
HHAT	55733	broad.mit.edu	37	1	210761285	210761285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:210761285G>A	uc009xcx.2	+	10	1253	c.1087G>A	c.(1087-1089)GGG>AGG	p.G363R	HHAT_uc010psq.1_Missense_Mutation_p.G226R|HHAT_uc001hhz.3_Missense_Mutation_p.G363R|HHAT_uc010psr.1_Missense_Mutation_p.G364R|HHAT_uc010pss.1_Missense_Mutation_p.G318R|HHAT_uc009xcy.2_Missense_Mutation_p.G298R|HHAT_uc010pst.1_Missense_Mutation_p.G300R|HHAT_uc010psu.1_Missense_Mutation_p.G298R|HHAT_uc001hia.3_Missense_Mutation_p.G53R	NM_001122834	NP_001116306	Q5VTY9	HHAT_HUMAN	hedgehog acyltransferase	363	Helical; (Potential).				multicellular organismal development	endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(81;0.0136)|all cancers(67;0.161)|KIRC - Kidney renal clear cell carcinoma(1967;0.215)		TGGCCTGCTGGGGACACTGTT	0.557													19	28					0	0	0.001882	0	0
TRAF5	7188	broad.mit.edu	37	1	211534078	211534078	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:211534078T>A	uc001hih.2	+	6	638	c.578T>A	c.(577-579)GTA>GAA	p.V193E	TRAF5_uc001hii.2_Missense_Mutation_p.V193E|TRAF5_uc010psx.1_Missense_Mutation_p.V204E|TRAF5_uc010psy.1_Intron|TRAF5_uc001hij.2_Missense_Mutation_p.V193E	NM_004619	NP_004610	O00463	TRAF5_HUMAN	TNF receptor-associated factor 5	193	TRAF-type 2.				apoptosis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis	CD40 receptor complex|centrosome|internal side of plasma membrane	protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(2)|ovary(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00946)|all cancers(67;0.0808)|Epithelial(68;0.144)		GAATACCCAGTATTTTGTCCC	0.353													25	33					0	0	0.007291	0	0
NEK2	4751	broad.mit.edu	37	1	211847012	211847012	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:211847012G>A	uc001hir.1	-	3	514	c.368C>T	c.(367-369)GCC>GTC	p.A123V	NEK2_uc001hiq.1_Missense_Mutation_p.A123V|NEK2_uc001his.3_Missense_Mutation_p.A123V|NEK2_uc001hit.1_RNA	NM_002497	NP_002488	P51955	NEK2_HUMAN	NIMA-related kinase 2	123	Protein kinase.				cell division|centrosome separation|G2/M transition of mitotic cell cycle|meiosis|protein autophosphorylation|regulation of mitosis	centrosome|condensed chromosome kinetochore|cytosol|nucleolus	ATP binding|metal ion binding|protein binding|protein phosphatase binding|protein serine/threonine kinase activity			breast(2)|stomach(1)	3				OV - Ovarian serous cystadenocarcinoma(81;0.00203)|all cancers(67;0.0339)|Epithelial(68;0.0546)		TTCCTTCAGGGCCAGAGTCAA	0.418													33	29					0	0	0.003271	0	0
USH2A	7399	broad.mit.edu	37	1	216270453	216270453	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:216270453C>T	uc001hku.1	-	22	5117	c.4730G>A	c.(4729-4731)GGA>GAA	p.G1577E		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	1577	Laminin G-like 1.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATAAAGACGTCCCTTCTTCAA	0.279										HNSCC(13;0.011)			14	26					0	0	0.002450	0	0
HHIPL2	79802	broad.mit.edu	37	1	222696044	222696044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:222696044G>A	uc001hnh.1	-	9	2132	c.2074C>T	c.(2074-2076)CCC>TCC	p.P692S		NM_024746	NP_079022	Q6UWX4	HIPL2_HUMAN	HHIP-like 2 precursor	692					carbohydrate metabolic process	extracellular region	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding			ovary(1)	1				GBM - Glioblastoma multiforme(131;0.0185)		CGGACGTGGGGCCCCACTCTG	0.567													115	332					0	0	0.003610	0	0
EPHX1	2052	broad.mit.edu	37	1	226026479	226026479	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:226026479C>T	uc001hpk.2	+	4	569	c.489C>T	c.(487-489)CTC>CTT	p.L163L	EPHX1_uc001hpl.2_Silent_p.L163L	NM_001136018	NP_001129490	P07099	HYEP_HUMAN	epoxide hydrolase 1	163					aromatic compound catabolic process|response to toxin	endoplasmic reticulum membrane|integral to membrane|microsome	cis-stilbene-oxide hydrolase activity|epoxide hydrolase activity			ovary(3)|lung(1)	4	Breast(184;0.197)					TCATCCCACTCCTGACTGACC	0.572													47	36					0	0	0.003610	0	0
CABC1	56997	broad.mit.edu	37	1	227152872	227152872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:227152872C>T	uc001hqm.1	+	8	3768	c.349C>T	c.(349-351)CCT>TCT	p.P117S	CABC1_uc010pvp.1_Missense_Mutation_p.P80S|CABC1_uc001hqn.1_Missense_Mutation_p.P117S|CABC1_uc009xeq.1_Missense_Mutation_p.P65S|CABC1_uc010pvq.1_Intron|CABC1_uc010pvr.1_5'Flank	NM_020247	NP_064632	Q8NI60	ADCK3_HUMAN	chaperone, ABC1 activity of bc1 complex like	117					cell death	mitochondrion	ATP binding|protein serine/threonine kinase activity				0		Prostate(94;0.0771)				GGGCCCAGCTCCTGCCTACGT	0.682													5	17					0	0	0.000602	0	0
OBSCN	84033	broad.mit.edu	37	1	228466962	228466962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:228466962C>T	uc009xez.1	+	27	7257	c.7213C>T	c.(7213-7215)CCC>TCC	p.P2405S	OBSCN_uc001hsn.2_Missense_Mutation_p.P2405S|OBSCN_uc001hsp.1_Missense_Mutation_p.P104S|OBSCN_uc001hsq.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	2405					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GACCTCCATCCCCTCAGTGCG	0.637													12	18					0	0	0.003163	0	0
URB2	9816	broad.mit.edu	37	1	229771705	229771705	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:229771705C>T	uc001hts.1	+	4	1481	c.1345C>T	c.(1345-1347)CAG>TAG	p.Q449*	URB2_uc009xfd.1_Nonsense_Mutation_p.Q449*	NM_014777	NP_055592	Q14146	URB2_HUMAN	URB2 ribosome biogenesis 2 homolog	449						nucleolus				central_nervous_system(2)|ovary(1)	3						CAAAAAAGCCCAGGAGGCGCT	0.502													41	49					0	0	0.002522	0	0
DISC1	27185	broad.mit.edu	37	1	231906692	231906692	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:231906692C>T	uc001huz.2	+	6	1563	c.1510C>T	c.(1510-1512)CTG>TTG	p.L504L	TSNAX-DISC1_uc010pwg.1_Silent_p.L493L|TSNAX-DISC1_uc010pwh.1_Silent_p.L459L|TSNAX-DISC1_uc010pwi.1_Silent_p.L459L|TSNAX-DISC1_uc010pwj.1_Silent_p.L493L|TSNAX-DISC1_uc010pwk.1_Silent_p.L493L|TSNAX-DISC1_uc010pwl.1_RNA|DISC1_uc010pwq.1_Silent_p.L504L|DISC1_uc010pwr.1_Silent_p.L504L|DISC1_uc010pws.1_Silent_p.L504L|DISC1_uc010pwt.1_Silent_p.L504L|DISC1_uc010pwu.1_Silent_p.L154L|DISC1_uc010pwv.1_RNA|DISC1_uc010pww.1_Silent_p.L504L|DISC1_uc010pwx.1_RNA|DISC1_uc010pwy.1_RNA|DISC1_uc010pwz.1_RNA|DISC1_uc010pxa.1_RNA|DISC1_uc001huy.2_Silent_p.L504L|DISC1_uc010pxb.1_Silent_p.L504L|DISC1_uc010pxc.1_Silent_p.L504L|DISC1_uc010pxd.1_Silent_p.L149L|DISC1_uc010pxe.1_Silent_p.L504L|DISC1_uc009xfr.2_Silent_p.L459L|DISC1_uc010pxf.1_Silent_p.L504L|DISC1_uc010pxg.1_Silent_p.L504L|DISC1_uc010pxh.1_Silent_p.L536L|DISC1_uc010pxi.1_RNA|DISC1_uc010pxj.1_Silent_p.L149L|DISC1_uc010pxk.1_RNA|DISC1_uc010pxl.1_RNA|DISC1_uc010pxm.1_Intron|DISC1_uc010pxn.1_Silent_p.L149L|DISC1_uc001hva.2_Silent_p.L504L	NM_018662	NP_061132	Q9NRI5	DISC1_HUMAN	disrupted in schizophrenia 1 isoform L	504	Potential.|Necessary and sufficient for interaction with PCNT and localization at the centrosome.|Interaction with TRAF3IP1.|Required for localization to punctate cytoplasmic foci.				microtubule cytoskeleton organization|neuron migration|positive regulation of neuroblast proliferation|positive regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	centrosome|microtubule	protein binding			skin(1)	1		all_cancers(173;0.0208)|Prostate(94;0.0975)				GGGCTGCGACCTGACCCCACT	0.592													16	20					0	0	0.003163	0	0
KIAA1383	54627	broad.mit.edu	37	1	232942542	232942542	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:232942542G>A	uc001hvh.2	+	1	1905	c.1773G>A	c.(1771-1773)AAG>AAA	p.K591K		NM_019090	NP_061963	Q9P2G4	K1383_HUMAN	hypothetical protein LOC54627	449										ovary(1)	1		all_cancers(173;0.00528)|Prostate(94;0.122)|all_epithelial(177;0.169)				AAGCCAAGAAGGATAAGCGTT	0.413													7	23					0	0	0.001984	0	0
PCNXL2	80003	broad.mit.edu	37	1	233134174	233134174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:233134174C>T	uc001hvl.2	-	32	5849	c.5614G>A	c.(5614-5616)GAT>AAT	p.D1872N	PCNXL2_uc001hvk.1_Missense_Mutation_p.D524N|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1872						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GCATTGCAATCCTTCCGCATC	0.587													18	23					0	0	0.001882	0	0
KCNK1	3775	broad.mit.edu	37	1	233802489	233802489	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:233802489C>T	uc010pxo.1	+	2	672	c.504C>T	c.(502-504)TTC>TTT	p.F168F	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	168	Cytoplasmic (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	TCCTCTACTTCCACATCCGCT	0.607													7	31					0	0	0.001984	0	0
LYST	1130	broad.mit.edu	37	1	235827771	235827771	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:235827771A>C	uc001hxj.2	-	51	11364	c.11189T>G	c.(11188-11190)ATT>AGT	p.I3730S	LYST_uc001hxi.2_Missense_Mutation_p.I954S	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	3730	WD 6.				defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			TTACCTTACAATTCCATTTTC	0.378									Chediak-Higashi_syndrome				6	36					0	0	0.001984	0	0
GPR137B	7107	broad.mit.edu	37	1	236343290	236343290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:236343290C>T	uc001hxq.2	+	4	890	c.799C>T	c.(799-801)CAT>TAT	p.H267Y	GPR137B_uc001hxr.1_Missense_Mutation_p.H49Y|GPR137B_uc009xge.2_RNA	NM_003272	NP_003263	O60478	G137B_HUMAN	G protein-coupled receptor 137B	267	Extracellular (Potential).					integral to plasma membrane|membrane fraction					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.197)|Prostate(94;0.219)|Acute lymphoblastic leukemia(190;0.226)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)			CAAGAGCGTCCATTCCTTTGA	0.458													12	51					0	0	0.001855	0	0
EDARADD	128178	broad.mit.edu	37	1	236645793	236645793	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:236645793C>T	uc001hxu.1	+	6	557	c.492C>T	c.(490-492)ACC>ACT	p.T164T	EDARADD_uc001hxv.1_Silent_p.T154T	NM_145861	NP_665860	Q8WWZ3	EDAD_HUMAN	EDAR-associated death domain isoform A	164	Death.				cell differentiation|signal transduction	cytoplasm					0	Ovarian(103;0.0634)|Breast(184;0.247)	all_cancers(173;0.0232)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00117)			AGAGCCCCACCTTGGAGTTCT	0.572													9	19					0	0	0.004482	0	0
RYR2	6262	broad.mit.edu	37	1	237802470	237802470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:237802470C>T	uc001hyl.1	+	46	7204	c.7084C>T	c.(7084-7086)CCC>TCC	p.P2362S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2362	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CCGAGATGGTCCCTCACCAAA	0.438													11	13					0	0	0.001368	0	0
RYR2	6262	broad.mit.edu	37	1	237880614	237880614	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:237880614C>T	uc001hyl.1	+	72	10560	c.10440C>T	c.(10438-10440)ATC>ATT	p.I3480I	RYR2_uc010pxz.1_Silent_p.I435I	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3480					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			GGTTGAACATCTGTGCCCCTG	0.498													13	12					0	0	0.003163	0	0
FMN2	56776	broad.mit.edu	37	1	240370439	240370439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:240370439G>A	uc010pyd.1	+	5	2552	c.2327G>A	c.(2326-2328)GGA>GAA	p.G776E	FMN2_uc010pye.1_Missense_Mutation_p.G780E	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	776	Pro-rich.|FH1.				actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			GCTGAAAGTGGACCTCAGACA	0.572													7	41					0	0	0.004482	0	0
RGS7	6000	broad.mit.edu	37	1	241031931	241031931	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:241031931G>A	uc001hyv.2	-	9	895	c.565C>T	c.(565-567)CTT>TTT	p.L189F	RGS7_uc010pyh.1_Missense_Mutation_p.L163F|RGS7_uc010pyj.1_Missense_Mutation_p.L105F|RGS7_uc001hyu.2_Missense_Mutation_p.L189F|RGS7_uc009xgn.1_Missense_Mutation_p.L136F|RGS7_uc001hyw.2_Missense_Mutation_p.L189F|RGS7_uc001hyt.2_Missense_Mutation_p.L21F	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	189					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TGGCTGTCAAGGATCTTCCTT	0.458													26	39					0	0	0.006320	0	0
RGS7	6000	broad.mit.edu	37	1	241031944	241031944	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:241031944A>C	uc001hyv.2	-	9	882	c.552T>G	c.(550-552)ATT>ATG	p.I184M	RGS7_uc010pyh.1_Missense_Mutation_p.I158M|RGS7_uc010pyj.1_Missense_Mutation_p.I100M|RGS7_uc001hyu.2_Missense_Mutation_p.I184M|RGS7_uc009xgn.1_Missense_Mutation_p.I131M|RGS7_uc001hyw.2_Missense_Mutation_p.I184M|RGS7_uc001hyt.2_Missense_Mutation_p.I16M	NM_002924	NP_002915	P49802	RGS7_HUMAN	regulator of G-protein signaling 7	184					G-protein coupled receptor protein signaling pathway|intracellular signal transduction|negative regulation of signal transduction|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|heterotrimeric G-protein complex	GTPase activator activity|protein binding|signal transducer activity			ovary(4)|skin(2)|kidney(1)	7		all_cancers(173;0.0131)	OV - Ovarian serous cystadenocarcinoma(106;0.027)			TCTTCCTTTCAATCTTGTCTC	0.458													16	56					0	0	0.004990	0	0
PLD5	200150	broad.mit.edu	37	1	242287770	242287770	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:242287770C>T	uc001hzn.1	-	6	1060	c.933G>A	c.(931-933)TCG>TCA	p.S311S	PLD5_uc001hzl.3_Silent_p.S249S|PLD5_uc001hzm.3_Silent_p.S101S|PLD5_uc001hzo.1_Silent_p.S219S			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	311						integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			AACAACTCACCGATACAAATG	0.393													5	33					0	0	0.000602	0	0
KIF26B	55083	broad.mit.edu	37	1	245850440	245850440	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:245850440C>T	uc001ibf.1	+	12	4595	c.4155C>T	c.(4153-4155)ATC>ATT	p.I1385I	KIF26B_uc001ibg.1_Silent_p.I1003I|KIF26B_uc001ibh.1_Silent_p.I627I	NM_018012	NP_060482	Q2KJY2	KI26B_HUMAN	kinesin family member 26B	1385					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)	3	all_cancers(71;3.86e-05)|all_epithelial(71;0.000121)|Ovarian(71;0.0412)|all_lung(81;0.0498)|Lung NSC(105;0.0708)|Breast(184;0.127)		OV - Ovarian serous cystadenocarcinoma(106;0.022)			AGGGGTACATCCCCATGAAGA	0.582													3	10					0	0	0.000602	0	0
TFB2M	64216	broad.mit.edu	37	1	246711899	246711899	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:246711899G>A	uc001ibn.2	-	6	931	c.806C>T	c.(805-807)TCA>TTA	p.S269L	TFB2M_uc010pys.1_RNA	NM_022366	NP_071761	Q9H5Q4	TFB2M_HUMAN	transcription factor B2, mitochondrial	269					positive regulation of transcription, DNA-dependent|transcription initiation from mitochondrial promoter	mitochondrial nucleoid	protein binding|rRNA (adenine-N6,N6-)-dimethyltransferase activity|transcription cofactor activity			ovary(1)	1	all_cancers(71;4.25e-05)|all_epithelial(71;4.92e-06)|Ovarian(71;0.0254)|all_lung(81;0.0272)|Breast(184;0.0318)|Lung NSC(105;0.0376)		OV - Ovarian serous cystadenocarcinoma(106;0.00358)			ATCAAATGATGACCAAGGCTC	0.398													30	40					0	0	0.005524	0	0
NLRP3	114548	broad.mit.edu	37	1	247588301	247588301	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:247588301G>A	uc001icr.2	+	5	1694	c.1556G>A	c.(1555-1557)AGC>AAC	p.S519N	NLRP3_uc001ics.2_Missense_Mutation_p.S519N|NLRP3_uc001icu.2_Missense_Mutation_p.S519N|NLRP3_uc001icw.2_Missense_Mutation_p.S519N|NLRP3_uc001icv.2_Missense_Mutation_p.S519N|NLRP3_uc010pyw.1_Missense_Mutation_p.S517N|NLRP3_uc001ict.1_Missense_Mutation_p.S517N	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	519	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			AAGTTCTACAGCTTCATCCAC	0.507													26	14					0	0	0.007291	0	0
OR2C3	81472	broad.mit.edu	37	1	247695323	247695323	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:247695323G>A	uc009xgy.2	-	2	853	c.491C>T	c.(490-492)ACC>ATC	p.T164I	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	164	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			TAGGAGCATGGTGAGCGTGGA	0.547													12	10					0	0	0.001368	0	0
OR2G2	81470	broad.mit.edu	37	1	247752097	247752097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:247752097G>A	uc010pyy.1	+	1	436	c.436G>A	c.(436-438)GCC>ACC	p.A146T		NM_001001915	NP_001001915	Q8NGZ5	OR2G2_HUMAN	olfactory receptor, family 2, subfamily G,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.017)			TCTCTGCATGGCCTTGGCATC	0.567													56	61					0	0	0.003610	0	0
OR1C1	26188	broad.mit.edu	37	1	247920864	247920864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:247920864G>A	uc010pza.1	-	1	845	c.845C>T	c.(844-846)GCT>GTT	p.A282V		NM_012353	NP_036485	Q15619	OR1C1_HUMAN	olfactory receptor, family 1, subfamily C,	282	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;4.34e-05)|all_epithelial(71;1.13e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0786)|Lung NSC(105;0.0858)	all_cancers(173;0.0247)	OV - Ovarian serous cystadenocarcinoma(106;0.0168)			CAGCATCGGAGCCACCATTGA	0.473													37	44					0	0	0.007835	0	0
OR2W3	343171	broad.mit.edu	37	1	248059200	248059200	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:248059200C>T	uc001idp.1	+	3	581	c.312C>T	c.(310-312)TTC>TTT	p.F104F	OR2W3_uc010pzb.1_Silent_p.F104F	NM_001001957	NP_001001957	Q7Z3T1	OR2W3_HUMAN	olfactory receptor, family 2, subfamily W,	104	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)|pancreas(1)	3	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0319)			TCTTCCTGTTCCTGGGTCTGG	0.552													11	52					0	0	0.008291	0	0
OR14C36	127066	broad.mit.edu	37	1	248512199	248512199	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:248512199C>T	uc010pzl.1	+	1	123	c.123C>T	c.(121-123)ATC>ATT	p.I41I		NM_001001918	NP_001001918	Q8NHC7	O14CZ_HUMAN	olfactory receptor, family 14, subfamily C,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3						TGGGAAACATCCTCATTGTGA	0.423													59	50					0	0	0.003610	0	0
TUBB8	347688	broad.mit.edu	37	10	93719	93719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:93719C>T	uc001ifi.2	-	4	613	c.613G>A	c.(613-615)GAA>AAA	p.E205K	TUBB8_uc009xhe.2_Missense_Mutation_p.E168K|TUBB8_uc010pzs.1_Missense_Mutation_p.E133K	NM_177987	NP_817124	Q3ZCM7	TBB8_HUMAN	tubulin, beta 8 isoform 1	205					microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity			ovary(1)	1		all_cancers(4;0.00131)|all_lung(4;0.000777)|Lung NSC(4;0.0043)|all_epithelial(10;0.0154)|Colorectal(49;0.235)		Epithelial(11;0.00341)|all cancers(11;0.00922)|OV - Ovarian serous cystadenocarcinoma(14;0.0508)|Lung(33;0.132)		TACAGAGCTTCGTTATCTATG	0.537													30	44					0	0	0.007291	0	0
PITRM1	10531	broad.mit.edu	37	10	3180261	3180261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:3180261G>A	uc010qah.1	-	24	2814	c.2782C>T	c.(2782-2784)CCG>TCG	p.P928S	PITRM1_uc001igr.1_3'UTR|PITRM1_uc001igs.1_Missense_Mutation_p.P131S|PITRM1_uc001igt.1_Missense_Mutation_p.P1026S			E7ES23	E7ES23_HUMAN	SubName: Full=cDNA FLJ54065, moderately similar to Mus musculus pitrilysin metallepetidase 1 (Pitrm1), mRNA;	928					proteolysis		metalloendopeptidase activity|zinc ion binding			pancreas(1)	1						GCAATTTTCGGGTTCTCGGGT	0.587													3	3					0	0	0.004672	0	0
KLF6	1316	broad.mit.edu	37	10	3822344	3822344	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:3822344G>A	uc001iha.2	-	3	1021	c.754C>T	c.(754-756)CGA>TGA	p.R252*	KLF6_uc010qaj.1_Intron|KLF6_uc010qak.1_RNA|KLF6_uc010qal.1_Nonsense_Mutation_p.R210*	NM_001300	NP_001291	Q99612	KLF6_HUMAN	Kruppel-like factor 6 isoform A	252	C2H2-type 2.				B cell differentiation	nucleus	zinc ion binding			central_nervous_system(3)|lung(1)	4				Colorectal(1;0.238)		GTGTGCTTTCGGAAGTGCCTG	0.542													25	19					0	0	0.005443	0	0
AKR1CL1	340811	broad.mit.edu	37	10	5203729	5203729	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:5203729C>T	uc009xhz.2	-	4		c.463G>A				NR_027916				Homo sapiens cDNA FLJ16347 fis, clone TESTI2036288, moderately similar to PROSTAGLANDIN-F SYNTHASE 1 (EC 1.1.1.188).												0						TCAGGAAGAACCCTGGAAACC	0.393													21	35					0	0	0.003330	0	0
ITIH5	80760	broad.mit.edu	37	10	7621809	7621809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:7621809C>T	uc001ijq.2	-	9	1406	c.1327G>A	c.(1327-1329)GAC>AAC	p.D443N	ITIH5_uc001ijp.2_Missense_Mutation_p.D229N|ITIH5_uc001ijr.1_Missense_Mutation_p.D443N	NM_030569	NP_085046	Q86UX2	ITIH5_HUMAN	inter-alpha trypsin inhibitor heavy chain	443	VWFA.				hyaluronan metabolic process	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|central_nervous_system(2)	4						AGCCTGAAGTCCACGTCGTTG	0.627													13	39					0	0	0.001368	0	0
TAF3	83860	broad.mit.edu	37	10	8051254	8051254	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:8051254C>T	uc010qbd.1	+	5	2529	c.2529C>T	c.(2527-2529)CCC>CCT	p.P843P		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	843					maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						CCAAAGCCCCCGTGCGCAGCG	0.383													4	4					0	0	0.000248	0	0
ITGA8	8516	broad.mit.edu	37	10	15701017	15701017	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:15701017T>G	uc001ioc.1	-	10	929	c.929A>C	c.(928-930)CAG>CCG	p.Q310P	ITGA8_uc010qcb.1_Missense_Mutation_p.Q295P	NM_003638	NP_003629	P53708	ITA8_HUMAN	integrin, alpha 8 precursor	310	Extracellular (Potential).|FG-GAP 4.				cell differentiation|cell-cell adhesion|cell-matrix adhesion|integrin-mediated signaling pathway|nervous system development	integrin complex	receptor activity			ovary(3)|lung(3)	6						CGTGAAATTCTGAATAAACGT	0.303													9	34					0	0	0.008291	0	0
CUBN	8029	broad.mit.edu	37	10	16916440	16916440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:16916440C>T	uc001ioo.2	-	58	9221	c.9169G>A	c.(9169-9171)GAC>AAC	p.D3057N	CUBN_uc009xjq.1_RNA|CUBN_uc009xjr.1_Missense_Mutation_p.D413N	NM_001081	NP_001072	O60494	CUBN_HUMAN	cubilin precursor	3057	CUB 23.				cholesterol metabolic process|cobalamin transport|hormone biosynthetic process|lipoprotein metabolic process|receptor-mediated endocytosis|tissue homeostasis|vitamin D metabolic process	brush border membrane|cytosol|endosome membrane|extrinsic to external side of plasma membrane|lysosomal lumen|lysosomal membrane	calcium ion binding|cobalamin binding|protein homodimerization activity|receptor activity|transporter activity			ovary(9)|breast(4)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|kidney(1)	19					Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	TTTGGGTAGTCTGCGTATGAA	0.423													17	50					0	0	0.004990	0	0
CACNB2	783	broad.mit.edu	37	10	18789789	18789789	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:18789789G>A	uc001ipr.2	+	5	565	c.505G>A	c.(505-507)GAA>AAA	p.E169K	CACNB2_uc009xjz.1_Intron|CACNB2_uc001ips.2_Missense_Mutation_p.E169K|CACNB2_uc001ipt.2_Missense_Mutation_p.E169K|CACNB2_uc010qcl.1_RNA|CACNB2_uc001ipu.2_Missense_Mutation_p.E141K|CACNB2_uc001ipv.2_Missense_Mutation_p.E141K|CACNB2_uc009xka.1_Missense_Mutation_p.E141K|CACNB2_uc001ipw.2_Missense_Mutation_p.E114K|CACNB2_uc001ipx.2_Missense_Mutation_p.E114K|CACNB2_uc009xkb.1_Missense_Mutation_p.E115K|CACNB2_uc010qcm.1_Missense_Mutation_p.E115K|CACNB2_uc001ipz.2_Missense_Mutation_p.E115K|CACNB2_uc001ipy.2_Missense_Mutation_p.E115K|CACNB2_uc010qcn.1_Missense_Mutation_p.E121K|CACNB2_uc010qco.1_Missense_Mutation_p.E121K|CACNB2_uc001iqa.2_Missense_Mutation_p.E121K	NM_201596	NP_963890	Q08289	CACB2_HUMAN	calcium channel, voltage-dependent, beta 2	169	SH3.				axon guidance|neuromuscular junction development	integral to plasma membrane|sarcolemma|voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			large_intestine(1)|central_nervous_system(1)|skin(1)	3					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	AGAAGGCTGTGAAATCGGATT	0.408													14	42					0	0	0.003163	0	0
ARMC3	219681	broad.mit.edu	37	10	23235172	23235172	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:23235172T>A	uc001irm.3	+	3	231	c.148T>A	c.(148-150)TAT>AAT	p.Y50N	ARMC3_uc010qcv.1_Missense_Mutation_p.Y50N|ARMC3_uc010qcw.1_Intron	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	50	ARM 1.						binding				0						TGAAGCCATTTATAAATTTGC	0.313													17	89					0	0	0.006122	0	0
ARMC3	219681	broad.mit.edu	37	10	23250858	23250858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:23250858C>T	uc001irm.3	+	7	666	c.583C>T	c.(583-585)CCT>TCT	p.P195S	ARMC3_uc010qcv.1_Missense_Mutation_p.P195S|ARMC3_uc010qcw.1_Intron	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	195	ARM 5.						binding				0						TGCAATACCTCCTATCTTAGA	0.353													15	28					0	0	0.003163	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24896728	24896728	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:24896728G>T	uc001isb.2	-	10	3014	c.2527C>A	c.(2527-2529)CCT>ACT	p.P843T	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Missense_Mutation_p.P843T|ARHGAP21_uc010qdc.1_Missense_Mutation_p.P678T	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	842					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						GTGAGGCAAGGAGGAACTGTT	0.478													12	51					6.31663e-08	8.88518e-08	0.003163	1	0
PRTFDC1	56952	broad.mit.edu	37	10	25145914	25145914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:25145914C>T	uc001ise.1	-	6	463	c.434G>A	c.(433-435)GGA>GAA	p.G145E	PRTFDC1_uc010qdd.1_Missense_Mutation_p.G145E|PRTFDC1_uc001isf.1_RNA|PRTFDC1_uc009xkm.1_RNA	NM_020200	NP_064585	Q9NRG1	PRDC1_HUMAN	phosphoribosyl transferase domain containing 1	145	GMP.				adenine salvage|central nervous system neuron development|cerebral cortex neuron differentiation|cytolysis|dendrite morphogenesis|GMP salvage|grooming behavior|hypoxanthine metabolic process|IMP salvage|lymphocyte proliferation|positive regulation of dopamine metabolic process|purine ribonucleoside salvage|response to amphetamine|striatum development	cytosol	hypoxanthine phosphoribosyltransferase activity|magnesium ion binding|nucleotide binding|protein homodimerization activity			ovary(1)	1						CCTCCCAGTTCCGACAACATC	0.408													14	41					0	0	0.003163	0	0
GPR158	57512	broad.mit.edu	37	10	25464474	25464474	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:25464474G>A	uc001isj.2	+	1	185	c.125G>A	c.(124-126)GGG>GAG	p.G42E	LOC100128811_uc010qde.1_Intron	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	42	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						ACCCCGAAGGGGAAGCCGCAC	0.692													9	18					0	0	0.004482	0	0
YME1L1	10730	broad.mit.edu	37	10	27404987	27404987	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:27404987A>G	uc001iti.2	-	18	2273	c.2091_splice	c.e18+1	p.K697_splice	YME1L1_uc001itj.2_Splice_Site_p.K640_splice|YME1L1_uc010qdl.1_Splice_Site_p.K607_splice|YME1L1_uc009xkv.2_Splice_Site	NM_139312	NP_647473	Q96TA2	YMEL1_HUMAN	YME1-like 1 isoform 1						protein catabolic process|proteolysis	membrane|mitochondrion	ATP binding|metal ion binding|metalloendopeptidase activity|nucleoside-triphosphatase activity			ovary(1)	1						AAAATCTATTACCTTTTCACT	0.299													53	54					0	0	0.003610	0	0
ARMC4	55130	broad.mit.edu	37	10	28224136	28224136	+	Silent	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:28224136T>G	uc009xky.2	-	16	2396	c.2298A>C	c.(2296-2298)ACA>ACC	p.T766T	ARMC4_uc010qds.1_Silent_p.T291T|ARMC4_uc010qdt.1_Silent_p.T458T|ARMC4_uc001itz.2_Silent_p.T766T	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	766	ARM 5.						binding			ovary(4)|skin(2)	6						CAGGCTGATCTGTTAGAAGTC	0.428													16	65					0	0	0.004007	0	0
ARMC4	55130	broad.mit.edu	37	10	28228904	28228904	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:28228904C>T	uc009xky.2	-	14	2117	c.2019G>A	c.(2017-2019)AGG>AGA	p.R673R	ARMC4_uc010qds.1_Silent_p.R198R|ARMC4_uc010qdt.1_Silent_p.R365R|ARMC4_uc001itz.2_Silent_p.R673R	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	673	ARM 4.|HEAT.						binding			ovary(4)|skin(2)	6						TTTCAATGATCCTTTCTGCTT	0.413													21	23					0	0	0.004656	0	0
ARMC4	55130	broad.mit.edu	37	10	28233806	28233806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:28233806C>T	uc009xky.2	-	11	1570	c.1472G>A	c.(1471-1473)AGA>AAA	p.R491K	ARMC4_uc010qds.1_Missense_Mutation_p.R16K|ARMC4_uc010qdt.1_Missense_Mutation_p.R183K|ARMC4_uc001itz.2_Missense_Mutation_p.R491K|ARMC4_uc010qdu.1_Missense_Mutation_p.R183K	NM_018076	NP_060546	Q5T2S8	ARMC4_HUMAN	armadillo repeat containing 4	491	ARM 1.						binding			ovary(4)|skin(2)	6						TCCAACATCTCTGATGGCCAA	0.458													8	56					0	0	0.003080	0	0
ZNF438	220929	broad.mit.edu	37	10	31138274	31138274	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:31138274G>A	uc010qdz.1	-	7	1495	c.1060C>T	c.(1060-1062)CAG>TAG	p.Q354*	ZNF438_uc001ivn.2_Nonsense_Mutation_p.Q305*|ZNF438_uc010qdy.1_Nonsense_Mutation_p.Q344*|ZNF438_uc001ivo.3_5'UTR|ZNF438_uc009xlg.2_Nonsense_Mutation_p.Q354*|ZNF438_uc001ivp.3_Nonsense_Mutation_p.Q344*|ZNF438_uc010qea.1_Nonsense_Mutation_p.Q354*|ZNF438_uc010qeb.1_Nonsense_Mutation_p.Q354*|ZNF438_uc010qec.1_5'UTR	NM_182755	NP_877432	Q7Z4V0	ZN438_HUMAN	zinc finger protein 438 isoform a	354					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)	2		Prostate(175;0.0587)				CAGGCACTCTGCTGTGACACT	0.483													38	27					0	0	0.005524	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37442523	37442523	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:37442523G>A	uc001iza.1	+	13	1662	c.1563G>A	c.(1561-1563)CAG>CAA	p.Q521Q		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	577						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CTGTTTCACAGAAGGATGTGT	0.279													37	207					0	0	0.003610	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37478418	37478418	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:37478418G>A	uc001iza.1	+	25	2376	c.2277G>A	c.(2275-2277)CAG>CAA	p.Q759Q		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	815						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						CTGTTTCACAGAAGGATGTGT	0.279													19	15					0	0	0.006320	0	0
ZNF33A	7581	broad.mit.edu	37	10	38306296	38306296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:38306296C>T	uc001izh.2	+	4	410	c.232C>T	c.(232-234)CCA>TCA	p.P78S	ZNF33A_uc001izg.2_Missense_Mutation_p.P78S|ZNF33A_uc010qev.1_Missense_Mutation_p.P85S|ZNF33A_uc001izi.1_Missense_Mutation_p.P78S|ZNF33A_uc001izj.2_RNA	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	78	KRAB.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GGAAGAATTCCCAAGCCAAAG	0.428													30	86					0	0	0.002836	0	0
ZNF33A	7581	broad.mit.edu	37	10	38343834	38343834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:38343834C>T	uc001izh.2	+	5	957	c.779C>T	c.(778-780)TCC>TTC	p.S260F	ZNF33A_uc001izg.2_Missense_Mutation_p.S261F|ZNF33A_uc010qev.1_Missense_Mutation_p.S267F|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	260						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						GATAGTTCATCCCTCTTGTTC	0.383													24	18					0	0	0.003330	0	0
ZNF33A	7581	broad.mit.edu	37	10	38344403	38344403	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:38344403C>T	uc001izh.2	+	5	1526	c.1348C>T	c.(1348-1350)CGT>TGT	p.R450C	ZNF33A_uc001izg.2_Missense_Mutation_p.R451C|ZNF33A_uc010qev.1_Missense_Mutation_p.R457C|ZNF33A_uc001izi.1_Intron	NM_006974	NP_008905	Q06730	ZN33A_HUMAN	zinc finger protein 33A isoform b	450	C2H2-type 5.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(1)	3						AAAATCCTTCCGTGTGACTTC	0.413													17	30					0	0	0.001523	0	0
ZNF37A	7587	broad.mit.edu	37	10	38406388	38406388	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:38406388C>T	uc001izk.2	+	8	1128	c.309C>T	c.(307-309)TTC>TTT	p.F103F	ZNF37A_uc001izl.2_Silent_p.F103F|ZNF37A_uc001izm.2_Silent_p.F103F	NM_001007094	NP_001007095	P17032	ZN37A_HUMAN	zinc finger protein 37a	103						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			breast(1)	1						GAAAATGTTTCTGTGATGAAA	0.318													68	91					0	0	0.003610	0	0
ZNF37B	100129482	broad.mit.edu	37	10	43016349	43016349	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:43016349G>A	uc001jab.3	-	5		c.2851C>T			ZNF37B_uc001jac.3_RNA|ZNF37B_uc001jaa.3_RNA					Homo sapiens cDNA: FLJ23327 fis, clone HEP12630, highly similar to HSZNF37 Homo sapiens ZNF37A mRNA for zinc finger protein.												0						GAATTCTCAGGGAAAGCTTTC	0.373													16	20					0	0	0.004990	0	0
ALOX5	240	broad.mit.edu	37	10	45878075	45878075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:45878075C>T	uc001jce.2	+	2	394	c.295C>T	c.(295-297)CCC>TCC	p.P99S	ALOX5_uc009xmt.2_Missense_Mutation_p.P99S|ALOX5_uc010qfg.1_Missense_Mutation_p.P99S	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	99	PLAT.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CATCGAGTTCCCCTGCTACCG	0.602													4	9					0	0	0.000248	0	0
ALOX5	240	broad.mit.edu	37	10	45938946	45938946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:45938946G>A	uc001jce.2	+	11	1633	c.1534G>A	c.(1534-1536)GAT>AAT	p.D512N	ALOX5_uc009xmt.2_Missense_Mutation_p.D480N|ALOX5_uc010qfg.1_Missense_Mutation_p.D512N	NM_000698	NP_000689	P09917	LOX5_HUMAN	arachidonate 5-lipoxygenase	512	Lipoxygenase.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process	cytosol|nuclear envelope lumen|nuclear matrix|nuclear membrane	arachidonate 5-lipoxygenase activity|iron ion binding|lipoxygenase activity|protein binding			ovary(1)|pancreas(1)	2		Lung SC(717;0.0257)			Diethylcarbamazine(DB00711)|Hydrocortisone(DB00741)|Leflunomide(DB01097)|Masoprocol(DB00179)|Meclofenamic acid(DB00939)|Minocycline(DB01017)|Montelukast(DB00471)|Quinacrine(DB01103)|Vitamin E(DB00163)|Zileuton(DB00744)	CTTCGTGAACGATGTCTACGT	0.687													6	15					0	0	0.004482	0	0
GPRIN2	9721	broad.mit.edu	37	10	46999641	46999641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:46999641G>A	uc001jec.2	+	3	896	c.761G>A	c.(760-762)GGG>GAG	p.G254E	GPRIN2_uc010qfq.1_Missense_Mutation_p.G17E	NM_014696	NP_055511	O60269	GRIN2_HUMAN	G protein-regulated inducer of neurite outgrowth	254											0						CCTGCCACAGGGATCCTGGCC	0.627													4	37					0	0	0.000602	0	0
RBP3	5949	broad.mit.edu	37	10	48382025	48382025	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:48382025C>T	uc001jez.2	-	4	3738	c.3624G>A	c.(3622-3624)GGG>GGA	p.G1208G		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	1208	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	TCACCCCCACCCCTTCCCAGG	0.642													6	7					0	0	0.003080	0	0
GDF2	2658	broad.mit.edu	37	10	48416399	48416399	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:48416399C>T	uc001jfa.1	-	1	458	c.295G>A	c.(295-297)GAT>AAT	p.D99N		NM_016204	NP_057288	Q9UK05	GDF2_HUMAN	growth differentiation factor 2 precursor	99					activin receptor signaling pathway|BMP signaling pathway|cartilage development|cellular iron ion homeostasis|growth|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of DNA replication|negative regulation of endothelial cell proliferation|ossification|pathway-restricted SMAD protein phosphorylation|patterning of blood vessels|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent	extracellular space	cytokine activity|growth factor activity			ovary(2)|skin(1)	3						GTCGACTTATCGGACGTGTAC	0.587													10	36					0	0	0.000978	0	0
FRMPD2	143162	broad.mit.edu	37	10	49376703	49376703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:49376703C>T	uc001jgi.2	-	27	3579	c.3472G>A	c.(3472-3474)GAA>AAA	p.E1158K	FRMPD2_uc001jgh.2_Missense_Mutation_p.E1126K|FRMPD2_uc001jgj.2_Missense_Mutation_p.E1136K|FRMPD2L1_uc001jgf.2_Missense_Mutation_p.E169K|FRMPD2_uc001jgg.2_Missense_Mutation_p.E110K|FRMPD2_uc001jgk.2_Missense_Mutation_p.E110K	NM_001018071	NP_001018081	Q68DX3	FRPD2_HUMAN	FERM and PDZ domain containing 2 isoform 3	1158	PDZ 3.				tight junction assembly	basolateral plasma membrane|cytoplasm|cytoskeleton|tight junction	1-phosphatidylinositol binding|protein binding			large_intestine(1)	1				Kidney(211;0.201)		AGCGTGACTTCCTGTGGGGCC	0.567													28	1					0	0	0.001786	0	0
ARHGAP22	58504	broad.mit.edu	37	10	49791076	49791076	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:49791076C>T	uc001jgt.2	-	2	453	c.156G>A	c.(154-156)AAG>AAA	p.K52K	ARHGAP22_uc001jgu.2_Silent_p.K52K|ARHGAP22_uc010qgl.1_Silent_p.K52K|ARHGAP22_uc010qgm.1_Silent_p.K58K|ARHGAP22_uc001jgv.2_5'UTR	NM_021226	NP_067049	Q7Z5H3	RHG22_HUMAN	Rho GTPase activating protein 2	52	PH.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|transcription, DNA-dependent	cytosol|nucleus	GTPase activator activity			ovary(1)	1						GCTGCCAGTTCTTCATGATGC	0.607													43	57					0	0	0.003214	0	0
ERCC6	2074	broad.mit.edu	37	10	50682166	50682166	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:50682166C>T	uc001jhs.3	-	13	2659	c.2505G>A	c.(2503-2505)TGG>TGA	p.W835*	ERCC6_uc009xod.2_5'UTR|ERCC6_uc010qgr.1_Nonsense_Mutation_p.W205*|ERCC6_uc001jhr.3_Nonsense_Mutation_p.W203*	NM_000124	NP_000115	Q03468	ERCC6_HUMAN	excision repair cross-complementing rodent	835					base-excision repair|positive regulation of transcription elongation, DNA-dependent|transcription from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair	nucleolus|soluble fraction|transcription elongation factor complex	ATP binding|chromatin binding|DNA binding|DNA-dependent ATPase activity|helicase activity|protein C-terminus binding|protein complex binding|protein N-terminus binding			lung(5)|breast(5)|ovary(3)|large_intestine(2)|skin(1)	16						CAGAACGTTTCCAGTACCCAA	0.423								Direct_reversal_of_damage|NER					23	52					0	0	0.001882	0	0
A1CF	29974	broad.mit.edu	37	10	52587988	52587988	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:52587988T>A	uc001jjj.2	-	7	860	c.672A>T	c.(670-672)GAA>GAT	p.E224D	A1CF_uc010qhn.1_Missense_Mutation_p.E232D|A1CF_uc001jji.2_Missense_Mutation_p.E224D|A1CF_uc001jjh.2_Missense_Mutation_p.E232D|A1CF_uc010qho.1_Missense_Mutation_p.E232D|A1CF_uc009xov.2_Missense_Mutation_p.E224D	NM_138932	NP_620310	Q9NQ94	A1CF_HUMAN	apobec-1 complementation factor isoform 2	224					cytidine to uridine editing|mRNA modification|mRNA processing|protein stabilization	apolipoprotein B mRNA editing enzyme complex|endoplasmic reticulum|nucleoplasm	nucleotide binding|protein binding|single-stranded RNA binding			central_nervous_system(1)	1						ACATTGTATCTTCATCAACTT	0.353													34	50					0	0	0.002445	0	0
PCDH15	65217	broad.mit.edu	37	10	55591205	55591205	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:55591205C>G	uc001jju.1	-	30	4467	c.4072G>C	c.(4072-4074)GAG>CAG	p.E1358Q	PCDH15_uc010qhq.1_Missense_Mutation_p.E1363Q|PCDH15_uc010qhr.1_Missense_Mutation_p.E1358Q|PCDH15_uc010qhs.1_Missense_Mutation_p.E1370Q|PCDH15_uc010qht.1_Missense_Mutation_p.E1365Q|PCDH15_uc010qhu.1_Missense_Mutation_p.E1358Q|PCDH15_uc001jjv.1_Intron|PCDH15_uc010qhv.1_Missense_Mutation_p.E1358Q|PCDH15_uc010qhw.1_Missense_Mutation_p.E1321Q|PCDH15_uc010qhx.1_Missense_Mutation_p.E1287Q|PCDH15_uc010qhy.1_Missense_Mutation_p.E1363Q|PCDH15_uc010qhz.1_Missense_Mutation_p.E1358Q|PCDH15_uc010qia.1_Missense_Mutation_p.E1336Q|PCDH15_uc010qib.1_Missense_Mutation_p.E1336Q	NM_033056	NP_149045	Q96QU1	PCD15_HUMAN	protocadherin 15 isoform CD1-4 precursor	1358	Extracellular (Potential).				equilibrioception|homophilic cell adhesion|photoreceptor cell maintenance|sensory perception of sound	extracellular region|extracellular space|integral to membrane|photoreceptor outer segment|plasma membrane|stereocilium|synapse	calcium ion binding			pancreas(5)|ovary(4)|upper_aerodigestive_tract(2)|skin(2)	13		Melanoma(3;0.117)|Lung SC(717;0.238)				GTCACTGCCTCTGGAGTCCGG	0.458										HNSCC(58;0.16)			28	28					0	0	0.006320	0	0
ANK3	288	broad.mit.edu	37	10	61828521	61828521	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:61828521C>T	uc001jky.2	-	37	12310	c.12118G>A	c.(12118-12120)GAG>AAG	p.E4040K	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4040					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CGGGAAGTCTCGGACAACGAC	0.488													26	76					0	0	0.005443	0	0
CTNNA3	29119	broad.mit.edu	37	10	67680180	67680180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:67680180C>T	uc009xpn.1	-	18	2719	c.2596G>A	c.(2596-2598)GAA>AAA	p.E866K	CTNNA3_uc001jmw.2_Missense_Mutation_p.E866K	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	866					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GCACACGTTTCCTCTGGCTTC	0.468													37	46					0	0	0.004878	0	0
CTNNA3	29119	broad.mit.edu	37	10	67726392	67726392	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:67726392C>T	uc009xpn.1	-	17	2501	c.2378G>A	c.(2377-2379)GGA>GAA	p.G793E	CTNNA3_uc001jmw.2_Missense_Mutation_p.G793E	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	793					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						GAGCTCTCCTCCCAGGTTCTG	0.448													12	49					0	0	0.003163	0	0
CTNNA3	29119	broad.mit.edu	37	10	67829151	67829151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:67829151C>T	uc009xpn.1	-	15	2197	c.2074G>A	c.(2074-2076)GAG>AAG	p.E692K	CTNNA3_uc001jmw.2_Missense_Mutation_p.E692K	NM_001127384	NP_001120856	Q9UI47	CTNA3_HUMAN	catenin, alpha 3	692					cell-cell adhesion	actin cytoskeleton|cytoplasm|fascia adherens	cadherin binding|structural molecule activity			skin(3)|ovary(2)|pancreas(1)|lung(1)|central_nervous_system(1)	8						TCCCATATCTCAATCTCAGCA	0.398													34	89					0	0	0.005524	0	0
TET1	80312	broad.mit.edu	37	10	70451120	70451120	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:70451120T>C	uc001jok.3	+	12	6465	c.5960T>C	c.(5959-5961)TTG>TCG	p.L1987S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	1987					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GAGGAGAAATTGCCCCACATT	0.498													43	47					0	0	0.003610	0	0
UNC5B	219699	broad.mit.edu	37	10	73051457	73051457	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:73051457C>T	uc001jro.2	+	10	2008	c.1563C>T	c.(1561-1563)TTC>TTT	p.F521F	UNC5B_uc001jrp.2_Silent_p.F510F	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	521	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						ACACCCACTTCCTGCACCTGC	0.697													5	15					0	0	0.001168	0	0
UNC5B	219699	broad.mit.edu	37	10	73056460	73056460	+	Silent	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:73056460G>C	uc001jro.2	+	15	2896	c.2451G>C	c.(2449-2451)GGG>GGC	p.G817G	UNC5B_uc001jrp.2_Silent_p.G806G	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	817	Cytoplasmic (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						AAGTGGAAGGGGAGGGCCAGA	0.612													12	33					0	0	0.001855	0	0
CBARA1	10367	broad.mit.edu	37	10	74267951	74267951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:74267951G>A	uc001jtb.1	-	7	753	c.620C>T	c.(619-621)TCC>TTC	p.S207F	CBARA1_uc010qjw.1_5'UTR|CBARA1_uc010qjx.1_Intron|CBARA1_uc009xqo.1_RNA	NM_006077	NP_006068	Q9BPX6	MICU1_HUMAN	calcium binding atopy-related autoantigen 1	205					calcium ion import|defense response|elevation of mitochondrial calcium ion concentration	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			ovary(1)	1						GTCTGAAAAGGATATGAGCCC	0.363													4	7					0	0	0.000248	0	0
CBARA1	10367	broad.mit.edu	37	10	74326472	74326472	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:74326472A>C	uc001jtb.1	-	2	213	c.80T>G	c.(79-81)ATC>AGC	p.I27S		NM_006077	NP_006068	Q9BPX6	MICU1_HUMAN	calcium binding atopy-related autoantigen 1	27					calcium ion import|defense response|elevation of mitochondrial calcium ion concentration	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			ovary(1)	1						CCGGATCTGGATGGGCTGTGA	0.483													6	7					0	0	0.001984	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407957	75407957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:75407957C>T	uc001jut.3	-	4	1605	c.1453G>A	c.(1453-1455)GTT>ATT	p.V485I	SYNPO2L_uc001jus.3_Missense_Mutation_p.V261I	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	485	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					CGGAAAATAACCGAGGTGGTA	0.657													5	9					0	0	0.001168	0	0
CHCHD1	118487	broad.mit.edu	37	10	75541845	75541845	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:75541845C>T	uc001jvc.3	+	1	38	c.12C>T	c.(10-12)CCC>CCT	p.P4P	CHCHD1_uc001jvb.2_Silent_p.P4P	NM_203298	NP_976043	Q96BP2	CHCH1_HUMAN	coiled-coil-helix-coiled-coil-helix domain	4						nucleus					0	Prostate(51;0.0112)					TGGCGACACCCAGCCTGCGGG	0.677													11	27					0	0	0.001368	0	0
EIF5AL1	143244	broad.mit.edu	37	10	81272769	81272769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:81272769G>A	uc009xrx.2	+	1	413	c.364G>A	c.(364-366)GAG>AAG	p.E122K	uc010qls.1_5'Flank	NM_001099692	NP_001093162	Q6IS14	IF5AL_HUMAN	eukaryotic translation initiation factor 5A-like	122					mRNA transport|peptidyl-lysine modification to hypusine|positive regulation of translational elongation|positive regulation of translational termination|protein transport|translational frameshifting|transmembrane transport	endoplasmic reticulum membrane|nuclear pore	ribosome binding|translation elongation factor activity				0	all_cancers(46;0.197)|Breast(12;0.000326)|Prostate(51;0.00985)|all_epithelial(25;0.0149)		Epithelial(14;0.00957)|all cancers(16;0.0179)|Colorectal(32;0.229)			CCTTGGCAAGGAGATTGAGCA	0.547													16	64					0	0	0.004007	0	0
NRG3	10718	broad.mit.edu	37	10	84118593	84118593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:84118593G>A	uc001kco.2	+	2	949	c.922G>A	c.(922-924)GAA>AAA	p.E308K	NRG3_uc010qlz.1_Missense_Mutation_p.E308K|NRG3_uc001kcp.2_Missense_Mutation_p.E87K|NRG3_uc001kcq.2_5'UTR	NM_001010848	NP_001010848	P56975	NRG3_HUMAN	neuregulin 3 isoform 1	308	EGF-like.|Extracellular (Potential).				regulation of cell growth	extracellular region|integral to plasma membrane	growth factor activity|receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			lung(5)|breast(1)	6				GBM - Glioblastoma multiforme(1;2.5e-18)|all cancers(1;2.85e-09)		CTTTGTGATCGAAACCCTGAC	0.557													19	20					0	0	0.008871	0	0
GRID1	2894	broad.mit.edu	37	10	87379753	87379753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:87379753G>A	uc001kdl.1	-	14	2332	c.2231C>T	c.(2230-2232)GCC>GTC	p.A744V	GRID1_uc009xsu.1_Intron|GRID1_uc010qmf.1_Missense_Mutation_p.A315V	NM_017551	NP_060021	Q9ULK0	GRID1_HUMAN	glutamate receptor, ionotropic, delta 1	744	Extracellular (Potential).					cell junction|integral to membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(5)|upper_aerodigestive_tract(2)|large_intestine(2)|central_nervous_system(1)	10					L-Glutamic Acid(DB00142)	TTCCACCACGGCCACATCCCA	0.552										Multiple Myeloma(13;0.14)			17	15					0	0	0.006122	0	0
PAPSS2	9060	broad.mit.edu	37	10	89472915	89472915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:89472915G>A	uc001kex.2	+	3	492	c.229G>A	c.(229-231)GAT>AAT	p.D77N	PAPSS2_uc001kew.2_Missense_Mutation_p.D77N|PAPSS2_uc009xtg.1_RNA	NM_004670	NP_004661	O95340	PAPS2_HUMAN	3'-phosphoadenosine 5'-phosphosulfate synthase 2	77	Adenylyl-sulfate kinase.				3'-phosphoadenosine 5'-phosphosulfate biosynthetic process|skeletal system development|sulfate assimilation|xenobiotic metabolic process	cytosol	adenylylsulfate kinase activity|ATP binding|protein binding|sulfate adenylyltransferase (ATP) activity			central_nervous_system(1)|skin(1)	2		Melanoma(5;0.019)|Colorectal(252;0.123)		UCEC - Uterine corpus endometrioid carcinoma (6;0.00164)|Colorectal(12;0.000323)|COAD - Colon adenocarcinoma(12;0.00124)		TTACTCCCTGGATGGGGACAA	0.498													48	43					0	0	0.003610	0	0
BTAF1	9044	broad.mit.edu	37	10	93773519	93773519	+	Silent	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:93773519A>C	uc001khr.2	+	31	4505	c.4407A>C	c.(4405-4407)ATA>ATC	p.I1469I		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1469					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				GTAAACCTATATTAGCAAGTA	0.388													20	27					0	0	0.007413	0	0
BTAF1	9044	broad.mit.edu	37	10	93784552	93784552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:93784552G>A	uc001khr.2	+	35	5001	c.4903G>A	c.(4903-4905)GAG>AAG	p.E1635K		NM_003972	NP_003963	O14981	BTAF1_HUMAN	BTAF1 RNA polymerase II, B-TFIID transcription	1635					negative regulation of transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0846)				CAGCACTTCCGAGAGTGGCAC	0.418													30	27					0	0	0.002445	0	0
PDE6C	5146	broad.mit.edu	37	10	95400236	95400236	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:95400236G>A	uc001kiu.3	+	13	1797	c.1659G>A	c.(1657-1659)AGG>AGA	p.R553R		NM_006204	NP_006195	P51160	PDE6C_HUMAN	phosphodiesterase 6C	553					visual perception	plasma membrane	3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|metal ion binding			ovary(2)|kidney(1)|skin(1)	4		Colorectal(252;0.123)				ACACTGTGAGGAAAGGGTACC	0.443													17	74					0	0	0.007413	0	0
PLCE1	51196	broad.mit.edu	37	10	95791619	95791619	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:95791619G>A	uc001kjk.2	+	2	1450	c.816G>A	c.(814-816)AAG>AAA	p.K272K	PLCE1_uc010qnx.1_Silent_p.K272K	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	272					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				CTTGTGAGAAGGTTGACATGG	0.388													23	64					0	0	0.002299	0	0
PLCE1	51196	broad.mit.edu	37	10	95791693	95791693	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:95791693T>A	uc001kjk.2	+	2	1524	c.890T>A	c.(889-891)TTG>TAG	p.L297*	PLCE1_uc010qnx.1_Nonsense_Mutation_p.L297*	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	297					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AAGACCTTTTTGAGCCATTTT	0.398													51	58					0	0	0.003610	0	0
CYP2C18	1562	broad.mit.edu	37	10	96466663	96466663	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:96466663G>A	uc001kjv.3	+	5	1091	c.765G>A	c.(763-765)CTG>CTA	p.L255L	CYP2C18_uc001kjw.3_Intron|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	255					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		AAGAATCCCTGGACATGAACA	0.338													7	43					0	0	0.006214	0	0
CYP2C18	1562	broad.mit.edu	37	10	96480249	96480249	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:96480249C>T	uc001kjv.3	+	6	1242	c.916C>T	c.(916-918)CTG>TTG	p.L306L	CYP2C18_uc001kjw.3_Silent_p.L247L|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	306					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		GAGCACCACTCTGAGATATGG	0.448													19	36					0	0	0.001882	0	0
CYP2C8	1558	broad.mit.edu	37	10	96826965	96826965	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:96826965C>T	uc001kkb.2	-	3	576	c.481G>A	c.(481-483)GCT>ACT	p.A161T	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.A91T|CYP2C8_uc010qob.1_Missense_Mutation_p.A75T|CYP2C8_uc010qoc.1_Missense_Mutation_p.A59T|CYP2C8_uc010qod.1_Missense_Mutation_p.A75T	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	161					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	AGTCACCCACCCTTGGTTTTT	0.507													29	77					0	0	0.002445	0	0
ALDH18A1	5832	broad.mit.edu	37	10	97371115	97371115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:97371115C>T	uc001kkz.2	-	16	2250	c.2008G>A	c.(2008-2010)GAC>AAC	p.D670N	ALDH18A1_uc001kky.2_Missense_Mutation_p.D668N|ALDH18A1_uc010qog.1_Missense_Mutation_p.D559N|ALDH18A1_uc010qoh.1_Missense_Mutation_p.D458N	NM_002860	NP_002851	P54886	P5CS_HUMAN	pyrroline-5-carboxylate synthetase isoform 1	670	Gamma-glutamyl phosphate reductase.				proline biosynthetic process	mitochondrial inner membrane	ATP binding|glutamate 5-kinase activity|glutamate-5-semialdehyde dehydrogenase activity			pancreas(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.0402)		Epithelial(162;9.1e-07)|all cancers(201;2.55e-05)	L-Glutamic Acid(DB00142)	AATTCCAGGTCCCCATACTCA	0.498													9	172					0	0	0.008291	0	0
PIK3AP1	118788	broad.mit.edu	37	10	98355379	98355379	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:98355379C>T	uc001kmq.2	-	17	2501	c.2373G>A	c.(2371-2373)AGG>AGA	p.R791R	PIK3AP1_uc001kmo.2_Silent_p.R390R|PIK3AP1_uc001kmp.2_Silent_p.R613R	NM_152309	NP_689522	Q6ZUJ8	BCAP_HUMAN	phosphoinositide-3-kinase adaptor protein 1	791	Pro-rich.					cytoplasm|plasma membrane				upper_aerodigestive_tract(3)|ovary(1)|skin(1)	5		Colorectal(252;0.0442)		Epithelial(162;6.29e-08)|all cancers(201;3.18e-06)		GGAAGGTCTCCCTGGTCGGAG	0.433													36	44					0	0	0.004878	0	0
ARHGAP19	84986	broad.mit.edu	37	10	99025843	99025843	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:99025843G>A	uc001knb.2	-	2	125	c.96C>T	c.(94-96)TCC>TCT	p.S32S	ARHGAP19_uc001kmy.2_RNA|ARHGAP19_uc001kna.2_Silent_p.S23S|ARHGAP19_uc009xvi.2_RNA|ARHGAP19_uc009xvj.2_Silent_p.S32S|ARHGAP19_uc009xvk.2_Intron	NM_032900	NP_116289	Q14CB8	RHG19_HUMAN	Rho GTPase activating protein 19	32					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|nucleus	GTPase activator activity				0		Colorectal(252;0.0854)		Epithelial(162;7.65e-09)|all cancers(201;4.49e-07)		GACCTCGAAGGGAAGAATCAT	0.393													9	46					0	0	0.004482	0	0
DNMBP	23268	broad.mit.edu	37	10	101715238	101715238	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:101715238G>A	uc001kqj.2	-	4	2085	c.1993C>T	c.(1993-1995)CGA>TGA	p.R665*	NCRNA00093_uc001kqk.1_Intron	NM_015221	NP_056036	Q6XZF7	DNMBP_HUMAN	dynamin binding protein	665					intracellular signal transduction|regulation of Rho protein signal transduction	cell junction|cytoskeleton|Golgi stack|synapse	protein binding|Rho guanyl-nucleotide exchange factor activity			ovary(5)|skin(1)	6		Colorectal(252;0.234)		Epithelial(162;2.94e-10)|all cancers(201;3.15e-08)		GGACGGTGTCGAGATAGGAGC	0.592													6	12					0	0	0.001168	0	0
PKD2L1	9033	broad.mit.edu	37	10	102048186	102048186	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:102048186G>A	uc001kqx.1	-	16	2768	c.2385C>T	c.(2383-2385)TCC>TCT	p.S795S	BLOC1S2_uc001kqv.1_5'Flank|BLOC1S2_uc001kqw.1_5'Flank|PKD2L1_uc009xwm.1_Silent_p.S748S	NM_016112	NP_057196	Q9P0L9	PK2L1_HUMAN	polycystic kidney disease 2-like 1	795	Cytoplasmic (Potential).				signal transduction	integral to membrane	calcium activated cation channel activity|calcium ion binding|cytoskeletal protein binding			ovary(4)	4		Colorectal(252;0.117)		Epithelial(162;6.15e-10)|all cancers(201;5.14e-08)		TCTCACCACGGGAGAGTCTCC	0.517													48	58					0	0	0.003610	0	0
SEC31B	25956	broad.mit.edu	37	10	102255225	102255225	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:102255225G>A	uc001krc.1	-	19	2491	c.2389C>T	c.(2389-2391)CCC>TCC	p.P797S	SEC31B_uc010qpo.1_Missense_Mutation_p.P796S|SEC31B_uc001krd.1_Missense_Mutation_p.P334S|SEC31B_uc001krf.1_Missense_Mutation_p.P334S|SEC31B_uc001kre.1_Missense_Mutation_p.P334S|SEC31B_uc001krg.1_Missense_Mutation_p.P366S	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	797					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane		p.P797R(1)		ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		CGGGGGAAGGGGAAAGGGGGA	0.493													16	19					0	0	0.006122	0	0
HPS6	79803	broad.mit.edu	37	10	103827536	103827536	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:103827536C>T	uc001kuj.2	+	1	2390	c.2305C>T	c.(2305-2307)CCG>TCG	p.P769S		NM_024747	NP_079023	Q86YV9	HPS6_HUMAN	Hermansky-Pudlak syndrome-6	769						cytosol|early endosome membrane|endoplasmic reticulum|microsome					0		Colorectal(252;0.122)		Epithelial(162;5.93e-08)|all cancers(201;1.03e-06)		CACTCCACCCCCGACTCCACC	0.597									Hermansky-Pudlak_syndrome				18	20					0	0	0.001523	0	0
PPRC1	23082	broad.mit.edu	37	10	103899829	103899829	+	Silent	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:103899829C>A	uc001kum.2	+	5	1603	c.1564C>A	c.(1564-1566)CGG>AGG	p.R522R	PPRC1_uc001kun.2_Silent_p.R402R|PPRC1_uc010qqj.1_Silent_p.R522R|PPRC1_uc009xxa.2_RNA	NM_015062	NP_055877	Q5VV67	PPRC1_HUMAN	peroxisome proliferator-activated receptor	522					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Colorectal(252;0.122)		Epithelial(162;4.97e-08)|all cancers(201;8.99e-07)		GGGGAAGCCCCGGGCTTGGGC	0.537													34	43					5.73237e-09	8.07067e-09	0.006230	1	0
ARL3	403	broad.mit.edu	37	10	104459154	104459154	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:104459154A>T	uc001kwa.2	-	3	398	c.240T>A	c.(238-240)AAT>AAA	p.N80K		NM_004311	NP_004302	P36405	ARL3_HUMAN	ADP-ribosylation factor-like 3	80					cell cycle|cytokinesis|small GTPase mediated signal transduction	centrosome|cytoplasmic microtubule|Golgi membrane|midbody|nucleus|photoreceptor connecting cilium|spindle microtubule	GDP binding|GTP binding|metal ion binding|microtubule binding				0		Colorectal(252;0.122)		Epithelial(162;4.88e-09)|all cancers(201;1.29e-07)|BRCA - Breast invasive adenocarcinoma(275;0.22)		TTTCAAAATAATTCTTCCAGT	0.353													9	16					0	0	0.006214	0	0
COL17A1	1308	broad.mit.edu	37	10	105824312	105824312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:105824312G>A	uc001kxr.2	-	10	819	c.650C>T	c.(649-651)CCC>CTC	p.P217L	COL17A1_uc010qqv.1_Missense_Mutation_p.P201L|COL17A1_uc009xxp.1_Missense_Mutation_p.P217L	NM_000494	NP_000485	Q9UMD9	COHA1_HUMAN	alpha 1 type XVII collagen	217	Cytoplasmic (Potential).|Nonhelical region (NC16).|Necessary for interaction with DST and for the recruitment of DST to hemidesmosome.				cell-matrix adhesion|epidermis development|hemidesmosome assembly	basement membrane|cell-cell junction|collagen|hemidesmosome|integral to plasma membrane	protein binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.103)|Breast(234;0.122)		Epithelial(162;2.5e-09)|all cancers(201;7.94e-08)|BRCA - Breast invasive adenocarcinoma(275;0.0165)		CACATGGGAGGGAAGGTTGGC	0.572													7	6					0	0	0.001984	0	0
XPNPEP1	7511	broad.mit.edu	37	10	111642289	111642289	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:111642289G>A	uc001kyp.1	-	10	953	c.813C>T	c.(811-813)ATC>ATT	p.I271I	XPNPEP1_uc009xxt.1_Silent_p.I314I|XPNPEP1_uc001kyq.1_Silent_p.I200I|XPNPEP1_uc010qrb.1_Silent_p.I314I|XPNPEP1_uc010qra.1_Silent_p.I38I	NM_020383	NP_065116	Q9NQW7	XPP1_HUMAN	X-prolyl aminopeptidase (aminopeptidase P) 1,	271					bradykinin catabolic process|proteolysis		manganese ion binding|metalloaminopeptidase activity|protein homodimerization activity			ovary(3)|pancreas(1)	4		Breast(234;0.174)		Epithelial(162;1.64e-05)|all cancers(201;0.000564)|BRCA - Breast invasive adenocarcinoma(275;0.0721)		GCTCGCTCAGGATGGACTTGT	0.582													12	36					0	0	0.001368	0	0
TCF7L2	6934	broad.mit.edu	37	10	114905797	114905797	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:114905797G>A	uc001lae.3	+	8	1323	c.816G>A	c.(814-816)ACG>ACA	p.T272T	TCF7L2_uc001lac.3_Silent_p.T249T|TCF7L2_uc010qrk.1_Silent_p.T249T|TCF7L2_uc010qrl.1_Silent_p.T249T|TCF7L2_uc010qrm.1_Silent_p.T272T|TCF7L2_uc010qrn.1_Silent_p.T215T|TCF7L2_uc001lad.3_Silent_p.T245T|TCF7L2_uc001lag.3_Silent_p.T296T|TCF7L2_uc001laf.3_Silent_p.T249T|TCF7L2_uc010qro.1_Silent_p.T249T|TCF7L2_uc001lah.2_Silent_p.T249T|TCF7L2_uc010qrp.1_Silent_p.T249T|TCF7L2_uc010qrq.1_Silent_p.T245T|TCF7L2_uc010qrr.1_Silent_p.T187T|TCF7L2_uc010qrs.1_Silent_p.T143T|TCF7L2_uc010qrt.1_Silent_p.T143T|TCF7L2_uc010qru.1_Silent_p.T166T|TCF7L2_uc010qrv.1_Silent_p.T89T|TCF7L2_uc010qrw.1_5'UTR|TCF7L2_uc010qrx.1_Silent_p.T129T	NM_001146274	NP_001139746	Q9NQB0	TF7L2_HUMAN	transcription factor 7-like 2 isoform 1	272	Mediates interaction with MAD2L2.|Pro-rich.				anti-apoptosis|blood vessel development|canonical Wnt receptor signaling pathway involved in positive regulation of epithelial to mesenchymal transition|cell cycle arrest|cell proliferation|fat cell differentiation|glucose homeostasis|maintenance of DNA repeat elements|myoblast cell fate commitment|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|pancreas development|positive regulation of heparan sulfate proteoglycan biosynthetic process|positive regulation of insulin secretion|positive regulation of protein binding|positive regulation of protein export from nucleus|positive regulation of protein kinase B signaling cascade|positive regulation of transcription from RNA polymerase II promoter|regulation of hormone metabolic process|regulation of smooth muscle cell proliferation|response to glucose stimulus	beta-catenin-TCF7L2 complex|PML body|protein-DNA complex	armadillo repeat domain binding|beta-catenin binding|gamma-catenin binding|nuclear hormone receptor binding|protein kinase binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding			large_intestine(3)|ovary(1)	4		Breast(234;0.058)|Colorectal(252;0.0615)		Epithelial(162;0.00554)|all cancers(201;0.02)		ACCCAATCACGACAGGAGGAT	0.517													120	184					0	0	0.003610	0	0
ADRB1	153	broad.mit.edu	37	10	115804274	115804274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:115804274C>T	uc001lba.2	+	1	469	c.383C>T	c.(382-384)TCC>TTC	p.S128F		NM_000684	NP_000675	P08588	ADRB1_HUMAN	beta-1-adrenergic receptor	128	Extracellular (By similarity).				positive regulation of cAMP biosynthetic process	integral to plasma membrane	alpha-2A adrenergic receptor binding|beta1-adrenergic receptor activity|protein heterodimerization activity				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0124)|all cancers(201;0.0298)	Acebutolol(DB01193)|Alprenolol(DB00866)|Amiodarone(DB01118)|Arbutamine(DB01102)|Atenolol(DB00335)|Betaxolol(DB00195)|Bevantolol(DB01295)|Bisoprolol(DB00612)|Bretylium(DB01158)|Carteolol(DB00521)|Carvedilol(DB01136)|Desipramine(DB01151)|Dobutamine(DB00841)|Dopamine(DB00988)|Epinephrine(DB00668)|Esmolol(DB00187)|Isoetharine(DB00221)|Isoproterenol(DB01064)|Labetalol(DB00598)|Levobunolol(DB01210)|Metipranolol(DB01214)|Metoprolol(DB00264)|Nadolol(DB01203)|Norepinephrine(DB00368)|Oxprenolol(DB01580)|Penbutolol(DB01359)|Pindolol(DB00960)|Practolol(DB01297)|Propranolol(DB00571)|Risperidone(DB00734)|Timolol(DB00373)|Ziprasidone(DB00246)	GAGTACGGCTCCTTCTTCTGC	0.652													25	34					0	0	0.008361	0	0
GFRA1	2674	broad.mit.edu	37	10	117849277	117849277	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:117849277A>G	uc001lcj.2	-	9	1870	c.1172T>C	c.(1171-1173)GTT>GCT	p.V391A	GFRA1_uc001lci.2_Missense_Mutation_p.V386A|GFRA1_uc009xyr.2_Missense_Mutation_p.V386A	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	391					axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		CGGTGGCAAAACATGAGTGGG	0.562													35	46					0	0	0.004878	0	0
GFRA1	2674	broad.mit.edu	37	10	117856168	117856168	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:117856168A>T	uc001lcj.2	-	7	1576	c.878T>A	c.(877-879)ATT>AAT	p.I293N	GFRA1_uc001lci.2_Missense_Mutation_p.I288N|GFRA1_uc009xyr.2_Missense_Mutation_p.I288N	NM_005264	NP_005255	P56159	GFRA1_HUMAN	GDNF family receptor alpha 1 isoform a	293	3.				axon guidance	anchored to membrane|extrinsic to membrane|plasma membrane	glial cell-derived neurotrophic factor receptor activity			ovary(1)|pancreas(1)	2		Lung NSC(174;0.21)		all cancers(201;0.0337)		GATCTTACCAATAAGCCCCGA	0.493													6	22					0	0	0.001984	0	0
PNLIPRP2	5408	broad.mit.edu	37	10	118385531	118385532	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:118385531_118385532CC>TT	uc001lcq.2	+	6	305_306	c.282_283CC>TT	c.(280-285)ATCCAT>ATTTAT	p.H95Y	PNLIPRP2_uc009xyu.1_RNA|PNLIPRP2_uc009xyv.1_RNA	NM_005396	NP_005387	P54317	LIPR2_HUMAN	pancreatic lipase-related protein 2	94					galactolipid catabolic process|lipid digestion|phospholipid catabolic process|triglyceride metabolic process	extracellular space	acylglycerol lipase activity|calcium ion binding|galactolipase activity|phospholipase activity|triglyceride lipase activity			large_intestine(1)	1				all cancers(201;0.015)		GCTTCATCATCCATGGCTTCTT	0.505													5	17					0	0	0.004672	0	0
EMX2	2018	broad.mit.edu	37	10	119307636	119307636	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:119307636G>C	uc001ldh.3	+	3	1475	c.652G>C	c.(652-654)GGC>CGC	p.G218R	EMX2_uc001ldi.3_Missense_Mutation_p.R156T	NM_004098	NP_004089	Q04743	EMX2_HUMAN	empty spiracles homeobox 2 isoform 1	218						nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0		Colorectal(252;0.109)|Lung NSC(174;0.179)|all_lung(145;0.22)		all cancers(201;0.0133)		GGAGGAAGAAGGCTCAGATTC	0.493													3	14					0	0	0.004672	0	0
FGFR2	2263	broad.mit.edu	37	10	123279667	123279667	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:123279667C>T	uc010qtk.1	-	7	1412	c.765G>A	c.(763-765)CGG>CGA	p.R255R	FGFR2_uc010qtg.1_Intron|FGFR2_uc010qth.1_Silent_p.R140R|FGFR2_uc010qti.1_Silent_p.R166R|FGFR2_uc010qtj.1_Silent_p.R255R|FGFR2_uc010qtl.1_Silent_p.R255R|FGFR2_uc010qtm.1_Silent_p.R140R|FGFR2_uc001lfl.3_Silent_p.R255R|FGFR2_uc001lfm.2_Silent_p.R166R|FGFR2_uc001lfn.3_RNA|FGFR2_uc010qtn.1_Silent_p.R274R|FGFR2_uc010qto.1_Silent_p.R159R|FGFR2_uc001lfo.1_Silent_p.R274R|FGFR2_uc010qtp.1_Silent_p.R274R|FGFR2_uc001lfg.3_5'Flank	NM_000141	NP_000132	P21802	FGFR2_HUMAN	fibroblast growth factor receptor 2 isoform 1	255	Extracellular (Potential).				angiogenesis|axonogenesis|bone mineralization|bone morphogenesis|branch elongation involved in salivary gland morphogenesis|branching involved in embryonic placenta morphogenesis|branching morphogenesis of a nerve|bud elongation involved in lung branching|cell fate commitment|cell growth|cell-cell signaling|cellular response to protein stimulus|embryonic digestive tract morphogenesis|embryonic pattern specification|epithelial cell proliferation involved in salivary gland morphogenesis|fibroblast growth factor receptor signaling pathway involved in hemopoiesis|fibroblast growth factor receptor signaling pathway involved in mammary gland specification|fibroblast growth factor receptor signaling pathway involved in negative regulation of apoptosis in bone marrow|fibroblast growth factor receptor signaling pathway involved in orbitofrontal cortex development|fibroblast growth factor receptor signaling pathway involved in positive regulation of cell proliferation in bone marrow|hair follicle morphogenesis|insulin receptor signaling pathway|lacrimal gland development|lateral sprouting from an epithelium|limb bud formation|lung alveolus development|lung lobe morphogenesis|lung-associated mesenchyme development|mammary gland bud formation|membranous septum morphogenesis|mesenchymal cell differentiation involved in lung development|mesenchymal cell proliferation involved in lung development|midbrain development|multicellular organism growth|negative regulation of transcription from RNA polymerase II promoter|odontogenesis|organ growth|otic vesicle formation|outflow tract septum morphogenesis|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cardiac muscle cell proliferation|positive regulation of cell cycle|positive regulation of cell division|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of ERK1 and ERK2 cascade|positive regulation of mesenchymal cell proliferation|positive regulation of transcription from RNA polymerase II promoter|post-embryonic development|prostate epithelial cord arborization involved in prostate glandular acinus morphogenesis|prostate epithelial cord elongation|pyramidal neuron development|regulation of branching involved in prostate gland morphogenesis|regulation of cell fate commitment|regulation of fibroblast growth factor receptor signaling pathway|regulation of multicellular organism growth|regulation of smooth muscle cell differentiation|regulation of smoothened signaling pathway|squamous basal epithelial stem cell differentiation involved in prostate gland acinus development|ureteric bud development|ventricular cardiac muscle tissue morphogenesis|ventricular zone neuroblast division	cell cortex|cell surface|excitatory synapse|extracellular region|integral to membrane|nucleus|plasma membrane	ATP binding|fibroblast growth factor binding|fibroblast growth factor binding|fibroblast growth factor receptor activity|heparin binding|protein binding			endometrium(44)|skin(28)|lung(11)|ovary(4)|cervix(2)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|soft_tissue(1)|central_nervous_system(1)	96		Lung NSC(174;0.0841)|all_lung(145;0.106)|all_neural(114;0.107)	STAD - Stomach adenocarcinoma(1;7.52e-05)|all cancers(1;0.0722)	all cancers(201;9.73e-05)|GBM - Glioblastoma multiforme(135;0.0845)	Palifermin(DB00039)	GGAGGATGGGCCGGTGAGGCG	0.567		5	Mis		gastric. NSCLC|endometrial		Crouzon|Pfeiffer|and Apert syndromes		Apert_syndrome|Saethre-Chotzen_syndrome				9	13					0	0	0.004482	0	0
TACC2	10579	broad.mit.edu	37	10	123843060	123843060	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:123843060G>A	uc001lfv.2	+	4	1405	c.1045G>A	c.(1045-1047)GGC>AGC	p.G349S	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G349S|TACC2_uc010qtv.1_Missense_Mutation_p.G349S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	349						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCTGCCCTGGGGCTTGCCAAG	0.632													15	17					0	0	0.004990	0	0
TACC2	10579	broad.mit.edu	37	10	123845148	123845148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:123845148C>T	uc001lfv.2	+	4	3493	c.3133C>T	c.(3133-3135)CCT>TCT	p.P1045S	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P1045S|TACC2_uc010qtv.1_Missense_Mutation_p.P1045S	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1045						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GGAGGCCCCACCTTGTCAGCC	0.617													14	12					0	0	0.001855	0	0
TACC2	10579	broad.mit.edu	37	10	123845920	123845921	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:123845920_123845921GG>AA	uc001lfv.2	+	4	4265_4266	c.3905_3906GG>AA	c.(3904-3906)GGG>GAA	p.G1302E	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.G1302E|TACC2_uc010qtv.1_Missense_Mutation_p.G1302E	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	1302						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GCTGCAGGTGGGGAAATCCCTG	0.604													6	9					0	0	0.004672	0	0
TACC2	10579	broad.mit.edu	37	10	123970317	123970317	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:123970317G>A	uc001lfv.2	+	9	6737	c.6377G>A	c.(6376-6378)CGA>CAA	p.R2126Q	TACC2_uc001lfw.2_Missense_Mutation_p.R272Q|TACC2_uc009xzx.2_Missense_Mutation_p.R2081Q|TACC2_uc010qtv.1_Missense_Mutation_p.R2130Q|TACC2_uc001lfx.2_5'UTR|TACC2_uc001lfy.2_5'UTR|TACC2_uc001lfz.2_Missense_Mutation_p.R204Q|TACC2_uc001lga.2_Missense_Mutation_p.R204Q|TACC2_uc009xzy.2_Missense_Mutation_p.R204Q|TACC2_uc001lgb.2_Missense_Mutation_p.R161Q|TACC2_uc010qtw.1_Missense_Mutation_p.R221Q	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2126						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACCCTTAAGCGAACTAAAAAA	0.532													16	59					0	0	0.004990	0	0
TACC2	10579	broad.mit.edu	37	10	123996969	123996969	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:123996969C>T	uc001lfv.2	+	17	8547	c.8187C>T	c.(8185-8187)ATC>ATT	p.I2729I	TACC2_uc001lfw.2_Silent_p.I875I|TACC2_uc009xzx.2_Silent_p.I2607I|TACC2_uc010qtv.1_Silent_p.I2656I|TACC2_uc001lfx.2_Silent_p.I356I|TACC2_uc001lfy.2_Silent_p.I352I|TACC2_uc001lfz.2_Silent_p.I807I|TACC2_uc001lga.2_Silent_p.I777I|TACC2_uc009xzy.2_Silent_p.I789I|TACC2_uc001lgb.2_Silent_p.I687I	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2729						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				ACTCCCGCATCGGGACCGCTG	0.527													20	20					0	0	0.008871	0	0
DMBT1	1755	broad.mit.edu	37	10	124331842	124331842	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:124331842C>T	uc001lgk.1	+	5	306	c.200C>T	c.(199-201)TCC>TTC	p.S67F	DMBT1_uc001lgl.1_Missense_Mutation_p.S67F|DMBT1_uc001lgm.1_Missense_Mutation_p.S67F|DMBT1_uc009xzz.1_Missense_Mutation_p.S67F|DMBT1_uc010qtx.1_Missense_Mutation_p.S67F|DMBT1_uc009yaa.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	67					epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				TCTCCGATTTCCTTGGAGTCA	0.522													36	68					0	0	0.004878	0	0
C10orf88	80007	broad.mit.edu	37	10	124711492	124711492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:124711492G>A	uc001lgw.2	-	3	644	c.419C>T	c.(418-420)TCC>TTC	p.S140F	C10orf88_uc001lgx.2_Missense_Mutation_p.S42F	NM_024942	NP_079218	Q9H8K7	CJ088_HUMAN	hypothetical protein LOC80007	140											0		all_neural(114;0.0765)|Lung NSC(174;0.163)|all_lung(145;0.205)		Colorectal(40;0.0686)|COAD - Colon adenocarcinoma(40;0.0735)		AGCATGTGTGGAGGACTCCAA	0.249													10	19					0	0	0.000978	0	0
MKI67	4288	broad.mit.edu	37	10	129901361	129901361	+	Silent	SNP	G	A	A	rs149549696	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:129901361G>A	uc001lke.2	-	13	8938	c.8743C>T	c.(8743-8745)CTG>TTG	p.L2915L	MKI67_uc001lkf.2_Silent_p.L2555L|MKI67_uc009yav.1_Silent_p.L2490L|MKI67_uc009yaw.1_Silent_p.L2065L	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	2915	16 X 122 AA approximate repeats.|16.				cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				AGATCTTCCAGGGGTTGGGCC	0.522													59	72					0	0	0.003610	0	0
MKI67	4288	broad.mit.edu	37	10	129913558	129913558	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:129913558T>C	uc001lke.2	-	7	1309	c.1114A>G	c.(1114-1116)AGA>GGA	p.R372G	MKI67_uc001lkf.2_Intron|MKI67_uc009yav.1_Intron|MKI67_uc009yaw.1_Intron	NM_002417	NP_002408	P46013	KI67_HUMAN	antigen identified by monoclonal antibody Ki-67	372					cell proliferation	nucleolus	ATP binding|protein C-terminus binding			ovary(4)|central_nervous_system(2)|skin(1)	7		all_epithelial(44;2.12e-05)|all_lung(145;0.00679)|Lung NSC(174;0.00998)|all_neural(114;0.0936)|Colorectal(57;0.14)|Breast(234;0.166)|Melanoma(40;0.203)				ACAGATTCTCTTCTACCAGTA	0.398													48	51					0	0	0.003610	0	0
EBF3	253738	broad.mit.edu	37	10	131671774	131671774	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:131671774C>T	uc001lki.1	-	8	782	c.723G>A	c.(721-723)GGG>GGA	p.G241G		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	241					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GGGCCCGCCTCCCGTGTTTGG	0.507													20	31					0	0	0.002299	0	0
KNDC1	85442	broad.mit.edu	37	10	135011270	135011270	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:135011270C>A	uc001llz.1	+	12	1905	c.1904C>A	c.(1903-1905)CCA>CAA	p.P635Q	KNDC1_uc001lma.1_Missense_Mutation_p.P570Q|KNDC1_uc001lmb.1_Missense_Mutation_p.P47Q	NM_152643	NP_689856	Q76NI1	VKIND_HUMAN	kinase non-catalytic C-lobe domain (KIND)	635					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction					upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(35;4.16e-10)|all_epithelial(44;2.07e-08)|Lung NSC(174;0.000845)|all_lung(145;0.00145)|all_neural(114;0.0299)|Melanoma(40;0.123)|Colorectal(31;0.173)|Glioma(114;0.203)		OV - Ovarian serous cystadenocarcinoma(35;8.77e-06)|Epithelial(32;1.13e-05)|all cancers(32;1.51e-05)		GAGCCCAGCCCAGGTGGGGAC	0.647													28	11					1.2476e-16	1.76453e-16	0.006320	1	0
FRG2B	441581	broad.mit.edu	37	10	135440242	135440242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:135440242C>T	uc010qvg.1	-	1	58	c.5G>A	c.(4-6)GGA>GAA	p.G2E		NM_001080998	NP_001074467	Q96QU4	FRG2B_HUMAN	FSHD region gene 2 family, member B	2						nucleus					0		all_cancers(35;7.01e-07)|all_epithelial(44;1.45e-05)|Lung NSC(174;0.027)|all_lung(145;0.0384)|all_neural(114;0.0726)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;1.12e-06)|all cancers(32;1.43e-06)|Epithelial(32;1.71e-06)		ATTTCCCTTTCCCATGTTGAA	0.532													18	133					0	0	0.007291	0	0
PDDC1	347862	broad.mit.edu	37	11	773625	773625	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:773625G>A	uc001lrc.2	-	4	277	c.252C>T	c.(250-252)GCC>GCT	p.A84A	PDDC1_uc010qwm.1_Silent_p.A34A|PDDC1_uc001lrd.2_Silent_p.A84A|PDDC1_uc001lrf.1_Intron|PDDC1_uc001lrg.1_Intron|PDDC1_uc009ycg.2_Silent_p.A34A|PDDC1_uc010qwn.1_RNA|PDDC1_uc010qwo.1_RNA|PDDC1_uc010qwp.1_Intron|PDDC1_uc010qwq.1_Intron|PDDC1_uc010qwr.1_Silent_p.A84A|PDDC1_uc010qws.1_Silent_p.A34A	NM_182612	NP_872418	Q8NB37	PDDC1_HUMAN	Parkinson disease 7 domain containing 1	84						extracellular region					0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;3.66e-26)|Epithelial(43;2.43e-25)|OV - Ovarian serous cystadenocarcinoma(40;1.33e-19)|BRCA - Breast invasive adenocarcinoma(625;4.29e-05)|Lung(200;0.0582)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CATGGTACCGGGCACCTGGGG	0.642													7	9					0	0	0.004482	0	0
LRDD	55367	broad.mit.edu	37	11	802336	802336	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:802336G>A	uc001lro.1	-	6	1177	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	LRDD_uc009yck.1_RNA|LRDD_uc001lrk.1_Silent_p.F345F|LRDD_uc001lrl.1_Silent_p.F199F|LRDD_uc001lrm.1_Silent_p.F32F|LRDD_uc001lrn.1_Silent_p.F199F|LRDD_uc001lrp.1_5'UTR	NM_145886	NP_665893	Q9HB75	PIDD_HUMAN	leucine rich repeat and death domain containing	345	ZU5 1.				apoptosis|signal transduction	cytoplasm|nucleus	death receptor binding				0		all_cancers(49;1.13e-08)|all_epithelial(84;2.95e-05)|Breast(177;0.000286)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.159)|all_lung(207;0.198)		all cancers(45;1.45e-25)|Epithelial(43;1.17e-24)|OV - Ovarian serous cystadenocarcinoma(40;6.76e-19)|BRCA - Breast invasive adenocarcinoma(625;4.23e-05)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		CTCCCGCTGGGAACTGCAGGC	0.662													5	23					0	0	0.001984	0	0
MUC6	4588	broad.mit.edu	37	11	1020106	1020107	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:1020106_1020107GG>AA	uc001lsw.2	-	29	3842_3843	c.3791_3792CC>TT	c.(3790-3792)CCC>CTT	p.P1264L		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	1264	Pro-rich.|Thr-rich.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		AGGAGGCTGTGGGCTTGGAGGA	0.653													5	6					0	0	0.004672	0	0
MUC2	4583	broad.mit.edu	37	11	1097741	1097741	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:1097741C>T	uc001lsx.1	+	39	13947	c.13920C>T	c.(13918-13920)ATC>ATT	p.I4640I		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4640	VWFD 4.					inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GCGGGGAGATCGTCTCCAACT	0.642													8	14					0	0	0.004482	0	0
MUC5B	727897	broad.mit.edu	37	11	1263664	1263664	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:1263664G>A	uc009ycr.1	+	47	7759	c.7633G>A	c.(7633-7635)GAG>AAG	p.E2545K	MUC5B_uc001ltb.2_Missense_Mutation_p.E1855K	NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	1852	7 X Cys-rich subdomain repeats.|Thr-rich.|Cys-rich subdomain 3.				cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		CTGCAGCCTGGAGACGGGGCT	0.587													11	23					0	0	0.000978	0	0
MUC5B	727897	broad.mit.edu	37	11	1283515	1283515	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:1283515C>T	uc009ycr.1	+	72	18399	c.18273C>T	c.(18271-18273)GTC>GTT	p.V6091V		NM_017511	NP_059981	Q9HC84	MUC5B_HUMAN	SubName: Full=Mucin 5AC, oligomeric mucus/gel-forming;	Error:Variant_position_missing_in_Q9HC84_after_alignment					cell adhesion	extracellular region	extracellular matrix structural constituent|protein binding				0		all_cancers(49;6.97e-08)|all_epithelial(84;3.45e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00141)|Lung(200;0.0853)|LUSC - Lung squamous cell carcinoma(625;0.1)		GGGGGGCAGTCCAGGACCCCC	0.652													20	23					0	0	0.007413	0	0
BRSK2	9024	broad.mit.edu	37	11	1459553	1459553	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:1459553G>A	uc001lti.2	+	3	590	c.204G>A	c.(202-204)GCG>GCA	p.A68A	BRSK2_uc009ycv.1_Silent_p.A68A|BRSK2_uc001lth.1_Silent_p.A68A|BRSK2_uc001ltj.2_Silent_p.A68A|BRSK2_uc001ltk.2_RNA|BRSK2_uc001ltl.2_Silent_p.A68A|BRSK2_uc001ltm.2_Silent_p.A114A|BRSK2_uc001ltn.2_RNA	NM_003957	NP_003948	Q8IWQ3	BRSK2_HUMAN	BR serine/threonine kinase 2	68	Protein kinase.				establishment of cell polarity|neuron differentiation		ATP binding|magnesium ion binding|protein serine/threonine kinase activity				0		all_epithelial(84;4.17e-05)|Breast(177;0.000307)|Ovarian(85;0.0014)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		BRCA - Breast invasive adenocarcinoma(625;0.00144)|Lung(200;0.0713)|LUSC - Lung squamous cell carcinoma(625;0.0842)		GGGAGATCGCGATCCTGAAGC	0.557													22	29					0	0	0.002780	0	0
RRM1	6240	broad.mit.edu	37	11	4147981	4147981	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:4147981T>A	uc001lyw.3	+	13	1707	c.1388T>A	c.(1387-1389)TTT>TAT	p.F463Y	RRM1_uc009yej.2_RNA|RRM1_uc009yei.2_Missense_Mutation_p.F423Y|RRM1_uc010qyc.1_Missense_Mutation_p.F366Y|RRM1_uc010qyd.1_Missense_Mutation_p.F125Y	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	463					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	ACATACGACTTTAAGAAGTTG	0.373													20	33					0	0	0.002299	0	0
OR52B4	143496	broad.mit.edu	37	11	4389181	4389181	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:4389181C>T	uc010qye.1	-	1	345	c.345G>A	c.(343-345)GGG>GGA	p.G115G		NM_001005161	NP_001005161	Q8NGK2	O52B4_HUMAN	olfactory receptor, family 52, subfamily B,	115	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0249)|all_neural(188;0.0577)		Epithelial(150;1.57e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0826)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCAGCAAGATCCCTGACTCAG	0.473													26	14					0	0	0.004656	0	0
OR52I1	390037	broad.mit.edu	37	11	4615299	4615299	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:4615299G>A	uc010qyi.1	+	1	31	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_001005169	NP_001005169	Q8NGK6	O52I1_HUMAN	olfactory receptor, family 52, subfamily I,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;7.98e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		CCACACAATGGAAACCCCTGC	0.468													66	68					0	0	0.003610	0	0
OR52R1	119695	broad.mit.edu	37	11	4825340	4825340	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:4825340G>A	uc010qym.1	-	1	508	c.508C>T	c.(508-510)CAT>TAT	p.H170Y		NM_001005177	NP_001005177	Q8NGF1	O52R1_HUMAN	olfactory receptor, family 52, subfamily R,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.0184)|all_neural(188;0.0227)		Epithelial(150;4.77e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCATGAGCATGAAACCAGAAT	0.527													18	33					0	0	0.006122	0	0
OR51G2	81282	broad.mit.edu	37	11	4936765	4936765	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:4936765G>A	uc001lzr.1	-	1	129	c.129C>T	c.(127-129)TCC>TCT	p.S43S		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		TGCCCGGGATGGAAACCAGAT	0.507													12	39					0	0	0.001368	0	0
OR51A4	401666	broad.mit.edu	37	11	4968319	4968319	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:4968319G>A	uc010qys.1	-	1	12	c.12C>T	c.(10-12)ATC>ATT	p.I4I		NM_001005329	NP_001005329	Q8NGJ6	O51A4_HUMAN	olfactory receptor, family 51, subfamily A,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.22e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0284)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGATGTGTTGATAATGGACA	0.383													21	9					0	0	0.005524	0	0
MMP26	56547	broad.mit.edu	37	11	5010922	5010922	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:5010922C>T	uc001lzv.2	+	2	162	c.144C>T	c.(142-144)CTC>CTT	p.L48L		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	48					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		AGTCGCCACTCCTTACCCAGG	0.473													9	8					0	0	0.001368	0	0
OR52A1	23538	broad.mit.edu	37	11	5173160	5173160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:5173160C>T	uc010qyy.1	-	1	440	c.440G>A	c.(439-441)GGA>GAA	p.G147E		NM_012375	NP_036507	Q9UKL2	O52A1_HUMAN	olfactory receptor, family 52, subfamily A,	147	Helical; Name=4; (Potential).				sensory perception of smell	integral to plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.00106)|Breast(177;0.0155)|all_neural(188;0.0189)		Epithelial(150;2.9e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GACCATAGTTCCTATCTGAAT	0.488													28	21					0	0	0.007291	0	0
OR51V1	283111	broad.mit.edu	37	11	5221055	5221055	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:5221055G>A	uc010qyz.1	-	1	876	c.876C>T	c.(874-876)TTC>TTT	p.F292F		NM_001004760	NP_001004760	Q9H2C8	O51V1_HUMAN	olfactory receptor, family 51, subfamily V,	292	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;2.83e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TTAAAGGTGGGAAAAGGATGT	0.433													23	17					0	0	0.002780	0	0
OR51M1	390059	broad.mit.edu	37	11	5410987	5410987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:5410987C>T	uc010qzc.1	+	1	359	c.359C>T	c.(358-360)TCC>TTC	p.S120F	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004756	NP_001004756	B2RNI9	B2RNI9_HUMAN	olfactory receptor, family 51, subfamily M,	120						integral to membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.98e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CACTCTTTTTCCTTCATGGAG	0.502													97	116					0	0	0.003610	0	0
OR52D1	390066	broad.mit.edu	37	11	5510570	5510570	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:5510570C>A	uc010qzg.1	+	1	634	c.634C>A	c.(634-636)CTG>ATG	p.L212M	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001005163	NP_001005163	Q9H346	O52D1_HUMAN	olfactory receptor, family 52, subfamily D,	212	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;3.46e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GGCCATGGGACTGGATTCCAT	0.493													68	78					2.17656e-39	3.09253e-39	0.003610	1	0
OR52H1	390067	broad.mit.edu	37	11	5565796	5565796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:5565796C>T	uc010qzh.1	-	1	958	c.958G>A	c.(958-960)GGA>AGA	p.G320R	HBG2_uc001mak.1_Intron	NM_001005289	NP_001005289	Q8NGJ2	O52H1_HUMAN	olfactory receptor, family 52, subfamily H,	320	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;5.33e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AAACATCATCCTGTACCCTTA	0.308													28	31					0	0	0.005443	0	0
OR56A3	390083	broad.mit.edu	37	11	5969179	5969179	+	Silent	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:5969179T>G	uc010qzt.1	+	1	603	c.603T>G	c.(601-603)CTT>CTG	p.L201L		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	201	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCAATCACCTTTACCAATTTG	0.473													67	43					0	0	0.003610	0	0
OR56A1	120796	broad.mit.edu	37	11	6048031	6048031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:6048031G>A	uc010qzw.1	-	1	904	c.904C>T	c.(904-906)CGG>TGG	p.R302W		NM_001001917	NP_001001917	Q8NGH5	O56A1_HUMAN	olfactory receptor, family 56, subfamily A,	302	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)	3		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;7.01e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		TCTTTGGTCCGAACCCCATAC	0.448													30	34					0	0	0.001786	0	0
HPX	3263	broad.mit.edu	37	11	6461946	6461946	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:6461946C>T	uc001mdg.2	-	2	159	c.98G>A	c.(97-99)GGG>GAG	p.G33E	HPX_uc009yfc.2_RNA|HPX_uc010rai.1_Missense_Mutation_p.G33E	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	33	O-glycosylated at one, two and three sites.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		AGCAACATTCCCATGGGCACT	0.507													24	39					0	0	0.006320	0	0
OVCH2	341277	broad.mit.edu	37	11	7720302	7720302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:7720302G>A	uc010rbf.1	-	8	920	c.920C>T	c.(919-921)TCC>TTC	p.S307F		NM_198185	NP_937828			ovochymase 2 precursor												0				Epithelial(150;7.9e-08)|BRCA - Breast invasive adenocarcinoma(625;0.197)		CCCACCTCTGGAGCTCTTTCT	0.468													8	8					0	0	0.008291	0	0
OR5P3	120066	broad.mit.edu	37	11	7846984	7846984	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:7846984C>G	uc010rbg.1	-	1	536	c.536G>C	c.(535-537)TGT>TCT	p.C179S		NM_153445	NP_703146	Q8WZ94	OR5P3_HUMAN	olfactory receptor, family 5, subfamily P,	179	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1				Epithelial(150;8.62e-08)|BRCA - Breast invasive adenocarcinoma(625;0.189)		TGAATAGTCACAGAAAAAGTG	0.413													25	17					0	0	0.006320	0	0
SWAP70	23075	broad.mit.edu	37	11	9746214	9746214	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:9746214C>T	uc001mhw.2	+	4	523	c.424C>T	c.(424-426)CTG>TTG	p.L142L	SWAP70_uc001mhv.2_Silent_p.L142L|SWAP70_uc001mhx.2_Silent_p.L84L	NM_015055	NP_055870	Q9UH65	SWP70_HUMAN	SWAP-70 protein	142						cytoplasm|lamellipodium|nucleus|plasma membrane	calcium ion binding|DNA binding			ovary(2)|central_nervous_system(1)	3				all cancers(16;1.21e-10)|Epithelial(150;2.81e-09)|BRCA - Breast invasive adenocarcinoma(625;0.00649)		GATTGAATACCTGCTTAAGAA	0.299													9	19					0	0	0.006214	0	0
ARNTL	406	broad.mit.edu	37	11	13388252	13388252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:13388252C>T	uc001mkr.2	+	11	1001	c.593C>T	c.(592-594)CCT>CTT	p.P198L	ARNTL_uc001mko.2_Missense_Mutation_p.P155L|ARNTL_uc001mkp.2_Missense_Mutation_p.P198L|ARNTL_uc001mkq.2_Missense_Mutation_p.P198L|ARNTL_uc001mks.2_Missense_Mutation_p.P155L|ARNTL_uc001mkt.2_Missense_Mutation_p.P198L|ARNTL_uc001mku.2_RNA|ARNTL_uc009ygm.1_Missense_Mutation_p.P155L|ARNTL_uc001mkv.1_Missense_Mutation_p.P155L|ARNTL_uc001mkw.2_Missense_Mutation_p.P155L|ARNTL_uc001mkx.2_Missense_Mutation_p.P196L	NM_001178	NP_001169	O00327	BMAL1_HUMAN	aryl hydrocarbon receptor nuclear	198	PAS 1.				circadian rhythm|positive regulation of transcription from RNA polymerase II promoter	transcription factor complex	aryl hydrocarbon receptor binding|DNA binding|Hsp90 protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0				Epithelial(150;0.0243)		TACCTGCATCCTAAAGATATT	0.458													55	93					0	0	0.003610	0	0
KCNC1	3746	broad.mit.edu	37	11	17793886	17793886	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:17793886G>A	uc001mnk.3	+	2	1300	c.1245G>A	c.(1243-1245)CTG>CTA	p.L415L	KCNC1_uc009yhc.1_Silent_p.L415L	NM_004976	NP_004967	P48547	KCNC1_HUMAN	Shaw-related voltage-gated potassium channel	415	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			upper_aerodigestive_tract(1)	1						CCGGCATGCTGGTGGGGGCTC	0.602													16	54					0	0	0.006122	0	0
SERGEF	26297	broad.mit.edu	37	11	18026049	18026049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:18026049G>A	uc001mnm.2	-	4	466	c.386C>T	c.(385-387)TCC>TTC	p.S129F	SERGEF_uc009yhd.2_RNA|SERGEF_uc001mnn.2_Missense_Mutation_p.S129F|SERGEF_uc010rcz.1_Missense_Mutation_p.S15F|SERGEF_uc001mno.1_Missense_Mutation_p.S15F	NM_012139	NP_036271	Q9UGK8	SRGEF_HUMAN	deafness locus associated putative guanine	129	RCC1 3.				negative regulation of protein secretion|signal transduction	cytoplasm|nucleus	protein binding|Ran guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1						CTGGCCAAAGGAGTTGGATCC	0.418													7	28					0	0	0.004482	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159652	18159652	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:18159652G>A	uc001mnu.2	+	3	1264	c.903G>A	c.(901-903)GTG>GTA	p.V301V		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	301	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						CGCCTGAGGTGGATGAAGGTG	0.552													12	53					0	0	0.001368	0	0
E2F8	79733	broad.mit.edu	37	11	19259529	19259529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:19259529G>A	uc001mpm.2	-	3	688	c.166C>T	c.(166-168)CCG>TCG	p.P56S	E2F8_uc009yhv.2_RNA|E2F8_uc001mpn.3_Missense_Mutation_p.P56S|E2F8_uc001mpo.1_Missense_Mutation_p.P56S	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	56					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						GGTGTCCACGGCTCTCCCTGA	0.517													22	129					0	0	0.002299	0	0
DBX1	120237	broad.mit.edu	37	11	20178601	20178601	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:20178601C>T	uc001mpw.1	-	3	654	c.654G>A	c.(652-654)CTG>CTA	p.L218L		NM_001029865	NP_001025036	A6NMT0	DBX1_HUMAN	developing brain homeobox 1	218	Homeobox.				multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTTCAGGCCCAGCTTGGCCG	0.642													7	50					0	0	0.008291	0	0
ANO5	203859	broad.mit.edu	37	11	22271783	22271783	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:22271783G>A	uc001mqi.2	+	10	1196	c.879G>A	c.(877-879)AAG>AAA	p.K293K	ANO5_uc001mqj.2_Silent_p.K292K	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	293	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						TTTTTCACAGGAATTATTATG	0.229													8	16					0	0	0.006214	0	0
DEPDC7	91614	broad.mit.edu	37	11	33050310	33050310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:33050310G>A	uc001mub.2	+	4	846	c.754G>A	c.(754-756)GGG>AGG	p.G252R	DEPDC7_uc001muc.2_Missense_Mutation_p.G243R	NM_001077242	NP_001070710	Q96QD5	DEPD7_HUMAN	novel 58.3 KDA protein isoform 1	252					regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity			ovary(1)|skin(1)	2						TCTGGATCGAGGGATTCTCAA	0.393													26	33					0	0	0.001786	0	0
C11orf41	25758	broad.mit.edu	37	11	33564920	33564920	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:33564920C>T	uc001mup.3	+	1	1044	c.920C>T	c.(919-921)ACC>ATC	p.T307I	C11orf41_uc001mun.1_Missense_Mutation_p.T307I	NM_012194	NP_036326	Q6ZVL6	CK041_HUMAN	hypothetical protein LOC25758	307						integral to membrane				ovary(2)	2						GATTTCAGCACCGGTAGTGTC	0.473											OREG0020868	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	32	96					0	0	0.003755	0	0
APIP	51074	broad.mit.edu	37	11	34909908	34909909	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:34909908_34909909CC>TT	uc001mvs.2	-	5	500_501	c.392_393GG>AA	c.(391-393)CGG>CAA	p.R131Q	APIP_uc010reo.1_Missense_Mutation_p.R148Q	NM_015957	NP_057041	Q96GX9	MTNB_HUMAN	APAF1 interacting protein	131					apoptosis|L-methionine salvage	cytoplasm	identical protein binding|metal ion binding|methylthioribulose 1-phosphate dehydratase activity				0	all_epithelial(35;0.161)	all_hematologic(20;0.107)	STAD - Stomach adenocarcinoma(6;0.000425)			TTTTAAACTCCCGTCCTGGAAA	0.391													39	44					0	0	0.004672	0	0
RAG1	5896	broad.mit.edu	37	11	36596675	36596675	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:36596675C>T	uc001mwu.3	+	2	1945	c.1821C>T	c.(1819-1821)GAC>GAT	p.D607D	RAG1_uc001mwt.2_RNA	NM_000448	NP_000439	P15918	RAG1_HUMAN	recombination activating gene 1	607					histone monoubiquitination|immune response|pre-B cell allelic exclusion|protein autoubiquitination|T cell differentiation in thymus|V(D)J recombination	nucleus	endonuclease activity|histone binding|protein homodimerization activity|sequence-specific DNA binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|pancreas(1)|lung(1)|kidney(1)|skin(1)	5	all_lung(20;0.226)	all_hematologic(20;0.107)				GAATGGGAGACGTGAGTGAGA	0.468									Familial_Hemophagocytic_Lymphohistiocytosis				15	28					0	0	0.003163	0	0
LRRC4C	57689	broad.mit.edu	37	11	40136405	40136405	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:40136405G>A	uc001mxa.1	-	2	3402	c.1438C>T	c.(1438-1440)CCA>TCA	p.P480S	LRRC4C_uc001mxc.1_Missense_Mutation_p.P476S|LRRC4C_uc001mxd.1_Missense_Mutation_p.P476S|LRRC4C_uc001mxb.1_Missense_Mutation_p.P476S	NM_020929	NP_065980	Q9HCJ2	LRC4C_HUMAN	netrin-G1 ligand precursor	480					regulation of axonogenesis	integral to membrane	protein binding			ovary(4)|skin(3)|central_nervous_system(1)	8		all_lung(304;0.0575)|Lung NSC(402;0.138)				TCGACCACTGGAGTGGGACCC	0.498													15	10					0	0	0.003163	0	0
EXT2	2132	broad.mit.edu	37	11	44255677	44255677	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:44255677C>T	uc001mxz.2	+	12	2153	c.1819C>T	c.(1819-1821)CTG>TTG	p.L607L	EXT2_uc010rfo.1_Silent_p.L635L|EXT2_uc001mxy.2_Silent_p.L620L|EXT2_uc009ykt.2_Silent_p.L617L|EXT2_uc001mya.2_Silent_p.L640L	NM_207122	NP_997005	Q93063	EXT2_HUMAN	exostosin 2 isoform 2	607	Lumenal (Potential).				glycosaminoglycan biosynthetic process|heparan sulfate proteoglycan biosynthetic process, polysaccharide chain biosynthetic process|ossification|signal transduction	Golgi membrane|integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronosyl-N-acetylglucosaminyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|heparan sulfate N-acetylglucosaminyltransferase activity|N-acetylglucosaminyl-proteoglycan 4-beta-glucuronosyltransferase activity|protein heterodimerization activity			lung(2)|breast(2)|skin(1)	5						TTTTAATTACCTGTATACCTA	0.423			Mis|N|F|S			exostoses|osteosarcoma			Hereditary_Multiple_Exostoses				21	0					0	0	0.003954	0	0
CHRM4	1132	broad.mit.edu	37	11	46407155	46407155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:46407155G>A	uc001nct.1	-	1	953	c.953C>T	c.(952-954)GCC>GTC	p.A318V		NM_000741	NP_000732	P08173	ACM4_HUMAN	cholinergic receptor, muscarinic 4	318	Cytoplasmic (By similarity).				cell proliferation	cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity				0				GBM - Glioblastoma multiforme(35;0.0254)|Lung(87;0.14)	Atropine(DB00572)|Benzquinamide(DB00767)|Cryptenamine(DB00785)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Procyclidine(DB00387)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Thiethylperazine(DB00372)|Tropicamide(DB00809)	GGGCGTGGTGGCCTCTGTGGT	0.637													31	0					0	0	0.007291	0	0
MADD	8567	broad.mit.edu	37	11	47315489	47315489	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:47315489C>T	uc001ner.1	+	22	3662	c.3471C>T	c.(3469-3471)TCC>TCT	p.S1157S	MADD_uc001neq.2_Silent_p.S1119S|MADD_uc001nev.1_Silent_p.S1076S|MADD_uc001nes.1_Silent_p.S1096S|MADD_uc001net.1_Silent_p.S1139S|MADD_uc009yln.1_Silent_p.S1076S|MADD_uc001neu.1_Silent_p.S1076S|MADD_uc001nex.2_Silent_p.S1157S|MADD_uc001nez.2_Silent_p.S1076S|MADD_uc001new.2_Silent_p.S1119S|MADD_uc009ylo.2_Silent_p.S75S	NM_003682	NP_003673	Q8WXG6	MADD_HUMAN	MAP-kinase activating death domain-containing	1157	Ser-rich.				activation of MAPK activity|apoptosis|cell surface receptor linked signaling pathway|regulation of apoptosis|regulation of cell cycle	cytoplasm|integral to membrane|plasma membrane	death receptor binding|protein kinase activator activity|Rab guanyl-nucleotide exchange factor activity			ovary(5)|skin(4)|central_nervous_system(2)	11				Lung(87;0.182)		AGAAAAAGTCCCAGATCAGCG	0.468													13	1					0	0	0.003163	0	0
AGBL2	79841	broad.mit.edu	37	11	47713758	47713758	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:47713758C>T	uc001ngg.2	-	8	845	c.745G>A	c.(745-747)GGA>AGA	p.G249R	AGBL2_uc001ngf.2_5'Flank|AGBL2_uc010rhq.1_Missense_Mutation_p.G211R|AGBL2_uc001ngh.1_Missense_Mutation_p.G193R	NM_024783	NP_079059	Q5U5Z8	CBPC2_HUMAN	carboxypeptidase 2, cytosolic	249					proteolysis	cytosol	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2						TTGACAATTCCTCGTTTGCCT	0.403													36	2					0	0	0.004878	0	0
OR4X1	390113	broad.mit.edu	37	11	48286156	48286156	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:48286156C>T	uc010rht.1	+	1	744	c.744C>T	c.(742-744)TTC>TTT	p.F248F		NM_001004726	NP_001004726	Q8NH49	OR4X1_HUMAN	olfactory receptor, family 4, subfamily X,	248	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3						TCGACCTGTTCTTCATACCTT	0.507													47	5					0	0	0.003610	0	0
OR4C16	219428	broad.mit.edu	37	11	55339658	55339658	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:55339658C>T	uc010rih.1	+	1	55	c.55C>T	c.(55-57)CCT>TCT	p.P19S		NM_001004701	NP_001004701	Q8NGL9	OR4CG_HUMAN	olfactory receptor, family 4, subfamily C,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		all_epithelial(135;0.0748)				GACACAGGATCCTTTTTGGAA	0.403													20	57					0	0	0.001882	0	0
OR4S2	219431	broad.mit.edu	37	11	55418543	55418543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:55418543C>T	uc001nhs.1	+	1	164	c.164C>T	c.(163-165)TCA>TTA	p.S55L		NM_001004059	NP_001004059	Q8NH73	OR4S2_HUMAN	olfactory receptor, family 4, subfamily S,	55	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		all_epithelial(135;0.0748)				CTGTTTAAGTCACCCATGTAT	0.393													40	1					0	0	0.002522	0	0
OR5D14	219436	broad.mit.edu	37	11	55563485	55563485	+	Missense_Mutation	SNP	C	T	T	rs138241507		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:55563485C>T	uc010rim.1	+	1	454	c.454C>T	c.(454-456)CTC>TTC	p.L152F		NM_001004735	NP_001004735	Q8NGL3	OR5DE_HUMAN	olfactory receptor, family 5, subfamily D,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3		all_epithelial(135;0.196)				TGGGTCATATCTCTGGGGCAT	0.498													43	10					0	0	0.007835	0	0
OR8H1	219469	broad.mit.edu	37	11	56058353	56058353	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:56058353G>A	uc010rje.1	-	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001005199	NP_001005199	Q8NGG4	OR8H1_HUMAN	olfactory receptor, family 8, subfamily H,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)|skin(1)	3	Esophageal squamous(21;0.00448)					AGTGAGTAAGGAAAAAATACA	0.403													40	98					0	0	0.002522	0	0
OR8K3	219473	broad.mit.edu	37	11	56086623	56086623	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:56086623A>C	uc010rjf.1	+	1	841	c.841A>C	c.(841-843)ATC>CTC	p.I281L		NM_001005202	NP_001005202	Q8NH51	OR8K3_HUMAN	olfactory receptor, family 8, subfamily K,	281	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|large_intestine(1)|central_nervous_system(1)	4	Esophageal squamous(21;0.00448)					CACCCTGGTTATCCCCATGTT	0.368													5	29					0	0	0.001168	0	0
OR5R1	219479	broad.mit.edu	37	11	56185123	56185123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:56185123C>T	uc010rji.1	-	1	586	c.586G>A	c.(586-588)GAA>AAA	p.E196K		NM_001004744	NP_001004744	Q8NH85	OR5R1_HUMAN	olfactory receptor, family 5, subfamily R,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					ATCAGAATTTCCTTCATGTGT	0.433													17	34					0	0	0.004007	0	0
TNKS1BP1	85456	broad.mit.edu	37	11	57068407	57068407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:57068407C>T	uc001njr.2	-	9	5392	c.5080G>A	c.(5080-5082)GGA>AGA	p.G1694R	TNKS1BP1_uc001njp.2_Missense_Mutation_p.G266R|TNKS1BP1_uc001njq.2_Missense_Mutation_p.G267R|TNKS1BP1_uc001njs.2_Missense_Mutation_p.G1694R	NM_033396	NP_203754	Q9C0C2	TB182_HUMAN	tankyrase 1-binding protein 1	1694	Arg/Glu/Lys-rich (charged).				nuclear-transcribed mRNA poly(A) tail shortening|telomere maintenance via telomerase	cytoskeleton|cytosol|nuclear telomeric heterochromatin	ankyrin binding|enzyme binding			skin(1)	1		all_epithelial(135;0.21)				TTTCCCAGTCCTGGGACCTTG	0.597													35	9					0	0	0.004878	0	0
OR9Q2	219957	broad.mit.edu	37	11	57958682	57958682	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:57958682C>T	uc010rka.1	+	1	720	c.720C>T	c.(718-720)ACC>ACT	p.T240T		NM_001005283	NP_001005283	Q8NGE9	OR9Q2_HUMAN	olfactory receptor, family 9, subfamily Q,	240	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|breast(1)|central_nervous_system(1)	4		Breast(21;0.0589)				CCTTCTCCACCTGCGCCTCCC	0.572													32	14					0	0	0.008361	0	0
OR5B12	390191	broad.mit.edu	37	11	58207156	58207156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:58207156G>A	uc010rkh.1	-	1	469	c.469C>T	c.(469-471)CAT>TAT	p.H157Y		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	157	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TTCCCAGTATGAATGGATGCA	0.448													37	25					0	0	0.008740	0	0
OR5B12	390191	broad.mit.edu	37	11	58207436	58207436	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:58207436G>C	uc010rkh.1	-	1	189	c.189C>G	c.(187-189)AAC>AAG	p.N63K		NM_001004733	NP_001004733	Q96R08	OR5BC_HUMAN	olfactory receptor, family 5, subfamily B,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				CCAGGGAGAGGTTACTGAGGA	0.463													12	1					0	0	0.000978	0	0
FAM111A	63901	broad.mit.edu	37	11	58919359	58919359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:58919359C>T	uc010rkp.1	+	5	445	c.218C>T	c.(217-219)CCC>CTC	p.P73L	FAM111A_uc010rkq.1_Missense_Mutation_p.P73L|FAM111A_uc010rkr.1_Missense_Mutation_p.P73L|FAM111A_uc001nno.2_Missense_Mutation_p.P73L|FAM111A_uc001nnp.2_Missense_Mutation_p.P73L|FAM111A_uc001nnq.2_Missense_Mutation_p.P73L	NM_001142521	NP_001135993	Q96PZ2	F111A_HUMAN	hypothetical protein LOC63901	73					proteolysis		serine-type endopeptidase activity			ovary(3)	3		all_epithelial(135;0.139)				CAGACCATGCCCCAAAATAGG	0.403													47	22					0	0	0.003610	0	0
TMEM216	51259	broad.mit.edu	37	11	61161357	61161357	+	Silent	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:61161357T>G	uc010rlj.1	+	3	410	c.117T>G	c.(115-117)GGT>GGG	p.G39G	TMEM216_uc001nrn.1_5'UTR	NM_016499	NP_057583	Q9P0N5	TM216_HUMAN	transmembrane protein 216	39						integral to membrane					0						TATTGGCAGGTGTCCTGCTAC	0.438													8	24					0	0	0.001523	0	0
DAGLA	747	broad.mit.edu	37	11	61505676	61505676	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:61505676C>T	uc001nsa.2	+	16	1764	c.1653C>T	c.(1651-1653)CCC>CCT	p.P551P		NM_006133	NP_006124	Q9Y4D2	DGLA_HUMAN	neural stem cell-derived dendrite regulator	551	Cytoplasmic (Potential).				cell death|lipid catabolic process|platelet activation	integral to membrane|plasma membrane	acylglycerol lipase activity|metal ion binding|triglyceride lipase activity			ovary(2)|central_nervous_system(1)	3				READ - Rectum adenocarcinoma(4;0.219)		GCACCAAGCCCAAAGTGAGCC	0.637													4	7					0	0	0.000602	0	0
C11orf9	745	broad.mit.edu	37	11	61539013	61539013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:61539013C>T	uc001nsc.1	+	6	878	c.782C>T	c.(781-783)TCC>TTC	p.S261F	C11orf9_uc001nse.1_Missense_Mutation_p.S252F	NM_001127392	NP_001120864	Q9Y2G1	MRF_HUMAN	myelin gene regulatory factor isoform 2	261	NDT80.|Pro-rich.				central nervous system myelination|positive regulation of myelination|positive regulation of transcription, DNA-dependent	integral to membrane|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			breast(1)	1						CACTCTGAATCCCCCCCCAGC	0.637													32	22					0	0	0.004289	0	0
MARK2	2011	broad.mit.edu	37	11	63667508	63667508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:63667508G>A	uc001nxw.2	+	8	1273	c.694G>A	c.(694-696)GAT>AAT	p.D232N	MARK2_uc001nxx.2_Missense_Mutation_p.D232N|MARK2_uc001nxy.2_Missense_Mutation_p.D232N|MARK2_uc001nxv.3_Missense_Mutation_p.D232N|MARK2_uc001nxz.3_Missense_Mutation_p.D199N|MARK2_uc009yoy.2_Missense_Mutation_p.D199N	NM_001039469	NP_001034558	Q7KZI7	MARK2_HUMAN	MAP/microtubule affinity-regulating kinase 2	232	Protein kinase.				cell differentiation|establishment or maintenance of epithelial cell apical/basal polarity|intracellular protein kinase cascade|multicellular organismal development|response to oxidative stress	plasma membrane	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			stomach(1)|ovary(1)|lung(1)	3						ACCCGAGGTGGATGTGTGGAG	0.498													40	61					0	0	0.006230	0	0
FERMT3	83706	broad.mit.edu	37	11	63987457	63987457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:63987457G>A	uc001nyl.2	+	10	1335	c.1186G>A	c.(1186-1188)GGG>AGG	p.G396R	FERMT3_uc001nym.2_Missense_Mutation_p.G392R	NM_178443	NP_848537	Q86UX7	URP2_HUMAN	fermitin family homolog 3 long form	396	PH.|FERM.				integrin activation|leukocyte cell-cell adhesion|platelet aggregation|regulation of cell-cell adhesion mediated by integrin	cell junction|cell projection|podosome	integrin binding			ovary(1)	1						CGAGGCCCCTGGGGACCCCAT	0.622													6	12					0	0	0.003080	0	0
NAALADL1	10004	broad.mit.edu	37	11	64825683	64825683	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:64825683C>T	uc001ocn.2	-	2	241	c.225G>A	c.(223-225)CGG>CGA	p.R75R	NAALADL1_uc010rnw.1_5'UTR	NM_005468	NP_005459	Q9UQQ1	NALDL_HUMAN	N-acetylated alpha-linked acidic	75	Extracellular (Potential).				proteolysis	apical plasma membrane|integral to membrane	carboxypeptidase activity|dipeptidase activity|metal ion binding|metallopeptidase activity				0						GGTCCTCATCCCGAGGGCTGG	0.677													3	9					0	0	0.004672	0	0
MAP3K11	4296	broad.mit.edu	37	11	65375207	65375207	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:65375207G>A	uc001oew.2	-	4	1643	c.1150C>T	c.(1150-1152)CTA>TTA	p.L384L	MAP3K11_uc001oev.2_5'Flank|MAP3K11_uc010rol.1_Silent_p.L127L|MAP3K11_uc001oex.1_Intron	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	384					activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						ATTTCCCGTAGGACCTGTGCC	0.657													11	21					0	0	0.000978	0	0
PCNXL3	399909	broad.mit.edu	37	11	65385995	65385995	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:65385995C>T	uc001oey.2	+	6	1162	c.1162C>T	c.(1162-1164)CTG>TTG	p.L388L		NM_032223	NP_115599	Q9H6A9	PCX3_HUMAN	pecanex-like 3	388						integral to membrane					0						GGACTTGGCCCTGCTACGGCC	0.657													3	6					0	0	0.004672	0	0
SIPA1	6494	broad.mit.edu	37	11	65417270	65417270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:65417270C>T	uc001ofb.2	+	12	2847	c.2680C>T	c.(2680-2682)CCG>TCG	p.P894S	SIPA1_uc010rom.1_Missense_Mutation_p.P792S|SIPA1_uc001ofd.2_Missense_Mutation_p.P894S	NM_006747	NP_006738	Q96FS4	SIPA1_HUMAN	signal-induced proliferation-associated protein	894					cell proliferation|cytoskeleton organization|intracellular signal transduction|negative regulation of cell adhesion|negative regulation of cell cycle|negative regulation of cell growth	cytosol|endomembrane system|membrane|perinuclear region of cytoplasm	Rap GTPase activator activity				0						CAAGGGCAACCCGGCGCCGGA	0.607													9	22					0	0	0.008291	0	0
CATSPER1	117144	broad.mit.edu	37	11	65792699	65792699	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:65792699C>T	uc001ogt.2	-	1	1290	c.1152G>A	c.(1150-1152)CAG>CAA	p.Q384Q		NM_053054	NP_444282	Q8NEC5	CTSR1_HUMAN	sperm-associated cation channel 1	384	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	protein binding			ovary(2)	2						TGGAGATATCCTGGGTATGGA	0.537													13	24					0	0	0.001855	0	0
CD248	57124	broad.mit.edu	37	11	66082377	66082377	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:66082377C>A	uc001ohm.1	-	1	2139	c.2122G>T	c.(2122-2124)GTG>TTG	p.V708L		NM_020404	NP_065137	Q9HCU0	CD248_HUMAN	tumor endothelial marker 1 precursor	708	Helical; (Potential).					integral to membrane|proteinaceous extracellular matrix	calcium ion binding|sugar binding			large_intestine(3)	3					Cefalotin(DB00456)	GTGCAGTACACGATGCCCAGT	0.602													5	7					0.00116845	0.00163171	0.001168	1	0
RIN1	9610	broad.mit.edu	37	11	66102660	66102660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:66102660G>A	uc001ohn.1	-	6	737	c.610C>T	c.(610-612)CCC>TCC	p.P204S	RIN1_uc010roy.1_5'UTR|RIN1_uc009yrd.1_5'UTR|RIN1_uc010roz.1_Missense_Mutation_p.P99S|RIN1_uc010rpa.1_Missense_Mutation_p.P99S	NM_004292	NP_004283	Q13671	RIN1_HUMAN	ras inhibitor RIN1	204					endocytosis|signal transduction	cytoplasm|cytoskeleton|plasma membrane	GTPase activator activity|protein binding			lung(2)|breast(1)	3						TTCAGCTGGGGCAACACTGGG	0.662													6	14					0	0	0.001168	0	0
NPAS4	266743	broad.mit.edu	37	11	66189691	66189691	+	Silent	SNP	G	A	A	rs147825645	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:66189691G>A	uc001ohx.1	+	2	452	c.276G>A	c.(274-276)GGG>GGA	p.G92G	NPAS4_uc010rpc.1_5'UTR	NM_178864	NP_849195	Q8IUM7	NPAS4_HUMAN	neuronal PAS domain protein 4	92	PAS 1.				transcription, DNA-dependent		DNA binding|signal transducer activity				0						CAGCCGAGGGGAAATTGCTCT	0.602													10	45					0	0	0.008291	0	0
DPP3	10072	broad.mit.edu	37	11	66276699	66276699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:66276699G>A	uc001oig.1	+	18	2253	c.2191G>A	c.(2191-2193)GAG>AAG	p.E731K	DPP3_uc001oif.1_Missense_Mutation_p.E731K|DPP3_uc010rpe.1_Missense_Mutation_p.E720K|DPP3_uc001oih.1_Silent_p.V98V|BBS1_uc001oii.1_Silent_p.V24V|BBS1_uc010rpf.1_5'Flank|BBS1_uc010rpg.1_5'Flank|BBS1_uc001oij.1_5'Flank|BBS1_uc001oik.1_5'Flank|BBS1_uc001oil.1_5'Flank	NM_005700	NP_005691	Q9NY33	DPP3_HUMAN	dipeptidyl peptidase III	731					proteolysis	cytoplasm	aminopeptidase activity|dipeptidyl-peptidase activity|metal ion binding|metallopeptidase activity			ovary(1)|skin(1)	2						GGGCCCCAGTGAGGCCCCATC	0.587													4	9					0	0	0.000248	0	0
SYT12	91683	broad.mit.edu	37	11	66807475	66807475	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:66807475C>T	uc009yrl.2	+	4	652	c.422C>T	c.(421-423)TCC>TTC	p.S141F	SYT12_uc001oju.2_Missense_Mutation_p.S141F	NM_177963	NP_808878	Q8IV01	SYT12_HUMAN	synaptotagmin XII	141	Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane				ovary(1)	1						AACTCCATCTCCTCCGTGAGC	0.632													13	26					0	0	0.001368	0	0
PITPNM1	9600	broad.mit.edu	37	11	67260519	67260519	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:67260519G>A	uc001olx.2	-	22	3546	c.3357C>T	c.(3355-3357)ATC>ATT	p.I1119I	PITPNM1_uc001olw.2_Silent_p.I401I|PITPNM1_uc001oly.2_Silent_p.I1119I|PITPNM1_uc001olz.2_Silent_p.I1118I	NM_004910	NP_004901	O00562	PITM1_HUMAN	phosphatidylinositol transfer protein,	1119					brain development|lipid metabolic process|phototransduction|protein transport	cleavage furrow|endoplasmic reticulum membrane|Golgi cisterna membrane|lipid particle|membrane fraction|midbody	metal ion binding|phosphatidylinositol transporter activity			lung(2)|central_nervous_system(1)	3						AACCGGCCACGATGTTCAGTT	0.647													61	47					0	0	0.003610	0	0
ALDH3B2	222	broad.mit.edu	37	11	67433650	67433650	+	Missense_Mutation	SNP	C	T	T	rs139967003		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:67433650C>T	uc001omr.2	-	6	701	c.262G>A	c.(262-264)GGA>AGA	p.G88R	ALDH3B2_uc001oms.2_Missense_Mutation_p.G88R|ALDH3B2_uc009ysa.1_Missense_Mutation_p.G88R	NM_000695	NP_000686	P48448	AL3B2_HUMAN	aldehyde dehydrogenase 3B2	88					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase			lung(1)|kidney(1)	2					NADH(DB00157)	TCCTGGGGTCCGCCCAGCACC	0.647													17	46					0	0	0.001882	0	0
ALDH3B1	221	broad.mit.edu	37	11	67789038	67789038	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:67789038C>A	uc010rpy.1	+	8	763	c.647C>A	c.(646-648)CCT>CAT	p.P216H	ALDH3B1_uc001omz.2_Missense_Mutation_p.P216H|ALDH3B1_uc001ona.2_Missense_Mutation_p.P179H|ALDH3B1_uc001onb.2_RNA	NM_001161473	NP_001154945	P43353	AL3B1_HUMAN	aldehyde dehydrogenase 3B1 isoform a	216					alcohol metabolic process|cellular aldehyde metabolic process|lipid metabolic process		3-chloroallyl aldehyde dehydrogenase activity|aldehyde dehydrogenase				0					NADH(DB00157)	GGCAAGAACCCTTGCTACGTG	0.642											OREG0021141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	61	47					1.7104e-27	2.42797e-27	0.003610	1	0
LRP5	4041	broad.mit.edu	37	11	68171002	68171002	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:68171002C>T	uc001ont.2	+	8	1711	c.1636C>T	c.(1636-1638)CCG>TCG	p.P546S	LRP5_uc009ysg.2_5'UTR	NM_002335	NP_002326	O75197	LRP5_HUMAN	low density lipoprotein receptor-related protein	546	LDL-receptor class B 9.|Beta-propeller 2.|Extracellular (Potential).				adipose tissue development|bone marrow development|bone morphogenesis|canonical Wnt receptor signaling pathway|cholesterol homeostasis|endocytosis|glucose catabolic process|negative regulation of osteoblast differentiation|negative regulation of protein serine/threonine kinase activity|positive regulation of fat cell differentiation|positive regulation of mesenchymal cell proliferation|positive regulation of mitosis|positive regulation of transcription from RNA polymerase II promoter|regulation of blood pressure|regulation of canonical Wnt receptor signaling pathway|retina morphogenesis in camera-type eye|retinal blood vessel morphogenesis|Wnt receptor signaling pathway involved in dorsal/ventral axis specification	endoplasmic reticulum|integral to membrane|plasma membrane|receptor complex	protein binding|receptor activity			lung(2)|skin(2)|ovary(1)|pancreas(1)|breast(1)	7						GGACAAGCTCCCGCACATTTT	0.602													21	25					0	0	0.007291	0	0
SAPS3	55291	broad.mit.edu	37	11	68315627	68315627	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:68315627C>T	uc001onw.2	+	5	774	c.507C>T	c.(505-507)CTC>CTT	p.L169L	SAPS3_uc010rqb.1_Silent_p.L78L|SAPS3_uc001onv.2_Silent_p.L169L|SAPS3_uc001ony.3_Silent_p.L169L|SAPS3_uc001onx.2_Silent_p.L169L|SAPS3_uc009ysh.2_Silent_p.L169L|SAPS3_uc001onu.2_Silent_p.L169L|SAPS3_uc010rqc.1_Silent_p.L78L	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	169					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			TGCTCAGGCTCCTGACGTGTA	0.448													14	90					0	0	0.002450	0	0
IGHMBP2	3508	broad.mit.edu	37	11	68705749	68705749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:68705749C>T	uc001ook.1	+	14	2813	c.2711C>T	c.(2710-2712)GCC>GTC	p.A904V	IGHMBP2_uc001ool.1_Missense_Mutation_p.A528V	NM_002180	NP_002171	P38935	SMBP2_HUMAN	immunoglobulin mu binding protein 2	904	AN1-type.				cell death|DNA recombination|DNA repair|DNA replication|protein homooligomerization|transcription, DNA-dependent|translation	axon|growth cone|nucleus|ribonucleoprotein complex	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' RNA helicase activity|ribosome binding|single-stranded DNA binding|transcription factor binding|tRNA binding|zinc ion binding				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			AAGTGCACAGCCGGCGTCACA	0.642													12	21					0	0	0.001855	0	0
TPCN2	219931	broad.mit.edu	37	11	68839459	68839459	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:68839459C>T	uc001oos.2	+	11	1145	c.1029C>T	c.(1027-1029)TCC>TCT	p.S343S	TPCN2_uc009ysk.1_RNA|TPCN2_uc001oor.2_Silent_p.S258S|TPCN2_uc010rqg.1_Silent_p.S343S|TPCN2_uc001oot.2_5'Flank	NM_139075	NP_620714	Q8NHX9	TPC2_HUMAN	two pore segment channel 2	343	Cytoplasmic (Potential).				cellular calcium ion homeostasis|smooth muscle contraction	endosome membrane|integral to membrane|lysosomal membrane	NAADP-sensitive calcium-release channel activity|voltage-gated calcium channel activity				0			STAD - Stomach adenocarcinoma(18;0.0208)|LUAD - Lung adenocarcinoma(13;0.0713)			TCCTATCCTCCATGGTGGGGG	0.632													20	21					0	0	0.001882	0	0
SHANK2	22941	broad.mit.edu	37	11	70332684	70332684	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:70332684G>A	uc001oqc.2	-	21	3792	c.3714C>T	c.(3712-3714)GCC>GCT	p.A1238A	SHANK2_uc010rqn.1_Silent_p.A650A|SHANK2_uc001opz.2_Silent_p.A643A|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	859					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			CGGCCTTGGGGGCCTCCCCTT	0.627													20	26					0	0	0.002299	0	0
DHCR7	1717	broad.mit.edu	37	11	71150111	71150111	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:71150111G>A	uc001oqk.2	-	7	895	c.645C>T	c.(643-645)TTC>TTT	p.F215F	DHCR7_uc001oql.2_Silent_p.F215F	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	215					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	AGTTGTAAAAGAAATTGCCTG	0.443									Smith-Lemli-Opitz_syndrome				9	14					0	0	0.006214	0	0
KRTAP5-11	440051	broad.mit.edu	37	11	71293630	71293631	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:71293630_71293631GA>AT	uc001oqu.2	-	1	291_292	c.253_254TC>AT	c.(253-255)TCC>ATC	p.S85I		NM_001005405	NP_001005405	Q6L8G4	KR511_HUMAN	keratin associated protein 5-11	85	6 X 4 AA repeats of C-C-X-P.					keratin filament					0						ACAGCAGTTGGACTGGGAGCAG	0.361													35	58					0	0	0.004672	0	0
PDE2A	5138	broad.mit.edu	37	11	72289953	72289953	+	Silent	SNP	C	G	G	rs143835725		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:72289953C>G	uc010rrc.1	-	28	2700	c.2457G>C	c.(2455-2457)ACG>ACC	p.T819T	PDE2A_uc001oso.2_Silent_p.T798T|PDE2A_uc010rra.1_Silent_p.T812T|PDE2A_uc001osn.2_Silent_p.T563T|PDE2A_uc010rrb.1_Silent_p.T810T|PDE2A_uc010rrd.1_Silent_p.T704T	NM_002599	NP_002590	O00408	PDE2A_HUMAN	phosphodiesterase 2A isoform 1	819	Catalytic (By similarity).				platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP binding|cGMP-stimulated cyclic-nucleotide phosphodiesterase activity|metal ion binding			ovary(2)|breast(1)|skin(1)	4			BRCA - Breast invasive adenocarcinoma(5;3.55e-05)		Sildenafil(DB00203)|Sulindac(DB00605)	CGATCTTTCTCGTAGTCTTCC	0.592													100	120					0	0	0.003610	0	0
C2CD3	26005	broad.mit.edu	37	11	73753138	73753138	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:73753138G>A	uc001ouu.2	-	29	5848	c.5621C>T	c.(5620-5622)TCA>TTA	p.S1874L	C2CD3_uc001out.2_RNA	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	1874						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					GGACAAAGGTGATGTGGTCAG	0.493													16	66					0	0	0.003163	0	0
ARRB1	408	broad.mit.edu	37	11	74979994	74979994	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:74979994G>A	uc001owe.1	-	14	1254	c.1032C>T	c.(1030-1032)GCC>GCT	p.A344A	ARRB1_uc001owf.1_Silent_p.A336A	NM_004041	NP_004032	P49407	ARRB1_HUMAN	arrestin beta 1 isoform A	344	Interaction with TRAF6.				G-protein coupled receptor internalization|histone H4 acetylation|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of NF-kappaB transcription factor activity|negative regulation of protein ubiquitination|platelet activation|positive regulation of ERK1 and ERK2 cascade|positive regulation of histone acetylation|positive regulation of Rho protein signal transduction|positive regulation of transcription from RNA polymerase II promoter|post-Golgi vesicle-mediated transport|proteasomal ubiquitin-dependent protein catabolic process|protein transport|protein ubiquitination|signal transduction|stress fiber assembly|transcription from RNA polymerase II promoter	chromatin|coated pit|cytoplasmic vesicle membrane|cytosol|Golgi membrane|lysosomal membrane|membrane fraction|nucleus|plasma membrane|pseudopodium|soluble fraction	angiotensin receptor binding|enzyme inhibitor activity|GTPase activator activity|insulin-like growth factor receptor binding|transcription factor binding|transcription regulatory region DNA binding|ubiquitin protein ligase binding			breast(2)	2						GCAGTTCCACGGCCACGTCGC	0.587													20	25					0	0	0.002780	0	0
C11orf30	56946	broad.mit.edu	37	11	76234319	76234319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:76234319C>T	uc001oxl.2	+	12	1948	c.1805C>T	c.(1804-1806)ACG>ATG	p.T602M	C11orf30_uc001oxm.2_Missense_Mutation_p.T518M|C11orf30_uc010rsb.1_Missense_Mutation_p.T617M|C11orf30_uc010rsc.1_Missense_Mutation_p.T617M|C11orf30_uc001oxn.2_Missense_Mutation_p.T603M|C11orf30_uc010rsd.1_Missense_Mutation_p.T616M	NM_020193	NP_064578	Q7Z589	EMSY_HUMAN	EMSY protein	602	Thr-rich.				chromatin modification|DNA repair|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus				ovary(5)|skin(1)	6						GTTGTCACAACGTTGCTAAAT	0.423													39	16					0	0	0.006230	0	0
TSKU	25987	broad.mit.edu	37	11	76507464	76507464	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:76507464C>T	uc001oxt.2	+	2	976	c.804C>T	c.(802-804)AAC>AAT	p.N268N		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	268	LRR 9.					extracellular region					0	Ovarian(111;0.112)					CCAAGCTTAACTGGGCAGGAG	0.667													70	12					0	0	0.003610	0	0
CAPN5	726	broad.mit.edu	37	11	76834767	76834767	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:76834767C>A	uc001oxx.2	+	13	1959	c.1774C>A	c.(1774-1776)CTG>ATG	p.L592M	CAPN5_uc009yup.2_Missense_Mutation_p.L632M|CAPN5_uc009yuq.2_Missense_Mutation_p.L628M|CAPN5_uc001oxy.2_Missense_Mutation_p.L632M|CAPN5_uc001oya.2_Missense_Mutation_p.L154M	NM_004055	NP_004046	O15484	CAN5_HUMAN	calpain 5	592	C2.				proteolysis|signal transduction	intracellular	calcium-dependent cysteine-type endopeptidase activity				0						GGATGAATTTCTGGGCCAGGT	0.602													13	120					0.000151284	0.000211935	0.001855	1	0
GAB2	9846	broad.mit.edu	37	11	77931434	77931434	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:77931434C>T	uc001ozh.2	-	9	1818	c.1818G>A	c.(1816-1818)AAG>AAA	p.K606K	GAB2_uc001ozg.2_Silent_p.K568K	NM_080491	NP_536739	Q9UQC2	GAB2_HUMAN	GRB2-associated binding protein 2 isoform a	606					osteoclast differentiation|phosphatidylinositol-mediated signaling|positive regulation of cell proliferation|positive regulation of mast cell degranulation	cytosol|plasma membrane	phosphatidylinositol-3,4,5-trisphosphate binding|phosphatidylinositol-3,4-bisphosphate binding|transmembrane receptor protein tyrosine kinase adaptor activity			ovary(5)|lung(1)	6	all_cancers(14;3.31e-18)|all_epithelial(13;5.3e-21)|Breast(9;5.6e-16)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;1.58e-23)			CGGTGCTCTTCTTAGGGGCAG	0.577													14	38					0	0	0.002450	0	0
DLG2	1740	broad.mit.edu	37	11	83170881	83170881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:83170881G>A	uc001paj.2	-	23	2896	c.2593C>T	c.(2593-2595)CCC>TCC	p.P865S	DLG2_uc001pai.2_Missense_Mutation_p.P744S|DLG2_uc010rsy.1_Missense_Mutation_p.P814S|DLG2_uc010rsz.1_Missense_Mutation_p.P861S|DLG2_uc010rta.1_Missense_Mutation_p.P847S|DLG2_uc001pak.2_Missense_Mutation_p.P970S|DLG2_uc010rsw.1_Missense_Mutation_p.P329S|DLG2_uc010rsx.1_Missense_Mutation_p.P342S	NM_001364	NP_001355	Q15700	DLG2_HUMAN	chapsyn-110 isoform 2	865						cell junction|postsynaptic density|postsynaptic membrane	guanylate kinase activity|protein binding|protein binding			ovary(3)|pancreas(2)|skin(1)	6		all_cancers(6;0.00791)|Acute lymphoblastic leukemia(157;4.44e-05)|all_hematologic(158;0.0036)				TCCTTTGAGGGAATCCAGATG	0.358													29	88					0	0	0.002096	0	0
CCDC89	220388	broad.mit.edu	37	11	85396053	85396053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:85396053G>A	uc001pau.1	-	1	1268	c.1121C>T	c.(1120-1122)CCA>CTA	p.P374L		NM_152723	NP_689936	Q8N998	CCD89_HUMAN	coiled-coil domain containing 89	374						cytoplasm|nucleus					0		Acute lymphoblastic leukemia(157;4.88e-06)|all_hematologic(158;0.00572)				ACTTCCCTATGGAGAGAGATG	0.418													23	41					0	0	0.006320	0	0
CTSC	1075	broad.mit.edu	37	11	88033707	88033708	+	Nonsense_Mutation	DNP	GA	AC	AC			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:88033707_88033708GA>AC	uc001pck.3	-	5	848_849	c.747_748TC>GT	c.(745-750)GTTCGA>GTGTGA	p.R250*	CTSC_uc001pcl.3_Nonsense_Mutation_p.R102*	NM_001814	NP_001805	P53634	CATC_HUMAN	cathepsin C isoform a preproprotein	250					immune response	lysosome	cysteine-type endopeptidase activity				0		Acute lymphoblastic leukemia(157;2.31e-05)|all_hematologic(158;0.00824)				CCTTGGTTTCGAACAGGACTGA	0.371													17	19					0	0	0.004672	0	0
FAT3	120114	broad.mit.edu	37	11	92531893	92531893	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:92531893T>C	uc001pdj.3	+	9	5731	c.5714T>C	c.(5713-5715)GTT>GCT	p.V1905A		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1905	Cadherin 17.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTTCTGAAAGTTAGTGCCACA	0.433										TCGA Ovarian(4;0.039)			243	17					0	0	0.003610	0	0
HEPHL1	341208	broad.mit.edu	37	11	93778858	93778858	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:93778858G>C	uc001pep.2	+	2	347	c.190G>C	c.(190-192)GAA>CAA	p.E64Q		NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	64	Plastocyanin-like 1.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				CTTATTTCTCGAAAGAGGGCC	0.378													6	0					0	0	0.001168	0	0
HEPHL1	341208	broad.mit.edu	37	11	93806289	93806289	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:93806289G>A	uc001pep.2	+	7	1488	c.1331G>A	c.(1330-1332)AGA>AAA	p.R444K	uc001pen.1_Intron	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	444	Plastocyanin-like 3.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TTTACTAAAAGAAAGAGACTC	0.423													14	4					0	0	0.004990	0	0
MAML2	84441	broad.mit.edu	37	11	95826426	95826426	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:95826426G>A	uc001pfw.1	-	2	2054	c.769C>T	c.(769-771)CTG>TTG	p.L257L		NM_032427	NP_115803	Q8IZL2	MAML2_HUMAN	mastermind-like 2	257					Notch signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear speck	transcription coactivator activity		CRTC1/MAML2(516)|CRTC3/MAML2(26)	salivary_gland(500)|lung(36)|thyroid(4)|breast(3)|skin(2)|ovary(1)	546		Acute lymphoblastic leukemia(157;2.63e-05)|all_hematologic(158;0.00837)				ATGTTAAACAGGCCATTGCCA	0.478			T	MECT1|CRTC3	salivary gland mucoepidermoid								11	29					0	0	0.008291	0	0
CNTN5	53942	broad.mit.edu	37	11	99715827	99715827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:99715827G>A	uc001pga.2	+	6	749	c.410G>A	c.(409-411)CGA>CAA	p.R137Q	CNTN5_uc009ywv.1_Missense_Mutation_p.R137Q|CNTN5_uc001pfz.2_Missense_Mutation_p.R137Q|CNTN5_uc001pgb.2_Missense_Mutation_p.R63Q	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	137	Ig-like C2-type 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		AGATGGCTTCGAAATGGAACA	0.353													12	42					0	0	0.000978	0	0
CNTN5	53942	broad.mit.edu	37	11	100211914	100211914	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:100211914G>A	uc001pga.2	+	23	3346	c.3007G>A	c.(3007-3009)GAA>AAA	p.E1003K	CNTN5_uc001pgb.2_Missense_Mutation_p.E929K|CNTN5_uc010ruk.1_Missense_Mutation_p.E274K	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	1003	Fibronectin type-III 4.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ATTAGCCAACGAATCTGAAGT	0.433													25	86					0	0	0.003954	0	0
TRPC6	7225	broad.mit.edu	37	11	101343009	101343009	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:101343009C>T	uc001pgk.3	-	8	2489	c.2064G>A	c.(2062-2064)GTG>GTA	p.V688V	TRPC6_uc009ywy.2_Silent_p.V572V|TRPC6_uc009ywz.1_Silent_p.V633V	NM_004621	NP_004612	Q9Y210	TRPC6_HUMAN	transient receptor potential cation channel,	688	Extracellular (Potential).				axon guidance|platelet activation|positive regulation of calcium ion transport via store-operated calcium channel activity	integral to membrane|plasma membrane	protein binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(157;0.000918)|all_hematologic(158;0.0162)		BRCA - Breast invasive adenocarcinoma(274;0.0442)		CCACTGATTTCACTTCAGAAA	0.318													36	42					0	0	0.003755	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101771207	101771207	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:101771207G>A	uc001pgl.2	-	7	1211	c.615C>T	c.(613-615)TTC>TTT	p.F205F		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	205	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		ACAACCTCTGGAAATCAATTA	0.348													18	51					0	0	0.002299	0	0
BIRC3	330	broad.mit.edu	37	11	102201752	102201752	+	Silent	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:102201752A>G	uc001pgx.2	+	7	1326	c.1104A>G	c.(1102-1104)GAA>GAG	p.E368E		NM_182962	NP_892007	Q13489	BIRC3_HUMAN	baculoviral IAP repeat-containing protein 3	368					anti-apoptosis|apoptosis|cell surface receptor linked signaling pathway	cytoplasm|nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|skin(1)	4	all_cancers(8;0.00044)|all_epithelial(12;0.00348)|Lung NSC(15;0.227)	Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0093)	Lung(13;0.109)|LUSC - Lung squamous cell carcinoma(19;0.151)	BRCA - Breast invasive adenocarcinoma(274;0.0146)		AACCTGGAGAAGACCATTCAG	0.333			T	MALT1	MALT								24	32					0	0	0.005443	0	0
MMP27	64066	broad.mit.edu	37	11	102567566	102567566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:102567566C>T	uc001phd.1	-	5	643	c.620G>A	c.(619-621)GGA>GAA	p.G207E		NM_022122	NP_071405	Q9H306	MMP27_HUMAN	matrix metalloproteinase 27 precursor	207					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3	all_cancers(8;0.000843)|all_epithelial(12;0.00362)|Lung NSC(15;0.21)	all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.0509)|Lung(13;0.0696)|LUSC - Lung squamous cell carcinoma(19;0.13)|all cancers(10;0.176)	BRCA - Breast invasive adenocarcinoma(274;0.0151)		CAAGTTGAATCCTTGATAATA	0.403													7	18					0	0	0.001984	0	0
ATM	472	broad.mit.edu	37	11	108121480	108121480	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:108121480T>A	uc001pkb.1	+	10	1673	c.1288T>A	c.(1288-1290)TGT>AGT	p.C430S	ATM_uc009yxr.1_Missense_Mutation_p.C430S	NM_000051	NP_000042	Q13315	ATM_HUMAN	ataxia telangiectasia mutated isoform 1	430					cell cycle arrest|cellular response to gamma radiation|DNA damage induced protein phosphorylation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|double-strand break repair via homologous recombination|G2/M transition DNA damage checkpoint|histone mRNA catabolic process|mitotic cell cycle spindle assembly checkpoint|negative regulation of B cell proliferation|peptidyl-serine phosphorylation|positive regulation of DNA damage response, signal transduction by p53 class mediator|pre-B cell allelic exclusion|protein autophosphorylation|reciprocal meiotic recombination|replicative senescence	cytoplasmic membrane-bounded vesicle|nucleoplasm	1-phosphatidylinositol-3-kinase activity|ATP binding|DNA binding|DNA-dependent protein kinase activity|identical protein binding|protein complex binding|protein dimerization activity|protein N-terminus binding			haematopoietic_and_lymphoid_tissue(174)|lung(25)|breast(15)|large_intestine(9)|ovary(5)|kidney(5)|central_nervous_system(4)|upper_aerodigestive_tract(1)|stomach(1)|NS(1)	240		all_cancers(61;9.64e-12)|all_epithelial(67;9.97e-08)|Melanoma(852;2.55e-06)|Acute lymphoblastic leukemia(157;3.95e-05)|all_hematologic(158;0.00014)|Breast(348;0.0258)|all_neural(303;0.072)		Epithelial(105;9.05e-06)|BRCA - Breast invasive adenocarcinoma(274;1.06e-05)|all cancers(92;0.000208)|Colorectal(284;0.116)|OV - Ovarian serous cystadenocarcinoma(223;0.147)		TTTACCTAACTGTGAGCTGTC	0.378			D|Mis|N|F|S		T-PLL	leukemia|lymphoma|medulloblastoma|glioma		Genes_defective_in_diseases_associated_with_sensitivity_to_DNA_damaging_agents	Ataxia_Telangiectasia	TSP Lung(14;0.12)			20	26					0	0	0.001882	0	0
EXPH5	23086	broad.mit.edu	37	11	108380982	108380982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:108380982C>T	uc001pkk.2	-	6	5363	c.5252G>A	c.(5251-5253)AGG>AAG	p.R1751K	EXPH5_uc010rvy.1_Missense_Mutation_p.R1563K|EXPH5_uc010rvz.1_Missense_Mutation_p.R1595K|EXPH5_uc010rwa.1_Missense_Mutation_p.R1675K	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1751					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		AGGGCTCAGCCTCCTCTGATT	0.507													17	17					0	0	0.004007	0	0
EXPH5	23086	broad.mit.edu	37	11	108381835	108381835	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:108381835G>A	uc001pkk.2	-	6	4510	c.4399C>T	c.(4399-4401)CAC>TAC	p.H1467Y	EXPH5_uc010rvy.1_Missense_Mutation_p.H1279Y|EXPH5_uc010rvz.1_Missense_Mutation_p.H1311Y|EXPH5_uc010rwa.1_Missense_Mutation_p.H1391Y	NM_015065	NP_055880	Q8NEV8	EXPH5_HUMAN	exophilin 5 isoform a	1467					intracellular protein transport		Rab GTPase binding			skin(3)|ovary(2)	5		all_cancers(61;3.99e-08)|Acute lymphoblastic leukemia(157;3.97e-05)|Melanoma(852;4.04e-05)|all_epithelial(67;0.000116)|all_hematologic(158;0.000315)|Breast(348;0.104)|all_neural(303;0.16)		Epithelial(105;8.1e-06)|BRCA - Breast invasive adenocarcinoma(274;1.22e-05)|all cancers(92;0.000129)|OV - Ovarian serous cystadenocarcinoma(223;0.11)|Colorectal(284;0.184)		GTGGATGTGTGATCTTTCTGG	0.458													12	1					0	0	0.000978	0	0
ANKK1	255239	broad.mit.edu	37	11	113264443	113264443	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:113264443C>T	uc001pny.2	+	2	520	c.426C>T	c.(424-426)CTC>CTT	p.L142L		NM_178510	NP_848605	Q8NFD2	ANKK1_HUMAN	ankyrin repeat and kinase domain containing 1	142	Protein kinase.						ATP binding|protein serine/threonine kinase activity			lung(5)|stomach(1)|ovary(1)|breast(1)	8		all_cancers(61;1.53e-11)|all_epithelial(67;3e-06)|Melanoma(852;4.04e-05)|all_hematologic(158;0.000315)|Acute lymphoblastic leukemia(157;0.000966)|Breast(348;0.0461)|Medulloblastoma(222;0.0523)|all_neural(223;0.0663)|Prostate(24;0.194)		BRCA - Breast invasive adenocarcinoma(274;4.82e-06)|Epithelial(105;5.41e-05)|all cancers(92;0.000442)|OV - Ovarian serous cystadenocarcinoma(223;0.238)		CGCCTCTGCTCCACCTGGACC	0.567													4	7					0	0	0.000602	0	0
APOA5	116519	broad.mit.edu	37	11	116661143	116661143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:116661143C>T	uc001ppr.2	-	3	810	c.802G>A	c.(802-804)GAA>AAA	p.E268K	ZNF259_uc001ppp.2_5'Flank|ZNF259_uc009yzd.2_5'Flank|ZNF259_uc001ppq.2_5'Flank|APOA5_uc009yze.2_Missense_Mutation_p.E268K|APOA5_uc009yzf.2_Missense_Mutation_p.E268K|APOA5_uc009yzg.2_Missense_Mutation_p.E294K	NM_052968	NP_443200	Q6Q788	APOA5_HUMAN	apolipoprotein AV precursor	268					acylglycerol homeostasis|cholesterol homeostasis|lipid transport|lipoprotein metabolic process|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor-mediated endocytosis|positive regulation of triglyceride catabolic process|positive regulation of very-low-density lipoprotein particle remodeling|tissue regeneration|triglyceride catabolic process|triglyceride homeostasis	chylomicron|high-density lipoprotein particle|very-low-density lipoprotein particle	enzyme binding|heparin binding|lipoprotein lipase activator activity|low-density lipoprotein particle receptor binding|phosphatidylcholine binding				0	all_hematologic(175;0.0487)	all_cancers(61;3.31e-09)|all_epithelial(67;8.03e-06)|Breast(348;0.0126)|Melanoma(852;0.0153)|Acute lymphoblastic leukemia(157;0.0257)|Medulloblastoma(222;0.0425)|all_hematologic(158;0.0433)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;4.93e-06)|all cancers(92;0.000123)|OV - Ovarian serous cystadenocarcinoma(223;0.149)		CCGGCCCCTTCCTCAGTCCCA	0.652													64	3					0	0	0.003610	0	0
DSCAML1	57453	broad.mit.edu	37	11	117351209	117351209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:117351209C>T	uc001prh.1	-	14	2916	c.2914G>A	c.(2914-2916)GAC>AAC	p.D972N		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	912	Extracellular (Potential).|Fibronectin type-III 1.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		CTGTTCCCGTCGAATCGCTGG	0.637													6	1					0	0	0.001168	0	0
DSCAML1	57453	broad.mit.edu	37	11	117352764	117352764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:117352764C>T	uc001prh.1	-	12	2655	c.2653G>A	c.(2653-2655)GGG>AGG	p.G885R		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	825	Extracellular (Potential).|Ig-like C2-type 9.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		ACTGTGTCCCCCTTCTCCCAG	0.627													12	1					0	0	0.001368	0	0
MLL	4297	broad.mit.edu	37	11	118343788	118343788	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:118343788C>T	uc001pta.2	+	3	1937	c.1914C>T	c.(1912-1914)GCC>GCT	p.A638A	MLL_uc001ptb.2_Silent_p.A638A|MLL_uc001psz.1_Silent_p.A671A|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	638					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CAAAGTATGCCAAAGAAGGTC	0.428			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								20	29					0	0	0.001523	0	0
MCAM	4162	broad.mit.edu	37	11	119182819	119182819	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:119182819G>A	uc001pwf.2	-	9	1115	c.1086C>T	c.(1084-1086)ACC>ACT	p.T362T	MCAM_uc001pwg.1_5'Flank	NM_006500	NP_006491	P43121	MUC18_HUMAN	melanoma cell adhesion molecule	362	Ig-like C2-type 2.|Extracellular (Potential).				anatomical structure morphogenesis|cell adhesion	integral to membrane|plasma membrane				ovary(2)|breast(1)|central_nervous_system(1)	4		Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;3.78e-05)		CACAGGTCAGGGTGAGGCTGC	0.637													13	1					0	0	0.001855	0	0
MFRP	83552	broad.mit.edu	37	11	119217037	119217037	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:119217037G>A	uc001pwj.2	-	2	262	c.102C>T	c.(100-102)TGC>TGT	p.C34C	MFRP_uc010rzf.1_RNA|MFRP_uc010rzg.1_Silent_p.C34C	NM_031433	NP_113621	Q9BXJ0	C1QT5_HUMAN	membrane frizzled-related protein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						collagen					0		Medulloblastoma(222;0.0523)|Breast(348;0.174)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;3.84e-05)		CTGGGGGAGGGCAGGGTGGCC	0.637													5	2					0	0	0.000602	0	0
TECTA	7007	broad.mit.edu	37	11	121008498	121008498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:121008498G>A	uc010rzo.1	+	10	3310	c.3310G>A	c.(3310-3312)GGC>AGC	p.G1104S		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor	1104	VWFD 3.				cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		CATCGTCTCAGGCTACGGCCA	0.587													5	6					0	0	0.000602	0	0
SORL1	6653	broad.mit.edu	37	11	121428100	121428100	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:121428100C>T	uc001pxx.2	+	19	2729	c.2649C>T	c.(2647-2649)CTC>CTT	p.L883L		NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	883	Extracellular (Potential).|LDL-receptor class B 2.				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		CTCTGGTCCTCGTGCCCCAAG	0.493													16	19					0	0	0.006122	0	0
OR8D2	283160	broad.mit.edu	37	11	124189215	124189215	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:124189215C>T	uc010sah.1	-	1	879	c.879G>A	c.(877-879)AGG>AGA	p.R293R		NM_001002918	NP_001002918	Q9GZM6	OR8D2_HUMAN	olfactory receptor, family 8, subfamily D,	293	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)|central_nervous_system(1)|pancreas(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0525)		CATCCTTGTTCCTCAGGCTAT	0.428													23	32					0	0	0.002780	0	0
OR8B2	26595	broad.mit.edu	37	11	124253153	124253153	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:124253153G>A	uc010sai.1	-	1	87	c.87C>T	c.(85-87)TTC>TTT	p.F29F	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	29	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		CTAGAAACAGGAAAAAGAGGG	0.413													16	37					0	0	0.004990	0	0
VSIG2	23584	broad.mit.edu	37	11	124618332	124618332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:124618332C>T	uc001qas.2	-	6	881	c.805G>A	c.(805-807)GAG>AAG	p.E269K	VSIG2_uc001qat.2_Missense_Mutation_p.E269K	NM_014312	NP_055127	Q96IQ7	VSIG2_HUMAN	V-set and immunoglobulin domain containing 2	269	Cytoplasmic (Potential).					integral to plasma membrane|membrane fraction				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.215)	Breast(109;0.00663)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0215)		TTCCCCCTCTCTTTCTGGAAC	0.607													29	2					0	0	0.003755	0	0
GLB1L2	89944	broad.mit.edu	37	11	134212737	134212737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:134212737C>T	uc001qhp.2	+	2	364	c.176C>T	c.(175-177)TCC>TTC	p.S59F		NM_138342	NP_612351	Q8IW92	GLBL2_HUMAN	galactosidase, beta 1-like 2 precursor	59					carbohydrate metabolic process	extracellular region	cation binding|hydrolase activity, hydrolyzing O-glycosyl compounds			ovary(1)|pancreas(1)|skin(1)	3	all_hematologic(175;0.127)	all_cancers(12;2.85e-18)|all_epithelial(12;1.21e-12)|all_lung(97;0.000276)|Lung NSC(97;0.000518)|Breast(109;0.00122)|Medulloblastoma(222;0.0399)|all_neural(223;0.0412)|Esophageal squamous(93;0.0844)		Epithelial(10;1.37e-11)|all cancers(11;2.2e-10)|BRCA - Breast invasive adenocarcinoma(10;3.09e-10)|OV - Ovarian serous cystadenocarcinoma(99;0.000885)|Lung(977;0.223)		CTGGAGGATTCCACCTTCTGG	0.612													18	0					0	0	0.006122	0	0
SLC6A12	6539	broad.mit.edu	37	12	307150	307150	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:307150G>T	uc001qhz.2	-	10	1409	c.866C>A	c.(865-867)ACC>AAC	p.T289N	SLC6A12_uc001qhx.2_Intron|SLC6A12_uc001qhy.2_5'UTR|SLC6A12_uc001qia.2_Missense_Mutation_p.T289N|SLC6A12_uc001qib.2_Missense_Mutation_p.T289N|SLC6A12_uc009zdh.1_Missense_Mutation_p.T289N	NM_003044	NP_003035	P48065	S6A12_HUMAN	solute carrier family 6 (neurotransmitter	289					cellular nitrogen compound metabolic process|neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(10;0.0172)|all_epithelial(11;0.0283)|all_lung(10;0.0392)|Lung NSC(10;0.0567)|Ovarian(42;0.142)		OV - Ovarian serous cystadenocarcinoma(31;0.00227)			GAAGATCTGGGTGCCCGCATC	0.587													14	12					1.99824e-07	2.80951e-07	0.004990	1	0
CACNA2D4	93589	broad.mit.edu	37	12	1963203	1963203	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:1963203C>T	uc001qjp.2	-	23	2391	c.2160G>A	c.(2158-2160)GAG>GAA	p.E720E	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Silent_p.E584E|CACNA2D4_uc009zdr.1_RNA	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	720	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		GGACCAGCTCCTCGTCACCTG	0.572													4	12					0	0	0.000248	0	0
GALNT8	26290	broad.mit.edu	37	12	4853837	4853837	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:4853837G>A	uc001qne.1	+	4	923	c.831G>A	c.(829-831)TTG>TTA	p.L277L		NM_017417	NP_059113	Q9NY28	GALT8_HUMAN	polypeptide N-acetylgalactosaminyltransferase 8	277	Lumenal (Potential).|Catalytic subdomain A.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			ovary(2)|pancreas(1)|skin(1)	4						TCGCCATCTTGGATGCTCACA	0.493													10	20					0	0	0.000978	0	0
KCNA6	3742	broad.mit.edu	37	12	4920380	4920380	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:4920380C>T	uc001qng.2	+	1	2039	c.1173C>T	c.(1171-1173)TCC>TCT	p.S391S		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	391	Helical; Name=Segment S5; (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TCCTCTTCTCCAGTGCCGTCT	0.572										HNSCC(72;0.22)			24	27					0	0	0.008361	0	0
Unknown	0	broad.mit.edu	37	12	6547771	6547771	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:6547771G>A	uc001qoa.2	+	1		c.105G>A				NR_003273				Homo sapiens signal recognition particle 14kDa (homologous Alu RNA binding protein) pseudogene 1 (SRP14P1), non-coding RNA.																		TATGATGGTCGAACCAAACCC	0.488													15	13					0	0	0.003163	0	0
CD4	920	broad.mit.edu	37	12	6909577	6909577	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:6909577C>T	uc001qqv.1	+	3	399	c.154C>T	c.(154-156)CAC>TAC	p.H52Y	CD4_uc009zez.1_Intron|CD4_uc009zfa.1_Intron|CD4_uc009zfb.1_Intron|CD4_uc010sfj.1_Intron|CD4_uc009zfc.1_Intron|CD4_uc010sfk.1_Intron|CD4_uc010sfl.1_Intron	NM_000616	NP_000607	P01730	CD4_HUMAN	CD4 antigen precursor	52	Extracellular (Potential).|Ig-like V-type.				cell adhesion|entry into host cell|immune response|induction by virus of host cell-cell fusion|initiation of viral infection|maintenance of protein location in cell|positive regulation of interleukin-2 biosynthetic process|positive regulation of protein kinase activity|protein palmitoleylation|regulation of defense response to virus by virus|T cell costimulation|T cell receptor signaling pathway|T cell selection|transmembrane receptor protein tyrosine kinase signaling pathway	early endosome|endoplasmic reticulum membrane|integral to membrane|T cell receptor complex	coreceptor activity|extracellular matrix structural constituent|glycoprotein binding|MHC class II protein binding|protein homodimerization activity|protein kinase binding|transmembrane receptor activity|zinc ion binding				0		Myeloproliferative disorder(1001;0.0122)				CATACAATTCCACTGGAAAAA	0.498													16	17					0	0	0.004007	0	0
USP5	8078	broad.mit.edu	37	12	6968686	6968686	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:6968686C>T	uc001qri.3	+	9	1170	c.1111C>T	c.(1111-1113)CAG>TAG	p.Q371*	USP5_uc001qrh.3_Nonsense_Mutation_p.Q371*	NM_001098536	NP_001092006	P45974	UBP5_HUMAN	ubiquitin specific peptidase 5 isoform 1	371					positive regulation of proteasomal ubiquitin-dependent protein catabolic process|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process	lysosome	cysteine-type endopeptidase activity|omega peptidase activity|protein binding|ubiquitin thiolesterase activity|zinc ion binding			lung(2)|breast(1)|skin(1)	4						GGACCCTACCCAGGATTTCAG	0.562													16	17					0	0	0.007413	0	0
C1S	716	broad.mit.edu	37	12	7175788	7175788	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:7175788C>T	uc001qsj.2	+	14	1943	c.1224C>T	c.(1222-1224)AGC>AGT	p.S408S	C1S_uc001qsk.2_Silent_p.S408S|C1S_uc001qsl.2_Silent_p.S408S|C1S_uc009zfr.2_Silent_p.S241S|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	408	Sushi 2.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	GTAACGGGAGCTGGGTGAATG	0.582													13	50					0	0	0.003163	0	0
PEX5	5830	broad.mit.edu	37	12	7360659	7360659	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:7360659C>T	uc009zfu.1	+	13	1744	c.1164C>T	c.(1162-1164)GCC>GCT	p.A388A	PEX5_uc001qsw.2_Silent_p.A388A|PEX5_uc010sgc.1_Silent_p.A403A|PEX5_uc001qsu.2_Silent_p.A351A|PEX5_uc010sgd.1_Silent_p.A409A|PEX5_uc001qsv.2_Silent_p.A380A	NM_001131026	NP_001124498	P50542	PEX5_HUMAN	peroxisomal biogenesis factor 5 isoform d	388	TPR 2.				protein import into peroxisome matrix, translocation|protein targeting to peroxisome|protein tetramerization|protein transport	cytosol|peroxisomal matrix|peroxisomal membrane	peroxisome matrix targeting signal-1 binding|protein C-terminus binding|protein N-terminus binding			ovary(1)	1						AACTATTAGCCATCAGTGCAT	0.493													13	19					0	0	0.002450	0	0
SLC2A14	144195	broad.mit.edu	37	12	7966933	7966933	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:7966933C>T	uc001qtk.2	-	16	2335	c.1542G>A	c.(1540-1542)AAG>AAA	p.K514K	SLC2A14_uc001qtl.2_Silent_p.K491K|SLC2A14_uc001qtm.2_Silent_p.K491K|SLC2A14_uc010sgg.1_Silent_p.K405K|SLC2A14_uc001qtn.2_Silent_p.K514K|SLC2A14_uc001qto.2_Silent_p.K149K|SLC2A14_uc010sgh.1_Silent_p.K529K	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	514	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		TGGTGGTCTCCTTAGCAGGCT	0.547													60	20					0	0	0.003610	0	0
SLC2A14	144195	broad.mit.edu	37	12	7966960	7966960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:7966960C>T	uc001qtk.2	-	16	2308	c.1515G>A	c.(1513-1515)ATG>ATA	p.M505I	SLC2A14_uc001qtl.2_Missense_Mutation_p.M482I|SLC2A14_uc001qtm.2_Missense_Mutation_p.M482I|SLC2A14_uc010sgg.1_Missense_Mutation_p.M396I|SLC2A14_uc001qtn.2_Missense_Mutation_p.M505I|SLC2A14_uc001qto.2_Missense_Mutation_p.M140I|SLC2A14_uc010sgh.1_Missense_Mutation_p.M520I	NM_153449	NP_703150	Q8TDB8	GTR14_HUMAN	glucose transporter 14	505	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane	glucose transmembrane transporter activity			ovary(1)	1				Kidney(36;0.0883)		TGTTCATCCCCATGACGCCGT	0.572													22	47					0	0	0.008361	0	0
AICDA	57379	broad.mit.edu	37	12	8757408	8757408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:8757408G>A	uc001qur.2	-	4	617	c.538C>T	c.(538-540)CTT>TTT	p.L180F	AICDA_uc001qup.1_Missense_Mutation_p.L165F|AICDA_uc001quq.1_Intron|AICDA_uc009zgd.1_Intron	NM_020661	NP_065712	Q9GZX7	AICDA_HUMAN	activation-induced cytidine deaminase	180					B cell differentiation|DNA demethylation|mRNA processing|negative regulation of methylation-dependent chromatin silencing	cytoplasm	cytidine deaminase activity|protein binding|zinc ion binding			ovary(1)|pancreas(1)	2	Lung SC(5;0.184)					CTTACCAAAAGGATGCGCCGA	0.388									Immune_Deficiency_with_Hyper-IgM				66	85					0	0	0.003610	0	0
PZP	5858	broad.mit.edu	37	12	9322155	9322155	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:9322155G>A	uc001qvl.2	-	16	1901	c.1872C>T	c.(1870-1872)ACC>ACT	p.T624T	PZP_uc009zgl.2_Silent_p.T493T|PZP_uc010sgo.1_5'Flank|PZP_uc009zgm.1_5'UTR	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						CAGGAAAATTGGTGAGATCCT	0.418													17	21					0	0	0.001882	0	0
CD69	969	broad.mit.edu	37	12	9906184	9906184	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:9906184A>G	uc001qwk.2	-	5	574	c.493T>C	c.(493-495)TTC>CTC	p.F165L		NM_001781	NP_001772	Q07108	CD69_HUMAN	CD69 molecule	165	C-type lectin.|Extracellular (Potential).					integral to plasma membrane	sugar binding|transmembrane receptor activity				0						GTAACGTTGAACCTGTCAAAC	0.353													14	10					0	0	0.003163	0	0
KLRC4	8302	broad.mit.edu	37	12	10560975	10560975	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:10560975C>T	uc001qye.2	-	3	475	c.293G>A	c.(292-294)GGA>GAA	p.G98E	KLRK1_uc001qyc.2_5'Flank|KLRK1_uc009zhk.2_5'UTR|KLRK1_uc001qyd.2_5'UTR	NM_013431	NP_038459	O43908	NKG2F_HUMAN	killer cell lectin-like receptor subfamily C,	98	Extracellular (Potential).				cellular defense response	integral to membrane	binding|receptor activity				0						CTCCAGTACTCCAATACCTAG	0.259													9	34					0	0	0.000978	0	0
PRB2	653247	broad.mit.edu	37	12	11546390	11546390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:11546390C>T	uc010shk.1	-	3	657	c.622G>A	c.(622-624)GGA>AGA	p.G208R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTTGCCTCCTTGTGGGGGT	0.597													37	64					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11546453	11546453	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:11546453C>G	uc010shk.1	-	3	594	c.559G>C	c.(559-561)GGA>CGA	p.G187R		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			TGGTTGCCTCCTTGTGGGGGT	0.602													34	119					0	0	0.003610	0	0
PRB2	653247	broad.mit.edu	37	12	11548455	11548455	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:11548455C>T	uc010shk.1	-	1	44	c.9G>A	c.(7-9)TTG>TTA	p.L3L		NM_006248	NP_006239			proline-rich protein BstNI subfamily 2												0		all_cancers(2;0.00558)|Acute lymphoblastic leukemia(2;3.94e-11)|all_hematologic(2;3.6e-09)	OV - Ovarian serous cystadenocarcinoma(49;0.185)			ACAGCAGAATCAACAGCATCT	0.512													25	25					0	0	0.002836	0	0
GPRC5A	9052	broad.mit.edu	37	12	13061501	13061501	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:13061501C>T	uc001rba.2	+	2	968	c.318C>T	c.(316-318)TCC>TCT	p.S106S	GPRC5A_uc001raz.2_Silent_p.S106S	NM_003979	NP_003970	Q8NFJ5	RAI3_HUMAN	G protein-coupled receptor, family C, group 5,	106	Helical; Name=3; (Potential).					cytoplasmic vesicle membrane|Golgi apparatus|integral to plasma membrane	G-protein coupled receptor activity				0		Prostate(47;0.141)		BRCA - Breast invasive adenocarcinoma(232;0.0708)	Tretinoin(DB00755)	TCCTCTTTTCCATCTGCTTCT	0.592													31	88					0	0	0.003755	0	0
GUCY2C	2984	broad.mit.edu	37	12	14796605	14796605	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:14796605G>A	uc001rcd.2	-	17	1970	c.1833C>T	c.(1831-1833)GTC>GTT	p.V611V		NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	611	Cytoplasmic (Potential).|Protein kinase.				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						GACGACCATGGACTTCTGTCT	0.388													47	46					0	0	0.003610	0	0
WBP11	51729	broad.mit.edu	37	12	14941981	14941981	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:14941981G>A	uc001rci.2	-	11	1557	c.1396C>T	c.(1396-1398)CGA>TGA	p.R466*		NM_016312	NP_057396	Q9Y2W2	WBP11_HUMAN	WW domain binding protein 11	466	Pro-rich.|PGR.				mRNA processing|RNA splicing|rRNA processing	cytoplasm	single-stranded DNA binding|WW domain binding			ovary(1)|lung(1)	2						CCAGGGGGTCGGCCTGGTGGT	0.642													17	16					0	0	0.007413	0	0
C12orf60	144608	broad.mit.edu	37	12	14976469	14976469	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:14976469C>T	uc001rcj.3	+	2	804	c.600C>T	c.(598-600)TCC>TCT	p.S200S		NM_175874	NP_787070	Q5U649	CL060_HUMAN	hypothetical protein LOC144608	200										ovary(1)|central_nervous_system(1)	2						CTGAGGATTCCAAAAATCCCA	0.408													17	18					0	0	0.007413	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18435355	18435355	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:18435355T>C	uc001rdt.2	+	2	456	c.340T>C	c.(340-342)TTA>CTA	p.L114L	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.L114L|PIK3C2G_uc010sic.1_5'UTR	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	114					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TCCTTCTGTGTTACCAAAACC	0.413													52	45					0	0	0.003610	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18552692	18552692	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:18552692G>A	uc001rdt.2	+	15	2219	c.2103G>A	c.(2101-2103)TGG>TGA	p.W701*	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Nonsense_Mutation_p.W742*|PIK3C2G_uc010sic.1_Nonsense_Mutation_p.W520*	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	701					cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity	p.W701C(1)		lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CCCCTGGATGGGATGAAAGGA	0.408													19	32					0	0	0.006122	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18658279	18658279	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:18658279C>T	uc001rdt.2	+	23	3200	c.3084C>T	c.(3082-3084)ATC>ATT	p.I1028I	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Silent_p.I1069I|PIK3C2G_uc010sic.1_Silent_p.I847I	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1028	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				TAACATTCATCCTGGGAGTAT	0.383													8	12					0	0	0.004482	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18716344	18716344	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:18716344G>A	uc001rdt.2	+	27	3807	c.3691G>A	c.(3691-3693)GAA>AAA	p.E1231K	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Missense_Mutation_p.E1272K|PIK3C2G_uc010sic.1_Missense_Mutation_p.E1050K	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1231	PX.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				CAGCAACAACGAAACAAGCCT	0.418													11	11					0	0	0.008291	0	0
CAPZA3	93661	broad.mit.edu	37	12	18891535	18891535	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:18891535G>A	uc001rdy.2	+	1	491	c.333G>A	c.(331-333)CAG>CAA	p.Q111Q	PLCZ1_uc001rdv.3_5'Flank|PLCZ1_uc001rdw.3_5'Flank|PLCZ1_uc010sid.1_5'Flank	NM_033328	NP_201585	Q96KX2	CAZA3_HUMAN	capping protein alpha 3	111					actin cytoskeleton organization|actin filament capping	F-actin capping protein complex	actin binding			ovary(1)|central_nervous_system(1)	2	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.0241)	Hepatocellular(102;0.194)				GTATCATTCAGAATGAGGCAG	0.393													30	35					0	0	0.007291	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20876070	20876070	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:20876070C>T	uc001rej.3	+	10	1423	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F	SLCO1C1_uc010sii.1_Silent_p.F356F|SLCO1C1_uc010sij.1_Silent_p.F307F|SLCO1C1_uc009zip.2_Silent_p.F190F|SLCO1C1_uc001rei.2_Silent_p.F356F|SLCO1C1_uc010sik.1_Silent_p.F238F	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,	356	Helical; Name=7; (Potential).				sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					CAGTATACTTCCTATATTTAT	0.373													30	42					0	0	0.002836	0	0
SLCO1C1	53919	broad.mit.edu	37	12	20890040	20890040	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:20890040G>A	uc001rej.3	+	12	1738	c.1383_splice	c.e12-1	p.G461_splice	SLCO1C1_uc010sii.1_Splice_Site_p.G461_splice|SLCO1C1_uc010sij.1_Splice_Site_p.G412_splice|SLCO1C1_uc009zip.2_Splice_Site_p.G295_splice|SLCO1C1_uc001rei.2_Splice_Site_p.G461_splice|SLCO1C1_uc010sik.1_Splice_Site_p.G343_splice	NM_017435	NP_059131	Q9NYB5	SO1C1_HUMAN	solute carrier organic anion transporter family,						sodium-independent organic anion transport	integral to membrane|plasma membrane	thyroid hormone transmembrane transporter activity			ovary(5)|pancreas(1)|skin(1)	7	Esophageal squamous(101;0.149)					TTTCTTTTCAGAACCAAACCT	0.338													11	38					0	0	0.001368	0	0
ABCC9	10060	broad.mit.edu	37	12	21997802	21997802	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:21997802G>A	uc001rfi.1	-	25	3164	c.3144C>T	c.(3142-3144)TTC>TTT	p.F1048F	ABCC9_uc001rfh.2_Silent_p.F1048F|ABCC9_uc001rfj.1_Silent_p.F1012F	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	1048	Helical; Name=13; (Potential).|ABC transmembrane type-1 2.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAAGGCAAAGGAAAATGCCTG	0.408													20	22					0	0	0.007413	0	0
ABCC9	10060	broad.mit.edu	37	12	22028599	22028599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:22028599C>T	uc001rfi.1	-	15	2101	c.2081G>A	c.(2080-2082)CGA>CAA	p.R694Q	ABCC9_uc001rfh.2_Missense_Mutation_p.R694Q|ABCC9_uc001rfj.1_Missense_Mutation_p.R658Q	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	694	Cytoplasmic (Potential).|ABC transporter 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TGTTGGAATTCGAATATCTAT	0.308													14	48					0	0	0.008871	0	0
CASC1	55259	broad.mit.edu	37	12	25267779	25267779	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:25267779G>A	uc001rgl.2	-	12	1486	c.1404C>T	c.(1402-1404)ATC>ATT	p.I468I	CASC1_uc001rgk.2_Silent_p.I474I|CASC1_uc001rgm.3_Silent_p.I532I|CASC1_uc001rgj.2_Silent_p.I428I|CASC1_uc010sje.1_Silent_p.I409I|CASC1_uc010sjf.1_Silent_p.I356I|CASC1_uc010sjg.1_3'UTR	NM_001082973	NP_001076442	Q6TDU7	CASC1_HUMAN	cancer susceptibility candidate 1 isoform b	468										ovary(2)	2	Acute lymphoblastic leukemia(6;0.00112)|all_hematologic(7;0.00152)|Melanoma(3;0.0301)|Colorectal(261;0.11)		OV - Ovarian serous cystadenocarcinoma(3;7.42e-20)|Epithelial(3;7.58e-16)|all cancers(3;1.07e-13)			ATACATTGCTGATGCCATCAG	0.353													22	25					0	0	0.003330	0	0
C12orf11	55726	broad.mit.edu	37	12	27070630	27070630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:27070630G>A	uc001rhk.3	-	9	1463	c.926C>T	c.(925-927)TCG>TTG	p.S309L	C12orf11_uc001rhj.3_5'UTR|C12orf11_uc010sjk.1_Missense_Mutation_p.S208L	NM_018164	NP_060634	Q9NVM9	M89BB_HUMAN	hypothetical protein LOC55726	309					cell division|mitosis|regulation of mitotic cell cycle		protein binding			large_intestine(1)|ovary(1)|central_nervous_system(1)	3	Colorectal(261;0.0847)					TTCTTTAAACGAGCCTTCTCG	0.279													21	27					0	0	0.002780	0	0
ARNTL2	56938	broad.mit.edu	37	12	27521335	27521335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:27521335G>A	uc001rht.1	+	2	190	c.172G>A	c.(172-174)GAC>AAC	p.D58N	ARNTL2_uc001rhw.2_Missense_Mutation_p.D69N|ARNTL2_uc010sjp.1_Missense_Mutation_p.D69N|ARNTL2_uc001rhu.1_Missense_Mutation_p.D58N|ARNTL2_uc009zji.1_Missense_Mutation_p.D58N|ARNTL2_uc001rhv.1_Missense_Mutation_p.D58N	NM_020183	NP_064568	Q8WYA1	BMAL2_HUMAN	aryl hydrocarbon receptor nuclear	58					circadian rhythm|entrainment of circadian clock|regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(1)|skin(1)	2	Colorectal(261;0.0847)|Lung SC(9;0.184)					AAGTGATTCAGACCCATCCCA	0.433													32	34					0	0	0.003271	0	0
Unknown	0	broad.mit.edu	37	12	31311878	31311878	+	Silent	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:31311878A>G	uc010sjy.1	-	5	552	c.552T>C	c.(550-552)ATT>ATC	p.I184I						RecName: Full=Ovostatin homolog 1; Flags: Precursor;																		TTTTCACAACAATCCAGTAAT	0.373													112	143					0	0	0.003610	0	0
PKP2	5318	broad.mit.edu	37	12	33030932	33030932	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:33030932G>A	uc001rlj.3	-	3	997	c.882C>T	c.(880-882)TCC>TCT	p.S294S	PKP2_uc001rlk.3_Silent_p.S294S|PKP2_uc010skj.1_Silent_p.S294S	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	294					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TGCTGTGGAAGGAGCTCTGAT	0.687													7	22					0	0	0.001984	0	0
PKP2	5318	broad.mit.edu	37	12	33031882	33031882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:33031882G>A	uc001rlj.3	-	2	423	c.308C>T	c.(307-309)CCT>CTT	p.P103L	PKP2_uc001rlk.3_Missense_Mutation_p.P103L|PKP2_uc010skj.1_Missense_Mutation_p.P103L	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	103					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					TTTAGGAACAGGGGAACGGCC	0.383													18	51					0	0	0.001523	0	0
LRRK2	120892	broad.mit.edu	37	12	40687346	40687346	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:40687346G>A	uc001rmg.3	+	21	2811	c.2690_splice	c.e21-1	p.G897_splice	LRRK2_uc001rmh.1_Splice_Site_p.G519_splice|LRRK2_uc009zjw.2_5'Flank	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2						activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				TTTCAAAATAGGAAGTGAAGG	0.323													8	7					0	0	0.003080	0	0
LRRK2	120892	broad.mit.edu	37	12	40745535	40745535	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:40745535G>A	uc001rmg.3	+	44	6697	c.6576G>A	c.(6574-6576)GAG>GAA	p.E2192E	LRRK2_uc009zjw.2_Silent_p.E1030E|LRRK2_uc001rmi.2_Silent_p.E1025E	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	2192					activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				ACACTTCTGAGGTAAATCCAA	0.363													9	18					0	0	0.000978	0	0
CNTN1	1272	broad.mit.edu	37	12	41421698	41421698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:41421698C>T	uc001rmm.1	+	22	2863	c.2750C>T	c.(2749-2751)TCT>TTT	p.S917F	CNTN1_uc001rmn.1_Missense_Mutation_p.S906F	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	917	Fibronectin type-III 4.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				TCAGTAAGGTCTGGTTCACGC	0.393													14	24					0	0	0.004007	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43821151	43821151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:43821151G>A	uc010skx.1	-	27	4067	c.4067C>T	c.(4066-4068)CCA>CTA	p.P1356L	ADAMTS20_uc001rno.1_Missense_Mutation_p.P474L	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1356	TSP type-1 9.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		ACAAGGCCCTGGACCACATTG	0.448													16	35					0	0	0.004990	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43825278	43825278	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:43825278C>T	uc010skx.1	-	22	3118	c.3118G>A	c.(3118-3120)GGA>AGA	p.G1040R	ADAMTS20_uc001rno.1_Missense_Mutation_p.G194R|ADAMTS20_uc001rnp.1_Missense_Mutation_p.G194R	NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1040	TSP type-1 5.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TGCTTTGTTCCTTTACCACAT	0.383													43	87					0	0	0.003610	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45457815	45457815	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:45457815C>T	uc001rol.2	-	1		c.1380G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						TCTGCTGCTTCCATAAAGGCT	0.443													17	42					0	0	0.004990	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45458098	45458098	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:45458098C>T	uc001rol.2	-	1		c.1097G>A				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						GCCAGCATTCCCTCTCCAATC	0.507													14	7					0	0	0.004990	0	0
ARID2	196528	broad.mit.edu	37	12	46246331	46246331	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:46246331C>T	uc001ros.1	+	15	4425	c.4425C>T	c.(4423-4425)ACC>ACT	p.T1475T	ARID2_uc001ror.2_Silent_p.T1475T|ARID2_uc009zkg.1_Silent_p.T931T|ARID2_uc009zkh.1_Silent_p.T1102T|ARID2_uc001rou.1_Silent_p.T809T	NM_152641	NP_689854	Q68CP9	ARID2_HUMAN	AT rich interactive domain 2 (ARID, RFX-like)	1475					chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding|zinc ion binding			ovary(6)|skin(3)|upper_aerodigestive_tract(1)	10	Lung SC(27;0.192)|Renal(347;0.236)	Lung NSC(34;0.106)|all_lung(34;0.22)	OV - Ovarian serous cystadenocarcinoma(5;0.00691)	GBM - Glioblastoma multiforme(48;0.0153)		ATTCTACAACCTCTGTTATAC	0.443													20	46					0	0	0.001523	0	0
COL2A1	1280	broad.mit.edu	37	12	48378799	48378799	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:48378799G>A	uc001rqu.2	-	27	1993	c.1812C>T	c.(1810-1812)TTC>TTT	p.F604F	COL2A1_uc009zkw.2_RNA|COL2A1_uc001rqv.2_Silent_p.F535F	NM_001844	NP_001835	P02458	CO2A1_HUMAN	collagen, type II, alpha 1 isoform 1 precursor	604	Triple-helical region.				axon guidance|collagen fibril organization|embryonic skeletal joint morphogenesis|sensory perception of sound|visual perception	collagen type II	identical protein binding|platelet-derived growth factor binding			ovary(1)|skin(1)	2		Acute lymphoblastic leukemia(13;0.108)|all_hematologic(14;0.214)			Collagenase(DB00048)	TGGGGCCAGGGAAACCCATGA	0.567													11	13					0	0	0.000978	0	0
C12orf41	54934	broad.mit.edu	37	12	49072876	49072876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:49072876C>T	uc001rrx.2	-	4	563	c.488G>A	c.(487-489)AGA>AAA	p.R163K	C12orf41_uc001rrw.2_Intron|C12orf41_uc001rrz.2_Missense_Mutation_p.R346K|C12orf41_uc001rry.2_Intron	NM_017822	NP_060292	Q9H9L4	CL041_HUMAN	hypothetical protein LOC54934	163										ovary(2)	2						AGGGTCACCTCTCCATGTCTG	0.468													8	17					0	0	0.006214	0	0
CCNT1	904	broad.mit.edu	37	12	49087904	49087904	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:49087904G>A	uc001rse.1	-	9	1416	c.1093C>T	c.(1093-1095)CCA>TCA	p.P365S	LOC144438_uc001rsd.3_5'Flank|CCNT1_uc009zkz.1_Missense_Mutation_p.P80S	NM_001240	NP_001231	O60563	CCNT1_HUMAN	cyclin T1	365					cell cycle|cell division|interspecies interaction between organisms|positive regulation of viral transcription|protein phosphorylation|regulation of cyclin-dependent protein kinase activity|regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	DNA binding|protein kinase binding			ovary(3)|lung(1)|breast(1)|skin(1)	6						CCATCCTGTGGTAAGGAATGA	0.448													25	62					0	0	0.004656	0	0
NCKAP5L	57701	broad.mit.edu	37	12	50185643	50185643	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:50185643G>A	uc009zlk.2	-	13	4186	c.3984C>T	c.(3982-3984)TCC>TCT	p.S1328S	NCKAP5L_uc001rvc.3_Silent_p.S532S|NCKAP5L_uc001rvb.2_3'UTR	NM_001037806	NP_001032895	Q9HCH0	NCK5L_HUMAN	NCK-associated protein 5-like	1324										central_nervous_system(1)	1						TCCCACAAGAGGACAGCGAGT	0.687													4	5					0	0	0.000248	0	0
BIN2	51411	broad.mit.edu	37	12	51696470	51696470	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:51696470C>T	uc001ryg.2	-	4	364	c.312G>A	c.(310-312)TGG>TGA	p.W104*	BIN2_uc009zlz.2_Nonsense_Mutation_p.W104*|BIN2_uc001ryh.2_5'UTR|BIN2_uc010sng.1_Nonsense_Mutation_p.W78*	NM_016293	NP_057377	Q9UBW5	BIN2_HUMAN	bridging integrator 2	104	BAR.					cytoplasm	protein binding			ovary(1)	1						CCACTCTTACCCATACGATGG	0.443													35	86					0	0	0.005524	0	0
KRT83	3889	broad.mit.edu	37	12	52714950	52714950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:52714950C>T	uc001saf.2	-	1	233	c.170G>A	c.(169-171)GGG>GAG	p.G57E		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	57	Head.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCGGAAGCCCCCGCACACGCT	0.741													8	9					0	0	0.003080	0	0
KRT84	3890	broad.mit.edu	37	12	52776840	52776840	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:52776840C>T	uc001sah.1	-	3	813	c.765G>A	c.(763-765)GAG>GAA	p.E255E		NM_033045	NP_149034	Q9NSB2	KRT84_HUMAN	keratin, hair, basic, 4	255	Rod.|Coil 1B.					keratin filament	structural constituent of epidermis			skin(1)	1	all_hematologic(5;0.12)			BRCA - Breast invasive adenocarcinoma(357;0.189)		ATACCACTTCCTCTTCATACC	0.498													12	46					0	0	0.003163	0	0
KRT71	112802	broad.mit.edu	37	12	52944001	52944001	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:52944001C>T	uc001sao.2	-	2	538	c.468G>A	c.(466-468)CAG>CAA	p.Q156Q		NM_033448	NP_258259	Q3SY84	K2C71_HUMAN	keratin 71	156	Coil 1A.|Rod.						structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.194)		TCTCCAGTACCTGGTTCTGCT	0.532													14	39					0	0	0.003163	0	0
KRT73	319101	broad.mit.edu	37	12	53005026	53005026	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:53005026G>A	uc001sas.2	-	6	1107	c.1072C>T	c.(1072-1074)CAA>TAA	p.Q358*		NM_175068	NP_778238	Q86Y46	K2C73_HUMAN	keratin 73	358	Rod.|Coil 2.					keratin filament	structural molecule activity			large_intestine(2)|ovary(2)|skin(2)	6				BRCA - Breast invasive adenocarcinoma(357;0.189)		CGCAGTCTTTGGATGAGACGG	0.552													18	22					0	0	0.001523	0	0
KRT1	3848	broad.mit.edu	37	12	53074092	53074092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:53074092C>T	uc001sau.1	-	1	100	c.41G>A	c.(40-42)GGA>GAA	p.G14E	KRT1_uc001sav.1_Missense_Mutation_p.G14E	NM_006121	NP_006112	P04264	K2C1_HUMAN	keratin 1	14	Head.|Gly/Phe/Ser-rich.				complement activation, lectin pathway|epidermis development|fibrinolysis|regulation of angiogenesis|response to oxidative stress	plasma membrane	protein binding|receptor activity|structural constituent of cytoskeleton|sugar binding			ovary(1)|skin(1)	2						GAAGCCCCCTCCACTTCGGTA	0.537													25	31					0	0	0.004656	0	0
KRT8	3856	broad.mit.edu	37	12	53293662	53293662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:53293662G>A	uc001sbd.2	-	5	981	c.878C>T	c.(877-879)GCT>GTT	p.A293V	KRT8_uc009zmj.2_Missense_Mutation_p.A293V|KRT8_uc009zmk.1_Missense_Mutation_p.A321V|KRT8_uc009zml.1_Missense_Mutation_p.A293V|KRT8_uc009zmm.1_Missense_Mutation_p.A293V	NM_002273	NP_002264	P05787	K2C8_HUMAN	keratin 8	293	Necessary for interaction with PNN.|Rod.|Coil 2.				cytoskeleton organization|interspecies interaction between organisms	cytoplasm|keratin filament|nuclear matrix|nucleoplasm	protein binding|structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.108)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GTGCTTCCCAGCCAGGCTCTG	0.577													7	10					0	0	0.003080	0	0
GPR84	53831	broad.mit.edu	37	12	54757412	54757413	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:54757412_54757413GG>AA	uc001sfu.2	-	2	313_314	c.223_224CC>TT	c.(223-225)CCC>TTC	p.P75F		NM_020370	NP_065103	Q9NQS5	GPR84_HUMAN	G protein-coupled receptor 84	75	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			breast(2)	2						CACAGAGAAGGGCTGAAGGAGC	0.579													4	11					0	0	0.004672	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54925581	54925581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:54925581G>A	uc001sgc.3	+	25	2832	c.2753G>A	c.(2752-2754)AGG>AAG	p.R918K	NCKAP1L_uc010sox.1_Missense_Mutation_p.R460K|NCKAP1L_uc010soy.1_Missense_Mutation_p.R868K	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	918					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						CTCAGTTTCAGGGCCATGGCC	0.483													12	24					0	0	0.002450	0	0
PPP1R1A	5502	broad.mit.edu	37	12	54974739	54974740	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:54974739_54974740CC>TT	uc001sgg.2	-	6	669_670	c.498_499GG>AA	c.(496-501)AAGGGA>AAAAGA	p.G167R		NM_006741	NP_006732	Q13522	PPR1A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	167	Interaction with PPP1R15A.				glycogen metabolic process|signal transduction		protein binding|protein serine/threonine phosphatase inhibitor activity				0						GAGTTGGCTCCCTTGGAATCCA	0.51													45	106					0	0	0.004672	0	0
LACRT	90070	broad.mit.edu	37	12	55025624	55025624	+	Splice_Site	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:55025624C>G	uc001sgi.1	-	4	292	c.254_splice	c.e4-1	p.K85_splice		NM_033277	NP_150593	Q9GZZ8	LACRT_HUMAN	lacritin precursor						calcineurin-NFAT signaling pathway|positive regulation of epithelial cell proliferation|positive regulation of NFAT protein import into nucleus|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of secretion|protein localization in Golgi apparatus|tear secretion	extracellular region|stored secretory granule	collagen binding|fibronectin binding|glycoprotein binding|growth factor activity|laminin-1 binding|protein N-terminus binding			central_nervous_system(1)	1						ACTATGGATTCTAATTTTGGA	0.478													26	45					0	0	0.004656	0	0
OR6C1	390321	broad.mit.edu	37	12	55715295	55715296	+	Nonsense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:55715295_55715296GA>AT	uc010spi.1	+	1	912_913	c.912_913GA>AT	c.(910-915)AGGAAG>AGATAG	p.K305*		NM_001005182	NP_001005182	Q96RD1	OR6C1_HUMAN	olfactory receptor, family 6, subfamily C,	305	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)	2						ACATGGCAAGGAAGACTGTATT	0.391													13	35					0	0	0.004672	0	0
OR6C65	403282	broad.mit.edu	37	12	55795197	55795197	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:55795197G>A	uc010spl.1	+	1	885	c.885G>A	c.(883-885)GTG>GTA	p.V295V		NM_001005518	NP_001005518	A6NJZ3	O6C65_HUMAN	olfactory receptor, family 6, subfamily C,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACCAGCAGGTGAAACAGGCCC	0.358													13	25					0	0	0.001855	0	0
OR10P1	121130	broad.mit.edu	37	12	56030906	56030906	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:56030906C>T	uc010spq.1	+	1	231	c.231C>T	c.(229-231)ATC>ATT	p.I77I		NM_206899	NP_996782	Q8NGE3	O10P1_HUMAN	olfactory receptor, family 10, subfamily P,	77	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)|pancreas(1)	2						CCACTGACATCGTGCCCAGGA	0.592													26	10					0	0	0.003954	0	0
MYL6B	140465	broad.mit.edu	37	12	56548888	56548888	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:56548888C>T	uc001sjs.2	+	4	379	c.252C>T	c.(250-252)ATC>ATT	p.I84I	MYL6B_uc009zoo.2_Silent_p.I84I|MYL6B_uc001sjt.2_Silent_p.I84I|MYL6B_uc001sju.1_Silent_p.I84I	NM_002475	NP_002466	P14649	MYL6B_HUMAN	smooth muscle and non-muscle myosin alkali light	84	EF-hand 1.				muscle filament sliding|skeletal muscle tissue development	cytosol|muscle myosin complex|unconventional myosin complex	calcium ion binding|motor activity|protein binding|structural constituent of muscle				0			OV - Ovarian serous cystadenocarcinoma(18;0.0979)			ATGGCAAGATCCTGTACAGCC	0.577													42	50					0	0	0.002522	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625336	56625336	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:56625336C>T	uc010sqj.1	+	4	535	c.278C>T	c.(277-279)TCC>TTC	p.S93F	SLC39A5_uc010sqi.1_5'UTR|SLC39A5_uc010sqk.1_Missense_Mutation_p.S93F	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	93	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						GCAGACAATTCCACACACAGG	0.632													15	27					0	0	0.004007	0	0
CTDSP2	10106	broad.mit.edu	37	12	58221362	58221362	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:58221362G>A	uc001sqm.2	-	3	754	c.225C>T	c.(223-225)CTC>CTT	p.L75L	CTDSP2_uc009zqf.2_5'UTR|CTDSP2_uc009zqg.2_Intron|uc001sqn.2_5'Flank|MIR26A2_hsa-mir-26a-2|MI0000750_5'Flank	NM_005730	NP_005721	O14595	CTDS2_HUMAN	nuclear LIM interactor-interacting factor 2	75					protein dephosphorylation	nucleus|soluble fraction	CTD phosphatase activity|metal ion binding			central_nervous_system(1)	1	all_neural(12;0.00559)|Glioma(12;0.0143)|Melanoma(17;0.122)					GGAGACACTGGAGCAGATCCG	0.572													7	7					0	0	0.004482	0	0
FAM19A2	338811	broad.mit.edu	37	12	62261101	62261101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:62261101C>T	uc001sqw.2	-	2	1619	c.106G>A	c.(106-108)GCT>ACT	p.A36T	FAM19A2_uc001sqx.2_Missense_Mutation_p.A36T|FAM19A2_uc001sqy.2_RNA	NM_178539	NP_848634	Q8N3H0	F19A2_HUMAN	family with sequence similarity 19 (chemokine	36						cytoplasm				ovary(1)	1			GBM - Glioblastoma multiforme(1;0.00484)	GBM - Glioblastoma multiforme(3;0.02)		AAAAGCTTACCTTTATGATGG	0.333													23	46					0	0	0.005443	0	0
BEST3	144453	broad.mit.edu	37	12	70087463	70087463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:70087463C>T	uc001svg.2	-	4	699	c.472G>A	c.(472-474)GTT>ATT	p.V158I	BEST3_uc001svd.1_Missense_Mutation_p.V158I|BEST3_uc001sve.1_RNA|BEST3_uc010stm.1_Missense_Mutation_p.V52I|BEST3_uc001svh.2_Intron|BEST3_uc001svi.1_RNA	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	158	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			CCTGCTTCAACCACGTGGTCC	0.463													9	17					0	0	0.004482	0	0
TPH2	121278	broad.mit.edu	37	12	72338091	72338092	+	Missense_Mutation	DNP	GG	AA	AA	rs146967917	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:72338091_72338092GG>AA	uc009zrw.1	+	3	414_415	c.273_274GG>AA	c.(271-276)ATGGTT>ATAATT	p.91_92MV>II	TPH2_uc001swy.2_Missense_Mutation_p.1_2MV>II	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	91_92	ACT.				aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	GTGTCAACATGGTTCATATTGA	0.406													25	12					0	0	0.004672	0	0
TPH2	121278	broad.mit.edu	37	12	72338465	72338465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:72338465C>T	uc009zrw.1	+	4	680	c.539C>T	c.(538-540)CCA>CTA	p.P180L	TPH2_uc001swy.2_Missense_Mutation_p.P90L	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	180					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	GCTGACCACCCAGTAAGTGTC	0.468													35	24					0	0	0.004878	0	0
TPH2	121278	broad.mit.edu	37	12	72425098	72425098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:72425098G>A	uc009zrw.1	+	10	1366	c.1225G>A	c.(1225-1227)GAA>AAA	p.E409K	TPH2_uc001swy.2_Missense_Mutation_p.E319K	NM_173353	NP_775489	Q8IWU9	TPH2_HUMAN	tryptophan hydroxylase 2	409					aromatic amino acid family metabolic process|hormone biosynthetic process|serotonin biosynthetic process	cytosol	amino acid binding|iron ion binding|tryptophan 5-monooxygenase activity			ovary(2)|central_nervous_system(1)|skin(1)	4					L-Tryptophan(DB00150)	TTGCTTACAGGAATGCCTTAT	0.403													20	66					0	0	0.008871	0	0
NAV3	89795	broad.mit.edu	37	12	78582399	78582399	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:78582399T>C	uc001syp.2	+	33	6070	c.5897T>C	c.(5896-5898)TTC>TCC	p.F1966S	NAV3_uc001syo.2_Missense_Mutation_p.F1944S|NAV3_uc010sub.1_Missense_Mutation_p.F1423S|NAV3_uc009zsf.2_Missense_Mutation_p.F775S	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1966						nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						GAATATGTATTCCGAATTGAT	0.378										HNSCC(70;0.22)			23	40					0	0	0.004656	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85554410	85554410	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:85554410C>T	uc001tac.2	+	24	4851	c.4740C>T	c.(4738-4740)GCC>GCT	p.A1580A		NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	1580										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TGCGTCTAGCCTTATTCAAAA	0.353													33	17					0	0	0.004289	0	0
CEP290	80184	broad.mit.edu	37	12	88487599	88487599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:88487599G>A	uc001tar.2	-	28	3601	c.3257C>T	c.(3256-3258)TCG>TTG	p.S1086L	CEP290_uc001taq.2_Missense_Mutation_p.S146L|CEP290_uc001tat.2_Missense_Mutation_p.S879L	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	1086	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						TTGCTTTAACGAAGTCCGTAA	0.303													17	14					0	0	0.004007	0	0
KERA	11081	broad.mit.edu	37	12	91445206	91445206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:91445206G>A	uc001tbl.2	-	3	1595	c.976C>T	c.(976-978)CGT>TGT	p.R326C		NM_007035	NP_008966	O60938	KERA_HUMAN	keratocan precursor	326					response to stimulus|visual perception	proteinaceous extracellular matrix				skin(1)	1						CCATCCAGACGGAGGTAGCGA	0.443													16	20					0	0	0.004990	0	0
TMCC3	57458	broad.mit.edu	37	12	94976051	94976051	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:94976051G>A	uc001tdj.2	-	2	460	c.342C>T	c.(340-342)GTC>GTT	p.V114V	TMCC3_uc001tdi.2_Silent_p.V83V	NM_020698	NP_065749	Q9ULS5	TMCC3_HUMAN	transmembrane and coiled-coil domain family 3	114	Potential.					integral to membrane				ovary(1)|skin(1)	2						TCTTCTCAAAGACTTGCTTGA	0.468													28	30					0	0	0.004656	0	0
ANO4	121601	broad.mit.edu	37	12	101381342	101381342	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:101381342C>T	uc010svm.1	+	8	1200	c.628C>T	c.(628-630)CGG>TGG	p.R210W	ANO4_uc010svl.1_RNA|ANO4_uc001thw.2_Missense_Mutation_p.R175W|ANO4_uc001thx.2_Missense_Mutation_p.R210W	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	210	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAGCAGGTTTCGGAGATGGTT	0.507										HNSCC(74;0.22)	OREG0022059	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	49	142					0	0	0.003610	0	0
ANO4	121601	broad.mit.edu	37	12	101520720	101520720	+	Silent	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:101520720A>C	uc010svm.1	+	27	3312	c.2740A>C	c.(2740-2742)AGG>CGG	p.R914R	ANO4_uc001thw.2_Silent_p.R879R|ANO4_uc001thx.2_Silent_p.R914R|ANO4_uc001thy.2_Silent_p.R434R	NM_178826	NP_849148	Q32M45	ANO4_HUMAN	anoctamin 4	914	Extracellular (Potential).					chloride channel complex	chloride channel activity			ovary(4)|skin(2)	6						AAAAGACCTAAGGGATCGAAT	0.438										HNSCC(74;0.22)			13	16					0	0	0.002450	0	0
SLC5A8	160728	broad.mit.edu	37	12	101555850	101555850	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:101555850G>A	uc001thz.3	-	13	1922	c.1532C>T	c.(1531-1533)CCA>CTA	p.P511L		NM_145913	NP_666018	Q8N695	SC5A8_HUMAN	solute carrier family 5 (iodide transporter),	511	Extracellular (Potential).				apoptosis|sodium ion transport	apical plasma membrane|integral to membrane	monocarboxylic acid transmembrane transporter activity|passive transmembrane transporter activity|symporter activity				0						ATCCATCAGTGGAGTCCTAAG	0.378													82	28					0	0	0.003610	0	0
PMCH	5367	broad.mit.edu	37	12	102591410	102591410	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:102591410C>T	uc001tjl.2	-	1	205	c.139G>A	c.(139-141)GGC>AGC	p.G47S		NM_002674	NP_002665	P20382	MCH_HUMAN	pro-melanin-concentrating hormone	47					cell differentiation|neuropeptide signaling pathway|spermatogenesis|synaptic transmission		melanin-concentrating hormone activity				0						TTCTGAAAGCCTTTCCCCAAC	0.343													27	16					0	0	0.006320	0	0
C12orf42	374470	broad.mit.edu	37	12	103762703	103762703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:103762703G>A	uc001tjt.2	-	4	309	c.221C>T	c.(220-222)TCT>TTT	p.S74F	C12orf42_uc001tjs.2_RNA|C12orf42_uc009zuf.1_Missense_Mutation_p.S74F|C12orf42_uc001tju.2_5'UTR	NM_198521	NP_940923	Q96LP6	CL042_HUMAN	hypothetical protein LOC374470	74										ovary(1)|central_nervous_system(1)	2						AAATTTAGGAGATTCAGAGAA	0.363													10	5					0	0	0.001368	0	0
ALDH1L2	160428	broad.mit.edu	37	12	105454852	105454852	+	Splice_Site	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:105454852T>C	uc001tlc.2	-	9	1175	c.1048_splice	c.e9-1	p.V350_splice	ALDH1L2_uc009zuo.2_Splice_Site|ALDH1L2_uc009zup.2_Splice_Site	NM_001034173	NP_001029345	Q3SY69	AL1L2_HUMAN	aldehyde dehydrogenase 1 family, member L2						10-formyltetrahydrofolate catabolic process|biosynthetic process	mitochondrion	acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity|phosphopantetheine binding			skin(1)	1						CCAGATGACCTACACAAAAAG	0.299													8	17					0	0	0.003080	0	0
POLR3B	55703	broad.mit.edu	37	12	106903233	106903233	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:106903233C>T	uc001tlp.2	+	28	3530	c.3308C>T	c.(3307-3309)TCC>TTC	p.S1103F	POLR3B_uc001tlq.2_Missense_Mutation_p.S1045F	NM_018082	NP_060552	Q9NW08	RPC2_HUMAN	DNA-directed RNA polymerase III B isoform 1	1103					innate immune response|positive regulation of innate immune response|positive regulation of interferon-beta production|response to virus|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase III promoter	nucleoplasm	DNA binding|DNA-directed RNA polymerase activity|metal ion binding|ribonucleoside binding			ovary(1)|central_nervous_system(1)	2						CACGTGTCTTCCCTCCGTATT	0.493													11	45					0	0	0.000978	0	0
WSCD2	9671	broad.mit.edu	37	12	108589878	108589878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:108589878G>A	uc001tms.2	+	2	1013	c.269G>A	c.(268-270)GGA>GAA	p.G90E	WSCD2_uc001tmt.2_Missense_Mutation_p.G90E	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	90						integral to membrane				ovary(1)|large_intestine(1)|breast(1)	3						CGCAGGTACGGACCCTGGTTC	0.612													18	36					0	0	0.007413	0	0
CMKLR1	1240	broad.mit.edu	37	12	108686645	108686645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:108686645G>A	uc009zuw.2	-	3	286	c.95C>T	c.(94-96)TCC>TTC	p.S32F	CMKLR1_uc001tmw.2_Missense_Mutation_p.S32F|CMKLR1_uc001tmv.2_Missense_Mutation_p.S30F|CMKLR1_uc009zuv.2_Missense_Mutation_p.S32F	NM_001142345	NP_001135817	Q99788	CML1_HUMAN	chemokine-like receptor 1 isoform a	32	Extracellular (Potential).				chemotaxis|immune response|negative regulation of interleukin-12 production|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage chemotaxis|regulation of calcium-mediated signaling|skeletal system development	integral to plasma membrane	chemokine receptor activity			lung(3)|ovary(1)|pancreas(1)	5						TTCCAAGGGGGATAAGTCCTC	0.488													9	17					0	0	0.004482	0	0
DAO	1610	broad.mit.edu	37	12	109278948	109278948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:109278948C>T	uc001tnr.3	+	2	319	c.166C>T	c.(166-168)CTT>TTT	p.L56F	DAO_uc001tnq.3_Missense_Mutation_p.L56F|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	56					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						GCAGCCCTACCTTTCTGACCC	0.617													34	26					0	0	0.002522	0	0
CCDC63	160762	broad.mit.edu	37	12	111318964	111318964	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:111318964G>A	uc001trv.1	+	7	912	c.717G>A	c.(715-717)AAG>AAA	p.K239K	CCDC63_uc009zvt.1_Missense_Mutation_p.E94K|CCDC63_uc010sye.1_Silent_p.K199K|CCDC63_uc001trw.1_Silent_p.K154K	NM_152591	NP_689804	Q8NA47	CCD63_HUMAN	coiled-coil domain containing 63	239	Potential.									skin(6)|ovary(1)|pancreas(1)	8						ACCGCCAGAAGAAGGACACCT	0.562													6	16					0	0	0.001168	0	0
PTPN11	5781	broad.mit.edu	37	12	112910775	112910775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:112910775C>T	uc001ttx.2	+	7	1164	c.784C>T	c.(784-786)CTC>TTC	p.L262F	PTPN11_uc001ttw.1_Missense_Mutation_p.L262F	NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	262	Tyrosine-protein phosphatase.				axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						GTGCAAACTTCTCTACAGCCG	0.343			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				38	96					0	0	0.008740	0	0
PTPN11	5781	broad.mit.edu	37	12	112926270	112926270	+	Missense_Mutation	SNP	C	T	T	rs121918457		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:112926270C>T	uc001ttx.2	+	12	1783	c.1403C>T	c.(1402-1404)ACG>ATG	p.T468M		NM_002834	NP_002825	Q06124	PTN11_HUMAN	protein tyrosine phosphatase, non-receptor type	472	Tyrosine-protein phosphatase.		T -> M (in LEOPARD1).		axon guidance|cell junction assembly|ephrin receptor signaling pathway|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|interferon-gamma-mediated signaling pathway|leukocyte migration|platelet activation|regulation of cell adhesion mediated by integrin|regulation of interferon-gamma-mediated signaling pathway|regulation of type I interferon-mediated signaling pathway|T cell costimulation|type I interferon-mediated signaling pathway	cytosol	non-membrane spanning protein tyrosine phosphatase activity|protein binding			haematopoietic_and_lymphoid_tissue(375)|lung(6)|autonomic_ganglia(2)|soft_tissue(2)|central_nervous_system(2)|large_intestine(1)|skin(1)|ovary(1)|NS(1)|kidney(1)	392						CGGACAGGGACGTTCATTGTG	0.443			Mis		JMML|AML|MDS		Noonan Syndrome		Noonan_syndrome				33	25					0	0	0.006999	0	0
TBX3	6926	broad.mit.edu	37	12	115117417	115117417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:115117417G>A	uc001tvt.1	-	4	1721	c.757C>T	c.(757-759)CAC>TAC	p.H253Y	TBX3_uc001tvu.1_Missense_Mutation_p.H233Y	NM_016569	NP_057653	O15119	TBX3_HUMAN	T-box 3 protein isoform 2	253	T-box; second part.				anterior/posterior axis specification, embryo|anti-apoptosis|cell aging|embryonic arm morphogenesis|embryonic digit morphogenesis|female genitalia development|follicle-stimulating hormone secretion|luteinizing hormone secretion|male genitalia development|mesoderm morphogenesis|negative regulation of myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle|positive regulation of cell proliferation|regulation of transcription from RNA polymerase II promoter|skeletal system development	nucleus	sequence-specific DNA binding			ovary(2)|skin(1)	3	Medulloblastoma(191;0.163)|all_neural(191;0.178)			BRCA - Breast invasive adenocarcinoma(302;0.0574)		CTTACAATGTGGAACCGGGGC	0.443													34	65					0	0	0.005524	0	0
MAP1LC3B2	643246	broad.mit.edu	37	12	117013857	117013857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:117013857G>A	uc009zwk.1	+	2	264	c.110G>A	c.(109-111)CGA>CAA	p.R37Q		NM_001085481	NP_001078950	A6NCE7	MP3B2_HUMAN	microtubule-associated protein 1 light chain 3	37					autophagy	autophagic vacuole membrane|cytoplasmic vesicle|endomembrane system|microtubule					0						ATAATAGAACGATACAAGGGT	0.458													30	64					0	0	0.002096	0	0
CCDC60	160777	broad.mit.edu	37	12	119968833	119968833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:119968833G>A	uc001txe.2	+	13	1981	c.1516G>A	c.(1516-1518)GAA>AAA	p.E506K	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	506										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GAGGATTTGGGAACTGTGCTC	0.502													10	31					0	0	0.008291	0	0
CIT	11113	broad.mit.edu	37	12	120241103	120241103	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:120241103G>A	uc001txi.1	-	10	1255	c.1202C>T	c.(1201-1203)CCG>CTG	p.P401L	CIT_uc001txh.1_5'UTR|CIT_uc001txj.1_Missense_Mutation_p.P401L	NM_007174	NP_009105	O14578	CTRO_HUMAN	citron	401	AGC-kinase C-terminal.				intracellular signal transduction		ATP binding|metal ion binding|protein serine/threonine kinase activity|SH3 domain binding|small GTPase regulator activity			ovary(6)|urinary_tract(1)|lung(1)|breast(1)|skin(1)	10	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)	Myeloproliferative disorder(1001;0.0255)		BRCA - Breast invasive adenocarcinoma(302;0.211)		CAGCTGGCACGGAGAGGATGA	0.527													47	38					0	0	0.003610	0	0
ANAPC5	51433	broad.mit.edu	37	12	121756141	121756141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:121756141G>A	uc001uag.2	-	15	1954	c.1832C>T	c.(1831-1833)TCC>TTC	p.S611F	ANAPC5_uc010szu.1_Missense_Mutation_p.S277F|ANAPC5_uc001uae.2_Missense_Mutation_p.S175F|ANAPC5_uc010szv.1_Missense_Mutation_p.S213F|ANAPC5_uc001uaf.2_RNA|ANAPC5_uc001uah.2_Missense_Mutation_p.S499F|ANAPC5_uc001uai.1_Missense_Mutation_p.P189S	NM_016237	NP_057321	Q9UJX4	APC5_HUMAN	anaphase-promoting complex subunit 5 isoform a	611	TPR 3.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			skin(3)|breast(2)|kidney(1)	6	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					GTACTCCTTGGAGAGGGCCAG	0.537													219	254					0	0	0.003610	0	0
KDM2B	84678	broad.mit.edu	37	12	121878617	121878617	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:121878617A>C	uc001uat.2	-	21	3714	c.3610_splice	c.e21+1	p.G1204_splice	KDM2B_uc001uaq.2_Splice_Site_p.G644_splice|KDM2B_uc010szy.1_Splice_Site_p.G644_splice|KDM2B_uc001uar.2_Splice_Site_p.G795_splice|KDM2B_uc001uas.2_Splice_Site_p.G1135_splice|KDM2B_uc001uau.2_Intron|KDM2B_uc001uao.2_Splice_Site_p.G452_splice|KDM2B_uc010szx.1_Splice_Site_p.G452_splice|KDM2B_uc001uap.2_Splice_Site	NM_032590	NP_115979	Q8NHM5	KDM2B_HUMAN	F-box and leucine-rich repeat protein 10 isoform						embryonic camera-type eye morphogenesis|fourth ventricle development|histone H2A monoubiquitination|initiation of neural tube closure|lateral ventricle development|midbrain development|midbrain-hindbrain boundary morphogenesis|negative regulation of neural precursor cell proliferation|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|spermatogenesis|third ventricle development|transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-K36 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|rRNA binding|zinc ion binding			ovary(1)|skin(1)	2						CTGGCAACTCACCTGGCCTGT	0.607													11	14					0	0	0.002450	0	0
VPS33A	65082	broad.mit.edu	37	12	122735567	122735567	+	Missense_Mutation	SNP	G	A	A	rs150571876		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:122735567G>A	uc001ucd.2	-	5	676	c.563C>T	c.(562-564)ACG>ATG	p.T188M	VPS33A_uc001ucc.2_Intron	NM_022916	NP_075067	Q96AX1	VP33A_HUMAN	vacuolar protein sorting 33A	188					lysosome localization|melanosome localization|platelet formation|protein transport|regulation of developmental pigmentation|vesicle docking involved in exocytosis	early endosome|late endosome membrane|lysosomal membrane|perinuclear region of cytoplasm	protein binding			skin(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000336)|Epithelial(86;0.000606)|BRCA - Breast invasive adenocarcinoma(302;0.23)		CTGGGGGATCGTTCCATACAG	0.572													16	23					0	0	0.004007	0	0
SBNO1	55206	broad.mit.edu	37	12	123801828	123801828	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:123801828G>C	uc010tap.1	-	20	2875	c.2875C>G	c.(2875-2877)CGA>GGA	p.R959G	SBNO1_uc010tao.1_Missense_Mutation_p.R958G|SBNO1_uc010taq.1_Intron|SBNO1_uc001ues.1_5'Flank	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	959							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		TGAACTCTTCGCCTTTGATTT	0.368													15	56					0	0	0.003163	0	0
SBNO1	55206	broad.mit.edu	37	12	123810811	123810811	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:123810811G>A	uc010tap.1	-	13	1763	c.1763C>T	c.(1762-1764)TCC>TTC	p.S588F	SBNO1_uc010tao.1_Missense_Mutation_p.S587F|SBNO1_uc010taq.1_Intron|SBNO1_uc001uet.2_Missense_Mutation_p.S588F|SBNO1_uc001ueu.2_Missense_Mutation_p.S587F|SBNO1_uc001uev.2_Missense_Mutation_p.S586F|SBNO1_uc009zxy.1_Missense_Mutation_p.S553F	NM_018183	NP_060653	A3KN83	SBNO1_HUMAN	sno, strawberry notch homolog 1	588							ATP binding|DNA binding|hydrolase activity			breast(5)|skin(2)|ovary(1)|kidney(1)	9	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000701)|Epithelial(86;0.00197)		ACCCCACATGGACTTCTTCAT	0.453													34	137					0	0	0.004289	0	0
DNAH10	196385	broad.mit.edu	37	12	124285948	124285948	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:124285948G>A	uc001uft.3	+	15	2254	c.2229G>A	c.(2227-2229)TCG>TCA	p.S743S	DNAH10_uc010tav.1_Silent_p.S285S|DNAH10_uc010taw.1_Silent_p.S228S	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	743	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		TGTTTAGGTCGGGATATAAGA	0.408													14	65					0	0	0.003163	0	0
DNAH10	196385	broad.mit.edu	37	12	124399040	124399040	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:124399040C>T	uc001uft.3	+	60	10188	c.10163C>T	c.(10162-10164)CCC>CTC	p.P3388L		NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3388					microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		CGGGAGATCCCCCTGAGCCAG	0.592													4	16					0	0	0.001168	0	0
DNAH10	196385	broad.mit.edu	37	12	124409633	124409633	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:124409633C>T	uc001uft.3	+	67	11474	c.11449C>T	c.(11449-11451)CCC>TCC	p.P3817S	DNAH10_uc001ufu.3_5'UTR	NM_207437	NP_997320	Q8IVF4	DYH10_HUMAN	dynein, axonemal, heavy chain 10	3817	TPR 4.				microtubule-based movement	cilium axoneme|cytoplasm|dynein complex|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(3)|skin(2)|central_nervous_system(1)	6	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000207)|Epithelial(86;0.000556)|all cancers(50;0.00346)		GTTTCCCGTCCCCTTGGGTTA	0.473													13	18					0	0	0.001855	0	0
NCOR2	9612	broad.mit.edu	37	12	124821437	124821437	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:124821437G>C	uc010tay.1	-	40	6163	c.6007C>G	c.(6007-6009)CGC>GGC	p.R2003G	NCOR2_uc010taz.1_Missense_Mutation_p.R1987G|NCOR2_uc010tax.1_Missense_Mutation_p.R114G	NM_006312	NP_006303	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 1	2004					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		GCAGGGGTGCGGGCGATGGTG	0.731													3	6					0	0	0.004672	0	0
NCOR2	9612	broad.mit.edu	37	12	124824629	124824629	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:124824629C>T	uc010tay.1	-	39	5796	c.5640G>A	c.(5638-5640)CAG>CAA	p.Q1880Q	NCOR2_uc010taz.1_Silent_p.Q1864Q|NCOR2_uc010tax.1_5'UTR	NM_006312	NP_006303	Q9Y618	NCOR2_HUMAN	nuclear receptor co-repressor 2 isoform 1	1881					cellular lipid metabolic process|negative regulation of transcription from RNA polymerase II promoter|regulation of cellular ketone metabolic process by negative regulation of transcription from an RNA polymerase II promoter|transcription, DNA-dependent	nuclear body|nucleus|transcriptional repressor complex	DNA binding|histone deacetylase binding|Notch binding|protein N-terminus binding|transcription corepressor activity			skin(3)|ovary(1)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.163)			Epithelial(86;3.99e-05)|OV - Ovarian serous cystadenocarcinoma(86;9.14e-05)|all cancers(50;0.000402)|BRCA - Breast invasive adenocarcinoma(302;0.0764)		CACTGGGTCTCTGCTGGAGGG	0.527													10	35					0	0	0.001368	0	0
TMEM132B	114795	broad.mit.edu	37	12	126137106	126137106	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:126137106G>A	uc001uhe.1	+	8	2027	c.2019G>A	c.(2017-2019)CAG>CAA	p.Q673Q	TMEM132B_uc001uhf.1_Silent_p.Q185Q	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	673	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		TCTCCCTGCAGCCACACCGAG	0.607													21	25					0	0	0.002780	0	0
RIMBP2	23504	broad.mit.edu	37	12	130927162	130927162	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:130927162G>A	uc001uil.2	-	8	848	c.684C>T	c.(682-684)TTC>TTT	p.F228F	RIMBP2_uc001uim.2_Silent_p.F136F|RIMBP2_uc001uin.1_5'UTR	NM_015347	NP_056162	O15034	RIMB2_HUMAN	RIM-binding protein 2	228	SH3 1.					cell junction|synapse				upper_aerodigestive_tract(3)|ovary(3)|large_intestine(2)|central_nervous_system(2)|pancreas(1)	11	all_neural(191;0.101)|Medulloblastoma(191;0.163)	all_epithelial(31;0.213)		OV - Ovarian serous cystadenocarcinoma(86;4.29e-06)|all cancers(50;4.56e-05)|Epithelial(86;5.41e-05)		CAAAGTCCACGAAGTTGGAGG	0.602													9	17					0	0	0.006214	0	0
PUS1	80324	broad.mit.edu	37	12	132426450	132426450	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:132426450C>T	uc001ujf.2	+	5	1637	c.1158C>T	c.(1156-1158)TCC>TCT	p.S386S	PUS1_uc001ujg.2_Silent_p.S358S|PUS1_uc001ujh.2_Silent_p.S358S|PUS1_uc001uji.2_Silent_p.S333S	NM_025215	NP_079491	Q9Y606	TRUA_HUMAN	pseudouridine synthase 1 isoform 1	386						mitochondrion	pseudouridine synthase activity|pseudouridylate synthase activity|RNA binding			breast(1)|central_nervous_system(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.05e-08)|Epithelial(86;2.51e-07)|all cancers(50;2.94e-07)		ACGAACGCTCCATGGCCCAGT	0.642													8	16					0	0	0.003080	0	0
PUS1	80324	broad.mit.edu	37	12	132428095	132428095	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:132428095C>T	uc001ujf.2	+	6	1727	c.1248C>T	c.(1246-1248)CCC>CCT	p.P416P	PUS1_uc001ujg.2_Silent_p.P388P|PUS1_uc001ujh.2_Silent_p.P388P|PUS1_uc001uji.2_Silent_p.P363P	NM_025215	NP_079491	Q9Y606	TRUA_HUMAN	pseudouridine synthase 1 isoform 1	416						mitochondrion	pseudouridine synthase activity|pseudouridylate synthase activity|RNA binding			breast(1)|central_nervous_system(1)	2	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;2.05e-08)|Epithelial(86;2.51e-07)|all cancers(50;2.94e-07)		TGCCCAGTCCCCTGGAAGGCA	0.607													8	43					0	0	0.006214	0	0
POLE	5426	broad.mit.edu	37	12	133237728	133237728	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr12:133237728C>G	uc001uks.1	-	25	2931	c.2887G>C	c.(2887-2889)GGT>CGT	p.G963R	POLE_uc001ukr.1_5'Flank|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Missense_Mutation_p.G936R	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	963					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GCCAGAGAACCGTCTTCATTG	0.532								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					54	54					0	0	0.003610	0	0
LOC284232	284232	broad.mit.edu	37	13	19412884	19412884	+	RNA	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:19412884T>C	uc010tcj.1	-	1		c.33226A>G				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCAATATCTGTCTTCAAAATG	0.269													4	177					0	0	0.000602	0	0
LOC284232	284232	broad.mit.edu	37	13	19413025	19413025	+	RNA	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:19413025A>G	uc010tcj.1	-	1		c.33085T>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AATAACCTGCACATCCATGCA	0.299													4	37					0	0	0.000248	0	0
LOC284232	284232	broad.mit.edu	37	13	19413033	19413033	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:19413033G>A	uc010tcj.1	-	1		c.33077C>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						GCACATCCATGCACTAAAAAG	0.294													5	31					0	0	0.000602	0	0
LOC284232	284232	broad.mit.edu	37	13	19425764	19425764	+	RNA	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:19425764T>G	uc010tcj.1	-	1		c.20346A>C				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						AAATTTATTGTTATTCAAATA	0.269													4	12					0	0	0.000248	0	0
TUBA3C	7278	broad.mit.edu	37	13	19752424	19752424	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:19752424C>T	uc009zzj.2	-	3	386	c.337G>A	c.(337-339)GAG>AAG	p.E113K		NM_006001	NP_005992	Q13748	TBA3C_HUMAN	tubulin, alpha 3c	113					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|protein binding|structural molecule activity			ovary(3)|skin(2)	5		all_cancers(29;1.31e-20)|all_epithelial(30;1.59e-20)|all_lung(29;6.91e-20)|Lung NSC(5;9.25e-17)|Hepatocellular(1;0.0207)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;6.78e-06)|Epithelial(112;3.79e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00172)|Lung(94;0.0186)|LUSC - Lung squamous cell carcinoma(192;0.108)		TCGACGATCTCCTTGCCGATG	0.532													52	70					0	0	0.003610	0	0
TPTE2	93492	broad.mit.edu	37	13	19997285	19997285	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:19997285C>T	uc001umd.2	-	21	1697	c.1486G>A	c.(1486-1488)GAA>AAA	p.E496K	TPTE2_uc009zzk.2_RNA|TPTE2_uc009zzl.2_Missense_Mutation_p.E385K|TPTE2_uc001ume.2_Missense_Mutation_p.E419K|TPTE2_uc009zzm.2_Missense_Mutation_p.E167K|TPTE2_uc010tcm.1_RNA|TPTE2_uc010tcl.1_Missense_Mutation_p.E167K	NM_199254	NP_954863	Q6XPS3	TPTE2_HUMAN	TPTE and PTEN homologous inositol lipid	496	C2 tensin-type.					endoplasmic reticulum membrane|integral to membrane	ion channel activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity				0		all_cancers(29;1.23e-20)|all_lung(29;1.97e-20)|all_epithelial(30;5.86e-20)|Lung NSC(5;3.36e-17)|Lung SC(185;0.0262)|Ovarian(182;0.162)		all cancers(112;1.73e-05)|Epithelial(112;7.42e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000785)|Lung(94;0.0176)|LUSC - Lung squamous cell carcinoma(192;0.089)		TTATCCAATTCATTTCTTGGT	0.368													13	38					0	0	0.001368	0	0
SACS	26278	broad.mit.edu	37	13	23913172	23913172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:23913172G>A	uc001uon.2	-	10	5432	c.4843C>T	c.(4843-4845)CCT>TCT	p.P1615S	SACS_uc001uoo.2_Missense_Mutation_p.P1468S|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	1615					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		AACTGATTAGGAAATTTTCTA	0.343													26	31					0	0	0.003954	0	0
RNF17	56163	broad.mit.edu	37	13	25374598	25374599	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:25374598_25374599AC>TT	uc001upr.2	+	13	1725_1726	c.1684_1685AC>TT	c.(1684-1686)ACT>TTT	p.T562F	RNF17_uc010tdd.1_Missense_Mutation_p.T421F|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Missense_Mutation_p.T562F|RNF17_uc001ups.2_Missense_Mutation_p.T501F	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	562					multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		TGAACCATATACTGAAGGGCTG	0.381													33	32					0	0	0.004672	0	0
PAN3	255967	broad.mit.edu	37	13	28830518	28830519	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:28830518_28830519CC>TT	uc001urz.2	+	6	660_661	c.652_653CC>TT	c.(652-654)CCA>TTA	p.P218L	PAN3_uc010tdo.1_Missense_Mutation_p.P364L|PAN3_uc001ury.2_Missense_Mutation_p.P52L|PAN3_uc001urx.2_Missense_Mutation_p.P164L	NM_175854	NP_787050	Q58A45	PAN3_HUMAN	PABP1-dependent poly A-specific ribonuclease	364	Interaction with polyadenylate-binding protein.				nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening	centrosome|cytosol	ATP binding|protein kinase activity			ovary(1)	1	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)	Colorectal(13;0.000334)	all cancers(112;0.0102)|Epithelial(112;0.0803)|GBM - Glioblastoma multiforme(144;0.121)|OV - Ovarian serous cystadenocarcinoma(117;0.13)|Lung(94;0.174)		AAGTCACACTCCAAATCCAGCA	0.46													47	58					0	0	0.004672	0	0
RXFP2	122042	broad.mit.edu	37	13	32367143	32367143	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:32367143G>A	uc001utt.2	+	16	1775	c.1704G>A	c.(1702-1704)GGG>GGA	p.G568G	RXFP2_uc010aba.2_Silent_p.G527G	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	568	Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		ACTTTTATGGGAAAAATGGAG	0.343													12	30					0	0	0.000978	0	0
N4BP2L2	10443	broad.mit.edu	37	13	33110923	33110923	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:33110923G>A	uc001uuk.3	-	2	420	c.242C>T	c.(241-243)CCT>CTT	p.P81L	N4BP2L2_uc010abe.1_Intron|N4BP2L2_uc010tdz.1_Intron|N4BP2L2_uc001uul.1_Missense_Mutation_p.P81L|N4BP2L2_uc001uum.2_5'Flank	NM_014887	NP_055702	Q92802	N42L2_HUMAN	phosphonoformate immuno-associated protein 5	81											0		Lung SC(185;0.0262)		all cancers(112;9.5e-07)|Epithelial(112;5.07e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.00196)|BRCA - Breast invasive adenocarcinoma(63;0.00438)|GBM - Glioblastoma multiforme(144;0.243)		ATCATGCAAAGGTCTATGCAA	0.408													62	64					0	0	0.003610	0	0
STARD13	90627	broad.mit.edu	37	13	33681014	33681014	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:33681014C>T	uc001uuw.2	-	13	3231	c.3105G>A	c.(3103-3105)GAG>GAA	p.E1035E	STARD13_uc001uuu.2_Silent_p.E1027E|STARD13_uc001uuv.2_Silent_p.E917E|STARD13_uc001uux.2_Silent_p.E1000E|STARD13_uc010tec.1_RNA	NM_178006	NP_821074	Q9Y3M8	STA13_HUMAN	StAR-related lipid transfer (START) domain	1035	START.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|lipid particle|mitochondrial membrane	GTPase activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4	all_epithelial(80;0.155)	Lung SC(185;0.0367)		all cancers(112;1.31e-05)|Epithelial(112;0.000142)|BRCA - Breast invasive adenocarcinoma(63;0.00936)|OV - Ovarian serous cystadenocarcinoma(117;0.0533)|Lung(94;0.143)|GBM - Glioblastoma multiforme(144;0.143)		CTTCCTCATGCTCCACGGAGA	0.537													36	37					0	0	0.003755	0	0
NBEA	26960	broad.mit.edu	37	13	35615185	35615185	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:35615185G>A	uc001uvb.2	+	3	616	c.410G>A	c.(409-411)TGG>TAG	p.W137*		NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	137						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		GCAGAAATATGGAGCATGTTT	0.383													63	56					0	0	0.003610	0	0
NBEA	26960	broad.mit.edu	37	13	35758160	35758160	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:35758160C>T	uc001uvb.2	+	30	5085	c.4879C>T	c.(4879-4881)CTT>TTT	p.L1627F	NBEA_uc010abi.2_Intron	NM_015678	NP_056493	Q8NFP9	NBEA_HUMAN	neurobeachin	1627						cytosol|endomembrane system|plasma membrane|trans-Golgi network	protein binding			ovary(9)|large_intestine(2)	11		Breast(139;0.0141)|Lung SC(185;0.0548)|Prostate(109;0.207)		all cancers(112;1.93e-08)|Epithelial(112;1.62e-07)|BRCA - Breast invasive adenocarcinoma(63;0.00033)|OV - Ovarian serous cystadenocarcinoma(117;0.00109)|KIRC - Kidney renal clear cell carcinoma(186;0.00575)|Kidney(163;0.00656)|GBM - Glioblastoma multiforme(144;0.191)|Lung(94;0.199)		CCATGGATTCCTTGCCAAGTT	0.413													12	29					0	0	0.002450	0	0
SMAD9	4093	broad.mit.edu	37	13	37453718	37453718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:37453718C>T	uc001uvw.2	-	2	452	c.109G>A	c.(109-111)GCA>ACA	p.A37T	SMAD9_uc001uvx.2_Missense_Mutation_p.A37T|SMAD9_uc010tep.1_5'UTR	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	37	MH1.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GAGTCCACTGCCTTCTCTGCC	0.572													13	53					0	0	0.004007	0	0
SMAD9	4093	broad.mit.edu	37	13	37453736	37453736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:37453736C>T	uc001uvw.2	-	2	434	c.91G>A	c.(91-93)GAA>AAA	p.E31K	SMAD9_uc001uvx.2_Missense_Mutation_p.E31K|SMAD9_uc010tep.1_5'UTR	NM_001127217	NP_001120689	O15198	SMAD9_HUMAN	SMAD family member 9 isoform a	31	MH1.				BMP signaling pathway|transforming growth factor beta receptor signaling pathway	cytosol|transcription factor complex	sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity				0		Breast(139;0.0615)|Lung SC(185;0.0743)|Prostate(109;0.184)		all cancers(112;3.38e-07)|Epithelial(112;1.93e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00804)|BRCA - Breast invasive adenocarcinoma(63;0.0129)|GBM - Glioblastoma multiforme(144;0.026)		GCCCACTTTTCCTCTTCATCT	0.567													16	46					0	0	0.004990	0	0
TRPC4	7223	broad.mit.edu	37	13	38211283	38211283	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:38211283C>T	uc001uws.2	-	11	2926	c.2691G>A	c.(2689-2691)CTG>CTA	p.L897L	TRPC4_uc010abv.2_Silent_p.L477L|TRPC4_uc001uwt.2_Silent_p.L813L|TRPC4_uc010tey.1_Silent_p.L756L|TRPC4_uc010abw.2_Silent_p.L724L|TRPC4_uc010abx.2_Silent_p.L902L|TRPC4_uc010aby.2_Silent_p.L748L	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	897	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		CGGGAATGCTCAGGTCACCCC	0.468													25	28					0	0	0.005443	0	0
TRPC4	7223	broad.mit.edu	37	13	38211564	38211564	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:38211564G>A	uc001uws.2	-	11	2645	c.2410C>T	c.(2410-2412)CAT>TAT	p.H804Y	TRPC4_uc010abv.2_Missense_Mutation_p.H384Y|TRPC4_uc001uwt.2_Intron|TRPC4_uc010tey.1_Intron|TRPC4_uc010abw.2_Missense_Mutation_p.H631Y|TRPC4_uc010abx.2_Missense_Mutation_p.H809Y|TRPC4_uc010aby.2_Intron	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	804	Binds to ITPR1, ITPR2 and ITPR3.|Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GATCTCGGATGAATCAGGGTG	0.448													39	39					0	0	0.006230	0	0
TRPC4	7223	broad.mit.edu	37	13	38320325	38320325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:38320325G>A	uc001uws.2	-	3	881	c.646C>T	c.(646-648)CCT>TCT	p.P216S	TRPC4_uc010abv.2_5'UTR|TRPC4_uc001uwt.2_Missense_Mutation_p.P216S|TRPC4_uc010tey.1_Missense_Mutation_p.P216S|TRPC4_uc010abw.2_Intron|TRPC4_uc010abx.2_Missense_Mutation_p.P216S|TRPC4_uc010aby.2_Missense_Mutation_p.P216S	NM_016179	NP_057263	Q9UBN4	TRPC4_HUMAN	transient receptor potential cation channel,	216	Cytoplasmic (Potential).				axon guidance|calcium ion import	basolateral plasma membrane|calcium channel complex|cell surface|cortical cytoskeleton	beta-catenin binding|cadherin binding|store-operated calcium channel activity			ovary(3)|skin(2)|breast(1)	6				all cancers(112;1.92e-08)|Epithelial(112;5.04e-06)|OV - Ovarian serous cystadenocarcinoma(117;0.000677)|GBM - Glioblastoma multiforme(144;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0126)		GTGAGAAAAGGATCTTCGCTT	0.498													14	49					0	0	0.001855	0	0
KIAA0564	23078	broad.mit.edu	37	13	42179406	42179406	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:42179406C>T	uc001uyj.2	-	40	4954	c.4884G>A	c.(4882-4884)AAG>AAA	p.K1628K		NM_015058	NP_055873	A3KMH1	K0564_HUMAN	hypothetical protein LOC23078 isoform a	1628						extracellular region	ATP binding|ATPase activity			ovary(3)|upper_aerodigestive_tract(1)|kidney(1)|skin(1)	6		Lung NSC(96;4.61e-06)|Prostate(109;0.0167)|Lung SC(185;0.0262)|Breast(139;0.0854)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000368)|GBM - Glioblastoma multiforme(144;0.0033)|BRCA - Breast invasive adenocarcinoma(63;0.0969)		TTTGGATCTCCTTTAGCCTGA	0.423													15	63					0	0	0.002450	0	0
LOC220429	220429	broad.mit.edu	37	13	50464858	50464858	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:50464858G>A	uc001vdk.2	+	1	314	c.132G>A	c.(130-132)GTG>GTA	p.V44V		NR_003268				Homo sapiens CTAGE family, member 5 pseudogene, mRNA (cDNA clone IMAGE:5270026).												0						GGGAATTGGTGATATGTGCAG	0.507													9	10					0	0	0.004482	0	0
FAM124A	220108	broad.mit.edu	37	13	51825613	51825613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:51825613C>T	uc001vfg.1	+	3	241	c.110C>T	c.(109-111)TCC>TTC	p.S37F	FAM124A_uc001vfe.2_Missense_Mutation_p.S37F|FAM124A_uc001vff.1_Missense_Mutation_p.S73F	NM_145019	NP_659456	Q86V42	F124A_HUMAN	hypothetical protein LOC220108	37										central_nervous_system(1)	1		Acute lymphoblastic leukemia(7;0.000334)|Breast(56;0.00156)|Prostate(109;0.00538)|Lung NSC(96;0.0216)|Hepatocellular(98;0.152)|Glioma(44;0.236)		GBM - Glioblastoma multiforme(99;4.25e-07)		GGTGAGCTTTCCGTTGAAGAG	0.522													5	46					0	0	0.001168	0	0
TPTE2P3	220115	broad.mit.edu	37	13	53096902	53096902	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:53096902G>A	uc001vgw.2	+	11		c.1279G>A				NR_002793				Homo sapiens TPTE and PTEN homologous inositol lipid phosphatase pseudogene, mRNA (cDNA clone IMAGE:5298506), with apparent retained intron.												0						TTTTCTCATGGATGTTCTTCT	0.279													19	17					0	0	0.003330	0	0
MYCBP2	23077	broad.mit.edu	37	13	77661649	77661649	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:77661649T>C	uc001vkf.2	-	63	10822	c.10731A>G	c.(10729-10731)GAA>GAG	p.E3577E	MYCBP2_uc010aev.2_Silent_p.E2981E|MYCBP2_uc001vke.2_Silent_p.E197E	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	3577					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		TTGTTTTATTTTCTTCATCCT	0.353													7	8					0	0	0.004482	0	0
SCEL	8796	broad.mit.edu	37	13	78130781	78130781	+	Missense_Mutation	SNP	G	A	A	rs142444600	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:78130781G>A	uc001vki.2	+	3	264	c.94G>A	c.(94-96)GAG>AAG	p.E32K	SCEL_uc001vkj.2_Missense_Mutation_p.E32K|SCEL_uc010thx.1_Missense_Mutation_p.E32K	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	32					embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		GGATTTTCACGAGGTGAACAA	0.448													39	126					0	0	0.004289	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454777	84454777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:84454777G>A	uc001vlk.2	-	1	1752	c.866C>T	c.(865-867)CCT>CTT	p.P289L		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	289	Extracellular (Potential).					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		TGTCTTGAAAGGAGTTGGCAG	0.537													14	31					0	0	0.002450	0	0
SLITRK6	84189	broad.mit.edu	37	13	86370584	86370584	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:86370584G>A	uc001vll.1	-	2	519	c.60C>T	c.(58-60)TCC>TCT	p.S20S	SLITRK6_uc010afe.1_5'Flank	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	20						integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		CTGGAGTTTGGGAGTGTAAAG	0.383													15	33					0	0	0.002450	0	0
ABCC4	10257	broad.mit.edu	37	13	95816740	95816740	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:95816740C>T	uc001vmd.3	-	16	2186	c.2067G>A	c.(2065-2067)GAG>GAA	p.E689E	ABCC4_uc010afk.2_Intron|ABCC4_uc001vme.2_Silent_p.E689E|ABCC4_uc010tih.1_Silent_p.E614E	NM_005845	NP_005836	O15439	MRP4_HUMAN	ATP-binding cassette, sub-family C, member 4	689					platelet activation|platelet degranulation	integral to membrane|membrane fraction|plasma membrane|platelet dense granule membrane	15-hydroxyprostaglandin dehydrogenase (NAD+) activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|chloride channel activity			central_nervous_system(3)|skin(1)	4	all_neural(89;0.0878)|Medulloblastoma(90;0.163)				Cefazolin(DB01327)	CAGAACGGTTCTCCTCTGATA	0.383													11	15					0	0	0.000978	0	0
DOCK9	23348	broad.mit.edu	37	13	99607748	99607748	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:99607748T>C	uc001vnt.2	-	2	242	c.187A>G	c.(187-189)ACT>GCT	p.T63A	DOCK9_uc001vnw.2_Missense_Mutation_p.T62A|DOCK9_uc001vnv.1_RNA|DOCK9_uc010tir.1_Missense_Mutation_p.T63A|DOCK9_uc010tis.1_Missense_Mutation_p.T62A|DOCK9_uc010tit.1_Missense_Mutation_p.T63A	NM_015296	NP_056111	Q9BZ29	DOCK9_HUMAN	dedicator of cytokinesis 9 isoform a	63					blood coagulation	cytosol|endomembrane system|membrane	GTP binding|GTPase binding|guanyl-nucleotide exchange factor activity			central_nervous_system(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					AGGATCTGAGTCTTCTTCTGG	0.438													7	7					0	0	0.003080	0	0
PCCA	5095	broad.mit.edu	37	13	100861600	100861600	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:100861600C>T	uc001voo.2	+	7	521	c.483C>T	c.(481-483)GTC>GTT	p.V161V	PCCA_uc010aga.2_Silent_p.V135V|PCCA_uc010tiz.1_Silent_p.V161V	NM_000282	NP_000273	P05165	PCCA_HUMAN	propionyl-Coenzyme A carboxylase, alpha	161	Biotin carboxylation.				fatty acid beta-oxidation	mitochondrial matrix	ATP binding|biotin binding|biotin carboxylase activity|enzyme binding|metal ion binding|propionyl-CoA carboxylase activity			skin(2)	2	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Biotin(DB00121)	CAGAAGATGTCGTTTTCATTG	0.383													45	58					0	0	0.003610	0	0
COL4A1	1282	broad.mit.edu	37	13	110823043	110823043	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:110823043C>T	uc001vqw.3	-	42	3715	c.3593G>A	c.(3592-3594)GGG>GAG	p.G1198E	COL4A1_uc010agl.2_Intron	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	1198	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			TCCTGGGCTCCCGGCTAATCC	0.577													19	27					0	0	0.003954	0	0
OR4M1	441670	broad.mit.edu	37	14	20248889	20248889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:20248889G>A	uc010tku.1	+	1	408	c.408G>A	c.(406-408)ATG>ATA	p.M136I		NM_001005500	NP_001005500	Q8NGD0	OR4M1_HUMAN	olfactory receptor, family 4, subfamily M,	136	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTACCATCATGAATCGACGTC	0.502													48	175					0	0	0.003610	0	0
OR4N2	390429	broad.mit.edu	37	14	20295728	20295728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:20295728G>A	uc010tkv.1	+	1	121	c.121G>A	c.(121-123)GGA>AGA	p.G41R		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CATCCTCCCTGGAAATTTTCT	0.443													52	229					0	0	0.003610	0	0
OR4N2	390429	broad.mit.edu	37	14	20295843	20295843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:20295843C>T	uc010tkv.1	+	1	236	c.236C>T	c.(235-237)CCC>CTC	p.P79L		NM_001004723	NP_001004723	Q8NGD1	OR4N2_HUMAN	olfactory receptor, family 4, subfamily N,	79	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		ATTGTGGCTCCCCGGATGTTG	0.517													36	195					0	0	0.007835	0	0
OR4K5	79317	broad.mit.edu	37	14	20388834	20388835	+	Nonsense_Mutation	DNP	CC	TT	TT	rs144511665	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:20388834_20388835CC>TT	uc010tkw.1	+	1	69_70	c.69_70CC>TT	c.(67-72)CTCCAG>CTTTAG	p.Q24*		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	24	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		CTCAAAAACTCCAGCTTTTCTA	0.406													13	83					0	0	0.004672	0	0
OR4K15	81127	broad.mit.edu	37	14	20444368	20444368	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:20444368T>C	uc010tkx.1	+	1	691	c.691T>C	c.(691-693)TCT>CCT	p.S231P		NM_001005486	NP_001005486	Q8NH41	OR4KF_HUMAN	olfactory receptor, family 4, subfamily K,	231	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;3.58e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TGGCTTTCTTTCTCTGAGTTC	0.448													57	64					0	0	0.003610	0	0
OR4K13	390433	broad.mit.edu	37	14	20502702	20502702	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:20502702G>A	uc010tkz.1	-	1	216	c.216C>T	c.(214-216)ATC>ATT	p.I72I		NM_001004714	NP_001004714	Q8NH42	OR4KD_HUMAN	olfactory receptor, family 4, subfamily K,	72	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	all_cancers(95;0.00108)		Epithelial(56;4.65e-07)|all cancers(55;2.9e-06)	GBM - Glioblastoma multiforme(265;0.0064)		AAGAAGCCAGGATCATATCAA	0.443													17	45					0	0	0.006122	0	0
OR11H4	390442	broad.mit.edu	37	14	20711059	20711059	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:20711059C>T	uc010tld.1	+	1	109	c.109C>T	c.(109-111)CTC>TTC	p.L37F		NM_001004479	NP_001004479	Q8NGC9	O11H4_HUMAN	olfactory receptor, family 11, subfamily H,	37	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_cancers(95;0.000888)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0146)		TCAGATTTTCCTCTTCTCATT	0.443													7	29					0	0	0.001984	0	0
SLC39A2	29986	broad.mit.edu	37	14	21469567	21469567	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:21469567G>A	uc001vyr.2	+	4	946	c.759G>A	c.(757-759)GGG>GGA	p.G253G	SLC39A2_uc001vys.2_Silent_p.G154G	NM_014579	NP_055394	Q9NP94	S39A2_HUMAN	solute carrier family 39 (zinc transporter),	253	Extracellular (Potential).					cytoplasmic membrane-bounded vesicle|integral to plasma membrane	zinc ion transmembrane transporter activity			ovary(2)|central_nervous_system(1)	3	all_cancers(95;0.00267)		OV - Ovarian serous cystadenocarcinoma(11;1.34e-10)|Epithelial(56;1.57e-08)|all cancers(55;7.45e-08)	GBM - Glioblastoma multiforme(265;0.0187)		CTGAAGGAGGGCGGGGCTTAG	0.572													29	34					0	0	0.007291	0	0
CHD8	57680	broad.mit.edu	37	14	21870115	21870115	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:21870115C>T	uc001was.1	-	20	3319	c.3225_splice	c.e20+1	p.K1075_splice	CHD8_uc001war.1_Splice_Site_p.K971_splice|CHD8_uc001wav.1_Splice_Site_p.K517_splice	NM_020920	NP_065971	Q9HCK8	CHD8_HUMAN	chromodomain helicase DNA binding protein 8						ATP-dependent chromatin remodeling|canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|negative regulation of Wnt receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	MLL1 complex	ATP binding|beta-catenin binding|DNA binding|DNA helicase activity|DNA-dependent ATPase activity|methylated histone residue binding|p53 binding			ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|breast(1)|skin(1)	10	all_cancers(95;0.00121)		Epithelial(56;2.55e-06)|all cancers(55;1.73e-05)	GBM - Glioblastoma multiforme(265;0.00424)		ACAGAACATGCCTTAGCAAAG	0.343													27	94					0	0	0.007291	0	0
PRMT5	10419	broad.mit.edu	37	14	23395485	23395486	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:23395485_23395486GG>AA	uc001whm.1	-	7	724_725	c.633_634CC>TT	c.(631-636)GACCTC>GATTTC	p.L212F	PRMT5_uc001whl.1_Missense_Mutation_p.L195F|PRMT5_uc010akd.1_RNA|PRMT5_uc010tnf.1_Missense_Mutation_p.L106F|PRMT5_uc010tng.1_Missense_Mutation_p.L151F|PRMT5_uc010tnh.1_Missense_Mutation_p.L168F|PRMT5_uc001whn.1_Intron	NM_006109	NP_006100	O14744	ANM5_HUMAN	protein arginine methyltransferase 5 isoform a	212					cell proliferation|histone H4-R3 methylation|ncRNA metabolic process|regulation of mitosis|spliceosomal snRNP assembly|transcription, DNA-dependent	cytosol|nucleus	histone-arginine N-methyltransferase activity|protein binding|protein-arginine omega-N symmetric methyltransferase activity|ribonucleoprotein binding			ovary(1)	1	all_cancers(95;2.76e-05)			GBM - Glioblastoma multiforme(265;0.0126)		TTAGATGGGAGGTCAGCCCCAA	0.47													34	48					0	0	0.004672	0	0
CDH24	64403	broad.mit.edu	37	14	23517611	23517611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:23517611C>T	uc001wil.2	-	13	2298	c.2038G>A	c.(2038-2040)GAG>AAG	p.E680K	CDH24_uc001wik.3_RNA|CDH24_uc010akf.2_Missense_Mutation_p.E642K	NM_022478	NP_071923	Q86UP0	CAD24_HUMAN	cadherin-like 24 isoform 1	680	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|cell-cell adhesion|homophilic cell adhesion	cell-cell junction|cell-cell junction|integral to membrane	alpha-catenin binding|beta-catenin binding|calcium ion binding|delta-catenin binding			central_nervous_system(1)	1	all_cancers(95;3.3e-05)			GBM - Glioblastoma multiforme(265;0.00654)		ATGATGTTCTCTCGGACGTCC	0.592													11	58					0	0	0.001368	0	0
MYH7	4625	broad.mit.edu	37	14	23897062	23897062	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:23897062G>A	uc001wjx.2	-	16	1726	c.1620C>T	c.(1618-1620)TTC>TTT	p.F540F		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	540	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		TGGCCTTGGGGAACATGCACT	0.547													23	28					0	0	0.002299	0	0
TGM1	7051	broad.mit.edu	37	14	24730980	24730980	+	Silent	SNP	G	A	A	rs144989372	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:24730980G>A	uc001wod.2	-	3	553	c.429C>T	c.(427-429)CGC>CGT	p.R143R	TGM1_uc010tog.1_Intron	NM_000359	NP_000350	P22735	TGM1_HUMAN	transglutaminase 1	143			R -> H (in LI1).|R -> C (in LI1 and NCIE).		cell envelope organization|keratinization|peptide cross-linking	cornified envelope|intrinsic to membrane	acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(265;0.0186)	L-Glutamine(DB00130)	AAGGCTGCCCGCGGCGCACTA	0.577													40	35					0	0	0.005524	0	0
NYNRIN	57523	broad.mit.edu	37	14	24884876	24884876	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:24884876C>T	uc001wpf.3	+	9	4239	c.3921C>T	c.(3919-3921)TTC>TTT	p.F1307F		NM_025081	NP_079357	Q9P2P1	NYNRI_HUMAN	hypothetical protein LOC57523	1307					DNA integration	integral to membrane	DNA binding			ovary(2)|central_nervous_system(1)	3						TGTCCACGTTCGTCTGCATCC	0.622													46	107					0	0	0.003610	0	0
HECTD1	25831	broad.mit.edu	37	14	31570189	31570189	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:31570189T>A	uc001wrc.1	-	43	8269	c.7780A>T	c.(7780-7782)ATG>TTG	p.M2594L	HECTD1_uc001wra.1_Missense_Mutation_p.M720L|HECTD1_uc001wrb.1_Missense_Mutation_p.M720L	NM_015382	NP_056197	Q9ULT8	HECD1_HUMAN	HECT domain containing 1	2594	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	intracellular	metal ion binding|protein binding|ubiquitin-protein ligase activity			ovary(3)|large_intestine(1)|lung(1)	5	Hepatocellular(127;0.0877)|Breast(36;0.176)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.111)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00617)		CGCTCTCTCATGATCTCCTCG	0.418													36	44					0	0	0.004289	0	0
RALGAPA1	253959	broad.mit.edu	37	14	36244917	36244917	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:36244917G>A	uc001wti.2	-	2	532	c.141C>T	c.(139-141)TTC>TTT	p.F47F	RALGAPA1_uc001wtj.2_Silent_p.F47F|RALGAPA1_uc010tpv.1_Silent_p.F47F|RALGAPA1_uc010tpw.1_Silent_p.F47F	NM_014990	NP_055805	Q6GYQ0	RGPA1_HUMAN	Ral GTPase activating protein, alpha subunit 1	47					activation of Ral GTPase activity	cytosol|mitochondrion|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(3)|breast(1)	4						AATGTTGGTCGAAAAACTGTT	0.264													14	61					0	0	0.002450	0	0
FAM179B	23116	broad.mit.edu	37	14	45537771	45537771	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:45537771A>T	uc001wvv.2	+	17	4944	c.4735A>T	c.(4735-4737)AAC>TAC	p.N1579Y	FAM179B_uc001wvw.2_Missense_Mutation_p.N1632Y|FAM179B_uc010anc.2_RNA	NM_015091	NP_055906	Q9Y4F4	F179B_HUMAN	hypothetical protein LOC23116	1579	HEAT 6.						binding			skin(2)|upper_aerodigestive_tract(1)	3						AATAGTGGATAACAATCTGAA	0.408													25	31					0	0	0.004656	0	0
FANCM	57697	broad.mit.edu	37	14	45636355	45636355	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:45636355C>T	uc001wwd.3	+	11	2090	c.1991C>T	c.(1990-1992)TCC>TTC	p.S664F	FANCM_uc001wwc.2_Missense_Mutation_p.S664F|FANCM_uc010anf.2_Missense_Mutation_p.S638F|FANCM_uc001wwe.3_Missense_Mutation_p.S200F	NM_020937	NP_065988	Q8IYD8	FANCM_HUMAN	Fanconi anemia, complementation group M	664					DNA repair	Fanconi anaemia nuclear complex	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding|nuclease activity|protein binding			ovary(3)|lung(2)|breast(2)	7						TCTATCTTTTCCTATAGGGAT	0.358								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				10	43					0	0	0.008291	0	0
C14orf104	55172	broad.mit.edu	37	14	50092606	50092607	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:50092606_50092607CC>TT	uc001wws.3	-	3	2248_2249	c.2167_2168GG>AA	c.(2167-2169)GGT>AAT	p.G723N	SDCCAG1_uc010anj.1_Intron|C14orf104_uc001wwt.3_Missense_Mutation_p.G675N	NM_018139	NP_060609	Q9NVR5	KTU_HUMAN	kintoun isoform 1	723					axonemal dynein complex assembly|ciliary cell motility|flagellar cell motility	cytoplasm					0	all_epithelial(31;0.0021)|Breast(41;0.0124)					TGTAACTAAACCAAAGCTATCT	0.322									Kartagener_syndrome				21	33					0	0	0.004672	0	0
CDKL1	8814	broad.mit.edu	37	14	50844376	50844376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:50844376G>A	uc010anu.1	-	10	1426	c.1426C>T	c.(1426-1428)CCC>TCC	p.P476S	CDKL1_uc001wxz.2_Intron	NM_004196	NP_004187	Q00532	CDKL1_HUMAN	cyclin-dependent kinase-like 1	Error:Variant_position_missing_in_Q00532_after_alignment						cytoplasm|nucleus	ATP binding|cyclin-dependent protein kinase activity			ovary(1)|stomach(1)	2	all_epithelial(31;0.000746)|Breast(41;0.0102)					GGAGCCCAGGGAGGTGTAGCA	0.318													6	18					0	0	0.001168	0	0
ABHD12B	145447	broad.mit.edu	37	14	51352526	51352526	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:51352526C>T	uc001wys.2	+	7	590	c.575C>T	c.(574-576)ACT>ATT	p.T192I	ABHD12B_uc001wyq.2_Missense_Mutation_p.T85I|ABHD12B_uc001wyr.2_Missense_Mutation_p.T115I|ABHD12B_uc010any.2_Intron	NM_181533	NP_853511	Q7Z5M8	AB12B_HUMAN	abhydrolase domain containing 12B isoform b	192							hydrolase activity			breast(1)	1	all_epithelial(31;0.00481)|Breast(41;0.148)					GAGGGACTGACTACGGATGCC	0.517													20	74					0	0	0.002299	0	0
TRIM9	114088	broad.mit.edu	37	14	51492019	51492019	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:51492019A>C	uc001wyx.3	-	2	1647	c.882T>G	c.(880-882)TTT>TTG	p.F294L	TRIM9_uc001wyy.2_Missense_Mutation_p.F294L|TRIM9_uc001wyz.3_Missense_Mutation_p.F294L	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	294	Potential.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					GCTGTACCAGAAACTCCTTGG	0.552													43	64					0	0	0.003610	0	0
GNG2	54331	broad.mit.edu	37	14	52433367	52433367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:52433367C>T	uc001wzi.2	+	4	707	c.178C>T	c.(178-180)CCG>TCG	p.P60S	GNG2_uc001wzh.2_RNA|GNG2_uc010aoc.1_RNA|GNG2_uc001wzj.2_RNA|GNG2_uc001wzk.2_Missense_Mutation_p.P60S	NM_053064	NP_444292	P59768	GBG2_HUMAN	guanine nucleotide binding protein (G protein),	60					cellular response to glucagon stimulus|energy reserve metabolic process|platelet activation|synaptic transmission	heterotrimeric G-protein complex	protein binding|signal transducer activity				0	all_epithelial(31;0.0659)|Breast(41;0.0684)				Halothane(DB01159)	TTCAGAAAACCCGTTTAGGGA	0.522													21	71					0	0	0.002299	0	0
PTGER2	5732	broad.mit.edu	37	14	52794146	52794146	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:52794146G>A	uc001wzr.2	+	2	1302	c.1051G>A	c.(1051-1053)GAT>AAT	p.D351N		NM_000956	NP_000947	P43116	PE2R2_HUMAN	prostaglandin E receptor 2 (subtype EP2), 53kDa	351	Cytoplasmic (Potential).					integral to plasma membrane	prostaglandin E receptor activity			lung(1)|breast(1)	2	Breast(41;0.0639)|all_epithelial(31;0.0729)				Alprostadil(DB00770)|Iloprost(DB01088)	TACACAGTCAGATGCCAGTAA	0.398													24	43					0	0	0.003954	0	0
OTX2	5015	broad.mit.edu	37	14	57268592	57268592	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:57268592C>T	uc001xcp.2	-	3	902	c.731G>A	c.(730-732)GGA>GAA	p.G244E	OTX2_uc010aou.2_Missense_Mutation_p.G244E|OTX2_uc001xcq.2_Missense_Mutation_p.G252E	NM_172337	NP_758840	P32243	OTX2_HUMAN	orthodenticle homeobox 2 isoform b	244					axon guidance|forebrain development|midbrain development|positive regulation of embryonic development|positive regulation of gastrulation|primitive streak formation|protein complex assembly|regulation of fibroblast growth factor receptor signaling pathway|regulation of smoothened signaling pathway	growth cone|nucleus|protein complex	eukaryotic initiation factor 4E binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding			ovary(1)	1	Medulloblastoma(1;0.00184)|all_neural(1;0.00414)					GCTTGAAGCTCCATATCCCTG	0.502													34	27					0	0	0.006230	0	0
C14orf37	145407	broad.mit.edu	37	14	58605246	58605246	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:58605246G>A	uc001xdc.2	-	2	942	c.831C>T	c.(829-831)TCC>TCT	p.S277S	C14orf37_uc010tro.1_Silent_p.S315S|C14orf37_uc001xdd.2_Silent_p.S277S|C14orf37_uc001xde.2_Silent_p.S277S	NM_001001872	NP_001001872	Q86TY3	CN037_HUMAN	hypothetical protein LOC145407 precursor	277	Extracellular (Potential).					integral to membrane	binding				0						GGGTGTACTCGGAAGTTTCGA	0.552													12	31					0	0	0.000978	0	0
C14orf39	317761	broad.mit.edu	37	14	60928270	60928270	+	Silent	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:60928270T>G	uc001xez.3	-	12	1124	c.1014A>C	c.(1012-1014)TCA>TCC	p.S338S	C14orf39_uc010apo.2_Silent_p.S49S	NM_174978	NP_777638	Q08AQ4	Q08AQ4_HUMAN	hypothetical protein LOC317761	338										ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0448)		TCGTAATATGTGAACATTTTG	0.279													17	27					0	0	0.007413	0	0
SYNE2	23224	broad.mit.edu	37	14	64408603	64408603	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:64408603C>T	uc001xgm.2	+	5	468	c.238C>T	c.(238-240)CCT>TCT	p.P80S	SYNE2_uc001xgk.2_Missense_Mutation_p.P80S|SYNE2_uc001xgl.2_Missense_Mutation_p.P80S	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	80	CH 1.|Cytoplasmic (Potential).|Actin-binding.				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AATTTCACAGCCTCGGGATAA	0.299													28	36					0	0	0.006320	0	0
SYNE2	23224	broad.mit.edu	37	14	64450546	64450546	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:64450546T>A	uc001xgm.2	+	18	2323	c.2093T>A	c.(2092-2094)GTT>GAT	p.V698D	SYNE2_uc001xgl.2_Missense_Mutation_p.V698D	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	698	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AAAGCAACTGTTGAGTTTTCA	0.294													15	13					0	0	0.002450	0	0
SPTB	6710	broad.mit.edu	37	14	65266488	65266488	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:65266488G>A	uc001xht.2	-	8	1095	c.1041C>T	c.(1039-1041)TAC>TAT	p.Y347Y	SPTB_uc001xhr.2_Silent_p.Y347Y|SPTB_uc001xhs.2_Silent_p.Y347Y|SPTB_uc001xhu.2_Silent_p.Y347Y	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	347	Spectrin 1.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		CCACGGTGCGGTAGGTGCTGA	0.612													6	22					0	0	0.001984	0	0
SPTB	6710	broad.mit.edu	37	14	65270481	65270481	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:65270481C>T	uc001xht.2	-	3	372	c.318G>A	c.(316-318)GGG>GGA	p.G106G	SPTB_uc001xhr.2_Silent_p.G106G|SPTB_uc001xhs.2_Silent_p.G106G|SPTB_uc001xhu.2_Silent_p.G106G	NM_000347	NP_000338	P11277	SPTB1_HUMAN	spectrin beta isoform b	106	CH 1.|Actin-binding.				actin filament capping|axon guidance	cell surface|cytosol|intrinsic to internal side of plasma membrane|protein complex|spectrin|spectrin-associated cytoskeleton	actin filament binding|structural constituent of cytoskeleton			ovary(7)|skin(2)|lung(1)|central_nervous_system(1)	11		all_lung(585;4.15e-09)		all cancers(60;4.33e-34)|OV - Ovarian serous cystadenocarcinoma(108;8.32e-20)|BRCA - Breast invasive adenocarcinoma(234;0.0628)		TGCGCATCTTCCCCTTGGTGG	0.607													6	8					0	0	0.001168	0	0
SLC8A3	6547	broad.mit.edu	37	14	70515704	70515704	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:70515704G>A	uc001xly.2	-	7	2941	c.2187C>T	c.(2185-2187)GAC>GAT	p.D729D	SLC8A3_uc001xlu.2_Silent_p.D86D|SLC8A3_uc001xlv.2_Silent_p.D100D|SLC8A3_uc001xlw.2_Silent_p.D726D|SLC8A3_uc001xlx.2_Silent_p.D727D|SLC8A3_uc001xlz.2_Silent_p.D723D|SLC8A3_uc010ara.2_RNA|SLC8A3_uc001xma.2_Silent_p.D86D	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	729	Helical; (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		GCATGACGTAGTCAAAGCAGG	0.572													14	14					0	0	0.002450	0	0
SLC8A3	6547	broad.mit.edu	37	14	70634318	70634318	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:70634318G>A	uc001xly.2	-	2	1576	c.822C>T	c.(820-822)ATC>ATT	p.I274I	SLC8A3_uc001xlw.2_Silent_p.I274I|SLC8A3_uc001xlx.2_Silent_p.I274I|SLC8A3_uc001xlz.2_Silent_p.I274I|SLC8A3_uc010ara.2_RNA	NM_183002	NP_892114	P57103	NAC3_HUMAN	solute carrier family 8 (sodium/calcium	274	Cytoplasmic (Potential).				cell communication|platelet activation	integral to membrane|plasma membrane	calcium:sodium antiporter activity|calmodulin binding			skin(3)|ovary(2)|breast(2)	7				BRCA - Breast invasive adenocarcinoma(234;0.0079)|all cancers(60;0.0102)|OV - Ovarian serous cystadenocarcinoma(108;0.0555)		CTGTCTCTATGATAATTCCTC	0.483													12	33					0	0	0.002450	0	0
SIPA1L1	26037	broad.mit.edu	37	14	72055512	72055512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:72055512G>A	uc001xms.2	+	2	1271	c.923G>A	c.(922-924)GGG>GAG	p.G308E	SIPA1L1_uc001xmt.2_Missense_Mutation_p.G308E|SIPA1L1_uc001xmu.2_Missense_Mutation_p.G308E|SIPA1L1_uc001xmv.2_Missense_Mutation_p.G308E	NM_015556	NP_056371	O43166	SI1L1_HUMAN	signal-induced proliferation-associated 1 like	308					actin cytoskeleton reorganization|activation of Rap GTPase activity|regulation of dendritic spine morphogenesis	cell junction|cytoplasm|dendritic spine|postsynaptic density|postsynaptic membrane|synaptosome	GTPase activator activity			ovary(3)|breast(1)	4				all cancers(60;0.00169)|BRCA - Breast invasive adenocarcinoma(234;0.00912)|OV - Ovarian serous cystadenocarcinoma(108;0.0109)		GAAGAACTTGGGAAGTCATCA	0.413													23	26					0	0	0.001882	0	0
C14orf45	80127	broad.mit.edu	37	14	74500775	74500775	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:74500775C>T	uc010tup.1	+	4	519	c.396C>T	c.(394-396)TTC>TTT	p.F132F	C14orf45_uc001xpm.1_RNA	NM_025057	NP_079333	Q8ND07	CN045_HUMAN	hypothetical protein LOC80127	132	Potential.										0				BRCA - Breast invasive adenocarcinoma(234;0.00351)		AGGGACAGTTCCATCAAAAAG	0.378													11	24					0	0	0.002450	0	0
C14orf115	55237	broad.mit.edu	37	14	74825503	74825503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:74825503G>A	uc001xpw.3	+	2	2208	c.2017G>A	c.(2017-2019)GAG>AAG	p.E673K		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	673					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		CTCCTACAAGGAGTTCAGTGC	0.567													29	19					0	0	0.001786	0	0
KCNK10	54207	broad.mit.edu	37	14	88652148	88652148	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:88652148T>C	uc001xwo.2	-	7	1805	c.1348A>G	c.(1348-1350)ACC>GCC	p.T450A	KCNK10_uc001xwm.2_Missense_Mutation_p.T455A|KCNK10_uc001xwn.2_Missense_Mutation_p.T455A	NM_021161	NP_066984	P57789	KCNKA_HUMAN	potassium channel, subfamily K, member 10	450	Cytoplasmic (Potential).				signal transduction	integral to membrane	potassium channel activity|voltage-gated ion channel activity			ovary(2)|skin(2)|pancreas(1)	5						AGTCTGGAGGTGGACCCGAAC	0.547													42	35					0	0	0.008740	0	0
TRIP11	9321	broad.mit.edu	37	14	92473984	92473984	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:92473984C>G	uc001xzy.2	-	10	2315	c.1527G>C	c.(1525-1527)AAG>AAC	p.K509N	TRIP11_uc010auf.1_Missense_Mutation_p.K245N	NM_004239	NP_004230	Q15643	TRIPB_HUMAN	thyroid hormone receptor interactor 11	509	Potential.				transcription from RNA polymerase II promoter	cytoskeleton|Golgi apparatus|membrane|nucleus	protein binding|transcription coactivator activity			ovary(6)|skin(2)|kidney(2)|central_nervous_system(1)|lung(1)|breast(1)	13				COAD - Colon adenocarcinoma(157;0.223)		ACAGTGTTACCTTTGTAGCTT	0.333			T	PDGFRB	AML								34	44					0	0	0.002445	0	0
KIAA1409	57578	broad.mit.edu	37	14	94044228	94044228	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:94044228A>T	uc001ybv.1	+	15	1804	c.1721A>T	c.(1720-1722)AAT>ATT	p.N574I	KIAA1409_uc001ybs.1_Missense_Mutation_p.N574I	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	751						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GTTCAGCACAATATGCTTAGT	0.458													90	98					0	0	0.003610	0	0
KIAA1409	57578	broad.mit.edu	37	14	94046585	94046585	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:94046585C>T	uc001ybv.1	+	16	2076	c.1993C>T	c.(1993-1995)CCC>TCC	p.P665S	KIAA1409_uc001ybs.1_Missense_Mutation_p.P665S	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	842						integral to membrane		p.I654_H670del(1)		ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		CTTCCAAGCCCCCTGGGGGGG	0.443													35	32					0	0	0.006230	0	0
KIAA1409	57578	broad.mit.edu	37	14	94089130	94089130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:94089130G>A	uc001ybv.1	+	28	5169	c.5086G>A	c.(5086-5088)GAG>AAG	p.E1696K	KIAA1409_uc001ybs.1_Missense_Mutation_p.E1674K	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	1851						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TATCCAGAGAGAGTACCTCGA	0.463													10	46					0	0	0.008291	0	0
KIAA1409	57578	broad.mit.edu	37	14	94120150	94120150	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:94120150A>G	uc001ybv.1	+	35	5881	c.5798A>G	c.(5797-5799)CAG>CGG	p.Q1933R	KIAA1409_uc001ybs.1_Missense_Mutation_p.Q1911R	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2088						integral to membrane		p.R1933W(1)		ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATCTTCCATCAGTTGGCCCCC	0.552													91	94					0	0	0.003610	0	0
SERPINA6	866	broad.mit.edu	37	14	94772500	94772500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:94772500C>T	uc001ycv.2	-	4	1044	c.940G>A	c.(940-942)GAT>AAT	p.D314N	SERPINA6_uc010auv.2_RNA	NM_001756	NP_001747	P08185	CBG_HUMAN	corticosteroid binding globulin precursor	314					regulation of proteolysis|transport	extracellular space	serine-type endopeptidase inhibitor activity|steroid binding			skin(3)|ovary(1)|central_nervous_system(1)	5		all_cancers(154;0.0482)|all_epithelial(191;0.166)		COAD - Colon adenocarcinoma(157;0.211)	Alclometasone(DB00240)|Beclomethasone(DB00394)|Ciclesonide(DB01410)|Flumethasone Pivalate(DB00663)|Flunisolide(DB00180)|Fluocinolone Acetonide(DB00591)|Fluocinonide(DB01047)|Fluorometholone(DB00324)|Flurandrenolide(DB00846)|Fluticasone Propionate(DB00588)|Halobetasol Propionate(DB00596)|Medrysone(DB00253)|Mitotane(DB00648)|Paramethasone(DB01384)|Prednisolone(DB00860)|Rimexolone(DB00896)|Triamcinolone(DB00620)	TCCAGCACATCTCCGAGGTCA	0.527													12	38					0	0	0.002450	0	0
SERPINA11	256394	broad.mit.edu	37	14	94912776	94912776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:94912776C>T	uc001ydd.1	-	3	869	c.809G>A	c.(808-810)GGA>GAA	p.G270E		NM_001080451	NP_001073920	Q86U17	SPA11_HUMAN	serpin peptidase inhibitor, clade A (alpha-1	270					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			kidney(1)	1				COAD - Colon adenocarcinoma(157;0.211)		CAAGGCATTTCCTCTGTATTC	0.542													20	47					0	0	0.001523	0	0
SERPINA9	327657	broad.mit.edu	37	14	94931130	94931130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:94931130G>A	uc001ydf.2	-	4	1179	c.1018C>T	c.(1018-1020)CTC>TTC	p.L340F	SERPINA9_uc001yde.2_Missense_Mutation_p.L240F|SERPINA9_uc010avc.2_Missense_Mutation_p.L191F|SERPINA9_uc001ydg.2_Missense_Mutation_p.L304F|SERPINA9_uc001ydh.1_Missense_Mutation_p.L340F|SERPINA9_uc001ydi.1_Missense_Mutation_p.L304F	NM_175739	NP_783866	Q86WD7	SPA9_HUMAN	serine (or cysteine) proteinase inhibitor, clade	322					regulation of proteolysis	cytoplasm|extracellular region|membrane	serine-type endopeptidase inhibitor activity			lung(1)|central_nervous_system(1)	2		all_cancers(154;0.0691)|all_epithelial(191;0.233)		Epithelial(152;0.144)|COAD - Colon adenocarcinoma(157;0.224)|all cancers(159;0.24)		ATCTTCGGGAGGATGGTTTCC	0.438													17	57					0	0	0.004990	0	0
TCL1A	8115	broad.mit.edu	37	14	96180341	96180341	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:96180341C>T	uc001yfc.3	-	1	193	c.63G>A	c.(61-63)TGG>TGA	p.W21*	uc001yfd.1_5'Flank|TCL1A_uc001yfb.3_Nonsense_Mutation_p.W21*	NM_001098725	NP_001092195	P56279	TCL1A_HUMAN	T-cell leukemia/lymphoma 1A	21					multicellular organismal development	endoplasmic reticulum|microsome				lung(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CGAACTTCTCCCAGGCCCACA	0.657			T	TRA@	T-CLL								29	50					0	0	0.001786	0	0
AK7	122481	broad.mit.edu	37	14	96864488	96864488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:96864488C>T	uc001yfn.2	+	2	226	c.182C>T	c.(181-183)TCA>TTA	p.S61L	AK7_uc001yfm.1_Missense_Mutation_p.S61L	NM_152327	NP_689540	Q96M32	KAD7_HUMAN	adenylate kinase 7	61	Potential.				cell projection organization	cytosol	adenylate kinase activity|ATP binding|cytidylate kinase activity			ovary(1)	1		all_cancers(154;0.0482)|all_epithelial(191;0.128)|Melanoma(154;0.155)		Epithelial(152;0.134)|COAD - Colon adenocarcinoma(157;0.228)		GAAAATAAGTCAGCTATGCTG	0.483													33	39					0	0	0.002445	0	0
HHIPL1	84439	broad.mit.edu	37	14	100126723	100126723	+	Silent	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:100126723T>A	uc010avs.2	+	5	1547	c.1482T>A	c.(1480-1482)ATT>ATA	p.I494I	HHIPL1_uc001ygl.1_Silent_p.I494I	NM_001127258	NP_001120730	Q96JK4	HIPL1_HUMAN	HHIP-like protein 1 isoform a	494					carbohydrate metabolic process	extracellular region|membrane	oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor|quinone binding|scavenger receptor activity			skin(2)	2		Melanoma(154;0.128)				GCCTCTACATTTTTGGGGATT	0.602													34	30					0	0	0.008740	0	0
WDR25	79446	broad.mit.edu	37	14	100996330	100996330	+	Silent	SNP	C	T	T	rs149360659	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:100996330C>T	uc010avx.2	+	7	1680	c.1587C>T	c.(1585-1587)TCC>TCT	p.S529S	WDR25_uc001yhm.2_Silent_p.S521S|WDR25_uc001yhn.2_Silent_p.S529S|WDR25_uc010avy.2_RNA|WDR25_uc001yho.2_Silent_p.S272S	NM_001161476	NP_001154948	Q64LD2	WDR25_HUMAN	WD repeat domain 25	529	WD 7.										0		Melanoma(154;0.212)				TGCTGCCCTCCGTCCTCGCCA	0.627													6	33					0	0	0.001984	0	0
MIR376B	574435	broad.mit.edu	37	14	101506849	101506849	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:101506849C>T	hsa-mir-376b|MI0002466	+			c.77C>T			uc010awc.1_5'Flank|MIR376A1_hsa-mir-376a-1|MI0000784_5'Flank|MIR300_hsa-mir-300|MI0005525_5'Flank|MIR1185-1_hsa-mir-1185-1|MI0003844_5'Flank																	0						AGAGGAAAATCCATGTTTTCA	0.423													10	9					0	0	0.006214	0	0
MIR134	406924	broad.mit.edu	37	14	101521068	101521068	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:101521068C>T	hsa-mir-134|MI0000474	+			c.45C>T			uc010txo.1_RNA|MIR668_hsa-mir-668|MI0003761_5'Flank|MIR485_hsa-mir-485|MI0002469_5'Flank|hsa-mir-323b|MI0014206_5'Flank																	0						ACTGTGTTCACCCTGTGGGCC	0.607													16	12					0	0	0.006122	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102469167	102469167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:102469167C>T	uc001yks.2	+	23	4912	c.4748C>T	c.(4747-4749)TCC>TTC	p.S1583F		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	1583	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						AAAAAAGTGTCCAAGTCTCCC	0.443													12	47					0	0	0.001855	0	0
CDC42BPB	9578	broad.mit.edu	37	14	103442121	103442121	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:103442121C>T	uc001ymi.1	-	11	1639	c.1407G>A	c.(1405-1407)CAG>CAA	p.Q469Q		NM_006035	NP_006026	Q9Y5S2	MRCKB_HUMAN	CDC42-binding protein kinase beta	469	Potential.				actin cytoskeleton reorganization|establishment or maintenance of cell polarity|intracellular signal transduction	cell leading edge|cell-cell junction|cytoplasm|cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity|small GTPase regulator activity			large_intestine(3)|skin(3)|lung(2)|stomach(1)|breast(1)|ovary(1)	11		Melanoma(154;0.155)		Colorectal(3;0.0129)|READ - Rectum adenocarcinoma(2;0.0419)|Epithelial(152;0.0474)|all cancers(159;0.199)		CGTGGAGGGACTGCACGGTCT	0.577													24	108					0	0	0.008361	0	0
Unknown	0	broad.mit.edu	37	14	103708289	103708289	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:103708289C>T	uc001ymo.1	+	1		c.493C>T								full-length cDNA clone CS0DE012YF10 of Placenta of Homo sapiens (human).																		GGAACCTATTCCCTATGGATT	0.453													7	17					0	0	0.003080	0	0
BRF1	2972	broad.mit.edu	37	14	105752682	105752682	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:105752682G>A	uc001yqp.2	-	2	579	c.216C>T	c.(214-216)GGC>GGT	p.G72G	BRF1_uc010tyo.1_5'UTR|BRF1_uc010typ.1_5'UTR|BRF1_uc010axg.1_Intron|BRF1_uc001yqr.2_Silent_p.G72G	NM_001519	NP_001510	Q92994	TF3B_HUMAN	transcription initiation factor IIIB isoform 1	72					positive regulation of transcription, DNA-dependent|rRNA transcription|transcription initiation from RNA polymerase III promoter|tRNA transcription	transcription factor TFIIIB complex	translation initiation factor activity|zinc ion binding			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4		all_cancers(154;0.0231)|all_epithelial(191;0.0694)|Melanoma(154;0.155)	OV - Ovarian serous cystadenocarcinoma(23;0.00753)|all cancers(16;0.00925)|Epithelial(46;0.0221)	Epithelial(152;0.14)		TCACGTGGAAGCCGCCACCCA	0.552													12	11					0	0	0.002450	0	0
ADAM6	8755	broad.mit.edu	37	14	106110065	106110066	+	RNA	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:106110065_106110066GG>AA	uc010tyt.1	-	3642		c.61185_61186CC>TT			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_RNA					Parts of antibodies, mostly variable regions.												0						ACGACGGTGAGGACGCTGACCA	0.569													33	120					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106236270	106236270	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:106236270C>T	uc010tyt.1	-	3616		c.57674G>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						ATAAGGGTATCCTTGGGTTTT	0.597													30	28					0	0	0.006320	0	0
ADAM6	8755	broad.mit.edu	37	14	106757778	106757778	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:106757778C>T	uc010tyt.1	-	472		c.16287G>A								Parts of antibodies, mostly variable regions.												0						TAGGATTTTTCGTCATTCGAA	0.532													41	44					0	0	0.006999	0	0
ADAM6	8755	broad.mit.edu	37	14	106963032	106963032	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:106963032G>A	uc010tyt.1	-	207		c.9652C>T								Parts of antibodies, mostly variable regions.												0						ACTCTGTCCTGGAATTTCTGT	0.542													66	64					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106963163	106963163	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:106963163G>A	uc010tyt.1	-	207		c.9521C>T								Parts of antibodies, mostly variable regions.												0						AGCCTTGCAGGAAACCTTCAC	0.577													12	43					0	0	0.001368	0	0
ADAM6	8755	broad.mit.edu	37	14	106967498	106967498	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:106967498C>T	uc010tyt.1	-	201		c.8943G>A								Parts of antibodies, mostly variable regions.												0						GAAGAACTTTCCTCTCAGAGG	0.488													12	35					0	0	0.001368	0	0
ADAM6	8755	broad.mit.edu	37	14	107087259	107087259	+	RNA	SNP	T	G	G	rs55858290	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:107087259T>G	uc010tyt.1	-	111		c.5096A>C								Parts of antibodies, mostly variable regions.												0						CATTTGCAGATACAGTGAATT	0.478													7	48					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	107113998	107113998	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:107113998G>A	uc010tyt.1	-	84		c.3875C>T								Parts of antibodies, mostly variable regions.												0						CCCCCAGGCTGGACCAAGCCT	0.577													7	114					0	0	0.004482	0	0
ADAM6	8755	broad.mit.edu	37	14	107282946	107282946	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:107282946C>T	uc010tyt.1	-	2		c.120G>A			uc001ytb.1_Nonsense_Mutation_p.W66*					Parts of antibodies, mostly variable regions.												0						CCATCCCATCCACTCAAGCCC	0.552													29	50					0	0	0.001786	0	0
NF1P1	440225	broad.mit.edu	37	15	22143161	22143161	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:22143161G>A	uc010tzs.1	-	3		c.426C>T								Human NF1-related locus DNA in A9 mouse DNA background.												0						TGCCTCAGAGGAGAGTCTGAA	0.398													20	52					0	0	0.001523	0	0
OR4N4	283694	broad.mit.edu	37	15	22382676	22382676	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:22382676C>T	uc001yuc.1	+	7	1185	c.204C>T	c.(202-204)TTC>TTT	p.F68F	LOC727924_uc001yub.1_RNA|OR4N4_uc010tzv.1_Silent_p.F68F	NM_001005241	NP_001005241	Q8N0Y3	OR4N4_HUMAN	olfactory receptor, family 4, subfamily N,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ACTTGGCCTTCCTGGATGCAT	0.483													12	100					0	0	0.004656	0	0
OR4N3P	390539	broad.mit.edu	37	15	22413779	22413779	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:22413779C>T	uc001yuf.2	+	1	78	c.78C>T	c.(76-78)TTC>TTT	p.F26F		NM_001080841	NP_001074310			RecName: Full=Olfactory receptor 4N2; AltName: Full=Olfactory receptor OR14-8; AltName: Full=Olfactory receptor OR14-13;												0						TCTTGCACTTCCTTGGAGGAG	0.493													15	73					0	0	0.002299	0	0
C15orf2	23742	broad.mit.edu	37	15	24923506	24923506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:24923506C>T	uc001ywo.2	+	1	2966	c.2492C>T	c.(2491-2493)TCC>TTC	p.S831F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	831					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		ACCCCTCCTTCCAAAACTGTC	0.498													51	55					0	0	0.003610	0	0
ATP10A	57194	broad.mit.edu	37	15	25924899	25924899	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:25924899G>A	uc010ayu.2	-	21	4195	c.4089C>T	c.(4087-4089)TCC>TCT	p.S1363S		NM_024490	NP_077816	O60312	AT10A_HUMAN	ATPase, class V, type 10A	1363	Cytoplasmic (Potential).				ATP biosynthetic process|regulation of cell shape	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			pancreas(2)|ovary(1)|breast(1)|liver(1)	5		all_cancers(20;5.16e-25)|all_lung(180;1.51e-14)|Acute lymphoblastic leukemia(1;2.53e-05)|all_hematologic(1;0.000267)|Breast(32;0.00125)		all cancers(64;9.48e-07)|Epithelial(43;1.69e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0252)|Lung(196;0.244)		TGGCCTCCAGGGAGCAGACCG	0.657													18	27					0	0	0.008871	0	0
TJP1	7082	broad.mit.edu	37	15	30058537	30058537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:30058537C>T	uc001zcr.2	-	5	996	c.521G>A	c.(520-522)CGG>CAG	p.R174Q	TJP1_uc010azl.2_Missense_Mutation_p.R162Q|TJP1_uc001zcq.2_Missense_Mutation_p.R178Q|TJP1_uc001zcs.2_Missense_Mutation_p.R174Q	NM_003257	NP_003248	Q07157	ZO1_HUMAN	tight junction protein 1 isoform a	174					cell-cell junction assembly|cellular component disassembly involved in apoptosis	basolateral plasma membrane|cell-cell adherens junction|Golgi apparatus|tight junction				ovary(4)|central_nervous_system(1)|pancreas(1)	6		all_lung(180;7.48e-11)|Breast(32;0.000153)		all cancers(64;3.29e-10)|Epithelial(43;5.34e-09)|BRCA - Breast invasive adenocarcinoma(123;0.0034)|GBM - Glioblastoma multiforme(186;0.0139)|Lung(196;0.186)		AGCCACTGACCGCCTGTCTGA	0.507													19	70					0	0	0.001523	0	0
TRPM1	4308	broad.mit.edu	37	15	31339375	31339375	+	Missense_Mutation	SNP	C	T	T	rs147667317	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:31339375C>T	uc001zfm.2	-	14	1765	c.1637G>A	c.(1636-1638)CGC>CAC	p.R546H	TRPM1_uc010azy.2_Missense_Mutation_p.R453H|TRPM1_uc001zfl.2_RNA	NM_002420	NP_002411	Q7Z4N2	TRPM1_HUMAN	transient receptor potential cation channel,	546	Cytoplasmic (Potential).				cellular response to light stimulus|visual perception	integral to plasma membrane	calcium channel activity|receptor activity			ovary(2)|pancreas(1)|skin(1)	4		all_lung(180;1.92e-11)		all cancers(64;3.52e-16)|Epithelial(43;1.65e-11)|GBM - Glioblastoma multiforme(186;3.57e-05)|BRCA - Breast invasive adenocarcinoma(123;0.00533)|COAD - Colon adenocarcinoma(236;0.0609)|Lung(196;0.199)		GTAGTTGCAGCGGTAGGCTCC	0.507													36	43					0	0	0.006999	0	0
GJD2	57369	broad.mit.edu	37	15	35045085	35045085	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:35045085G>A	uc001zis.1	-	2	560	c.560C>T	c.(559-561)TCC>TTC	p.S187F	uc001zit.1_5'Flank	NM_020660	NP_065711	Q9UKL4	CXD2_HUMAN	gap junction protein, delta 2, 36kDa	187	Cytoplasmic (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_lung(180;9.67e-07)		all cancers(64;2.75e-18)|GBM - Glioblastoma multiforme(113;1.9e-07)|BRCA - Breast invasive adenocarcinoma(123;0.0156)		TCTGAGCTTGGATTTTGATGC	0.488													41	54					0	0	0.008740	0	0
FSIP1	161835	broad.mit.edu	37	15	39910064	39910064	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:39910064G>A	uc001zki.2	-	11	1789	c.1571C>T	c.(1570-1572)TCG>TTG	p.S524L		NM_152597	NP_689810	Q8NA03	FSIP1_HUMAN	fibrous sheath interacting protein 1	524										ovary(2)|skin(1)	3		all_cancers(109;2.66e-19)|all_epithelial(112;2.66e-16)|Lung NSC(122;1.5e-11)|all_lung(180;4.03e-10)|Melanoma(134;0.0575)|Ovarian(310;0.0827)|Colorectal(260;0.119)		GBM - Glioblastoma multiforme(113;8.22e-06)|BRCA - Breast invasive adenocarcinoma(123;0.142)		AAGAGTCTTCGACATAAAATA	0.398													17	57					0	0	0.007413	0	0
DISP2	85455	broad.mit.edu	37	15	40659789	40659789	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:40659789C>T	uc001zlk.1	+	8	1565	c.1476C>T	c.(1474-1476)CCC>CCT	p.P492P		NM_033510	NP_277045	A7MBM2	DISP2_HUMAN	dispatched B	492	Helical; (Potential).|SSD.				smoothened signaling pathway	integral to membrane				ovary(2)	2		all_cancers(109;9.35e-19)|all_epithelial(112;1.18e-15)|Lung NSC(122;2.45e-11)|all_lung(180;6.47e-10)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.39e-06)|Colorectal(105;0.0114)|READ - Rectum adenocarcinoma(2;0.0649)|BRCA - Breast invasive adenocarcinoma(123;0.0798)|Lung(196;0.15)|LUAD - Lung adenocarcinoma(183;0.247)		CGGTGTACCCCTTGCTGGCTC	0.622													36	38					0	0	0.004289	0	0
IVD	3712	broad.mit.edu	37	15	40703543	40703543	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:40703543G>A	uc001zls.3	+	5	884	c.550G>A	c.(550-552)GAA>AAA	p.E184K	IVD_uc001zlq.2_Missense_Mutation_p.E154K	NM_002225	NP_002216	P26440	IVD_HUMAN	isovaleryl Coenzyme A dehydrogenase isoform 1	181					leucine catabolic process	mitochondrial matrix	flavin adenine dinucleotide binding|isovaleryl-CoA dehydrogenase activity			ovary(1)	1		all_cancers(109;1.19e-18)|all_epithelial(112;1.52e-15)|Lung NSC(122;5.14e-11)|all_lung(180;1.27e-09)|Melanoma(134;0.0574)|Ovarian(310;0.0822)|Colorectal(260;0.117)		GBM - Glioblastoma multiforme(113;3.65e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0808)		GCTCAAAGCGGAAAAGAAAGG	0.522													56	54					0	0	0.003610	0	0
INO80	54617	broad.mit.edu	37	15	41348837	41348837	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:41348837G>A	uc001zni.2	-	17	2266	c.2053C>T	c.(2053-2055)CAG>TAG	p.Q685*	INO80_uc010ucu.1_RNA	NM_017553	NP_060023	Q9ULG1	INO80_HUMAN	INO80 complex homolog 1	685	Assembles INO80 complex module consisting of conserved components INO80B, INO80C, ACTR5, RVBL1, RVBL2.|Helicase ATP-binding.				cell division|cellular response to ionizing radiation|cellular response to UV|chromatin remodeling|double-strand break repair via homologous recombination|mitotic sister chromatid segregation|positive regulation of cell growth|positive regulation of DNA replication involved in S phase|positive regulation of transcription from RNA polymerase II promoter|regulation of G1/S transition of mitotic cell cycle|spindle assembly|UV-damage excision repair	Ino80 complex|microtubule	actin binding|alpha-tubulin binding|ATP binding|ATPase activity|DNA binding|DNA helicase activity			ovary(2)|pancreas(1)|skin(1)	4						ATGGTGTTCTGAATTGGGGTC	0.423													87	113					0	0	0.003610	0	0
MGA	23269	broad.mit.edu	37	15	42000029	42000030	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:42000029_42000030CC>TT	uc001zog.1	+	6	2383_2384	c.2292_2293CC>TT	c.(2290-2295)AACCTT>AATTTT	p.L765F	MGA_uc010ucy.1_Missense_Mutation_p.L765F|MGA_uc010ucz.1_Missense_Mutation_p.L765F	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	765						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CTTTTTGGAACCTTACAGGAAC	0.366													9	52					0	0	0.004672	0	0
SPTBN5	51332	broad.mit.edu	37	15	42178457	42178457	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:42178457C>T	uc001zos.2	-	7	1224	c.891G>A	c.(889-891)CGG>CGA	p.R297R		NM_016642	NP_057726	Q9NRC6	SPTN5_HUMAN	spectrin, beta, non-erythrocytic 5	332	Spectrin 1.				actin cytoskeleton organization|actin filament capping|axon guidance	cytosol|membrane|spectrin				ovary(1)|central_nervous_system(1)	2		all_cancers(109;1.84e-17)|all_epithelial(112;1.12e-15)|Lung NSC(122;7.6e-10)|all_lung(180;4.15e-09)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		all cancers(2;4.33e-34)|Epithelial(2;1.72e-25)|OV - Ovarian serous cystadenocarcinoma(18;8.32e-20)|GBM - Glioblastoma multiforme(94;4.69e-07)|Colorectal(2;0.00104)|COAD - Colon adenocarcinoma(120;0.0405)|READ - Rectum adenocarcinoma(92;0.0908)		CTGGAAAATCCCGCGCCTCCA	0.627													13	10					0	0	0.001855	0	0
ZFP106	64397	broad.mit.edu	37	15	42743992	42743992	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:42743992C>T	uc001zpw.2	-	2	744	c.409G>A	c.(409-411)GAT>AAT	p.D137N	ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_5'UTR|ZFP106_uc001zpy.1_Missense_Mutation_p.D160N	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	137						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TTAAAGCCATCTTTTTCCCAT	0.488													35	37					0	0	0.002836	0	0
TGM7	116179	broad.mit.edu	37	15	43572089	43572089	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:43572089C>A	uc001zrf.1	-	10	1417	c.1412G>T	c.(1411-1413)AGA>ATA	p.R471I		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	471					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	CAAAGAAGCTCTTTGGGGGCC	0.597													29	31					2.47511e-08	3.48315e-08	0.008361	1	0
MAP1A	4130	broad.mit.edu	37	15	43816167	43816167	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:43816167C>T	uc001zrt.2	+	4	2963	c.2496C>T	c.(2494-2496)ATC>ATT	p.I832I		NM_002373	NP_002364	P78559	MAP1A_HUMAN	microtubule-associated protein 1A	832						cytoplasm|microtubule|microtubule associated complex	protein binding|structural molecule activity			ovary(3)|breast(3)|pancreas(2)|skin(1)	9		all_cancers(109;1.03e-14)|all_epithelial(112;2.23e-12)|Lung NSC(122;2.76e-08)|all_lung(180;3.1e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;3.05e-06)	Estramustine(DB01196)	CCACTTCAATCACTGAGTGTG	0.522													15	23					0	0	0.003163	0	0
FRMD5	84978	broad.mit.edu	37	15	44181045	44181045	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:44181045C>T	uc001ztl.2	-	9	931	c.754G>A	c.(754-756)GAA>AAA	p.E252K	FRMD5_uc001ztj.1_5'UTR|FRMD5_uc001ztk.1_Missense_Mutation_p.E163K|FRMD5_uc001ztm.2_5'UTR|FRMD5_uc001ztn.2_Missense_Mutation_p.E18K	NM_032892	NP_116281	Q7Z6J6	FRMD5_HUMAN	FERM domain containing 5 isoform 2	252	FERM.					cytoplasm|cytoskeleton|extrinsic to membrane|integral to membrane	cytoskeletal protein binding			ovary(1)	1		all_cancers(109;2.29e-15)|all_epithelial(112;9.98e-13)|Lung NSC(122;4.89e-08)|all_lung(180;5.08e-07)|Melanoma(134;0.0275)		all cancers(107;8.63e-20)|GBM - Glioblastoma multiforme(94;3.63e-06)		GTCTTTCCTTCAAATTTCAGC	0.473													12	48					0	0	0.001855	0	0
SLC12A1	6557	broad.mit.edu	37	15	48536965	48536965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:48536965G>A	uc001zwn.3	+	11	1532	c.1316G>A	c.(1315-1317)CGA>CAA	p.R439Q	SLC12A1_uc010uew.1_Missense_Mutation_p.R245Q|SLC12A1_uc010bem.2_Missense_Mutation_p.R439Q|SLC12A1_uc001zwq.3_Missense_Mutation_p.R210Q|SLC12A1_uc001zwr.3_Missense_Mutation_p.R166Q	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	439					potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TGTGTGGTCCGAGATGCCACC	0.458													6	29					0	0	0.001168	0	0
SLC12A1	6557	broad.mit.edu	37	15	48539563	48539563	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:48539563C>T	uc001zwn.3	+	13	1806	c.1590C>T	c.(1588-1590)GCC>GCT	p.A530A	SLC12A1_uc010uew.1_Silent_p.A336A|SLC12A1_uc010bem.2_Silent_p.A530A|SLC12A1_uc001zwq.3_Silent_p.A301A|SLC12A1_uc001zwr.3_Silent_p.A257A	NM_000338	NP_000329	Q13621	S12A1_HUMAN	sodium potassium chloride cotransporter 2	530	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane|membrane fraction	sodium:potassium:chloride symporter activity			ovary(1)|central_nervous_system(1)	2		all_lung(180;0.00219)		all cancers(107;1.76e-09)|GBM - Glioblastoma multiforme(94;1.48e-06)	Bumetanide(DB00887)|Chlormerodrin(DB00534)|Chlorthalidone(DB00310)|Ethacrynic acid(DB00903)|Furosemide(DB00695)|Hydroflumethiazide(DB00774)|Methyclothiazide(DB00232)|Metolazone(DB00524)|Potassium Chloride(DB00761)|Torasemide(DB00214)|Trichlormethiazide(DB01021)	TCTACAAAGCCCTGCAGTTTT	0.368													25	35					0	0	0.002096	0	0
ATP8B4	79895	broad.mit.edu	37	15	50399151	50399151	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:50399151C>T	uc001zxu.2	-	2	155	c.13G>A	c.(13-15)GAA>AAA	p.E5K	ATP8B4_uc010ber.2_5'UTR|ATP8B4_uc010ufd.1_5'UTR|ATP8B4_uc010ufe.1_RNA	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	5	Cytoplasmic (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		AATTTCTTTTCACTGCAGAAC	0.269													23	27					0	0	0.004656	0	0
SLC27A2	11001	broad.mit.edu	37	15	50474704	50474704	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:50474704T>A	uc001zxw.2	+	1	312	c.80T>A	c.(79-81)TTC>TAC	p.F27Y	SLC27A2_uc010bes.2_Missense_Mutation_p.F27Y	NM_003645	NP_003636	O14975	S27A2_HUMAN	solute carrier family 27 (fatty acid	27	Helical; (Potential).				bile acid biosynthetic process|fatty acid alpha-oxidation	endoplasmic reticulum membrane|integral to membrane|peroxisomal matrix|peroxisomal membrane	ATP binding|long-chain fatty acid-CoA ligase activity|phytanate-CoA ligase activity|pristanate-CoA ligase activity			ovary(1)|skin(1)	2		all_lung(180;0.00177)		all cancers(107;1.16e-06)|GBM - Glioblastoma multiforme(94;0.000113)		CCATACTTCTTCCAGGACATA	0.662													6	12					0	0	0.003080	0	0
DMXL2	23312	broad.mit.edu	37	15	51742485	51742485	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:51742485G>A	uc002abf.2	-	42	8967	c.8742C>T	c.(8740-8742)CTC>CTT	p.L2914L	DMXL2_uc002abd.2_Silent_p.L1006L|DMXL2_uc010ufy.1_Silent_p.L2915L|DMXL2_uc010bfa.2_Silent_p.L2278L|DMXL2_uc002abc.2_RNA	NM_015263	NP_056078	Q8TDJ6	DMXL2_HUMAN	Dmx-like 2	2914	WD 14.					cell junction|synaptic vesicle membrane	Rab GTPase binding			ovary(6)|skin(3)	9				all cancers(107;0.00494)		CCGAGATTAGGAGTTGCTGTT	0.473													18	70					0	0	0.001523	0	0
MYO5A	4644	broad.mit.edu	37	15	52664450	52664450	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:52664450G>A	uc002aby.2	-	21	2932	c.2688C>T	c.(2686-2688)TTC>TTT	p.F896F	MYO5A_uc002abx.3_Silent_p.F896F|MYO5A_uc010uge.1_Silent_p.F765F	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	896	IQ 6.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		TCATCCGCCTGAAGCAGCACT	0.537													19	34					0	0	0.001882	0	0
WDR72	256764	broad.mit.edu	37	15	53889321	53889321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:53889321C>T	uc002acj.2	-	18	3145	c.3103G>A	c.(3103-3105)GAA>AAA	p.E1035K		NM_182758	NP_877435	Q3MJ13	WDR72_HUMAN	WD repeat domain 72	1035										lung(1)|skin(1)	2				all cancers(107;0.0511)		TCTAGTTCTTCTGTCCATTCC	0.388													30	115					0	0	0.002096	0	0
UNC13C	440279	broad.mit.edu	37	15	54306001	54306001	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:54306001G>A	uc002ack.2	+	1	901	c.901G>A	c.(901-903)GAA>AAA	p.E301K		NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	301					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GTCTCGGAGGGAAACTAGAGA	0.428													44	55					0	0	0.002852	0	0
CGNL1	84952	broad.mit.edu	37	15	57731401	57731401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:57731401G>A	uc002aeg.2	+	2	1280	c.1204G>A	c.(1204-1206)GAG>AAG	p.E402K	CGNL1_uc010bfw.2_Missense_Mutation_p.E402K	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	402	Head.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		AGGGAACTCGGAGTACCTGAT	0.542													67	50					0	0	0.003610	0	0
CGNL1	84952	broad.mit.edu	37	15	57753911	57753911	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:57753911C>T	uc002aeg.2	+	8	2300	c.2224C>T	c.(2224-2226)CTG>TTG	p.L742L	CGNL1_uc010bfw.2_Silent_p.L742L	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	742	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		TCTTCAAGATCTGCTGATTGC	0.498													25	76					0	0	0.006320	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59499502	59499502	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:59499502G>A	uc002agb.2	+	1	461	c.363G>A	c.(361-363)ACG>ACA	p.T121T	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	121					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	GCCCTTTCACGAAAATGCCAA	0.428													21	66					0	0	0.001523	0	0
TLN2	83660	broad.mit.edu	37	15	63000770	63000770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:63000770C>T	uc002alb.3	+	18	2242	c.2242C>T	c.(2242-2244)CGC>TGC	p.R748C		NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	748					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						GCTGGTGGACCGCTCGGTGGA	0.617													6	36					0	0	0.001168	0	0
LACTB	114294	broad.mit.edu	37	15	63433670	63433670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:63433670C>T	uc002alw.2	+	6	1349	c.1310C>T	c.(1309-1311)CCA>CTA	p.P437L		NM_032857	NP_116246	P83111	LACTB_HUMAN	lactamase, beta isoform a	437						mitochondrion	hydrolase activity				0						TACCTCAAACCAGAAACAATG	0.423													13	43					0	0	0.002450	0	0
DAPK2	23604	broad.mit.edu	37	15	64200735	64200735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:64200735C>T	uc002amr.2	-	12	1128	c.1097G>A	c.(1096-1098)AGG>AAG	p.R366K	DAPK2_uc010uim.1_RNA	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	366					apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		GGTGCTGCTCCTCCTCCGTGG	0.607													4	4					0	0	0.000602	0	0
IQCH	64799	broad.mit.edu	37	15	67649700	67649700	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:67649700C>T	uc002aqo.1	+	7	702	c.655C>T	c.(655-657)CGG>TGG	p.R219W	IQCH_uc010ujv.1_Missense_Mutation_p.R51W|IQCH_uc002aqn.1_Missense_Mutation_p.R46W|IQCH_uc002aqq.1_5'UTR|IQCH_uc002aqp.1_5'UTR	NM_001031715	NP_001026885	Q86VS3	IQCH_HUMAN	IQ motif containing H isoform 1	219										skin(3)|ovary(1)	4				Colorectal(3;0.0856)		CACTATACCTCGGGAACCACC	0.398													21	21					0	0	0.002299	0	0
NOX5	79400	broad.mit.edu	37	15	69325617	69325617	+	Silent	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:69325617G>T	uc002ars.1	+	5	875	c.855G>T	c.(853-855)GCG>GCT	p.A285A	NOX5_uc002arp.1_Silent_p.A267A|NOX5_uc002arq.1_Silent_p.A239A|NOX5_uc010bid.1_Silent_p.A250A|NOX5_uc002arr.1_Silent_p.A257A|NOX5_uc010bie.1_Silent_p.A85A|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	285	Helical; (Potential).				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GCTTCATCGCGGTAGGCTCTG	0.607													5	3					0.00116845	0.00163171	0.001168	1	0
NOX5	79400	broad.mit.edu	37	15	69335131	69335131	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:69335131C>T	uc002ars.1	+	10	1653	c.1633C>T	c.(1633-1635)CAA>TAA	p.Q545*	NOX5_uc002arp.1_Nonsense_Mutation_p.Q527*|NOX5_uc002arq.1_Nonsense_Mutation_p.Q499*|NOX5_uc010bid.1_Nonsense_Mutation_p.Q510*|NOX5_uc002arr.1_Nonsense_Mutation_p.Q517*|NOX5_uc010bie.1_Nonsense_Mutation_p.Q345*|NOX5_uc010bif.1_RNA	NM_024505	NP_078781	Q96PH1	NOX5_HUMAN	NADPH oxidase, EF-hand calcium binding domain 5	545	FAD-binding FR-type.|Cytoplasmic (Potential).|C-terminal catalytic region.				angiogenesis|angiogenesis|cytokine secretion|cytokinesis|electron transport chain|endothelial cell proliferation|induction of apoptosis|positive regulation of reactive oxygen species metabolic process|regulation of fusion of sperm to egg plasma membrane|regulation of proton transport|superoxide anion generation	endoplasmic reticulum|endoplasmic reticulum|integral to membrane	calcium ion binding|electron carrier activity|flavin adenine dinucleotide binding|heme binding|hydrogen ion channel activity|NADP binding|superoxide-generating NADPH oxidase activity			breast(1)|pancreas(1)	2						GAGAAAGAGTCAAAGGTCGTC	0.537													14	16					0	0	0.003163	0	0
UACA	55075	broad.mit.edu	37	15	70960839	70960839	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:70960839G>A	uc002asr.2	-	16	2288	c.2184C>T	c.(2182-2184)CTC>CTT	p.L728L	UACA_uc010uke.1_Silent_p.L619L|UACA_uc002asq.2_Silent_p.L715L|UACA_uc010bin.1_Silent_p.L703L	NM_018003	NP_060473	Q9BZF9	UACA_HUMAN	uveal autoantigen with coiled-coil domains and	728	Potential.					cytoskeleton|extracellular region				ovary(2)|pancreas(1)|skin(1)	4						GCTCCTTGAGGAGCTTATTAT	0.308													38	45					0	0	0.003755	0	0
NR2E3	10002	broad.mit.edu	37	15	72109899	72109899	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:72109899G>A	uc002ati.2	+	9	1297	c.1107G>A	c.(1105-1107)GGG>GGA	p.G369G		NM_014249	NP_055064	Q9Y5X4	NR2E3_HUMAN	photoreceptor-specific nuclear receptor isoform	369					phototransduction|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription from RNA polymerase II promoter|visual perception	nucleoplasm	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding				0						TCAGGTTTGGGAAATTGCTCC	0.552													47	62					0	0	0.003610	0	0
MYO9A	4649	broad.mit.edu	37	15	72141213	72141213	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:72141213G>A	uc002atl.3	-	39	7283	c.6810C>T	c.(6808-6810)ACC>ACT	p.T2270T	MYO9A_uc002atj.2_Silent_p.T183T|MYO9A_uc002atk.2_Silent_p.T1065T	NM_006901	NP_008832	B2RTY4	MYO9A_HUMAN	myosin IXA	2270	Tail.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|visual perception	cytosol|integral to membrane|unconventional myosin complex	actin binding|ATP binding|GTPase activator activity|metal ion binding|motor activity			ovary(1)|pancreas(1)|skin(1)	3						GTGACAACCTGGTCTTTGCCT	0.383													16	70					0	0	0.004007	0	0
MAN2C1	4123	broad.mit.edu	37	15	75648297	75648297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:75648297G>A	uc002baf.2	-	26	3090	c.3073C>T	c.(3073-3075)CCC>TCC	p.P1025S	MIR631_hsa-mir-631|MI0003645_5'Flank|MAN2C1_uc002bag.2_Missense_Mutation_p.P1002S|MAN2C1_uc002bah.2_Missense_Mutation_p.P1042S|MAN2C1_uc010bkk.2_Missense_Mutation_p.P926S	NM_006715	NP_006706	Q9NTJ4	MA2C1_HUMAN	mannosidase, alpha, class 2C, member 1	1025					mannose metabolic process		alpha-mannosidase activity|carbohydrate binding|protein binding|zinc ion binding				0						ACTTGGAAGGGAGAAAAGGTG	0.582													4	12					0	0	0.000602	0	0
SIN3A	25942	broad.mit.edu	37	15	75676624	75676624	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:75676624G>A	uc002bai.2	-	17	3435	c.3176C>T	c.(3175-3177)TCA>TTA	p.S1059L	SIN3A_uc002baj.2_Missense_Mutation_p.S1059L|SIN3A_uc010uml.1_Missense_Mutation_p.S1059L	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	1059					blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						ATTCTCATCTGACATTAGCTG	0.483													49	124					0	0	0.003610	0	0
C15orf27	123591	broad.mit.edu	37	15	76496597	76496597	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:76496597G>A	uc002bbq.2	+	11	1692	c.1537G>A	c.(1537-1539)GAC>AAC	p.D513N	C15orf27_uc010bkp.2_Intron|C15orf27_uc002bbr.2_Missense_Mutation_p.D329N|C15orf27_uc002bbs.2_Missense_Mutation_p.D191N	NM_152335	NP_689548	Q2M3C6	CO027_HUMAN	hypothetical protein LOC123591	513						integral to membrane					0						CATGCTGGAGGACAAGTTCAG	0.547													23	66					0	0	0.003954	0	0
RASGRF1	5923	broad.mit.edu	37	15	79350700	79350700	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:79350700G>A	uc002beq.2	-	3	882	c.507C>T	c.(505-507)ATC>ATT	p.I169I	RASGRF1_uc002bep.2_Silent_p.I169I|RASGRF1_uc010blm.1_Silent_p.I91I|RASGRF1_uc002ber.3_Silent_p.I169I	NM_002891	NP_002882	Q13972	RGRF1_HUMAN	Ras protein-specific guanine	169					activation of Rac GTPase activity|apoptosis|induction of apoptosis by extracellular signals|long-term memory|nerve growth factor receptor signaling pathway|neuron projection development|regulation of Rac protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|growth cone|plasma membrane|synaptosome	Rho guanyl-nucleotide exchange factor activity			skin(4)|ovary(1)|central_nervous_system(1)	6						GCTCGATCTCGATCTCCCCAT	0.602													36	22					0	0	0.008740	0	0
KIAA1199	57214	broad.mit.edu	37	15	81230231	81230231	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:81230231G>A	uc002bfw.1	+	24	3578	c.3318G>A	c.(3316-3318)AAG>AAA	p.K1106K	KIAA1199_uc010unn.1_Silent_p.K1106K	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	1106										upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						AAACGTCCAAGACGGGCGTCT	0.602													17	23					0	0	0.004990	0	0
ADAMTSL3	57188	broad.mit.edu	37	15	84581953	84581953	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:84581953C>T	uc002bjz.3	+	16	2034	c.1810C>T	c.(1810-1812)CTG>TTG	p.L604L	ADAMTSL3_uc010bmt.1_Silent_p.L604L|ADAMTSL3_uc010bmu.1_Silent_p.L604L	NM_207517	NP_997400	P82987	ATL3_HUMAN	ADAMTS-like 3 precursor	604	TSP type-1 4.					proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(6)|central_nervous_system(5)|lung(5)|large_intestine(4)|breast(3)|skin(2)|kidney(1)|pancreas(1)	27			BRCA - Breast invasive adenocarcinoma(143;0.211)			TGAGACTGAGCTGCCCGAGGA	0.632													11	31					0	0	0.000978	0	0
GOLGA6L5	374650	broad.mit.edu	37	15	85056034	85056034	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:85056034C>T	uc002bkm.2	-	6		c.526G>A				NR_003246				Homo sapiens cDNA FLJ33459 fis, clone BRAMY2000585.												0						CTTAGATGGCCCTGCTGGGGG	0.512													5	12					0	0	0.003080	0	0
ZNF592	9640	broad.mit.edu	37	15	85341835	85341836	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:85341835_85341836CC>TT	uc002bld.2	+	8	3089_3090	c.2753_2754CC>TT	c.(2752-2754)CCC>CTT	p.P918L	ZNF592_uc010upb.1_RNA	NM_014630	NP_055445	Q92610	ZN592_HUMAN	zinc finger protein 592	918					cell death|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(2)	6			BRCA - Breast invasive adenocarcinoma(143;0.0587)			CACGGTGTTCCCCGAAATGTGG	0.609													5	33					0	0	0.004672	0	0
ACAN	176	broad.mit.edu	37	15	89402194	89402194	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:89402194C>T	uc010upo.1	+	12	6752	c.6378C>T	c.(6376-6378)TCC>TCT	p.S2126S	ACAN_uc010upp.1_Silent_p.S2126S|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	2126					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			ATTCTGGGTCCCCTGATCTGA	0.552													8	32					0	0	0.003080	0	0
PLIN1	5346	broad.mit.edu	37	15	90210242	90210242	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:90210242C>T	uc010upx.1	-	8	1244	c.1134G>A	c.(1132-1134)GGG>GGA	p.G378G	PLIN1_uc002boh.2_Silent_p.G378G	NM_001145311	NP_001138783	O60240	PLIN1_HUMAN	perilipin 1	378					triglyceride catabolic process	lipid particle	lipid binding	p.G378G(1)		central_nervous_system(1)|skin(1)	2						ACATGGCCCTCCCCTTGGTTG	0.612													5	19					0	0	0.000602	0	0
CRTC3	64784	broad.mit.edu	37	15	91147627	91147628	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:91147627_91147628CC>TT	uc002bpp.2	+	5	530_531	c.424_425CC>TT	c.(424-426)CCT>TTT	p.P142F	CRTC3_uc002bpo.2_Missense_Mutation_p.P142F	NM_022769	NP_073606	Q6UUV7	CRTC3_HUMAN	transducer of regulated CREB protein 3 isoform	142					interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus			CRTC3/MAML2(26)	salivary_gland(26)|ovary(1)	27	Melanoma(11;0.00551)|Lung NSC(78;0.0931)|all_lung(78;0.163)		BRCA - Breast invasive adenocarcinoma(143;0.0745)			GCAGCAGCCTCCTTGGAAAGAC	0.441			T	MAML2	salivary gland mucoepidermoid								16	69					0	0	0.004672	0	0
CHD2	1106	broad.mit.edu	37	15	93486111	93486111	+	Missense_Mutation	SNP	A	T	T	rs145479816		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:93486111A>T	uc002bsp.2	+	9	1440	c.865A>T	c.(865-867)AAT>TAT	p.N289Y	CHD2_uc002bsm.1_Missense_Mutation_p.N289Y|CHD2_uc002bsn.2_Missense_Mutation_p.N289Y|CHD2_uc002bso.1_Missense_Mutation_p.N289Y|CHD2_uc010urb.1_Missense_Mutation_p.N302Y|CHD2_uc010bof.1_RNA	NM_001271	NP_001262	O14647	CHD2_HUMAN	chromodomain helicase DNA binding protein 2	289	Chromo 1.				regulation of transcription from RNA polymerase II promoter	nucleus	ATP binding|ATP-dependent DNA helicase activity|DNA binding	p.N289Y(1)		ovary(1)|skin(1)	2	Lung NSC(78;0.00976)|all_lung(78;0.016)		BRCA - Breast invasive adenocarcinoma(143;0.0282)|OV - Ovarian serous cystadenocarcinoma(32;0.0814)			GATTGAAGCTAATGGCGACCC	0.428													16	29					0	0	0.006122	0	0
MCTP2	55784	broad.mit.edu	37	15	94928667	94928667	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:94928667C>T	uc002btj.2	+	13	1766	c.1701C>T	c.(1699-1701)ATC>ATT	p.I567I	MCTP2_uc002bti.2_Silent_p.I567I|MCTP2_uc010boj.2_Silent_p.I296I|MCTP2_uc010bok.2_Silent_p.I567I|MCTP2_uc002btk.3_Silent_p.I155I|MCTP2_uc002btl.2_Silent_p.I155I	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	567	C2 3.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			TTAAAGATATCCATGATGTTT	0.368													56	55					0	0	0.003610	0	0
SYNM	23336	broad.mit.edu	37	15	99670365	99670365	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:99670365G>A	uc002bup.2	+	6	1920	c.1800G>A	c.(1798-1800)GTG>GTA	p.V600V	SYNM_uc002buo.2_Silent_p.V600V|SYNM_uc002buq.2_Intron	NM_145728	NP_663780	O15061	SYNEM_HUMAN	desmuslin isoform A	600	Tail.				intermediate filament cytoskeleton organization	adherens junction|costamere|intermediate filament|neurofilament cytoskeleton	intermediate filament binding|structural constituent of cytoskeleton|structural constituent of muscle|vinculin binding			ovary(3)|central_nervous_system(1)	4						AGACGCCTGTGAAGGATGCTG	0.562													21	22					0	0	0.002780	0	0
C15orf51	196968	broad.mit.edu	37	15	100331320	100331320	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:100331320G>A	uc010urx.1	-	5		c.2872C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						GTGCTCACTGGGATTTTGCTC	0.577													10	39					0	0	0.000978	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100871156	100871156	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:100871156G>A	uc002bvv.1	-	3	633	c.554C>T	c.(553-555)TCC>TTC	p.S185F	ADAMTS17_uc002bvx.1_5'UTR	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	185					proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		GGGGGTCAAGGACCATTTGCG	0.582													27	37					0	0	0.006320	0	0
WDR90	197335	broad.mit.edu	37	16	700291	700291	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:700291T>G	uc002cii.1	+	4	371	c.317T>G	c.(316-318)TTC>TGC	p.F106C	WDR90_uc002cig.1_Missense_Mutation_p.F106C|WDR90_uc002cih.1_Missense_Mutation_p.F106C|WDR90_uc002cij.1_RNA	NM_145294	NP_660337	Q96KV7	WDR90_HUMAN	WD repeat domain 90	106										ovary(1)	1		Hepatocellular(780;0.0218)				TCCAACCTCTTCAAGGAGTTT	0.612													70	104					0	0	0.003610	0	0
FBXL16	146330	broad.mit.edu	37	16	747067	747067	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:747067C>T	uc002cjc.2	-	3	542	c.339G>A	c.(337-339)GAG>GAA	p.E113E	FBXL16_uc002cja.2_5'Flank|FBXL16_uc002cjb.2_5'Flank	NM_153350	NP_699181	Q8N461	FXL16_HUMAN	F-box and leucine-rich repeat protein 16	113	F-box.										0		Hepatocellular(780;0.0218)				GCACACACTTCTCGCAGGCCG	0.662													16	11					0	0	0.004990	0	0
CLCN7	1186	broad.mit.edu	37	16	1505732	1505732	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:1505732G>A	uc002clv.2	-	11	1091	c.981C>T	c.(979-981)ATC>ATT	p.I327I	CLCN7_uc002clw.2_Silent_p.I303I	NM_001287	NP_001278	P51798	CLCN7_HUMAN	chloride channel 7 isoform a	327	Helical; (By similarity).					integral to membrane|lysosomal membrane	antiporter activity|ATP binding|voltage-gated chloride channel activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Hepatocellular(780;0.0893)				AGGAACTTACGATCCTCCAGG	0.637													7	41					0	0	0.004482	0	0
ABCA3	21	broad.mit.edu	37	16	2376255	2376255	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:2376255C>T	uc002cpy.1	-	5	787	c.75G>A	c.(73-75)ACG>ACA	p.T25T	ABCA3_uc010bsk.1_Silent_p.T25T|ABCA3_uc010bsl.1_Silent_p.T25T|ABCA3_uc002cpz.1_Silent_p.T25T	NM_001089	NP_001080	Q99758	ABCA3_HUMAN	ATP-binding cassette, sub-family A member 3	25	Helical; (Potential).				response to drug	integral to membrane|lamellar body|membrane fraction|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			breast(5)|ovary(5)|central_nervous_system(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	16		Ovarian(90;0.17)				GTTCCAGGACCGTCACCAGGA	0.567													5	41					0	0	0.000602	0	0
FLYWCH1	84256	broad.mit.edu	37	16	2987337	2987337	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:2987337C>T	uc002csd.2	+	7	2092	c.1729C>T	c.(1729-1731)CTG>TTG	p.L577L	FLYWCH1_uc002csb.2_Silent_p.L576L|FLYWCH1_uc002csc.2_Silent_p.L576L|FLYWCH1_uc010bsv.2_Silent_p.L301L|FLYWCH1_uc002cse.2_Silent_p.L32L	NM_032296	NP_115672	Q4VC44	FWCH1_HUMAN	FLYWCH-type zinc finger 1 isoform a	577						nucleus	DNA binding|metal ion binding				0						CCTGGAGGCCCTGCGGCAGCG	0.736													5	6					0	0	0.001168	0	0
ZSCAN10	84891	broad.mit.edu	37	16	3142768	3142768	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:3142768C>T	uc002ctv.1	-	1	94	c.6G>A	c.(4-6)GGG>GGA	p.G2G	ZSCAN10_uc002cty.1_Intron|ZSCAN10_uc002ctw.1_Missense_Mutation_p.A10T|ZSCAN10_uc002ctx.1_5'UTR	NM_032805	NP_116194	Q96SZ4	ZSC10_HUMAN	zinc finger and SCAN domain containing 10	2	SCAN box.				negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1						ACGCCCGTGGCCCCATGTCCT	0.667													3	13					0	0	0.004672	0	0
OR2C1	4993	broad.mit.edu	37	16	3406326	3406326	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:3406326C>T	uc002cuw.1	+	1	438	c.386C>T	c.(385-387)CCC>CTC	p.P129L		NM_012368	NP_036500	O95371	OR2C1_HUMAN	olfactory receptor, family 2, subfamily C,	129	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						GTGTGCCGGCCCCTCCGCTAC	0.607													16	11					0	0	0.007413	0	0
NLRC3	197358	broad.mit.edu	37	16	3613758	3613758	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:3613758G>T	uc010btn.2	-	5	1591	c.1180C>A	c.(1180-1182)CGC>AGC	p.R394S		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	394	NACHT.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						ACCATCTTGCGGCCACCATGG	0.582													8	7					0.000157383	0.000220379	0.003080	1	0
BTBD12	84464	broad.mit.edu	37	16	3633161	3633161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:3633161G>A	uc002cvp.2	-	14	5717	c.5090C>T	c.(5089-5091)CCA>CTA	p.P1697L		NM_032444	NP_115820	Q8IY92	SLX4_HUMAN	BTB (POZ) domain containing 12	1697	Interaction with PLK1 and TERF2-TERF2IP.|Interaction with SLX1.				DNA double-strand break processing involved in repair via single-strand annealing|double-strand break repair via homologous recombination|nucleotide-excision repair	Slx1-Slx4 complex	enzyme activator activity|protein binding				0						TTGAGAGGCTGGGATCTGGGC	0.592								Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia				15	61					0	0	0.003163	0	0
CREBBP	1387	broad.mit.edu	37	16	3819272	3819272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:3819272G>A	uc002cvv.2	-	15	3167	c.2963C>T	c.(2962-2964)CCA>CTA	p.P988L	CREBBP_uc002cvw.2_Missense_Mutation_p.P950L	NM_004380	NP_004371	Q92793	CBP_HUMAN	CREB binding protein isoform a	988					cellular lipid metabolic process|homeostatic process|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|protein complex assembly|response to hypoxia	cytoplasm|nuclear body	histone acetyltransferase activity|MyoD binding|p53 binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(97)|ovary(14)|lung(6)|skin(6)|breast(2)|NS(1)|pancreas(1)	127		Ovarian(90;0.0266)		OV - Ovarian serous cystadenocarcinoma(1;3.54e-05)		GTCAGGTCCTGGCTGCTGGGA	0.572			T|N|F|Mis|O	MLL|MORF|RUNXBP2	ALL|AML|DLBCL|B-NHL 		Rubinstein-Taybi syndrome		Rubinstein-Taybi_syndrome				23	26					0	0	0.002299	0	0
CORO7	79585	broad.mit.edu	37	16	4393215	4393215	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:4393215C>G	uc002cwf.2	-	28	3293	c.2850G>C	c.(2848-2850)GAG>GAC	p.E950D	CORO7_uc002cwe.2_RNA|TIMM16_uc002cwd.2_Missense_Mutation_p.E27D	NM_024535	NP_078811	P57737	CORO7_HUMAN	coronin 7	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						cytoplasmic membrane-bounded vesicle|cytosol|Golgi membrane|integral to membrane of membrane fraction|soluble fraction					0						TACCTGCAAACTCCTGCCGCA	0.637													7	16					0	0	0.003080	0	0
SEC14L5	9717	broad.mit.edu	37	16	5053420	5053420	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:5053420T>A	uc002cye.2	+	11	1328	c.1148T>A	c.(1147-1149)CTA>CAA	p.L383Q		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	383	CRAL-TRIO.					integral to membrane|intracellular	transporter activity				0						ACCTGCCTGCTAGACCTGGAG	0.632													8	14					0	0	0.008291	0	0
SEC14L5	9717	broad.mit.edu	37	16	5057422	5057422	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:5057422G>A	uc002cye.2	+	13	1687	c.1507G>A	c.(1507-1509)GAC>AAC	p.D503N		NM_014692	NP_055507	O43304	S14L5_HUMAN	SEC14-like 5	503						integral to membrane|intracellular	transporter activity				0						GGAGCACACGGACCAGCTGTG	0.642													13	11					0	0	0.002450	0	0
C16orf68	79091	broad.mit.edu	37	16	8738530	8738530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:8738530C>T	uc002cyz.2	+	10	1403	c.1127C>T	c.(1126-1128)CCC>CTC	p.P376L	C16orf68_uc002cza.2_Missense_Mutation_p.P320L|C16orf68_uc002czb.2_5'Flank	NM_024109	NP_077014	Q9BUU2	MET22_HUMAN	hypothetical protein LOC79091	376							methyltransferase activity				0						GTGGTGGAGCCCGTGGAGGCC	0.617													21	41					0	0	0.001523	0	0
GRIN2A	2903	broad.mit.edu	37	16	9916248	9916248	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:9916248G>A	uc002czo.3	-	10	2589	c.2041C>T	c.(2041-2043)CGA>TGA	p.R681*	GRIN2A_uc010uym.1_Nonsense_Mutation_p.R681*|GRIN2A_uc010uyn.1_Nonsense_Mutation_p.R524*|GRIN2A_uc002czr.3_Nonsense_Mutation_p.R681*	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	681	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTCCCAAATCGAAAAGGTGGG	0.289													19	35					0	0	0.007413	0	0
GRIN2A	2903	broad.mit.edu	37	16	10032408	10032408	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:10032408C>T	uc002czo.3	-	3	963	c.415G>A	c.(415-417)GAT>AAT	p.D139N	GRIN2A_uc010uym.1_Missense_Mutation_p.D139N|GRIN2A_uc010uyn.1_5'UTR|GRIN2A_uc002czr.3_Missense_Mutation_p.D139N	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	139	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GACGTCGGATCCTGCCAGTGA	0.463													6	25					0	0	0.001168	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10524750	10524750	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:10524750C>A	uc002czu.2	+	3	500	c.273C>A	c.(271-273)TTC>TTA	p.F91L	ATF7IP2_uc002czv.2_Missense_Mutation_p.F91L|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Missense_Mutation_p.F91L|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	91					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GTAAAGTATTCTCTCAGAATT	0.333													21	23					2.89027e-11	4.07295e-11	0.002299	1	0
CPPED1	55313	broad.mit.edu	37	16	12798701	12798701	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:12798701G>A	uc002dca.3	-	3	606	c.495C>T	c.(493-495)TCC>TCT	p.S165S	CPPED1_uc002dcb.3_Intron|CPPED1_uc002dbz.3_RNA	NM_018340	NP_060810	Q9BRF8	CPPED_HUMAN	calcineurin-like phosphoesterase domain	165							hydrolase activity|metal ion binding				0						CGTAGAACTGGGAGTTGAGGA	0.637													21	14					0	0	0.008871	0	0
ABCC1	4363	broad.mit.edu	37	16	16177228	16177228	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:16177228C>T	uc010bvi.2	+	17	2296	c.2121C>T	c.(2119-2121)TCC>TCT	p.S707S	ABCC1_uc010bvj.2_Intron|ABCC1_uc010bvk.2_Silent_p.S707S|ABCC1_uc010bvl.2_Silent_p.S707S|ABCC1_uc010bvm.2_Intron|ABCC1_uc002del.3_Silent_p.S591S	NM_004996	NP_004987	P33527	MRP1_HUMAN	ATP-binding cassette, sub-family C, member 1	707	ABC transporter 1.|Cytoplasmic.				hormone biosynthetic process|leukotriene biosynthetic process|prostanoid metabolic process|response to drug	Golgi apparatus|integral to plasma membrane|membrane fraction|nucleus	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(4)	4					Daunorubicin(DB00694)|Glibenclamide(DB01016)|Probenecid(DB01032)|Saquinavir(DB01232)|Sulfinpyrazone(DB01138)	CTTAGGGCTCCGTGGCCTATG	0.527													15	27					0	0	0.007413	0	0
ABCC6	368	broad.mit.edu	37	16	16267254	16267254	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:16267254T>A	uc002den.3	-	21	2711	c.2674A>T	c.(2674-2676)AAG>TAG	p.K892*	ABCC6_uc010bvo.2_RNA	NM_001171	NP_001162	O95255	MRP6_HUMAN	ATP-binding cassette, sub-family C, member 6	892	Cytoplasmic (By similarity).				response to drug|visual perception	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			skin(2)|ovary(1)	3				UCEC - Uterine corpus endometrioid carcinoma (3;0.123)		GGGACTGACTTGATGGACCTG	0.537													30	28					0	0	0.002836	0	0
TMC7	79905	broad.mit.edu	37	16	19033066	19033066	+	Silent	SNP	G	A	A	rs111625310		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:19033066G>A	uc002dfq.2	+	4	706	c.576G>A	c.(574-576)ACG>ACA	p.T192T	TMC7_uc010vao.1_Silent_p.T192T|TMC7_uc002dfp.2_Silent_p.T192T|TMC7_uc010vap.1_Silent_p.T82T	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	192	Cytoplasmic (Potential).					integral to membrane				skin(2)|ovary(1)	3						TCTTACTCACGAAATACAAGA	0.418													28	25					0	0	0.005443	0	0
SYT17	51760	broad.mit.edu	37	16	19236122	19236122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:19236122C>T	uc002dfw.2	+	7	1521	c.1190C>T	c.(1189-1191)CCC>CTC	p.P397L	SYT17_uc002dfx.2_Missense_Mutation_p.P336L|SYT17_uc002dfy.2_Missense_Mutation_p.P393L|SYT17_uc002dfv.1_Missense_Mutation_p.P336L	NM_016524	NP_057608	Q9BSW7	SYT17_HUMAN	B/K protein	397	C2 2.					membrane|synaptic vesicle	transporter activity			ovary(1)	1						TTCAAAGTTCCCCAAGAAGAA	0.453													27	49					0	0	0.007291	0	0
ACSM5	54988	broad.mit.edu	37	16	20422863	20422863	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:20422863C>T	uc002dhe.2	+	2	204	c.57C>T	c.(55-57)TTC>TTT	p.F19F	ACSM5_uc002dhd.1_Silent_p.F19F	NM_017888	NP_060358	Q6NUN0	ACSM5_HUMAN	acyl-CoA synthetase medium-chain family member 5	19					fatty acid metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			ovary(2)	2						CCAGGGCATTCTGTGGGTCTC	0.572													17	19					0	0	0.006122	0	0
DNAH3	55567	broad.mit.edu	37	16	20975320	20975320	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:20975320G>A	uc010vbe.1	-	53	9886	c.9886C>T	c.(9886-9888)CCA>TCA	p.P3296S	DNAH3_uc010vbd.1_Missense_Mutation_p.P731S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3296					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACAGCCACTGGCTTGTAGCCC	0.483													40	45					0	0	0.007835	0	0
DNAH3	55567	broad.mit.edu	37	16	20976520	20976520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:20976520G>A	uc010vbe.1	-	53	8686	c.8686C>T	c.(8686-8688)CGC>TGC	p.R2896C	DNAH3_uc010vbd.1_Missense_Mutation_p.R331C	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2896	Stalk (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TTGGCCACGCGATCGTACACC	0.567													30	76					0	0	0.002096	0	0
DNAH3	55567	broad.mit.edu	37	16	21011706	21011706	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:21011706G>A	uc010vbe.1	-	43	6261	c.6261C>T	c.(6259-6261)TTC>TTT	p.F2087F		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	2087	AAA 3 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GGTGGAGAAGGAAGTTGTTGG	0.493													22	20					0	0	0.002299	0	0
DNAH3	55567	broad.mit.edu	37	16	21098222	21098222	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:21098222G>A	uc010vbe.1	-	19	2825	c.2825C>T	c.(2824-2826)CCC>CTC	p.P942L		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	942	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		ACTGAGGATGGGAATGTACTG	0.512													41	160					0	0	0.003610	0	0
OTOA	146183	broad.mit.edu	37	16	21698771	21698771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:21698771G>A	uc002djh.2	+	7	438	c.437G>A	c.(436-438)CGA>CAA	p.R146Q	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.R67Q	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	146					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GGAGAGATTCGAGAACGAGCC	0.522													34	39					0	0	0.006999	0	0
TNRC6A	27327	broad.mit.edu	37	16	24802181	24802182	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:24802181_24802182CC>TT	uc002dmm.2	+	6	2332_2333	c.2218_2219CC>TT	c.(2218-2220)CCT>TTT	p.P740F	TNRC6A_uc010bxs.2_Missense_Mutation_p.P487F|TNRC6A_uc010vcc.1_Missense_Mutation_p.P487F|TNRC6A_uc002dmn.2_Missense_Mutation_p.P487F|TNRC6A_uc002dmo.2_Missense_Mutation_p.P487F	NM_014494	NP_055309	Q8NDV7	TNR6A_HUMAN	trinucleotide repeat containing 6A	740	Sufficient for interaction with EIF2C2.|Sufficient for interaction with EIF2C1 and EIF2C4.				negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|micro-ribonucleoprotein complex	nucleotide binding|RNA binding			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0394)		AGAAACATCACCTAGAGGGGAA	0.47													9	19					0	0	0.004672	0	0
SLC5A11	115584	broad.mit.edu	37	16	24909426	24909426	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:24909426C>T	uc002dmu.2	+	10	1234	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	SLC5A11_uc002dms.2_Silent_p.F270F|SLC5A11_uc010vcd.1_Silent_p.F299F|SLC5A11_uc002dmt.2_Missense_Mutation_p.P202S|SLC5A11_uc010vce.1_Silent_p.F264F|SLC5A11_uc010bxt.2_Silent_p.F270F	NM_052944	NP_443176	Q8WWX8	SC5AB_HUMAN	solute carrier family 5 (sodium/glucose	334	Extracellular (Potential).				apoptosis|carbohydrate transport|sodium ion transport	integral to membrane|plasma membrane	polyol transmembrane transporter activity|symporter activity			ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0365)		GCATCCTCTTCCCAGGTGAGA	0.493													39	31					0	0	0.006999	0	0
IL21R	50615	broad.mit.edu	37	16	27460580	27460580	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:27460580G>A	uc002doq.1	+	9	1826	c.1593G>A	c.(1591-1593)TCG>TCA	p.S531S	IL21R_uc002dor.1_Silent_p.S531S|IL21R_uc002dos.1_Silent_p.S531S|uc002dot.2_RNA	NM_181078	NP_851564	Q9HBE5	IL21R_HUMAN	interleukin 21 receptor precursor	531	Cytoplasmic (Potential).				natural killer cell activation	integral to membrane	interleukin-21 receptor activity			ovary(2)|lung(1)|breast(1)	4						CGCCACTTTCGAGCCCTGGAC	0.652			T	BCL6	NHL								9	19					0	0	0.000978	0	0
GTF3C1	2975	broad.mit.edu	37	16	27475784	27475784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:27475784G>A	uc002dov.1	-	34	5769	c.5729C>T	c.(5728-5730)CCA>CTA	p.P1910L	GTF3C1_uc002dou.2_Missense_Mutation_p.P1910L	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1910						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5						GGGTGGAGATGGGGCCTGGGC	0.642													40	34					0	0	0.007835	0	0
GTF3C1	2975	broad.mit.edu	37	16	27497466	27497466	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:27497466G>A	uc002dov.1	-	24	3750	c.3710C>T	c.(3709-3711)CCA>CTA	p.P1237L	GTF3C1_uc002dou.2_Missense_Mutation_p.P1237L	NM_001520	NP_001511	Q12789	TF3C1_HUMAN	general transcription factor IIIC, polypeptide	1237						transcription factor TFIIIC complex	DNA binding|protein binding	p.P1237S(1)		ovary(2)|pancreas(1)|breast(1)|skin(1)	5						TTTTTCTCCTGGGAACTCTCC	0.562													59	68					0	0	0.003610	0	0
XPO6	23214	broad.mit.edu	37	16	28118941	28118941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:28118941G>A	uc002dpa.1	-	18	2900	c.2399C>T	c.(2398-2400)TCG>TTG	p.S800L	XPO6_uc002dpb.1_Missense_Mutation_p.S786L|XPO6_uc010vcp.1_Missense_Mutation_p.S800L	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	800					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						GGACTCCCCCGAGATATTCTC	0.488													27	35					0	0	0.006320	0	0
CLN3	1201	broad.mit.edu	37	16	28488892	28488892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:28488892G>A	uc002dpo.2	-	15	1585	c.1262C>T	c.(1261-1263)TCC>TTC	p.S421F	uc010vct.1_Intron|CLN3_uc002dpl.2_Missense_Mutation_p.S343F|CLN3_uc010vcu.1_Missense_Mutation_p.S321F|CLN3_uc002dpn.2_Missense_Mutation_p.S322F|CLN3_uc002dpm.2_Missense_Mutation_p.S367F|CLN3_uc010vcv.1_Missense_Mutation_p.S397F|CLN3_uc010byd.2_Missense_Mutation_p.S324F|CLN3_uc002dpp.2_Missense_Mutation_p.S421F|CLN3_uc002dpt.1_Missense_Mutation_p.S321F|CLN3_uc002dpq.1_Missense_Mutation_p.S373F|CLN3_uc010bye.1_Missense_Mutation_p.S404F|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Missense_Mutation_p.S294F|CLN3_uc002dpu.1_Missense_Mutation_p.S319F	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	421	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						CCCCGACAGGGAGATCCCCAG	0.607													24	30					0	0	0.003330	0	0
SULT1A1	6817	broad.mit.edu	37	16	28617456	28617456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:28617456C>T	uc002dqi.2	-	6	1169	c.696G>A	c.(694-696)ATG>ATA	p.M232I	uc010vct.1_Intron|SULT1A1_uc002dqj.2_Missense_Mutation_p.M232I|SULT1A1_uc002dqk.2_Missense_Mutation_p.M232I|SULT1A1_uc002dql.2_Missense_Mutation_p.M232I|SULT1A1_uc002dqm.2_Missense_Mutation_p.M154I|SULT1A1_uc002dqn.2_Missense_Mutation_p.M323I|SULT1A1_uc002dqo.2_Missense_Mutation_p.M232I|SULT1A1_uc002dqp.2_Missense_Mutation_p.M232I	NM_177534	NP_803878	P50225	ST1A1_HUMAN	sulfotransferase family, cytosolic, 1A,	232					3'-phosphoadenosine 5'-phosphosulfate metabolic process|catecholamine metabolic process|flavonoid metabolic process|steroid metabolic process|sulfation|xenobiotic metabolic process	cytosol	aryl sulfotransferase activity|flavonol 3-sulfotransferase activity				0						GGTTCTTCTTCATCTCCTTGA	0.567													15	83					0	0	0.004990	0	0
CD19	930	broad.mit.edu	37	16	28948809	28948809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:28948809C>T	uc002drs.2	+	10	1399	c.1337C>T	c.(1336-1338)CCC>CTC	p.P446L	uc010vct.1_Intron|CD19_uc010byo.1_Missense_Mutation_p.P446L	NM_001770	NP_001761	P15391	CD19_HUMAN	CD19 antigen precursor	446	Cytoplasmic (Potential).				cellular defense response	external side of plasma membrane|integral to plasma membrane	protein binding|receptor signaling protein activity			ovary(2)|central_nervous_system(1)	3						GAGGATGAGCCCCTGGGTCCT	0.607													28	35					0	0	0.001786	0	0
C16orf92	146378	broad.mit.edu	37	16	30035536	30035536	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:30035536G>A	uc002dvs.2	+	4	408	c.387G>A	c.(385-387)CAG>CAA	p.Q129Q	uc002dtf.2_Intron|BOLA2_uc010bzb.1_Intron|C16orf92_uc002dvr.2_Silent_p.Q107Q	NM_001109660	NP_001103130	Q96LL3	CP092_HUMAN	hypothetical protein LOC146378 isoform 2	129						integral to membrane					0						GAAACTTCCAGAAAGGGGCCT	0.587													11	14					0	0	0.001855	0	0
ITGAL	3683	broad.mit.edu	37	16	30518142	30518142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:30518142C>T	uc002dyi.3	+	21	2649	c.2473C>T	c.(2473-2475)CCG>TCG	p.P825S	ITGAL_uc002dyj.3_Missense_Mutation_p.P741S|ITGAL_uc010vev.1_Intron	NM_002209	NP_002200	P20701	ITAL_HUMAN	integrin alpha L isoform a precursor	825	Extracellular (Potential).				blood coagulation|heterophilic cell-cell adhesion|inflammatory response|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response|T cell activation via T cell receptor contact with antigen bound to MHC molecule on antigen presenting cell	integrin complex	cell adhesion molecule binding|receptor activity			ovary(3)|lung(3)|central_nervous_system(3)|breast(1)	10					Efalizumab(DB00095)	GCACTTCCCCCCGGGACTCTC	0.597													26	85					0	0	0.002096	0	0
PHKG2	5261	broad.mit.edu	37	16	30764754	30764754	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:30764754C>T	uc002dzk.1	+	6	525	c.432C>T	c.(430-432)CTC>CTT	p.L144L	PHKG2_uc002dzi.1_Silent_p.L144L|PHKG2_uc002dzj.1_Silent_p.L42L	NM_000294	NP_000285	P15735	PHKG2_HUMAN	phosphorylase kinase, gamma 2 (testis)	144	Protein kinase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol	ATP binding|calmodulin binding|phosphorylase kinase activity			ovary(1)	1			Colorectal(24;0.198)			TGAGCTTTCTCCATGCCAACA	0.562													17	16					0	0	0.004990	0	0
ORAI3	93129	broad.mit.edu	37	16	30964558	30964558	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:30964558T>C	uc002eac.2	+	2	487	c.281T>C	c.(280-282)CTG>CCG	p.L94P		NM_152288	NP_689501	Q9BRQ5	ORAI3_HUMAN	ORAI calcium release-activated calcium modulator	94						integral to membrane	protein binding				0						CCACCAGGCCTGCTGGTGGCC	0.597											OREG0023742	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	48					0	0	0.008291	0	0
MYLK3	91807	broad.mit.edu	37	16	46746678	46746678	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:46746678G>A	uc002eei.3	-	10	2112	c.1996C>T	c.(1996-1998)CGA>TGA	p.R666*	MYLK3_uc010vge.1_Nonsense_Mutation_p.R325*	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	666	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				AGCTTCTCTCGAGGCTTGTAC	0.552													7	26					0	0	0.003080	0	0
MYLK3	91807	broad.mit.edu	37	16	46763013	46763013	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:46763013G>A	uc002eei.3	-	7	1811	c.1695C>T	c.(1693-1695)AAC>AAT	p.N565N	MYLK3_uc010vge.1_Silent_p.N224N|MYLK3_uc002eej.1_Silent_p.N224N	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	565	Protein kinase.				cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				GGCTGAGCTGGTTCATGATGT	0.552													33	42					0	0	0.004289	0	0
MYLK3	91807	broad.mit.edu	37	16	46771661	46771661	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:46771661C>T	uc002eei.3	-	3	1079	c.963G>A	c.(961-963)CAG>CAA	p.Q321Q	MYLK3_uc010vge.1_Intron|MYLK3_uc002eej.1_5'UTR	NM_182493	NP_872299	Q32MK0	MYLK3_HUMAN	myosin light chain kinase 3	321					cardiac myofibril assembly|cellular response to interleukin-1|positive regulation of sarcomere organization|regulation of vascular permeability involved in acute inflammatory response|sarcomere organization|sarcomerogenesis	cytosol	ATP binding|calmodulin-dependent protein kinase activity|myosin light chain kinase activity			stomach(2)|skin(2)|large_intestine(1)|ovary(1)|central_nervous_system(1)	7		all_cancers(37;0.00023)|all_epithelial(9;0.000543)|all_lung(18;0.00585)|Lung NSC(13;0.0496)|Breast(268;0.116)				TTGCCCTGGCCTGGGCTGGCA	0.667													11	30					0	0	0.001368	0	0
GPT2	84706	broad.mit.edu	37	16	46952658	46952658	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:46952658C>T	uc002eel.2	+	8	1120	c.1026C>T	c.(1024-1026)GGC>GGT	p.G342G	GPT2_uc002eem.2_Silent_p.G242G	NM_133443	NP_597700	Q8TD30	ALAT2_HUMAN	glutamic pyruvate transaminase 2 isoform 1	342					2-oxoglutarate metabolic process|cellular amino acid biosynthetic process|L-alanine metabolic process	mitochondrial matrix	L-alanine:2-oxoglutarate aminotransferase activity|pyridoxal phosphate binding			ovary(1)|skin(1)	2		all_cancers(37;0.0276)|all_epithelial(9;0.0498)|all_lung(18;0.0522)			L-Alanine(DB00160)|L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	CCTCCAAGGGCTACATGGGCG	0.637													7	38					0	0	0.001984	0	0
ABCC12	94160	broad.mit.edu	37	16	48130780	48130780	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:48130780C>T	uc002efc.1	-	22	3418	c.3072G>A	c.(3070-3072)TGG>TGA	p.W1024*	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	1024	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TCAGCGCAAACCACCTGAGAG	0.468													18	64					0	0	0.002299	0	0
ADCY7	113	broad.mit.edu	37	16	50349029	50349029	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:50349029G>A	uc002egd.1	+	24	3344	c.3076G>A	c.(3076-3078)GGA>AGA	p.G1026R		NM_001114	NP_001105	P51828	ADCY7_HUMAN	adenylate cyclase 7	1026	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to ethanol|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of cAMP biosynthetic process|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			skin(1)	1		all_cancers(37;0.0127)		GBM - Glioblastoma multiforme(240;0.195)	Bromocriptine(DB01200)	GGAAAGCACTGGAGAACTTGG	0.507													25	19					0	0	0.004656	0	0
IRX6	79190	broad.mit.edu	37	16	55361545	55361546	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:55361545_55361546CC>TT	uc002ehy.2	+	4	994_995	c.461_462CC>TT	c.(460-462)ACC>ATT	p.T154I	IRX6_uc002ehx.2_Missense_Mutation_p.T154I|IRX6_uc010ccb.1_RNA	NM_024335	NP_077311	P78412	IRX6_HUMAN	iroquois homeobox protein 6	154	Homeobox; TALE-type.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(5)|ovary(1)	6						AAGAACGCGACCCGGGAGACCA	0.569													7	19					0	0	0.004672	0	0
CES1	1066	broad.mit.edu	37	16	55862792	55862792	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:55862792G>A	uc002eim.2	-	2	252	c.144C>T	c.(142-144)GCC>GCT	p.A48A	CES1_uc002eil.2_Silent_p.A49A|CES1_uc002ein.2_Silent_p.A48A	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	48					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	CCAGGAAAATGGCCACAGGCT	0.572													10	38					0	0	0.006214	0	0
CES7	221223	broad.mit.edu	37	16	55893542	55893542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:55893542C>T	uc002eip.2	-	8	1122	c.973G>A	c.(973-975)GAT>AAT	p.D325N	CES7_uc002eio.2_Missense_Mutation_p.D325N|CES7_uc002eiq.2_Missense_Mutation_p.D86N|CES7_uc002eir.2_Missense_Mutation_p.D219N	NM_001143685	NP_001137157	Q6NT32	EST5A_HUMAN	carboxylesterase 7 isoform 1	325						extracellular region	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.229)|Epithelial(162;0.231)		GACAATAGATCTAGAGGCTCA	0.398													14	15					0	0	0.001855	0	0
GNAO1	2775	broad.mit.edu	37	16	56370700	56370700	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:56370700G>A	uc002eit.3	+	6	1548	c.651G>A	c.(649-651)GAG>GAA	p.E217E	GNAO1_uc002eiu.3_Silent_p.E217E	NM_138736	NP_620073	P09471	GNAO_HUMAN	guanine nucleotide binding protein, alpha	217					dopamine receptor signaling pathway|G-protein signaling, coupled to cAMP nucleotide second messenger|muscle contraction	heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|metabotropic serotonin receptor binding|signal transducer activity			lung(1)|breast(1)	2		all_neural(199;0.159)				ATTGCTTCGAGGACGTCACGG	0.627													6	10					0	0	0.001168	0	0
SLC12A3	6559	broad.mit.edu	37	16	56901088	56901088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:56901088C>T	uc010ccm.2	+	2	418	c.389C>T	c.(388-390)CCC>CTC	p.P130L	SLC12A3_uc002ekd.3_Missense_Mutation_p.P130L|SLC12A3_uc010ccn.2_Missense_Mutation_p.P129L	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	130	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	GAGAAGAACCCCGAGGAGCCA	0.657													5	5					0	0	0.000602	0	0
SLC12A3	6559	broad.mit.edu	37	16	56947280	56947280	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:56947280G>A	uc010ccm.2	+	26	3058	c.3029G>A	c.(3028-3030)GGA>GAA	p.G1010E	SLC12A3_uc002ekd.3_Missense_Mutation_p.G1019E|SLC12A3_uc010ccn.2_Missense_Mutation_p.G1018E	NM_001126108	NP_001119580	P55017	S12A3_HUMAN	solute carrier family 12, member 3 isoform 3	1010	Cytoplasmic (Potential).				sodium ion transmembrane transport	apical plasma membrane|integral to plasma membrane|membrane fraction	sodium:chloride symporter activity			ovary(2)|breast(1)	3					Bendroflumethiazide(DB00436)|Benzthiazide(DB00562)|Chlorothiazide(DB00880)|Diazoxide(DB01119)|Hydrochlorothiazide(DB00999)|Metolazone(DB00524)|Polythiazide(DB01324)|Quinethazone(DB01325)	CTGATCCGAGGAAACCAGGAA	0.552													47	52					0	0	0.003610	0	0
NLRC5	84166	broad.mit.edu	37	16	57060583	57060583	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:57060583C>T	uc002ekk.1	+	6	1953	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	NLRC5_uc010ccq.1_RNA|NLRC5_uc002ekn.2_Silent_p.F381F|NLRC5_uc002ekl.2_Silent_p.F381F|NLRC5_uc002ekm.2_Silent_p.F381F|NLRC5_uc010ccr.1_RNA	NM_032206	NP_115582	Q86WI3	NLRC5_HUMAN	nucleotide-binding oligomerization domains 27	576					defense response to virus|innate immune response|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|negative regulation of type I interferon-mediated signaling pathway|positive regulation of interferon-gamma-mediated signaling pathway|positive regulation of MHC class I biosynthetic process|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|regulation of kinase activity	cytosol|nucleus	ATP binding|protein binding|RNA polymerase II core promoter sequence-specific DNA binding			ovary(4)|skin(2)|breast(1)	7		all_neural(199;0.225)				GCCGCCCCTTCCTTAGCCACC	0.637													25	27					0	0	0.005443	0	0
CPNE2	221184	broad.mit.edu	37	16	57153179	57153179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:57153179C>T	uc002eks.1	+	6	809	c.580C>T	c.(580-582)CAC>TAC	p.H194Y	CPNE2_uc010cct.1_Missense_Mutation_p.H220Y|CPNE2_uc010ccu.1_Missense_Mutation_p.H194Y	NM_152727	NP_689940	Q96FN4	CPNE2_HUMAN	copine II	194	C2 2.									central_nervous_system(1)|skin(1)	2		all_neural(199;0.224)				GATGCTGGTCCACAGGACTGA	0.592													19	22					0	0	0.002780	0	0
CDH8	1006	broad.mit.edu	37	16	61687684	61687684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:61687684G>A	uc002eog.1	-	12	2480	c.2228C>T	c.(2227-2229)TCC>TTC	p.S743F		NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	743	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		TATCTGAATGGAGTCATATGG	0.498													11	32					0	0	0.008291	0	0
CDH11	1009	broad.mit.edu	37	16	65016088	65016088	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:65016088G>A	uc002eoi.2	-	8	1550	c.1116C>T	c.(1114-1116)ATC>ATT	p.I372I	CDH11_uc010cdn.2_Intron|CDH11_uc002eoj.2_Silent_p.I372I|CDH11_uc010vin.1_Silent_p.I246I|CDH11_uc002eok.1_RNA	NM_001797	NP_001788	P55287	CAD11_HUMAN	cadherin 11, type 2 preproprotein	372	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|ossification|skeletal system development	integral to membrane|plasma membrane	calcium ion binding|protein binding			lung(10)|ovary(3)|skin(1)	14		Ovarian(137;0.0973)		OV - Ovarian serous cystadenocarcinoma(108;0.205)		CTTCTACTGAGATCTTGACGG	0.517			T	USP6	aneurysmal bone cysts					TSP Lung(24;0.17)			43	55					0	0	0.003610	0	0
CDH5	1003	broad.mit.edu	37	16	66424444	66424444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:66424444C>T	uc002eom.3	+	6	1076	c.920C>T	c.(919-921)ACC>ATC	p.T307I	CDH5_uc002eon.1_Missense_Mutation_p.T307I	NM_001795	NP_001786	P33151	CADH5_HUMAN	cadherin 5, type 2 preproprotein	307	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion|regulation of establishment of cell polarity	integral to membrane|membrane fraction	beta-catenin binding|calcium ion binding|ion channel binding|receptor binding			ovary(2)|lung(2)|central_nervous_system(1)|skin(1)	6		Ovarian(137;0.0955)		OV - Ovarian serous cystadenocarcinoma(108;0.107)		GACGCTTTCACCATTGAGACA	0.562													9	31					0	0	0.008291	0	0
CDH16	1014	broad.mit.edu	37	16	66946255	66946255	+	Missense_Mutation	SNP	C	T	T	rs147611353		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:66946255C>T	uc002eql.2	-	12	1511	c.1438G>A	c.(1438-1440)GAG>AAG	p.E480K	CDH16_uc010cdy.2_Missense_Mutation_p.E480K|CDH16_uc002eqm.2_Missense_Mutation_p.E383K	NM_004062	NP_004053	O75309	CAD16_HUMAN	cadherin 16 precursor	480	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|upper_aerodigestive_tract(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0877)|Epithelial(162;0.203)		AAGGCGGGCTCGAGGTCAGCA	0.577													23	32					0	0	0.004656	0	0
LRRC29	26231	broad.mit.edu	37	16	67241580	67241580	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:67241580T>C	uc002esd.2	-	4	1497	c.600A>G	c.(598-600)CAA>CAG	p.Q200Q	LRRC29_uc002ese.2_Silent_p.Q200Q|LRRC29_uc002esf.2_Silent_p.Q200Q|LRRC29_uc002esg.2_Silent_p.Q200Q	NM_012163	NP_036295	Q8WV35	LRC29_HUMAN	F-box and leucine-rich repeat protein 9	200	LRR 7.										0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.000691)|Epithelial(162;0.00462)|all cancers(182;0.0434)		GCAGCTGGGCTTGGAAGCGTC	0.637													14	17					0	0	0.004990	0	0
RANBP10	57610	broad.mit.edu	37	16	67763906	67763906	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:67763906G>A	uc002eud.2	-	8	1049	c.933C>T	c.(931-933)ATC>ATT	p.I311I	RANBP10_uc010ceo.2_Silent_p.I82I|RANBP10_uc010vju.1_Silent_p.I255I|RANBP10_uc010vjv.1_Silent_p.I194I|RANBP10_uc010vjw.1_5'UTR	NM_020850	NP_065901	Q6VN20	RBP10_HUMAN	RAN binding protein 10	311	CTLH.									ovary(1)	1		Acute lymphoblastic leukemia(13;4.34e-06)|all_hematologic(13;0.000643)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.00522)|Epithelial(162;0.025)|all cancers(182;0.157)		GGGTGGTCTCGATGGCCTCGC	0.632													14	19					0	0	0.003163	0	0
NFATC3	4775	broad.mit.edu	37	16	68156670	68156670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:68156670C>T	uc002evo.1	+	2	1094	c.884C>T	c.(883-885)CCT>CTT	p.P295L	NFATC3_uc010vkl.1_5'UTR|NFATC3_uc010vkm.1_5'UTR|NFATC3_uc010vkn.1_5'UTR|NFATC3_uc010vko.1_5'UTR|NFATC3_uc010vkp.1_5'UTR|NFATC3_uc010vkq.1_5'UTR|NFATC3_uc002evl.2_Intron|NFATC3_uc002evk.2_Missense_Mutation_p.P295L|NFATC3_uc002evm.1_Missense_Mutation_p.P295L|NFATC3_uc002evn.1_Missense_Mutation_p.P295L|NFATC3_uc010vkr.1_5'UTR|NFATC3_uc010vks.1_5'UTR|NFATC3_uc010vkt.1_5'UTR|NFATC3_uc010vku.1_5'UTR|NFATC3_uc010vkv.1_5'UTR|NFATC3_uc010vkw.1_5'UTR|NFATC3_uc010vkx.1_5'UTR|NFATC3_uc010vky.1_5'UTR|NFATC3_uc010vkz.1_5'UTR|NFATC3_uc010vla.1_5'UTR|NFATC3_uc010vlb.1_5'UTR|NFATC3_uc010vlc.1_5'UTR	NM_173165	NP_775188	Q12968	NFAC3_HUMAN	nuclear factor of activated T-cells,	295	3 X SP repeats.|3.				inflammatory response|transcription from RNA polymerase II promoter	nucleolus|plasma membrane	DNA binding			upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	3		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0119)|Epithelial(162;0.0452)|all cancers(182;0.24)		TCACCTGTTCCTTCACCTGGT	0.557													11	37					0	0	0.000978	0	0
CDH1	999	broad.mit.edu	37	16	68835619	68835619	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:68835619C>T	uc002ewg.1	+	3	334	c.210C>T	c.(208-210)TCC>TCT	p.S70S	CDH1_uc010vlj.1_RNA|CDH1_uc010cfg.1_Silent_p.S70S	NM_004360	NP_004351	P12830	CADH1_HUMAN	cadherin 1, type 1 preproprotein	70				SL -> P (in Ref. 3; AAA61259).	adherens junction organization|cellular component disassembly involved in apoptosis|cellular response to indole-3-methanol|cellular response to lithium ion|homophilic cell adhesion|negative regulation of cell-cell adhesion|positive regulation of transcription factor import into nucleus|positive regulation of transcription, DNA-dependent|regulation of immune response	actin cytoskeleton|aggresome|apical junction complex|catenin complex|cell-cell adherens junction|endosome|focal adhesion|Golgi apparatus|integral to membrane|internal side of plasma membrane|lateral plasma membrane|perinuclear region of cytoplasm	cell adhesion molecule binding|gamma-catenin binding	p.S70fs*24(1)		breast(148)|stomach(71)|biliary_tract(8)|endometrium(3)|soft_tissue(2)|large_intestine(2)|urinary_tract(2)|oesophagus(2)|ovary(2)|thyroid(1)|central_nervous_system(1)|lung(1)	243		all_neural(199;0.0189)|Ovarian(137;0.0563)		Epithelial(162;8.44e-05)|all cancers(182;0.000404)|OV - Ovarian serous cystadenocarcinoma(108;0.000426)|BRCA - Breast invasive adenocarcinoma(181;0.0261)		CCTATTTTTCCCTCGACACCC	0.463			Mis|N|F|S		lobular breast|gastric	gastric			Hereditary_Diffuse_Gastric_Cancer				22	70					0	0	0.002299	0	0
COG8	84342	broad.mit.edu	37	16	69368747	69368747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:69368747G>A	uc002ewy.2	-	3	1161	c.1090C>T	c.(1090-1092)CGG>TGG	p.R364W	COG8_uc002ewz.3_Missense_Mutation_p.R364W	NM_032382	NP_115758	Q96MW5	COG8_HUMAN	component of oligomeric golgi complex 8	364					protein transport	Golgi membrane|Golgi transport complex				ovary(1)	1						AACTGACCCCGGAAATCAGCT	0.557													25	21					0	0	0.003330	0	0
WWP2	11060	broad.mit.edu	37	16	69965070	69965070	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:69965070C>T	uc002exu.1	+	15	1550	c.1461C>T	c.(1459-1461)TCC>TCT	p.S487S	WWP2_uc002exv.1_Silent_p.S487S|WWP2_uc010vlm.1_Silent_p.S371S|WWP2_uc010vln.1_Silent_p.S105S|WWP2_uc002exw.1_Silent_p.S48S|uc002exx.1_5'Flank|MIR140_hsa-mir-140|MI0000456_5'Flank	NM_007014	NP_008945	O00308	WWP2_HUMAN	WW domain containing E3 ubiquitin protein ligase	487					entry of virus into host cell|negative regulation of protein transport|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transporter activity|proteasomal ubiquitin-dependent protein catabolic process|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus|ubiquitin ligase complex	RNA polymerase II transcription factor binding|ubiquitin-protein ligase activity			lung(3)|ovary(1)|breast(1)|skin(1)	6						AGCAAGGTTCCCCTGGTGCTT	0.498													44	59					0	0	0.003610	0	0
VAC14	55697	broad.mit.edu	37	16	70731086	70731086	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:70731086G>A	uc002ezm.2	-	16	2169	c.1911C>T	c.(1909-1911)TTC>TTT	p.F637F	VAC14_uc010cfw.2_Silent_p.F403F|VAC14_uc002ezn.2_Silent_p.F202F|VAC14_uc002ezl.2_Silent_p.F69F|VAC14_uc010cfx.1_Silent_p.F115F	NM_018052	NP_060522	Q08AM6	VAC14_HUMAN	Vac14 homolog	637					interspecies interaction between organisms	endoplasmic reticulum|endosome membrane|microsome	protein binding|receptor activity			pancreas(1)|skin(1)	2		Ovarian(137;0.0699)				TCTGGGTGAGGAAGCAGAGGG	0.607													7	16					0	0	0.004482	0	0
HYDIN	54768	broad.mit.edu	37	16	70942619	70942619	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:70942619G>A	uc002ezr.2	-	48	8275	c.8147C>T	c.(8146-8148)TCC>TTC	p.S2716F		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2717										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TGACAGCTGGGAAATGGTTCC	0.517													8	21					0	0	0.006214	0	0
HYDIN	54768	broad.mit.edu	37	16	70954575	70954575	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:70954575G>A	uc002ezr.2	-	46	7829	c.7701C>T	c.(7699-7701)TTC>TTT	p.F2567F		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	2568										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				GGATGTCTAGGAAGGGTACGC	0.328													12	8					0	0	0.001368	0	0
HYDIN	54768	broad.mit.edu	37	16	71012907	71012907	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:71012907C>T	uc002ezr.2	-	30	4673	c.4545G>A	c.(4543-4545)AGG>AGA	p.R1515R		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1516										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				CTGTGTTTTTCCTGGCTTGAT	0.433													7	22					0	0	0.003080	0	0
CHST4	10164	broad.mit.edu	37	16	71571069	71571069	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:71571069G>A	uc002fan.2	+	2	670	c.489G>A	c.(487-489)GTG>GTA	p.V163V	CHST4_uc002fao.2_Silent_p.V163V	NM_005769	NP_005760	Q8NCG5	CHST4_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	163	Lumenal (Potential).				cell-cell signaling|immune response|inflammatory response|N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity				0						CCTTTGAGGTGGTGGAGAAGG	0.602													27	24					0	0	0.007291	0	0
PHLPP2	23035	broad.mit.edu	37	16	71701093	71701093	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:71701093G>A	uc002fax.2	-	11	1778	c.1772C>T	c.(1771-1773)TCC>TTC	p.S591F	PHLPP2_uc002fav.2_RNA|PHLPP2_uc010cgf.2_Missense_Mutation_p.S591F	NM_015020	NP_055835	Q6ZVD8	PHLP2_HUMAN	PH domain and leucine rich repeat protein	591	LRR 15.					cytoplasm|membrane|nucleus	metal ion binding|phosphoprotein phosphatase activity			ovary(1)|central_nervous_system(1)	2						TAAGGCCTTGGAGAAGAGGGT	0.463													42	49					0	0	0.003214	0	0
ZFHX3	463	broad.mit.edu	37	16	72822397	72822397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:72822397C>T	uc002fck.2	-	10	10451	c.9778G>A	c.(9778-9780)GAG>AAG	p.E3260K	ZFHX3_uc002fcl.2_Missense_Mutation_p.E2346K	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3260					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TCTCCTTTCTCCTTCTTGGGG	0.592													25	62					0	0	0.003954	0	0
ZFHX3	463	broad.mit.edu	37	16	72822404	72822404	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:72822404G>A	uc002fck.2	-	10	10444	c.9771C>T	c.(9769-9771)CCC>CCT	p.P3257P	ZFHX3_uc002fcl.2_Silent_p.P2343P	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3257					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				TCTCCTTCTTGGGGACAGGCA	0.587													43	56					0	0	0.002222	0	0
GLG1	2734	broad.mit.edu	37	16	74499706	74499706	+	Silent	SNP	G	A	A	rs151123937	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:74499706G>A	uc002fcy.3	-	19	2585	c.2535C>T	c.(2533-2535)ATC>ATT	p.I845I	GLG1_uc002fcx.2_Silent_p.I845I|GLG1_uc002fcw.3_Silent_p.I834I|GLG1_uc002fcz.3_Silent_p.I262I	NM_001145667	NP_001139139	Q92896	GSLG1_HUMAN	golgi apparatus protein 1 isoform 3	845	Cys-rich GLG1 12.|Extracellular (Potential).					Golgi membrane|integral to membrane	receptor binding			ovary(1)|breast(1)	2						TCAGACATTCGATAATCTATG	0.438													18	67					0	0	0.008871	0	0
RFWD3	55159	broad.mit.edu	37	16	74695200	74695200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:74695200G>A	uc002fda.2	-	2	246	c.148C>T	c.(148-150)CCA>TCA	p.P50S	RFWD3_uc010cgq.2_Missense_Mutation_p.P50S	NM_018124	NP_060594	Q6PCD5	RFWD3_HUMAN	ring finger and WD repeat domain 3	50					DNA repair|mitotic cell cycle G1/S transition DNA damage checkpoint|response to ionizing radiation	nucleus	MDM2 binding|p53 binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)|breast(1)	3						AGGATGGATGGTACCCCCTGG	0.627													20	74					0	0	0.008871	0	0
WDR59	79726	broad.mit.edu	37	16	74949875	74949875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:74949875G>A	uc002fdh.1	-	13	1219	c.1117C>T	c.(1117-1119)CCT>TCT	p.P373S	WDR59_uc002fdi.2_Missense_Mutation_p.P373S|WDR59_uc002fdj.2_Missense_Mutation_p.P373S|WDR59_uc002fdg.1_5'UTR	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	373										ovary(1)|breast(1)	2						AGATTTCTAGGGGGATCTTCT	0.458													24	24					0	0	0.005443	0	0
BCMO1	53630	broad.mit.edu	37	16	81303925	81303925	+	Silent	SNP	C	T	T	rs141341532	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:81303925C>T	uc002fgn.1	+	7	1223	c.1005C>T	c.(1003-1005)TTC>TTT	p.F335F	BCMO1_uc010vnp.1_Silent_p.F266F	NM_017429	NP_059125	Q9HAY6	BCDO1_HUMAN	beta-carotene 15,15'-monooxygenase	335					retinoid metabolic process|steroid metabolic process	cytosol	beta-carotene 15,15'-monooxygenase activity|metal ion binding|monooxygenase activity				0						ACCAGCTCTTCTACCTGGCCA	0.577													32	24					0	0	0.003755	0	0
PLCG2	5336	broad.mit.edu	37	16	81962178	81962178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:81962178C>T	uc002fgt.2	+	24	2682	c.2530C>T	c.(2530-2532)CCC>TCC	p.P844S		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	844					intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						TGAAGACAATCCCTTAGGGTC	0.428													38	33					0	0	0.002222	0	0
PLCG2	5336	broad.mit.edu	37	16	81971415	81971415	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:81971415C>T	uc002fgt.2	+	28	3257	c.3105C>T	c.(3103-3105)GGC>GGT	p.G1035G		NM_002661	NP_002652	P16885	PLCG2_HUMAN	phospholipase C, gamma 2	1035	PI-PLC Y-box.				intracellular signal transduction|phospholipid catabolic process|platelet activation	plasma membrane	phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			large_intestine(4)|lung(2)|ovary(1)|skin(1)	8						GGCGCACGGGCTACGTTCTGC	0.522													24	28					0	0	0.005443	0	0
OSGIN1	29948	broad.mit.edu	37	16	83992977	83992977	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:83992977C>T	uc002fha.2	+	4	812	c.429C>T	c.(427-429)GCC>GCT	p.A143A	OSGIN1_uc002fhb.2_Silent_p.A60A|OSGIN1_uc002fhc.2_Silent_p.A60A	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	143					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						TCACCGAGGCCCCGGGGGTCT	0.627													5	11					0	0	0.001984	0	0
OSGIN1	29948	broad.mit.edu	37	16	83994350	83994350	+	Silent	SNP	C	T	T	rs35942653		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:83994350C>T	uc002fha.2	+	5	1013	c.630C>T	c.(628-630)CCC>CCT	p.P210P	OSGIN1_uc002fhb.2_Silent_p.P127P|OSGIN1_uc002fhc.2_Silent_p.P127P	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	210					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						GGAACCTCCCCGGGGGAGCCT	0.657													10	10					0	0	0.008291	0	0
OSGIN1	29948	broad.mit.edu	37	16	83998800	83998800	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:83998800C>G	uc002fha.2	+	7	1254	c.871C>G	c.(871-873)CCC>GCC	p.P291A	OSGIN1_uc002fhb.2_Missense_Mutation_p.P208A|OSGIN1_uc002fhc.2_Missense_Mutation_p.P208A	NM_013370	NP_037502	Q9UJX0	OSGI1_HUMAN	oxidative stress induced growth inhibitor 1	291					cell differentiation|multicellular organismal development|negative regulation of cell growth		growth factor activity				0						GACCCCCGATCCCAGCAGCTG	0.642													27	16					0	0	0.007291	0	0
ADAD2	161931	broad.mit.edu	37	16	84224962	84224962	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:84224962C>T	uc002fhr.2	+	1	240	c.126C>T	c.(124-126)GCC>GCT	p.A42A	ADAD2_uc002fhq.2_Silent_p.A42A	NM_001145400	NP_001138872	Q8NCV1	ADAD2_HUMAN	adenosine deaminase domain containing 2 isoform	42					RNA processing	intracellular	adenosine deaminase activity|double-stranded RNA binding				0						CCCAAAGTGCCTgggggcccg	0.637													3	5					0	0	0.000248	0	0
ATP2C2	9914	broad.mit.edu	37	16	84474529	84474529	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:84474529G>A	uc002fhx.2	+	14	1365	c.1276G>A	c.(1276-1278)GAA>AAA	p.E426K	ATP2C2_uc010chj.2_Missense_Mutation_p.E426K|ATP2C2_uc002fhy.2_Missense_Mutation_p.E443K|ATP2C2_uc002fhz.2_Missense_Mutation_p.E275K	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	426	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						AGTCATTAAGGAATTTTCCAA	0.498													18	11					0	0	0.008871	0	0
ATP2C2	9914	broad.mit.edu	37	16	84482226	84482226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:84482226C>T	uc002fhx.2	+	17	1680	c.1591C>T	c.(1591-1593)CCG>TCG	p.P531S	ATP2C2_uc010chj.2_Missense_Mutation_p.P531S|ATP2C2_uc002fhy.2_Missense_Mutation_p.P548S|ATP2C2_uc002fhz.2_Missense_Mutation_p.P380S	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	531	Extracellular (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						CATCCCCCTGCCGCTGACGCC	0.572													23	35					0	0	0.003330	0	0
KLHL36	79786	broad.mit.edu	37	16	84690691	84690691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:84690691C>T	uc002fig.2	+	3	419	c.278C>T	c.(277-279)TCC>TTC	p.S93F	KLHL36_uc010chl.2_Missense_Mutation_p.S92F	NM_024731	NP_079007	Q8N4N3	KLH36_HUMAN	kelch-like 36	93	BTB.									skin(2)	2						ATCGGCGCCTCCTACATTGGG	0.607													11	22					0	0	0.001368	0	0
FOXF1	2294	broad.mit.edu	37	16	86544757	86544757	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:86544757G>A	uc002fjl.2	+	1	625	c.582G>A	c.(580-582)ATG>ATA	p.M194I	uc002fjk.1_5'Flank	NM_001451	NP_001442	Q12946	FOXF1_HUMAN	forkhead box F1	194					branching involved in open tracheal system development|cardiac left ventricle morphogenesis|embryonic ectodermal digestive tract morphogenesis|endocardial cushion development|in utero embryonic development|lung vasculature development|midgut development|pancreas development|positive regulation of transcription, DNA-dependent|regulation of sequence-specific DNA binding transcription factor activity|ureter development|venous blood vessel development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0						GCCTGGGCATGATGAACGGCC	0.677													7	5					0	0	0.001984	0	0
ZFPM1	161882	broad.mit.edu	37	16	88599105	88599105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:88599105G>A	uc002fkv.2	+	8	1063	c.1030G>A	c.(1030-1032)GAC>AAC	p.D344N		NM_153813	NP_722520	Q8IX07	FOG1_HUMAN	zinc finger protein, multitype 1	344					blood coagulation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleoplasm	DNA binding|transcription factor binding|zinc ion binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(80;0.0478)		GGTGCACACGGACACGCTGAG	0.701													5	4					0	0	0.001168	0	0
ATP2A3	489	broad.mit.edu	37	17	3846787	3846787	+	Silent	SNP	C	T	T	rs143762354	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:3846787C>T	uc002fxb.1	-	11	1468	c.1317G>A	c.(1315-1317)GAG>GAA	p.E439E	ATP2A3_uc002fwx.1_Silent_p.E439E|ATP2A3_uc002fwy.1_Silent_p.E439E|ATP2A3_uc002fwz.1_Silent_p.E439E|ATP2A3_uc002fxa.1_Silent_p.E439E|ATP2A3_uc002fxc.1_Silent_p.E439E|ATP2A3_uc002fxd.1_Silent_p.E439E	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	439	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		TCTCCGTGGCCTCTCCCACCT	0.632													33	40					0	0	0.004878	0	0
ATP2A3	489	broad.mit.edu	37	17	3850765	3850765	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:3850765C>T	uc002fxb.1	-	8	1166	c.1015G>A	c.(1015-1017)GTG>ATG	p.V339M	ATP2A3_uc002fwx.1_Missense_Mutation_p.V339M|ATP2A3_uc002fwy.1_Missense_Mutation_p.V339M|ATP2A3_uc002fwz.1_Missense_Mutation_p.V339M|ATP2A3_uc002fxa.1_Missense_Mutation_p.V339M|ATP2A3_uc002fxc.1_Missense_Mutation_p.V339M|ATP2A3_uc002fxd.1_Missense_Mutation_p.V339M	NM_174955	NP_777615	Q93084	AT2A3_HUMAN	ATPase, Ca++ transporting, ubiquitous isoform b	339	Cytoplasmic (By similarity).				ATP biosynthetic process|platelet activation	integral to membrane|nuclear membrane|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			ovary(3)|breast(1)|central_nervous_system(1)	5				LUAD - Lung adenocarcinoma(1115;0.000692)|Lung(3;0.0766)		AGGGTCTCCACGGACGGCAGG	0.657													24	25					0	0	0.003954	0	0
USP6	9098	broad.mit.edu	37	17	5042908	5042908	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:5042908C>T	uc002gau.1	+	22	3667	c.1437C>T	c.(1435-1437)GTC>GTT	p.V479V	USP6_uc002gav.1_Silent_p.V479V|USP6_uc010ckz.1_Silent_p.V162V|uc002gbd.2_5'Flank	NM_004505	NP_004496	P35125	UBP6_HUMAN	ubiquitin specific protease 6	479					protein deubiquitination|regulation of vesicle-mediated transport|ubiquitin-dependent protein catabolic process	lysosome|plasma membrane|recycling endosome	calmodulin binding|cysteine-type endopeptidase activity|nucleic acid binding|protein binding|Rab GTPase activator activity|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)	5						GCTGCTGGGTCCGTGCCATAT	0.592			T	COL1A1|CDH11|ZNF9|OMD	aneurysmal bone cysts								13	47					0	0	0.003163	0	0
SLC13A5	284111	broad.mit.edu	37	17	6589527	6589527	+	Nonstop_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:6589527T>G	uc002gdj.2	-	12	1794	c.1706A>C	c.(1705-1707)TAG>TCG	p.*569S	SLC13A5_uc010vtf.1_Nonstop_Mutation_p.*523S|SLC13A5_uc010clq.2_Nonstop_Mutation_p.*526S|SLC13A5_uc002gdk.2_Nonstop_Mutation_p.*552S	NM_177550	NP_808218	Q86YT5	S13A5_HUMAN	solute carrier family 13, member 5 isoform a	569						integral to membrane	citrate transmembrane transporter activity				0						TGGCTCTTCCTAAGTCTCAAT	0.498													61	62					0	0	0.003610	0	0
TEKT1	83659	broad.mit.edu	37	17	6703386	6703386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:6703386C>T	uc002gdt.2	-	8	1327	c.1217G>A	c.(1216-1218)GGG>GAG	p.G406E	TEKT1_uc010vth.1_Missense_Mutation_p.G260E	NM_053285	NP_444515	Q969V4	TEKT1_HUMAN	tektin 1	406					microtubule cytoskeleton organization	cilium axoneme|flagellar axoneme|microtubule				ovary(1)|skin(1)	2		Myeloproliferative disorder(207;0.0255)				AGCCCAGACCCCATGGTCTTC	0.488													52	67					0	0	0.003610	0	0
SLC2A4	6517	broad.mit.edu	37	17	7186858	7186858	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7186858C>T	uc002gfp.2	+	3	417	c.217C>T	c.(217-219)CCT>TCT	p.P73S	SLC2A4_uc002gfo.2_Missense_Mutation_p.P73S|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	73	Extracellular (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						CAGCTCCATCCCTCCAGGCAC	0.597													35	26					0	0	0.004878	0	0
SLC2A4	6517	broad.mit.edu	37	17	7188167	7188167	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7188167C>T	uc002gfp.2	+	8	1129	c.929C>T	c.(928-930)TCG>TTG	p.S310L	SLC2A4_uc002gfo.2_Missense_Mutation_p.S310L|SLC2A4_uc010cmd.2_RNA	NM_001042	NP_001033	P14672	GTR4_HUMAN	glucose transporter 4	310	Extracellular (Potential).				carbohydrate metabolic process|glucose homeostasis|glucose import	external side of plasma membrane|integral to plasma membrane|perinuclear region of cytoplasm	D-glucose transmembrane transporter activity|protein binding				0						TTCTATTATTCGACCAGCATC	0.552													28	123					0	0	0.008361	0	0
ACAP1	9744	broad.mit.edu	37	17	7240682	7240682	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7240682G>A	uc002ggd.2	+	2	311	c.105G>A	c.(103-105)CTG>CTA	p.L35L		NM_014716	NP_055531	Q15027	ACAP1_HUMAN	centaurin beta1	35	BAR.|Required for formation of endosomal tubules when overexpressed with PIP5K1C.				intracellular signal transduction|lipid metabolic process|protein transport|regulation of ARF GTPase activity		ARF GTPase activator activity|phospholipase C activity|protein binding|zinc ion binding			breast(2)|large_intestine(1)	3						AGACCCGTCTGGAAAAGGTGA	0.557													16	45					0	0	0.004007	0	0
TNK1	8711	broad.mit.edu	37	17	7290399	7290399	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7290399G>A	uc002ggi.3	+	9	1498	c.1338G>A	c.(1336-1338)GGG>GGA	p.G446G	TNK1_uc002ggj.3_Silent_p.G441G|TNK1_uc010cmf.2_RNA|TNK1_uc002ggk.3_Silent_p.G43G	NM_003985	NP_003976	Q13470	TNK1_HUMAN	tyrosine kinase, non-receptor, 1	446					protein autophosphorylation	membrane	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding|signal transducer activity			lung(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(122;0.157)				CAGATGCGGGGGGCTTGCCAG	0.632													7	12					0	0	0.001984	0	0
ZBTB4	57659	broad.mit.edu	37	17	7365775	7365776	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7365775_7365776GG>AA	uc002ghc.3	-	4	2775_2776	c.2525_2526CC>TT	c.(2524-2526)TCC>TTT	p.S842F	ZBTB4_uc002ghd.3_Missense_Mutation_p.S842F	NM_001128833	NP_001122305	Q9P1Z0	ZBTB4_HUMAN	zinc finger and BTB domain containing 4	842					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(1115;3.46e-05)|Myeloproliferative disorder(207;0.0255)		COAD - Colon adenocarcinoma(228;4.1e-06)|READ - Rectum adenocarcinoma(115;0.0642)		AGGCGGTCTCGGAAGCTTCCTC	0.614													13	9					0	0	0.004672	0	0
TNFSF12	8742	broad.mit.edu	37	17	7460614	7460614	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7460614C>T	uc002ghg.2	+	7	793	c.697C>T	c.(697-699)CAT>TAT	p.H233Y	TNFSF12_uc002ghh.2_RNA|TNFSF12-TNFSF13_uc002ghi.1_Intron|TNFSF13_uc002ghj.2_5'Flank|TNFSF13_uc002ghk.2_5'Flank|TNFSF13_uc002ghl.2_5'Flank|TNFSF13_uc010cmk.2_5'Flank|TNFSF13_uc010vua.1_5'Flank	NM_003809	NP_003800	O43508	TNF12_HUMAN	tumor necrosis factor (ligand) superfamily,	233	Extracellular (Potential).				angiogenesis|apoptosis|cell differentiation|endothelial cell migration|immune response|induction of apoptosis|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|signal transduction	extracellular space|integral to plasma membrane|perinuclear region of cytoplasm	cytokine activity|tumor necrosis factor receptor binding				0		Prostate(122;0.157)				CCCCTGGGCCCATCTCAAGGC	0.701													5	20					0	0	0.000602	0	0
DNAH2	146754	broad.mit.edu	37	17	7727471	7727471	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7727471C>T	uc002giu.1	+	75	11525	c.11511C>T	c.(11509-11511)CTC>CTT	p.L3837L	DNAH2_uc010cnm.1_Silent_p.L775L	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3837	AAA 6 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GATCCCCACTCGTGTTCATCC	0.617													24	31					0	0	0.005443	0	0
KDM6B	23135	broad.mit.edu	37	17	7753485	7753486	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7753485_7753486CC>TT	uc002giw.1	+	13	4039_4040	c.3663_3664CC>TT	c.(3661-3666)TCCCTG>TCTTTG	p.1221_1222SL>SL	KDM6B_uc002gix.2_Silent_p.523_524SL>SL	NM_001080424	NP_001073893	O15054	KDM6B_HUMAN	lysine (K)-specific demethylase 6B	1221_1222					inflammatory response	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			central_nervous_system(1)|pancreas(1)	2						TGGCGGGCTCCCTGCGGCTCAG	0.579													7	6					0	0	0.004672	0	0
CNTROB	116840	broad.mit.edu	37	17	7839764	7839765	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:7839764_7839765CC>TT	uc002gjq.2	+	6	1594_1595	c.675_676CC>TT	c.(673-678)GACCGC>GATTGC	p.R226C	CNTROB_uc002gjp.2_Missense_Mutation_p.R226C|CNTROB_uc002gjr.2_Missense_Mutation_p.R128C|CNTROB_uc010vum.1_5'Flank	NM_053051	NP_444279	Q8N137	CNTRB_HUMAN	centrobin, centrosomal BRCA2 interacting protein	226	Potential.				centriole replication|centrosome separation|cytokinesis	centriole	protein domain specific binding			breast(1)|central_nervous_system(1)	2		Prostate(122;0.173)				TGGCTGCCGACCGCAAGAAAGA	0.49													13	57					0	0	0.004672	0	0
ALOXE3	59344	broad.mit.edu	37	17	8000078	8000079	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:8000078_8000079GG>AA	uc010cnr.2	-	16	2372_2373	c.2002_2003CC>TT	c.(2002-2004)CCG>TTG	p.P668L	ALOXE3_uc002gka.2_Missense_Mutation_p.P824L|ALOXE3_uc010vuo.1_Missense_Mutation_p.P800L	NM_021628	NP_067641	Q9BYJ1	LOXE3_HUMAN	arachidonate lipoxygenase 3 isoform 2	668	Lipoxygenase.				leukotriene biosynthetic process		iron ion binding|lipoxygenase activity			skin(3)|lung(1)|central_nervous_system(1)	5						GCTCCGCCTCGGGGCCTCCTCT	0.614													22	18					0	0	0.004672	0	0
MYH8	4626	broad.mit.edu	37	17	10323467	10323467	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:10323467C>T	uc002gmm.2	-	3	173	c.78G>A	c.(76-78)CGG>CGA	p.R26R	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	26	Myosin head-like.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						GGGCCTCAATCCGCTCCTTTT	0.478									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				39	84					0	0	0.005524	0	0
MYH4	4622	broad.mit.edu	37	17	10358975	10358975	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:10358975C>T	uc002gmn.2	-	19	2241	c.2130G>A	c.(2128-2130)AGG>AGA	p.R710R	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	710	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						GGAAGCCTTTCCTGCAGATGC	0.453													13	40					0	0	0.003163	0	0
MYH1	4619	broad.mit.edu	37	17	10395837	10395837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:10395837C>T	uc002gmo.2	-	40	5810	c.5716G>A	c.(5716-5718)GAG>AAG	p.E1906K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1906	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCTCCAGCTCGTGCTGGATC	0.483													24	72					0	0	0.004656	0	0
MYH1	4619	broad.mit.edu	37	17	10415480	10415480	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:10415480G>A	uc002gmo.2	-	13	1271	c.1177C>T	c.(1177-1179)CTG>TTG	p.L393L	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	393	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCAGAGTTCAGATTTTGGAGA	0.468													32	115					0	0	0.002445	0	0
MYH2	4620	broad.mit.edu	37	17	10432487	10432487	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:10432487C>T	uc010coi.2	-	26	3474	c.3346G>A	c.(3346-3348)GAA>AAA	p.E1116K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1116K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1116	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						ACTTGCAATTCTTTAATTTTC	0.393													11	67					0	0	0.002450	0	0
DNAH9	1770	broad.mit.edu	37	17	11572944	11572944	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:11572944C>T	uc002gne.2	+	17	3254	c.3186C>T	c.(3184-3186)ATC>ATT	p.I1062I	DNAH9_uc010coo.2_Silent_p.I356I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1062	Stem (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		AAGTGCAAATCGACTCCTATG	0.483													25	87					0	0	0.005443	0	0
DNAH9	1770	broad.mit.edu	37	17	11737988	11737988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:11737988G>A	uc002gne.2	+	49	9348	c.9280G>A	c.(9280-9282)GAA>AAA	p.E3094K	DNAH9_uc010coo.2_Missense_Mutation_p.E2388K	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3094	Stalk (By similarity).|Potential.				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GGCTGCCCAGGAAGTAGAGCT	0.507													17	13					0	0	0.008871	0	0
ELAC2	60528	broad.mit.edu	37	17	12899064	12899064	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:12899064G>A	uc002gnz.3	-	19	1859	c.1764C>T	c.(1762-1764)CTC>CTT	p.L588L	ELAC2_uc002gnu.3_5'UTR|ELAC2_uc002gnv.3_Silent_p.L216L|ELAC2_uc002gnw.3_Silent_p.L246L|ELAC2_uc002gnx.3_Silent_p.L348L|ELAC2_uc010vvo.1_Silent_p.L386L|ELAC2_uc010vvp.1_Silent_p.L569L|ELAC2_uc010vvq.1_Silent_p.L587L|ELAC2_uc010vvr.1_Silent_p.L548L	NM_018127	NP_060597	Q9BQ52	RNZ2_HUMAN	elaC homolog 2 isoform 1	588					tRNA processing	nucleus	endonuclease activity|metal ion binding|protein binding				0						GGTACTGCTGGAGCCAGGCTT	0.592									Hereditary_Prostate_Cancer				9	12					0	0	0.006214	0	0
ZNF286A	57335	broad.mit.edu	37	17	15604486	15604486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:15604486C>T	uc010cot.2	+	3	454	c.58C>T	c.(58-60)CCC>TCC	p.P20S	ZNF286A_uc002goz.3_5'UTR|ZNF286A_uc010vwa.1_Missense_Mutation_p.P20S|ZNF286A_uc002gpa.2_Missense_Mutation_p.P20S	NM_001130842	NP_001124314	Q9HBT8	Z286A_HUMAN	zinc finger protein 286	20					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0822)|READ - Rectum adenocarcinoma(1115;0.0222)|BRCA - Breast invasive adenocarcinoma(8;0.0781)		CCAGGATTCTCCCCATTTCCA	0.473													60	183					0	0	0.003610	0	0
TRPV2	51393	broad.mit.edu	37	17	16340158	16340158	+	Silent	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:16340158C>A	uc002gpy.2	+	15	2617	c.2250C>A	c.(2248-2250)GCC>GCA	p.A750A	TRPV2_uc002gpz.2_Silent_p.A320A|NCRNA00188_uc010vwf.1_5'Flank|NCRNA00188_uc010vwg.1_5'Flank|NCRNA00188_uc010vwh.1_5'Flank|NCRNA00188_uc010cpd.2_5'Flank|NCRNA00188_uc002gqc.2_5'Flank|NCRNA00188_uc002gqb.3_5'Flank|NCRNA00188_uc010vwi.1_5'Flank|NCRNA00188_uc010vwj.1_5'Flank|NCRNA00188_uc002gqa.3_5'Flank|NCRNA00188_uc010vwk.1_5'Flank|NCRNA00188_uc010vwl.1_5'Flank|NCRNA00188_uc010vwm.1_5'Flank|NCRNA00188_uc010vwn.1_5'Flank|NCRNA00188_uc010cpe.2_5'Flank|NCRNA00188_uc010vwo.1_5'Flank|NCRNA00188_uc010vwp.1_5'Flank|SNORD49B_uc010cpf.2_5'Flank	NM_016113	NP_057197	Q9Y5S1	TRPV2_HUMAN	transient receptor potential cation channel,	750	Cytoplasmic (Potential).				sensory perception	integral to plasma membrane|melanosome	calcium channel activity			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (92;0.0837)		AGGATGGTGCCTCTGAGGAAA	0.552													28	31					2.49534e-26	3.5406e-26	0.002096	1	0
ATPAF2	91647	broad.mit.edu	37	17	17921864	17921864	+	Nonstop_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:17921864C>A	uc002gse.1	-	8	1022	c.869G>T	c.(868-870)TGA>TTA	p.*290L	ATPAF2_uc002gsd.1_Intron|ATPAF2_uc002gsf.1_RNA	NM_145691	NP_663729	Q8N5M1	ATPF2_HUMAN	ATP synthase mitochondrial F1 complex assembly	290					proton-transporting ATP synthase complex assembly	mitochondrion|nuclear speck	protein binding				0	all_neural(463;0.228)					GCCCAGGCCTCACTCCTTCAG	0.647													14	48					7.05477e-17	9.98699e-17	0.004990	1	0
MYO15A	51168	broad.mit.edu	37	17	18025694	18025694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:18025694G>A	uc010vxh.1	+	2	3918	c.3580G>A	c.(3580-3582)GAG>AAG	p.E1194K		NM_016239	NP_057323	Q9UKN7	MYO15_HUMAN	myosin XV	1194	Myosin head-like.				sensory perception of sound	cytoplasm|myosin complex|stereocilium	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|pancreas(1)|breast(1)|central_nervous_system(1)	9	all_neural(463;0.228)					CTCCTGGGAGGAGGTCGGCCC	0.632													16	21					0	0	0.004990	0	0
EPN2	22905	broad.mit.edu	37	17	19237289	19237289	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:19237289C>T	uc002gvd.3	+	11	2096	c.1648C>T	c.(1648-1650)CCT>TCT	p.P550S	EPN2_uc002gve.3_Missense_Mutation_p.P493S|EPN2_uc002gvf.3_Missense_Mutation_p.P265S|EPN2_uc010vyo.1_Missense_Mutation_p.P258S|EPN2_uc010vyp.1_Missense_Mutation_p.P486S|EPN2_uc010vyq.1_Missense_Mutation_p.P487S|EPN2_uc002gvh.1_Intron|EPN2_uc002gvj.3_Intron	NM_014964	NP_055779	O95208	EPN2_HUMAN	epsin 2 isoform b	550	6 X 3 AA repeats of [DE]-P-W.|3 X 3 AA repeats of N-P-F.				endocytosis		lipid binding			skin(1)	1	all_cancers(12;3.11e-05)|all_epithelial(12;0.00121)|Hepatocellular(7;0.00345)|Breast(13;0.143)					CACCTCGGCCCCTGTTAACCC	0.567													4	14					0	0	0.000602	0	0
NOS2	4843	broad.mit.edu	37	17	26096159	26096159	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:26096159G>A	uc002gzu.2	-	17	2142	c.1878C>T	c.(1876-1878)CTC>CTT	p.L626L	NOS2_uc010wab.1_Silent_p.L591L	NM_000625	NP_000616	P35228	NOS2_HUMAN	nitric oxide synthase 2A	626	Flavodoxin-like.|FMN (By similarity).				arginine catabolic process|defense response to Gram-negative bacterium|innate immune response in mucosa|nitric oxide biosynthetic process|peptidyl-cysteine S-nitrosylation|platelet activation|positive regulation of killing of cells of other organism|positive regulation of leukocyte mediated cytotoxicity|regulation of cellular respiration|regulation of insulin secretion|superoxide metabolic process	cytosol|nucleus	arginine binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|protein homodimerization activity|tetrahydrobiopterin binding			skin(2)|ovary(1)|breast(1)	4					Dexamethasone(DB01234)|Hydrocortisone(DB00741)|L-Arginine(DB00125)|L-Citrulline(DB00155)	TGCTGGAGCCGAGGCCAAACA	0.612													7	7					0	0	0.003080	0	0
VTN	7448	broad.mit.edu	37	17	26696596	26696597	+	Missense_Mutation	DNP	TC	CT	CT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:26696596_26696597TC>CT	uc002hbc.2	-	3	609_610	c.460_461GA>AG	c.(460-462)GAG>AGG	p.E154R	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	154					cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	ACTGCACAGCTCCTCCTCTGCT	0.629													15	15					0	0	0.004672	0	0
PIPOX	51268	broad.mit.edu	37	17	27380467	27380468	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:27380467_27380468GG>AA	uc002hdr.1	+	4	840_841	c.514_515GG>AA	c.(514-516)GGA>AAA	p.G172K		NM_016518	NP_057602	Q9P0Z9	SOX_HUMAN	pipecolic acid oxidase	172					tetrahydrofolate metabolic process	peroxisome	L-pipecolate oxidase activity|sarcosine oxidase activity				0	Lung NSC(42;0.015)		Epithelial(11;9.87e-06)|BRCA - Breast invasive adenocarcinoma(11;3.92e-05)|all cancers(11;5.59e-05)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)		Glycine(DB00145)	AGTGCGTGACGGAGAGAAGGTG	0.53													15	42					0	0	0.004672	0	0
ABHD15	116236	broad.mit.edu	37	17	27893587	27893588	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:27893587_27893588CC>TT	uc002hed.1	-	1	461_462	c.397_398GG>AA	c.(397-399)GGG>AAG	p.G133K	TP53I13_uc002hee.2_5'Flank	NM_198147	NP_937790	Q6UXT9	ABH15_HUMAN	abhydrolase domain containing 15 precursor	133						extracellular region	carboxylesterase activity				0						GGCCACTAGCCCATCGTCCGCC	0.688													8	7					0	0	0.004672	0	0
SSH2	85464	broad.mit.edu	37	17	27958398	27958398	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:27958398G>A	uc002heo.1	-	15	3733	c.3733C>T	c.(3733-3735)CAG>TAG	p.Q1245*	SSH2_uc010wbh.1_Nonsense_Mutation_p.Q1272*	NM_033389	NP_203747	Q76I76	SSH2_HUMAN	slingshot 2	1245					actin cytoskeleton organization|regulation of actin polymerization or depolymerization|regulation of axonogenesis|regulation of lamellipodium assembly	cytoplasm|cytoskeleton	actin binding|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			skin(2)	2						AGCCCTGCCTGGAAAACCACT	0.512													31	34					0	0	0.003271	0	0
NF1	4763	broad.mit.edu	37	17	29683977	29683977	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:29683977G>A	uc002hgg.2	+	53	8072	c.7739_splice	c.e53-1	p.E2580_splice	NF1_uc002hgh.2_Splice_Site_p.E2559_splice|NF1_uc010cso.2_Splice_Site_p.E768_splice|NF1_uc010wbt.1_Splice_Site_p.E58_splice|NF1_uc010wbu.1_Splice_Site	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1						actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity			soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		TCTTGCTGCAGAAACTCAGAG	0.368			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			55	79					0	0	0.003610	0	0
ACCN1	40	broad.mit.edu	37	17	31355347	31355347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:31355347G>A	uc002hhu.2	-	4	1172	c.898C>T	c.(898-900)CCT>TCT	p.P300S	ACCN1_uc002hht.2_Missense_Mutation_p.P351S	NM_001094	NP_001085	Q16515	ACCN1_HUMAN	amiloride-sensitive cation channel 1, neuronal	300	Extracellular (By similarity).				central nervous system development|peripheral nervous system development|synaptic transmission	integral to plasma membrane	ligand-gated sodium channel activity|protein binding			ovary(2)|large_intestine(1)|central_nervous_system(1)	4		Breast(31;0.042)|Ovarian(249;0.202)		UCEC - Uterine corpus endometrioid carcinoma (308;0.13)|BRCA - Breast invasive adenocarcinoma(366;0.215)	Amiloride(DB00594)	CTGTAAACAGGAAAAAAGTCG	0.577													5	30					0	0	0.000602	0	0
TMEM132E	124842	broad.mit.edu	37	17	32962035	32962035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:32962035G>A	uc002hif.2	+	8	1964	c.1636G>A	c.(1636-1638)GAT>AAT	p.D546N		NM_207313	NP_997196	Q6IEE7	T132E_HUMAN	transmembrane protein 132E precursor	546	Extracellular (Potential).					integral to membrane				central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(366;0.231)		GCGGGTGGGCGATCCCCGAGT	0.617													14	13					0	0	0.001855	0	0
SLFN13	146857	broad.mit.edu	37	17	33772415	33772415	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:33772415G>A	uc002hjk.1	-	1	615	c.285C>T	c.(283-285)TTC>TTT	p.F95F	SLFN13_uc010wch.1_Silent_p.F95F|SLFN13_uc002hjl.2_Silent_p.F95F|SLFN13_uc010ctt.2_Intron|SLFN13_uc002hjm.2_5'UTR	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	95						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		TAGTCTCAAAGAAAGCCTGCA	0.403													36	27					0	0	0.005524	0	0
KRT222	125113	broad.mit.edu	37	17	38813978	38813978	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:38813978C>T	uc002hvc.2	-	4	536	c.471G>A	c.(469-471)GGG>GGA	p.G157G	KRT222_uc010wfk.1_RNA|KRT222_uc002hvb.2_Silent_p.G117G|KRT222_uc010cxc.2_Silent_p.G117G	NM_152349	NP_689562	Q8N1A0	KT222_HUMAN	truncated type I keratin KA21	157						intermediate filament	structural molecule activity			central_nervous_system(1)|skin(1)	2						TGTCTTTTTTCCCACCTTGGA	0.279													20	70					0	0	0.002780	0	0
KRT39	390792	broad.mit.edu	37	17	39123069	39123069	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:39123069T>C	uc002hvo.1	-	1	76	c.40A>G	c.(40-42)ACC>GCC	p.T14A	KRT39_uc010wfm.1_5'UTR	NM_213656	NP_998821	Q6A163	K1C39_HUMAN	type I hair keratin KA35	14	Head.					intermediate filament	structural molecule activity				0		Breast(137;0.00043)|Ovarian(249;0.15)				TGACATGGGGTTGAAGGAGAA	0.468													71	78					0	0	0.003610	0	0
KRT33A	3883	broad.mit.edu	37	17	39506842	39506842	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:39506842T>G	uc002hwk.1	-	1	215	c.178A>C	c.(178-180)ATG>CTG	p.M60L		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	60	Coil 1A.|Rod.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				AGGAACTGCATGGTCTCCTTC	0.627													47	51					0	0	0.003610	0	0
KRT33A	3883	broad.mit.edu	37	17	39506882	39506882	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:39506882C>A	uc002hwk.1	-	1	175	c.138G>T	c.(136-138)TGG>TGT	p.W46C		NM_004138	NP_004129	O76009	KT33A_HUMAN	keratin 33A	46	Head.					intermediate filament	protein binding|structural molecule activity				0		Breast(137;0.000496)				CCTCACAGAACCAGTTGCAGT	0.652													27	45					1.2476e-16	1.76453e-16	0.006320	1	0
Unknown	0	broad.mit.edu	37	17	39566105	39566105	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:39566105C>T	uc002hwo.1	+	2		c.1526C>T								Homo sapiens cDNA FLJ41849 fis, clone NT2RI3003409.																		AACCCCAACTCACTTGGTCCT	0.507													5	5					0	0	0.000602	0	0
KRT35	3886	broad.mit.edu	37	17	39637161	39637161	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:39637161G>A	uc002hws.2	-	1	232	c.189C>T	c.(187-189)GCC>GCT	p.A63A		NM_002280	NP_002271	Q92764	KRT35_HUMAN	keratin 35	63	Head.				anatomical structure morphogenesis	intermediate filament	protein binding|structural molecule activity			ovary(1)|skin(1)	2		Breast(137;0.000286)				GGCAGCTGGTGGCCCTGTAGC	0.612													7	20					0	0	0.003080	0	0
KRT9	3857	broad.mit.edu	37	17	39726464	39726464	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:39726464G>A	uc002hxe.3	-	2	717	c.651C>T	c.(649-651)GAC>GAT	p.D217D	JUP_uc010wfs.1_Intron	NM_000226	NP_000217	P35527	K1C9_HUMAN	keratin 9	217	Rod.|Coil 1B.				intermediate filament organization|skin development		protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Breast(137;0.000307)				CCACTGTCAGGTCCACAATCT	0.502													87	77					0	0	0.003610	0	0
VPS25	84313	broad.mit.edu	37	17	40928268	40928268	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:40928268C>T	uc002ibi.2	+	5	388	c.348C>T	c.(346-348)TCC>TCT	p.S116S		NM_032353	NP_115729	Q9BRG1	VPS25_HUMAN	vacuolar protein sorting 25	116					cellular membrane organization|endosome transport|protein transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endosome membrane|nucleoplasm					0		Breast(137;0.00104)		BRCA - Breast invasive adenocarcinoma(366;0.0745)		CACAGGTTTCCAGGAGTGGCC	0.458													12	49					0	0	0.001368	0	0
G6PC	2538	broad.mit.edu	37	17	41063431	41063431	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:41063431G>A	uc002icb.1	+	5	1141	c.1062G>A	c.(1060-1062)AAG>AAA	p.K354K	G6PC_uc010whf.1_3'UTR	NM_000151	NP_000142	P35575	G6PC_HUMAN	glucose-6-phosphatase, catalytic subunit	354	Cytoplasmic (Potential).				gluconeogenesis|glucose homeostasis|transmembrane transport	integral to endoplasmic reticulum membrane	glucose-6-phosphatase activity|phosphate binding			ovary(1)|breast(1)|kidney(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.113)		AGCCGCACAAGAAGTCGTTGT	0.527									Glycogen_Storage_Disease_type_Ia				15	55					0	0	0.004990	0	0
RND2	8153	broad.mit.edu	37	17	41177998	41177998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:41177998G>A	uc002icn.2	+	2	231	c.124G>A	c.(124-126)GAG>AAG	p.E42K		NM_005440	NP_005431	P52198	RND2_HUMAN	Rho family GTPase 2 precursor	42	Effector region (Potential).				small GTPase mediated signal transduction	acrosomal membrane	GTP binding|GTPase activity				0		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CACCGTGTTTGAGAACTACAC	0.542													26	28					0	0	0.008361	0	0
C17orf46	124783	broad.mit.edu	37	17	43333173	43333173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:43333173G>A	uc002iis.1	-	4	472	c.376C>T	c.(376-378)CCG>TCG	p.P126S	LOC100133991_uc010dah.2_Intron|C17orf46_uc010wjk.1_Missense_Mutation_p.P105S	NM_152343	NP_689556	Q96LK8	CQ046_HUMAN	hypothetical protein LOC124783	126										large_intestine(1)|ovary(1)	2						AGACTCCACGGTCTGAAGGTC	0.557													45	50					0	0	0.002852	0	0
MAP3K14	9020	broad.mit.edu	37	17	43364706	43364706	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:43364706G>A	uc002iiw.1	-	4	460	c.351C>T	c.(349-351)ATC>ATT	p.I117I	MAP3K14_uc010daj.1_5'Flank|MAP3K14_uc002iiv.1_5'UTR	NM_003954	NP_003945	Q99558	M3K14_HUMAN	mitogen-activated protein kinase kinase kinase	117					cellular response to mechanical stimulus|I-kappaB kinase/NF-kappaB cascade|immune response|positive regulation of I-kappaB kinase/NF-kappaB cascade|T cell costimulation	cytosol	ATP binding|MAP kinase kinase kinase activity|NF-kappaB-inducing kinase activity|protein binding			central_nervous_system(3)|breast(2)|lung(1)|ovary(1)|stomach(1)	8						CATTGTTGGGGATCTGATCAA	0.423													5	27					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	17	43625499	43625499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:43625499C>T	uc002ijh.2	-	1	626	c.505G>A	c.(505-507)GTT>ATT	p.V169I	uc010wjv.1_Intron					Homo sapiens cDNA FLJ45049 fis, clone BRAWH3022347.																		GATGGTTTAACCTCTGTAGTA	0.507													45	143					0	0	0.003610	0	0
CRHR1	1394	broad.mit.edu	37	17	43907558	43907558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:43907558C>T	uc010dap.2	+	7	885	c.620C>T	c.(619-621)CCC>CTC	p.P207L	CRHR1_uc010wjx.1_Missense_Mutation_p.P3L|CRHR1_uc002ijp.2_Missense_Mutation_p.P77L|CRHR1_uc002ijm.2_Missense_Mutation_p.P178L|CRHR1_uc002ijn.2_Missense_Mutation_p.P138L|CRHR1_uc010dar.2_Missense_Mutation_p.P178L|CRHR1_uc010dao.2_Missense_Mutation_p.P77L|CRHR1_uc010daq.2_Missense_Mutation_p.P3L|CRHR1_uc010das.1_RNA|CRHR1_uc002ijo.1_RNA	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	207	Extracellular (Potential).				female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		ACCATGAGCCCCGAGGTCCAC	0.642													7	15					0	0	0.001984	0	0
IMP5	162540	broad.mit.edu	37	17	43923981	43923981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:43923981G>A	uc010wka.1	+	1	1709	c.1709G>A	c.(1708-1710)GGG>GAG	p.G570E	LOC100128977_uc010wjz.1_Intron	NM_175882	NP_787078	Q8IUH8	IMP5_HUMAN	intramembrane protease 5 precursor	570	Extracellular (Potential).					integral to membrane	aspartic-type endopeptidase activity			pancreas(2)	2	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.148)		CGAGGAGCAGGGGACTTAGAC	0.592													24	18					0	0	0.002780	0	0
WNT9B	7484	broad.mit.edu	37	17	44950042	44950042	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:44950042G>A	uc002ikw.1	+	2	274	c.237G>A	c.(235-237)AGG>AGA	p.R79R	WNT9B_uc002ikx.1_Silent_p.R79R	NM_003396	NP_003387	O14905	WNT9B_HUMAN	wingless-type MMTV integration site family,	79					anterior/posterior pattern formation|axis specification|branching involved in ureteric bud morphogenesis|canonical Wnt receptor signaling pathway|cell-cell signaling|cellular response to retinoic acid|collecting duct development|cornea development in camera-type eye|endoderm development|establishment of planar polarity involved in nephron morphogenesis|kidney rudiment formation|male genitalia development|mesonephric duct formation|metanephric tubule development|neuron differentiation|palate development|regulation of mesenchymal to epithelial transition involved in metanephros morphogenesis|uterus morphogenesis|Wnt receptor signaling pathway, calcium modulating pathway|Wnt receptor signaling pathway, planar cell polarity pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	extracellular matrix structural constituent|G-protein-coupled receptor binding			lung(2)	2			BRCA - Breast invasive adenocarcinoma(9;0.0257)			AGACCCTGAGGGATGCTGCGC	0.662													17	14					0	0	0.004990	0	0
SKAP1	8631	broad.mit.edu	37	17	46474139	46474139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:46474139C>T	uc002ini.1	-	2	167	c.55G>A	c.(55-57)GAG>AAG	p.E19K	SKAP1_uc002inj.1_Missense_Mutation_p.E19K|SKAP1_uc010dbd.1_5'UTR|SKAP1_uc010dbe.1_Missense_Mutation_p.E19K	NM_003726	NP_003717	Q86WV1	SKAP1_HUMAN	src kinase associated phosphoprotein 1 isoform	19					positive regulation of transcription from RNA polymerase II promoter|T cell receptor signaling pathway	cytoplasm|nucleus|plasma membrane	antigen binding|protein kinase binding|SH2 domain binding				0						GCCAGAAACTCTTCAGCATCT	0.373													37	138					0	0	0.002852	0	0
HOXB2	3212	broad.mit.edu	37	17	46622015	46622015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:46622015G>A	uc002inm.2	-	1	379	c.259C>T	c.(259-261)CCC>TCC	p.P87S		NM_002145	NP_002136	P14652	HXB2_HUMAN	homeobox B2	87					blood circulation	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						ggggcagcggggagtggcggc	0.478													6	9					0	0	0.006214	0	0
IGF2BP1	10642	broad.mit.edu	37	17	47118857	47118857	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:47118857C>T	uc002iom.2	+	8	1270	c.936C>T	c.(934-936)ATC>ATT	p.I312I	IGF2BP1_uc010dbj.2_Silent_p.I173I	NM_006546	NP_006537	Q9NZI8	IF2B1_HUMAN	insulin-like growth factor 2 mRNA binding	312	Necessary for interaction with ELAVL4 and binding to TAU mRNA (By similarity).|Sufficient for nuclear export.|KH 2.				CRD-mediated mRNA stabilization|negative regulation of translation|regulation of mRNA stability involved in response to stress	CRD-mediated mRNA stability complex|cytosol|dendritic spine|lamellipodium|nucleus|plasma membrane|stress granule	mRNA 3'-UTR binding|mRNA 5'-UTR binding|nucleotide binding|protein binding|translation regulator activity			kidney(1)	1						AAATCACCATCTCCTCGTAAG	0.463													17	19					0	0	0.006122	0	0
ABCC3	8714	broad.mit.edu	37	17	48745329	48745329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:48745329C>T	uc002isl.2	+	13	1821	c.1741C>T	c.(1741-1743)CCC>TCC	p.P581S		NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	581	Helical; Name=11; (By similarity).|ABC transmembrane type-1 1.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	CTTAAGACTTCCCCTCAACAT	0.537													8	31					0	0	0.000978	0	0
C17orf67	339210	broad.mit.edu	37	17	54892252	54892252	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:54892252C>T	uc010dci.2	-	2	213	c.206G>A	c.(205-207)GGA>GAA	p.G69E	C17orf67_uc002iuq.2_RNA	NM_001085430	NP_001078899	Q0P5P2	CQ067_HUMAN	hypothetical protein LOC339210 precursor	69						extracellular region					0	Breast(9;2.49e-06)					ATCGGGGAATCCGGGTTTGCT	0.498													120	375					0	0	0.003610	0	0
BZRAP1	9256	broad.mit.edu	37	17	56386733	56386733	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:56386733G>A	uc002ivx.3	-	22	4771	c.3900C>T	c.(3898-3900)CCC>CCT	p.P1300P	BZRAP1_uc002ivw.2_5'Flank|BZRAP1_uc010dcs.2_Silent_p.P1240P|BZRAP1_uc010wnt.1_Silent_p.P1300P	NM_004758	NP_004749	O95153	RIMB1_HUMAN	peripheral benzodiazepine receptor-associated	1300						mitochondrion	benzodiazepine receptor binding			upper_aerodigestive_tract(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					AAAAGGGGTCGGGCTGGGACT	0.572													11	36					0	0	0.001368	0	0
RNF43	54894	broad.mit.edu	37	17	56435835	56435835	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:56435835G>A	uc002iwf.2	-	8	3258	c.1302C>T	c.(1300-1302)CCC>CCT	p.P434P	RNF43_uc010wnv.1_Silent_p.P393P|RNF43_uc002iwh.3_Silent_p.P434P|RNF43_uc002iwg.3_Silent_p.P434P|RNF43_uc010dcw.2_Silent_p.P307P	NM_017763	NP_060233	Q68DV7	RNF43_HUMAN	ring finger protein 43 precursor	434	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane|nuclear envelope	ligase activity|protein binding|zinc ion binding			ovary(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCCGGCGTAGGGGCACTGGGC	0.642													10	32					0	0	0.002450	0	0
HSF5	124535	broad.mit.edu	37	17	56536308	56536308	+	Splice_Site	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:56536308T>A	uc002iwi.1	-	5	1667	c.1543_splice	c.e5-1	p.V515_splice		NM_001080439	NP_001073908	Q4G112	HSF5_HUMAN	heat shock transcription factor family member 5							nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|skin(1)	3	Medulloblastoma(34;0.127)|all_neural(34;0.237)					GGCATCCACCTAAAATATTAA	0.383													116	82					0	0	0.003610	0	0
MTMR4	9110	broad.mit.edu	37	17	56585613	56585613	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:56585613T>C	uc002iwj.2	-	8	684	c.574A>G	c.(574-576)AAG>GAG	p.K192E		NM_004687	NP_004678	Q9NYA4	MTMR4_HUMAN	myotubularin related protein 4	192	Myotubularin phosphatase.					cytoplasm|membrane	metal ion binding|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(34;0.127)|all_neural(34;0.237)					ACCAGCAGCTTCTGGGGGTAA	0.557													23	50					0	0	0.003330	0	0
SEPT4	5414	broad.mit.edu	37	17	56599151	56599151	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:56599151G>A	uc002iwm.1	-	7	989	c.861C>T	c.(859-861)ATC>ATT	p.I287I	SEPT4_uc002iwk.1_Silent_p.I140I|SEPT4_uc010wnw.1_Silent_p.I140I|SEPT4_uc002iwl.1_Silent_p.I140I|SEPT4_uc002iwn.1_Silent_p.I188I|SEPT4_uc002iwo.1_Silent_p.I268I|SEPT4_uc002iwp.1_3'UTR|SEPT4_uc010wnx.1_Silent_p.I302I|SEPT4_uc010wny.1_Silent_p.I279I|SEPT4_uc010dcy.1_3'UTR	NM_004574	NP_004565	O43236	SEPT4_HUMAN	septin 4 isoform 1	287					apoptosis|cell cycle|cytokinesis|regulation of apoptosis	cytoskeleton|mitochondrion|nucleus	GTP binding|GTPase activity|protein binding|structural molecule activity				0	Medulloblastoma(34;0.127)|all_neural(34;0.237)					CCTTAGCCAGGATAGGCACGA	0.562													19	34					0	0	0.008871	0	0
PRR11	55771	broad.mit.edu	37	17	57274954	57274954	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:57274954G>A	uc002ixf.1	+	8	986	c.907G>A	c.(907-909)GAT>AAT	p.D303N	PRR11_uc002ixg.1_RNA	NM_018304	NP_060774	Q96HE9	PRR11_HUMAN	proline rich 11	303										ovary(2)	2	Medulloblastoma(34;0.0922)|all_neural(34;0.101)					TAGAAAAGTCGATGTAGAGAG	0.303													16	51					0	0	0.008871	0	0
CLTC	1213	broad.mit.edu	37	17	57758365	57758365	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:57758365C>T	uc002ixq.1	+	19	3455	c.3012C>T	c.(3010-3012)CTC>CTT	p.L1004L	CLTC_uc002ixp.2_Silent_p.L1004L|CLTC_uc002ixr.1_Silent_p.L1008L	NM_004859	NP_004850	Q00610	CLH1_HUMAN	clathrin heavy chain 1	1004	Heavy chain arm.|Proximal segment.				axon guidance|epidermal growth factor receptor signaling pathway|intracellular protein transport|mitosis|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|post-Golgi vesicle-mediated transport|receptor internalization|transferrin transport	clathrin coat of coated pit|clathrin coat of trans-Golgi network vesicle|cytosol|melanosome|spindle	protein binding|structural molecule activity		CLTC/ALK(44)|CLTC/TFE3(2)	haematopoietic_and_lymphoid_tissue(33)|soft_tissue(11)|kidney(2)|ovary(1)|breast(1)	48	all_neural(34;0.0878)|Medulloblastoma(34;0.0922)					CTAATGAACTCATTGAACTGC	0.408			T	ALK|TFE3	ALCL|renal 								45	81					0	0	0.003214	0	0
NACA2	342538	broad.mit.edu	37	17	59667908	59667908	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:59667908C>T	uc002izj.2	-	1	660	c.634G>A	c.(634-636)GAA>AAA	p.E212K		NM_199290	NP_954984	Q9H009	NACA2_HUMAN	nascent-polypeptide-associated complex alpha	212	UBA.				protein transport	cytoplasm|nucleus				ovary(1)	1	all_epithelial(1;3.12e-14)					ACTGTTAATTCCATAATCGCA	0.363													38	184					0	0	0.002222	0	0
TANC2	26115	broad.mit.edu	37	17	61396398	61396398	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61396398A>G	uc002jal.3	+	9	1323	c.1300A>G	c.(1300-1302)ACT>GCT	p.T434A	TANC2_uc010wpe.1_Missense_Mutation_p.T344A	NM_025185	NP_079461	Q9HCD6	TANC2_HUMAN	tetratricopeptide repeat, ankyrin repeat and	434							binding			ovary(2)	2						CTGCCCAGGAACTCCGGAAAT	0.502													11	28					0	0	0.008291	0	0
ACE	1636	broad.mit.edu	37	17	61560476	61560476	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61560476G>A	uc002jau.1	+	9	1451	c.1429G>A	c.(1429-1431)GGG>AGG	p.G477R	ACE_uc010wpi.1_Intron|ACE_uc010ddu.1_Missense_Mutation_p.G294R|ACE_uc002jav.1_5'Flank|ACE_uc010ddv.1_5'Flank|ACE_uc010wpj.1_5'Flank|ACE_uc002jaw.1_5'Flank|ACE_uc010wpk.1_5'Flank	NM_000789	NP_000780	P12821	ACE_HUMAN	angiotensin I converting enzyme 1 isoform 1	477	Extracellular (Potential).|Peptidase M2 1.				arachidonic acid secretion|hormone catabolic process|kidney development|peptide catabolic process|regulation of smooth muscle cell migration	endosome|external side of plasma membrane|extracellular space|integral to membrane|membrane fraction|plasma membrane	actin binding|bradykinin receptor binding|carboxypeptidase activity|chloride ion binding|drug binding|metallopeptidase activity|peptidyl-dipeptidase activity|zinc ion binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4					Benazepril(DB00542)|Captopril(DB01197)|Deserpidine(DB01089)|Enalapril(DB00584)|Fosinopril(DB00492)|Lisinopril(DB00722)|Moexipril(DB00691)|Perindopril(DB00790)|Quinapril(DB00881)|Ramipril(DB00178)|Rescinnamine(DB01180)|Spirapril(DB01348)|Trandolapril(DB00519)	GTGGCGCTGGGGGGTCTTTAG	0.532													21	170					0	0	0.005443	0	0
KCNH6	81033	broad.mit.edu	37	17	61611254	61611254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61611254C>T	uc002jay.2	+	5	763	c.683C>T	c.(682-684)TCC>TTC	p.S228F	KCNH6_uc002jax.1_Missense_Mutation_p.S228F|KCNH6_uc010wpl.1_Missense_Mutation_p.S105F|KCNH6_uc010wpm.1_Missense_Mutation_p.S228F|KCNH6_uc002jaz.1_Missense_Mutation_p.S228F	NM_030779	NP_110406	Q9H252	KCNH6_HUMAN	potassium voltage-gated channel, subfamily H,	228	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|signal transduction					skin(1)	1					Ibutilide(DB00308)	CAGGTCCTGTCCCTGGGCGCG	0.687													13	49					0	0	0.001368	0	0
DCAF7	10238	broad.mit.edu	37	17	61657259	61657259	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61657259C>T	uc002jbc.2	+	4	700	c.483C>T	c.(481-483)CTC>CTT	p.L161L	DCAF7_uc002jbb.2_RNA|DCAF7_uc010wpn.1_Intron	NM_005828	NP_005819	P61962	DCAF7_HUMAN	WD-repeat protein	161					multicellular organismal development	CUL4 RING ubiquitin ligase complex|cytoplasm|nucleus	protein binding			ovary(1)	1						GAGTGAATCTCGTGTCTGGCC	0.532													13	26					0	0	0.003163	0	0
DDX42	11325	broad.mit.edu	37	17	61888459	61888459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61888459C>T	uc002jbu.2	+	14	1581	c.1324C>T	c.(1324-1326)CGG>TGG	p.R442W	DDX42_uc002jbv.2_Missense_Mutation_p.R442W|DDX42_uc002jbw.1_Missense_Mutation_p.R178W|DDX42_uc002jbx.2_Missense_Mutation_p.R178W|DDX42_uc002jby.2_5'Flank	NM_007372	NP_031398	Q86XP3	DDX42_HUMAN	DEAD box polypeptide 42 protein	442	Helicase ATP-binding.				protein localization|regulation of anti-apoptosis	Cajal body|cytoplasm|nuclear speck	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)|large_intestine(1)	5						TGCAACTTTTCGGAAGAAGAT	0.408													6	38					0	0	0.001168	0	0
PSMC5	5705	broad.mit.edu	37	17	61907655	61907655	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61907655C>T	uc002jcb.2	+	6	387	c.346C>T	c.(346-348)CTA>TTA	p.L116L	FTSJ3_uc002jca.2_5'Flank|PSMC5_uc010ddy.2_Silent_p.L93L|PSMC5_uc010ddz.2_Silent_p.L37L|PSMC5_uc002jcc.2_Silent_p.L108L|PSMC5_uc002jcd.2_Silent_p.L108L	NM_002805	NP_002796	P62195	PRS8_HUMAN	proteasome 26S ATPase subunit 5	116					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of programmed cell death|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of transcription, DNA-dependent|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus|proteasome complex	ATP binding|ATPase activity|thyrotropin-releasing hormone receptor binding|transcription cofactor activity|transcription factor binding			large_intestine(1)	1						CCGGGTGGCTCTAAGGAATGA	0.517													20	44					0	0	0.003330	0	0
GH2	2689	broad.mit.edu	37	17	61949534	61949534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61949534G>A	uc002jcj.2	-	5	664	c.602C>T	c.(601-603)TCC>TTC	p.S201F	CSH2_uc002jcg.2_Silent_p.F107F|CSH2_uc002jch.2_Silent_p.F202F|CSH2_uc002jci.2_3'UTR|CSH2_uc002jck.2_Silent_p.F202F	NM_022557	NP_072051	P01242	SOM2_HUMAN	growth hormone 2 isoform 2	Error:Variant_position_missing_in_P01242_after_alignment						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						CCATGCGCAGGAATGTCTCGA	0.582													28	71					0	0	0.007291	0	0
ERN1	2081	broad.mit.edu	37	17	62130643	62130643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:62130643G>A	uc002jdz.2	-	16	2155	c.2042C>T	c.(2041-2043)TCC>TTC	p.S681F		NM_001433	NP_001424	O75460	ERN1_HUMAN	endoplasmic reticulum to nucleus signalling 1	681	Cytoplasmic (Potential).|Protein kinase.				activation of signaling protein activity involved in unfolded protein response|apoptosis|cell cycle arrest|induction of apoptosis|mRNA processing|regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to endoplasmic reticulum membrane	ATP binding|endoribonuclease activity, producing 5'-phosphomonoesters|magnesium ion binding|protein binding|protein serine/threonine kinase activity			central_nervous_system(4)|lung(2)|stomach(1)|ovary(1)|kidney(1)	9						GATGTTGAGGGAGTGGAGGTG	0.627													7	31					0	0	0.004482	0	0
C17orf60	284021	broad.mit.edu	37	17	62462587	62462587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:62462587C>T	uc010wpz.1	+	2	936	c.101C>T	c.(100-102)CCA>CTA	p.P34L				Q7Z6M3	MILR1_HUMAN	SubName: Full=cDNA FLJ56870;	Error:Variant_position_missing_in_Q7Z6M3_after_alignment						integral to membrane|plasma membrane					0	Breast(5;6.43e-14)		BRCA - Breast invasive adenocarcinoma(8;2.18e-12)			AAGTGGGATCCAGGCCGTGTG	0.463													15	12					0	0	0.003163	0	0
LRRC37A3	374819	broad.mit.edu	37	17	62856890	62856890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:62856890G>A	uc002jey.2	-	11	3905	c.3374C>T	c.(3373-3375)CCT>CTT	p.P1125L	LRRC37A3_uc010wqg.1_Missense_Mutation_p.P243L|LRRC37A3_uc002jex.1_Missense_Mutation_p.P102L|LRRC37A3_uc010wqf.1_Missense_Mutation_p.P163L|LRRC37A3_uc010dek.1_Missense_Mutation_p.P131L	NM_199340	NP_955372	O60309	L37A3_HUMAN	leucine rich repeat containing 37, member A3	1125	Extracellular (Potential).|LRR 10.					integral to membrane					0						TGAGAAATAAGGTAAGATGTA	0.453													93	280					0	0	0.003610	0	0
AMZ2P1	201283	broad.mit.edu	37	17	62968738	62968738	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:62968738G>A	uc002jez.3	-	4		c.593C>T			AMZ2P1_uc002jfa.3_RNA|AMZ2P1_uc002jfb.3_RNA|AMZ2P1_uc010del.2_RNA					Homo sapiens cDNA FLJ32065 fis, clone OCBBF1000086, weakly similar to Archeobacterial metalloproteinase-like protein 2 (EC 3.-.-.-).												0						AACACAGAAGGCATCTTCAGG	0.353													71	29					0	0	0.003610	0	0
PRKCA	5578	broad.mit.edu	37	17	64637512	64637512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:64637512G>A	uc002jfp.1	+	4	372	c.328G>A	c.(328-330)GGA>AGA	p.G110R	PRKCA_uc002jfo.1_5'UTR	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	110	Phorbol-ester/DAG-type 2.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	CCACACTTACGGAAGCCCCAC	0.438													39	94					0	0	0.003214	0	0
PRKCA	5578	broad.mit.edu	37	17	64637530	64637530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:64637530G>A	uc002jfp.1	+	4	390	c.346G>A	c.(346-348)GAT>AAT	p.D116N	PRKCA_uc002jfo.1_5'UTR	NM_002737	NP_002728	P17252	KPCA_HUMAN	protein kinase C, alpha	116	Phorbol-ester/DAG-type 2.				activation of phospholipase C activity|energy reserve metabolic process|induction of apoptosis by extracellular signals|intracellular signal transduction|mRNA metabolic process|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of blood vessel endothelial cell migration|regulation of insulin secretion|response to interleukin-1|synaptic transmission	cytosol|endoplasmic reticulum|membrane fraction|nucleoplasm|plasma membrane	ATP binding|enzyme binding|histone kinase activity (H3-T6 specific)|protein kinase C activity|zinc ion binding			central_nervous_system(4)|large_intestine(1)|stomach(1)|lung(1)|breast(1)|ovary(1)	9			BRCA - Breast invasive adenocarcinoma(6;4.68e-09)		Phosphatidylserine(DB00144)|Vitamin E(DB00163)	CACCTTCTGCGATCACTGTGG	0.468													42	91					0	0	0.003214	0	0
CACNG5	27091	broad.mit.edu	37	17	64873459	64873459	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:64873459C>T	uc010wqi.1	+	2	246	c.9C>T	c.(7-9)GCC>GCT	p.A3A	CACNG5_uc002jfr.2_Silent_p.A3A|CACNG5_uc010wqj.1_Silent_p.A3A	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	3					regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			AGATGAGTGCCTGCGGGAGGA	0.637													21	14					0	0	0.002780	0	0
CACNG5	27091	broad.mit.edu	37	17	64881222	64881222	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:64881222C>T	uc010wqi.1	+	6	930	c.693C>T	c.(691-693)TTC>TTT	p.F231F	CACNG5_uc010wqj.1_Silent_p.F231F	NM_145811	NP_665810	Q9UF02	CCG5_HUMAN	voltage-dependent calcium channel gamma-5	231				SAGVMSVYLFMKRYTAEDMYRPHPGFYRPRLSNCSDYSGQF LHPDAWVRGRSPSDISSEASLQMNSNYPALLKCPDYDQMSS SPC -> VKPVTLSMDRLGLGTAPLSRGEWGWGRRDIPQPF WTPDHPLYFPSSSQNVSLSYLSGSPPARMSPGPCSCPHVHF PPHSSCVLCRPQPREMRQAPAASPSSAVFSL (in Ref. 1; AAF03089).	regulation of alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|postsynaptic density|postsynaptic membrane	voltage-gated calcium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(6;1.61e-08)			CAGGCCAGTTCCTACACCCAG	0.627													24	27					0	0	0.005443	0	0
ABCA8	10351	broad.mit.edu	37	17	66878041	66878041	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:66878041C>T	uc002jhp.2	-	29	3968	c.3789G>A	c.(3787-3789)AAG>AAA	p.K1263K	ABCA8_uc002jhq.2_Silent_p.K1303K|ABCA8_uc010wqq.1_Silent_p.K1298K	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1263	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TCGTGGCTATCTTATTCTTCC	0.463													19	72					0	0	0.006122	0	0
ABCA8	10351	broad.mit.edu	37	17	66883609	66883609	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:66883609G>A	uc002jhp.2	-	23	3242	c.3063C>T	c.(3061-3063)TCC>TCT	p.S1021S	ABCA8_uc002jhq.2_Silent_p.S1061S|ABCA8_uc010wqq.1_Silent_p.S1061S|ABCA8_uc010wqr.1_Silent_p.S1000S	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1021						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					AAGCAGAAGGGGAGAGTCCGG	0.433													59	145					0	0	0.003610	0	0
SOX9	6662	broad.mit.edu	37	17	70118998	70118998	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:70118998G>A	uc002jiw.2	+	2	942	c.570G>A	c.(568-570)GAG>GAA	p.E190E	uc002jiv.2_5'Flank	NM_000346	NP_000337	P48436	SOX9_HUMAN	transcription factor SOX9	190					cAMP-mediated signaling|negative regulation of transcription, DNA-dependent|positive regulation of branching involved in ureteric bud morphogenesis|protein complex assembly|renal vesicle induction	nucleus|protein complex	core promoter sequence-specific DNA binding|enhancer binding|protein kinase A catalytic subunit binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription				0		Colorectal(1115;0.245)	STAD - Stomach adenocarcinoma(260;0.119)			CGGAGGCAGAGGAGGCCACGG	0.667													31	37					0	0	0.001786	0	0
FAM104A	84923	broad.mit.edu	37	17	71223333	71223334	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:71223333_71223334GG>AA	uc002jji.3	-	2	379_380	c.291_292CC>TT	c.(289-294)AACCCT>AATTCT	p.P98S	FAM104A_uc002jjj.3_Missense_Mutation_p.P98S	NM_032837	NP_116226	Q969W3	F104A_HUMAN	hypothetical protein LOC84923 isoform 2	98	Ser-rich.										0			LUSC - Lung squamous cell carcinoma(166;0.197)			TGAAAGACAGGGTTTCTGCTAC	0.411													40	59					0	0	0.004672	0	0
KIF19	124602	broad.mit.edu	37	17	72347046	72347046	+	Splice_Site	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:72347046T>G	uc002jkm.3	+	12	1725	c.1587_splice	c.e12+2	p.K529_splice	KIF19_uc002jkj.2_Missense_Mutation_p.V530G|KIF19_uc002jkk.2_Missense_Mutation_p.V488G|KIF19_uc002jkl.2_Splice_Site_p.K487_splice	NM_153209	NP_694941	Q2TAC6	KIF19_HUMAN	kinesin family member 19						microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						AAGCAGAAGGTGTCCAGGGTT	0.483													7	75					0	0	0.003080	0	0
GPR142	350383	broad.mit.edu	37	17	72368373	72368373	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:72368373G>A	uc010wqy.1	+	4	1023	c.1023G>A	c.(1021-1023)CGG>CGA	p.R341R	GPR142_uc010wqx.1_Silent_p.R253R	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	341	Cytoplasmic (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						ACCGGCTACGGAGGAGGGGCC	0.637													5	25					0	0	0.003080	0	0
USH1G	124590	broad.mit.edu	37	17	72916142	72916143	+	Missense_Mutation	DNP	AT	GA	GA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:72916142_72916143AT>GA	uc002jme.1	-	2	971_972	c.788_789AT>TC	c.(787-789)AAT>ATC	p.N263I	USH1G_uc010wro.1_Missense_Mutation_p.N160I	NM_173477	NP_775748	Q495M9	USH1G_HUMAN	Usher syndrome 1G protein	263					equilibrioception|photoreceptor cell maintenance|sensory perception of sound	actin cytoskeleton				skin(2)	2	all_lung(278;0.172)|Lung NSC(278;0.207)					ACTCCTTGGGATTGGCGTAGGT	0.698													17	28					0	0	0.004672	0	0
C17orf28	283987	broad.mit.edu	37	17	72952020	72952020	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:72952020C>T	uc002jmj.3	-	13	1652	c.1503G>A	c.(1501-1503)GTG>GTA	p.V501V	C17orf28_uc002jmi.2_5'Flank|C17orf28_uc010wrs.1_Silent_p.V300V	NM_030630	NP_085133	Q8IV36	CQ028_HUMAN	hypothetical protein LOC283987	501						integral to membrane|plasma membrane	protein binding				0	all_lung(278;0.151)|Lung NSC(278;0.185)					TGTTGGCAGTCACCATGGACA	0.627													31	62					0	0	0.003271	0	0
KIAA0195	9772	broad.mit.edu	37	17	73491705	73491705	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:73491705C>T	uc002jnz.3	+	22	3200	c.2925C>T	c.(2923-2925)TTC>TTT	p.F975F	KIAA0195_uc010wsa.1_Silent_p.F985F|KIAA0195_uc010wsb.1_Silent_p.F615F|KIAA0195_uc002job.3_5'UTR	NM_014738	NP_055553	Q12767	K0195_HUMAN	hypothetical protein LOC9772	975					ATP biosynthetic process|cation transport	integral to membrane	ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism			ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.94e-10)|Breast(9;1.85e-09)|all_lung(278;0.246)		all cancers(21;5.01e-07)|Epithelial(20;5e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			TGCCCCTTTTCACCGACTGCA	0.642													44	112					0	0	0.003214	0	0
LLGL2	3993	broad.mit.edu	37	17	73559887	73559887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:73559887G>A	uc002joh.2	+	9	1035	c.881G>A	c.(880-882)GGG>GAG	p.G294E	LLGL2_uc002jog.1_Missense_Mutation_p.G294E|LLGL2_uc010dgf.1_Missense_Mutation_p.G294E|LLGL2_uc002joi.2_Missense_Mutation_p.G294E|LLGL2_uc010dgg.1_Missense_Mutation_p.G294E|LLGL2_uc002joj.2_Missense_Mutation_p.G283E|LLGL2_uc010wsd.1_5'UTR|uc002jok.2_5'Flank	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	294	WD 6.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			ACTAGGCAGGGGTAGGTATCC	0.532													16	62					0	0	0.004007	0	0
LLGL2	3993	broad.mit.edu	37	17	73564710	73564710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:73564710C>T	uc002joh.2	+	11	1344	c.1190C>T	c.(1189-1191)CCG>CTG	p.P397L	LLGL2_uc002joi.2_Missense_Mutation_p.P397L|LLGL2_uc010dgg.1_Missense_Mutation_p.P397L|LLGL2_uc002joj.2_Missense_Mutation_p.P386L|LLGL2_uc010wsd.1_Intron	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	397	WD 8.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			TCCAACATCCCGCTGAAGCTG	0.652													9	35					0	0	0.006214	0	0
LLGL2	3993	broad.mit.edu	37	17	73569201	73569202	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:73569201_73569202CC>TT	uc002joh.2	+	20	2721_2722	c.2567_2568CC>TT	c.(2566-2568)GCC>GTT	p.A856V	LLGL2_uc002joi.2_Missense_Mutation_p.A856V|LLGL2_uc010dgg.1_Missense_Mutation_p.A856V|LLGL2_uc002joj.2_Missense_Mutation_p.A845V|LLGL2_uc010wsd.1_Missense_Mutation_p.A483V	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	856	WD 13.				cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			AGTCGTCGAGCCGAGGACTACG	0.653													20	15					0	0	0.004672	0	0
H3F3B	3021	broad.mit.edu	37	17	73775010	73775010	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:73775010A>T	uc002jpl.2	-	3	296	c.163T>A	c.(163-165)TAT>AAT	p.Y55N		NM_005324	NP_005315	P84243	H33_HUMAN	H3 histone, family 3B	55					blood coagulation|nucleosome assembly	nucleoplasm|nucleosome	DNA binding			ovary(1)	1	all_cancers(13;1.5e-07)		all cancers(21;2.61e-06)|Epithelial(20;7.39e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|LUSC - Lung squamous cell carcinoma(166;0.154)			GACTTCTGATAACGACGAATC	0.632											OREG0024740	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	38					0	0	0.006214	0	0
UNC13D	201294	broad.mit.edu	37	17	73832957	73832957	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:73832957G>A	uc002jpp.2	-	13	1478	c.1098C>T	c.(1096-1098)TTC>TTT	p.F366F	UNC13D_uc010wsk.1_Silent_p.F366F|UNC13D_uc002jpq.1_Silent_p.F16F|UNC13D_uc010dgq.1_Silent_p.F163F	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	366	Interaction with RAB27A.				positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			AGCTGCTGGGGAACTCCAGGC	0.627									Familial_Hemophagocytic_Lymphohistiocytosis				14	76					0	0	0.003163	0	0
TRIM47	91107	broad.mit.edu	37	17	73872477	73872477	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:73872477C>T	uc002jpw.2	-	3	895	c.868G>A	c.(868-870)GAG>AAG	p.E290K	TRIM47_uc002jpv.2_Missense_Mutation_p.E52K	NM_033452	NP_258411	Q96LD4	TRI47_HUMAN	tripartite motif-containing 47	290						cytoplasm|nucleus	zinc ion binding			ovary(2)|prostate(1)|lung(1)|breast(1)	5			Epithelial(20;4.23e-06)|all cancers(21;5.24e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00092)|LUSC - Lung squamous cell carcinoma(166;0.154)			TCCCCCTCCTCGATGAAGCCC	0.682													10	15					0	0	0.000978	0	0
EVPL	2125	broad.mit.edu	37	17	74003218	74003218	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:74003218G>A	uc002jqi.2	-	22	6296	c.6068C>T	c.(6067-6069)TCC>TTC	p.S2023F	EVPL_uc010wss.1_Missense_Mutation_p.S2045F|EVPL_uc010wst.1_Missense_Mutation_p.S1493F	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	2023	Globular 2.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGGGGAGGCGGAGCGGTAGCA	0.687													6	16					0	0	0.001984	0	0
EVPL	2125	broad.mit.edu	37	17	74010615	74010615	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:74010615G>A	uc002jqi.2	-	18	2493	c.2265C>T	c.(2263-2265)TTC>TTT	p.F755F	EVPL_uc010wss.1_Silent_p.F777F|EVPL_uc010wst.1_Silent_p.F225F	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	755	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TGCAGTTCTTGAACTGCTGGT	0.652													14	23					0	0	0.004990	0	0
UBE2O	63893	broad.mit.edu	37	17	74387359	74387359	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:74387359G>A	uc002jrm.3	-	18	3609	c.3544C>T	c.(3544-3546)CAA>TAA	p.Q1182*	UBE2O_uc002jrl.3_Nonsense_Mutation_p.Q786*	NM_022066	NP_071349	Q9C0C9	UBE2O_HUMAN	ubiquitin-conjugating enzyme E2O	1182							ATP binding|ubiquitin-protein ligase activity			breast(2)|skin(2)|lung(1)	5						GGTTCTTGTTGGCCGGAGTCT	0.687													9	64					0	0	0.006214	0	0
PRCD	768206	broad.mit.edu	37	17	74538647	74538648	+	Silent	DNP	TC	GT	GT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:74538647_74538648TC>GT	uc002jrx.2	+	3	259_260	c.156_157TC>GT	c.(154-159)CCTCTG>CCGTTG	p.52_53PL>PL	CYGB_uc002jrv.1_Intron|PRCD_uc002jrw.1_5'UTR|PRCD_uc002jry.1_5'UTR|PRCD_uc002jrz.1_5'Flank	NM_001077620	NP_001071088	Q00LT1	PRCD_HUMAN	progressive rod-cone degeneration	52_53					response to stimulus|visual perception	cytoplasm|integral to membrane					0						AGAAAGAACCTCTGAAGTAAGC	0.599													23	17					0	0	0.004672	0	0
MGAT5B	146664	broad.mit.edu	37	17	74942444	74942444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:74942444C>T	uc002jtj.2	+	1	113	c.50C>T	c.(49-51)CCA>CTA	p.P17L	MGAT5B_uc002jth.2_Intron|MGAT5B_uc002jti.2_Intron			Q3V5L5	MGT5B_HUMAN	RecName: Full=Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase B;          EC=2.4.1.155;          EC=2.4.1.-; AltName: Full=Alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase B; AltName: Full=Mannoside acetylglucosaminyltransferase 5B; AltName: Full=N-acetylglucosaminyl-transferase Vb; AltName: Full=GlcNAc-T Vb;          Short=hGnTVb;          Short=GNT-Vb; AltName: Full=N-acetylglucosaminyltransferase IX;          Short=GNT-IX;	Error:Variant_position_missing_in_Q3V5L5_after_alignment						Golgi membrane|integral to membrane	alpha-1,6-mannosyl-glycoprotein 6-beta-N-acetylglucosaminyltransferase activity|metal ion binding			ovary(2)|skin(1)	3						TGTGTCTGCCCATCCCTCCCA	0.657													4	19					0	0	0.000602	0	0
DNAH17	8632	broad.mit.edu	37	17	76455235	76455235	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:76455235C>T	uc010dhp.1	-	6	931	c.709G>A	c.(709-711)GCC>ACC	p.A237T	DNAH17_uc002jvs.2_RNA					SubName: Full=DNAH17 variant protein; Flags: Fragment;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CCGGCGGCGGCCGTGGACTTG	0.552													47	224					0	0	0.003610	0	0
DNAH17	8632	broad.mit.edu	37	17	76554246	76554246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:76554246C>T	uc002jvv.1	-	10	1334	c.1228G>A	c.(1228-1230)GAA>AAA	p.E410K						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CGGAAAGTTTCGTTCTCTGAG	0.453													9	23					0	0	0.004482	0	0
SLC38A10	124565	broad.mit.edu	37	17	79244725	79244725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:79244725G>A	uc002jzz.1	-	10	1499	c.1124C>T	c.(1123-1125)TCC>TTC	p.S375F	SLC38A10_uc002jzy.1_Missense_Mutation_p.S293F|SLC38A10_uc002kab.2_Missense_Mutation_p.S375F	NM_001037984	NP_001033073	Q9HBR0	S38AA_HUMAN	solute carrier family 38, member 10 isoform a	375					amino acid transport|sodium ion transport	integral to membrane				pancreas(1)|skin(1)	2	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			CACCTGGGAGGAAAGTGCGTT	0.617													10	29					0	0	0.001855	0	0
HGS	9146	broad.mit.edu	37	17	79662044	79662044	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:79662044G>A	uc002kbg.2	+	13	1143	c.1066G>A	c.(1066-1068)GAG>AAG	p.E356K		NM_004712	NP_004703	O14964	HGS_HUMAN	hepatocyte growth factor-regulated tyrosine	356	Interaction with SNX1 (By similarity).|Pro-rich.				cellular membrane organization|endosome transport|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of cell proliferation|negative regulation of epidermal growth factor receptor signaling pathway|negative regulation of JAK-STAT cascade|regulation of protein catabolic process	cytosol|early endosome membrane|multivesicular body membrane	metal ion binding|protein domain specific binding			ovary(1)	1	all_neural(118;0.0878)|all_lung(278;0.23)		BRCA - Breast invasive adenocarcinoma(99;0.0101)|OV - Ovarian serous cystadenocarcinoma(97;0.0955)			GCCCCTGACGGAGCCGGCTGC	0.667													8	41					0	0	0.003080	0	0
GPS1	2873	broad.mit.edu	37	17	80013902	80013902	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:80013902T>C	uc002kdl.1	+	8	917	c.872T>C	c.(871-873)ATC>ACC	p.I291T	GPS1_uc002kdk.1_Missense_Mutation_p.I327T|GPS1_uc010dij.1_Missense_Mutation_p.I326T|GPS1_uc002kdm.1_Missense_Mutation_p.I271T|GPS1_uc002kdn.1_Missense_Mutation_p.I287T|GPS1_uc002kdo.1_Missense_Mutation_p.I290T|GPS1_uc010wvh.1_Missense_Mutation_p.I283T	NM_004127	NP_004118	Q13098	CSN1_HUMAN	G protein pathway suppressor 1 isoform 2	291					cell cycle|cullin deneddylation|inactivation of MAPK activity|JNK cascade	cytoplasm|signalosome	GTPase inhibitor activity|protein binding			central_nervous_system(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			AACGTGGCCATCTACGGTGGC	0.662													7	12					0	0	0.003080	0	0
DUS1L	64118	broad.mit.edu	37	17	80018758	80018758	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:80018758G>A	uc002kdq.2	-	8	1341	c.922C>T	c.(922-924)CTG>TTG	p.L308L	DUS1L_uc002kdp.2_Silent_p.L177L|DUS1L_uc002kdr.2_Silent_p.L308L|DUS1L_uc002kds.2_RNA|DUS1L_uc002kdt.2_RNA	NM_022156	NP_071439	Q6P1R4	DUS1L_HUMAN	PP3111 protein	308					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			skin(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			CGCAGCTTCAGCTCCTGGCTC	0.672													4	26					0	0	0.000602	0	0
DUS1L	64118	broad.mit.edu	37	17	80020802	80020802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:80020802G>A	uc002kdq.2	-	4	864	c.445C>T	c.(445-447)CGT>TGT	p.R149C	DUS1L_uc002kdp.2_Missense_Mutation_p.R18C|DUS1L_uc002kdr.2_Missense_Mutation_p.R149C|DUS1L_uc002kds.2_RNA|DUS1L_uc002kdt.2_RNA|DUS1L_uc010wvi.1_Missense_Mutation_p.R132C	NM_022156	NP_071439	Q6P1R4	DUS1L_HUMAN	PP3111 protein	149					tRNA processing		flavin adenine dinucleotide binding|tRNA dihydrouridine synthase activity			skin(1)	1	all_neural(118;0.0878)|Ovarian(332;0.227)|all_lung(278;0.246)		BRCA - Breast invasive adenocarcinoma(99;0.0114)|OV - Ovarian serous cystadenocarcinoma(97;0.0211)			GGGAAGACACGGATTTTGCAC	0.607													9	31					0	0	0.008291	0	0
SECTM1	6398	broad.mit.edu	37	17	80280141	80280141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:80280141C>T	uc002keo.2	-	5	1041	c.643G>A	c.(643-645)GAG>AAG	p.E215K	SECTM1_uc002ken.2_Missense_Mutation_p.E213K|SECTM1_uc002kep.2_3'UTR	NM_003004	NP_002995	Q8WVN6	SCTM1_HUMAN	secreted and transmembrane 1 precursor	215	Cytoplasmic (Potential).				immune response|mesoderm development|positive regulation of I-kappaB kinase/NF-kappaB cascade	extracellular space|Golgi apparatus|integral to membrane|plasma membrane	cytokine activity|signal transducer activity				0	Breast(20;0.000675)|all_neural(118;0.0804)|Lung NSC(278;0.128)|all_lung(278;0.145)|Ovarian(332;0.249)		OV - Ovarian serous cystadenocarcinoma(97;0.00928)|BRCA - Breast invasive adenocarcinoma(99;0.0833)			GGGGTGGGCTCGGAGTCTGGG	0.637													22	33					0	0	0.001882	0	0
TBCD	6904	broad.mit.edu	37	17	80758854	80758854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:80758854C>T	uc002kfz.2	+	9	1062	c.932C>T	c.(931-933)CCG>CTG	p.P311L	TBCD_uc002kfx.1_Missense_Mutation_p.P294L|TBCD_uc002kfy.1_Missense_Mutation_p.P311L	NM_005993	NP_005984	Q9BTW9	TBCD_HUMAN	beta-tubulin cofactor D	311					'de novo' posttranslational protein folding|adherens junction assembly|negative regulation of cell-substrate adhesion|negative regulation of microtubule polymerization|post-chaperonin tubulin folding pathway|tight junction assembly	adherens junction|cytoplasm|lateral plasma membrane|microtubule|tight junction	beta-tubulin binding|chaperone binding|GTPase activator activity				0	Breast(20;0.000523)|all_neural(118;0.0779)	all_cancers(8;0.0266)|all_epithelial(8;0.0696)	OV - Ovarian serous cystadenocarcinoma(97;0.0868)|BRCA - Breast invasive adenocarcinoma(99;0.18)			TTCCTGAAGCCGAAGGTGGCA	0.662													24	15					0	0	0.003330	0	0
METRNL	284207	broad.mit.edu	37	17	81052048	81052048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:81052048G>A	uc002kgh.2	+	4	789	c.664G>A	c.(664-666)GAC>AAC	p.D222N	METRNL_uc002kgi.2_Missense_Mutation_p.D140N	NM_001004431	NP_001004431	Q641Q3	METRL_HUMAN	meteorin, glial cell differentiation	222						extracellular region					0	Breast(20;0.000443)|all_neural(118;0.0779)		BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			TGAGCGGCAGGACTCAGCCAT	0.642													66	43					0	0	0.003610	0	0
SMCHD1	23347	broad.mit.edu	37	18	2718232	2718232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:2718232G>A	uc002klm.3	+	18	2526	c.2337G>A	c.(2335-2337)ATG>ATA	p.M779I	SMCHD1_uc002klk.3_RNA|SMCHD1_uc002kll.3_RNA	NM_015295	NP_056110	A6NHR9	SMHD1_HUMAN	structural maintenance of chromosomes flexible	779					chromosome organization		ATP binding				0						TTAAAAAAATGGGTGAGTTCT	0.284													14	24					0	0	0.004007	0	0
DLGAP1	9229	broad.mit.edu	37	18	3879493	3879493	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:3879493C>T	uc002kmf.2	-	1	643	c.576G>A	c.(574-576)AAG>AAA	p.K192K	DLGAP1_uc010wyz.1_Silent_p.K192K|DLGAP1_uc002kmk.2_Silent_p.K192K|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	192					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				TGGGCCGGGCCTTGGGCTCCG	0.697													42	17					0	0	0.003214	0	0
DLGAP1	9229	broad.mit.edu	37	18	3880031	3880031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:3880031C>T	uc002kmf.2	-	1	105	c.38G>A	c.(37-39)GGG>GAG	p.G13E	DLGAP1_uc010wyz.1_Missense_Mutation_p.G13E|DLGAP1_uc002kmk.2_Missense_Mutation_p.G13E|uc002kml.1_Intron	NM_004746	NP_004737	O14490	DLGP1_HUMAN	discs large homolog-associated protein 1 isoform	13					synaptic transmission	cell junction|postsynaptic density|postsynaptic membrane				ovary(2)|pancreas(1)|skin(1)	4		Colorectal(8;0.0257)				GCAGGTGACCCCGTGGTGATG	0.662													7	11					0	0	0.001984	0	0
LAMA1	284217	broad.mit.edu	37	18	7008537	7008537	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:7008537G>A	uc002knm.2	-	28	4166	c.4072C>T	c.(4072-4074)CTT>TTT	p.L1358F	LAMA1_uc010wzj.1_Missense_Mutation_p.L834F	NM_005559	NP_005550	P25391	LAMA1_HUMAN	laminin, alpha 1 precursor	1358	Laminin IV type A 2.				axon guidance|cell adhesion|cell surface receptor linked signaling pathway|regulation of cell adhesion|regulation of cell migration|regulation of embryonic development	extracellular space|laminin-1 complex|laminin-3 complex	extracellular matrix structural constituent|receptor binding			ovary(8)|large_intestine(4)|upper_aerodigestive_tract(2)|breast(2)|skin(2)|pancreas(2)|central_nervous_system(1)	21		Colorectal(10;0.172)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	TTCTCTAAAAGAGATGCAACC	0.453													22	9					0	0	0.001523	0	0
ANKRD12	23253	broad.mit.edu	37	18	9258620	9258620	+	Silent	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:9258620G>T	uc002knv.2	+	9	5612	c.5355G>T	c.(5353-5355)CGG>CGT	p.R1785R	ANKRD12_uc002knw.2_Silent_p.R1762R|ANKRD12_uc002knx.2_Silent_p.R1762R|ANKRD12_uc010dkx.1_Silent_p.R1492R	NM_015208	NP_056023	Q6UB98	ANR12_HUMAN	ankyrin repeat domain 12 isoform 1	1785						nucleus				ovary(2)|central_nervous_system(1)	3						ACCATCCACGGAAAAGGAAAG	0.418													37	13					1.30998e-17	1.85531e-17	0.005524	1	0
TUBB6	84617	broad.mit.edu	37	18	12325642	12325643	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:12325642_12325643CC>TT	uc002kqw.2	+	4	899_900	c.854_855CC>TT	c.(853-855)ACC>ATT	p.T285I	TUBB6_uc002kqv.2_Missense_Mutation_p.T213I|TUBB6_uc010dld.2_RNA|TUBB6_uc002kqx.2_Missense_Mutation_p.T248I|TUBB6_uc002kqy.2_Intron	NM_032525	NP_115914	Q9BUF5	TBB6_HUMAN	tubulin, beta 6	285					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0				READ - Rectum adenocarcinoma(1;0.0649)		CGGGCCCTGACCGTGCCCGAGC	0.683													25	6					0	0	0.004672	0	0
CEP192	55125	broad.mit.edu	37	18	13059241	13059241	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:13059241C>T	uc010xac.1	+	21	4498	c.4418C>T	c.(4417-4419)ACC>ATC	p.T1473I	CEP192_uc010dlf.1_RNA|CEP192_uc010xad.1_Missense_Mutation_p.T998I|CEP192_uc002kru.2_RNA|CEP192_uc002krv.2_5'UTR|CEP192_uc002krs.1_Missense_Mutation_p.T1214I	NM_032142	NP_115518	E9PF99	E9PF99_HUMAN	centrosomal protein 192kDa	1473										ovary(4)|pancreas(1)	5						GATGCTGAGACCATCGTACAG	0.463													37	19					0	0	0.005524	0	0
MC2R	4158	broad.mit.edu	37	18	13885095	13885095	+	Silent	SNP	G	A	A	rs149161443	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:13885095G>A	uc002ksp.1	-	2	600	c.423C>T	c.(421-423)ATC>ATT	p.I141I		NM_000529	NP_000520	Q01718	ACTHR_HUMAN	melanocortin 2 receptor	141	Cytoplasmic (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	corticotropin receptor activity|protein binding			ovary(4)|skin(1)	5					Corticotropin(DB01285)|Cosyntropin(DB01284)	GCATGGTCACGATGCTGTGGT	0.582													12	20					0	0	0.000978	0	0
POTEC	388468	broad.mit.edu	37	18	14542791	14542791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:14542791C>T	uc010dln.2	-	1	809	c.355G>A	c.(355-357)GCT>ACT	p.A119T	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	119										skin(3)	3						TCTCCCCAAGCGCCCACGTTG	0.597													8	69					0	0	0.008291	0	0
POTEC	388468	broad.mit.edu	37	18	14543007	14543007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:14543007C>T	uc010dln.2	-	1	593	c.139G>A	c.(139-141)GGA>AGA	p.G47R	POTEC_uc010xaj.1_RNA	NM_001137671	NP_001131143	B2RU33	POTEC_HUMAN	ANKRD26-like family B, member 2	47										skin(3)	3						TCGTGGTCTCCAGAAGTGCCC	0.577													23	83					0	0	0.002780	0	0
LOC644669	644669	broad.mit.edu	37	18	15316654	15316654	+	RNA	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:15316654A>G	uc002ktd.1	-	5		c.380T>C				NR_027417				Homo sapiens cDNA FLJ40312 fis, clone TESTI2029880.												0						TTTGAAGAGGAATTCACTGTA	0.328													4	0					0	0	0.000602	0	0
DSG1	1828	broad.mit.edu	37	18	28911671	28911671	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:28911671G>A	uc002kwp.2	+	6	737	c.525G>A	c.(523-525)CTG>CTA	p.L175L		NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	175	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			TAGATACACTGGTGATGATAC	0.333													7	8					0	0	0.003080	0	0
DSG4	147409	broad.mit.edu	37	18	28968349	28968349	+	Missense_Mutation	SNP	C	T	T	rs36040686	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:28968349C>T	uc002kwq.2	+	4	371	c.236C>T	c.(235-237)TCG>TTG	p.S79L	DSG4_uc002kwr.2_Missense_Mutation_p.S79L	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	79	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			GACTGCGAATCGAACCAGAAG	0.353													9	11					0	0	0.006214	0	0
DSG3	1830	broad.mit.edu	37	18	29044212	29044212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:29044212G>A	uc002kws.2	+	9	1247	c.1138G>A	c.(1138-1140)GGA>AGA	p.G380R		NM_001944	NP_001935	P32926	DSG3_HUMAN	desmoglein 3 preproprotein	380	Cadherin 3.|Extracellular (Potential).				cellular component disassembly involved in apoptosis|homophilic cell adhesion	cytosol|desmosome|integral to membrane	calcium ion binding	p.G380E(1)		skin(4)|ovary(3)|lung(1)|central_nervous_system(1)	9			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			TGTAAGAGAAGGAATTGCATT	0.388													14	28					0	0	0.002450	0	0
KIAA1012	22878	broad.mit.edu	37	18	29487477	29487477	+	Silent	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:29487477A>T	uc002kxc.3	-	9	1699	c.1335T>A	c.(1333-1335)ACT>ACA	p.T445T	KIAA1012_uc002kxb.3_Silent_p.T391T|KIAA1012_uc002kxd.3_RNA|KIAA1012_uc002kxe.2_Silent_p.T445T	NM_014939	NP_055754	Q9Y2L5	TPPC8_HUMAN	hypothetical protein LOC22878	445					ER to Golgi vesicle-mediated transport	cis-Golgi network					0						CTTTCTTTGCAGTATGATAGC	0.378													10	31					0	0	0.008291	0	0
ASXL3	80816	broad.mit.edu	37	18	31318725	31318725	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:31318725G>A	uc010dmg.1	+	11	1412	c.1357G>A	c.(1357-1359)GAA>AAA	p.E453K	ASXL3_uc002kxq.2_Missense_Mutation_p.E160K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	453					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AATTCAGGAGGAAATTGCAGA	0.393													19	43					0	0	0.003954	0	0
ASXL3	80816	broad.mit.edu	37	18	31324329	31324329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:31324329G>A	uc010dmg.1	+	12	4572	c.4517G>A	c.(4516-4518)AGG>AAG	p.R1506K	ASXL3_uc002kxq.2_Missense_Mutation_p.R1213K	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1506					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						AGACCAGTGAGGACAGAGGCA	0.557											OREG0024911	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	21					0	0	0.000602	0	0
DTNA	1837	broad.mit.edu	37	18	32398181	32398181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:32398181C>T	uc010dmn.1	+	7	764	c.763C>T	c.(763-765)CGC>TGC	p.R255C	DTNA_uc002kxu.2_Missense_Mutation_p.R255C|DTNA_uc010xbx.1_Intron|DTNA_uc002kxv.3_Missense_Mutation_p.R255C|DTNA_uc002kxw.2_Missense_Mutation_p.R255C|DTNA_uc002kxx.2_Missense_Mutation_p.R255C|DTNA_uc010dmj.2_Missense_Mutation_p.R255C|DTNA_uc002kxz.2_Missense_Mutation_p.R255C|DTNA_uc002kxy.2_Missense_Mutation_p.R255C|DTNA_uc010dmk.1_RNA|DTNA_uc010dml.2_Missense_Mutation_p.R255C|DTNA_uc002kyb.3_Missense_Mutation_p.R255C|DTNA_uc010dmm.2_Missense_Mutation_p.R255C|DTNA_uc010xby.1_Missense_Mutation_p.R5C|DTNA_uc010dmo.2_5'Flank|DTNA_uc002kyd.3_5'Flank|DTNA_uc010xbz.1_5'Flank|DTNA_uc010xca.1_5'Flank|DTNA_uc002kye.2_5'Flank	NM_001390	NP_001381	Q9Y4J8	DTNA_HUMAN	dystrobrevin alpha isoform 1	255	Interaction with MAGEE1 (By similarity).|ZZ-type.				neuromuscular synaptic transmission|signal transduction|striated muscle contraction	cell junction|cytoplasm|synapse	calcium ion binding|protein binding|zinc ion binding				0						GATGGGATTTCGCTACCGATG	0.468													12	36					0	0	0.001855	0	0
ZNF24	7572	broad.mit.edu	37	18	32917642	32917642	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:32917642T>A	uc002kyt.2	-	4	818	c.661A>T	c.(661-663)ATG>TTG	p.M221L	ZNF24_uc002kys.2_Missense_Mutation_p.M221L	NM_006965	NP_008896	P17028	ZNF24_HUMAN	zinc finger protein 24	221					myelination|negative regulation of transcription, DNA-dependent|viral reproduction	nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GGAACACCCATATTGAGAGTG	0.408													70	30					0	0	0.003610	0	0
SYT4	6860	broad.mit.edu	37	18	40853613	40853613	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:40853613G>A	uc002law.2	-	2	1150	c.781C>T	c.(781-783)CTC>TTC	p.L261F	SYT4_uc010dng.2_Intron|SYT4_uc010xcm.1_Missense_Mutation_p.L243F|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	261	Phospholipid binding (Probable).|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						ATTCCCGAGAGAGGAATTAGA	0.338													23	12					0	0	0.003330	0	0
SLC14A2	8170	broad.mit.edu	37	18	43205741	43205741	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:43205741G>A	uc010dnj.2	+	4	565	c.244G>A	c.(244-246)GAC>AAC	p.D82N	SLC14A2_uc002lbb.2_Missense_Mutation_p.D82N|SLC14A2_uc002lbe.2_Missense_Mutation_p.D82N	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	82						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						GGCCCATCGGGACTCAGCAGG	0.507													10	9					0	0	0.006214	0	0
SLC14A2	8170	broad.mit.edu	37	18	43248391	43248391	+	Missense_Mutation	SNP	G	A	A	rs148964498	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:43248391G>A	uc010dnj.2	+	16	2306	c.1985G>A	c.(1984-1986)GGT>GAT	p.G662D	SLC14A2_uc002lbe.2_Missense_Mutation_p.G662D	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	662						apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						TCAGACAAAGGTGACTACTAC	0.547													13	23					0	0	0.001855	0	0
SLC14A1	6563	broad.mit.edu	37	18	43328349	43328349	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:43328349A>C	uc010xcn.1	+	10	1274	c.955A>C	c.(955-957)ACG>CCG	p.T319P	SLC14A1_uc010dnk.2_Missense_Mutation_p.T375P|SLC14A1_uc002lbf.3_Missense_Mutation_p.T319P|SLC14A1_uc002lbg.3_RNA|SLC14A1_uc010xco.1_Missense_Mutation_p.T214P|SLC14A1_uc002lbh.3_Missense_Mutation_p.T211P|SLC14A1_uc002lbi.3_Missense_Mutation_p.T187P|SLC14A1_uc002lbj.3_Missense_Mutation_p.T375P|SLC14A1_uc002lbk.3_Missense_Mutation_p.T319P	NM_001146036	NP_001139508	Q13336	UT1_HUMAN	solute carrier family 14 (urea transporter),	319	Helical; (Potential).		T -> M (in Jk(null)).			integral to plasma membrane	urea transmembrane transporter activity			central_nervous_system(1)|pancreas(1)	2						AGCCCTGTTCACGGCCTATCT	0.418													31	69					0	0	0.003271	0	0
SMAD2	4087	broad.mit.edu	37	18	45395780	45395780	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:45395780G>A	uc002lcy.2	-	4	602	c.354C>T	c.(352-354)TCC>TCT	p.S118S	SMAD2_uc002lcz.2_Silent_p.S118S|SMAD2_uc010xdc.1_Silent_p.S88S|SMAD2_uc010xdd.1_Silent_p.S88S	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	118	MH1.				anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						CTTTTCGATGGGATACCTGGA	0.418													16	5					0	0	0.004990	0	0
DCC	1630	broad.mit.edu	37	18	50683829	50683829	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:50683829G>A	uc002lfe.1	+	8	1952	c.1365G>A	c.(1363-1365)GCG>GCA	p.A455A	DCC_uc010xdr.1_Silent_p.A303A|DCC_uc010dpf.1_Silent_p.A110A	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	455	Extracellular (Potential).|Fibronectin type-III 1.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CTGCAGAAGCGAAAGGGAACA	0.502													35	25					0	0	0.003271	0	0
C18orf54	162681	broad.mit.edu	37	18	51888050	51888050	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:51888050C>T	uc002lfn.3	+	3	437	c.321C>T	c.(319-321)TTC>TTT	p.F107F	C18orf54_uc002lfo.3_Silent_p.F107F	NM_173529	NP_775800	Q8IYD9	CR054_HUMAN	hypothetical protein LOC162681 precursor	107						extracellular region				ovary(1)|skin(1)	2				Colorectal(16;0.0206)|READ - Rectum adenocarcinoma(59;0.186)		ACTCAAACTTCATATCCTGTA	0.323													8	17					0	0	0.003080	0	0
FECH	2235	broad.mit.edu	37	18	55247340	55247340	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:55247340G>A	uc002lgq.3	-	2	276	c.159C>T	c.(157-159)GCC>GCT	p.A53A	FECH_uc002lgp.3_Silent_p.A53A|FECH_uc002lgr.3_5'UTR	NM_000140	NP_000131	P22830	HEMH_HUMAN	ferrochelatase isoform b precursor	53					generation of precursor metabolites and energy|heme biosynthetic process|protoporphyrinogen IX metabolic process|response to light stimulus	mitochondrial inner membrane|mitochondrial matrix	2 iron, 2 sulfur cluster binding|ferrochelatase activity|ferrous iron binding|protein binding			central_nervous_system(1)	1		Colorectal(73;0.227)				TTGCACCCTGGGCATGCTGGG	0.512													21	16					0	0	0.008871	0	0
ZNF532	55205	broad.mit.edu	37	18	56587508	56587508	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:56587508C>T	uc002lho.2	+	4	2536	c.1989C>T	c.(1987-1989)TCC>TCT	p.S663S	ZNF532_uc002lhp.2_Silent_p.S661S|ZNF532_uc010xeg.1_Silent_p.S661S|ZNF532_uc002lhr.2_Silent_p.S661S|ZNF532_uc002lhs.2_Silent_p.S661S	NM_018181	NP_060651	Q9HCE3	ZN532_HUMAN	zinc finger protein 532	663					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			breast(1)|skin(1)	2						GCCTCCTTTCCCATGCCCGTG	0.483													13	28					0	0	0.002450	0	0
RNF152	220441	broad.mit.edu	37	18	59483372	59483373	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:59483372_59483373CC>TT	uc002lih.1	-	2	736_737	c.324_325GG>AA	c.(322-327)AAGGAG>AAAAAG	p.E109K		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	109					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				AGCGCACGCTCCTTGGAGATGG	0.624													9	13					0	0	0.004672	0	0
KIAA1468	57614	broad.mit.edu	37	18	59954692	59954692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:59954692C>T	uc002lil.2	+	26	3577	c.3362C>T	c.(3361-3363)TCC>TTC	p.S1121F	KIAA1468_uc010xel.1_Missense_Mutation_p.S1121F|KIAA1468_uc002lim.2_Missense_Mutation_p.S799F	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	1121							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				AGTGCACTTTCCTGTTGTTGT	0.358													22	39					0	0	0.004656	0	0
VPS4B	9525	broad.mit.edu	37	18	61064419	61064420	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:61064419_61064420GG>AA	uc002lix.2	-	9	1199_1200	c.939_940CC>TT	c.(937-942)CACCTA>CATTTA	p.313_314HL>HL	VPS4B_uc010dpx.2_Silent_p.313_314HL>HL|VPS4B_uc010dpy.2_Silent_p.195_196HL>HL|VPS4B_uc010dpz.1_Silent_p.195_196HL>HL	NM_004869	NP_004860	O75351	VPS4B_HUMAN	vacuolar protein sorting factor 4B	313_314					cell cycle|cell division|cellular membrane organization|endosome to lysosome transport via multivesicular body sorting pathway|intracellular cholesterol transport|protein transport|response to lipid	cytosol|early endosome|late endosome membrane|lysosome|nucleus|vacuolar membrane	ATP binding|ATPase activity, coupled|protein C-terminus binding			ovary(1)	1						GTGGTCCCTAGGTGCAGTTTAA	0.411													16	28					0	0	0.004672	0	0
SERPINB7	8710	broad.mit.edu	37	18	61471587	61471587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:61471587G>A	uc002ljl.2	+	8	957	c.861G>A	c.(859-861)ATG>ATA	p.M287I	SERPINB7_uc002ljm.2_Missense_Mutation_p.M287I|SERPINB7_uc010xet.1_Missense_Mutation_p.M270I|SERPINB7_uc010dqg.2_Missense_Mutation_p.M287I	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	287					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				ATTATGAAATGAAACAATATT	0.398													7	22					0	0	0.003080	0	0
SERPINB8	5271	broad.mit.edu	37	18	61650953	61650953	+	Missense_Mutation	SNP	G	A	A	rs146695124	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:61650953G>A	uc002ljv.2	+	5	734	c.565G>A	c.(565-567)GAG>AAG	p.E189K	SERPINB8_uc002ljt.2_Missense_Mutation_p.E189K|SERPINB8_uc002lju.2_Missense_Mutation_p.E189K|SERPINB8_uc010xex.1_Missense_Mutation_p.E7K	NM_198833	NP_942130	P50452	SPB8_HUMAN	serine (or cysteine) proteinase inhibitor, clade	189					regulation of proteolysis	cytosol	protein binding|serine-type endopeptidase inhibitor activity			skin(1)	1		Esophageal squamous(42;0.129)				TAAAACCAACGAGGTAGGGAA	0.343													8	41					0	0	0.004482	0	0
CDH19	28513	broad.mit.edu	37	18	64235818	64235818	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:64235818C>T	uc002lkc.1	-	3	463	c.325G>A	c.(325-327)GAG>AAG	p.E109K	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Missense_Mutation_p.E109K|CDH19_uc002lkd.2_Missense_Mutation_p.E109K	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	109	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				AGGGATCGCTCCTCTCTATCA	0.433													22	47					0	0	0.002780	0	0
CDH19	28513	broad.mit.edu	37	18	64235912	64235912	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:64235912G>A	uc002lkc.1	-	3	369	c.231C>T	c.(229-231)TTC>TTT	p.F77F	CDH19_uc010dql.1_RNA|CDH19_uc010xey.1_Silent_p.F77F|CDH19_uc002lkd.2_Silent_p.F77F	NM_021153	NP_066976	Q9H159	CAD19_HUMAN	cadherin 19, type 2 preproprotein	77	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|skin(1)	2		Esophageal squamous(42;0.0132)				GCTTGTACTGGAAAGAATTGT	0.373													16	30					0	0	0.003163	0	0
FBXO15	201456	broad.mit.edu	37	18	71740886	71740886	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:71740886C>T	uc002lle.2	-	10	1451	c.1115G>A	c.(1114-1116)AGA>AAA	p.R372K	FBXO15_uc002lld.2_RNA|FBXO15_uc002llf.2_Missense_Mutation_p.R448K	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	372										ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		GGCAGGCGATCTCAGGCACAC	0.502													33	75					0	0	0.002836	0	0
ZNF407	55628	broad.mit.edu	37	18	72347586	72347586	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:72347586C>T	uc002llw.2	+	1	4668	c.4611C>T	c.(4609-4611)AAC>AAT	p.N1537N	ZNF407_uc010xfc.1_Silent_p.N1537N|ZNF407_uc010dqu.1_Silent_p.N1537N|ZNF407_uc002llu.2_Silent_p.N1536N	NM_017757	NP_060227	Q9C0G0	ZN407_HUMAN	zinc finger protein 407 isoform 1	1537	C2H2-type 14; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2		Esophageal squamous(42;0.131)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.184)		ACCAGGGAAACGTCTGCAAGT	0.488													18	15					0	0	0.006122	0	0
ZNF516	9658	broad.mit.edu	37	18	74092172	74092172	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:74092172T>A	uc010dqx.1	-	3	2133	c.1898A>T	c.(1897-1899)AAC>ATC	p.N633I	ZNF516_uc002lme.2_RNA|ZNF516_uc002lmd.2_RNA	NM_014643	NP_055458	Q92618	ZN516_HUMAN	zinc finger protein 516	633					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Prostate(75;0.0869)|Esophageal squamous(42;0.129)		OV - Ovarian serous cystadenocarcinoma(15;7.64e-06)|BRCA - Breast invasive adenocarcinoma(31;0.238)		TTCCGAGGCGTTATCTCCCAT	0.562													16	32					0	0	0.006122	0	0
NFATC1	4772	broad.mit.edu	37	18	77170930	77170930	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:77170930G>A	uc010xfg.1	+	2	1108	c.655G>A	c.(655-657)GAG>AAG	p.E219K	NFATC1_uc002lnc.1_Missense_Mutation_p.E219K|NFATC1_uc010xff.1_Missense_Mutation_p.E219K|NFATC1_uc002lnd.2_Missense_Mutation_p.E219K|NFATC1_uc002lne.2_Intron|NFATC1_uc010xfh.1_Missense_Mutation_p.E219K|NFATC1_uc010xfi.1_Missense_Mutation_p.E206K|NFATC1_uc010xfj.1_Intron|NFATC1_uc002lnf.2_Missense_Mutation_p.E206K|NFATC1_uc002lng.2_Missense_Mutation_p.E206K|NFATC1_uc010xfk.1_Missense_Mutation_p.E206K	NM_006162	NP_006153	O95644	NFAC1_HUMAN	nuclear factor of activated T-cells, cytosolic	219	1.|3 X SP repeats.				intracellular signal transduction|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleus	FK506 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			large_intestine(1)|ovary(1)	2		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;3.73e-07)|BRCA - Breast invasive adenocarcinoma(31;0.0257)		GGACCCCGAGGAGGGCTTTCC	0.701													18	14					0	0	0.007413	0	0
ADNP2	22850	broad.mit.edu	37	18	77893615	77893615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr18:77893615C>T	uc002lnw.2	+	4	774	c.319C>T	c.(319-321)CCT>TCT	p.P107S		NM_014913	NP_055728	Q6IQ32	ADNP2_HUMAN	ADNP homeobox 2	107					cellular response to oxidative stress|cellular response to retinoic acid|negative regulation of cell death|neuron differentiation|positive regulation of cell growth	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|breast(3)|central_nervous_system(1)	8		all_cancers(4;1.06e-15)|all_epithelial(4;2.36e-10)|all_lung(4;0.000302)|Lung NSC(4;0.000518)|Esophageal squamous(42;0.0212)|Ovarian(4;0.0256)|all_hematologic(56;0.15)|Melanoma(33;0.2)		Epithelial(2;1.1e-11)|OV - Ovarian serous cystadenocarcinoma(15;7.54e-09)|BRCA - Breast invasive adenocarcinoma(31;0.00247)|STAD - Stomach adenocarcinoma(84;0.164)		GCTGGTGATCCCTTGCCCAAA	0.438													18	50					0	0	0.002299	0	0
PPAP2C	8612	broad.mit.edu	37	19	291325	291326	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:291325_291326CC>TT	uc002loi.2	-	1	110_111	c.11_12GG>AA	c.(10-12)AGG>AAA	p.R4K	PPAP2C_uc002loh.2_5'Flank|PPAP2C_uc002loj.2_Splice_Site	NM_003712	NP_003703	O43688	LPP2_HUMAN	phosphatidic acid phosphatase type 2C isoform 1	4					sphingolipid metabolic process	integral to membrane|plasma membrane	phosphatidate phosphatase activity|phosphoprotein phosphatase activity|sphingosine-1-phosphate phosphatase activity			central_nervous_system(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CGAAGACCCACCTCCGCTGCAT	0.762													13	24					0	0	0.004672	0	0
MIER2	54531	broad.mit.edu	37	19	327918	327918	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:327918C>T	uc002lok.1	-	4	324	c.315G>A	c.(313-315)CGG>CGA	p.R105R		NM_017550	NP_060020	Q8N344	MIER2_HUMAN	mesoderm induction early response 1, family	105					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTCACTCTCCCGGTCTGAAA	0.592													10	15					0	0	0.008291	0	0
THEG	51298	broad.mit.edu	37	19	375747	375747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:375747G>A	uc002lol.2	-	1	263	c.224C>T	c.(223-225)CCG>CTG	p.P75L	THEG_uc002lom.2_Missense_Mutation_p.P75L	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	75					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGGGTCTCCGGGAACTCCTC	0.602													38	41					0	0	0.006999	0	0
MADCAM1	8174	broad.mit.edu	37	19	498503	498503	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:498503G>A	uc002los.2	+	3	355	c.345G>A	c.(343-345)CCG>CCA	p.P115P	MADCAM1_uc002lot.2_Silent_p.P115P|MADCAM1_uc010drq.2_Silent_p.P20P	NM_130760	NP_570116	Q13477	MADCA_HUMAN	mucosal vascular addressin cell adhesion	115	Extracellular (Potential).|Ig-like 2.				cell adhesion|immune response|regulation of immune response|signal transduction	integral to membrane|membrane fraction|plasma membrane					0		all_cancers(10;4.25e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCCTTCCCGGACCAGCTGA	0.706													10	13					0	0	0.001368	0	0
MADCAM1	8174	broad.mit.edu	37	19	504926	504926	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:504926G>A	uc002los.2	+	5	1120	c.1110G>A	c.(1108-1110)GGG>GGA	p.G370G	MADCAM1_uc002lot.2_Silent_p.G283G|MADCAM1_uc010drq.2_Silent_p.G188G|C19orf20_uc002lou.2_5'Flank	NM_130760	NP_570116	Q13477	MADCA_HUMAN	mucosal vascular addressin cell adhesion	370	Cytoplasmic (Potential).				cell adhesion|immune response|regulation of immune response|signal transduction	integral to membrane|membrane fraction|plasma membrane					0		all_cancers(10;4.25e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CCTGGGCTGGGTTAAGGGGGA	0.527													8	10					0	0	0.003080	0	0
GZMM	3004	broad.mit.edu	37	19	547286	547286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:547286C>T	uc002low.1	+	2	107	c.62C>T	c.(61-63)TCC>TTC	p.S21F		NM_005317	NP_005308	P51124	GRAM_HUMAN	granzyme M precursor	21					apoptosis|cytolysis|innate immune response|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_cancers(10;1.94e-35)|all_epithelial(18;5.94e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;3.55e-06)|all_lung(49;5.41e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCAGGCAGCTCCTTTGGGACC	0.662													21	16					0	0	0.002780	0	0
AZU1	566	broad.mit.edu	37	19	830846	830846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:830846C>T	uc002lpz.1	+	4	515	c.499C>T	c.(499-501)CCC>TCC	p.P167S		NM_001700	NP_001691	P20160	CAP7_HUMAN	azurocidin 1 preproprotein	167	Peptidase S1.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis|cellular extravasation|defense response to Gram-negative bacterium|glial cell migration|induction of positive chemotaxis|inflammatory response|macrophage chemotaxis|microglial cell activation|monocyte activation|positive regulation of cell adhesion|positive regulation of fractalkine biosynthetic process|positive regulation of interleukin-1 beta biosynthetic process|positive regulation of MHC class II biosynthetic process|positive regulation of phagocytosis|positive regulation of tumor necrosis factor biosynthetic process|proteolysis|regulation of vascular permeability	azurophil granule|extracellular region	heparin binding|serine-type endopeptidase activity|toxin binding			pancreas(1)	1		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;6.59e-06)|all_lung(49;9.97e-06)|Breast(49;0.000172)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTCCCGTTTTCCCAGGTTTGT	0.662													19	10					0	0	0.001523	0	0
MBD3	53615	broad.mit.edu	37	19	1578341	1578341	+	Nonstop_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:1578341A>T	uc002ltl.1	-	6	896	c.874T>A	c.(874-876)TAG>AAG	p.*292K	uc002lti.1_5'Flank|MBD3_uc002ltj.2_Nonstop_Mutation_p.*292K|MBD3_uc002ltk.2_Nonstop_Mutation_p.*260K	NM_003926	NP_003917	O95983	MBD3_HUMAN	methyl-CpG binding domain protein 3	292					transcription, DNA-dependent	NuRD complex	DNA binding|protein binding			ovary(1)|pancreas(1)|skin(1)	3		Acute lymphoblastic leukemia(61;3.02e-13)|all_hematologic(61;4.32e-09)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|Lung(535;0.179)|STAD - Stomach adenocarcinoma(1328;0.18)		CACCTGCCCTAGACGTGCTCC	0.557													9	11					0	0	0.008291	0	0
AP3D1	8943	broad.mit.edu	37	19	2114268	2114268	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:2114268C>T	uc002luz.2	-	22	2680	c.2457G>A	c.(2455-2457)CAG>CAA	p.Q819Q	AP3D1_uc010dsv.2_5'Flank|AP3D1_uc002luy.2_Silent_p.Q728Q|AP3D1_uc002lva.2_Silent_p.Q819Q	NM_003938	NP_003929	O14617	AP3D1_HUMAN	adaptor-related protein complex 3, delta 1	819					eye pigment biosynthetic process|intracellular protein transport|regulation of sequestering of zinc ion|vesicle-mediated transport	endosome membrane|Golgi membrane|membrane coat	binding|protein transporter activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTCTGTGTTTCTGAATAGGCA	0.507													6	14					0	0	0.001984	0	0
ZNF554	115196	broad.mit.edu	37	19	2834600	2834600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:2834600G>A	uc002lwm.2	+	5	1565	c.1367G>A	c.(1366-1368)CGA>CAA	p.R456Q	ZNF554_uc002lwl.2_Missense_Mutation_p.R405Q	NM_001102651	NP_001096121	Q86TJ5	ZN554_HUMAN	zinc finger protein 554	456	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CAGCACGAGCGAACTCACACG	0.547													11	24					0	0	0.001855	0	0
ZNF556	80032	broad.mit.edu	37	19	2873517	2873517	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:2873517G>A	uc002lwp.1	+	2	114	c.27G>A	c.(25-27)GTG>GTA	p.V9V	ZNF556_uc002lwq.2_Silent_p.V9V	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	9	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TTGAAGACGTGGTTGTGGATT	0.488													15	55					0	0	0.002450	0	0
TLE2	7089	broad.mit.edu	37	19	3005778	3005778	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:3005778G>A	uc002lww.2	-	16	1952	c.1689C>T	c.(1687-1689)TTC>TTT	p.F563F	TLE2_uc010xhb.1_Silent_p.F230F|TLE2_uc010dth.2_Silent_p.F564F|TLE2_uc010xhc.1_Silent_p.F441F|TLE2_uc010dti.2_Silent_p.F577F	NM_003260	NP_003251	Q04725	TLE2_HUMAN	transducin-like enhancer protein 2 isoform 1	563	WD 3.				negative regulation of canonical Wnt receptor signaling pathway|negative regulation of transcription, DNA-dependent|organ morphogenesis|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	protein binding|transcription corepressor activity				0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TGCAGCAGGAGAAGCAAACCT	0.667													16	26					0	0	0.004990	0	0
CELF5	60680	broad.mit.edu	37	19	3290302	3290302	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:3290302C>T	uc002lxm.2	+	11	1297	c.1260C>T	c.(1258-1260)TTC>TTT	p.F420F	CELF5_uc002lxl.1_Missense_Mutation_p.P407S|CELF5_uc010dtj.1_Missense_Mutation_p.P382S|CELF5_uc010xhg.1_Missense_Mutation_p.P293S|CELF5_uc002lxn.2_RNA	NM_021938	NP_068757	Q8N6W0	CELF5_HUMAN	bruno-like 5, RNA binding protein	420	RRM 3.				mRNA processing	cytoplasm|nucleus	nucleotide binding|RNA binding			ovary(2)	2						CGCAGATGTTCCTACCCTTCG	0.557													26	37					0	0	0.005443	0	0
PTPRS	5802	broad.mit.edu	37	19	5219985	5219985	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:5219985G>A	uc002mbv.2	-	22	3964	c.3730C>T	c.(3730-3732)CTC>TTC	p.L1244F	PTPRS_uc002mbu.1_Missense_Mutation_p.L813F|PTPRS_uc010xin.1_Missense_Mutation_p.L813F|PTPRS_uc002mbw.2_Missense_Mutation_p.L1222F|PTPRS_uc002mbx.2_Missense_Mutation_p.L817F|PTPRS_uc002mby.2_Missense_Mutation_p.L813F	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	1244	Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		AGCACGAAGAGGACATAGCGG	0.612													33	53					0	0	0.006230	0	0
PTPRS	5802	broad.mit.edu	37	19	5229345	5229345	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:5229345C>T	uc002mbv.2	-	16	2592	c.2358G>A	c.(2356-2358)ACG>ACA	p.T786T	PTPRS_uc002mbu.1_Intron|PTPRS_uc010xin.1_Intron|PTPRS_uc002mbw.2_Intron|PTPRS_uc002mbx.2_Intron|PTPRS_uc002mby.2_Intron	NM_002850	NP_002841	Q13332	PTPRS_HUMAN	protein tyrosine phosphatase, receptor type,	786	Fibronectin type-III 5.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			large_intestine(2)|ovary(1)|central_nervous_system(1)	4				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0321)|Lung(535;0.182)		CCGTGTCATCCGTCTCCCACT	0.398													4	8					0	0	0.000248	0	0
FUT3	2525	broad.mit.edu	37	19	5844392	5844392	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:5844392G>A	uc002mdk.2	-	2	556	c.459C>T	c.(457-459)TTC>TTT	p.F153F	FUT3_uc002mdm.2_Silent_p.F153F|FUT3_uc002mdj.2_Silent_p.F153F|FUT3_uc002mdl.2_Silent_p.F153F	NM_001097641	NP_001091110	P21217	FUT3_HUMAN	fucosyltransferase 3	153	Lumenal (Potential).				protein glycosylation	Golgi cisterna membrane|integral to membrane|membrane fraction	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity				0						TGGTGAGATTGAAGTATCTGT	0.647													22	24					0	0	0.002780	0	0
C3	718	broad.mit.edu	37	19	6696664	6696664	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:6696664C>T	uc002mfm.2	-	22	2865	c.2803G>A	c.(2803-2805)GGA>AGA	p.G935R		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	935					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		ATTCTGATTCCTTCCGGCTAC	0.582													30	74					0	0	0.002836	0	0
C19orf45	374877	broad.mit.edu	37	19	7573212	7573212	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:7573212G>A	uc002mgm.2	+	9	1555	c.1414G>A	c.(1414-1416)GAG>AAG	p.E472K		NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	472											0						AAATCCTCAGGAGGGCTTCGT	0.612													14	16					0	0	0.003163	0	0
C19orf45	374877	broad.mit.edu	37	19	7573214	7573215	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:7573214_7573215GG>AA	uc002mgm.2	+	9	1557_1558	c.1416_1417GG>AA	c.(1414-1419)GAGGGC>GAAAGC	p.G473S		NM_198534	NP_940936	Q8NA69	CS045_HUMAN	hypothetical protein LOC374877	473											0						ATCCTCAGGAGGGCTTCGTGCC	0.599													15	16					0	0	0.004672	0	0
XAB2	56949	broad.mit.edu	37	19	7686102	7686102	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:7686102G>A	uc002mgx.2	-	13	1725	c.1699C>T	c.(1699-1701)CGC>TGC	p.R567C		NM_020196	NP_064581	Q9HCS7	SYF1_HUMAN	XPA binding protein 2	567					transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	catalytic step 2 spliceosome|nucleoplasm	protein binding			central_nervous_system(2)|breast(1)|skin(1)	4						CCCCCATAGCGGGCAATGAAT	0.612								Direct_reversal_of_damage|NER					15	18					0	0	0.003163	0	0
LRRC8E	80131	broad.mit.edu	37	19	7963729	7963729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:7963729G>A	uc002mir.2	+	3	423	c.322G>A	c.(322-324)GAG>AAG	p.E108K		NM_025061	NP_079337	Q6NSJ5	LRC8E_HUMAN	leucine rich repeat containing 8 family, member	108						integral to membrane				lung(1)|pancreas(1)	2						GCTGTGTTATGAGACGGCCCT	0.507													45	32					0	0	0.003610	0	0
MARCH2	51257	broad.mit.edu	37	19	8495677	8495677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:8495677C>T	uc002mjv.2	+	5	949	c.508C>T	c.(508-510)CAC>TAC	p.H170Y	MARCH2_uc002mjw.2_Missense_Mutation_p.H170Y|MARCH2_uc002mjx.2_Intron	NM_016496	NP_057580	Q9P0N8	MARH2_HUMAN	membrane-associated ring finger (C3HC4) 2	170					endocytosis	cytoplasmic vesicle|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						CCTCCGGCTCCACAGCCAGCT	0.632													15	10					0	0	0.002450	0	0
MUC16	94025	broad.mit.edu	37	19	8976277	8976277	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:8976277T>C	uc002mkp.2	-	75	42755	c.42551A>G	c.(42550-42552)GAT>GGT	p.D14184G	MUC16_uc010dwi.2_RNA|MUC16_uc010dwj.2_Missense_Mutation_p.D984G|MUC16_uc010xki.1_Intron	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAAGAGGCTATCCCTGTCCAG	0.453													8	14					0	0	0.006214	0	0
MUC16	94025	broad.mit.edu	37	19	9028394	9028394	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:9028394G>A	uc002mkp.2	-	11	36602	c.36398C>T	c.(36397-36399)CCA>CTA	p.P12133L		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12135	SEA 1.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATCCTTCTCTGGCCTGGGTAA	0.527													19	39					0	0	0.004656	0	0
MUC16	94025	broad.mit.edu	37	19	9056722	9056722	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:9056722C>T	uc002mkp.2	-	3	30928	c.30724G>A	c.(30724-30726)GGG>AGG	p.G10242R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	10244	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGGTTATCCCAGTGGACTCC	0.453													25	32					0	0	0.003954	0	0
MUC16	94025	broad.mit.edu	37	19	9069094	9069094	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:9069094G>A	uc002mkp.2	-	3	18556	c.18352C>T	c.(18352-18354)CCT>TCT	p.P6118S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6120	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						ATGAATGTAGGATCATAGTAG	0.483													6	13					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9070548	9070548	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:9070548G>A	uc002mkp.2	-	3	17102	c.16898C>T	c.(16897-16899)TCC>TTC	p.S5633F		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5635	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGACATCAGGGAAAACCCAGA	0.527													4	19					0	0	0.000248	0	0
MUC16	94025	broad.mit.edu	37	19	9083510	9083510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:9083510C>T	uc002mkp.2	-	1	8509	c.8305G>A	c.(8305-8307)GAG>AAG	p.E2769K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2769	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GCCGTTGTCTCTGAGTTTTCA	0.498													21	16					0	0	0.008871	0	0
MUC16	94025	broad.mit.edu	37	19	9085683	9085683	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:9085683C>T	uc002mkp.2	-	1	6336	c.6132G>A	c.(6130-6132)AGG>AGA	p.R2044R		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	2044	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTGCATTCCTCCTACTGATTG	0.488													52	61					0	0	0.003610	0	0
COL5A3	50509	broad.mit.edu	37	19	10081684	10081685	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:10081684_10081685CC>TT	uc002mmq.1	-	53	3934_3935	c.3848_3849GG>AA	c.(3847-3849)GGG>GAA	p.G1283E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	1283	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			CTCCCTTCTCCCCTGGGGAACC	0.584													10	34					0	0	0.004672	0	0
COL5A3	50509	broad.mit.edu	37	19	10106767	10106767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:10106767C>T	uc002mmq.1	-	15	1594	c.1508G>A	c.(1507-1509)GGA>GAA	p.G503E		NM_015719	NP_056534	P25940	CO5A3_HUMAN	collagen, type V, alpha 3 preproprotein	503	Triple-helical region.				collagen fibril organization|skin development	collagen type V	collagen binding|extracellular matrix structural constituent			ovary(7)|lung(1)|central_nervous_system(1)|skin(1)	10			Epithelial(33;7.11e-05)			TCCCTCCTCTCCTTTCAGACC	0.577													20	85					0	0	0.001523	0	0
ICAM5	7087	broad.mit.edu	37	19	10404517	10404517	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:10404517G>A	uc002mnu.3	+	7	1674	c.1609G>A	c.(1609-1611)GAG>AAG	p.E537K	ICAM5_uc002mnv.3_Missense_Mutation_p.E412K	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	537	Extracellular (Potential).|Ig-like C2-type 6.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			GGCCGTCATCGAGGGGCTGTT	0.662													16	28					0	0	0.004990	0	0
RAVER1	125950	broad.mit.edu	37	19	10433941	10433941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:10433941G>A	uc002moa.2	-	5	1089	c.1009C>T	c.(1009-1011)CGG>TGG	p.R337W		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	320	Interaction with PTBP1 (By similarity).					cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			CCCTTCCCCCGATTGAGGGCC	0.672													10	13					0	0	0.008291	0	0
SLC44A2	57153	broad.mit.edu	37	19	10742376	10742376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:10742376G>A	uc002mpf.2	+	8	716	c.577G>A	c.(577-579)GAT>AAT	p.D193N	SLC44A2_uc002mpe.3_Missense_Mutation_p.D191N	NM_020428	NP_065161	Q8IWA5	CTL2_HUMAN	solute carrier family 44, member 2 isoform 1	193	Extracellular (Potential).				positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to membrane|plasma membrane	choline transmembrane transporter activity|signal transducer activity			ovary(1)	1			Epithelial(33;8.7e-06)|all cancers(31;2.77e-05)		Choline(DB00122)	GACCTATGAGGATGGGCATGG	0.607													11	15					0	0	0.001855	0	0
KANK2	25959	broad.mit.edu	37	19	11285256	11285256	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:11285256C>G	uc010dxv.2	-	11	2519	c.1961G>C	c.(1960-1962)CGG>CCG	p.R654P	KANK2_uc002mqm.2_Missense_Mutation_p.R662P|KANK2_uc002mqo.3_Missense_Mutation_p.R654P|KANK2_uc002mqp.1_Missense_Mutation_p.R463P	NM_015493	NP_056308	Q63ZY3	KANK2_HUMAN	ankyrin repeat domain 25 isoform 1	654											0						GTCCAGCAGCCGCGCAGACAT	0.667													3	3					0	0	0.004672	0	0
ECSIT	51295	broad.mit.edu	37	19	11624692	11624692	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:11624692G>A	uc002msb.2	-	3	575	c.441C>T	c.(439-441)ATC>ATT	p.I147I	ECSIT_uc002msa.1_5'Flank|ECSIT_uc010dyc.1_Silent_p.I147I|ECSIT_uc010dyd.2_Silent_p.I147I|ECSIT_uc010xma.1_Intron	NM_016581	NP_057665	Q9BQ95	ECSIT_HUMAN	evolutionarily conserved signaling intermediate	147					innate immune response|regulation of oxidoreductase activity	mitochondrion	oxidoreductase activity, acting on NADH or NADPH|protein binding			ovary(1)	1						AGATGCGCTGGATGATGTTGC	0.612													4	22					0	0	0.000248	0	0
ZNF823	55552	broad.mit.edu	37	19	11832979	11832979	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:11832979G>A	uc002msm.2	-	4	1496	c.1370C>T	c.(1369-1371)TCC>TTC	p.S457F	ZNF823_uc010xmd.1_Missense_Mutation_p.S275F|ZNF823_uc010dyi.1_Missense_Mutation_p.S413F	NM_001080493	NP_001073962	P16415	ZN823_HUMAN	ZFP-36 for a zinc finger protein	457	C2H2-type 11; atypical.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2						ATTTTGAAAGGAAGAGAGATC	0.423										HNSCC(68;0.2)			44	54					0	0	0.008740	0	0
ZNF709	163051	broad.mit.edu	37	19	12575099	12575099	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:12575099G>A	uc002mtv.3	-	4	1798	c.1637C>T	c.(1636-1638)TCC>TTC	p.S546F	ZNF709_uc002mtw.3_Missense_Mutation_p.S514F|ZNF709_uc002mtx.3_Missense_Mutation_p.S546F	NM_152601	NP_689814	Q8N972	ZN709_HUMAN	zinc finger protein 709 isoform a	546	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TATTCGAATGGAACTGGAACA	0.418													55	57					0	0	0.003610	0	0
ASNA1	439	broad.mit.edu	37	19	12858873	12858873	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:12858873C>T	uc002muv.2	+	7	1016	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	ASNA1_uc002muw.2_Silent_p.F333F	NM_004317	NP_004308	O43681	ASNA_HUMAN	arsA arsenite transporter, ATP-binding, homolog	334					response to arsenic-containing substance	endoplasmic reticulum|nucleolus|soluble fraction	arsenite-transporting ATPase activity|ATP binding|metal ion binding			ovary(2)	2					Adenosine triphosphate(DB00171)	TCAACACCTTCTCGGCCCTCC	0.627													23	21					0	0	0.003330	0	0
RTBDN	83546	broad.mit.edu	37	19	12945611	12945611	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:12945611G>A	uc002mvj.2	-	2	384	c.66C>T	c.(64-66)CTC>CTT	p.L22L	RTBDN_uc002mvh.1_Silent_p.L22L|MAST1_uc002mvk.2_Intron	NM_031429	NP_113617	Q9BSG5	RTBDN_HUMAN	retbindin isoform 2	Error:Variant_position_missing_in_Q9BSG5_after_alignment						extracellular region					0						CCAAGGTGGGGAGGGATTCTG	0.587													10	33					0	0	0.008291	0	0
FARSA	2193	broad.mit.edu	37	19	13041248	13041248	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:13041248G>A	uc002mvs.2	-	3	427	c.379C>T	c.(379-381)CGA>TGA	p.R127*	FARSA_uc002mvt.2_RNA|FARSA_uc010xmv.1_Nonsense_Mutation_p.R127*|FARSA_uc010dyy.1_Intron	NM_004461	NP_004452	Q9Y285	SYFA_HUMAN	phenylalanyl-tRNA synthetase, alpha subunit	127					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|phenylalanine-tRNA ligase activity|protein binding|tRNA binding			ovary(1)	1					L-Phenylalanine(DB00120)	CGCACCACTCGGAACACCCGG	0.642													18	48					0	0	0.001882	0	0
C19orf57	79173	broad.mit.edu	37	19	14006359	14006359	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:14006359C>A	uc002mxl.1	-	3	91	c.32G>T	c.(31-33)GGA>GTA	p.G11V	C19orf57_uc002mxk.1_5'Flank|C19orf57_uc002mxm.1_Missense_Mutation_p.G11V	NM_024323	NP_077299	Q0VDD7	CS057_HUMAN	hypothetical protein LOC79173	11					multicellular organismal development		protein binding			ovary(2)|upper_aerodigestive_tract(1)	3			OV - Ovarian serous cystadenocarcinoma(19;2e-21)			GAGTCCCTCTCCTGTTTTAGA	0.443													18	57					1.50039e-11	2.1153e-11	0.001882	1	0
ASF1B	55723	broad.mit.edu	37	19	14232369	14232369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:14232369G>A	uc002mye.2	-	3	549	c.377C>T	c.(376-378)CCG>CTG	p.P126L		NM_018154	NP_060624	Q9NVP2	ASF1B_HUMAN	anti-silencing function 1B	126	Interaction with CHAF1B.|Interaction with histone H3 (By similarity).				cell differentiation|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|spermatogenesis|transcription, DNA-dependent	nucleus					0						CTTCATGGGCGGGTTCTCACG	0.542													31	43					0	0	0.003755	0	0
EMR3	84658	broad.mit.edu	37	19	14744099	14744099	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:14744099C>T	uc002mzi.3	-	12	1648	c.1500G>A	c.(1498-1500)CTG>CTA	p.L500L	EMR3_uc010dzp.2_Silent_p.L448L|EMR3_uc010xnv.1_Silent_p.L374L	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	500	Extracellular (Potential).				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(5)|skin(1)	6						ATCCCTGGTCCAGGTGGAGCC	0.463													5	8					0	0	0.000602	0	0
CYP4F11	57834	broad.mit.edu	37	19	16025191	16025191	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:16025191C>T	uc002nbu.2	-	12	1357	c.1321G>A	c.(1321-1323)GAC>AAC	p.D441N	CYP4F11_uc010eab.1_Missense_Mutation_p.R419Q|CYP4F11_uc002nbt.2_Missense_Mutation_p.D441N	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	441					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						CGGAAGGGGTCGTAGACCTGC	0.587													17	73					0	0	0.004990	0	0
CYP4F11	57834	broad.mit.edu	37	19	16038253	16038253	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:16038253C>T	uc002nbu.2	-	4	420	c.384G>A	c.(382-384)CTG>CTA	p.L128L	CYP4F11_uc010eab.1_Silent_p.L128L|CYP4F11_uc002nbt.2_Silent_p.L128L	NM_001128932	NP_001122404	Q9HBI6	CP4FB_HUMAN	cytochrome P450 family 4 subfamily F polypeptide	128					inflammatory response|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)	1						GCCAGGGCTTCAGGAAGCCAT	0.532													82	84					0	0	0.003610	0	0
OR10H4	126541	broad.mit.edu	37	19	16060239	16060239	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:16060239A>C	uc010xov.1	+	1	422	c.422A>C	c.(421-423)GAC>GCC	p.D141A		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	141	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						AGCCCCCGTGACTGTGCCCAT	0.537													26	45					0	0	0.006320	0	0
NWD1	284434	broad.mit.edu	37	19	16918540	16918540	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:16918540C>T	uc002neu.3	+	18	4302	c.3880C>T	c.(3880-3882)CCC>TCC	p.P1294S	NWD1_uc002net.3_Missense_Mutation_p.P1159S|NWD1_uc002nev.3_Missense_Mutation_p.P1088S			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	1294							ATP binding			skin(3)|ovary(2)|pancreas(2)	7						GATATGCATTCCCCCTCCCGA	0.592													8	42					0	0	0.003080	0	0
CPAMD8	27151	broad.mit.edu	37	19	17056472	17056472	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:17056472C>T	uc002nfb.2	-	22	2853	c.2821G>A	c.(2821-2823)GGA>AGA	p.G941R		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	894						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						TTTGTGTCTCCGTAAGCAAGG	0.567													14	49					0	0	0.002450	0	0
ABHD8	79575	broad.mit.edu	37	19	17412068	17412068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:17412068C>T	uc002ngb.3	-	2	598	c.358G>A	c.(358-360)GAG>AAG	p.E120K		NM_024527	NP_078803	Q96I13	ABHD8_HUMAN	abhydrolase domain containing 8	120							hydrolase activity				0						TCTGCCAGCTCCACCTCCAGG	0.537													10	8					0	0	0.000978	0	0
PLVAP	83483	broad.mit.edu	37	19	17476802	17476802	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:17476802G>A	uc002ngk.1	-	3	522	c.472C>T	c.(472-474)CTC>TTC	p.L158F		NM_031310	NP_112600	Q9BX97	PLVAP_HUMAN	plasmalemma vesicle associated protein	158	Extracellular (Potential).					caveola|integral to membrane|perinuclear region of cytoplasm					0						AGCATGAAGAGCAAGGCTAAG	0.557													9	26					0	0	0.004482	0	0
NDUFA13	51079	broad.mit.edu	37	19	19627014	19627014	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:19627014C>T	uc010xqy.1	+	1	475	c.216C>T	c.(214-216)TTC>TTT	p.F72F	TSSK6_uc002nmq.2_5'Flank|TSSK6_uc002nmr.2_5'Flank|NDUFA13_uc002nms.2_Silent_p.F72F|NDUFA13_uc010xqx.1_Silent_p.F72F	NM_015965	NP_057049	Q9P0J0	NDUAD_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	Error:Variant_position_missing_in_Q9P0J0_after_alignment					apoptotic nuclear change|induction of apoptosis by extracellular signals|negative regulation of cell growth|negative regulation of transcription, DNA-dependent|negative regulation of translation|protein import into nucleus|reactive oxygen species metabolic process|respiratory electron transport chain	integral to membrane|mitochondrial respiratory chain complex I|nucleoplasm	ATP binding|NADH dehydrogenase (ubiquinone) activity|protein binding				0					NADH(DB00157)	TAAGTCACTTCCGCCCGGGAC	0.607													5	12					0	0	0.000602	0	0
CILP2	148113	broad.mit.edu	37	19	19656741	19656741	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:19656741C>T	uc002nmv.3	+	8	3472	c.3387C>T	c.(3385-3387)ATC>ATT	p.I1129I	CILP2_uc002nmw.3_Silent_p.I1135I	NM_153221	NP_694953	Q8IUL8	CILP2_HUMAN	cartilage intermediate layer protein 2	1129						proteinaceous extracellular matrix	carbohydrate binding|carboxypeptidase activity			ovary(1)	1						TTGGTGACATCCGCAGGGAGA	0.731													8	9					0	0	0.006214	0	0
ZNF253	56242	broad.mit.edu	37	19	20002636	20002636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:20002636C>T	uc002noj.2	+	4	672	c.580C>T	c.(580-582)CAT>TAT	p.H194Y	ZNF253_uc002nok.2_Missense_Mutation_p.H118Y|ZNF253_uc002nol.2_RNA	NM_021047	NP_066385	O75346	ZN253_HUMAN	zinc finger protein 253	194	C2H2-type 1.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAGAAAATTCATACTGGAGA	0.353													12	20					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	19	20975437	20975437	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:20975437C>T	uc002npe.2	+	2		c.298C>T								Homo sapiens zinc finger protein 66, mRNA (cDNA clone MGC:87430 IMAGE:5270688), complete cds.																		GAAACCTGGTCTTTCTTGGTG	0.328													10	62					0	0	0.001368	0	0
ZNF493	284443	broad.mit.edu	37	19	21606712	21606712	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:21606712T>C	uc002npx.2	+	2	1147	c.867T>C	c.(865-867)TCT>TCC	p.S289S	ZNF493_uc002npw.2_Silent_p.S417S|ZNF493_uc002npy.2_Silent_p.S289S	NM_175910	NP_787106	Q6ZR52	ZN493_HUMAN	zinc finger protein 493 isoform 1	289	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						ATAAGGAGTCTTCACACCTTA	0.348													3	51					0	0	0.004672	0	0
ZNF257	113835	broad.mit.edu	37	19	22271303	22271303	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:22271303C>T	uc010ecx.2	+	4	920	c.751C>T	c.(751-753)CAT>TAT	p.H251Y	ZNF257_uc010ecy.2_Missense_Mutation_p.H219Y	NM_033468	NP_258429	Q9Y2Q1	ZN257_HUMAN	zinc finger protein 257	251	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_lung(12;0.0961)|Lung NSC(12;0.103)				TAAGGTAATTCATACTAGAGA	0.393													9	25					0	0	0.004482	0	0
ZNF676	163223	broad.mit.edu	37	19	22363113	22363113	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:22363113C>T	uc002nqs.1	-	3	1724	c.1406G>A	c.(1405-1407)AGA>AAA	p.R469K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	469	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				AGCATGAATTCTCTTGTGTTT	0.393													20	68					0	0	0.001882	0	0
ZNF98	148198	broad.mit.edu	37	19	22574587	22574587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:22574587G>A	uc002nqt.2	-	4	1572	c.1450C>T	c.(1450-1452)CAT>TAT	p.H484Y		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	484	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TCTCCAGTATGAATTACCTTA	0.378													21	35					0	0	0.005443	0	0
ZNF99	7652	broad.mit.edu	37	19	22941109	22941109	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:22941109C>T	uc010xrh.1	-	5	1329	c.1329G>A	c.(1327-1329)AAG>AAA	p.K443K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				TGTAGGGTTTCTTTCCAGTAT	0.338													26	32					0	0	0.001786	0	0
C19orf2	8725	broad.mit.edu	37	19	30502112	30502112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:30502112C>T	uc002nsr.2	+	9	1177	c.1147C>T	c.(1147-1149)CCG>TCG	p.P383S	C19orf2_uc002nsq.2_Missense_Mutation_p.P365S|C19orf2_uc002nss.2_Missense_Mutation_p.P343S|C19orf2_uc002nst.2_Missense_Mutation_p.P307S	NM_003796	NP_003787	O94763	RMP_HUMAN	RPB5-mediating protein isoform a	383					protein folding|regulation of transcription from RNA polymerase II promoter|response to virus	DNA-directed RNA polymerase II, core complex|prefoldin complex	transcription corepressor activity|unfolded protein binding			ovary(1)|kidney(1)	2	Ovarian(5;0.000902)|Breast(6;0.0203)|Esophageal squamous(110;0.195)	Hepatocellular(1079;0.137)|Renal(1328;0.228)	STAD - Stomach adenocarcinoma(5;5.36e-06)|Lung(7;0.0144)|LUAD - Lung adenocarcinoma(5;0.115)	STAD - Stomach adenocarcinoma(1328;0.18)		CCAGGAGCTGCCGACCATCAG	0.512													48	62					0	0	0.003610	0	0
ZNF536	9745	broad.mit.edu	37	19	31038939	31038939	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:31038939C>T	uc002nsu.1	+	4	2551	c.2413C>T	c.(2413-2415)CGG>TGG	p.R805W	ZNF536_uc010edd.1_Missense_Mutation_p.R805W	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	805					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCATCGGGAGCGGCAGAACGG	0.537													11	66					0	0	0.001368	0	0
ZNF536	9745	broad.mit.edu	37	19	31039973	31039973	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:31039973C>T	uc002nsu.1	+	4	3585	c.3447C>T	c.(3445-3447)ATC>ATT	p.I1149I	ZNF536_uc010edd.1_Silent_p.I1149I	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	1149					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCATCCTGATCCCCGAAACCA	0.552													22	18					0	0	0.002299	0	0
TSHZ3	57616	broad.mit.edu	37	19	31770324	31770324	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:31770324G>A	uc002nsy.3	-	2	440	c.375C>T	c.(373-375)TTC>TTT	p.F125F		NM_020856	NP_065907	Q63HK5	TSH3_HUMAN	zinc finger protein 537	125					negative regulation of transcription, DNA-dependent|regulation of respiratory gaseous exchange by neurological system process	growth cone|nucleus	chromatin binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(2)|pancreas(1)|lung(1)	8	Esophageal squamous(110;0.226)					AGTTGGAGAGGAAGTTGTTGT	0.448													17	21					0	0	0.004990	0	0
SLC7A9	11136	broad.mit.edu	37	19	33355126	33355126	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:33355126G>A	uc002ntv.3	-	4	471	c.354C>T	c.(352-354)ATC>ATT	p.I118I	SLC7A9_uc002ntt.3_RNA|SLC7A9_uc002ntu.3_Silent_p.I118I|SLC7A9_uc002ntw.3_5'UTR	NM_001126335	NP_001119807	P82251	BAT1_HUMAN	solute carrier family 7, member 9	118	Helical; (Potential).				blood coagulation|cellular amino acid metabolic process|ion transport|leukocyte migration|protein complex assembly	integral to plasma membrane	L-cystine transmembrane transporter activity|neutral amino acid transmembrane transporter activity|peptide antigen binding			skin(1)	1	Esophageal squamous(110;0.137)				L-Cystine(DB00138)	GCTTAATGACGATCAGGCTGG	0.572													8	32					0	0	0.004482	0	0
ZNF570	148268	broad.mit.edu	37	19	37975998	37975998	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:37975998C>T	uc002ogk.1	+	5	2003	c.1474C>T	c.(1474-1476)CAT>TAT	p.H492Y	ZNF570_uc010efl.1_Missense_Mutation_p.H548Y|ZNF570_uc010xtr.1_Missense_Mutation_p.H289Y	NM_144694	NP_653295	Q96NI8	ZN570_HUMAN	zinc finger protein 570	492	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TCAGAGAATTCATACTGGAGA	0.428													29	33					0	0	0.008361	0	0
ZNF781	163115	broad.mit.edu	37	19	38160067	38160067	+	Nonstop_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:38160067T>G	uc002ogy.2	-	4	1725	c.983A>C	c.(982-984)TAA>TCA	p.*328S	ZNF781_uc002ogz.2_Nonstop_Mutation_p.*323S	NM_152605	NP_689818	Q8N8C0	ZN781_HUMAN	zinc finger protein 781	328					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GATGTCTCATTAGATGTGCAT	0.363													34	67					0	0	0.003755	0	0
SIPA1L3	23094	broad.mit.edu	37	19	38610002	38610002	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:38610002G>A	uc002ohk.2	+	9	2857	c.2348G>A	c.(2347-2349)GGA>GAA	p.G783E		NM_015073	NP_055888	O60292	SI1L3_HUMAN	signal-induced proliferation-associated 1 like	783	Rap-GAP.				regulation of small GTPase mediated signal transduction	intracellular	GTPase activator activity			ovary(1)|central_nervous_system(1)	2			Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			ATCCCCAGTGGAACCACATTC	0.542													54	51					0	0	0.003610	0	0
RASGRP4	115727	broad.mit.edu	37	19	38903927	38903927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:38903927G>A	uc002oir.2	-	11	1536	c.1322C>T	c.(1321-1323)CCC>CTC	p.P441L	RASGRP4_uc010efz.1_RNA|RASGRP4_uc010ega.1_RNA|RASGRP4_uc010xua.1_Missense_Mutation_p.P372L|RASGRP4_uc010xub.1_Missense_Mutation_p.P407L|RASGRP4_uc010xuc.1_Missense_Mutation_p.P349L|RASGRP4_uc010xud.1_Missense_Mutation_p.P344L|RASGRP4_uc010xue.1_Missense_Mutation_p.P252L|RASGRP4_uc010egb.2_Missense_Mutation_p.P427L	NM_170604	NP_733749	Q8TDF6	GRP4_HUMAN	RAS guanyl releasing protein 4 isoform a	441					activation of phospholipase C activity|cell growth|cell proliferation|myeloid cell differentiation|positive regulation of Ras protein signal transduction|regulation of G-protein coupled receptor protein signaling pathway|response to extracellular stimulus|small GTPase mediated signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cytoplasm|membrane fraction|plasma membrane|soluble fraction	diacylglycerol binding|GTP-dependent protein binding|metal ion binding|Ras guanyl-nucleotide exchange factor activity			pancreas(1)|lung(1)|skin(1)	3	all_cancers(60;4.21e-06)		Lung(45;0.00172)|LUSC - Lung squamous cell carcinoma(53;0.00272)			TGCATTGAAGGGGGAGGGTGG	0.642													8	14					0	0	0.003080	0	0
MAP4K1	11184	broad.mit.edu	37	19	39100552	39100553	+	Missense_Mutation	DNP	GG	AA	AA	rs140049352	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:39100552_39100553GG>AA	uc002oix.1	-	12	1031_1032	c.923_924CC>TT	c.(922-924)CCC>CTT	p.P308L	MAP4K1_uc002oiw.1_5'Flank|MAP4K1_uc002oiy.1_Missense_Mutation_p.P308L|MAP4K1_uc010xug.1_5'UTR	NM_007181	NP_009112	Q92918	M4K1_HUMAN	mitogen-activated protein kinase kinase kinase	308					activation of JUN kinase activity|peptidyl-serine phosphorylation		ATP binding|MAP kinase kinase kinase kinase activity|protein binding|small GTPase regulator activity			skin(4)|lung(3)|ovary(1)	8	all_cancers(60;6.42e-06)|Ovarian(47;0.103)		Lung(45;0.000751)|LUSC - Lung squamous cell carcinoma(53;0.00272)			CTCTCACCTCGGGCTCCTCATC	0.589													11	41					0	0	0.004672	0	0
FCGBP	8857	broad.mit.edu	37	19	40363276	40363276	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:40363276C>T	uc002omp.3	-	32	14802	c.14794G>A	c.(14794-14796)GAG>AAG	p.E4932K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4932	VWFD 12.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCCACAGCCTCGCCGTCCACG	0.652													4	5					0	0	0.000248	0	0
FCGBP	8857	broad.mit.edu	37	19	40368475	40368475	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:40368475G>A	uc002omp.3	-	28	12881	c.12873C>T	c.(12871-12873)TTC>TTT	p.F4291F		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4291	VWFD 10.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GGCAGGTGGTGAAGGGGCCCC	0.617													14	61					0	0	0.007413	0	0
FCGBP	8857	broad.mit.edu	37	19	40419943	40419943	+	Silent	SNP	C	T	T	rs148754431	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:40419943C>T	uc002omp.3	-	6	3059	c.3051G>A	c.(3049-3051)CGG>CGA	p.R1017R		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	1017	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GACCCCCACCCCGCAGAGCCA	0.617													22	5					0	0	0.002780	0	0
FCGBP	8857	broad.mit.edu	37	19	40420098	40420098	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:40420098C>T	uc002omp.3	-	6	2904	c.2896G>A	c.(2896-2898)GGC>AGC	p.G966S		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	966	VWFD 2.					extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			GCATCCCTGCCCTGTCGGAAC	0.602													7	25					0	0	0.004482	0	0
PRX	57716	broad.mit.edu	37	19	40903633	40903633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:40903633G>A	uc002onr.2	-	7	895	c.626C>T	c.(625-627)GCC>GTC	p.A209V	PRX_uc002onq.2_Missense_Mutation_p.A70V|PRX_uc002ons.2_3'UTR	NM_181882	NP_870998	Q9BXM0	PRAX_HUMAN	periaxin isoform 2	209					axon ensheathment	cytoplasm|nucleus|plasma membrane	protein binding			ovary(2)	2			Lung(22;6.24e-05)|LUSC - Lung squamous cell carcinoma(20;0.000384)			AGGAGCGGCGGCGGCCAGCCG	0.716													7	0					0	0	0.004482	0	0
SNRPA	6626	broad.mit.edu	37	19	41265428	41265428	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:41265428C>T	uc002ooz.2	+	3	874	c.339C>T	c.(337-339)CCC>CCT	p.P113P	SNRPA_uc002opa.2_Silent_p.P63P	NM_004596	NP_004587	P09012	SNRPA_HUMAN	small nuclear ribonucleoprotein polypeptide A	113						nucleoplasm|spliceosomal complex	nucleotide binding|protein binding|RNA binding			skin(2)|ovary(1)|central_nervous_system(1)	4			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			AGAGGAAGCCCAAGAGCCAGG	0.627													9	30					0	0	0.006214	0	0
CYP2B6	1555	broad.mit.edu	37	19	41510224	41510225	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:41510224_41510225CC>TT	uc002opr.1	+	3	364_365	c.357_358CC>TT	c.(355-360)AACCGC>AATTGC	p.R120C	CYP2A7_uc002opo.2_Intron|CYP2B6_uc010xvu.1_Missense_Mutation_p.R80C	NM_000767	NP_000758	P20813	CP2B6_HUMAN	cytochrome P450, family 2, subfamily B,	120					cellular ketone metabolic process|exogenous drug catabolic process|steroid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(20;0.00322)		Bupropion(DB01156)|Butalbital(DB00241)|Carbamazepine(DB00564)|Clopidogrel(DB00758)|Cyclophosphamide(DB00531)|Efavirenz(DB00625)|Ifosfamide(DB01181)|Memantine(DB01043)|Meperidine(DB00454)|Mephenytoin(DB00532)|Methadone(DB00333)|Methylphenobarbital(DB00849)|Midazolam(DB00683)|Nelfinavir(DB00220)|Nevirapine(DB00238)|Nicotine(DB00184)|Orphenadrine(DB01173)|Phenytoin(DB00252)|Propofol(DB00818)|Ritonavir(DB00503)|Selegiline(DB01037)|Sertraline(DB01104)|Ticlopidine(DB00208)|Troleandomycin(DB01361)	CCAATGGAAACCGCTGGAAGGT	0.545													4	18					0	0	0.004672	0	0
AXL	558	broad.mit.edu	37	19	41762487	41762487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:41762487G>A	uc010ehj.2	+	18	2357	c.2167G>A	c.(2167-2169)GAC>AAC	p.D723N	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehk.2_Missense_Mutation_p.D714N	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	723	Cytoplasmic (Potential).|Protein kinase.					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						GAGTCTAGCTGACCGTGTCTA	0.567													15	26					0	0	0.004007	0	0
AXL	558	broad.mit.edu	37	19	41765666	41765667	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:41765666_41765667CC>TT	uc010ehj.2	+	20	2732_2733	c.2542_2543CC>TT	c.(2542-2544)CCT>TTT	p.P848F	CYP2F1_uc010xvw.1_Intron|HNRNPUL1_uc002opz.3_5'Flank|HNRNPUL1_uc002oqa.3_5'Flank|AXL_uc010ehk.2_Missense_Mutation_p.P839F|HNRNPUL1_uc010ehl.1_5'Flank	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	848	Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						CCAGCCAGACCCTAAGGATTCC	0.599													26	8					0	0	0.004672	0	0
CEACAM5	1048	broad.mit.edu	37	19	42221500	42221500	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:42221500G>A	uc002ork.2	+	5	1206	c.1085G>A	c.(1084-1086)AGC>AAC	p.S362N	CEACAM5_uc002orj.1_Missense_Mutation_p.S361N|CEACAM5_uc002orl.2_Missense_Mutation_p.S362N	NM_004363	NP_004354	P06731	CEAM5_HUMAN	carcinoembryonic antigen-related cell adhesion	362	Ig-like 4.					anchored to membrane|basolateral plasma membrane|integral to plasma membrane				skin(2)	2				OV - Ovarian serous cystadenocarcinoma(3;0.00278)|all cancers(3;0.00625)|Epithelial(262;0.0379)|GBM - Glioblastoma multiforme(1328;0.142)		AATAATCAGAGCCTCCCGGTC	0.512													66	38					0	0	0.003610	0	0
CEACAM3	1084	broad.mit.edu	37	19	42315244	42315244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:42315244G>A	uc002orn.1	+	7	804	c.728G>A	c.(727-729)CGG>CAG	p.R243Q	CEACAM3_uc010eia.1_Intron|CEACAM3_uc002oro.1_RNA	NM_001815	NP_001806	P40198	CEAM3_HUMAN	carcinoembryonic antigen-related cell adhesion	243	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						ATTTACTGCCGGATGGACCAC	0.552													12	33					0	0	0.002450	0	0
ERF	2077	broad.mit.edu	37	19	42752989	42752989	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:42752989G>A	uc002ote.3	-	4	1433	c.1275C>T	c.(1273-1275)ATC>ATT	p.I425I	ERF_uc002otd.3_Silent_p.I156I	NM_006494	NP_006485	P50548	ERF_HUMAN	Ets2 repressor factor	425					cell proliferation|regulation of transcription from RNA polymerase II promoter	nucleus	ligand-regulated transcription factor activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			lung(1)|kidney(1)|central_nervous_system(1)|skin(1)	4		Prostate(69;0.00682)				GCTCCACCTTGATCTGTGGTG	0.662													17	69					0	0	0.008871	0	0
PSG7	5676	broad.mit.edu	37	19	43429951	43429951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:43429951G>A	uc002ovl.3	-	6	1319	c.1217C>T	c.(1216-1218)TCC>TTC	p.S406F	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Missense_Mutation_p.S319F|PSG7_uc002ous.1_RNA|PSG7_uc002out.1_Missense_Mutation_p.S132F|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Intron|PSG6_uc002ovi.2_Intron|PSG6_uc010xwk.1_Intron|PSG11_uc002ovk.1_Missense_Mutation_p.S319F|PSG7_uc010xwl.1_Missense_Mutation_p.S284F	NM_002783	NP_002774	Q13046	PSG7_HUMAN	pregnancy specific beta-1-glycoprotein 7	406	Ig-like C2-type 3.				female pregnancy	extracellular region					0		Prostate(69;0.00682)				CACGGATTTGGAGCTTTCCTT	0.473													144	42					0	0	0.003610	0	0
PSG5	5673	broad.mit.edu	37	19	43680079	43680079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:43680079C>T	uc002ovu.2	-	3	783	c.652G>A	c.(652-654)GAA>AAA	p.E218K	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Intron|PSG5_uc002ovx.2_Missense_Mutation_p.E218K|PSG5_uc002ovv.2_Missense_Mutation_p.E311K|PSG5_uc002ovw.2_Intron	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	218	Ig-like C2-type 1.				female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				TCCCGTATTTCACATTCATAG	0.517													32	98					0	0	0.002222	0	0
CD177	57126	broad.mit.edu	37	19	43859878	43859878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:43859878G>A	uc002owi.2	+	4	487	c.445G>A	c.(445-447)GAG>AAG	p.E149K	CD177_uc010eis.2_RNA|CD177_uc002owj.2_RNA	NM_020406	NP_065139	Q8N6Q3	CD177_HUMAN	CD177 molecule precursor	149	UPAR/Ly6 1.				blood coagulation|leukocyte migration	anchored to membrane|plasma membrane				central_nervous_system(1)	1		Prostate(69;0.00682)				GACAACAGAAGAGATCTGCCC	0.577													10	33					0	0	0.008291	0	0
ZNF283	284349	broad.mit.edu	37	19	44351370	44351370	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:44351370C>T	uc002oxr.3	+	7	885	c.617C>T	c.(616-618)TCC>TTC	p.S206F	ZNF283_uc002oxp.3_Missense_Mutation_p.S67F	NM_181845	NP_862828	Q8N7M2	ZN283_HUMAN	zinc finger protein 283	206	C2H2-type 1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)				ACAGAGAAATCCTATGTTTGT	0.338													13	40					0	0	0.001368	0	0
ZNF226	7769	broad.mit.edu	37	19	44679881	44679881	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:44679881C>T	uc002oyp.2	+	6	610	c.466C>T	c.(466-468)CCC>TCC	p.P156S	ZNF226_uc002oyq.2_Missense_Mutation_p.P39S|ZNF226_uc002oyr.2_Missense_Mutation_p.P39S|ZNF226_uc010ejg.2_3'UTR|ZNF226_uc002oys.2_Missense_Mutation_p.P156S|ZNF226_uc002oyt.2_Missense_Mutation_p.P156S	NM_001032373	NP_001027545	Q9NYT6	ZN226_HUMAN	zinc finger protein 226 isoform a	156					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				AGCAGATGGTCCCAATAATAC	0.403													17	7					0	0	0.004990	0	0
ZNF233	353355	broad.mit.edu	37	19	44777836	44777836	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:44777836C>T	uc002oyz.1	+	5	1150	c.1023C>T	c.(1021-1023)CTC>CTT	p.L341L	ZNF235_uc002oyx.1_Intron|ZNF235_uc010eji.2_Intron|ZNF233_uc002oyy.1_Silent_p.L156L	NM_181756	NP_861421	A6NK53	ZN233_HUMAN	zinc finger protein 233	341					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)	2		Prostate(69;0.0435)|all_neural(266;0.226)				GAGAGAACCTCTACAGATGTC	0.507													8	17					0	0	0.003080	0	0
ZNF229	7772	broad.mit.edu	37	19	44933922	44933922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:44933922C>T	uc002oze.1	-	6	1468	c.1034G>A	c.(1033-1035)GGA>GAA	p.G345E	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.G339E	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	345					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GGGCATGTCTCCCACAGGGGC	0.498													11	37					0	0	0.001368	0	0
CEACAM20	125931	broad.mit.edu	37	19	45028295	45028295	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:45028295C>T	uc010ejn.1	-	3	213	c.197_splice	c.e3-1	p.E66_splice	CEACAM20_uc010ejo.1_Splice_Site_p.E66_splice|CEACAM20_uc010ejp.1_Splice_Site_p.E66_splice|CEACAM20_uc010ejq.1_Splice_Site_p.E66_splice	NM_001102597	NP_001096067	Q6UY09	CEA20_HUMAN	carcinoembryonic antigen-related cell adhesion							integral to membrane				large_intestine(2)	2		Prostate(69;0.0352)				TTGGCCAGCTCTGAAAGCAAG	0.507													174	64					0	0	0.003610	0	0
DMWD	1762	broad.mit.edu	37	19	46289820	46289820	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:46289820G>A	uc002pdj.1	-	3	980	c.934C>T	c.(934-936)CAC>TAC	p.H312Y	DMWD_uc002pdk.1_Missense_Mutation_p.H312Y|DMWD_uc010eko.1_5'UTR	NM_004943	NP_004934	Q09019	DMWD_HUMAN	dystrophia myotonica-containing WD repeat motif	312	WD 2.				meiosis						0		Ovarian(192;0.0308)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00604)|GBM - Glioblastoma multiforme(486;0.0807)|Epithelial(262;0.236)		GAGTCGAAGTGGAAGACGCGC	0.662													8	16					0	0	0.003080	0	0
ZC3H4	23211	broad.mit.edu	37	19	47570822	47570822	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:47570822G>A	uc002pga.3	-	15	2741	c.2703C>T	c.(2701-2703)CCC>CCT	p.P901P	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	901							nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		GGCTGCCTTCGGGCTTGGAGG	0.701													16	6					0	0	0.004007	0	0
CARD8	22900	broad.mit.edu	37	19	48733884	48733884	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:48733884G>A	uc002pie.3	-	6	841	c.528C>T	c.(526-528)GCC>GCT	p.A176A	CARD8_uc002pii.3_Silent_p.A282A|CARD8_uc010xzi.1_Silent_p.A177A|CARD8_uc010els.2_Silent_p.A215A|CARD8_uc010xzj.1_Silent_p.A282A|CARD8_uc010xzk.1_Silent_p.A201A|CARD8_uc002pif.3_Silent_p.A176A|CARD8_uc002pig.3_Silent_p.A7A|CARD8_uc002pih.3_Silent_p.A232A|CARD8_uc010xzl.1_Silent_p.A232A|CARD8_uc010xzm.1_Silent_p.A282A	NM_014959	NP_055774	Q9Y2G2	CARD8_HUMAN	caspase recruitment domain family, member 8	176					negative regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-1 beta secretion	cytoplasm|nucleus	caspase activator activity|NACHT domain binding|protein homodimerization activity				0		all_lung(116;0.000112)|Lung NSC(112;0.000192)|all_epithelial(76;0.000349)|all_neural(266;0.0228)|Ovarian(192;0.113)|Prostate(7;0.184)		OV - Ovarian serous cystadenocarcinoma(262;0.000112)|all cancers(93;0.000293)|Epithelial(262;0.0129)|GBM - Glioblastoma multiforme(486;0.0336)		GCTCCACCCGGGCTGGATGCT	0.577													68	22					0	0	0.003610	0	0
CCDC114	93233	broad.mit.edu	37	19	48801296	48801296	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:48801296A>C	uc002pir.2	-	12	2035	c.1352T>G	c.(1351-1353)CTT>CGT	p.L451R	CCDC114_uc002piq.2_Missense_Mutation_p.L260R|CCDC114_uc002pio.2_Missense_Mutation_p.L488R|CCDC114_uc002pis.1_Missense_Mutation_p.L131R	NM_144577	NP_653178	Q96M63	CC114_HUMAN	coiled-coil domain containing 114 isoform 2	451										ovary(1)	1		all_epithelial(76;9.64e-05)|all_lung(116;0.000147)|Lung NSC(112;0.000251)|Prostate(7;0.0187)|all_neural(266;0.0228)|Ovarian(192;0.113)		OV - Ovarian serous cystadenocarcinoma(262;0.000134)|all cancers(93;0.000162)|Epithelial(262;0.0134)|GBM - Glioblastoma multiforme(486;0.0143)		CTTCTTCGGAAGGTCCTCCAG	0.677													6	23					0	0	0.001984	0	0
GRIN2D	2906	broad.mit.edu	37	19	48918144	48918144	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:48918144C>A	uc002pjc.3	+	6	1524	c.1436C>A	c.(1435-1437)CCG>CAG	p.P479Q		NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	479	Extracellular (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	GCCCCCCGCCCGGAAAAGCGC	0.597													5	73					0.00198382	0.00276662	0.001984	1	0
RUVBL2	10856	broad.mit.edu	37	19	49502594	49502594	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:49502594C>T	uc002plr.1	+	2	44	c.31C>T	c.(31-33)CCG>TCG	p.P11S	RUVBL2_uc002plq.1_5'UTR|RUVBL2_uc010yab.1_Missense_Mutation_p.P11S|RUVBL2_uc002pls.1_RNA|RUVBL2_uc010emn.1_5'UTR|RUVBL2_uc010yac.1_5'UTR	NM_006666	NP_006657	Q9Y230	RUVB2_HUMAN	RuvB-like 2	11					cellular response to UV|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|protein folding|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|membrane|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|ATP-dependent DNA helicase activity|damaged DNA binding|identical protein binding|unfolded protein binding				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000449)|OV - Ovarian serous cystadenocarcinoma(262;0.000555)|GBM - Glioblastoma multiforme(486;0.00585)|Epithelial(262;0.047)		AACCAAAGTCCCGGAGATCCG	0.552													16	51					0	0	0.001523	0	0
PPFIA3	8541	broad.mit.edu	37	19	49632189	49632189	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:49632189C>T	uc002pmr.2	+	4	759	c.427C>T	c.(427-429)CCG>TCG	p.P143S	PPFIA3_uc010yai.1_RNA|PPFIA3_uc010emt.2_Missense_Mutation_p.P67S|PPFIA3_uc010yaj.1_RNA|PPFIA3_uc002pms.2_Missense_Mutation_p.P11S	NM_003660	NP_003651	O75145	LIPA3_HUMAN	PTPRF interacting protein alpha 3	143						cell surface|cytoplasm	protein binding			lung(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.36e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.000203)|GBM - Glioblastoma multiforme(486;0.00307)|Epithelial(262;0.00677)		GGCCCAGTCCCCGGGTGGGGT	0.587													7	26					0	0	0.003080	0	0
RPL13A	23521	broad.mit.edu	37	19	49995048	49995048	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:49995048C>T	uc002pny.2	+	8	610	c.588C>T	c.(586-588)CTC>CTT	p.L196L	RPL13A_uc002pnz.2_Silent_p.L135L|RPL13A_uc002poa.2_Silent_p.L186L	NM_012423	NP_036555	P40429	RL13A_HUMAN	ribosomal protein L13a	196					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CAGAGGTCCTCAAGACCCACG	0.527													21	4					0	0	0.002299	0	0
FCGRT	2217	broad.mit.edu	37	19	50029284	50029284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:50029284C>T	uc002poe.2	+	7	1492	c.1006C>T	c.(1006-1008)CGT>TGT	p.R336C	FCGRT_uc002pod.2_RNA|FCGRT_uc002pog.2_Missense_Mutation_p.R336C|FCGRT_uc002poi.2_RNA|RCN3_uc002poj.2_5'Flank	NM_001136019	NP_001129491	P55899	FCGRN_HUMAN	Fc fragment of IgG, receptor, transporter, alpha	336	Cytoplasmic (Potential).				antigen processing and presentation|female pregnancy|immune response	integral to membrane|MHC class I protein complex	IgG binding|receptor activity			ovary(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.0966)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00291)|GBM - Glioblastoma multiforme(134;0.0156)		GATCTCCCTTCGTGGAGACGA	0.597													30	87					0	0	0.002836	0	0
MYBPC2	4606	broad.mit.edu	37	19	50944201	50944201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:50944201G>A	uc002psf.2	+	8	688	c.637G>A	c.(637-639)GAG>AAG	p.E213K		NM_004533	NP_004524	Q14324	MYPC2_HUMAN	myosin binding protein C, fast type	213					cell adhesion|muscle filament sliding	cytosol|myosin filament	actin binding|structural constituent of muscle			breast(1)	1		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.0079)|GBM - Glioblastoma multiforme(134;0.0144)		CATCCCCCCGGAGATTTGGGA	0.577													6	13					0	0	0.001168	0	0
LRRC4B	94030	broad.mit.edu	37	19	51020884	51020884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:51020884C>T	uc002pss.2	-	3	2223	c.2086G>A	c.(2086-2088)GAA>AAA	p.E696K	ASPDH_uc002psr.3_5'Flank	NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	696	Cytoplasmic (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		AGCAGAGGTTCGTGGATGGAG	0.592													5	16					0	0	0.001168	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51645690	51645690	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:51645690A>C	uc002pvv.1	+	1	133	c.64A>C	c.(64-66)AAC>CAC	p.N22H	SIGLEC7_uc002pvw.1_Missense_Mutation_p.N22H|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Missense_Mutation_p.N22H	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	22	Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		ACAGAAGAGTAACCGGAAGGA	0.517													13	7					0	0	0.001368	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51656392	51656392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:51656392G>A	uc002pvv.1	+	7	1363	c.1294G>A	c.(1294-1296)GAA>AAA	p.E432K	SIGLEC7_uc002pvw.1_Missense_Mutation_p.E339K|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_3'UTR	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	432	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		CTCAGGGGAGGAAAGAGAGAT	0.532													35	31					0	0	0.004289	0	0
SIGLECP3	284367	broad.mit.edu	37	19	51671596	51671596	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:51671596G>A	uc010ycv.1	+	3	745	c.735G>A	c.(733-735)ACG>ACA	p.T245T	SIGLECP3_uc010ycu.1_Silent_p.T245T|SIGLECP3_uc002pvy.3_Silent_p.T245T|SIGLECP3_uc002pvz.3_Silent_p.T245T					SubName: Full=cDNA FLJ56974, moderately similar to Myeloid cell surface antigen CD33;												0						GTGTGACCACGGAGAGAACCA	0.622													3	6					0	0	0.004672	0	0
SIGLEC10	89790	broad.mit.edu	37	19	51916984	51916984	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:51916984G>A	uc002pwo.2	-	10	2419	c.1803C>T	c.(1801-1803)GTC>GTT	p.V601V	SIGLEC10_uc002pwp.2_Silent_p.V543V|SIGLEC10_uc002pwq.2_Silent_p.V448V|SIGLEC10_uc002pwr.2_Silent_p.V506V|SIGLEC10_uc010ycy.1_Silent_p.V416V|SIGLEC10_uc010ycz.1_Silent_p.V458V|SIGLEC10_uc010eow.2_Silent_p.V318V|SIGLEC10_uc002pws.1_Silent_p.V342V	NM_033130	NP_149121	Q96LC7	SIG10_HUMAN	sialic acid binding Ig-like lectin 10 precursor	601	Cytoplasmic (Potential).				cell adhesion	extracellular region|integral to membrane|plasma membrane	sugar binding			skin(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000668)|OV - Ovarian serous cystadenocarcinoma(262;0.0101)		CAGCCGTCGGGACCACATTGA	0.537													33	16					0	0	0.002836	0	0
SIGLEC6	946	broad.mit.edu	37	19	52033958	52033958	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:52033958C>T	uc002pwy.2	-	3	845	c.683G>A	c.(682-684)AGA>AAA	p.R228K	SIGLEC6_uc002pwz.2_Missense_Mutation_p.R228K|SIGLEC6_uc002pxa.2_Missense_Mutation_p.R228K|SIGLEC6_uc010ydb.1_Missense_Mutation_p.R181K|SIGLEC6_uc010ydc.1_Missense_Mutation_p.R217K|SIGLEC6_uc010eoz.1_Missense_Mutation_p.R206K|SIGLEC6_uc010epb.1_Missense_Mutation_p.R181K|SIGLEC6_uc010epa.1_Missense_Mutation_p.R217K	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	228	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CTGGATGGTTCTCTCCATGGT	0.632													26	15					0	0	0.006320	0	0
MIR99B	407056	broad.mit.edu	37	19	52195888	52195888	+	RNA	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:52195888T>C	hsa-mir-99b|MI0000746	+			c.24T>C			uc002pxg.1_RNA|uc002pxh.1_RNA|uc002pxi.2_5'Flank|MIRLET7E_hsa-let-7e|MI0000066_5'Flank|uc002pxj.1_5'Flank|MIR125A_hsa-mir-125a|MI0000469_5'Flank|NCRNA00085_uc002pxk.3_5'Flank|NCRNA00085_uc002pxl.3_5'Flank																	0						AGAACCGACCTTGCGGGGCCT	0.478													14	5					0	0	0.008871	0	0
FPR2	2358	broad.mit.edu	37	19	52272026	52272026	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:52272026C>T	uc002pxr.2	+	2	160	c.115C>T	c.(115-117)CTC>TTC	p.L39F	FPR2_uc002pxs.3_Missense_Mutation_p.L39F|FPR2_uc010epf.2_Missense_Mutation_p.L39F	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	39	Helical; Name=1; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						CACCTTTGTCCTCGGGGTCCT	0.552													26	15					0	0	0.006320	0	0
FPR3	2359	broad.mit.edu	37	19	52327436	52327436	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:52327436G>A	uc002pxt.1	+	2	619	c.435G>A	c.(433-435)GTG>GTA	p.V145V		NM_002030	NP_002021	P25089	FPR3_HUMAN	formyl peptide receptor-like 2	145	Helical; Name=4; (Potential).				cellular component movement|chemotaxis	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(4)|breast(1)|skin(1)	6						CCAAGAGGGTGATGACGGGAC	0.478													31	11					0	0	0.007291	0	0
PPP2R1A	5518	broad.mit.edu	37	19	52705250	52705250	+	Silent	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:52705250T>A	uc002pyp.2	+	2	291	c.132T>A	c.(130-132)GTT>GTA	p.V44V	PPP2R1A_uc010ydk.1_Nonsense_Mutation_p.L23*|PPP2R1A_uc010epm.1_Silent_p.V84V|PPP2R1A_uc002pyq.2_5'UTR	NM_014225	NP_055040	P30153	2AAA_HUMAN	alpha isoform of regulatory subunit A, protein	44	PP2A subunit B binding.|HEAT 1.				ceramide metabolic process|chromosome segregation|G2/M transition of mitotic cell cycle|inactivation of MAPK activity|induction of apoptosis|negative regulation of cell growth|negative regulation of tyrosine phosphorylation of Stat3 protein|protein complex assembly|protein dephosphorylation|regulation of cell adhesion|regulation of cell differentiation|regulation of DNA replication|regulation of transcription, DNA-dependent|regulation of Wnt receptor signaling pathway|response to organic substance|RNA splicing|second-messenger-mediated signaling	chromosome, centromeric region|cytosol|membrane|microtubule cytoskeleton|mitochondrion|nucleus|protein phosphatase type 2A complex|soluble fraction	antigen binding|protein heterodimerization activity|protein phosphatase type 2A regulator activity			endometrium(31)|ovary(28)|lung(2)|breast(2)|skin(1)|kidney(1)|pancreas(1)	66				GBM - Glioblastoma multiforme(134;0.00456)|OV - Ovarian serous cystadenocarcinoma(262;0.015)		CCCTTGGGGTTGAAAGGACCC	0.517			Mis		clear cell ovarian carcinoma								14	33					0	0	0.003163	0	0
ZNF331	55422	broad.mit.edu	37	19	54081122	54081122	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:54081122G>A	uc002qbx.1	+	7	2742	c.1308G>A	c.(1306-1308)GCG>GCA	p.A436A	ZNF331_uc002qby.1_Silent_p.A436A|ZNF331_uc002qbz.1_Silent_p.A436A|ZNF331_uc002qca.1_Silent_p.A436A|ZNF331_uc010eqr.1_Silent_p.A436A|ZNF331_uc002qcb.1_Silent_p.A436A|ZNF331_uc002qcc.1_Silent_p.A436A|ZNF331_uc002qcd.1_Silent_p.A436A	NM_018555	NP_061025	Q9NQX6	ZN331_HUMAN	zinc finger protein 331	436					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|lung(1)	6				GBM - Glioblastoma multiforme(134;0.00555)		ACAGTGGGGCGAAATCCTACG	0.483			T	?	follicular thyroid adenoma								10	23					0	0	0.006214	0	0
NLRP12	91662	broad.mit.edu	37	19	54307284	54307284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:54307284C>T	uc002qch.3	-	6	2727	c.2507G>A	c.(2506-2508)GGA>GAA	p.G836E	NLRP12_uc010eqw.2_Missense_Mutation_p.G119E|NLRP12_uc002qci.3_Missense_Mutation_p.G836E|NLRP12_uc002qcj.3_Missense_Mutation_p.G837E|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.G837E	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	836	LRR 1.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CAGTGCATTTCCTGTCAGGTC	0.562													10	24					0	0	0.006214	0	0
NLRP12	91662	broad.mit.edu	37	19	54313568	54313569	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:54313568_54313569CC>TT	uc002qch.3	-	3	1564_1565	c.1344_1345GG>AA	c.(1342-1347)GGGGCC>GGAACC	p.A449T	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.A449T|NLRP12_uc002qcj.3_Missense_Mutation_p.A449T|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.A449T	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	449	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		AGGCGCGGGGCCCCCGGCTTGG	0.619													10	34					0	0	0.004672	0	0
NCR1	9437	broad.mit.edu	37	19	55423586	55423586	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:55423586G>A	uc002qib.2	+	6	771	c.733G>A	c.(733-735)GAC>AAC	p.D245N	NCR1_uc002qic.2_Missense_Mutation_p.D244N|NCR1_uc002qie.2_Intron|NCR1_uc002qid.2_Missense_Mutation_p.D150N|NCR1_uc002qif.2_Intron|NCR1_uc010esj.2_Missense_Mutation_p.D138N	NM_004829	NP_004820	O76036	NCTR1_HUMAN	natural cytotoxicity triggering receptor 1	245	Extracellular (Potential).				cellular defense response|natural killer cell activation|regulation of natural killer cell mediated cytotoxicity	integral to plasma membrane|SWI/SNF complex	receptor activity|receptor signaling protein activity			large_intestine(1)|ovary(1)	2				GBM - Glioblastoma multiforme(193;0.0449)		ACTCCAGAAAGGTAAGTAGAC	0.498													14	34					0	0	0.004007	0	0
NLRP4	147945	broad.mit.edu	37	19	56370018	56370018	+	Missense_Mutation	SNP	G	A	A	rs142191212	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:56370018G>A	uc002qmd.3	+	3	1681	c.1259G>A	c.(1258-1260)CGG>CAG	p.R420Q	NLRP4_uc002qmf.2_Missense_Mutation_p.R345Q|NLRP4_uc010etf.2_Missense_Mutation_p.R251Q	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	420	NACHT.						ATP binding	p.R420Q(1)		ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		GACGACCTCCGGAGAAATGGG	0.582													29	23					0	0	0.002836	0	0
NLRP13	126204	broad.mit.edu	37	19	56423175	56423175	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:56423175C>T	uc010ygg.1	-	5	2033	c.2008G>A	c.(2008-2010)GAA>AAA	p.E670K		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	670							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		GCTTGGAGTTCTTCGTCCTCC	0.408													25	47					0	0	0.003330	0	0
NLRP8	126205	broad.mit.edu	37	19	56485018	56485018	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:56485018G>A	uc002qmh.2	+	7	2606	c.2535G>A	c.(2533-2535)TCG>TCA	p.S845S	NLRP8_uc010etg.2_Intron	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	845	LRR 3.					cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		TCTCCCATAGGATAGAGAACT	0.512													86	64					0	0	0.003610	0	0
ZNF71	58491	broad.mit.edu	37	19	57132752	57132752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:57132752C>T	uc002qnm.3	+	3	335	c.97C>T	c.(97-99)CCT>TCT	p.P33S		NM_021216	NP_067039	Q9NQZ8	ZNF71_HUMAN	zinc finger protein 71	33						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(1)	1				GBM - Glioblastoma multiforme(193;0.062)|Lung(386;0.0681)|LUSC - Lung squamous cell carcinoma(496;0.18)		TGCCAGGGGTCCTGGCTCAGA	0.587													7	18					0	0	0.001984	0	0
PEG3	5178	broad.mit.edu	37	19	57325321	57325321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:57325321C>T	uc002qnu.2	-	7	4840	c.4489G>A	c.(4489-4491)GAG>AAG	p.E1497K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E1468K|PEG3_uc002qnv.2_Missense_Mutation_p.E1497K|PEG3_uc002qnw.2_Missense_Mutation_p.E1373K|PEG3_uc002qnx.2_Missense_Mutation_p.E1371K|PEG3_uc010etr.2_Missense_Mutation_p.E1497K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1497	Glu-rich.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ACCTGAATCTCTTGATCTTCA	0.488													25	56					0	0	0.003954	0	0
PEG3	5178	broad.mit.edu	37	19	57328838	57328838	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:57328838G>A	uc002qnu.2	-	7	1323	c.972C>T	c.(970-972)CGC>CGT	p.R324R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.R295R|PEG3_uc002qnv.2_Silent_p.R324R|PEG3_uc002qnw.2_Silent_p.R200R|PEG3_uc002qnx.2_Silent_p.R198R|PEG3_uc010etr.2_Silent_p.R324R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	324					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		ATTTGGAACTGCGTGACACAT	0.473													40	15					0	0	0.006999	0	0
PEG3	5178	broad.mit.edu	37	19	57335843	57335843	+	Silent	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:57335843G>T	uc002qnu.2	-	1	532	c.181C>A	c.(181-183)CGG>AGG	p.R61R	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_5'UTR|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Silent_p.R61R|PEG3_uc002qnv.2_Silent_p.R61R|PEG3_uc002qnw.2_Intron|PEG3_uc002qnx.2_Intron|PEG3_uc010etr.2_Silent_p.R61R	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	61	SCAN box.				apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		AGGGTCTTCCGAGGCCCAACA	0.507													26	20					2.4375e-19	3.45377e-19	0.007291	1	0
ZNF530	348327	broad.mit.edu	37	19	58118495	58118495	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:58118495C>T	uc002qpk.2	+	3	1822	c.1602C>T	c.(1600-1602)CTC>CTT	p.L534L	ZNF547_uc002qpm.3_Intron|ZNF530_uc002qpl.2_RNA	NM_020880	NP_065931	Q6P9A1	ZN530_HUMAN	zinc finger protein 530	534	C2H2-type 11.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0443)|Breast(46;0.0848)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0257)		GCTCTGCCCTCCTTCAGCATA	0.458													7	36					0	0	0.001984	0	0
RPS5	6193	broad.mit.edu	37	19	58904809	58904809	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:58904809G>A	uc002qsn.2	+	4	474	c.402G>A	c.(400-402)GTG>GTA	p.V134V	RPS5_uc002qso.2_Silent_p.V134V	NM_001009	NP_001000	P46782	RS5_HUMAN	ribosomal protein S5	134					endocrine pancreas development|regulation of translational fidelity|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	mRNA binding|structural constituent of ribosome				0		all_cancers(17;1.71e-22)|all_epithelial(17;1.69e-16)|Lung NSC(17;2.25e-06)|all_lung(17;9.97e-06)|Colorectal(82;3.46e-05)|Renal(17;0.00179)|all_neural(62;0.00607)|Breast(46;0.0194)|Ovarian(87;0.0443)|Medulloblastoma(540;0.184)		UCEC - Uterine corpus endometrioid carcinoma (67;0.171)|GBM - Glioblastoma multiforme(193;0.0323)|Lung(386;0.0543)|LUSC - Lung squamous cell carcinoma(496;0.176)		CCGGGACTGTGAGACGACAGG	0.642													9	29					0	0	0.000978	0	0
TPO	7173	broad.mit.edu	37	2	1488370	1488370	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:1488370C>T	uc002qww.2	+	9	1432	c.1341C>T	c.(1339-1341)ATC>ATT	p.I447I	TPO_uc010ewj.2_RNA|TPO_uc002qwu.2_Silent_p.I447I|TPO_uc002qwr.2_Silent_p.I447I|TPO_uc002qwx.2_Silent_p.I447I|TPO_uc010yio.1_Silent_p.I274I|TPO_uc010yip.1_Silent_p.I447I|TPO_uc002qwy.1_5'UTR|TPO_uc002qwz.2_RNA	NM_000547	NP_000538	P07202	PERT_HUMAN	thyroid peroxidase isoform a	447	Extracellular (Potential).		I -> F (in TDH2A).		cellular nitrogen compound metabolic process|hormone biosynthetic process|hydrogen peroxide catabolic process	cell surface|cytoplasm|integral to plasma membrane	calcium ion binding|heme binding|iodide peroxidase activity			ovary(7)|pancreas(6)|skin(5)|lung(1)|kidney(1)	20	all_hematologic(175;0.0487)|Acute lymphoblastic leukemia(172;0.0627)	all_cancers(51;0.0338)		all cancers(51;0.0356)|OV - Ovarian serous cystadenocarcinoma(76;0.0748)|Epithelial(75;0.12)	Carbimazole(DB00389)|Methimazole(DB00763)|Propylthiouracil(DB00550)	CTGCACAGATCATCACCCTGA	0.587													11	7					0	0	0.000978	0	0
MYT1L	23040	broad.mit.edu	37	2	1926200	1926200	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:1926200G>A	uc002qxe.2	-	10	2168	c.1341C>T	c.(1339-1341)GCC>GCT	p.A447A	MYT1L_uc002qxd.2_Silent_p.A447A|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	447					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TCTCCCTCATGGCCTTTGCTC	0.542													39	60					0	0	0.003214	0	0
MYT1L	23040	broad.mit.edu	37	2	1983500	1983500	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:1983500A>G	uc002qxe.2	-	6	877	c.50T>C	c.(49-51)GTT>GCT	p.V17A	MYT1L_uc002qxd.2_Missense_Mutation_p.V17A|MYT1L_uc002qxf.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	17					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		CATACCTCGAACCCCTTTGGA	0.592													5	7					0	0	0.000602	0	0
ALLC	55821	broad.mit.edu	37	2	3750043	3750044	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:3750043_3750044GG>AA	uc010ewt.2	+	12	1227_1228	c.1066_1067GG>AA	c.(1066-1068)GGG>AAG	p.G356K	ALLC_uc002qyf.2_Missense_Mutation_p.G127K	NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	375							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		CGTCCCCGACGGGGGAGTGAGC	0.589										HNSCC(21;0.051)			5	8					0	0	0.004672	0	0
KIDINS220	57498	broad.mit.edu	37	2	8958895	8958895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:8958895G>A	uc002qzc.2	-	3	319	c.137C>T	c.(136-138)GCC>GTC	p.A46V	KIDINS220_uc010yiv.1_Intron|KIDINS220_uc002qzd.2_Missense_Mutation_p.A4V|KIDINS220_uc010yiw.1_Missense_Mutation_p.A46V	NM_020738	NP_065789	Q9ULH0	KDIS_HUMAN	kinase D-interacting substrate of 220 kDa	46	Cytoplasmic (Potential).|ANK 2.				activation of MAPKK activity|nerve growth factor receptor signaling pathway	cytosol|integral to membrane				ovary(3)|central_nervous_system(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					GCCTTGTTCGGCAGCTATCAT	0.328													46	26					0	0	0.003610	0	0
SMC6	79677	broad.mit.edu	37	2	17877687	17877687	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:17877687A>T	uc002rco.2	-	22	2697	c.2401T>A	c.(2401-2403)TTA>ATA	p.L801I	SMC6_uc010exo.2_Missense_Mutation_p.L801I|SMC6_uc002rcn.2_Missense_Mutation_p.L801I|SMC6_uc002rcp.1_Missense_Mutation_p.L827I	NM_001142286	NP_001135758	Q96SB8	SMC6_HUMAN	SMC6 protein	801	Potential.				DNA recombination|DNA repair	chromosome|nucleus	ATP binding			breast(4)|upper_aerodigestive_tract(1)|kidney(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GCAAGGTTTAATTCATCCTGT	0.313													27	23					0	0	0.007291	0	0
APOB	338	broad.mit.edu	37	2	21239422	21239422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:21239422C>T	uc002red.2	-	21	3349	c.3221G>A	c.(3220-3222)GGA>GAA	p.G1074E		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1074					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GAGGATTGTTCCGAGGTCAAC	0.448													117	222					0	0	0.003610	0	0
GPR113	165082	broad.mit.edu	37	2	26534181	26534181	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:26534181G>A	uc002rhe.3	-	11	2415	c.2415C>T	c.(2413-2415)TCC>TCT	p.S805S	GPR113_uc010yky.1_Silent_p.S736S|GPR113_uc002rhb.1_Silent_p.S408S|GPR113_uc010eyk.1_Silent_p.S606S|GPR113_uc002rhc.1_Silent_p.S408S|GPR113_uc002rhd.1_RNA	NM_001145168	NP_001138640	Q8IZF5	GP113_HUMAN	G-protein coupled receptor 113 isoform 1	805	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCGGAAATAGGAGATCTTGT	0.612													4	11					0	0	0.000602	0	0
OTOF	9381	broad.mit.edu	37	2	26699765	26699765	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:26699765G>A	uc002rhk.2	-	22	2797	c.2670C>T	c.(2668-2670)TTC>TTT	p.F890F	OTOF_uc002rhh.2_Silent_p.F143F|OTOF_uc002rhi.2_Silent_p.F200F|OTOF_uc002rhj.2_Silent_p.F143F	NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	890	Cytoplasmic (Potential).				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GCACCTTAAGGAAGAGCGTCT	0.642													6	16					0	0	0.003080	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27500758	27500758	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:27500758A>T	uc002rjl.1	+	4	668	c.250A>T	c.(250-252)ATA>TTA	p.I84L	SLC30A3_uc010ylh.1_5'Flank|DNAJC5G_uc010yli.1_Intron|DNAJC5G_uc002rjm.1_Missense_Mutation_p.I84L	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	84	J.				protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGCTCATGCCATACTGAGCGA	0.453													17	32					0	0	0.004990	0	0
ZNF512	84450	broad.mit.edu	37	2	27821046	27821046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:27821046C>T	uc002rla.2	+	3	289	c.202C>T	c.(202-204)CCA>TCA	p.P68S	ZNF512_uc010ylv.1_5'UTR|ZNF512_uc010ylw.1_Missense_Mutation_p.P67S|ZNF512_uc002rlb.2_5'UTR|ZNF512_uc010ylx.1_5'UTR|ZNF512_uc002rlc.2_5'UTR|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_5'UTR	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	68					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					GAGTGATTTTCCAGCATCTTT	0.418													49	18					0	0	0.003610	0	0
ZNF512	84450	broad.mit.edu	37	2	27830716	27830716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:27830716C>T	uc002rla.2	+	10	1028	c.941C>T	c.(940-942)TCC>TTC	p.S314F	ZNF512_uc010ylv.1_Missense_Mutation_p.S235F|ZNF512_uc010ylw.1_Missense_Mutation_p.S285F|ZNF512_uc002rlb.2_Missense_Mutation_p.S235F|ZNF512_uc010ylx.1_Missense_Mutation_p.S235F|ZNF512_uc002rlc.2_Missense_Mutation_p.S235F|ZNF512_uc010yly.1_RNA|ZNF512_uc010ylz.1_Missense_Mutation_p.S207F	NM_032434	NP_115810	Q96ME7	ZN512_HUMAN	zinc finger protein 512	314					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TTGCAGATATCCTTCTTTCCA	0.468													11	17					0	0	0.002450	0	0
C2orf71	388939	broad.mit.edu	37	2	29295194	29295194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:29295194C>T	uc002rmt.1	-	1	1934	c.1934G>A	c.(1933-1935)AGA>AAA	p.R645K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	645					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						GGCGGCTGCTCTGGGCTGCAG	0.592													18	33					0	0	0.007413	0	0
XDH	7498	broad.mit.edu	37	2	31573069	31573069	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:31573069G>A	uc002rnv.1	-	25	2731	c.2652C>T	c.(2650-2652)TTC>TTT	p.F884F		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	884					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TGTCCATGTGGAATAAAGCTC	0.507													20	34					0	0	0.003330	0	0
BIRC6	57448	broad.mit.edu	37	2	32706501	32706501	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:32706501C>T	uc010ezu.2	+	38	7656	c.7522C>T	c.(7522-7524)CTT>TTT	p.L2508F		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2508					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					AAAGGACCCTCTTGCAGCCAA	0.269													23	7					0	0	0.001882	0	0
BIRC6	57448	broad.mit.edu	37	2	32724828	32724829	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:32724828_32724829GG>AA	uc010ezu.2	+	46	8817_8818	c.8683_8684GG>AA	c.(8683-8685)GGA>AAA	p.G2895K		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	2895					anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					ATGCTTTGGGGGACTCTTTGCC	0.416													46	89					0	0	0.004672	0	0
VIT	5212	broad.mit.edu	37	2	37041342	37041342	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:37041342G>A	uc002rpl.2	+	16	2141	c.1920G>A	c.(1918-1920)GCG>GCA	p.A640A	VIT_uc002rpm.2_Silent_p.A618A|VIT_uc010ezv.2_Silent_p.A596A|VIT_uc010ezw.2_Silent_p.A597A	NM_053276	NP_444506	Q6UXI7	VITRN_HUMAN	vitrin	625	VWFA 2.					proteinaceous extracellular matrix				ovary(1)|pancreas(1)	2		all_hematologic(82;0.248)				TCACCTATGCGATAGGCGTTG	0.522													6	19					0	0	0.001984	0	0
MAP4K3	8491	broad.mit.edu	37	2	39499443	39499443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:39499443G>A	uc002rro.2	-	26	2045	c.1954C>T	c.(1954-1956)CCT>TCT	p.P652S	MAP4K3_uc002rrp.2_Missense_Mutation_p.P631S|MAP4K3_uc010yns.1_Missense_Mutation_p.P205S	NM_003618	NP_003609	Q8IVH8	M4K3_HUMAN	mitogen-activated protein kinase kinase kinase	652	CNH.				JNK cascade		ATP binding|protein binding|protein serine/threonine kinase activity|small GTPase regulator activity			ovary(3)|lung(3)|stomach(1)|pancreas(1)	8		all_hematologic(82;0.211)				ATTCTGTCAGGGAGTTTGTGT	0.368													15	31					0	0	0.004007	0	0
SLC8A1	6546	broad.mit.edu	37	2	40342499	40342499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:40342499C>T	uc002rrx.2	-	10	2840	c.2816G>A	c.(2815-2817)GGG>GAG	p.G939E	uc002rrw.2_Intron|SLC8A1_uc002rry.2_Missense_Mutation_p.G934E|SLC8A1_uc002rrz.2_Missense_Mutation_p.G926E|SLC8A1_uc002rsa.2_Missense_Mutation_p.G903E|SLC8A1_uc002rsd.3_Missense_Mutation_p.G903E	NM_021097	NP_066920	P32418	NAC1_HUMAN	solute carrier family 8 (sodium/calcium	939	Extracellular (Potential).				cell communication|muscle contraction|platelet activation	integral to plasma membrane	calcium:sodium antiporter activity|calmodulin binding|heat shock protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4					Alpha-Linolenic Acid(DB00132)|Icosapent(DB00159)	AGTCCGGGGCCCACCCAGCTC	0.537													25	9					0	0	0.007291	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43958684	43958684	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:43958684C>T	uc010yny.1	+	19	2969	c.2886C>T	c.(2884-2886)TCC>TCT	p.S962S	PLEKHH2_uc002rtf.3_Silent_p.S961S	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	962	MyTH4.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GAATCATTTCCCCTCTGACAA	0.338													85	177					0	0	0.003610	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43992615	43992615	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:43992615T>C	uc010yny.1	+	30	4443	c.4360T>C	c.(4360-4362)TTT>CTT	p.F1454L		NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	1454						cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				AAAGGCAGCATTTCACCACCT	0.483													88	217					0	0	0.003610	0	0
SLC3A1	6519	broad.mit.edu	37	2	44540973	44540973	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:44540973G>A	uc002ruc.3	+	9	1579	c.1501_splice	c.e9-1	p.N501_splice	SLC3A1_uc002rua.2_Splice_Site_p.N501_splice|SLC3A1_uc002rub.2_Splice_Site_p.N501_splice|SLC3A1_uc002rud.3_Splice_Site_p.N223_splice|SLC3A1_uc002rue.3_Splice_Site_p.N121_splice	NM_000341	NP_000332	Q07837	SLC31_HUMAN	solute carrier family 3, member 1						carbohydrate metabolic process|cellular amino acid metabolic process|ion transport	integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity|catalytic activity|cation binding|L-cystine transmembrane transporter activity				0		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)			L-Cystine(DB00138)	TTTTGACATAGAATACCCTTC	0.378													8	29					0	0	0.004482	0	0
ATP6V1E2	90423	broad.mit.edu	37	2	46739670	46739670	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:46739670C>T	uc002ruy.2	-	2	1295	c.181G>A	c.(181-183)GAG>AAG	p.E61K	ATP6V1E2_uc002ruz.2_Missense_Mutation_p.E61K	NM_080653	NP_542384	Q96A05	VATE2_HUMAN	ATPase, H+ transporting, lysosomal 31kDa, V1	61					cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain	proton-transporting ATPase activity, rotational mechanism			ovary(1)|skin(1)	2		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.151)			ATCTGCTTCTCCTTTTTCTCA	0.458													26	67					0	0	0.003330	0	0
PIGF	5281	broad.mit.edu	37	2	46840911	46840911	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:46840911A>G	uc002rvd.2	-	3	406	c.242T>C	c.(241-243)TTG>TCG	p.L81S	PIGF_uc002rvc.2_Missense_Mutation_p.L81S	NM_002643	NP_002634	Q07326	PIGF_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	81					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	ethanolaminephosphotransferase activity				0		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.175)	LUSC - Lung squamous cell carcinoma(58;0.114)			ACAGCATTTCAAAAATCCAGT	0.308													3	10					0	0	0.004672	0	0
PSME4	23198	broad.mit.edu	37	2	54175661	54175661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:54175661G>A	uc002rxp.2	-	3	453	c.397C>T	c.(397-399)CTT>TTT	p.L133F	PSME4_uc010yop.1_Missense_Mutation_p.L19F|PSME4_uc010yoq.1_RNA|PSME4_uc010fbu.1_5'UTR|PSME4_uc010fbv.1_Intron	NM_014614	NP_055429	Q14997	PSME4_HUMAN	proteasome (prosome, macropain) activator	133					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|cell differentiation|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|M/G1 transition of mitotic cell cycle|mRNA metabolic process|multicellular organismal development|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|spermatogenesis|viral reproduction	nuclear speck|proteasome complex	binding			ovary(2)|breast(2)|pancreas(1)	5			Lung(47;0.125)|LUSC - Lung squamous cell carcinoma(58;0.181)			GCTCTTGAAAGAAGTTCCTTT	0.348													24	68					0	0	0.008361	0	0
PAPOLG	64895	broad.mit.edu	37	2	61019308	61019308	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:61019308C>T	uc002sai.2	+	17	1794	c.1563C>T	c.(1561-1563)TCC>TCT	p.S521S	PAPOLG_uc002saj.2_Silent_p.S210S|PAPOLG_uc002sak.2_Silent_p.S56S|PAPOLG_uc010fch.2_Silent_p.S210S	NM_022894	NP_075045	Q9BWT3	PAPOG_HUMAN	poly(A) polymerase gamma	521					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)|central_nervous_system(1)	2	all_hematologic(2;0.0797)		LUSC - Lung squamous cell carcinoma(5;1.19e-07)|Lung(5;2.86e-06)|Epithelial(17;0.0768)			GACTTCAATCCAAAAGATTGT	0.423													13	30					0	0	0.003163	0	0
USP34	9736	broad.mit.edu	37	2	61528560	61528560	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:61528560A>C	uc002sbe.2	-	28	3869	c.3847T>G	c.(3847-3849)TCA>GCA	p.S1283A		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	1283					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TGTCCAGATGAAATCATCCTG	0.343													73	37					0	0	0.003610	0	0
USP34	9736	broad.mit.edu	37	2	61597488	61597488	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:61597488G>A	uc002sbe.2	-	10	1241	c.1219C>T	c.(1219-1221)CAA>TAA	p.Q407*		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	407					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TCAATATGTTGAGTACTCAGT	0.234													74	38					0	0	0.003610	0	0
ADD2	119	broad.mit.edu	37	2	70904955	70904955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:70904955C>T	uc002sgz.2	-	12	1903	c.1438G>A	c.(1438-1440)GAA>AAA	p.E480K	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.E480K|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.E480K|ADD2_uc010fdt.1_Missense_Mutation_p.E480K|ADD2_uc002shc.1_Missense_Mutation_p.E480K|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.E496K	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	480					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						TTTGGGTTTTCGATGCGAATC	0.517													5	14					0	0	0.001984	0	0
ADD2	119	broad.mit.edu	37	2	70906069	70906069	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:70906069G>A	uc002sgz.2	-	11	1615	c.1150C>T	c.(1150-1152)CGC>TGC	p.R384C	ADD2_uc010fds.1_RNA|ADD2_uc002sgy.2_Missense_Mutation_p.R384C|ADD2_uc002sha.2_Intron|ADD2_uc002sgx.2_Missense_Mutation_p.R384C|ADD2_uc010fdt.1_Missense_Mutation_p.R384C|ADD2_uc002shc.1_Missense_Mutation_p.R384C|ADD2_uc002shd.1_Intron|ADD2_uc010fdu.1_Missense_Mutation_p.R400C	NM_001617	NP_001608	P35612	ADDB_HUMAN	adducin 2 isoform a	384					actin filament bundle assembly|barbed-end actin filament capping|positive regulation of protein binding	cytoplasm|F-actin capping protein complex|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding			ovary(2)|pancreas(1)	3						AAGGGGTGGCGATACGTGTAA	0.498													18	44					0	0	0.001882	0	0
MPHOSPH10	10199	broad.mit.edu	37	2	71377056	71377056	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:71377056C>T	uc002sht.1	+	11	2309	c.1957C>T	c.(1957-1959)CAA>TAA	p.Q653*		NM_005791	NP_005782	O00566	MPP10_HUMAN	M-phase phosphoprotein 10	653	Potential.				RNA splicing, via transesterification reactions|rRNA processing	chromosome|nucleolus|small nucleolar ribonucleoprotein complex	protein binding			skin(2)|ovary(1)	3						ATTACAAGATCAAGTAAAAAT	0.294													19	38					0	0	0.006122	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746080	77746080	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:77746080G>A	uc002snr.2	-	3	1330	c.915C>T	c.(913-915)TCC>TCT	p.S305S	LRRTM4_uc002snq.2_Silent_p.S305S|LRRTM4_uc002sns.2_Silent_p.S305S|LRRTM4_uc002snt.2_Silent_p.S306S	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	305	Extracellular (Potential).					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		ACAATGTGATGGATATTAATG	0.353													8	15					0	0	0.003080	0	0
IMMT	10989	broad.mit.edu	37	2	86385725	86385725	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:86385725C>G	uc002sqz.3	-	10	1540	c.1152G>C	c.(1150-1152)TGG>TGC	p.W384C	IMMT_uc002sqy.3_Missense_Mutation_p.W125C|IMMT_uc002srb.3_Missense_Mutation_p.W373C|IMMT_uc002sra.3_Missense_Mutation_p.W383C|IMMT_uc010ytd.1_Missense_Mutation_p.W372C|IMMT_uc010yte.1_Missense_Mutation_p.W337C|IMMT_uc002src.1_Missense_Mutation_p.W125C|IMMT_uc002srd.2_Missense_Mutation_p.W384C	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	384	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						TCATTCCTTTCCACCCAGGAA	0.403													4	8					0	0	0.000248	0	0
REEP1	65055	broad.mit.edu	37	2	86509330	86509330	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:86509330G>A	uc002srh.3	-	2	212	c.68C>T	c.(67-69)TCC>TTC	p.S23F	REEP1_uc010ytg.1_5'UTR|REEP1_uc010yth.1_Intron|REEP1_uc010yti.1_Missense_Mutation_p.S23F	NM_022912	NP_075063	Q9H902	REEP1_HUMAN	receptor accessory protein 1 isoform 2	23					cell death|protein insertion into membrane	integral to membrane|mitochondrial membrane	olfactory receptor binding				0						AGCCTTGTAGGAATAATACGC	0.393													83	37					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	2	89117905	89117905	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:89117905G>A	uc002sth.1	-	1		c.40C>T								full-length cDNA clone CS0DL003YK18 of B cells (Ramos cell line) Cot 25-normalized of Homo sapiens (human).																		TTGCTACCTGGGTGGTGGCTA	0.458													5	8					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	2	89399424	89399424	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:89399424G>A	uc010ytr.1	-	46		c.5021C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TGGTGAGAGTGAAATCTGTCC	0.473													38	58					0	0	0.003610	0	0
GGT8P	645367	broad.mit.edu	37	2	91969081	91969081	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:91969081G>A	uc010fho.1	+	2		c.1412G>A				NR_003503				Homo sapiens cDNA FLJ31276 fis, clone KIDNE2006376, weakly similar to GAMMA-GLUTAMYLTRANSPEPTIDASE 1 PRECURSOR (EC 2.3.2.2).												0						TCCTGCTGCGGCTGGCTGACA	0.622													4	3					0	0	0.000248	0	0
MRPS5	64969	broad.mit.edu	37	2	95756221	95756221	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:95756221G>A	uc002sub.2	-	11	1196	c.978C>T	c.(976-978)CTC>CTT	p.L326L	MRPS5_uc002suc.2_RNA	NM_031902	NP_114108	P82675	RT05_HUMAN	mitochondrial ribosomal protein S5	326					translation	mitochondrion|ribosome	protein binding|RNA binding|structural constituent of ribosome			ovary(2)|central_nervous_system(1)	3						TGATGCCAATGAGCCGGCAGA	0.567													22	44					0	0	0.002780	0	0
ACTR1B	10120	broad.mit.edu	37	2	98273645	98273645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:98273645G>A	uc002syb.2	-	10	1206	c.998C>T	c.(997-999)CCG>CTG	p.P333L		NM_005735	NP_005726	P42025	ACTY_HUMAN	ARP1 actin-related protein 1 homolog B,	333						centrosome|dynactin complex	ATP binding|protein binding			skin(1)	1						CCGTTCCTGCGGGGCTGAGAT	0.607													7	12					0	0	0.006214	0	0
VWA3B	200403	broad.mit.edu	37	2	98928408	98928408	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:98928408C>T	uc002syo.2	+	27	3912	c.3648C>T	c.(3646-3648)CTC>CTT	p.L1216L	VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Silent_p.L873L|VWA3B_uc002syp.1_Silent_p.L608L|VWA3B_uc002syq.1_Silent_p.L492L|VWA3B_uc002syr.1_Silent_p.L533L|VWA3B_uc002sys.2_RNA	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	1216										ovary(3)|large_intestine(2)|skin(1)	6						AGCAGCCACTCCAGCAGGCGG	0.642													4	1					0	0	0.000248	0	0
AFF3	3899	broad.mit.edu	37	2	100170902	100170902	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:100170902G>A	uc002tag.2	-	23	3666	c.3430C>T	c.(3430-3432)CCG>TCG	p.P1144S	AFF3_uc002taf.2_Missense_Mutation_p.P1169S	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	1144					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						ATGGTCGACGGGGACAGGGCG	0.637													8	17					0	0	0.003080	0	0
AFF3	3899	broad.mit.edu	37	2	100210262	100210263	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:100210262_100210263GG>AA	uc002tag.2	-	14	2096_2097	c.1860_1861CC>TT	c.(1858-1863)GTCCCC>GTTTCC	p.P621S	AFF3_uc002taf.2_Missense_Mutation_p.P646S|AFF3_uc010fiq.1_Missense_Mutation_p.P621S|AFF3_uc010yvr.1_Missense_Mutation_p.P774S|AFF3_uc002tah.1_Missense_Mutation_p.P646S	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	621					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						GGCTCCGGGGGGACCACCACGC	0.743													7	22					0	0	0.004672	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105924378	105924378	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:105924378G>A	uc002tcq.2	-	2	465	c.381C>T	c.(379-381)AAC>AAT	p.N127N	TGFBRAP1_uc002tcr.3_Silent_p.N127N	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	127	CNH.				regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						CACTCACAGGGTTCTCGTTCA	0.562													17	38					0	0	0.008871	0	0
C2orf40	84417	broad.mit.edu	37	2	106688311	106688311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:106688311G>A	uc010fjf.2	+	2	199	c.91G>A	c.(91-93)GGA>AGA	p.G31R		NM_032411	NP_115787	Q9H1Z8	AUGN_HUMAN	esophageal cancer related gene 4 protein	31						extracellular region|transport vesicle					0						TGGCATAAGTGGAAATAAACT	0.358													4	13					0	0	0.000248	0	0
RGPD3	653489	broad.mit.edu	37	2	107050824	107050824	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:107050824G>A	uc010ywi.1	-	15	2122	c.2065C>T	c.(2065-2067)CAC>TAC	p.H689Y		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	689					intracellular transport		binding			ovary(1)	1						GCCTTCCTGTGAAAAATCTAT	0.274													51	36					0	0	0.003610	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107459888	107459888	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:107459888C>T	uc002tdq.2	-	2	665	c.546G>A	c.(544-546)AGG>AGA	p.R182R	ST6GAL2_uc002tdr.2_Silent_p.R182R|ST6GAL2_uc002tds.3_Silent_p.R182R	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	182	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						ACACGTGGCTCCTTCTCTGCC	0.647													16	19					0	0	0.006122	0	0
SLC20A1	6574	broad.mit.edu	37	2	113405310	113405310	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:113405310C>T	uc002tib.2	+	4	1002	c.556C>T	c.(556-558)CAT>TAT	p.H186Y	uc010fkq.1_5'Flank	NM_005415	NP_005406	Q8WUM9	S20A1_HUMAN	solute carrier family 20 (phosphate	186	Cytoplasmic (Potential).				phosphate metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	integral to plasma membrane	inorganic phosphate transmembrane transporter activity|receptor activity|sodium-dependent phosphate transmembrane transporter activity			ovary(2)	2						ATTCATCCTCCATAAGGTAAC	0.433													91	48					0	0	0.003610	0	0
PSD4	23550	broad.mit.edu	37	2	113955427	113955427	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:113955427C>T	uc002tjc.2	+	14	2744	c.2561C>T	c.(2560-2562)ACC>ATC	p.T854I	PSD4_uc002tjd.2_Missense_Mutation_p.T474I|PSD4_uc002tje.2_Missense_Mutation_p.T824I|PSD4_uc002tjf.2_Missense_Mutation_p.T475I|PSD4_uc002tjg.2_Missense_Mutation_p.T20I|PSD4_uc010yxs.1_Missense_Mutation_p.T84I|PSD4_uc002tjh.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	854	PH.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						ACGCATTACACCAAGAAGCCG	0.652													3	7					0	0	0.000248	0	0
STEAP3	55240	broad.mit.edu	37	2	120003549	120003549	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:120003549G>A	uc002tlp.2	+	3	634	c.477G>A	c.(475-477)AGG>AGA	p.R159R	STEAP3_uc002tlq.2_Silent_p.R169R|STEAP3_uc002tlr.2_Silent_p.R159R|STEAP3_uc010fle.2_Silent_p.R159R	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	159	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						CTGGCCCAAGGGATGGTAACA	0.413													13	41					0	0	0.004990	0	0
GLI2	2736	broad.mit.edu	37	2	121748125	121748125	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:121748125C>T	uc010flp.2	+	13	4665	c.4635C>T	c.(4633-4635)ACC>ACT	p.T1545T	GLI2_uc002tmq.1_Intron|GLI2_uc002tmr.1_Intron|GLI2_uc002tmt.3_Silent_p.T1217T|GLI2_uc002tmu.3_Silent_p.T1200T	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	1545					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				CCCGCCTCACCACCCCCCGAA	0.622													30	62					0	0	0.002836	0	0
CLASP1	23332	broad.mit.edu	37	2	122217648	122217648	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:122217648G>A	uc002tnc.2	-	12	1476	c.1086C>T	c.(1084-1086)TTC>TTT	p.F362F	CLASP1_uc002tna.2_5'Flank|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Silent_p.F362F|CLASP1_uc010yza.1_Silent_p.F362F|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tng.1_Silent_p.F362F	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	362					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					AATGTTGAAAGAAGTTATCAT	0.403													16	38					0	0	0.006122	0	0
SAP130	79595	broad.mit.edu	37	2	128757395	128757395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:128757395G>A	uc002tpp.2	-	10	1343	c.1211C>T	c.(1210-1212)CCC>CTC	p.P404L	SAP130_uc002tpn.2_Missense_Mutation_p.P165L|SAP130_uc002tpo.2_Missense_Mutation_p.P149L|SAP130_uc010fmd.2_Missense_Mutation_p.P404L|SAP130_uc002tpq.1_Missense_Mutation_p.P377L	NM_024545	NP_078821	Q9H0E3	SP130_HUMAN	Sin3A-associated protein, 130kDa isoform b	404					histone H3 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	STAGA complex	transcription coactivator activity			ovary(2)|skin(2)	4	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0771)		GGTACTTGTGGGAGCTTGCGT	0.473													46	22					0	0	0.003610	0	0
POTEF	728378	broad.mit.edu	37	2	130832640	130832640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:130832640G>A	uc010fmh.2	-	17	2805	c.2405C>T	c.(2404-2406)CCC>CTC	p.P802L		NM_001099771	NP_001093241	A5A3E0	POTEF_HUMAN	prostate, ovary, testis expressed protein on	802	Actin-like.					cell cortex	ATP binding			skin(3)|ovary(2)	5						CAGCAGGACGGGGTGCTCCTC	0.582													19	46					0	0	0.001523	0	0
R3HDM1	23518	broad.mit.edu	37	2	136396503	136396503	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:136396503C>T	uc002tuo.2	+	14	1400	c.1030C>T	c.(1030-1032)CAT>TAT	p.H344Y	R3HDM1_uc010fni.2_Missense_Mutation_p.H342Y|R3HDM1_uc002tup.2_Missense_Mutation_p.H288Y|R3HDM1_uc010zbh.1_Missense_Mutation_p.H176Y	NM_015361	NP_056176	Q15032	R3HD1_HUMAN	R3H domain containing 1	344							nucleic acid binding			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.127)		TACAAATAGCCATCAAAGCAG	0.398													32	72					0	0	0.002445	0	0
LCT	3938	broad.mit.edu	37	2	136562526	136562526	+	Silent	SNP	G	A	A	rs79686438		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:136562526G>A	uc002tuu.1	-	10	4286	c.4275C>T	c.(4273-4275)GCC>GCT	p.A1425A		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	1425	Extracellular (Potential).|4.|4 X approximate repeats.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		AACTGTCACAGGCCACGTCTC	0.537													8	25					0	0	0.003080	0	0
CXCR4	7852	broad.mit.edu	37	2	136873224	136873224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:136873224G>A	uc002tuz.2	-	2	369	c.274C>T	c.(274-276)CCC>TCC	p.P92S	CXCR4_uc002tuy.2_Missense_Mutation_p.P96S|CXCR4_uc010fnk.2_Missense_Mutation_p.P77S	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	92	Helical; Name=2.				activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	GCCCAGAAGGGAAGCGTGATG	0.522													16	33					0	0	0.003163	0	0
CXCR4	7852	broad.mit.edu	37	2	136875622	136875622	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:136875622C>T	uc002tuz.2	-	1	104	c.9G>A	c.(7-9)GGG>GGA	p.G3G	CXCR4_uc002tuy.2_5'Flank|CXCR4_uc010fnk.2_5'Flank	NM_003467	NP_003458	P61073	CXCR4_HUMAN	chemokine (C-X-C motif) receptor 4 isoform b	3	Important for chemokine binding, signaling and HIV-1 coreceptor activity.|Extracellular.			Missing: Reduced CXCL12 binding. Abolishes signaling.	activation of MAPK activity|apoptosis|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|inflammatory response|initiation of viral infection|regulation of chemotaxis|response to hypoxia|response to virus	cell leading edge|cell surface|cytoplasmic membrane-bounded vesicle|integral to membrane|plasma membrane	actin binding|C-X-C chemokine receptor activity|coreceptor activity|myosin light chain binding|ubiquitin binding|ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|large_intestine(1)|lung(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.155)	Framycetin(DB00452)	TTACACTGATCCCCTCCATGG	0.552													11	10					0	0	0.001368	0	0
THSD7B	80731	broad.mit.edu	37	2	137872762	137872762	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:137872762A>G	uc002tva.1	+	4	1175	c.1175A>G	c.(1174-1176)CAC>CGC	p.H392R	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.H282R	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CAGGATCCCCACTGGCATGTG	0.547													4	23					0	0	0.000602	0	0
THSD7B	80731	broad.mit.edu	37	2	137872823	137872824	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:137872823_137872824CC>TT	uc002tva.1	+	4	1236_1237	c.1236_1237CC>TT	c.(1234-1239)GCCCAG>GCTTAG	p.Q413*	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Nonsense_Mutation_p.Q303*	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGTACTGTGCCCAGAGCGTACC	0.609													6	4					0	0	0.004672	0	0
THSD7B	80731	broad.mit.edu	37	2	137928389	137928389	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:137928389T>C	uc002tva.1	+	6	1511	c.1511T>C	c.(1510-1512)GTT>GCT	p.V504A	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.V394A	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		GTGGAGTCTGTTCCTTGTGAG	0.498													25	18					0	0	0.003330	0	0
LRP1B	53353	broad.mit.edu	37	2	141081578	141081578	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:141081578G>A	uc002tvj.1	-	81	13370	c.12398C>T	c.(12397-12399)CCT>CTT	p.P4133L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	4133	Extracellular (Potential).				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		ACCATTTTTAGGTCCTGCTCC	0.299										TSP Lung(27;0.18)			34	49					0	0	0.003755	0	0
LRP1B	53353	broad.mit.edu	37	2	141143549	141143549	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:141143549G>A	uc002tvj.1	-	67	11416	c.10444C>T	c.(10444-10446)CAG>TAG	p.Q3482*		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3482	Extracellular (Potential).|LDL-receptor class A 25.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TTTTTACACTGGAATTCATGA	0.403										TSP Lung(27;0.18)			42	35					0	0	0.002522	0	0
LRP1B	53353	broad.mit.edu	37	2	141201961	141201961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:141201961G>A	uc002tvj.1	-	65	11204	c.10232C>T	c.(10231-10233)CCA>CTA	p.P3411L		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	3411	Extracellular (Potential).|LDL-receptor class A 23.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TAAGTTTACTGGGATACATTT	0.393										TSP Lung(27;0.18)			40	26					0	0	0.007835	0	0
LRP1B	53353	broad.mit.edu	37	2	141264456	141264456	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:141264456G>A	uc002tvj.1	-	53	9402	c.8430C>T	c.(8428-8430)TTC>TTT	p.F2810F		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2810	Extracellular (Potential).|LDL-receptor class A 18.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		TATGGCACATGAAAGCATTTT	0.388										TSP Lung(27;0.18)			38	21					0	0	0.003755	0	0
LRP1B	53353	broad.mit.edu	37	2	141747168	141747168	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:141747168C>T	uc002tvj.1	-	17	3675	c.2703G>A	c.(2701-2703)AAG>AAA	p.K901K	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	901	Extracellular (Potential).|LDL-receptor class A 4.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAAGCCATCTCTTGGGGATGC	0.413										TSP Lung(27;0.18)			29	40					0	0	0.008361	0	0
LRP1B	53353	broad.mit.edu	37	2	141747170	141747170	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:141747170T>A	uc002tvj.1	-	17	3673	c.2701A>T	c.(2701-2703)AAG>TAG	p.K901*	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	901	Extracellular (Potential).|LDL-receptor class A 4.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AGCCATCTCTTGGGGATGCAG	0.408										TSP Lung(27;0.18)			28	39					0	0	0.007291	0	0
NEB	4703	broad.mit.edu	37	2	152507129	152507129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:152507129C>T	uc010fnx.2	-	53	7377	c.7186G>A	c.(7186-7188)GAT>AAT	p.D2396N		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2396	Nebulin 64.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		TGCACAACATCGTTCTGATCA	0.388													93	40					0	0	0.003610	0	0
SCN3A	6328	broad.mit.edu	37	2	165984148	165984148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:165984148C>T	uc002ucx.2	-	18	3878	c.3386G>A	c.(3385-3387)AGC>AAC	p.S1129N	SCN3A_uc002ucy.2_Missense_Mutation_p.S1080N|SCN3A_uc002ucz.2_Missense_Mutation_p.S1080N|SCN3A_uc002uda.1_Missense_Mutation_p.S949N|SCN3A_uc002udb.1_Missense_Mutation_p.S949N	NM_006922	NP_008853	Q9NY46	SCN3A_HUMAN	sodium channel, voltage-gated, type III, alpha	1129						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10					Lamotrigine(DB00555)	TACCTCTTTGCTTTCTTCTAG	0.358													19	27					0	0	0.007413	0	0
SCN9A	6335	broad.mit.edu	37	2	167129258	167129258	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:167129258T>A	uc010fpl.2	-	17	3310	c.2969A>T	c.(2968-2970)TAT>TTT	p.Y990F	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1001						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TTGTTTCACATAATTTATTCC	0.348													7	24					0	0	0.003080	0	0
XIRP2	129446	broad.mit.edu	37	2	168105217	168105217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:168105217G>A	uc002udx.2	+	8	7333	c.7315G>A	c.(7315-7317)GAT>AAT	p.D2439N	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.D2264N|XIRP2_uc010fpq.2_Missense_Mutation_p.D2217N|XIRP2_uc010fpr.2_Intron|XIRP2_uc010fps.1_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2264					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAATAAGAACGATTTTTCCCC	0.408													28	68					0	0	0.002445	0	0
B3GALT1	8708	broad.mit.edu	37	2	168726441	168726441	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:168726441C>T	uc002udz.1	+	2	1243	c.892C>T	c.(892-894)CGC>TGC	p.R298C		NM_020981	NP_066191	Q9Y5Z6	B3GT1_HUMAN	UDP-Gal:betaGlcNAc beta	298	Lumenal (Potential).				lipid glycosylation|protein glycosylation	Golgi membrane|integral to membrane	UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			ovary(2)|pancreas(1)|skin(1)	4						GTGTAGGTATCGCCGAGTTAT	0.433													8	22					0	0	0.003080	0	0
DYNC1I2	1781	broad.mit.edu	37	2	172563838	172563839	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:172563838_172563839CC>TT	uc002uha.1	+	5	451_452	c.286_287CC>TT	c.(286-288)CCA>TTA	p.P96L	DYNC1I2_uc002uhc.2_Missense_Mutation_p.P90L|DYNC1I2_uc002uhb.1_Missense_Mutation_p.P90L|DYNC1I2_uc010zds.1_Missense_Mutation_p.P108L|DYNC1I2_uc002uhd.1_Missense_Mutation_p.P90L|DYNC1I2_uc002uhe.1_Missense_Mutation_p.P96L|DYNC1I2_uc002uhf.1_Missense_Mutation_p.P90L|DYNC1I2_uc010zdt.1_Missense_Mutation_p.P108L|DYNC1I2_uc002uhg.1_Missense_Mutation_p.P11L	NM_001378	NP_001369	Q13409	DC1I2_HUMAN	dynein, cytoplasmic 1, intermediate chain 2	96					G2/M transition of mitotic cell cycle|interspecies interaction between organisms|microtubule-based movement|transport	centrosome|cytosol|dynein complex|microtubule|vesicle	microtubule motor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.198)			TGTGAGCACTCCAAGTGAAGCT	0.45													21	38					0	0	0.004672	0	0
WIPF1	7456	broad.mit.edu	37	2	175436895	175436896	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:175436895_175436896GG>AA	uc002uiy.2	-	6	969_970	c.637_638CC>TT	c.(637-639)CCC>TTC	p.P213F	uc002uiw.2_Intron|uc002uix.1_Intron|WIPF1_uc002uja.2_Missense_Mutation_p.P213F|WIPF1_uc010fqt.1_Missense_Mutation_p.P213F|WIPF1_uc002ujc.1_Missense_Mutation_p.P213F|WIPF1_uc002uiz.2_Missense_Mutation_p.P213F|WIPF1_uc002ujb.1_Missense_Mutation_p.P213F|WIPF1_uc010zep.1_Missense_Mutation_p.P213F	NM_003387	NP_003378	O43516	WIPF1_HUMAN	WAS/WASL interacting protein family, member 1	213					actin polymerization or depolymerization|protein complex assembly	cytoplasmic membrane-bounded vesicle	actin binding|profilin binding			ovary(1)|skin(1)	2						CCCGGGGCTGGGCTGCCTGGGG	0.639													23	11					0	0	0.004672	0	0
AGPS	8540	broad.mit.edu	37	2	178299132	178299132	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:178299132A>C	uc002ull.2	+	3	475	c.428A>C	c.(427-429)AAA>ACA	p.K143T	AGPS_uc010zfb.1_Missense_Mutation_p.K53T	NM_003659	NP_003650	O00116	ADAS_HUMAN	alkyldihydroxyacetone phosphate synthase	143					ether lipid biosynthetic process	peroxisomal matrix|peroxisomal membrane|plasma membrane	alkylglycerone-phosphate synthase activity|flavin adenine dinucleotide binding|oxidoreductase activity			ovary(2)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0018)|Epithelial(96;0.00919)|all cancers(119;0.0358)			GTGGAGCATAAAACTACCTCT	0.289													19	13					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179396953	179396953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179396953C>T	uc010zfg.1	-	307	96909	c.96685G>A	c.(96685-96687)GAA>AAA	p.E32229K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E25924K|TTN_uc010zfi.1_Missense_Mutation_p.E25857K|TTN_uc010zfj.1_Missense_Mutation_p.E25732K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	33156							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTAGACTTTTCCTCCTTTGAC	0.413													20	13					0	0	0.001882	0	0
TTN	7273	broad.mit.edu	37	2	179399330	179399330	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179399330C>T	uc010zfg.1	-	307	94532	c.94308G>A	c.(94306-94308)CTG>CTA	p.L31436L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L25131L|TTN_uc010zfi.1_Silent_p.L25064L|TTN_uc010zfj.1_Silent_p.L24939L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	32363							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GCACATATACCAGTGTTCCAA	0.438													24	47					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179426117	179426117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179426117G>A	uc010zfg.1	-	275	77262	c.77038C>T	c.(77038-77040)CCT>TCT	p.P25680S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.P19375S|TTN_uc010zfi.1_Missense_Mutation_p.P19308S|TTN_uc010zfj.1_Missense_Mutation_p.P19183S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	26607							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCTCTTGCAGGGACTGGTTCA	0.413													32	98					0	0	0.004289	0	0
TTN	7273	broad.mit.edu	37	2	179436312	179436313	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179436312_179436313CC>TT	uc010zfg.1	-	275	67066_67067	c.66842_66843GG>AA	c.(66841-66843)CGG>CAA	p.R22281Q	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R15976Q|TTN_uc010zfi.1_Missense_Mutation_p.R15909Q|TTN_uc010zfj.1_Missense_Mutation_p.R15784Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23208							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGGAAGTGTCCCGTTTCTCAAC	0.411													10	11					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179453449	179453449	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179453449C>T	uc010zfg.1	-	253	55523	c.55299G>A	c.(55297-55299)GAG>GAA	p.E18433E	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.E12128E|TTN_uc010zfi.1_Silent_p.E12061E|TTN_uc010zfj.1_Silent_p.E11936E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	19360							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTTCCTTTTTCTCCAAAAAGT	0.423													16	34					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179456883	179456883	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179456883C>A	uc010zfg.1	-	251	52268	c.52044G>T	c.(52042-52044)AGG>AGT	p.R17348S	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.R11043S|TTN_uc010zfi.1_Missense_Mutation_p.R10976S|TTN_uc010zfj.1_Missense_Mutation_p.R10851S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18275							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CAACATCTCTCCTCTCAACCA	0.438													9	16					1.12685e-05	1.58076e-05	0.004482	1	0
TTN	7273	broad.mit.edu	37	2	179457984	179457984	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179457984C>T	uc010zfg.1	-	248	51471	c.51247G>A	c.(51247-51249)GAA>AAA	p.E17083K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E10778K|TTN_uc010zfi.1_Missense_Mutation_p.E10711K|TTN_uc010zfj.1_Missense_Mutation_p.E10586K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18010							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACCCGGAATTCATACTGACAT	0.388													27	69					0	0	0.005443	0	0
TTN	7273	broad.mit.edu	37	2	179554063	179554063	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179554063C>T	uc010zfg.1	-	121	28457	c.28233G>A	c.(28231-28233)AGG>AGA	p.R9411R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.R6072R|TTN_uc010fre.1_Silent_p.R522R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10338							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAACAGGTTTCCTTTCTTCAG	0.363													23	17					0	0	0.003954	0	0
TTN	7273	broad.mit.edu	37	2	179570047	179570047	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179570047C>T	uc010zfg.1	-	100	25950	c.25726G>A	c.(25726-25728)GAA>AAA	p.E8576K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E5237K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9503							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATATCAATTTCCTCTTCTTCT	0.333													9	6					0	0	0.004482	0	0
TTN	7273	broad.mit.edu	37	2	179574513	179574513	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179574513G>A	uc010zfg.1	-	96	25025	c.24801C>T	c.(24799-24801)TTC>TTT	p.F8267F	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.F4928F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	9194							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCTCAAGTTTGAAAGAATTCC	0.383													26	59					0	0	0.004656	0	0
TTN	7273	broad.mit.edu	37	2	179579723	179579723	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179579723G>A	uc010zfg.1	-	87	22682	c.22458C>T	c.(22456-22458)ATC>ATT	p.I7486I	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.I4147I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8413							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTGAGAGCGATGGAACCAA	0.473													34	70					0	0	0.004289	0	0
TTN	7273	broad.mit.edu	37	2	179585319	179585319	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179585319C>T	uc010zfg.1	-	77	19662	c.19438G>A	c.(19438-19440)GAA>AAA	p.E6480K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E3141K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7407							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCCGAAATTTCACATTGGAGA	0.388													7	15					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179592543	179592543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179592543C>T	uc010zfg.1	-	65	16254	c.16030G>A	c.(16030-16032)GAT>AAT	p.D5344N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D2005N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6271							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ACTGTAGAATCAGGTATGGCT	0.348													14	44					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179592958	179592958	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179592958G>A	uc010zfg.1	-	64	16085	c.15861C>T	c.(15859-15861)TGC>TGT	p.C5287C	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.C1948C	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	6214							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATCTCTCATGGCACACAAGTC	0.393													5	23					0	0	0.000602	0	0
TTN	7273	broad.mit.edu	37	2	179594940	179594940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179594940C>T	uc010zfg.1	-	59	14679	c.14455G>A	c.(14455-14457)GAT>AAT	p.D4819N	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.D1480N	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	5746							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAGGTGTCATCCTTCCAAACT	0.468													12	19					0	0	0.004990	0	0
TTN	7273	broad.mit.edu	37	2	179604360	179604360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179604360C>T	uc010zfh.1	-	46	13311	c.13087G>A	c.(13087-13089)GAG>AAG	p.E4363K	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Missense_Mutation_p.E4296K|TTN_uc010zfj.1_Missense_Mutation_p.E4171K|TTN_uc002umz.1_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity	p.A4363A(1)		ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAACTGACCTCTTCAGTTGAG	0.383													14	55					0	0	0.002450	0	0
TTN	7273	broad.mit.edu	37	2	179621069	179621069	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179621069C>T	uc010zfh.1	-	44	10845	c.10621G>A	c.(10621-10623)GGA>AGA	p.G3541R	TTN_uc010zfg.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133437	NP_597681	Q8WZ42	TITIN_HUMAN	titin isoform novex-2	3555							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGAATATTTCCATTTTGTGAT	0.398													20	58					0	0	0.007413	0	0
TTN	7273	broad.mit.edu	37	2	179623863	179623863	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179623863A>C	uc010zfg.1	-	44	10375	c.10151T>G	c.(10150-10152)ATC>AGC	p.I3384S	TTN_uc010zfh.1_Missense_Mutation_p.I3338S|TTN_uc010zfi.1_Missense_Mutation_p.I3338S|TTN_uc010zfj.1_Missense_Mutation_p.I3338S|TTN_uc002umz.1_Missense_Mutation_p.I45S|TTN_uc002unb.2_Missense_Mutation_p.I3384S	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGATGGCTTGATTTTCTTGTC	0.368													31	20					0	0	0.002445	0	0
TTN	7273	broad.mit.edu	37	2	179647683	179647683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:179647683C>T	uc010zfg.1	-	18	3174	c.2950G>A	c.(2950-2952)GAA>AAA	p.E984K	TTN_uc010zfh.1_Missense_Mutation_p.E938K|TTN_uc010zfi.1_Missense_Mutation_p.E938K|TTN_uc010zfj.1_Missense_Mutation_p.E938K|TTN_uc002unb.2_Missense_Mutation_p.E984K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	984							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGGAACTTTCGATTTGGTAG	0.478													9	32					0	0	0.008291	0	0
DNAJC10	54431	broad.mit.edu	37	2	183623904	183623904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:183623904C>T	uc002uow.1	+	21	2430	c.2015C>T	c.(2014-2016)TCC>TTC	p.S672F	DNAJC10_uc002uox.1_RNA|DNAJC10_uc002uoy.1_RNA|DNAJC10_uc002uoz.1_Missense_Mutation_p.S626F|DNAJC10_uc010fro.1_RNA	NM_018981	NP_061854	Q8IXB1	DJC10_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 10	672	Thioredoxin 4.				apoptosis in response to endoplasmic reticulum stress|cell redox homeostasis|ER-associated protein catabolic process|glycerol ether metabolic process|negative regulation of protein phosphorylation|protein folding|response to endoplasmic reticulum stress	endoplasmic reticulum chaperone complex|endoplasmic reticulum lumen|extracellular region	ATPase activator activity|ATPase binding|chaperone binding|electron carrier activity|heat shock protein binding|misfolded protein binding|protein disulfide oxidoreductase activity|unfolded protein binding			ovary(1)|large_intestine(1)|breast(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.0942)|Epithelial(96;0.209)			CCTCAAGTATCCACAGATCTA	0.328													10	28					0	0	0.006214	0	0
DUSP19	142679	broad.mit.edu	37	2	183960158	183960158	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:183960158G>A	uc002upd.2	+	4	802	c.427_splice	c.e4-1	p.D143_splice	DUSP19_uc010frp.2_Splice_Site_p.D92_splice|DUSP19_uc010zfr.1_Splice_Site|DUSP19_uc002upe.2_Splice_Site_p.K103_splice	NM_080876	NP_543152	Q8WTR2	DUS19_HUMAN	dual specificity phosphatase 19 isoform 1						JNK cascade|negative regulation of JNK cascade|negative regulation of JUN kinase activity|positive regulation of JNK cascade|positive regulation of JUN kinase activity	cytoplasm	JUN kinase phosphatase activity|MAP-kinase scaffold activity|mitogen-activated protein kinase kinase kinase binding|protein kinase activator activity|protein kinase inhibitor activity|protein tyrosine phosphatase activity			ovary(4)|pancreas(1)	5						TTTTTTTGTAGGATGGAGTGG	0.318													44	27					0	0	0.002852	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187692922	187692922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:187692922C>T	uc002upu.1	-	9	1731	c.1691G>A	c.(1690-1692)AGA>AAA	p.R564K		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	564					apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			GTTGTCCTCTCTTATTTTAGT	0.378													13	22					0	0	0.001855	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187698678	187698678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:187698678G>A	uc002upu.1	-	6	863	c.823C>T	c.(823-825)CGT>TGT	p.R275C		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	275	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			TGTACCTCACGAAATGTAAAC	0.363													9	21					0	0	0.006214	0	0
ZSWIM2	151112	broad.mit.edu	37	2	187702047	187702047	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:187702047C>T	uc002upu.1	-	5	769	c.729G>A	c.(727-729)GAG>GAA	p.E243E		NM_182521	NP_872327	Q8NEG5	ZSWM2_HUMAN	zinc finger, SWIM domain containing 2	243	ZZ-type.				apoptosis		zinc ion binding			ovary(2)|skin(1)	3			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.164)			AACACTTCCCCTCAATTGGAA	0.358													15	37					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	2	190788554	190788554	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:190788554G>A	uc002uro.2	+	1	636	c.493G>A	c.(493-495)GGA>AGA	p.G165R						SubName: Full=cDNA FLJ54127, highly similar to Heterogeneous nuclear ribonucleoproteins C;																		TTCTAAGAGTGGACAGCGGGG	0.483													44	92					0	0	0.003610	0	0
STAT4	6775	broad.mit.edu	37	2	191897874	191897874	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:191897874C>T	uc002usm.1	-	21	2108	c.1854G>A	c.(1852-1854)GGG>GGA	p.G618G	STAT4_uc002usn.1_Silent_p.G618G|STAT4_uc010zgk.1_Silent_p.G463G|STAT4_uc002uso.2_Silent_p.G618G	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	618	SH2.				JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			ATCTCACTTCCCCTTGAAAAA	0.443													7	15					0	0	0.003080	0	0
HECW2	57520	broad.mit.edu	37	2	197185126	197185126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:197185126G>A	uc002utm.1	-	8	1105	c.922C>T	c.(922-924)CCA>TCA	p.P308S	HECW2_uc002utl.1_Intron	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	308					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						TGGTCAGCTGGGAGCCTTCTG	0.453													11	5					0	0	0.001368	0	0
GTF3C3	9330	broad.mit.edu	37	2	197650231	197650231	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:197650231G>A	uc002uts.2	-	7	1065	c.975C>T	c.(973-975)TCC>TCT	p.S325S	GTF3C3_uc010zgu.1_Silent_p.S325S|GTF3C3_uc002utu.2_Silent_p.S325S|GTF3C3_uc002utt.3_5'UTR	NM_012086	NP_036218	Q9Y5Q9	TF3C3_HUMAN	general transcription factor IIIC, polypeptide	325						transcription factor TFIIIC complex	DNA binding|protein binding			ovary(3)|breast(3)|pancreas(1)	7						CATCTTCCATGGAGACTAGGC	0.348													21	14					0	0	0.001523	0	0
AOX1	316	broad.mit.edu	37	2	201480694	201480694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:201480694G>A	uc002uvx.2	+	16	1713	c.1612G>A	c.(1612-1614)GAT>AAT	p.D538N	AOX1_uc010zhf.1_Missense_Mutation_p.D94N|AOX1_uc010fsu.2_5'UTR	NM_001159	NP_001150	Q06278	ADO_HUMAN	aldehyde oxidase 1	538					inflammatory response|reactive oxygen species metabolic process	cytoplasm	2 iron, 2 sulfur cluster binding|aldehyde oxidase activity|flavin adenine dinucleotide binding|iron ion binding|NAD binding|xanthine dehydrogenase activity			ovary(4)|pancreas(1)|skin(1)	6					Brimonidine(DB00484)|Chlorpromazine(DB00477)|Famciclovir(DB00426)|Menadione(DB00170)|Methotrexate(DB00563)|NADH(DB00157)|Palonosetron(DB00377)|Penciclovir(DB00299)|Raloxifene(DB00481)|Zaleplon(DB00962)|Zonisamide(DB00909)	TACTTTTCAGGATCCAGTTCA	0.398													9	23					0	0	0.000978	0	0
BZW1	9689	broad.mit.edu	37	2	201681928	201681928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:201681928C>T	uc010zhg.1	+	6	650	c.598C>T	c.(598-600)CTT>TTT	p.L200F	BZW1_uc002uwc.2_Missense_Mutation_p.L168F|BZW1_uc010zhh.1_Missense_Mutation_p.L168F	NM_014670	NP_055485	Q7L1Q6	BZW1_HUMAN	basic leucine zipper and W2 domains 1	168					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm	protein binding				0						TGCATCCATTCTTAATAGCCT	0.413													12	46					0	0	0.001855	0	0
CASP10	843	broad.mit.edu	37	2	202073988	202073988	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:202073988C>T	uc002uxl.1	+	9	1536	c.1118C>T	c.(1117-1119)CCC>CTC	p.P373L	CASP10_uc002uxj.1_Missense_Mutation_p.P373L|CASP10_uc002uxk.1_Missense_Mutation_p.P330L|CASP10_uc010fta.1_Missense_Mutation_p.P306L|CASP10_uc002uxm.1_Missense_Mutation_p.P330L|CASP10_uc010ftb.1_RNA	NM_032974	NP_116756	Q92851	CASPA_HUMAN	caspase 10 isoform b preproprotein	373					apoptosis|induction of apoptosis by extracellular signals|proteolysis	cytosol|plasma membrane	cysteine-type endopeptidase activity|identical protein binding|protein binding			skin(3)|ovary(1)|pancreas(1)|breast(1)	6						GCCCTCATTCCCATTCGGGAG	0.517													10	30					0	0	0.000978	0	0
ICA1L	130026	broad.mit.edu	37	2	203680689	203680689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:203680689G>A	uc002uzh.1	-	8	892	c.728C>T	c.(727-729)TCC>TTC	p.S243F	ICA1L_uc002uzi.1_Missense_Mutation_p.S243F	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	243	AH.										0						ATGAATTTGGGACATCATTCG	0.388													138	103					0	0	0.003610	0	0
ICA1L	130026	broad.mit.edu	37	2	203693696	203693696	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:203693696G>A	uc002uzh.1	-	3	201	c.37C>T	c.(37-39)CAG>TAG	p.Q13*	ICA1L_uc002uzi.1_Nonsense_Mutation_p.Q13*|ICA1L_uc002uzj.2_Nonsense_Mutation_p.Q13*|ICA1L_uc002uzk.1_Nonsense_Mutation_p.Q13*	NM_138468	NP_612477	Q8NDH6	ICA1L_HUMAN	islet cell autoantigen 1,69kDa-like isoform 1	13											0						ACTACTGACTGATTATCTTCT	0.348													220	124					0	0	0.003610	0	0
ZDBF2	57683	broad.mit.edu	37	2	207170117	207170117	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:207170117C>T	uc002vbp.2	+	5	1115	c.865C>T	c.(865-867)CAT>TAT	p.H289Y		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	289							nucleic acid binding|zinc ion binding			ovary(3)	3						CTTGAAATTCCATGAACGCAT	0.358													20	7					0	0	0.001523	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171931	207171931	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:207171931G>A	uc002vbp.2	+	5	2929	c.2679G>A	c.(2677-2679)AAG>AAA	p.K893K		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	893							nucleic acid binding|zinc ion binding			ovary(3)	3						CTGTTAAAAAGCTAAATCCTC	0.353													26	14					0	0	0.003330	0	0
DYTN	391475	broad.mit.edu	37	2	207530685	207530685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:207530685C>T	uc002vbr.1	-	10	1166	c.1049G>A	c.(1048-1050)AGA>AAA	p.R350K		NM_001093730	NP_001087199	A2CJ06	DYTN_HUMAN	dystrotelin	350	Potential.					plasma membrane	zinc ion binding			ovary(1)|central_nervous_system(1)	2				LUSC - Lung squamous cell carcinoma(261;0.082)|Epithelial(149;0.129)|Lung(261;0.153)		TCGACAAATTCTTTCTTCCTG	0.383													13	39					0	0	0.001368	0	0
IKZF2	22807	broad.mit.edu	37	2	213872409	213872409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:213872409G>A	uc002vem.2	-	8	1425	c.1256C>T	c.(1255-1257)TCC>TTC	p.S419F	IKZF2_uc010fuu.2_Missense_Mutation_p.S274F|IKZF2_uc002vej.2_Missense_Mutation_p.S366F|IKZF2_uc002vek.2_RNA|IKZF2_uc010fuv.2_Missense_Mutation_p.S345F|IKZF2_uc002vel.2_Missense_Mutation_p.S340F|IKZF2_uc010fuw.2_Missense_Mutation_p.S193F|IKZF2_uc010fux.2_Missense_Mutation_p.S193F|IKZF2_uc010fuy.2_Missense_Mutation_p.S347F|IKZF2_uc002ven.2_Missense_Mutation_p.S393F|IKZF2_uc002vei.2_Missense_Mutation_p.S197F	NM_016260	NP_057344	Q9UKS7	IKZF2_HUMAN	helios isoform 1	419					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Esophageal squamous(248;0.0559)|Renal(323;0.218)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;2.97e-07)|all cancers(144;1.53e-05)|LUSC - Lung squamous cell carcinoma(224;0.00599)|Lung(261;0.00792)		TCCTTGGTAGGACTGGTGGTC	0.517													45	95					0	0	0.003610	0	0
ABCA12	26154	broad.mit.edu	37	2	215840723	215840723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:215840723C>T	uc002vew.2	-	34	5387	c.5167G>A	c.(5167-5169)GGA>AGA	p.G1723R	ABCA12_uc002vev.2_Missense_Mutation_p.G1405R|ABCA12_uc010zjn.1_Missense_Mutation_p.G650R	NM_173076	NP_775099	Q86UK0	ABCAC_HUMAN	ATP-binding cassette, sub-family A, member 12	1723					cellular homeostasis|lipid transport	integral to membrane	ATP binding|ATPase activity			ovary(6)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	11		Renal(323;0.127)		Epithelial(149;1.01e-05)|all cancers(144;0.00112)|LUSC - Lung squamous cell carcinoma(224;0.00829)|Lung(261;0.011)		AGCAACAGTCCAAAGCCATCC	0.433													16	16					0	0	0.004007	0	0
VIL1	7429	broad.mit.edu	37	2	219313997	219313997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:219313997G>A	uc002via.2	+	20	2487	c.2422G>A	c.(2422-2424)GCC>ACC	p.A808T	VIL1_uc010zke.1_Missense_Mutation_p.A497T|VIL1_uc002vib.2_Missense_Mutation_p.A808T	NM_007127	NP_009058	P09327	VILI_HUMAN	villin 1	808	Headpiece.|HP.				actin filament capping|actin filament depolymerization|actin filament polymerization|actin filament severing|apoptosis|cellular response to epidermal growth factor stimulus|cytoplasmic actin-based contraction involved in cell motility|epidermal growth factor receptor signaling pathway|positive regulation of actin filament bundle assembly|positive regulation of epithelial cell migration|regulation of actin nucleation|regulation of cell shape|regulation of lamellipodium morphogenesis|regulation of wound healing|response to bacterium	actin filament bundle|cytoplasm|filopodium tip|intracellular membrane-bounded organelle|lamellipodium|microvillus|ruffle	actin filament binding|calcium ion binding|caspase inhibitor activity|lysophosphatidic acid binding|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity			ovary(1)	1		Renal(207;0.0474)		Epithelial(149;6.88e-07)|all cancers(144;0.00013)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GACTCCAGCTGCCTTCTCTGC	0.478													97	67					0	0	0.003610	0	0
STK36	27148	broad.mit.edu	37	2	219540913	219540914	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:219540913_219540914CC>TT	uc002viu.2	+	6	862_863	c.596_597CC>TT	c.(595-597)CCC>CTT	p.P199L	STK36_uc002viv.2_Missense_Mutation_p.P199L	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	199	Protein kinase.				cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GGCACCCCTCCCTTCTATGCTA	0.52													16	43					0	0	0.004672	0	0
STK36	27148	broad.mit.edu	37	2	219564066	219564066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:219564066C>T	uc002viu.2	+	26	4065	c.3799C>T	c.(3799-3801)CAT>TAT	p.H1267Y	STK36_uc002viv.2_Missense_Mutation_p.H1246Y|STK36_uc002viw.2_Missense_Mutation_p.H445Y|STK36_uc002vix.2_Missense_Mutation_p.H312Y	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	1267					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding	p.H1267R(1)		ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GCCTGGCATCCATCAGGTATA	0.527													15	33					0	0	0.004007	0	0
CCDC108	255101	broad.mit.edu	37	2	219888853	219888853	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:219888853C>T	uc002vjl.1	-	15	2563	c.2479G>A	c.(2479-2481)GGC>AGC	p.G827S		NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	827						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GCCACAAGGCCCGAAGTGGGC	0.607													18	6					0	0	0.007413	0	0
CCDC108	255101	broad.mit.edu	37	2	219896369	219896369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:219896369C>T	uc002vjl.1	-	7	741	c.657G>A	c.(655-657)ATG>ATA	p.M219I	CCDC108_uc010fwa.1_5'Flank|CCDC108_uc010zkp.1_Missense_Mutation_p.M208I|CCDC108_uc010zkq.1_Missense_Mutation_p.M154I	NM_194302	NP_919278	Q6ZU64	CC108_HUMAN	coiled-coil domain containing 108 isoform 1	219						integral to membrane	structural molecule activity			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Renal(207;0.0915)		Epithelial(149;1.12e-06)|all cancers(144;0.000196)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		ACAGCTGGTCCATGTACTCCT	0.637													9	23					0	0	0.006214	0	0
SPEG	10290	broad.mit.edu	37	2	220338472	220338472	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:220338472G>A	uc010fwg.2	+	18	4294	c.4294G>A	c.(4294-4296)GCA>ACA	p.A1432T		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1432	Ig-like 7.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CCTCCTAGAGGCACGGGCCGG	0.672													19	48					0	0	0.007413	0	0
SPEG	10290	broad.mit.edu	37	2	220354500	220354500	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:220354500C>T	uc010fwg.2	+	36	8760	c.8760C>T	c.(8758-8760)CCC>CCT	p.P2920P		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	2920	Pro-rich.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CCCCTGAGCCCCCTCCTGAGC	0.627													10	17					0	0	0.006214	0	0
FARSB	10056	broad.mit.edu	37	2	223484389	223484389	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:223484389C>T	uc002vne.1	-	14	1354	c.1319G>A	c.(1318-1320)AGT>AAT	p.S440N	FARSB_uc010zlq.1_Missense_Mutation_p.S460N|FARSB_uc002vnf.1_Missense_Mutation_p.S341N	NM_005687	NP_005678	Q9NSD9	SYFB_HUMAN	phenylalanyl-tRNA synthetase, beta subunit	440					phenylalanyl-tRNA aminoacylation	cytosol|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|RNA binding			ovary(1)	1		Renal(207;0.0183)		Epithelial(121;3.47e-10)|all cancers(144;1.86e-07)|LUSC - Lung squamous cell carcinoma(224;0.00871)|Lung(261;0.011)	L-Phenylalanine(DB00120)	TTTAGGATTACTTATGTGGAC	0.363													5	25					0	0	0.001984	0	0
SERPINE2	5270	broad.mit.edu	37	2	224856534	224856534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:224856534G>A	uc002vnu.2	-	4	914	c.671C>T	c.(670-672)TCC>TTC	p.S224F	SERPINE2_uc002vnt.2_Missense_Mutation_p.S224F|SERPINE2_uc010zlr.1_Missense_Mutation_p.S236F|SERPINE2_uc002vnv.2_Missense_Mutation_p.S224F	NM_006216	NP_006207	P07093	GDN_HUMAN	plasminogen activator inhibitor type 1, member 2	224					negative regulation of blood coagulation|negative regulation of plasminogen activation|negative regulation of platelet aggregation|positive regulation of astrocyte differentiation|regulation of cell migration	cytosol|extracellular matrix|extracellular space|extrinsic to external side of plasma membrane|neuromuscular junction|platelet alpha granule	heparin binding|receptor binding|serine-type endopeptidase inhibitor activity			breast(2)|ovary(1)|central_nervous_system(1)	4		Renal(207;0.025)|all_lung(227;0.0586)|Lung NSC(271;0.0682)|all_hematologic(139;0.0797)		Epithelial(121;5.68e-10)|all cancers(144;1.9e-07)|Lung(261;0.0088)|LUSC - Lung squamous cell carcinoma(224;0.00902)		CCGGAACACGGAGAGCTGGGC	0.527													7	15					0	0	0.004482	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447205	226447205	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:226447205C>T	uc002voe.2	+	4	1247	c.1072C>T	c.(1072-1074)CTG>TTG	p.L358L	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.L128L	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	358	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		GCTTACCCCTCTGGAGGTCAC	0.657													5	9					0	0	0.000602	0	0
KIAA1486	57624	broad.mit.edu	37	2	226447216	226447216	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:226447216G>A	uc002voe.2	+	4	1258	c.1083G>A	c.(1081-1083)ACG>ACA	p.T361T	KIAA1486_uc010fxa.1_Intron|KIAA1486_uc002vof.1_Silent_p.T131T	NM_020864	NP_065915	Q9P242	K1486_HUMAN	hypothetical protein LOC57624	361	Pro-rich.									ovary(2)|central_nervous_system(1)	3		Renal(207;0.0112)|all_lung(227;0.0477)|Lung NSC(271;0.0644)|all_hematologic(139;0.101)|Esophageal squamous(248;0.129)		Epithelial(121;6.73e-10)|all cancers(144;4.32e-07)|Lung(261;0.0161)|LUSC - Lung squamous cell carcinoma(224;0.0223)		TGGAGGTCACGAAGCTTCCCG	0.642													10	5					0	0	0.008291	0	0
IRS1	3667	broad.mit.edu	37	2	227662747	227662747	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:227662747G>A	uc002voh.3	-	1	760	c.708C>T	c.(706-708)TTC>TTT	p.F236F		NM_005544	NP_005535	P35568	IRS1_HUMAN	insulin receptor substrate 1	236	IRS-type PTB.				fibroblast growth factor receptor signaling pathway|glucose homeostasis|insulin receptor signaling pathway|negative regulation of insulin receptor signaling pathway|negative regulation of insulin secretion|nerve growth factor receptor signaling pathway|phosphatidylinositol 3-kinase cascade|phosphatidylinositol-mediated signaling|positive regulation of fatty acid beta-oxidation|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of insulin receptor signaling pathway|positive regulation of phosphatidylinositol 3-kinase activity	caveola|cytosol|insulin receptor complex|microsome|nucleus	insulin receptor binding|insulin-like growth factor receptor binding|phosphatidylinositol 3-kinase binding|protein kinase C binding|SH2 domain binding|transmembrane receptor protein tyrosine kinase adaptor activity			lung(5)|central_nervous_system(4)|ovary(2)|pancreas(1)	12		Renal(207;0.023)|all_lung(227;0.0994)|all_hematologic(139;0.118)|Esophageal squamous(248;0.23)		Epithelial(121;3.03e-11)|all cancers(144;2.42e-08)|Lung(261;0.00712)|LUSC - Lung squamous cell carcinoma(224;0.0137)		CCTGCATCCAGAACTCCCCGG	0.612											OREG0015248	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	22	18					0	0	0.003954	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882320	228882320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:228882320C>T	uc002vpq.2	-	7	3297	c.3250G>A	c.(3250-3252)GAA>AAA	p.E1084K	SPHKAP_uc002vpp.2_Missense_Mutation_p.E1084K|SPHKAP_uc010zlx.1_Missense_Mutation_p.E1084K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1084						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGAATGCTTTCGCAGCTGGAG	0.622													29	10					0	0	0.007291	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882549	228882549	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:228882549C>T	uc002vpq.2	-	7	3068	c.3021G>A	c.(3019-3021)ACG>ACA	p.T1007T	SPHKAP_uc002vpp.2_Silent_p.T1007T|SPHKAP_uc010zlx.1_Silent_p.T1007T	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	1007						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGTGCTCGTCCGTCTTCCTCT	0.517													31	18					0	0	0.003271	0	0
SPHKAP	80309	broad.mit.edu	37	2	228996724	228996724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:228996724G>A	uc002vpq.2	-	2	157	c.110C>T	c.(109-111)CCG>CTG	p.P37L	SPHKAP_uc002vpp.2_Missense_Mutation_p.P37L|SPHKAP_uc010zlx.1_Missense_Mutation_p.P37L	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	37						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGAGTTCCCCGGGCCGCTTCC	0.468													16	66					0	0	0.004007	0	0
DNER	92737	broad.mit.edu	37	2	230231734	230231734	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:230231734T>C	uc002vpv.2	-	12	2104	c.1957A>G	c.(1957-1959)ATG>GTG	p.M653V		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	653	Helical; (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		ATGATCAGCATAAGGATGAAG	0.562													5	14					0	0	0.000602	0	0
DNER	92737	broad.mit.edu	37	2	230282864	230282864	+	Silent	SNP	G	A	A	rs138648634		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:230282864G>A	uc002vpv.2	-	9	1716	c.1569C>T	c.(1567-1569)CTC>CTT	p.L523L		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	523	EGF-like 8; calcium-binding (Potential).|Extracellular (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		AGCCATTAACGAGGTCCCTGC	0.522													15	32					0	0	0.004007	0	0
GIGYF2	26058	broad.mit.edu	37	2	233660862	233660862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:233660862G>A	uc002vti.3	+	16	1907	c.1570G>A	c.(1570-1572)GTG>ATG	p.V524M	GIGYF2_uc010zmj.1_Missense_Mutation_p.V524M|GIGYF2_uc002vtg.2_Missense_Mutation_p.V518M|GIGYF2_uc002vtj.3_Missense_Mutation_p.V545M|GIGYF2_uc002vtk.3_Missense_Mutation_p.V524M|GIGYF2_uc002vth.3_Missense_Mutation_p.V518M|GIGYF2_uc010zmk.1_RNA|GIGYF2_uc010zml.1_Missense_Mutation_p.V355M	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	524					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGCTAAAGGAGTGTCGATTCC	0.408													10	44					0	0	0.000978	0	0
INPP5D	3635	broad.mit.edu	37	2	233990557	233990557	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:233990557G>C	uc010zmo.1	+	4	605	c.452G>C	c.(451-453)CGA>CCA	p.R151P	INPP5D_uc010zmp.1_Missense_Mutation_p.R150P	NM_001017915	NP_001017915	Q92835	SHIP1_HUMAN	SH2 containing inositol phosphatase isoform a	151					apoptosis|blood coagulation|leukocyte migration|T cell receptor signaling pathway	cytosol	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-3,4,5-trisphosphate 3-phosphatase activity|SH3 domain binding			ovary(1)|central_nervous_system(1)	2		Breast(86;0.0013)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0273)|Acute lymphoblastic leukemia(138;0.0328)|Lung NSC(271;0.0843)		Epithelial(121;1.16e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000479)|LUSC - Lung squamous cell carcinoma(224;0.00655)|Lung(119;0.00802)|GBM - Glioblastoma multiforme(43;0.0185)		GAGAATCCCCGAGCGACCGAG	0.602													8	7					0	0	0.003080	0	0
UGT1A9	54600	broad.mit.edu	37	2	234581143	234581143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:234581143C>T	uc002vus.2	+	1	600	c.563C>T	c.(562-564)TCC>TTC	p.S188F	UGT1A8_uc010zmv.1_Intron|UGT1A8_uc002vup.2_Intron|UGT1A10_uc002vuq.3_Intron|UGT1A10_uc002vur.2_Intron|UGT1A9_uc010zmw.1_Missense_Mutation_p.S188F	NM_021027	NP_066307	O60656	UD19_HUMAN	UDP glycosyltransferase 1 family, polypeptide A9	188					drug metabolic process|flavone metabolic process|negative regulation of fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	enzyme binding|enzyme inhibitor activity|glucuronosyltransferase activity|protein heterodimerization activity|protein homodimerization activity|retinoic acid binding			ovary(3)|breast(1)|skin(1)	5		Breast(86;0.000766)|all_lung(227;0.00269)|Renal(207;0.00339)|all_hematologic(139;0.0116)|Acute lymphoblastic leukemia(138;0.0331)|Lung NSC(271;0.0459)|Lung SC(224;0.128)		Epithelial(121;1.26e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000436)|Lung(119;0.00347)|LUSC - Lung squamous cell carcinoma(224;0.00757)	Entacapone(DB00494)|Etodolac(DB00749)|Indomethacin(DB00328)|Irinotecan(DB00762)|Mycophenolic acid(DB01024)|Oxyphenonium(DB00219)|Propofol(DB00818)|Sorafenib(DB00398)	GCTCCTCTTTCCTATGTCCCC	0.473													82	54					0	0	0.003610	0	0
IQCA1	79781	broad.mit.edu	37	2	237308122	237308122	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:237308122C>T	uc002vvz.1	-	9	1326	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	IQCA1_uc002vwb.2_Missense_Mutation_p.E389K|IQCA1_uc002vwa.1_RNA|IQCA1_uc010zni.1_Missense_Mutation_p.E341K	NM_024726	NP_079002	Q86XH1	IQCA1_HUMAN	IQ motif containing with AAA domain 1	382	Lys-rich.						ATP binding			ovary(1)	1						TTCCATTTTTCGTCTTCTTCC	0.458													12	49					0	0	0.000978	0	0
COL6A3	1293	broad.mit.edu	37	2	238277279	238277279	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:238277279G>A	uc002vwl.2	-	10	5112	c.4827C>T	c.(4825-4827)ATC>ATT	p.I1609I	COL6A3_uc002vwo.2_Silent_p.I1403I|COL6A3_uc010znj.1_Silent_p.I1002I	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	1609	VWFA 8.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		ACGAGTTCATGATTCTTTCTT	0.552													20	39					0	0	0.007413	0	0
ANKMY1	51281	broad.mit.edu	37	2	241463580	241463580	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:241463580G>A	uc002vyz.1	-	7	1516	c.1287C>T	c.(1285-1287)AGC>AGT	p.S429S	ANKMY1_uc002vza.1_Silent_p.S288S|ANKMY1_uc010fzd.1_Silent_p.S518S|ANKMY1_uc002vzb.1_Intron|ANKMY1_uc002vzc.1_Silent_p.S288S|ANKMY1_uc002vzd.1_Silent_p.S288S|ANKMY1_uc010fze.1_Silent_p.S98S|ANKMY1_uc002vze.2_Silent_p.S190S	NM_016552	NP_057636	Q9P2S6	ANKY1_HUMAN	ankyrin repeat and MYND domain containing 1	429							zinc ion binding			central_nervous_system(1)	1		all_epithelial(40;2.79e-15)|Breast(86;2.41e-05)|Renal(207;0.00183)|Ovarian(221;0.0228)|all_lung(227;0.0335)|Lung NSC(271;0.106)|all_hematologic(139;0.158)|Melanoma(123;0.16)|Hepatocellular(293;0.244)		Epithelial(32;1.03e-30)|all cancers(36;4.78e-28)|OV - Ovarian serous cystadenocarcinoma(60;1.45e-14)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;7.8e-06)|Lung(119;0.00271)|LUSC - Lung squamous cell carcinoma(224;0.01)|Colorectal(34;0.0101)|COAD - Colon adenocarcinoma(134;0.0476)		CCTTCAGAGAGCTGCTCCTGT	0.652													16	13					0	0	0.004007	0	0
ANGPT4	51378	broad.mit.edu	37	20	896618	896618	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:896618C>T	uc002wei.2	-	1	343	c.240G>A	c.(238-240)GGG>GGA	p.G80G	ANGPT4_uc010zpn.1_Silent_p.G74G	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	80					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						TGGGCAACTTCCCCAGGTGCA	0.622													21	24					0	0	0.002299	0	0
SIRPD	128646	broad.mit.edu	37	20	1532558	1532558	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:1532558C>T	uc002wfi.2	-	2	244	c.200G>A	c.(199-201)GGA>GAA	p.G67E		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	67	Ig-like V-type.					extracellular region				ovary(1)|kidney(1)|skin(1)	3						TGGCCCTGTTCCCTTGAACCA	0.448													26	34					0	0	0.003330	0	0
ADAM33	80332	broad.mit.edu	37	20	3655171	3655171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:3655171G>A	uc002wit.2	-	6	667	c.580C>T	c.(580-582)CCT>TCT	p.P194S	ADAM33_uc002wir.1_Missense_Mutation_p.P194S|ADAM33_uc002wis.2_5'Flank|ADAM33_uc002wiu.2_Missense_Mutation_p.P194S|ADAM33_uc002wiw.1_Intron|ADAM33_uc010gba.1_Intron|ADAM33_uc010gbb.1_Intron|ADAM33_uc002wix.1_Intron|ADAM33_uc010zqg.1_Missense_Mutation_p.P206S|ADAM33_uc010zqh.1_Missense_Mutation_p.P194S	NM_025220	NP_079496	Q9BZ11	ADA33_HUMAN	ADAM metallopeptidase domain 33 isoform alpha	194	Extracellular (Potential).				proteolysis	integral to membrane	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|ovary(1)|skin(1)	4						GGACCACCAGGAAGGCTGGTC	0.572													13	30					0	0	0.004007	0	0
SIGLEC1	6614	broad.mit.edu	37	20	3677314	3677315	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:3677314_3677315GG>AC	uc002wja.2	-	10	2601_2602	c.2601_2602CC>GT	c.(2599-2604)GGCCTT>GGGTTT	p.L868F	SIGLEC1_uc002wiz.3_Missense_Mutation_p.L868F	NM_023068	NP_075556	Q9BZZ2	SN_HUMAN	sialoadhesin precursor	868	Ig-like C2-type 8.|Extracellular (Potential).				cell-cell adhesion|cell-matrix adhesion|endocytosis|inflammatory response	extracellular region|integral to membrane|plasma membrane	sugar binding			pancreas(4)|ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	10						GAGTCCCCAAGGCCCAGTTCTC	0.579													13	32					0	0	0.004672	0	0
HSPA12B	116835	broad.mit.edu	37	20	3725567	3725568	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:3725567_3725568CC>TT	uc002wjd.2	+	5	388_389	c.285_286CC>TT	c.(283-288)GACCCG>GATTCG	p.P96S	HSPA12B_uc010zqi.1_Missense_Mutation_p.P96S|HSPA12B_uc002wje.2_Missense_Mutation_p.P9S|HSPA12B_uc010zqj.1_5'UTR	NM_052970	NP_443202	Q96MM6	HS12B_HUMAN	heat shock 70kD protein 12B	96							ATP binding				0						AGGGCGGAGACCCGGGCGTGGC	0.545													13	28					0	0	0.004672	0	0
PLCB1	23236	broad.mit.edu	37	20	8678363	8678363	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:8678363G>A	uc002wnb.2	+	11	1103	c.1100G>A	c.(1099-1101)GGA>GAA	p.G367E	PLCB1_uc010zrb.1_Missense_Mutation_p.G266E|PLCB1_uc002wna.2_Missense_Mutation_p.G367E|PLCB1_uc002wnc.1_Missense_Mutation_p.G266E	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	367	PI-PLC X-box.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGCTGGAAGGGACGGACTGCA	0.488													42	46					0	0	0.002222	0	0
PLCB1	23236	broad.mit.edu	37	20	8769119	8769119	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:8769119C>T	uc002wnb.2	+	28	3138	c.3135C>T	c.(3133-3135)GTC>GTT	p.V1045V	PLCB1_uc010zrb.1_Silent_p.V944V|PLCB1_uc002wna.2_Silent_p.V1045V|PLCB1_uc002wnc.1_Silent_p.V944V|PLCB1_uc002wnd.1_Silent_p.V622V	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	1045					activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						TGACGGATGTCGCAGAAGAGT	0.383													9	9					0	0	0.001368	0	0
PLCB4	5332	broad.mit.edu	37	20	9364916	9364916	+	Missense_Mutation	SNP	C	T	T	rs78074693		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:9364916C>T	uc002wnf.2	+	13	1058	c.922C>T	c.(922-924)CGT>TGT	p.R308C	PLCB4_uc010gbw.1_Missense_Mutation_p.R308C|PLCB4_uc010gbx.2_Missense_Mutation_p.R308C|PLCB4_uc002wne.2_Missense_Mutation_p.R308C|PLCB4_uc002wnh.2_Missense_Mutation_p.R155C	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	308					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CTTCCTAGATCGTTTAGAACT	0.443													29	41					0	0	0.001786	0	0
PLCB4	5332	broad.mit.edu	37	20	9365010	9365010	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:9365010G>A	uc002wnf.2	+	13	1152	c.1016G>A	c.(1015-1017)GGG>GAG	p.G339E	PLCB4_uc010gbw.1_Missense_Mutation_p.G339E|PLCB4_uc010gbx.2_Missense_Mutation_p.G339E|PLCB4_uc002wne.2_Missense_Mutation_p.G339E|PLCB4_uc002wnh.2_Missense_Mutation_p.G186E	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	339	PI-PLC X-box.				intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						CAGTTCGGCGGGAAGTCTTCG	0.453													17	48					0	0	0.008871	0	0
PAK7	57144	broad.mit.edu	37	20	9538296	9538296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:9538296C>T	uc002wnl.2	-	8	2247	c.1702G>A	c.(1702-1704)GAC>AAC	p.D568N	PAK7_uc002wnk.2_Missense_Mutation_p.D568N|PAK7_uc002wnj.2_Missense_Mutation_p.D568N|PAK7_uc010gby.1_Missense_Mutation_p.D568N	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	568	Protein kinase.	Proton acceptor (By similarity).					ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTTTTTATGTCCCTGTGAATC	0.458													32	25					0	0	0.002836	0	0
JAG1	182	broad.mit.edu	37	20	10630941	10630941	+	Silent	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:10630941A>G	uc002wnw.2	-	9	1704	c.1188T>C	c.(1186-1188)TTT>TTC	p.F396F	JAG1_uc010gcd.1_5'UTR	NM_000214	NP_000205	P78504	JAG1_HUMAN	jagged 1 precursor	396	Extracellular (Potential).|EGF-like 5; calcium-binding (Potential).				angiogenesis|cell communication|cell fate determination|endothelial cell differentiation|hemopoiesis|keratinocyte differentiation|myoblast differentiation|Notch receptor processing|Notch signaling pathway|regulation of cell migration|regulation of cell proliferation	extracellular region|integral to plasma membrane	calcium ion binding|growth factor activity|Notch binding|structural molecule activity			lung(3)|ovary(2)|central_nervous_system(2)|breast(1)|pancreas(1)	9						ACACACACTTAAATCCGTTAA	0.473									Alagille_Syndrome				12	15					0	0	0.002450	0	0
SPTLC3	55304	broad.mit.edu	37	20	13029765	13029765	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:13029765G>A	uc002wod.1	+	2	579	c.290G>A	c.(289-291)CGA>CAA	p.R97Q	SPTLC3_uc002woc.2_Missense_Mutation_p.R97K	NM_018327	NP_060797	Q9NUV7	SPTC3_HUMAN	serine palmitoyltransferase, long chain base	97					sphingoid biosynthetic process	integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups				0					Pyridoxal Phosphate(DB00114)	GCTGTGGAAAGAAAAGAACAA	0.428													11	28					0	0	0.000978	0	0
MACROD2	140733	broad.mit.edu	37	20	15210628	15210628	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:15210628A>T	uc002wou.2	+	6	725	c.461A>T	c.(460-462)AAT>ATT	p.N154I	MACROD2_uc002wot.2_Missense_Mutation_p.N154I|MACROD2_uc002woz.2_5'UTR	NM_080676	NP_542407	A1Z1Q3	MACD2_HUMAN	MACRO domain containing 2 isoform 1	154	Macro.										0		all_neural(2;0.0381)|Acute lymphoblastic leukemia(2;0.175)				GGCCATATTAATGGTTCCCAC	0.358													12	29					0	0	0.002450	0	0
DTD1	92675	broad.mit.edu	37	20	18724887	18724887	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:18724887G>A	uc002wrf.3	+	5	782	c.621G>A	c.(619-621)CGG>CGA	p.R207R		NM_080820	NP_543010	Q8TEA8	DTD1_HUMAN	D-tyrosyl-tRNA deacylase 1	207					D-amino acid catabolic process	cytoplasm	hydrolase activity, acting on ester bonds			ovary(2)	2						CCTCTGAACGGGAGCCGTAGC	0.542													6	20					0	0	0.003080	0	0
CD93	22918	broad.mit.edu	37	20	23065308	23065309	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:23065308_23065309CC>TT	uc002wsv.2	-	1	1669_1670	c.1521_1522GG>AA	c.(1519-1524)GAGGGC>GAAAGC	p.G508S		NM_012072	NP_036204	Q9NPY3	C1QR1_HUMAN	CD93 antigen precursor	508	Extracellular (Potential).				cell-cell adhesion|interspecies interaction between organisms|macrophage activation|phagocytosis	plasma membrane	calcium ion binding|complement component C1q binding|receptor activity|sugar binding			large_intestine(2)	2	Colorectal(13;0.0352)|Lung NSC(19;0.0542)|all_lung(19;0.118)					TTGGGGGTGCCCTCGGGGCCCC	0.644													23	22					0	0	0.004672	0	0
VSX1	30813	broad.mit.edu	37	20	25056959	25056959	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:25056959G>A	uc002wuf.2	-	5	1071	c.1036C>T	c.(1036-1038)CAA>TAA	p.Q346*	VSX1_uc002wue.2_Intron|VSX1_uc010gdd.1_Intron|VSX1_uc010gde.1_Intron|VSX1_uc010gdf.1_Intron	NM_014588	NP_055403	Q9NZR4	VSX1_HUMAN	visual system homeobox 1 isoform a	346					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GAGCCTCCTTGAGCACCAGCC	0.587													21	27					0	0	0.001882	0	0
ABHD12	26090	broad.mit.edu	37	20	25282881	25282881	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:25282881C>T	uc002wus.1	-	12	1269	c.1131G>A	c.(1129-1131)AAG>AAA	p.K377K	ABHD12_uc002wuq.2_Silent_p.K377K|ABHD12_uc002wur.2_Silent_p.K376K|ABHD12_uc002wut.1_Silent_p.K376K|ABHD12_uc002wuu.1_Silent_p.K157K	NM_001042472	NP_001035937	Q8N2K0	ABD12_HUMAN	abhydrolase domain containing 12 isoform a	377	Extracellular (Potential).					integral to membrane	acylglycerol lipase activity			skin(1)	1						GCTCAGGGCTCTTGTAAATGT	0.532													18	25					0	0	0.008871	0	0
SUN5	140732	broad.mit.edu	37	20	31573680	31573680	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:31573680G>A	uc002wyi.2	-	11	852	c.759C>T	c.(757-759)GCC>GCT	p.A253A		NM_080675	NP_542406	Q8TC36	SUN5_HUMAN	sperm associated antigen 4-like	253	SUN.				spermatogenesis					skin(1)	1						CACCCTCAAAGGCCCAGCAAT	0.547													16	12					0	0	0.004990	0	0
CDK5RAP1	51654	broad.mit.edu	37	20	31967344	31967344	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:31967344G>A	uc010gek.2	-	9	1196	c.1072C>T	c.(1072-1074)CTG>TTG	p.L358L	CDK5RAP1_uc002wyy.2_Silent_p.L254L|CDK5RAP1_uc002wyz.2_Silent_p.L344L|CDK5RAP1_uc002wza.2_Silent_p.L344L|CDK5RAP1_uc010gel.2_Silent_p.L253L|CDK5RAP1_uc010gem.2_Intron|CDK5RAP1_uc002wzc.1_Silent_p.L344L	NM_016408	NP_057492	Q96SZ6	CK5P1_HUMAN	CDK5 regulatory subunit associated protein 1	358					brain development|negative regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation|tRNA modification	cytoplasm	4 iron, 4 sulfur cluster binding|metal ion binding|neuronal Cdc2-like kinase binding|transferase activity			ovary(2)|skin(2)|lung(1)	5						ACCTGATCCAGAAGATGAGCA	0.493													16	28					0	0	0.004007	0	0
NCOA6	23054	broad.mit.edu	37	20	33329378	33329378	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:33329378T>C	uc002xav.2	-	12	7253	c.4682A>G	c.(4681-4683)CAT>CGT	p.H1561R	NCOA6_uc002xaw.2_Missense_Mutation_p.H1561R	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1561					brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						CAATTCGGGATGCACAAGGGA	0.473													33	85					0	0	0.003271	0	0
GSS	2937	broad.mit.edu	37	20	33517333	33517333	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:33517333T>A	uc002xbg.2	-	12	1252	c.1172A>T	c.(1171-1173)GAG>GTG	p.E391V	GSS_uc010zun.1_Missense_Mutation_p.E263V|GSS_uc010zuo.1_Missense_Mutation_p.E280V|GSS_uc010zup.1_Missense_Mutation_p.E322V|GSS_uc002xbh.2_RNA|GSS_uc010gez.1_Missense_Mutation_p.E121V	NM_000178	NP_000169	P48637	GSHB_HUMAN	glutathione synthetase	391					nervous system development|response to oxidative stress|xenobiotic metabolic process	cytosol	ATP binding|glutathione binding|glutathione synthase activity|magnesium ion binding|protein homodimerization activity			ovary(3)	3			BRCA - Breast invasive adenocarcinoma(18;0.035)		Glutathione(DB00143)|Glycine(DB00145)|L-Cysteine(DB00151)	GGAGGCCCTCTCCTCACTGTC	0.547													79	110					0	0	0.003610	0	0
FAM83C	128876	broad.mit.edu	37	20	33879806	33879806	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:33879806C>T	uc010zux.1	-	1	420	c.302G>A	c.(301-303)GGG>GAG	p.G101E	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	101										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			GCGGTCTGGCCCGGAGGCCTC	0.672													13	16					0	0	0.001368	0	0
CPNE1	8904	broad.mit.edu	37	20	34220719	34220719	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:34220719C>T	uc002xdf.2	-	4	490	c.127G>A	c.(127-129)GAG>AAG	p.E43K	CPNE1_uc002xdc.2_5'Flank|CPNE1_uc010zvj.1_Missense_Mutation_p.E48K|CPNE1_uc002xde.2_Missense_Mutation_p.E43K|CPNE1_uc002xdg.2_Missense_Mutation_p.E43K|CPNE1_uc010gfi.2_RNA|CPNE1_uc010gfj.2_RNA|CPNE1_uc002xdh.2_Missense_Mutation_p.E43K|CPNE1_uc002xdi.2_Missense_Mutation_p.E43K|CPNE1_uc002xdj.2_Missense_Mutation_p.E43K|CPNE1_uc002xdk.2_Missense_Mutation_p.E43K|CPNE1_uc002xdl.2_Missense_Mutation_p.E43K|CPNE1_uc002xdm.2_Missense_Mutation_p.E43K|CPNE1_uc010gfk.1_Missense_Mutation_p.E43K|CPNE1_uc002xdn.1_Intron|CPNE1_uc002xdo.1_Intron|CPNE1_uc002xdp.1_RNA	NM_152931	NP_690908	Q99829	CPNE1_HUMAN	copine I isoform a	43	C2 1.				lipid metabolic process|vesicle-mediated transport		calcium-dependent phospholipid binding|phosphatidylserine binding|transporter activity			upper_aerodigestive_tract(1)	1	Lung NSC(9;0.0053)|all_lung(11;0.00785)		BRCA - Breast invasive adenocarcinoma(18;0.00953)			CGCCTCACCTCAGCCCAGCTG	0.557													12	54					0	0	0.001368	0	0
TGM2	7052	broad.mit.edu	37	20	36760877	36760877	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:36760877G>A	uc002xhr.2	-	11	1741	c.1641C>T	c.(1639-1641)CTC>CTT	p.L547L	TGM2_uc002xhq.2_Silent_p.L148L|TGM2_uc010zvx.1_Silent_p.L466L|TGM2_uc010zvy.1_Silent_p.L487L|TGM2_uc002xhs.1_Silent_p.L523L	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	547					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	ATTTCTCATAGAGGATGCAAA	0.527													82	89					0	0	0.003610	0	0
SLC32A1	140679	broad.mit.edu	37	20	37356686	37356686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:37356686G>A	uc002xjc.2	+	2	1245	c.982G>A	c.(982-984)GGC>AGC	p.G328S		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	328	Lumenal, vesicle (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	TTCGCTGGAGGGCAATATGCA	0.562													12	25					0	0	0.000978	0	0
TOP1	7150	broad.mit.edu	37	20	39708772	39708772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:39708772C>T	uc002xjl.2	+	6	629	c.383C>T	c.(382-384)CCT>CTT	p.P128L	TOP1_uc010gge.1_RNA	NM_003286	NP_003277	P11387	TOP1_HUMAN	DNA topoisomerase I	128	Lys-rich.				DNA topological change|interspecies interaction between organisms|phosphorylation|programmed cell death|response to drug	chromosome|nucleolus|nucleoplasm	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity|protein binding			breast(3)|ovary(2)|central_nervous_system(1)|kidney(1)	7		Myeloproliferative disorder(115;0.00878)			Irinotecan(DB00762)|Lucanthone(DB04967)|Topotecan(DB01030)	TATTTTGTTCCTCCTAAAGAG	0.338			T	NUP98	AML*								10	52					0	0	0.001855	0	0
PTPRT	11122	broad.mit.edu	37	20	41100959	41100959	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:41100959T>C	uc002xkg.2	-	8	1581	c.1397A>G	c.(1396-1398)AAC>AGC	p.N466S	PTPRT_uc010ggj.2_Missense_Mutation_p.N466S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	466	Extracellular (Potential).|Fibronectin type-III 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				GCCCTCGGGGTTAGACAGCAA	0.597													28	33					0	0	0.002096	0	0
TOX2	84969	broad.mit.edu	37	20	42697299	42697299	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:42697299C>T	uc002xlf.3	+	8	1457	c.1440C>T	c.(1438-1440)CCC>CCT	p.P480P	TOX2_uc010ggo.2_Silent_p.P498P|TOX2_uc002xle.3_Silent_p.P456P|TOX2_uc010ggp.2_Silent_p.P456P|TOX2_uc002xlg.2_Silent_p.P297P|TOX2_uc010zwk.1_Silent_p.P376P	NM_001098798	NP_001092268	Q96NM4	TOX2_HUMAN	TOX high mobility group box family member 2	480					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(1)	1		Myeloproliferative disorder(115;0.00452)	COAD - Colon adenocarcinoma(18;0.00189)			GCCTGCTCCCCAGGGACAAAT	0.627													11	15					0	0	0.001368	0	0
KCNK15	60598	broad.mit.edu	37	20	43378776	43378776	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:43378776G>A	uc002xmr.2	+	2	354	c.290G>A	c.(289-291)GGC>GAC	p.G97D		NM_022358	NP_071753	Q9H427	KCNKF_HUMAN	potassium family, subfamily K, member 15	97						integral to membrane	potassium channel activity|voltage-gated ion channel activity				0		Myeloproliferative disorder(115;0.0122)				ATAGAGTACGGCCACGCCGCG	0.687													3	8					0	0	0.000248	0	0
MATN4	8785	broad.mit.edu	37	20	43926853	43926853	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:43926853G>A	uc002xnn.2	-	7	1570	c.1383C>T	c.(1381-1383)TCC>TCT	p.S461S	MATN4_uc002xno.2_Silent_p.S420S|MATN4_uc002xnp.2_Silent_p.S379S|MATN4_uc010zwr.1_Silent_p.S409S|MATN4_uc002xnr.1_Silent_p.S461S	NM_003833	NP_003824	O95460	MATN4_HUMAN	matrilin 4 isoform 1 precursor	502	VWFA 2.					extracellular region	protein binding				0		Myeloproliferative disorder(115;0.0122)				TGTCATCCTGGGAGCGGCCAT	0.667													27	36					0	0	0.002445	0	0
SLC12A5	57468	broad.mit.edu	37	20	44669997	44669997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:44669997C>T	uc010zxl.1	+	8	1029	c.953C>T	c.(952-954)TCT>TTT	p.S318F	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.S295F	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	318	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	CGCACGCTGTCTCGCCATGGC	0.483													9	23					0	0	0.006214	0	0
SLC12A5	57468	broad.mit.edu	37	20	44672558	44672558	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:44672558C>T	uc010zxl.1	+	11	1525	c.1449C>T	c.(1447-1449)GTC>GTT	p.V483V	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Silent_p.V460V	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	483	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TTGAGGGGGTCGTCCTGCGGG	0.557													34	26					0	0	0.005524	0	0
ZNF334	55713	broad.mit.edu	37	20	45131127	45131127	+	Missense_Mutation	SNP	C	T	T	rs138146245	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:45131127C>T	uc002xsc.2	-	5	1035	c.851G>A	c.(850-852)CGA>CAA	p.R284Q	ZNF334_uc002xsa.2_Missense_Mutation_p.R307Q|ZNF334_uc002xsb.2_Missense_Mutation_p.R246Q|ZNF334_uc002xsd.2_Missense_Mutation_p.R246Q|ZNF334_uc010ghl.2_Missense_Mutation_p.R283Q	NM_018102	NP_060572	Q9HCZ1	ZN334_HUMAN	zinc finger protein 334 isoform a	284	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)	2		Myeloproliferative disorder(115;0.0122)				ATGAATTCTTCGGTGTCGAGT	0.423													25	55					0	0	0.004656	0	0
EYA2	2139	broad.mit.edu	37	20	45702837	45702837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:45702837C>T	uc002xsm.2	+	7	898	c.524C>T	c.(523-525)CCC>CTC	p.P175L	EYA2_uc010ghp.2_Missense_Mutation_p.P175L|EYA2_uc002xsn.2_Missense_Mutation_p.P180L|EYA2_uc002xso.2_Missense_Mutation_p.P175L|EYA2_uc002xsp.2_Missense_Mutation_p.P175L|EYA2_uc002xsq.2_Missense_Mutation_p.P175L	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	175					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				AGCCAGTACCCCCAGTATTAC	0.592													27	30					0	0	0.007291	0	0
EYA2	2139	broad.mit.edu	37	20	45809551	45809551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:45809551C>T	uc002xsm.2	+	14	1776	c.1402C>T	c.(1402-1404)CCT>TCT	p.P468S	EYA2_uc010ghp.2_Intron|EYA2_uc002xsn.2_Missense_Mutation_p.P473S|EYA2_uc002xso.2_Missense_Mutation_p.P468S|EYA2_uc002xsp.2_Missense_Mutation_p.P468S|EYA2_uc002xsq.2_Missense_Mutation_p.P438S	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	468					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				GTCTGTGTTTCCTATTGAGAA	0.537													18	44					0	0	0.007413	0	0
ZMYND8	23613	broad.mit.edu	37	20	45916029	45916029	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:45916029C>T	uc002xta.1	-	8	943	c.689_splice	c.e8-1	p.G230_splice	ZMYND8_uc010ghr.1_Splice_Site_p.G205_splice|ZMYND8_uc002xst.1_Splice_Site_p.G205_splice|ZMYND8_uc002xsu.1_Splice_Site_p.G230_splice|ZMYND8_uc002xsv.1_Splice_Site_p.G205_splice|ZMYND8_uc002xsw.1_Splice_Site|ZMYND8_uc002xsx.1_Splice_Site|ZMYND8_uc002xsy.1_Splice_Site_p.G205_splice|ZMYND8_uc002xsz.1_Splice_Site_p.G167_splice|ZMYND8_uc010zxy.1_Splice_Site_p.G257_splice|ZMYND8_uc002xtb.1_Splice_Site_p.G250_splice|ZMYND8_uc002xss.2_Splice_Site_p.G230_splice|ZMYND8_uc010zxz.1_Splice_Site_p.G225_splice|ZMYND8_uc002xtc.1_Splice_Site_p.G250_splice|ZMYND8_uc002xtd.1_Splice_Site_p.G225_splice|ZMYND8_uc002xte.1_Splice_Site_p.G230_splice|ZMYND8_uc010zya.1_Splice_Site_p.G230_splice|ZMYND8_uc002xtf.1_Splice_Site_p.G250_splice|ZMYND8_uc002xtg.2_Splice_Site_p.G224_splice|ZMYND8_uc010ghs.1_Splice_Site_p.G224_splice	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b								protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			TTGTGATTTCCTAAGGGAATA	0.423													8	20					0	0	0.004482	0	0
STAU1	6780	broad.mit.edu	37	20	47734358	47734358	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:47734358G>A	uc002xud.2	-	11	1876	c.1465C>T	c.(1465-1467)CCC>TCC	p.P489S	STAU1_uc002xua.2_Missense_Mutation_p.P408S|STAU1_uc002xub.2_Missense_Mutation_p.P414S|STAU1_uc002xuc.2_Missense_Mutation_p.P408S|STAU1_uc002xue.2_Missense_Mutation_p.P408S|STAU1_uc002xuf.2_Missense_Mutation_p.P414S|STAU1_uc002xug.2_Missense_Mutation_p.P489S	NM_017453	NP_059347	O95793	STAU1_HUMAN	staufen isoform b	489						microtubule associated complex|rough endoplasmic reticulum|stress granule	double-stranded RNA binding			ovary(4)|kidney(1)	5			BRCA - Breast invasive adenocarcinoma(12;0.000644)|Colorectal(8;0.198)			TGCTCAGAGGGTCTCGTGAGA	0.537													9	38					0	0	0.004482	0	0
PARD6B	84612	broad.mit.edu	37	20	49354422	49354422	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:49354422T>A	uc002xvo.2	+	2	338	c.95T>A	c.(94-96)CTG>CAG	p.L32Q		NM_032521	NP_115910	Q9BYG5	PAR6B_HUMAN	PAR-6 beta	32	OPR.				axonogenesis|cell cycle|cell division|establishment or maintenance of cell polarity|protein complex assembly|regulation of cell migration|tight junction assembly	cytosol|tight junction	protein binding			kidney(1)	1						CGGTTTTCGCTGGAAAGATCA	0.343													28	31					0	0	0.007291	0	0
PCK1	5105	broad.mit.edu	37	20	56136498	56136498	+	Missense_Mutation	SNP	C	T	T	rs146652385		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:56136498C>T	uc002xyn.3	+	2	194	c.31C>T	c.(31-33)CTC>TTC	p.L11F	PCK1_uc010zzm.1_5'UTR	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	11					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			CGGCCTGAACCTCTCGGCCAA	0.542													34	54					0	0	0.002836	0	0
PCK1	5105	broad.mit.edu	37	20	56137213	56137213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:56137213C>T	uc002xyn.3	+	3	474	c.311C>T	c.(310-312)CCC>CTC	p.P104L	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	104					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GACACAGTGCCCATCCCCAAA	0.542													23	23					0	0	0.002299	0	0
PCK1	5105	broad.mit.edu	37	20	56138162	56138162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:56138162C>T	uc002xyn.3	+	5	852	c.689C>T	c.(688-690)TCC>TTC	p.S230F	PCK1_uc010zzm.1_Intron	NM_002591	NP_002582	P35558	PCKGC_HUMAN	cytosolic phosphoenolpyruvate carboxykinase 1	230					gluconeogenesis|glucose homeostasis|glycerol biosynthetic process from pyruvate|response to insulin stimulus	cytosol|nucleus	carboxylic acid binding|GTP binding|magnesium ion binding|manganese ion binding|phosphoenolpyruvate carboxykinase (GTP) activity			skin(1)	1	Lung NSC(12;0.000764)|all_lung(29;0.00264)|Melanoma(10;0.242)		BRCA - Breast invasive adenocarcinoma(13;9.88e-12)|Epithelial(14;3.41e-08)|all cancers(14;2.13e-07)			GAGATCATCTCCTTTGGCAGT	0.622													14	24					0	0	0.002096	0	0
NPEPL1	79716	broad.mit.edu	37	20	57274285	57274285	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:57274285C>T	uc010zzs.1	+	5	725	c.630C>T	c.(628-630)ATC>ATT	p.I210I	NPEPL1_uc010zzr.1_Silent_p.I162I|NPEPL1_uc002xzn.2_RNA|NPEPL1_uc010gjo.1_Silent_p.I182I|NPEPL1_uc002xzp.2_Silent_p.I98I	NM_024663	NP_078939	Q8NDH3	PEPL1_HUMAN	aminopeptidase-like 1	210					proteolysis	cytoplasm	aminopeptidase activity|manganese ion binding|metalloexopeptidase activity				0	all_lung(29;0.0175)		BRCA - Breast invasive adenocarcinoma(13;2.88e-09)|Colorectal(105;0.109)			AGCTGGGGATCATCCCAACCA	0.542													4	5					0	0	0.000602	0	0
ZNF831	128611	broad.mit.edu	37	20	57766405	57766405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:57766405C>T	uc002yan.2	+	1	331	c.331C>T	c.(331-333)CCT>TCT	p.P111S		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	111	Pro-rich.					intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					GCCGGCGGCCCCTACGCTGAC	0.687													4	6					0	0	0.000248	0	0
MIR646	693231	broad.mit.edu	37	20	58883571	58883571	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:58883571C>T	hsa-mir-646|MI0003661	+			c.40C>T			uc002ybl.2_Intron|uc010gjw.1_Intron																	0						acctgcttttcacctgtgatc	0													12	33					0	0	0.001855	0	0
TAF4	6874	broad.mit.edu	37	20	60575634	60575634	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:60575634G>A	uc002ybs.2	-	10	2630	c.2630C>T	c.(2629-2631)CCT>CTT	p.P877L		NM_003185	NP_003176	O00268	TAF4_HUMAN	TBP-associated factor 4	877					interspecies interaction between organisms|positive regulation of transcription, DNA-dependent|transcription elongation from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter|viral reproduction	cytoplasm|MLL1 complex|transcription factor TFIID complex|transcription factor TFTC complex	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)|pancreas(1)	3	Breast(26;1e-08)		BRCA - Breast invasive adenocarcinoma(19;3.1e-07)			TCTCTGCAAAGGCGCTTGGAG	0.463													28	38					0	0	0.008361	0	0
GTPBP5	26164	broad.mit.edu	37	20	60772927	60772927	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:60772927C>T	uc002yce.3	+	4	410	c.372C>T	c.(370-372)TCC>TCT	p.S124S	GTPBP5_uc011aab.1_5'UTR|GTPBP5_uc011aac.1_5'UTR|GTPBP5_uc011aad.1_Intron|GTPBP5_uc011aae.1_Intron|GTPBP5_uc011aaf.1_Intron|GTPBP5_uc011aag.1_Silent_p.S124S	NM_015666	NP_056481	Q9H4K7	GTPB5_HUMAN	GTP binding protein 5	124	Localized in the mitocondria.|Not localized in the mitocondria.				ribosome biogenesis	mitochondrion	GTP binding|GTPase activity|magnesium ion binding				0	Breast(26;3.52e-09)		BRCA - Breast invasive adenocarcinoma(19;2.5e-08)			AAGTCAAGTCCCTGTCGTCGG	0.527													22	37					0	0	0.003330	0	0
HRH3	11255	broad.mit.edu	37	20	60791352	60791352	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:60791352G>C	uc002ycf.2	-	3	1345	c.1048C>G	c.(1048-1050)CTG>GTG	p.L350V	HRH3_uc002ycg.2_Intron|HRH3_uc002ych.2_Intron|HRH3_uc002yci.2_Missense_Mutation_p.L350V	NM_007232	NP_009163	Q9Y5N1	HRH3_HUMAN	histamine receptor H3	350	Cytoplasmic (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|neurotransmitter secretion	integral to plasma membrane	histamine receptor activity				0	Breast(26;7.76e-09)		BRCA - Breast invasive adenocarcinoma(19;7.08e-07)		Histamine Phosphate(DB00667)	TCCCGAGACAGCCGAAAGCGC	0.642													7	9					0	0	0.001984	0	0
DIDO1	11083	broad.mit.edu	37	20	61511438	61511438	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:61511438G>A	uc002ydr.1	-	16	6134	c.5870C>T	c.(5869-5871)CCA>CTA	p.P1957L	DIDO1_uc002yds.1_Missense_Mutation_p.P1957L	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	1957	Pro-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CCTGGGACCTGGCATAAAGTT	0.582													64	85					0	0	0.003610	0	0
ZBTB46	140685	broad.mit.edu	37	20	62421195	62421195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:62421195G>A	uc002ygv.1	-	2	1117	c.916C>T	c.(916-918)CCG>TCG	p.P306S	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	306					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					CTGCTGAACGGCCACCCCGAC	0.642													41	33					0	0	0.003610	0	0
ZBTB46	140685	broad.mit.edu	37	20	62421999	62421999	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:62421999C>T	uc002ygv.1	-	2	313	c.112G>A	c.(112-114)GAG>AAG	p.E38K	ZBTB46_uc002ygu.2_RNA	NM_025224	NP_079500	Q86UZ6	ZBT46_HUMAN	zinc finger and BTB domain containing 46	38	BTB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)|ovary(1)	2	all_cancers(38;2.09e-12)|all_epithelial(29;3.8e-14)|Lung NSC(23;7.61e-10)|all_lung(23;2.64e-09)					ACCTTGCCCTCCACGACCACG	0.612													24	22					0	0	0.003330	0	0
TCEA2	6919	broad.mit.edu	37	20	62699471	62699471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr20:62699471G>A	uc011abs.1	+	4	969	c.313G>A	c.(313-315)GAG>AAG	p.E105K	TCEA2_uc011abr.1_Missense_Mutation_p.E78K|TCEA2_uc010gkq.2_Missense_Mutation_p.E78K|TCEA2_uc010gks.2_Missense_Mutation_p.E105K|TCEA2_uc010gkt.2_Missense_Mutation_p.E78K|TCEA2_uc010gku.1_Intron	NM_003195	NP_003186	Q15560	TCEA2_HUMAN	transcription elongation factor A protein 2	105					regulation of transcription elongation, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription elongation, DNA-dependent	transcription elongation factor complex	DNA binding|protein binding|translation elongation factor activity|zinc ion binding				0	all_cancers(38;3.45e-11)|all_epithelial(29;9.12e-13)|Lung NSC(23;2e-09)|all_lung(23;6.77e-09)					GGATGCCTCAGAGGCCCCGGA	0.622													7	10					0	0	0.003080	0	0
TPTE	7179	broad.mit.edu	37	21	10951345	10951345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:10951345G>A	uc002yip.1	-	10	735	c.367C>T	c.(367-369)CCT>TCT	p.P123S	TPTE_uc002yis.1_RNA|TPTE_uc002yiq.1_Missense_Mutation_p.P105S|TPTE_uc002yir.1_Missense_Mutation_p.P85S|TPTE_uc010gkv.1_5'UTR	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	123					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		TACTCCAAAGGAATATAAAGT	0.318													37	141					0	0	0.005524	0	0
BAGE2	85319	broad.mit.edu	37	21	11097569	11097569	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:11097569C>T	uc002yit.1	-	2	301	c.93G>A	c.(91-93)TTG>TTA	p.L31L	BAGE_uc002yix.2_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		CTTcaggctccaacctccagc	0.08													6	46					0	0	0.001168	0	0
CXADR	1525	broad.mit.edu	37	21	18931355	18931355	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:18931355G>A	uc002yki.2	+	4	595	c.477G>A	c.(475-477)AAG>AAA	p.K159K	CXADR_uc002ykh.1_Silent_p.K159K|CXADR_uc010gld.1_Intron|CXADR_uc010gle.1_Intron|CXADR_uc002ykj.1_Silent_p.K132K	NM_001338	NP_001329	P78310	CXAR_HUMAN	coxsackie virus and adenovirus receptor	159	Extracellular (Potential).|Ig-like C2-type 2.				blood coagulation|cell adhesion|interspecies interaction between organisms|leukocyte migration|regulation of immune response	adherens junction|basolateral plasma membrane|extracellular region|integral to plasma membrane|nucleus|tight junction	receptor activity			ovary(1)	1				Epithelial(23;0.000206)|all cancers(11;0.000302)|OV - Ovarian serous cystadenocarcinoma(11;0.0194)|Lung(58;0.0233)|COAD - Colon adenocarcinoma(22;0.0389)|Colorectal(24;0.0483)|LUSC - Lung squamous cell carcinoma(23;0.0782)		GTGACTTTAAGATAAAATGTG	0.358													19	25					0	0	0.006122	0	0
TMPRSS15	5651	broad.mit.edu	37	21	19716332	19716332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:19716332C>T	uc002ykw.2	-	11	1248	c.1217G>A	c.(1216-1218)CGA>CAA	p.R406Q		NM_002772	NP_002763	P98073	ENTK_HUMAN	enterokinase precursor	406	Extracellular (Potential).|MAM.				proteolysis	brush border|integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			ovary(5)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	8						AAGCCCCACTCGTTCTTGTCT	0.383													71	73					0	0	0.003610	0	0
CYYR1	116159	broad.mit.edu	37	21	27840827	27840827	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:27840827C>T	uc002ymd.2	-	4	780	c.458G>A	c.(457-459)AGG>AAG	p.R153K	CYYR1_uc011ack.1_RNA|CYYR1_uc002yme.2_Missense_Mutation_p.R154K	NM_052954	NP_443186	Q96J86	CYYR1_HUMAN	cysteine and tyrosine-rich 1 protein precursor	153	Cytoplasmic (Potential).					integral to membrane					0						AGATTATTTCCTTGCGTTTCC	0.512													29	22					0	0	0.001786	0	0
ADAMTS5	11096	broad.mit.edu	37	21	28296630	28296630	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:28296630G>A	uc002ymg.2	-	8	3264	c.2535C>T	c.(2533-2535)GTC>GTT	p.V845V		NM_007038	NP_008969	Q9UNA0	ATS5_HUMAN	ADAM metallopeptidase with thrombospondin type 1	845	Spacer.				proteolysis	proteinaceous extracellular matrix	integrin binding|metalloendopeptidase activity|zinc ion binding			upper_aerodigestive_tract(2)|ovary(1)|pancreas(1)	4						AGCTATAACGGACATCTAATG	0.468													48	61					0	0	0.003610	0	0
ITSN1	6453	broad.mit.edu	37	21	35260506	35260506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:35260506G>A	uc002yta.1	+	40	5336	c.5068G>A	c.(5068-5070)GGC>AGC	p.G1690S	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Missense_Mutation_p.G1685S|ITSN1_uc002ytj.2_Missense_Mutation_p.G1629S|ITSN1_uc010gmm.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1690					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						GAAAGACCAGGGCTCCAAAGG	0.532													17	26					0	0	0.004990	0	0
SLC5A3	6526	broad.mit.edu	37	21	35469535	35469535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:35469535G>A	uc002yto.2	+	2	2550	c.2038G>A	c.(2038-2040)GAG>AAG	p.E680K	MRPS6_uc002ytp.2_Intron	NM_006933	NP_008864	P53794	SC5A3_HUMAN	solute carrier family 5 (inositol transporters),	680	Extracellular (Potential).					integral to plasma membrane	myo-inositol:sodium symporter activity			ovary(2)	2						CCTGATGGAAGAGGAGGCTGT	0.413													235	233					0	0	0.003610	0	0
DOPEY2	9980	broad.mit.edu	37	21	37602940	37602940	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:37602940G>A	uc002yvg.2	+	14	1937	c.1858G>A	c.(1858-1860)GGC>AGC	p.G620S	DOPEY2_uc011aeb.1_Missense_Mutation_p.G620S	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	620					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TTGGAAGAAGGGCGGGAGCAT	0.537													30	51					0	0	0.001786	0	0
MORC3	23515	broad.mit.edu	37	21	37736479	37736479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:37736479C>T	uc002yvi.2	+	14	1617	c.1541C>T	c.(1540-1542)TCA>TTA	p.S514L		NM_015358	NP_056173	Q14149	MORC3_HUMAN	MORC family CW-type zinc finger 3	514					cell aging|maintenance of protein location in nucleus|negative regulation of fibroblast proliferation|peptidyl-serine phosphorylation|protein stabilization	aggresome|intermediate filament cytoskeleton|PML body	ATP binding|zinc ion binding			ovary(2)	2						AGACATCTTTCAGAAGGAACA	0.413													13	19					0	0	0.001368	0	0
SIM2	6493	broad.mit.edu	37	21	38117419	38117419	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:38117419C>T	uc002yvr.2	+	10	1614	c.1558C>T	c.(1558-1560)CTG>TTG	p.L520L	SIM2_uc002yvq.2_Silent_p.L520L	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	520	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						TAGGCACAGCCTGGTGCCAAG	0.627													6	6					0	0	0.001984	0	0
DSCR6	53820	broad.mit.edu	37	21	38390367	38390367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:38390367G>A	uc002yvv.2	+	4	643	c.433G>A	c.(433-435)GAA>AAA	p.E145K	DSCR6_uc011aec.1_Silent_p.R31R|DSCR6_uc010gnd.2_Silent_p.R31R	NM_018962	NP_061835	P57055	DSCR6_HUMAN	Down syndrome critical region protein 6	145						nucleus				breast(1)	1		Myeloproliferative disorder(46;0.0632)				AGGTCGGCAGGAAAATGGCCC	0.632													4	7					0	0	0.000602	0	0
TTC3	7267	broad.mit.edu	37	21	38538328	38538329	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:38538328_38538329CC>TT	uc002yvz.2	+	33	3917_3918	c.3812_3813CC>TT	c.(3811-3813)CCC>CTT	p.P1271L	TTC3_uc011aee.1_Missense_Mutation_p.P961L|TTC3_uc002ywa.2_Missense_Mutation_p.P1271L|TTC3_uc002ywb.2_Missense_Mutation_p.P1271L|TTC3_uc010gnf.2_Missense_Mutation_p.P1036L|TTC3_uc002ywc.2_Missense_Mutation_p.P961L|TTC3_uc002ywd.1_Missense_Mutation_p.P335L	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	1271					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				GATGGGCAACCCAAAGGGGTCT	0.465													57	37					0	0	0.004672	0	0
KCNJ6	3763	broad.mit.edu	37	21	39086964	39086964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:39086964C>T	uc011aej.1	-	3	549	c.496G>A	c.(496-498)GAG>AAG	p.E166K	KCNJ6_uc002ywo.2_Missense_Mutation_p.E166K	NM_002240	NP_002231	P48051	IRK6_HUMAN	potassium inwardly-rectifying channel J6	166	Extracellular (By similarity).				synaptic transmission	Golgi apparatus|voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1					Halothane(DB01159)	ATAATTCCCTCTGGGCATTTA	0.423													29	41					0	0	0.002096	0	0
DSCAM	1826	broad.mit.edu	37	21	41725524	41725524	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:41725524A>T	uc002yyq.1	-	5	1254	c.802T>A	c.(802-804)TCA>ACA	p.S268T	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	268	Extracellular (Potential).|Ig-like C2-type 3.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AACCTCCCTGAAAGTTCCAGG	0.577													12	11					0	0	0.000978	0	0
PRDM15	63977	broad.mit.edu	37	21	43256264	43256264	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:43256264C>G	uc002yzq.1	-	17	2445	c.2334G>C	c.(2332-2334)GAG>GAC	p.E778D	PRDM15_uc002yzo.2_Missense_Mutation_p.E449D|PRDM15_uc002yzp.2_Missense_Mutation_p.E449D|PRDM15_uc002yzr.1_Missense_Mutation_p.E449D	NM_022115	NP_071398	P57071	PRD15_HUMAN	PR domain containing 15 isoform 1	778	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GCTTTAGGCTCTCTTTGCGGC	0.488													23	21					0	0	0.008361	0	0
UMODL1	89766	broad.mit.edu	37	21	43508581	43508581	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:43508581C>T	uc002zaf.1	+	5	781	c.781C>T	c.(781-783)CAG>TAG	p.Q261*	UMODL1_uc002zad.1_Nonsense_Mutation_p.Q189*|UMODL1_uc002zae.1_Nonsense_Mutation_p.Q189*|UMODL1_uc002zag.1_Nonsense_Mutation_p.Q261*|UMODL1_uc010gow.1_Nonsense_Mutation_p.Q53*|UMODL1_uc002zai.1_5'UTR|UMODL1_uc010gox.1_RNA|UMODL1_uc010goy.1_Intron|UMODL1_uc002zaj.1_RNA|UMODL1_uc010goz.1_Nonsense_Mutation_p.Q53*	NM_001004416	NP_001004416	Q5DID0	UROL1_HUMAN	uromodulin-like 1 isoform 1 precursor	261	Extracellular (Potential).					cytoplasm|extracellular region|integral to membrane|plasma membrane	calcium ion binding|peptidase inhibitor activity			ovary(2)|skin(1)	3						GATCAGCGTCCAGGTGCAAGG	0.612													9	13					0	0	0.008291	0	0
UBASH3A	53347	broad.mit.edu	37	21	43838513	43838513	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:43838513C>T	uc002zbe.2	+	7	877	c.841C>T	c.(841-843)CTG>TTG	p.L281L	UBASH3A_uc002zbf.2_Silent_p.L243L|UBASH3A_uc010gpc.2_RNA|UBASH3A_uc010gpd.2_RNA|UBASH3A_uc010gpe.2_Silent_p.L243L	NM_018961	NP_061834	P57075	UBS3A_HUMAN	ubiquitin associated and SH3 domain containing,	281	SH3.					cytosol|nucleus				ovary(3)	3						TTTCTAGACCCTGAGAGCCCT	0.517													42	64					0	0	0.003214	0	0
RSPH1	89765	broad.mit.edu	37	21	43897548	43897548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:43897548C>T	uc002zbg.2	-	7	685	c.580G>A	c.(580-582)GGA>AGA	p.G194R		NM_080860	NP_543136	Q8WYR4	RSPH1_HUMAN	testis-specific gene A2	194					meiosis	cytosol|nucleus				ovary(1)	1						TCCTCTTCTCCTCTTTCCTAT	0.393													18	32					0	0	0.002299	0	0
ICOSLG	23308	broad.mit.edu	37	21	45657027	45657027	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr21:45657027G>A	uc002zee.2	-	3	263	c.129C>T	c.(127-129)AGC>AGT	p.S43S	ICOSLG_uc011afc.1_Intron|ICOSLG_uc002zef.2_Intron|ICOSLG_uc010gpp.1_Silent_p.S43S	NM_015259	NP_056074	O75144	ICOSL_HUMAN	inducible T-cell co-stimulator ligand precursor	43	Ig-like V-type.|Extracellular (Potential).				B cell activation|defense response|hyperosmotic response|positive regulation of activated T cell proliferation|signal transduction|T cell activation|T cell costimulation		receptor binding				0				Colorectal(79;0.0163)|READ - Rectum adenocarcinoma(84;0.0772)		AATCAAAACGGCTTCCTTCAG	0.498													14	58					0	0	0.001855	0	0
IL17RA	23765	broad.mit.edu	37	22	17581300	17581300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:17581300C>T	uc002zly.2	+	5	612	c.479C>T	c.(478-480)ACC>ATC	p.T160I	IL17RA_uc010gqt.2_Missense_Mutation_p.T160I	NM_014339	NP_055154	Q96F46	I17RA_HUMAN	interleukin 17A receptor precursor	160	Extracellular (Potential).				fibroblast activation|positive regulation of interleukin-23 production	integral to plasma membrane	interleukin-17 receptor activity			skin(2)	2		all_epithelial(15;0.0181)|Lung NSC(13;0.109)|all_lung(157;0.132)		Colorectal(9;0.241)		TATGAGGTGACCGTTCACCAC	0.532													27	74					0	0	0.004656	0	0
MICAL3	57553	broad.mit.edu	37	22	18300783	18300783	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:18300783G>A	uc002zng.3	-	26	4997	c.4644C>T	c.(4642-4644)TCC>TCT	p.S1548S	MICAL3_uc011agl.1_Silent_p.S1464S|MICAL3_uc010gre.1_5'Flank	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	1548						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		GCGGCCAGCAGGACGGGGGCG	0.637													6	11					0	0	0.001984	0	0
HIRA	7290	broad.mit.edu	37	22	19371175	19371175	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:19371175G>A	uc002zpf.1	-	13	1603	c.1383C>T	c.(1381-1383)ATC>ATT	p.I461I	HIRA_uc011agx.1_Silent_p.I327I|HIRA_uc010grn.1_Silent_p.I461I|HIRA_uc010gro.1_Silent_p.I417I|HIRA_uc010grp.2_RNA	NM_003325	NP_003316	P54198	HIRA_HUMAN	HIR histone cell cycle regulation defective	461	Interaction with CCNA1.|Interaction with ASF1A.|Required for repression of histone gene transcription.			Missing: Abrogates binding to ASF1A.|I->D: Abrogates binding to ASF1A.	chromatin modification|regulation of transcription from RNA polymerase II promoter	PML body	chromatin binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			ovary(1)	1	Colorectal(54;0.0993)					AGAGAGGCGTGATTCTTCTCC	0.458													35	42					0	0	0.006999	0	0
COMT	1312	broad.mit.edu	37	22	19951781	19951781	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:19951781C>T	uc002zqu.2	+	5	823	c.574C>T	c.(574-576)CAC>TAC	p.H192Y	COMT_uc002zqt.2_Missense_Mutation_p.H192Y|COMT_uc002zqv.2_Missense_Mutation_p.H192Y|COMT_uc002zqw.2_Missense_Mutation_p.H192Y|COMT_uc011ahd.1_Missense_Mutation_p.H192Y|COMT_uc002zqx.2_Missense_Mutation_p.H192Y	NM_000754	NP_000745	P21964	COMT_HUMAN	catechol-O-methyltransferase isoform MB-COMT	192					neurotransmitter biosynthetic process|neurotransmitter catabolic process|xenobiotic metabolic process	cytosol|integral to membrane|intracellular membrane-bounded organelle|microsome|plasma membrane|soluble fraction	catechol O-methyltransferase activity|magnesium ion binding|protein binding			ovary(1)	1	Colorectal(54;0.0993)				Carbidopa(DB00190)|Conjugated Estrogens(DB00286)|Diethylstilbestrol(DB00255)|Dobutamine(DB00841)|Dopamine(DB00988)|Entacapone(DB00494)|Folic Acid(DB00158)|L-Valine(DB00161)|Levodopa(DB01235)|Methyldopa(DB00968)|Modafinil(DB00745)|Morphine(DB00295)|S-Adenosylmethionine(DB00118)|Tolcapone(DB00323)	CTTCCTCGACCACTGGAAGGA	0.592													8	27					0	0	0.004482	0	0
MIR185	406961	broad.mit.edu	37	22	20020709	20020709	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:20020709C>T	hsa-mir-185|MI0000482	+			c.48C>T			C22orf25_uc010grw.1_Intron|C22orf25_uc002zrb.1_Intron|C22orf25_uc002zrc.1_Intron|C22orf25_uc002zrd.1_Intron|C22orf25_uc002zre.2_Intron|C22orf25_uc010grx.2_Intron|C22orf25_uc011ahe.1_Intron|C22orf25_uc011ahf.1_Intron|C22orf25_uc011ahg.1_Intron|C22orf25_uc002zrg.2_Intron|C22orf25_uc011ahh.1_Intron|C22orf25_uc002zrf.2_Intron|C22orf25_uc011ahi.1_Intron|uc011ahj.1_RNA																	0						GGTCCCCTCCCCAGGGGCTGG	0.672													21	18					0	0	0.007291	0	0
ZNF74	7625	broad.mit.edu	37	22	20760718	20760718	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:20760718C>T	uc010gsm.2	+	6	1607	c.1395C>T	c.(1393-1395)ATC>ATT	p.I465I	ZNF74_uc002zsg.2_Silent_p.I394I|ZNF74_uc002zsh.2_Silent_p.I465I|ZNF74_uc002zsi.2_Silent_p.I394I|ZNF74_uc010gsn.2_Silent_p.I394I	NM_003426	NP_003417	Q16587	ZNF74_HUMAN	zinc finger protein 74	465	C2H2-type 8.				multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	actin cytoskeleton|nucleus	DNA binding|RNA binding|zinc ion binding			ovary(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.0025)|Colorectal(54;0.0221)|all_neural(72;0.219)	Lung SC(17;0.0262)|all_lung(157;0.248)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			ACCGGCGCATCCACAGCGGCG	0.657													8	31					0	0	0.003080	0	0
LZTR1	8216	broad.mit.edu	37	22	21344752	21344752	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:21344752C>A	uc002zto.2	+	8	832	c.729C>A	c.(727-729)TTC>TTA	p.F243L	LZTR1_uc002ztn.2_Missense_Mutation_p.F202L|LZTR1_uc011ahy.1_Missense_Mutation_p.F224L|LZTR1_uc010gsr.1_Missense_Mutation_p.F114L	NM_006767	NP_006758	Q8N653	LZTR1_HUMAN	leucine-zipper-like transcription regulator 1	243	Kelch 4.				anatomical structure morphogenesis		sequence-specific DNA binding transcription factor activity			ovary(2)|lung(2)	4	all_cancers(11;1.83e-25)|all_epithelial(7;9.19e-23)|Lung NSC(8;3.06e-15)|all_lung(8;5.05e-14)|Melanoma(16;0.000465)|Ovarian(15;0.0028)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000204)|Lung(15;0.00494)|Epithelial(17;0.195)			TGTTTGTATTCTCTGGGCAAA	0.567													27	32					5.45727e-16	7.71493e-16	0.008361	1	0
PPM1F	9647	broad.mit.edu	37	22	22277752	22277752	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:22277752C>T	uc002zvp.1	-	8	1192	c.1078G>A	c.(1078-1080)GAT>AAT	p.D360N	PPM1F_uc011aik.1_Missense_Mutation_p.D256N	NM_014634	NP_055449	P49593	PPM1F_HUMAN	protein phosphatase 1F	360		Manganese 2 (By similarity).			apoptosis|protein dephosphorylation	protein serine/threonine phosphatase complex	metal ion binding|protein serine/threonine phosphatase activity			ovary(2)|large_intestine(1)|breast(1)|kidney(1)	5	Colorectal(54;0.105)			READ - Rectum adenocarcinoma(21;0.155)		AAGAAGCCATCACAGGCAAGC	0.647													6	19					0	0	0.003080	0	0
LOC96610	96610	broad.mit.edu	37	22	22758942	22758942	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:22758942G>A	uc011aim.1	+	53		c.6006_splice	c.e53+2							Parts of antibodies, mostly variable regions.												0						ATTCCTGACCGATTCTCTGGC	0.542													50	53					0	0	0.003610	0	0
ZNF280B	140883	broad.mit.edu	37	22	22843293	22843294	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:22843293_22843294GG>AA	uc002zwc.1	-	4	1206_1207	c.430_431CC>TT	c.(430-432)CCT>TTT	p.P144F	LOC96610_uc011aim.1_Intron	NM_080764	NP_542942	Q86YH2	Z280B_HUMAN	zinc finger protein 280B	144					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		TGTAATCAAAGGAGAAGGTAAT	0.356													23	95					0	0	0.004672	0	0
GGTLC2	91227	broad.mit.edu	37	22	22989341	22989341	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:22989341C>T	uc010gtt.2	+	2	328	c.294C>T	c.(292-294)TTC>TTT	p.F98F	LOC96610_uc011aim.1_Intron|POM121L1P_uc011ait.1_5'Flank|GGTLC2_uc010gts.2_Silent_p.F98F	NM_199127	NP_954578	Q14390	GGTL2_HUMAN	gamma-glutamyltransferase-like 4 isoform 1	98					glutathione biosynthetic process		gamma-glutamyltransferase activity			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.3e-31)|Acute lymphoblastic leukemia(6;5.54e-23)		READ - Rectum adenocarcinoma(21;0.145)		CTGCCAATTTCATCCAGCCAG	0.612													42	54					0	0	0.003610	0	0
LOC96610	96610	broad.mit.edu	37	22	23077451	23077451	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:23077451C>T	uc011aim.1	+	187		c.10142C>T								Parts of antibodies, mostly variable regions.												0						GTAATCGGCCCTCAGGGGTCC	0.567													36	121					0	0	0.006999	0	0
SMARCB1	6598	broad.mit.edu	37	22	24167501	24167501	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:24167501G>A	uc002zyb.2	+	7	1092	c.885G>A	c.(883-885)CTG>CTA	p.L295L	SMARCB1_uc002zya.2_Intron|SMARCB1_uc002zyc.2_Silent_p.L286L|SMARCB1_uc002zyd.2_Silent_p.L304L	NM_003073	NP_003064	Q12824	SNF5_HUMAN	SWI/SNF related, matrix associated, actin	295	2.|2 X approximate tandem repeats.				cell cycle|chromatin remodeling|DNA integration|interspecies interaction between organisms|nervous system development|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|retroviral genome replication|transcription, DNA-dependent	nBAF complex|npBAF complex|nucleolus|nucleoplasm|SWI/SNF complex	p53 binding	p.?(6)|p.L266_*386del(1)		soft_tissue(193)|central_nervous_system(172)|haematopoietic_and_lymphoid_tissue(23)|meninges(5)|skin(5)|bone(4)|ovary(2)|endometrium(1)|lung(1)|pancreas(1)	407		Medulloblastoma(6;2.2e-09)|all_neural(6;2.73e-05)				AGTTTGCCCTGAAGCTGTGCT	0.552			D|N|F|S		malignant rhabdoid 	malignant rhabdoid			Rhabdoid_Predisposition_syndrome|Schwannomatosis				31	32					0	0	0.002836	0	0
CABIN1	23523	broad.mit.edu	37	22	24447308	24447308	+	Silent	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:24447308T>A	uc002zzi.1	+	8	805	c.678T>A	c.(676-678)GTT>GTA	p.V226V	CABIN1_uc002zzj.1_Intron|CABIN1_uc002zzl.1_Silent_p.V226V|CABIN1_uc010guk.1_Silent_p.V181V|CABIN1_uc002zzk.1_Silent_p.V181V	NM_012295	NP_036427	Q9Y6J0	CABIN_HUMAN	calcineurin binding protein 1	226					cell surface receptor linked signaling pathway|chromatin modification	nucleus	protein phosphatase inhibitor activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						TTCACGATGTTTCGGTGAGTG	0.463													31	32					0	0	0.005524	0	0
UPB1	51733	broad.mit.edu	37	22	24916373	24916373	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:24916373C>T	uc003aaf.2	+	7	931	c.810C>T	c.(808-810)ATC>ATT	p.I270I	UPB1_uc003aae.2_Silent_p.I202I|UPB1_uc011ajt.1_Silent_p.I270I	NM_016327	NP_057411	Q9UBR1	BUP1_HUMAN	beta-ureidopropionase	270	CN hydrolase.				pyrimidine base metabolic process|pyrimidine nucleoside catabolic process	cytosol	beta-ureidopropionase activity|metal ion binding			ovary(2)	2	Colorectal(2;0.0339)					TGTGGCCCATCGAGGCCAGAA	0.612													7	13					0	0	0.004482	0	0
MYO18B	84700	broad.mit.edu	37	22	26422687	26422687	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:26422687C>T	uc003abz.1	+	43	6997	c.6747C>T	c.(6745-6747)GCC>GCT	p.A2249A	MYO18B_uc003aca.1_Silent_p.A2130A|MYO18B_uc010guy.1_Silent_p.A2131A|MYO18B_uc010guz.1_Silent_p.A2129A|MYO18B_uc011aka.1_Silent_p.A1403A|MYO18B_uc011akb.1_Silent_p.A1762A|MYO18B_uc010gva.1_Silent_p.A232A|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2249						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CTTCAGCGGCCCTCTCGGAGT	0.602													12	9					0	0	0.002450	0	0
SEZ6L	23544	broad.mit.edu	37	22	26690284	26690284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:26690284C>T	uc003acb.2	+	3	1018	c.862C>T	c.(862-864)CCT>TCT	p.P288S	SEZ6L_uc003acc.2_Missense_Mutation_p.P288S|SEZ6L_uc011akc.1_Missense_Mutation_p.P288S|SEZ6L_uc003acd.2_Missense_Mutation_p.P288S|SEZ6L_uc011akd.1_Missense_Mutation_p.P288S|SEZ6L_uc003ace.2_Missense_Mutation_p.P288S|SEZ6L_uc003acf.1_Missense_Mutation_p.P61S|SEZ6L_uc010gvc.1_Missense_Mutation_p.P61S	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	288	CUB 1.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTTCTCCAATCCTGAGGGGTA	0.512													37	46					0	0	0.008740	0	0
SEZ6L	23544	broad.mit.edu	37	22	26743840	26743840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:26743840G>A	uc003acb.2	+	11	2524	c.2368G>A	c.(2368-2370)GAC>AAC	p.D790N	SEZ6L_uc003acc.2_Missense_Mutation_p.D790N|SEZ6L_uc011akc.1_Missense_Mutation_p.D790N|SEZ6L_uc003acd.2_Missense_Mutation_p.D790N|SEZ6L_uc011akd.1_Missense_Mutation_p.D790N|SEZ6L_uc003ace.2_Missense_Mutation_p.D790N|SEZ6L_uc003acf.1_Missense_Mutation_p.D563N|SEZ6L_uc010gvc.1_Missense_Mutation_p.D563N|SEZ6L_uc011ake.1_RNA	NM_021115	NP_066938	Q9BYH1	SE6L1_HUMAN	seizure related 6 homolog (mouse)-like	790	Sushi 3.|Extracellular (Potential).					endoplasmic reticulum membrane|integral to membrane				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CTGCCAGTGGGACCTCAGCTG	0.562													18	46					0	0	0.002780	0	0
ZNRF3	84133	broad.mit.edu	37	22	29383122	29383122	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:29383122G>T	uc003aeg.2	+	2	224	c.59G>T	c.(58-60)TGG>TTG	p.W20L	ZNRF3_uc003aeh.1_Missense_Mutation_p.W20L	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	120	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GAATATGGCTGGGTAGGAGTG	0.478													23	41					4.87955e-14	6.88564e-14	0.005443	1	0
ZNRF3	84133	broad.mit.edu	37	22	29445766	29445766	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:29445766C>T	uc003aeg.2	+	8	1462	c.1297C>T	c.(1297-1299)CAC>TAC	p.H433Y	ZNRF3_uc003aeh.1_Missense_Mutation_p.H433Y	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	533	Cytoplasmic (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						CAGCTGCTATCACGGCCACCG	0.597													9	6					0	0	0.006214	0	0
HORMAD2	150280	broad.mit.edu	37	22	30494852	30494852	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:30494852C>T	uc003agy.2	+	3	128	c.63C>T	c.(61-63)TTC>TTT	p.F21F		NM_152510	NP_689723	Q8N7B1	HORM2_HUMAN	HORMA domain containing 2	21					meiosis|mitosis	chromosome|nucleus					0			Epithelial(10;0.125)			AAACAGTTTTCCCATCCCAAA	0.338													47	64					0	0	0.003610	0	0
SEC14L3	266629	broad.mit.edu	37	22	30864607	30864607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:30864607C>T	uc003ahy.2	-	5	400	c.311G>A	c.(310-312)GGG>GAG	p.G104E	SEC14L3_uc003ahz.2_Missense_Mutation_p.G27E|SEC14L3_uc003aia.2_Missense_Mutation_p.G45E|SEC14L3_uc003aib.2_Missense_Mutation_p.G45E	NM_174975	NP_777635	Q9UDX4	S14L3_HUMAN	SEC14-like 3	104	CRAL-TRIO.					integral to membrane|intracellular	lipid binding|transporter activity			ovary(3)|pancreas(1)|skin(1)	5					Vitamin E(DB00163)	ATCAAGTGGCCCAATGATGTC	0.552													32	36					0	0	0.004878	0	0
INPP5J	27124	broad.mit.edu	37	22	31529413	31529413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:31529413G>A	uc003aju.3	+	11	2445	c.2353G>A	c.(2353-2355)GAC>AAC	p.D785N	INPP5J_uc003ajv.3_Missense_Mutation_p.D418N|INPP5J_uc003ajs.3_Missense_Mutation_p.D418N|INPP5J_uc011alk.1_Missense_Mutation_p.D718N|INPP5J_uc010gwg.2_Missense_Mutation_p.D350N|INPP5J_uc003ajw.2_Intron|INPP5J_uc003ajt.3_Missense_Mutation_p.D417N|INPP5J_uc003ajx.2_Missense_Mutation_p.D150N|INPP5J_uc003ajy.2_Intron|INPP5J_uc003ajz.2_Missense_Mutation_p.D225N	NM_001002837	NP_001002837	Q15735	PI5PA_HUMAN	phosphatidylinositol (4,5) bisphosphate	785	Required for ruffle localization (By similarity).					cytoplasm|ruffle	inositol 1,3,4,5-tetrakisphosphate 5-phosphatase activity|inositol-1,4,5-trisphosphate 5-phosphatase activity|inositol-polyphosphate 5-phosphatase activity|SH3 domain binding			skin(1)	1						CCATTGCAAGGACTATGTGGC	0.502													11	12					0	0	0.002450	0	0
MYH9	4627	broad.mit.edu	37	22	36689450	36689450	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:36689450G>A	uc003apg.2	-	30	4251	c.4020C>T	c.(4018-4020)TCC>TCT	p.S1340S		NM_002473	NP_002464	P35579	MYH9_HUMAN	myosin, heavy polypeptide 9, non-muscle	1340	Potential.				actin cytoskeleton reorganization|actin filament-based movement|angiogenesis|axon guidance|blood vessel endothelial cell migration|cytokinesis|integrin-mediated signaling pathway|leukocyte migration|membrane protein ectodomain proteolysis|monocyte differentiation|platelet formation|protein transport|regulation of cell shape	actomyosin contractile ring|cleavage furrow|cytosol|myosin complex|nucleus|ruffle|stress fiber|uropod	actin filament binding|actin-dependent ATPase activity|ADP binding|ATP binding|calmodulin binding|microfilament motor activity|protein anchor|protein homodimerization activity			breast(3)|ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|lung(1)|skin(1)|kidney(1)|pancreas(1)	11						GCTCCCGGAAGGAATTCTTCT	0.637			T	ALK	ALCL		Deafness|autosomal dominant 17|Epstein syndrome|Fechtner syndrome|May-Hegglin anomaly|Sebastian syndrome		Hereditary_Macrothrombocytopenia_MYH9-associated				12	46					0	0	0.002450	0	0
TMPRSS6	164656	broad.mit.edu	37	22	37494479	37494479	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:37494479C>T	uc003aqs.1	-	3	454	c.340G>A	c.(340-342)GAA>AAA	p.E114K	TMPRSS6_uc003aqt.1_Missense_Mutation_p.E105K|TMPRSS6_uc003aqu.2_Missense_Mutation_p.E105K	NM_153609	NP_705837	Q8IU80	TMPS6_HUMAN	transmembrane protease, serine 6	114	Extracellular (Potential).				angiogenesis|extracellular matrix organization|fibrinolysis|intracellular signal transduction|proteolysis	integral to membrane|intracellular|plasma membrane	serine-type endopeptidase activity			breast(4)|ovary(1)|skin(1)	6						TTGGCGGTTTCACTGCGGAAG	0.567													114	119					0	0	0.003610	0	0
CYTH4	27128	broad.mit.edu	37	22	37688669	37688669	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:37688669G>A	uc003arf.2	+	2	143	c.27G>A	c.(25-27)GCG>GCA	p.A9A	CYTH4_uc003ard.3_Silent_p.A9A|CYTH4_uc003are.2_Silent_p.A9A|CYTH4_uc011amw.1_5'UTR|CYTH4_uc010gxe.2_RNA	NM_013385	NP_037517	Q9UIA0	CYH4_HUMAN	cytohesin 4	9					regulation of ARF protein signal transduction|regulation of cell adhesion	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						TAGAGCCCGCGGAGCTGAGCA	0.468													24	36					0	0	0.004656	0	0
SOX10	6663	broad.mit.edu	37	22	38369572	38369573	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:38369572_38369573GG>AA	uc003aun.1	-	4	1608_1609	c.1330_1331CC>TT	c.(1330-1332)CCC>TTC	p.P444F	POLR2F_uc003aum.2_Intron|SOX10_uc003auo.1_Missense_Mutation_p.P444F	NM_006941	NP_008872	P56693	SOX10_HUMAN	SRY (sex determining region Y)-box 10	444						cytoplasm|nucleus	DNA binding|identical protein binding|transcription coactivator activity				0	Melanoma(58;0.045)					GGGCCCTGAGGGGCTGGGGTCA	0.673													9	13					0	0	0.004672	0	0
NPTXR	23467	broad.mit.edu	37	22	39219171	39219171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:39219171C>T	uc003awk.2	-	4	1349	c.1195G>A	c.(1195-1197)GGG>AGG	p.G399R		NM_014293	NP_055108	O95502	NPTXR_HUMAN	neuronal pentraxin receptor	399	Pentaxin.|Extracellular (Potential).					integral to membrane	metal ion binding	p.G399G(1)		central_nervous_system(2)|skin(1)	3	Melanoma(58;0.04)					TGCAGCTCCCCGTCCTGGTAG	0.627													17	26					0	0	0.006122	0	0
TNRC6B	23112	broad.mit.edu	37	22	40706893	40706893	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:40706893C>A	uc011aor.1	+	17	4542	c.4331C>A	c.(4330-4332)ACA>AAA	p.T1444K	TNRC6B_uc003aym.2_Missense_Mutation_p.T640K|TNRC6B_uc003ayn.3_Missense_Mutation_p.T1334K|TNRC6B_uc003ayo.2_Missense_Mutation_p.T1191K	NM_001162501	NP_001155973	Q9UPQ9	TNR6B_HUMAN	trinucleotide repeat containing 6B isoform 1	1444					gene silencing by RNA|regulation of translation	cytoplasmic mRNA processing body	nucleotide binding|RNA binding				0						CCTGGTGACACACTGGGTGGC	0.498													6	11					3.59834e-05	5.04549e-05	0.001168	1	0
MEI1	150365	broad.mit.edu	37	22	42128505	42128505	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:42128505C>T	uc003baz.1	+	11	1254	c.1229C>T	c.(1228-1230)TCA>TTA	p.S410L	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|MEI1_uc003bay.3_Missense_Mutation_p.S410L|MEI1_uc011apd.1_RNA	NM_152513	NP_689726	Q5TIA1	MEI1_HUMAN	meiosis defective 1	410							binding			central_nervous_system(1)|skin(1)	2						TTCACAAGCTCAGCCATGTGC	0.552													17	23					0	0	0.008871	0	0
NAGA	4668	broad.mit.edu	37	22	42456378	42456379	+	Nonsense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:42456378_42456379GG>AA	uc003bbx.2	-	10	1277_1278	c.1140_1141CC>TT	c.(1138-1143)CTCCGA>CTTTGA	p.R381*	NAGA_uc003bby.2_Nonsense_Mutation_p.R381*|NAGA_uc003bbw.3_Nonsense_Mutation_p.R381*	NM_000262	NP_000253	P17050	NAGAB_HUMAN	alpha-N-acetylgalactosaminidase precursor	381					glycoside catabolic process|glycosylceramide catabolic process|oligosaccharide metabolic process	lysosome	alpha-galactosidase activity|alpha-N-acetylgalactosaminidase activity|cation binding|protein homodimerization activity			central_nervous_system(1)	1						GTTTCATCTCGGAGGCCACTGA	0.569													33	36					0	0	0.004672	0	0
A4GALT	53947	broad.mit.edu	37	22	43089082	43089082	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:43089082C>T	uc003bdb.2	-	3	1137	c.876G>A	c.(874-876)TGG>TGA	p.W292*	A4GALT_uc010gzd.2_Nonsense_Mutation_p.W292*	NM_017436	NP_059132	Q9NPC4	A4GAT_HUMAN	alpha 1,4-galactosyltransferase	292	Lumenal (Potential).				glycosphingolipid biosynthetic process|plasma membrane organization	Golgi stack|integral to Golgi membrane|membrane fraction	lactosylceramide 4-alpha-galactosyltransferase activity			central_nervous_system(2)	2						AGTACTTCTTCCAGTCCTGCC	0.647													5	11					0	0	0.000602	0	0
SCUBE1	80274	broad.mit.edu	37	22	43616506	43616506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:43616506G>A	uc003bdt.1	-	14	1725	c.1637C>T	c.(1636-1638)TCC>TTC	p.S546F		NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1	546					adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				TGTGATGTGGGACACCTCCTT	0.577													12	43					0	0	0.001368	0	0
SCUBE1	80274	broad.mit.edu	37	22	43654224	43654224	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:43654224C>T	uc003bdt.1	-	6	815	c.727_splice	c.e6+1	p.E243_splice	SCUBE1_uc003bdu.1_Splice_Site_p.E243_splice	NM_173050	NP_766638	Q8IWY4	SCUB1_HUMAN	signal peptide, CUB domain, EGF-like 1						adult heart development|blood coagulation|endothelial cell differentiation|inflammatory response|post-embryonic development|protein homooligomerization	external side of plasma membrane|extracellular space|extrinsic to plasma membrane	calcium ion binding|identical protein binding|protein heterodimerization activity			central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	5		all_neural(38;0.0414)|Ovarian(80;0.07)				TGCCTACTTACCGATGCACGT	0.677													13	25					0	0	0.003163	0	0
EFCAB6	64800	broad.mit.edu	37	22	44083391	44083391	+	Silent	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:44083391A>G	uc003bdy.1	-	11	1317	c.1102T>C	c.(1102-1104)TTG>CTG	p.L368L	EFCAB6_uc003bdz.1_Silent_p.L216L|EFCAB6_uc010gzi.1_Silent_p.L216L|EFCAB6_uc010gzk.1_Intron|EFCAB6_uc011aqa.1_Intron|EFCAB6_uc003bea.1_Silent_p.L365L	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	368					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				CTAACTTGCAACCCCTGAGGC	0.289													26	32					0	0	0.006320	0	0
PARVG	64098	broad.mit.edu	37	22	44602292	44602292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:44602292G>A	uc011aqe.1	+	14	1406	c.982G>A	c.(982-984)GGA>AGA	p.G328R	PARVG_uc003bep.2_Missense_Mutation_p.G328R|PARVG_uc011aqf.1_Missense_Mutation_p.G328R|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	328					cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				GACGCCCCATGGAGCCCCGAA	0.622													16	7					0	0	0.004990	0	0
FBLN1	2192	broad.mit.edu	37	22	45923826	45923826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr22:45923826C>T	uc003bgj.1	+	4	568	c.421C>T	c.(421-423)CGG>TGG	p.R141W	FBLN1_uc003bgg.1_Missense_Mutation_p.R141W|FBLN1_uc003bgh.2_Missense_Mutation_p.R141W|FBLN1_uc010gzz.2_Nonsense_Mutation_p.Q179*|FBLN1_uc003bgi.1_Missense_Mutation_p.R141W	NM_006486	NP_006477	P23142	FBLN1_HUMAN	fibulin 1 isoform D	141	Anaphylatoxin-like 3.				interspecies interaction between organisms	extracellular space|soluble fraction	calcium ion binding|extracellular matrix structural constituent|protein binding			ovary(1)|central_nervous_system(1)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		ACAGGTCTTCCAGGCATGCTG	0.592													19	42					0	0	0.001523	0	0
ITPR1	3708	broad.mit.edu	37	3	4854903	4854903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:4854903C>T	uc003bqa.2	+	54	7750	c.7402C>T	c.(7402-7404)CCT>TCT	p.P2468S	ITPR1_uc010hca.1_Missense_Mutation_p.P2453S|ITPR1_uc011asu.1_Missense_Mutation_p.P479S|ITPR1_uc003bqc.2_Missense_Mutation_p.P1438S|ITPR1_uc010hcc.1_Missense_Mutation_p.P236S|ITPR1_uc011asv.1_Missense_Mutation_p.P192S	NM_001099952	NP_001093422	Q14643	ITPR1_HUMAN	inositol 1,4,5-triphosphate receptor, type 1	2516	Lumenal (Potential).|Interaction with ERP44 (By similarity).				activation of phospholipase C activity|cell death|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	endoplasmic reticulum membrane|integral to membrane|platelet dense granule membrane|platelet dense tubular network membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity|intracellular ligand-gated calcium channel activity|phosphatidylinositol binding|protein binding			lung(7)|breast(5)|ovary(4)|large_intestine(1)|liver(1)|skin(1)|kidney(1)|pancreas(1)	21				Epithelial(13;0.0199)|OV - Ovarian serous cystadenocarcinoma(96;0.0361)|all cancers(10;0.0982)		CTGCTCCTCTCCTGCACCCAG	0.507													34	36					0	0	0.003271	0	0
GRM7	2917	broad.mit.edu	37	3	7620747	7620747	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:7620747C>T	uc003bqm.2	+	8	2428	c.2154C>T	c.(2152-2154)TTC>TTT	p.F718F	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.F718F|GRM7_uc003bql.2_Silent_p.F718F|GRM7_uc003bqn.1_Silent_p.F301F|GRM7_uc010hch.1_Silent_p.F229F	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	718	Helical; Name=4; (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	TAGGGGTGTTCATTTGGTTTG	0.443													19	18					0	0	0.001523	0	0
MTMR14	64419	broad.mit.edu	37	3	9731824	9731824	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:9731824C>T	uc003brz.2	+	17	1734	c.1610C>T	c.(1609-1611)CCC>CTC	p.P537L	MTMR14_uc003bsa.2_Missense_Mutation_p.P537L|MTMR14_uc003bsb.2_Intron|MTMR14_uc011ath.1_Intron|MTMR14_uc010hcl.2_Intron|MTMR14_uc003bsc.2_Intron	NM_001077525	NP_001070993	Q8NCE2	MTMRE_HUMAN	jumpy isoform 2	537						perinuclear region of cytoplasm|ruffle	phosphatidylinositol-3-phosphatase activity|protein tyrosine phosphatase activity			skin(1)	1	Medulloblastoma(99;0.227)					GTCCCCAAACCCAGGTGAGGA	0.572													10	24					0	0	0.008291	0	0
CAMK1	8536	broad.mit.edu	37	3	9804607	9804607	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:9804607C>T	uc003bst.2	-	5	598	c.420G>A	c.(418-420)CGG>CGA	p.R140R	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_5'Flank|uc003bsv.1_RNA	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	140	Protein kinase.				cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		CCTTGAGATCCCGGTGTACAA	0.502													7	29					0	0	0.001984	0	0
TATDN2	9797	broad.mit.edu	37	3	10311828	10311828	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:10311828A>G	uc003bvg.2	+	4	1543	c.962A>G	c.(961-963)GAG>GGG	p.E321G	TATDN2_uc003bvf.2_Missense_Mutation_p.E321G|TATDN2_uc011atr.1_Missense_Mutation_p.E321G|TATDN2_uc011ats.1_RNA|TATDN2_uc011att.1_RNA	NM_014760	NP_055575	Q93075	TATD2_HUMAN	TatD DNase domain containing 2	321						nucleus	endodeoxyribonuclease activity, producing 5'-phosphomonoesters|metal ion binding			pancreas(2)	2						AAAGATAGGGAGGTGGTGATG	0.507													13	62					0	0	0.001855	0	0
SLC6A1	6529	broad.mit.edu	37	3	11078587	11078587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:11078587C>T	uc010hdq.2	+	16	2146	c.1735C>T	c.(1735-1737)CGC>TGC	p.R579C		NM_003042	NP_003033	P30531	SC6A1_HUMAN	solute carrier family 6 (neurotransmitter	579	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(1)|skin(1)	2		Ovarian(110;0.0392)		OV - Ovarian serous cystadenocarcinoma(96;0.00099)	Cocaine(DB00907)|Tiagabine(DB00906)	AGACATCGTTCGCCCAGAGAA	0.637													17	31					0	0	0.008871	0	0
HRH1	3269	broad.mit.edu	37	3	11301038	11301038	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:11301038C>T	uc010hdr.2	+	2	657	c.315C>T	c.(313-315)TCC>TCT	p.S105S	HRH1_uc010hds.2_Silent_p.S105S|HRH1_uc010hdt.2_Silent_p.S105S|HRH1_uc003bwb.3_Silent_p.S105S	NM_001098213	NP_001091683	P35367	HRH1_HUMAN	histamine receptor H1	105	Helical; Name=3; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|inflammatory response	cytoplasm|integral to plasma membrane|nucleus	histamine receptor activity			large_intestine(1)|ovary(1)	2					Aceprometazine(DB01615)|Astemizole(DB00637)|Azatadine(DB00719)|Azelastine(DB00972)|Benzquinamide(DB00767)|Bepotastine(DB04890)|Bromodiphenhydramine(DB01237)|Brompheniramine(DB00835)|Buclizine(DB00354)|Carbinoxamine(DB00748)|Cetirizine(DB00341)|Chlophedianol(DB04837)|Chlorpheniramine(DB01114)|Chlorprothixene(DB01239)|Cinnarizine(DB00568)|Clemastine(DB00283)|Clozapine(DB00363)|Cyclizine(DB01176)|Cyproheptadine(DB00434)|Desipramine(DB01151)|Desloratadine(DB00967)|Dexbrompheniramine(DB00405)|Dimenhydrinate(DB00985)|Diphenhydramine(DB01075)|Diphenylpyraline(DB01146)|Doxepin(DB01142)|Doxylamine(DB00366)|Emedastine(DB01084)|Epinastine(DB00751)|Fexofenadine(DB00950)|Flunarizine(DB04841)|Histamine Phosphate(DB00667)|Hydroxyzine(DB00557)|Ketotifen(DB00920)|Levocabastine(DB01106)|Loratadine(DB00455)|Maprotiline(DB00934)|Meclizine(DB00737)|Mequitazine(DB01071)|Methdilazine(DB00902)|Methotrimeprazine(DB01403)|Mianserin(DB06148)|Mirtazapine(DB00370)|Nedocromil(DB00716)|Olanzapine(DB00334)|Olopatadine(DB00768)|Orphenadrine(DB01173)|Pemirolast(DB00885)|Phenindamine(DB01619)|Pheniramine(DB01620)|Prochlorperazine(DB00433)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Quetiapine(DB01224)|Risperidone(DB00734)|Terfenadine(DB00342)|Thiethylperazine(DB00372)|Trazodone(DB00656)|Trimeprazine(DB01246)|Tripelennamine(DB00792)|Triprolidine(DB00427)|Ziprasidone(DB00246)	TTTGGCTTTCCATGGACTATG	0.542													37	119					0	0	0.005524	0	0
XPC	7508	broad.mit.edu	37	3	14200020	14200020	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:14200020G>A	uc011ave.1	-	9	1467	c.1363C>T	c.(1363-1365)CCC>TCC	p.P455S	XPC_uc011avf.1_Missense_Mutation_p.P262S|XPC_uc011avg.1_Missense_Mutation_p.P418S	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C	455	Asp/Glu-rich (acidic).				nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						TCATCAGAGGGATCAGAGGCT	0.597			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				12	34					0	0	0.000978	0	0
TOP2B	7155	broad.mit.edu	37	3	25665114	25665114	+	Silent	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:25665114A>C	uc011awn.1	-	21	2662	c.2619T>G	c.(2617-2619)GGT>GGG	p.G873G	TOP2B_uc003cdj.2_Silent_p.G868G	NM_001068	NP_001059	Q02880	TOP2B_HUMAN	DNA topoisomerase II, beta isozyme	873					DNA topological change|DNA-dependent DNA replication|mitotic cell cycle G2/M transition decatenation checkpoint|mitotic recombination|resolution of meiotic recombination intermediates|sister chromatid segregation	cytosol|DNA topoisomerase complex (ATP-hydrolyzing)|nucleolus|nucleoplasm|synaptonemal complex|WINAC complex	ATP binding|chromatin binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA-dependent ATPase activity|histone deacetylase binding|protein C-terminus binding|protein heterodimerization activity|protein kinase C binding|sequence-specific DNA binding transcription factor activity			breast(2)|ovary(1)|lung(1)|skin(1)	5						TGCCCTCAGCACCATTTATTA	0.428													19	33					0	0	0.008871	0	0
NGLY1	55768	broad.mit.edu	37	3	25761670	25761670	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:25761670G>A	uc003cdl.2	-	11	1732	c.1624C>T	c.(1624-1626)CGA>TGA	p.R542*	NGLY1_uc010hfg.2_Nonsense_Mutation_p.R524*|NGLY1_uc003cdm.2_Intron|NGLY1_uc011awo.1_Nonsense_Mutation_p.R500*|NGLY1_uc003cdk.2_RNA	NM_018297	NP_060767	Q96IV0	NGLY1_HUMAN	N-glycanase 1 isoform 1	542	PAW.				glycoprotein catabolic process	cytoplasm	metal ion binding|peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase activity|protein binding			breast(1)	1						CCTTCCTTTCGGGCCAAATAT	0.363													21	19					0	0	0.001523	0	0
STT3B	201595	broad.mit.edu	37	3	31658501	31658501	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:31658501T>A	uc011axe.1	+	7	1057	c.1057T>A	c.(1057-1059)TTC>ATC	p.F353I	STT3B_uc010hft.1_Missense_Mutation_p.F353I|STT3B_uc003cer.1_Missense_Mutation_p.F353I|STT3B_uc003cet.2_Missense_Mutation_p.F104I	NM_178862	NP_849193	Q8TCJ2	STT3B_HUMAN	source of immunodominant MHC-associated	353	Helical; (Potential).				protein N-linked glycosylation via asparagine	integral to membrane|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0						CCAGACCCTTTTCTTTTTGGG	0.403													112	121					0	0	0.003610	0	0
TRANK1	9881	broad.mit.edu	37	3	36898642	36898642	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:36898642C>T	uc003cgj.2	-	3	1091	c.789G>A	c.(787-789)AAG>AAA	p.K263K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	813					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						GGATGATTTTCTTCTTGATGA	0.507													72	105					0	0	0.003610	0	0
GOLGA4	2803	broad.mit.edu	37	3	37365667	37365667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:37365667C>T	uc003cgv.2	+	14	2594	c.2290C>T	c.(2290-2292)CTC>TTC	p.L764F	GOLGA4_uc010hgr.1_Missense_Mutation_p.L325F|GOLGA4_uc003cgw.2_Missense_Mutation_p.L786F|GOLGA4_uc010hgs.2_Intron|GOLGA4_uc003cgx.2_Missense_Mutation_p.L645F	NM_002078	NP_002069	Q13439	GOGA4_HUMAN	golgi autoantigen, golgin subfamily a, 4	764	Potential.|Glu-rich.				Golgi to plasma membrane protein transport	Golgi membrane|trans-Golgi network	protein binding			ovary(2)|breast(1)|central_nervous_system(1)	4						ACTTGAGCTTCTCTTGAAGGA	0.408													12	41					0	0	0.002450	0	0
DLEC1	9940	broad.mit.edu	37	3	38163826	38163826	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:38163826G>A	uc003cho.1	+	37	5212	c.5191G>A	c.(5191-5193)GGT>AGT	p.G1731S	DLEC1_uc003chp.1_Silent_p.S1689S|DLEC1_uc010hgv.1_Missense_Mutation_p.G1734S|DLEC1_uc003chr.1_Missense_Mutation_p.G802S|DLEC1_uc003chs.1_Silent_p.S246S	NM_007335	NP_031361	Q9Y238	DLEC1_HUMAN	deleted in lung and esophageal cancer 1 isoform	1731					negative regulation of cell proliferation	cytoplasm				ovary(2)|pancreas(2)|central_nervous_system(2)|skin(2)|breast(1)	9				KIRC - Kidney renal clear cell carcinoma(284;0.0664)|Kidney(284;0.0827)		AGGTGTGCTCGGTGAGAAGTC	0.642													29	26					0	0	0.002836	0	0
MYD88	4615	broad.mit.edu	37	3	38182680	38182680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:38182680C>T	uc003chx.2	+	5	1041	c.857C>T	c.(856-858)CCC>CTC	p.P286L	MYD88_uc011ayi.1_Missense_Mutation_p.P278L|MYD88_uc011ayj.1_3'UTR|MYD88_uc011ayk.1_3'UTR|MYD88_uc011ayl.1_Missense_Mutation_p.P233L	NM_002468	NP_002459	Q99836	MYD88_HUMAN	myeloid differentiation primary response gene	265	TIR.				3'-UTR-mediated mRNA stabilization|anti-apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-17 production|positive regulation of interleukin-23 production|positive regulation of interleukin-6 production|regulation of inflammatory response|response to interleukin-1|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|intrinsic to membrane|plasma membrane	death receptor binding|TIR domain binding|transmembrane receptor activity			haematopoietic_and_lymphoid_tissue(93)|breast(1)	94				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		AAAGAGTTCCCCAGCATCCTG	0.567			Mis 		ABC-DLBCL								29	38					0	0	0.006320	0	0
SCN10A	6336	broad.mit.edu	37	3	38770293	38770293	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:38770293G>A	uc003ciq.2	-	15	2380	c.2380C>T	c.(2380-2382)CTG>TTG	p.L794L		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	794	Helical; Name=S5 of repeat II; (Potential).|II.				sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ATGATGGCCAGGATGATGGTG	0.517													21	55					0	0	0.002299	0	0
TGM4	7047	broad.mit.edu	37	3	44951607	44951607	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:44951607G>A	uc003coc.3	+	11	1426	c.1353G>A	c.(1351-1353)ATG>ATA	p.M451I		NM_003241	NP_003232	P49221	TGM4_HUMAN	transglutaminase 4 (prostate)	451					peptide cross-linking|protein polyamination		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00963)|KIRC - Kidney renal clear cell carcinoma(197;0.0546)|Kidney(197;0.0686)	L-Glutamine(DB00130)	GGCAGGTCATGGATCATGCCT	0.517													12	39					0	0	0.000978	0	0
SLC6A20	54716	broad.mit.edu	37	3	45812903	45812903	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:45812903C>T	uc011bai.1	-	6	865	c.741G>A	c.(739-741)CAG>CAA	p.Q247Q	SLC6A20_uc003cow.2_5'UTR|SLC6A20_uc011baj.1_Silent_p.Q210Q	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	247	Helical; Name=6; (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		AGAAGAAGATCTGGGTGGCTG	0.587													11	25					0	0	0.008291	0	0
PTH1R	5745	broad.mit.edu	37	3	46943282	46943282	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:46943282C>T	uc003cqm.2	+	13	1346	c.1143C>T	c.(1141-1143)ATC>ATT	p.I381I	PTH1R_uc003cqn.2_Silent_p.I381I	NM_000316	NP_000307	Q03431	PTH1R_HUMAN	parathyroid hormone receptor 1 precursor	381	Helical; Name=5; (Potential).					cytoplasm|integral to plasma membrane|nucleus	parathyroid hormone receptor activity|peptide hormone binding|protein self-association			breast(1)	1						TCATCAATATCGTCCGGGTGC	0.662									Ollier_disease_/_Maffuci_syndrome				16	24					0	0	0.008871	0	0
NME6	10201	broad.mit.edu	37	3	48336702	48336702	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:48336702A>G	uc003csp.3	-	5	308	c.257T>C	c.(256-258)CTT>CCT	p.L86P	NME6_uc003cso.2_Missense_Mutation_p.L94P|NME6_uc011bbh.1_Silent_p.L73L|NME6_uc010hju.2_5'UTR|NME6_uc011bbi.1_Intron	NM_005793	NP_005784	O75414	NDK6_HUMAN	nucleoside diphosphate kinase type 6	86					anti-apoptosis|apoptosis|CTP biosynthetic process|GTP biosynthetic process|negative regulation of cell growth|negative regulation of mitosis|UTP biosynthetic process	mitochondrion	ATP binding|metal ion binding|nucleoside diphosphate kinase activity				0				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00609)		CTTGTGGGCAAGGATGTAGGC	0.557													17	11					0	0	0.004990	0	0
PLXNB1	5364	broad.mit.edu	37	3	48465165	48465165	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:48465165C>A	uc003csw.2	-	3	1126	c.856G>T	c.(856-858)GAG>TAG	p.E286*	PLXNB1_uc003csu.2_Nonsense_Mutation_p.E286*|PLXNB1_uc003csx.2_Nonsense_Mutation_p.E286*|PLXNB1_uc010hjx.1_RNA	NM_002673	NP_002664	O43157	PLXB1_HUMAN	plexin B1 precursor	286	Extracellular (Potential).|Sema.				axon guidance|cell migration|intracellular signal transduction|regulation of cell shape|regulation of cytoskeleton organization|regulation of small GTPase mediated signal transduction|semaphorin-plexin signaling pathway	extracellular region|integral to plasma membrane|intracellular|semaphorin receptor complex	GTPase activator activity|semaphorin receptor activity|semaphorin receptor binding			ovary(2)|pancreas(1)|breast(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGCGCCACCTCCCTGGACGTG	0.672													10	16					3.07112e-06	4.31014e-06	0.000978	1	0
COL7A1	1294	broad.mit.edu	37	3	48607064	48607064	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:48607064G>A	uc003ctz.2	-	101	7576	c.7575C>T	c.(7573-7575)ATC>ATT	p.I2525I		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	2525	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		GAGGCCCCAGGATCACAGCTG	0.692													4	8					0	0	0.001168	0	0
IMPDH2	3615	broad.mit.edu	37	3	49065158	49065158	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:49065158G>A	uc003cvt.2	-	5	608	c.516C>T	c.(514-516)GAC>GAT	p.D172D		NM_000884	NP_000875	P12268	IMDH2_HUMAN	inosine monophosphate dehydrogenase 2	172	CBS 1.				GMP biosynthetic process|purine base metabolic process	cytosol|nucleus	IMP dehydrogenase activity|metal ion binding|nucleotide binding|protein binding			lung(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Mycophenolate mofetil(DB00688)|Mycophenolic acid(DB01024)|NADH(DB00157)	CCAAGAAACAGTCATGTTCCT	0.522													37	36					0	0	0.002522	0	0
BSN	8927	broad.mit.edu	37	3	49699631	49699631	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:49699631G>A	uc003cxe.3	+	6	10467	c.10353G>A	c.(10351-10353)GGG>GGA	p.G3451G		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	3451					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CATACAGTGGGGAGAAGCTGT	0.607													20	18					0	0	0.001882	0	0
GNAT1	2779	broad.mit.edu	37	3	50232077	50232078	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:50232077_50232078GG>AA	uc003cym.2	+	7	968_969	c.852_853GG>AA	c.(850-855)CCGGAC>CCAAAC	p.D285N	GNAT1_uc003cyl.2_Missense_Mutation_p.D285N	NM_144499	NP_653082	P11488	GNAT1_HUMAN	rod-type transducin alpha subunit	285					detection of chemical stimulus involved in sensory perception of bitter taste|G-protein signaling, coupled to cAMP nucleotide second messenger|negative regulation of cyclic-nucleotide phosphodiesterase activity|rhodopsin mediated phototransduction|sensory perception of umami taste	heterotrimeric G-protein complex|photoreceptor inner segment|photoreceptor outer segment membrane	acyl binding|G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GDP binding|GTP binding|GTPase activity|protein kinase binding|signal transducer activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.000272)|KIRC - Kidney renal clear cell carcinoma(197;0.00544)|Kidney(197;0.00605)		TCTGTTTCCCGGACTACGATGG	0.634											OREG0015580	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	30	43					0	0	0.004672	0	0
STAB1	23166	broad.mit.edu	37	3	52551110	52551111	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:52551110_52551111GG>AA	uc003dej.2	+	42	4548_4549	c.4474_4475GG>AA	c.(4474-4476)GGG>AAG	p.G1492K	STAB1_uc003dek.1_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1492	Extracellular (Potential).|EGF-like 11.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CATGGGCGACGGGGAGCTGTGC	0.624													8	22					0	0	0.004672	0	0
RFT1	91869	broad.mit.edu	37	3	53155743	53155743	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:53155743C>T	uc003dgj.2	-	5	584	c.530G>A	c.(529-531)TGG>TAG	p.W177*	RFT1_uc003dgk.2_Nonsense_Mutation_p.W138*	NM_052859	NP_443091	Q96AA3	RFT1_HUMAN	RFT1 homolog	177					carbohydrate transport|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	integral to membrane	lipid transporter activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(193;6.98e-05)|Kidney(197;0.0017)|KIRC - Kidney renal clear cell carcinoma(197;0.00192)|OV - Ovarian serous cystadenocarcinoma(275;0.104)		GTACAATCCCCAGTGAGGCAA	0.433													11	14					0	0	0.000978	0	0
CACNA1D	776	broad.mit.edu	37	3	53694254	53694254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:53694254C>T	uc003dgv.3	+	5	881	c.718C>T	c.(718-720)CGT>TGT	p.R240C	CACNA1D_uc003dgu.3_Missense_Mutation_p.R240C|CACNA1D_uc003dgy.3_Missense_Mutation_p.R240C	NM_001128840	NP_001122312	Q01668	CAC1D_HUMAN	calcium channel, voltage-dependent, L type,	240	Helical; Name=S4 of repeat I; (Potential).|I.				axon guidance|energy reserve metabolic process|regulation of insulin secretion	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(6)|upper_aerodigestive_tract(2)|liver(1)|central_nervous_system(1)|skin(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.00029)|KIRC - Kidney renal clear cell carcinoma(284;0.0145)|Kidney(284;0.0175)|OV - Ovarian serous cystadenocarcinoma(275;0.0613)	Verapamil(DB00661)	CAAAGCCCTCCGTGCCTTTCG	0.458													19	23					0	0	0.006122	0	0
CHDH	55349	broad.mit.edu	37	3	53853615	53853615	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:53853615G>A	uc003dgz.2	-	7	1647	c.1207C>T	c.(1207-1209)CTG>TTG	p.L403L		NM_018397	NP_060867	Q8NE62	CHDH_HUMAN	choline dehydrogenase precursor	403					alcohol metabolic process		choline dehydrogenase activity|flavin adenine dinucleotide binding			ovary(1)|central_nervous_system(1)	2		Hepatocellular(537;0.152)		BRCA - Breast invasive adenocarcinoma(193;0.000158)|KIRC - Kidney renal clear cell carcinoma(284;0.00588)|Kidney(284;0.00673)|OV - Ovarian serous cystadenocarcinoma(275;0.118)	Choline(DB00122)	TGGGATGGCAGGAAATGGAAC	0.627													8	19					0	0	0.004482	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54537588	54537588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:54537588G>A	uc003dhf.2	+	5	499	c.451G>A	c.(451-453)GAA>AAA	p.E151K	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.E57K|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	151	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		GCTGGGAAAGGAATTCATCTT	0.373													51	46					0	0	0.003610	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54914848	54914848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:54914848C>T	uc003dhf.2	+	21	1918	c.1870C>T	c.(1870-1872)CAT>TAT	p.H624Y	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.H530Y|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.H358Y|uc003dhk.1_Intron	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	624	Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		TTCCAGAGGTCATGGGAAATA	0.463													47	168					0	0	0.003610	0	0
WNT5A	7474	broad.mit.edu	37	3	55504313	55504313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:55504313G>A	uc003dhn.2	-	5	1268	c.950C>T	c.(949-951)TCG>TTG	p.S317L	WNT5A_uc003dhm.2_Missense_Mutation_p.S302L|WNT5A_uc010hmw.2_Missense_Mutation_p.S302L|WNT5A_uc010hmx.2_Missense_Mutation_p.S228L	NM_003392	NP_003383	P41221	WNT5A_HUMAN	wingless-type MMTV integration site family,	317					activation of JUN kinase activity|activation of protein kinase B activity|axon guidance|cartilage development|cellular protein localization|cellular response to calcium ion|cellular response to interferon-gamma|cellular response to lipopolysaccharide|cellular response to retinoic acid|cellular response to transforming growth factor beta stimulus|cervix development|cochlea morphogenesis|convergent extension involved in organogenesis|dopaminergic neuron differentiation|dorsal/ventral axis specification|embryonic digit morphogenesis|embryonic skeletal system development|epithelial cell proliferation involved in mammary gland duct elongation|epithelial to mesenchymal transition|face development|genitalia development|heart looping|hemopoietic stem cell proliferation|keratinocyte differentiation|lateral sprouting involved in mammary gland duct morphogenesis|lens development in camera-type eye|male gonad development|mammary gland branching involved in thelarche|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of fat cell differentiation|negative regulation of fibroblast growth factor receptor signaling pathway|negative regulation of mesenchymal cell proliferation|negative regulation of transcription, DNA-dependent|neural tube closure|olfactory bulb interneuron development|optic cup formation involved in camera-type eye development|palate development|positive regulation of angiogenesis|positive regulation of cartilage development|positive regulation of cGMP metabolic process|positive regulation of chemokine biosynthetic process|positive regulation of cytokine secretion involved in immune response|positive regulation of endothelial cell migration|positive regulation of endothelial cell proliferation|positive regulation of fibroblast proliferation|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|positive regulation of interleukin-6 production|positive regulation of JNK cascade|positive regulation of macrophage activation|positive regulation of macrophage cytokine production|positive regulation of mesenchymal cell proliferation|positive regulation of neuron projection development|positive regulation of NF-kappaB transcription factor activity|positive regulation of ossification|positive regulation of protein catabolic process|positive regulation of protein kinase C signaling cascade|positive regulation of T cell chemotaxis|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of type I interferon-mediated signaling pathway|primitive streak formation|regulation of branching involved in mammary gland duct morphogenesis|somitogenesis|tail morphogenesis|type B pancreatic cell development|urinary bladder development|uterus development|vagina development|Wnt receptor signaling pathway, calcium modulating pathway|wound healing	extracellular space|membrane fraction|plasma membrane|proteinaceous extracellular matrix	frizzled binding|frizzled-2 binding|receptor tyrosine kinase-like orphan receptor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding				0				KIRC - Kidney renal clear cell carcinoma(284;0.00377)|Kidney(284;0.00408)|OV - Ovarian serous cystadenocarcinoma(275;0.204)		CGTGCCCAGCGAGCCGGTGCT	0.627													26	20					0	0	0.006320	0	0
ERC2	26059	broad.mit.edu	37	3	56026215	56026215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:56026215C>T	uc003dhr.1	-	11	2381	c.2125G>A	c.(2125-2127)GAT>AAT	p.D709N	ERC2_uc003dht.1_Missense_Mutation_p.D192N	NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	709	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCCTCTTTATCGAGCTGTTTT	0.448													98	112					0	0	0.003610	0	0
ERC2	26059	broad.mit.edu	37	3	56330152	56330152	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:56330152C>T	uc003dhr.1	-	3	1225	c.969G>A	c.(967-969)GAG>GAA	p.E323E		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	323	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		CATTGTCATCCTCCAGGCTTT	0.443													94	100					0	0	0.003610	0	0
ERC2	26059	broad.mit.edu	37	3	56330423	56330423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:56330423C>T	uc003dhr.1	-	3	954	c.698G>A	c.(697-699)CGA>CAA	p.R233Q		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	233	Potential.					cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		TCTCTGGGTTCGCAGCTCATC	0.522													10	32					0	0	0.006214	0	0
CCDC66	285331	broad.mit.edu	37	3	56651388	56651388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:56651388C>T	uc003dhz.2	+	14	2179	c.2092C>T	c.(2092-2094)CCT>TCT	p.P698S	CCDC66_uc003dhy.2_Missense_Mutation_p.P334S|CCDC66_uc003dhu.2_Missense_Mutation_p.P664S|CCDC66_uc003dhx.2_RNA|CCDC66_uc003dia.2_Missense_Mutation_p.P66S	NM_001141947	NP_001135419	A2RUB6	CCD66_HUMAN	coiled-coil domain containing 66 isoform 1	698										breast(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0478)|Kidney(284;0.0597)|OV - Ovarian serous cystadenocarcinoma(275;0.233)		GAAGAAATATCCTAAAAGGCC	0.348													10	43					0	0	0.001368	0	0
FLNB	2317	broad.mit.edu	37	3	58135686	58135686	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:58135686G>A	uc003djj.2	+	37	6366	c.6201G>A	c.(6199-6201)GGG>GGA	p.G2067G	FLNB_uc010hne.2_Silent_p.G2098G|FLNB_uc003djk.2_Silent_p.G2056G|FLNB_uc010hnf.2_Silent_p.G2043G|FLNB_uc003djl.2_Silent_p.G1887G|FLNB_uc003djm.2_Silent_p.G1874G|FLNB_uc010hng.1_RNA	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2067	Interaction with FLNA 1.|Filamin 19.|Interaction with the cytoplasmic tail of GP1BA.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCGTGCCTGGGGTTTATATCG	0.547													60	68					0	0	0.003610	0	0
ACOX2	8309	broad.mit.edu	37	3	58519210	58519210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:58519210C>T	uc003dkl.2	-	5	720	c.545G>A	c.(544-546)AGC>AAC	p.S182N		NM_003500	NP_003491	Q99424	ACOX2_HUMAN	acyl-Coenzyme A oxidase 2	182					bile acid biosynthetic process|fatty acid beta-oxidation using acyl-CoA oxidase	peroxisomal matrix	3alpha,7alpha,12alpha-trihydroxy-5beta-cholestanoyl-CoA 24-hydroxylase activity|acyl-CoA dehydrogenase activity|pristanoyl-CoA oxidase activity				0				BRCA - Breast invasive adenocarcinoma(55;0.000194)|Kidney(10;0.00255)|KIRC - Kidney renal clear cell carcinoma(10;0.00268)|OV - Ovarian serous cystadenocarcinoma(275;0.156)		CAGCGTGGGGCTGTGTATCAC	0.488											OREG0015638	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	15	64					0	0	0.003163	0	0
C3orf67	200844	broad.mit.edu	37	3	58853583	58853583	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:58853583C>T	uc003dkt.1	-	10	1129	c.720G>A	c.(718-720)CGG>CGA	p.R240R	C3orf67_uc003dks.1_Silent_p.R55R|uc003dku.1_Intron|C3orf67_uc003dkv.1_Silent_p.R55R|C3orf67_uc003dkw.2_Silent_p.R135R	NM_198463	NP_940865	Q6ZVT6	CC067_HUMAN	hypothetical protein LOC200844	240											0		all_cancers(2;0.000156)|all_epithelial(2;0.000493)|Breast(2;0.00446)|all_lung(2;0.074)|Lung NSC(2;0.248)		BRCA - Breast invasive adenocarcinoma(55;5.93e-06)|Kidney(10;0.00155)|KIRC - Kidney renal clear cell carcinoma(10;0.00172)|OV - Ovarian serous cystadenocarcinoma(275;0.23)		TACTTTTTAACCGTAATCTTC	0.388													19	76					0	0	0.001882	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64635377	64635378	+	Missense_Mutation	DNP	AG	CA	CA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:64635377_64635378AG>CA	uc003dmg.2	-	10	1572_1573	c.1540_1541CT>TG	c.(1540-1542)CTT>TGT	p.L514C	ADAMTS9_uc011bfo.1_Missense_Mutation_p.L486C|ADAMTS9_uc003dmh.1_Missense_Mutation_p.L343C|ADAMTS9_uc003dmk.1_Missense_Mutation_p.L514C	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	514	Disintegrin.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CACGTTGTAAAGGATGCCTGGC	0.47													181	283					0	0	0.004672	0	0
MAGI1	9223	broad.mit.edu	37	3	65479288	65479288	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:65479288C>T	uc003dmn.2	-	3	975	c.449G>A	c.(448-450)AGA>AAA	p.R150K	MAGI1_uc003dmm.2_Missense_Mutation_p.R150K|MAGI1_uc003dmo.2_Missense_Mutation_p.R150K|MAGI1_uc003dmp.2_Missense_Mutation_p.R150K|MAGI1_uc010hny.2_Missense_Mutation_p.R34K|MAGI1_uc003dmr.2_Missense_Mutation_p.R150K	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	150	Guanylate kinase-like.				cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		TTCTCCTTCTCTGGGAGATCG	0.458													16	17					0	0	0.006122	0	0
PDZRN3	23024	broad.mit.edu	37	3	73432954	73432954	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:73432954C>T	uc003dpl.1	-	10	2859	c.2763G>A	c.(2761-2763)TGG>TGA	p.W921*	PDZRN3_uc011bgh.1_Nonsense_Mutation_p.W578*|PDZRN3_uc010hoe.1_Nonsense_Mutation_p.W619*|PDZRN3_uc011bgf.1_Nonsense_Mutation_p.W638*|PDZRN3_uc011bgg.1_Nonsense_Mutation_p.W641*	NM_015009	NP_055824	Q9UPQ7	PZRN3_HUMAN	PDZ domain containing ring finger 3	921							ubiquitin-protein ligase activity|zinc ion binding			pancreas(2)|ovary(2)|skin(2)|large_intestine(1)	7		Prostate(10;0.114)|Lung NSC(201;0.187)|Lung SC(41;0.236)		BRCA - Breast invasive adenocarcinoma(55;0.00041)|Epithelial(33;0.0023)|LUSC - Lung squamous cell carcinoma(21;0.0048)|Lung(16;0.0105)|KIRC - Kidney renal clear cell carcinoma(39;0.111)|Kidney(39;0.134)		TCTTCACCTTCCACTCCATGC	0.662													10	24					0	0	0.001368	0	0
CNTN3	5067	broad.mit.edu	37	3	74383907	74383907	+	Silent	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:74383907A>C	uc003dpm.1	-	12	1727	c.1647T>G	c.(1645-1647)TCT>TCG	p.S549S		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	549	Ig-like C2-type 6.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TCTCAAAGTGAGATCCATCTT	0.294													23	24					0	0	0.005443	0	0
CNTN3	5067	broad.mit.edu	37	3	74535700	74535700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:74535700G>A	uc003dpm.1	-	3	345	c.265C>T	c.(265-267)CCC>TCC	p.P89S		NM_020872	NP_065923	Q9P232	CNTN3_HUMAN	contactin 3 precursor	89	Ig-like C2-type 1.				cell adhesion	anchored to membrane|plasma membrane	protein binding			breast(3)|ovary(1)|skin(1)	5		Lung NSC(201;0.138)|Lung SC(41;0.21)		Epithelial(33;0.00212)|BRCA - Breast invasive adenocarcinoma(55;0.00258)|LUSC - Lung squamous cell carcinoma(21;0.00461)|Lung(16;0.01)		TTTCTGTTGGGATTAATAACC	0.358													29	31					0	0	0.007291	0	0
ROBO2	6092	broad.mit.edu	37	3	77147229	77147229	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:77147229C>T	uc003dpy.3	+	2	769	c.126C>T	c.(124-126)GTC>GTT	p.V42V	ROBO2_uc003dpz.2_Silent_p.V42V|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.V42V	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	42	Ig-like C2-type 1.|Extracellular (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		ATGTCATCGTCTCTAAGGGCG	0.557													8	7					0	0	0.006214	0	0
PROS1	5627	broad.mit.edu	37	3	93611862	93611862	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:93611862C>T	uc003drb.3	-	10	1411	c.1070G>A	c.(1069-1071)GGA>GAA	p.G357E	PROS1_uc010hoo.2_Missense_Mutation_p.G226E|PROS1_uc003dqz.3_Missense_Mutation_p.G226E	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	357	Laminin G-like 1.		G -> R (in PROS1D).		leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	TTCAATCTTTCCACCACGAAG	0.403													36	33					0	0	0.004289	0	0
OR5H1	26341	broad.mit.edu	37	3	97851900	97851900	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:97851900A>G	uc011bgt.1	+	1	359	c.359A>G	c.(358-360)TAT>TGT	p.Y120C		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	120	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						ACGATGGCATATGATCGCTAT	0.393													3	191					0	0	0.004672	0	0
OR5H1	26341	broad.mit.edu	37	3	97852023	97852023	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:97852023G>A	uc011bgt.1	+	1	482	c.482G>A	c.(481-483)GGA>GAA	p.G161E		NM_001005338	NP_001005338	A6NKK0	OR5H1_HUMAN	olfactory receptor, family 5, subfamily H,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						ATCCATGAAGGATTTTTATTC	0.353													8	72					0	0	0.002780	0	0
COL8A1	1295	broad.mit.edu	37	3	99513179	99513179	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:99513179T>A	uc003dtg.1	+	5	679	c.434T>A	c.(433-435)ATT>AAT	p.I145N	COL8A1_uc003dth.1_Missense_Mutation_p.I145N|COL8A1_uc003dti.1_Missense_Mutation_p.I146N	NM_001850	NP_001841	P27658	CO8A1_HUMAN	alpha 1 type VIII collagen precursor	145	Triple-helical region (COL1).				angiogenesis|cell adhesion	basement membrane|collagen type VIII					0						ATACCTGGAATTAAAGGAAAA	0.582													8	10					0	0	0.003080	0	0
C3orf26	84319	broad.mit.edu	37	3	99886587	99886587	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:99886587C>T	uc003dtl.2	+	6	564	c.421C>T	c.(421-423)CCT>TCT	p.P141S		NM_032359	NP_115735	Q9BQ75	CC026_HUMAN	hypothetical protein LOC84319	141							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(1)	1						TCCAGTTTGTCCTAAGTGGGT	0.423													23	71					0	0	0.004656	0	0
GPR128	84873	broad.mit.edu	37	3	100373774	100373774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:100373774C>T	uc003duc.2	+	12	1743	c.1475C>T	c.(1474-1476)TCC>TTC	p.S492F	GPR128_uc011bhc.1_Missense_Mutation_p.S193F|GPR128_uc003dud.2_Missense_Mutation_p.S15F	NM_032787	NP_116176	Q96K78	GP128_HUMAN	G protein-coupled receptor 128 precursor	492	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(1)	4						ATTGAAAACTCCAATAAGAAC	0.383													27	40					0	0	0.006320	0	0
CEP97	79598	broad.mit.edu	37	3	101476030	101476030	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:101476030C>T	uc003dvk.1	+	8	1044	c.1017C>T	c.(1015-1017)TCC>TCT	p.S339S	CEP97_uc010hpm.1_Silent_p.S305S|CEP97_uc011bhf.1_Silent_p.S339S|CEP97_uc003dvl.1_Silent_p.S35S|CEP97_uc003dvm.1_Silent_p.S177S	NM_024548	NP_078824	Q8IW35	CEP97_HUMAN	centrosomal protein 97kDa	339	CEP110 binding.					centrosome|nucleus	protein binding			ovary(2)	2						GCCAGATATCCCAGGAAAGTG	0.388													13	53					0	0	0.002450	0	0
ZPLD1	131368	broad.mit.edu	37	3	102175049	102175049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:102175049C>T	uc003dvs.1	+	11	1222	c.340C>T	c.(340-342)CCT>TCT	p.P114S	ZPLD1_uc003dvt.1_Missense_Mutation_p.P130S|ZPLD1_uc011bhg.1_Missense_Mutation_p.P114S	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	114	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						ATCCACAATTCCTGGAGTCAG	0.348													9	48					0	0	0.004482	0	0
MORC1	27136	broad.mit.edu	37	3	108724021	108724021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:108724021C>T	uc003dxl.2	-	19	1996	c.1909G>A	c.(1909-1911)GAA>AAA	p.E637K	MORC1_uc011bhn.1_Missense_Mutation_p.E616K	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	637					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						ATTTTTGTTTCTGAAATATAC	0.388													39	42					0	0	0.005524	0	0
DPPA4	55211	broad.mit.edu	37	3	109050768	109050768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:109050768C>T	uc003dxq.3	-	3	344	c.289G>A	c.(289-291)GAC>AAC	p.D97N	DPPA4_uc011bho.1_Missense_Mutation_p.D97N|DPPA4_uc011bhp.1_Missense_Mutation_p.D97N	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	97						nucleus	protein binding			upper_aerodigestive_tract(1)	1						CGCAGAATGTCCCGGTGAATC	0.537													9	55					0	0	0.000978	0	0
DPPA4	55211	broad.mit.edu	37	3	109052816	109052816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:109052816C>T	uc003dxq.3	-	2	134	c.79G>A	c.(79-81)GAA>AAA	p.E27K	DPPA4_uc011bho.1_Missense_Mutation_p.E27K|DPPA4_uc011bhp.1_Missense_Mutation_p.E27K	NM_018189	NP_060659	Q7L190	DPPA4_HUMAN	developmental pluripotency associated 4	27						nucleus	protein binding			upper_aerodigestive_tract(1)	1						TGATCCTCTTCCCTCGACTTC	0.458													18	24					0	0	0.007413	0	0
PLCXD2	257068	broad.mit.edu	37	3	111432825	111432825	+	Missense_Mutation	SNP	G	C	C	rs146970589	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:111432825G>C	uc003dya.2	+	3	1302	c.716G>C	c.(715-717)AGT>ACT	p.S239T	PLCXD2_uc003dyb.2_Missense_Mutation_p.S239T|PLCXD2_uc003dxz.2_Missense_Mutation_p.S239T	NM_001134478	NP_001127950	Q0VAA5	PLCX2_HUMAN	phosphatidylinositol-specific phospholipase C, X	239					intracellular signal transduction|lipid catabolic process		phospholipase C activity|signal transducer activity			skin(1)	1						AACACCACAAGTGTGCGCAAA	0.532													10	31					0	0	0.008291	0	0
PHLDB2	90102	broad.mit.edu	37	3	111604120	111604120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:111604120G>A	uc010hqa.2	+	2	1607	c.1196G>A	c.(1195-1197)AGA>AAA	p.R399K	PHLDB2_uc003dyc.2_Missense_Mutation_p.R426K|PHLDB2_uc003dyd.2_Missense_Mutation_p.R399K|PHLDB2_uc003dyg.2_Missense_Mutation_p.R399K|PHLDB2_uc003dyh.2_Missense_Mutation_p.R399K|PHLDB2_uc003dye.3_Missense_Mutation_p.R399K|PHLDB2_uc003dyf.3_Missense_Mutation_p.R399K	NM_001134438	NP_001127910	Q86SQ0	PHLB2_HUMAN	pleckstrin homology-like domain, family B,	399						cytoplasm|intermediate filament cytoskeleton|plasma membrane				ovary(4)|skin(2)	6						GAAAGCCTCAGACAGGCCTCA	0.517													39	40					0	0	0.006230	0	0
TMPRSS7	344805	broad.mit.edu	37	3	111766691	111766691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:111766691C>T	uc010hqb.2	+	5	628	c.458C>T	c.(457-459)GCC>GTC	p.A153V	TMPRSS7_uc011bhr.1_Missense_Mutation_p.A8V	NM_001042575	NP_001036040	Q7RTY8	TMPS7_HUMAN	transmembrane protease, serine 7	279	Extracellular (Potential).|CUB 1.				proteolysis	integral to membrane|plasma membrane	serine-type endopeptidase activity			ovary(1)|kidney(1)	2						AAGCTGGTGGCCATAGTGGGC	0.527													13	48					0	0	0.002450	0	0
CD200R1L	344807	broad.mit.edu	37	3	112546248	112546248	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:112546248C>T	uc003dzi.1	-	3	622	c.396G>A	c.(394-396)GGG>GGA	p.G132G	CD200R1L_uc011bhw.1_Silent_p.G111G|CD200R1L_uc010hqf.1_Silent_p.G111G	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	132	Ig-like V-type.|Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						GATGGAAATTCCCATCAGGTG	0.463													37	45					0	0	0.006999	0	0
C3orf17	25871	broad.mit.edu	37	3	112732175	112732175	+	Silent	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:112732175A>C	uc003dzr.2	-	4	478	c.417T>G	c.(415-417)GTT>GTG	p.V139V	GTPBP8_uc011bhy.1_Intron|C3orf17_uc011bhz.1_Intron|C3orf17_uc010hqh.2_Intron|C3orf17_uc003dzt.2_Silent_p.V42V|C3orf17_uc003dzs.2_Silent_p.V3V|C3orf17_uc010hqg.2_5'UTR|C3orf17_uc011bia.1_Missense_Mutation_p.F17V|C3orf17_uc003dzu.2_Intron|C3orf17_uc011bib.1_Silent_p.V28V|C3orf17_uc011bic.1_Intron|C3orf17_uc011bid.1_Intron	NM_015412	NP_056227	Q6NW34	CC017_HUMAN	hypothetical protein LOC25871	139						integral to membrane					0						AGGCTCCCAAAACCTTCATCA	0.398													29	43					0	0	0.001786	0	0
BOC	91653	broad.mit.edu	37	3	113003232	113003233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:113003232_113003233CC>TT	uc003dzx.2	+	17	3325_3326	c.2704_2705CC>TT	c.(2704-2706)CCG>TTG	p.P902L	BOC_uc003dzy.2_Missense_Mutation_p.P902L|BOC_uc003dzz.2_Missense_Mutation_p.P903L|BOC_uc003eab.2_Missense_Mutation_p.P603L|BOC_uc003eac.2_Missense_Mutation_p.P217L	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	902	Cytoplasmic (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			ACCCTCCTGCCCGTATACTATG	0.564													41	40					0	0	0.004672	0	0
TIGIT	201633	broad.mit.edu	37	3	114014596	114014596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:114014596C>T	uc003ebg.1	+	2	300	c.266C>T	c.(265-267)CCC>CTC	p.P89L		NM_173799	NP_776160	Q495A1	TIGIT_HUMAN	T cell immunoreceptor with Ig and ITIM domains	89	Extracellular (Potential).|Ig-like V-type.				negative regulation of interleukin-12 production|negative regulation of T cell activation|positive regulation of interleukin-10 production	cell surface|integral to membrane|plasma membrane	protein binding			central_nervous_system(1)	1						GCCCCAGGTCCCGGCCTGGGC	0.582													15	25					0	0	0.006122	0	0
PLA1A	51365	broad.mit.edu	37	3	119343987	119343987	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:119343987G>A	uc003ecu.2	+	9	1068	c.1029G>A	c.(1027-1029)GTG>GTA	p.V343V	PLA1A_uc003ecv.2_Silent_p.V327V|PLA1A_uc003ecw.2_RNA|PLA1A_uc011bjc.1_Silent_p.V170V	NM_015900	NP_056984	Q53H76	PLA1A_HUMAN	phospholipase A1 member A precursor	343					lipid catabolic process|phosphatidylserine metabolic process	extracellular region	phospholipase A1 activity	p.V343L(1)		upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)	3						ACAGCCTCGTGGAGTTTCACT	0.333													13	21					0	0	0.001855	0	0
NR1I2	8856	broad.mit.edu	37	3	119533863	119533863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:119533863G>A	uc003edj.2	+	6	2671	c.832G>A	c.(832-834)GGG>AGG	p.G278R	NR1I2_uc003edi.2_Missense_Mutation_p.G241R|NR1I2_uc003edk.2_Missense_Mutation_p.G317R|NR1I2_uc003edl.2_Missense_Mutation_p.G166R	NM_003889	NP_003880	O75469	NR1I2_HUMAN	nuclear receptor subfamily 1, group I, member 2	278	Ligand-binding.				drug export|exogenous drug catabolic process|negative regulation of transcription, DNA-dependent|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|steroid metabolic process|xenobiotic metabolic process|xenobiotic transport	nucleoplasm	drug binding|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|steroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(114;0.175)	Estradiol(DB00783)|Ethinyl Estradiol(DB00977)|Rifampin(DB01045)|Vitamin E(DB00163)	CCTGCTGAAGGGGGCCGCTTT	0.612													15	23					0	0	0.003163	0	0
GSK3B	2932	broad.mit.edu	37	3	119634959	119634960	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:119634959_119634960CC>TT	uc003edo.2	-	5	1522_1523	c.539_540GG>AA	c.(538-540)CGG>CAA	p.R180Q	GSK3B_uc003edn.2_Missense_Mutation_p.R180Q	NM_001146156	NP_001139628	P49841	GSK3B_HUMAN	glycogen synthase kinase 3 beta isoform 2	180	Protein kinase.				axon guidance|epithelial to mesenchymal transition|ER overload response|glycogen metabolic process|hippocampus development|negative regulation of apoptosis|negative regulation of protein binding|negative regulation of protein complex assembly|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|phosphatidylinositol-mediated signaling|positive regulation of cell-matrix adhesion|positive regulation of protein complex assembly|positive regulation of protein export from nucleus|positive regulation of Rac GTPase activity|regulation of microtubule-based process|superior temporal gyrus development	Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|nucleus|plasma membrane	ATP binding|beta-catenin binding|NF-kappaB binding|p53 binding|protein kinase A catalytic subunit binding|protein serine/threonine kinase activity|RNA polymerase II transcription factor binding|tau-protein kinase activity|ubiquitin protein ligase binding			lung(2)	2				GBM - Glioblastoma multiforme(114;0.24)	Lithium(DB01356)	GTTTAATATCCCGATGGCAGAT	0.406													31	45					0	0	0.004672	0	0
GPR156	165829	broad.mit.edu	37	3	119886636	119886636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:119886636G>A	uc011bjf.1	-	9	1688	c.1688C>T	c.(1687-1689)TCC>TTC	p.S563F	GPR156_uc011bjg.1_Missense_Mutation_p.S559F	NM_153002	NP_694547	Q8NFN8	GP156_HUMAN	G protein-coupled receptor 156	563	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity|GABA-B receptor activity			ovary(1)|skin(1)	2				GBM - Glioblastoma multiforme(114;0.19)		GGTGGAGAGGGAAGCCTCAGG	0.582													31	30					0	0	0.001786	0	0
FBXO40	51725	broad.mit.edu	37	3	121341642	121341642	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:121341642C>T	uc003eeg.2	+	3	1576	c.1366C>T	c.(1366-1368)CAC>TAC	p.H456Y		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	456					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AGGGGGACTCCACGTGGAGCT	0.522													5	29					0	0	0.001168	0	0
SLC15A2	6565	broad.mit.edu	37	3	121616367	121616367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:121616367G>A	uc003eep.2	+	3	479	c.326G>A	c.(325-327)GGA>GAA	p.G109E	SLC15A2_uc011bjn.1_Missense_Mutation_p.G109E	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	109					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	TCGTGGTTGGGAAAATTCAAG	0.458													34	36					0	0	0.002445	0	0
CASR	846	broad.mit.edu	37	3	121980560	121980560	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:121980560C>T	uc003eev.3	+	4	1050	c.678C>T	c.(676-678)TTC>TTT	p.F226F	CASR_uc003eew.3_Silent_p.F226F	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	226	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	TTGAGAAATTCCGAGAGGAAG	0.522													44	69					0	0	0.002522	0	0
CASR	846	broad.mit.edu	37	3	121981226	121981226	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:121981226C>T	uc003eev.3	+	4	1716	c.1344C>T	c.(1342-1344)TCC>TCT	p.S448S	CASR_uc003eew.3_Silent_p.S448S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	448	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CCAATGGCTCCTGTGCAGACA	0.473													18	76					0	0	0.007413	0	0
CASR	846	broad.mit.edu	37	3	122001041	122001041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:122001041G>A	uc003eev.3	+	6	2062	c.1690G>A	c.(1690-1692)GAG>AAG	p.E564K	CASR_uc003eew.3_Missense_Mutation_p.E574K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	564	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	CTGCTGCTTTGAGTGTGTGGA	0.597													14	60					0	0	0.004990	0	0
CASR	846	broad.mit.edu	37	3	122002604	122002604	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:122002604G>A	uc003eev.3	+	7	2175	c.1803G>A	c.(1801-1803)AAG>AAA	p.K601K	CASR_uc003eew.3_Silent_p.K611K	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	601	Extracellular (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	GCATTGCCAAGGAGATCGAGT	0.517													36	32					0	0	0.006999	0	0
SEMA5B	54437	broad.mit.edu	37	3	122646731	122646731	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:122646731G>A	uc003efz.1	-	8	1060	c.756C>T	c.(754-756)GTC>GTT	p.V252V	SEMA5B_uc011bju.1_Silent_p.V194V|SEMA5B_uc003ega.1_RNA|SEMA5B_uc003egb.1_Silent_p.V252V|SEMA5B_uc010hro.1_Silent_p.V194V|SEMA5B_uc010hrp.1_RNA	NM_001031702	NP_001026872	Q9P283	SEM5B_HUMAN	semaphorin 5B isoform 1	252	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			ovary(2)|breast(2)|pancreas(2)|central_nervous_system(1)	7				GBM - Glioblastoma multiforme(114;0.0367)		AGAAGTCGATGACCGTGGCTG	0.587													23	27					0	0	0.002299	0	0
PLXNA1	5361	broad.mit.edu	37	3	126708045	126708045	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:126708045C>T	uc003ejg.2	+	1	544	c.540C>T	c.(538-540)AGC>AGT	p.S180S		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	203	Sema.|Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		CACTGTCCAGCCGTCGGCTCA	0.617													7	38					0	0	0.004482	0	0
PLXNA1	5361	broad.mit.edu	37	3	126730864	126730864	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:126730864A>C	uc003ejg.2	+	9	2111	c.2107A>C	c.(2107-2109)ACC>CCC	p.T703P		NM_032242	NP_115618	Q9UIW2	PLXA1_HUMAN	plexin A1	726	Extracellular (Potential).				axon guidance	integral to membrane|intracellular|plasma membrane	semaphorin receptor activity			ovary(1)|pancreas(1)|skin(1)	3				GBM - Glioblastoma multiforme(114;0.155)		AAAACCCATCACCCTGGCCGC	0.652													7	31					0	0	0.000978	0	0
MCM2	4171	broad.mit.edu	37	3	127325561	127325561	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:127325561C>T	uc003ejp.2	+	6	1059	c.1002C>T	c.(1000-1002)TTC>TTT	p.F334F	MCM2_uc011bkm.1_Silent_p.F204F|MCM2_uc010hsl.2_RNA|MCM2_uc011bkn.1_Silent_p.F218F	NM_004526	NP_004517	P49736	MCM2_HUMAN	minichromosome maintenance complex component 2	334	C4-type (Potential).				cell cycle checkpoint|DNA strand elongation involved in DNA replication|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|S phase of mitotic cell cycle	chromatin|MCM complex	ATP binding|helicase activity|metal ion binding			ovary(3)|skin(1)	4						AGTGCAATTTCGTCCTGGGTC	0.592													42	31					0	0	0.003214	0	0
KBTBD12	166348	broad.mit.edu	37	3	127642489	127642489	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:127642489G>A	uc010hsr.2	+	1	588	c.585G>A	c.(583-585)CTG>CTA	p.L195L	KBTBD12_uc003ejy.3_Intron|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Intron|KBTBD12_uc003ejz.2_Silent_p.L195L	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	195	BACK.									ovary(1)	1						AGAGCATTCTGGACTTAGTTC	0.358													19	21					0	0	0.007413	0	0
DNAJB8	165721	broad.mit.edu	37	3	128182073	128182073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:128182073C>T	uc003ekk.1	-	3	1677	c.16G>A	c.(16-18)GAA>AAA	p.E6K	uc003ekl.1_5'Flank	NM_153330	NP_699161	Q8NHS0	DNJB8_HUMAN	DnaJ homolog, subfamily B, member 8	6	J.				protein folding		heat shock protein binding|unfolded protein binding				0				GBM - Glioblastoma multiforme(114;0.177)		CCCAGCACTTCGTAGTAGTTA	0.627													18	52					0	0	0.001882	0	0
COL6A6	131873	broad.mit.edu	37	3	130287203	130287203	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:130287203G>C	uc010htl.2	+	5	2187	c.2156G>C	c.(2155-2157)CGG>CCG	p.R719P		NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	719	Nonhelical region.|VWFA 4.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						AAGGGCGCCCGGCCCAACATC	0.502													35	43					0	0	0.003271	0	0
NEK11	79858	broad.mit.edu	37	3	130881365	130881365	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:130881365A>G	uc003eny.2	+	11	1402	c.1076A>G	c.(1075-1077)AAG>AGG	p.K359R	NEK11_uc003enx.2_Missense_Mutation_p.K359R|NEK11_uc003eoa.2_Missense_Mutation_p.K359R|NEK11_uc003enz.2_Missense_Mutation_p.K177R|NEK11_uc010htn.2_RNA|NEK11_uc011blk.1_Missense_Mutation_p.K211R|NEK11_uc011bll.1_Missense_Mutation_p.K254R|NEK11_uc011blm.1_Missense_Mutation_p.K359R	NM_024800	NP_079076	Q8NG66	NEK11_HUMAN	NIMA-related kinase 11 isoform 1	359	Potential.				cell cycle|intra-S DNA damage checkpoint|intracellular protein kinase cascade	nucleolus	ATP binding|identical protein binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(4)|stomach(1)|central_nervous_system(1)	6						AAAGCCAGGAAGCTGAAGTAA	0.498													40	44					0	0	0.006999	0	0
CPNE4	131034	broad.mit.edu	37	3	131624108	131624108	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:131624108C>T	uc003eok.2	-	2	615	c.180G>A	c.(178-180)GAG>GAA	p.E60E	CPNE4_uc011blq.1_Silent_p.E78E|CPNE4_uc003eol.2_Silent_p.E78E|CPNE4_uc003eom.2_Silent_p.E60E	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	60	C2 1.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						ACATGCCTACCTCAAACCACT	0.438													46	50					0	0	0.003610	0	0
ACPP	55	broad.mit.edu	37	3	132051046	132051046	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:132051046G>A	uc010htp.2	+	4	404	c.314G>A	c.(313-315)CGA>CAA	p.R105Q	ACPP_uc003eon.3_Missense_Mutation_p.R105Q|ACPP_uc003eop.3_Missense_Mutation_p.R105Q	NM_001099	NP_001090	P15309	PPAP_HUMAN	acid phosphatase, prostate short isoform	105						extracellular region|lysosomal membrane	5'-nucleotidase activity|acid phosphatase activity			ovary(1)	1						GTTTATATTCGAAGCACAGAC	0.463													63	74					0	0	0.003610	0	0
RASA2	5922	broad.mit.edu	37	3	141328325	141328326	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:141328325_141328326CC>TT	uc003etz.1	+	22	2289_2290	c.2289_2290CC>TT	c.(2287-2292)TCCCTT>TCTTTT	p.L764F	RASA2_uc010huq.1_Missense_Mutation_p.L768F|RASA2_uc003eua.1_Missense_Mutation_p.L765F	NM_006506	NP_006497	Q15283	RASA2_HUMAN	RAS p21 protein activator 2	764					intracellular signal transduction|negative regulation of Ras protein signal transduction	intracellular membrane-bounded organelle|intrinsic to internal side of plasma membrane|perinuclear region of cytoplasm	metal ion binding|Ras GTPase activator activity			ovary(2)|lung(2)|breast(1)|skin(1)	6						GAATTTATTCCCTTTTTACCCT	0.282													15	65					0	0	0.004672	0	0
XRN1	54464	broad.mit.edu	37	3	142102197	142102198	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:142102197_142102198GG>AA	uc003eus.2	-	22	2627_2628	c.2560_2561CC>TT	c.(2560-2562)CCT>TTT	p.P854F	XRN1_uc010huu.2_Missense_Mutation_p.P320F|XRN1_uc003eut.2_Missense_Mutation_p.P854F|XRN1_uc003euu.2_Missense_Mutation_p.P854F|XRN1_uc003euv.1_Missense_Mutation_p.P715F	NM_019001	NP_061874	Q8IZH2	XRN1_HUMAN	5'-3' exoribonuclease 1 isoform a	854					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear mRNA surveillance|rRNA catabolic process	cytosol|Golgi apparatus|intermediate filament cytoskeleton|plasma membrane	5'-3' exonuclease activity|DNA binding|protein binding|RNA binding			ovary(3)	3						ACTTCTCAGAGGAAACAAATCA	0.337													15	26					0	0	0.004672	0	0
CHST2	9435	broad.mit.edu	37	3	142840860	142840860	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:142840860G>T	uc003evm.2	+	2	2091	c.1202G>T	c.(1201-1203)AGT>ATT	p.S401I		NM_004267	NP_004258	Q9Y4C5	CHST2_HUMAN	carbohydrate (N-acetylglucosamine-6-O)	401	Lumenal (Potential).				inflammatory response|multicellular organismal development|N-acetylglucosamine metabolic process|sulfur compound metabolic process	integral to membrane|intrinsic to Golgi membrane|trans-Golgi network	N-acetylglucosamine 6-O-sulfotransferase activity			ovary(3)	3						ATCTGCAATAGTATGGCTAAG	0.652													20	27					2.70639e-06	3.8e-06	0.002299	1	0
CP	1356	broad.mit.edu	37	3	148905923	148905923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:148905923C>T	uc003ewy.3	-	10	2033	c.1780G>A	c.(1780-1782)GAA>AAA	p.E594K	CP_uc011bnr.1_RNA|CP_uc003ewx.3_Missense_Mutation_p.E375K|CP_uc003ewz.2_Missense_Mutation_p.E594K|CP_uc010hvf.1_Missense_Mutation_p.E320K	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	594	Plastocyanin-like 4.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	ATATTATCTTCCAGGAGTAAA	0.338													32	80					0	0	0.002445	0	0
TM4SF4	7104	broad.mit.edu	37	3	149216568	149216568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:149216568C>T	uc003exd.1	+	4	692	c.461C>T	c.(460-462)CCC>CTC	p.P154L		NM_004617	NP_004608	P48230	T4S4_HUMAN	transmembrane 4 superfamily member 4	154	Extracellular (Potential).					integral to membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			AATGTGGTTCCCTGGAATCTG	0.507													6	33					0	0	0.001168	0	0
MED12L	116931	broad.mit.edu	37	3	150903248	150903248	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:150903248G>A	uc003eyp.2	+	11	1664	c.1626G>A	c.(1624-1626)GAG>GAA	p.E542E	MED12L_uc011bnz.1_Silent_p.E402E|MED12L_uc003eyn.2_Silent_p.E542E|MED12L_uc003eyo.2_Silent_p.E542E	NM_053002	NP_443728	Q86YW9	MD12L_HUMAN	mediator of RNA polymerase II transcription,	542					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex				ovary(4)|large_intestine(1)|central_nervous_system(1)|skin(1)	7			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			TTGAGGCAGAGGTAGGTTCCA	0.443													15	12					0	0	0.004990	0	0
IGSF10	285313	broad.mit.edu	37	3	151165794	151165794	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:151165794G>A	uc011bod.1	-	4	1975	c.1975C>T	c.(1975-1977)CAA>TAA	p.Q659*		NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	659	Ig-like C2-type 2.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			ACTGAAACTTGGAAAATCAAA	0.433													17	56					0	0	0.004007	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598433	151598433	+	Silent	SNP	C	T	T	rs145165680		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:151598433C>T	uc003ezf.1	+	3	201	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	34	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	GGATTGAGTTCGTTGTGGGAG	0.423													40	126					0	0	0.002222	0	0
SGEF	26084	broad.mit.edu	37	3	153909092	153909092	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:153909092C>T	uc011bog.1	+	8	1866	c.1655C>T	c.(1654-1656)TCC>TTC	p.S552F	SGEF_uc011boh.1_Missense_Mutation_p.S552F	NM_015595	NP_056410	Q96DR7	ARHGQ_HUMAN	Src homology 3 domain-containing guanine	552	DH.				regulation of Rho protein signal transduction	intracellular|ruffle	Rho guanyl-nucleotide exchange factor activity			large_intestine(1)	1			LUSC - Lung squamous cell carcinoma(72;0.114)|Lung(72;0.173)			ACCAATCCATCCTTTAAGGAA	0.393													13	9					0	0	0.003163	0	0
OTOL1	131149	broad.mit.edu	37	3	161220122	161220122	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:161220122G>A	uc011bpb.1	+	3	482	c.482G>A	c.(481-483)GGA>GAA	p.G161E		NM_001080440	NP_001073909	A6NHN0	OTOL1_HUMAN	otolin-1 precursor	161	Collagen-like 1.					collagen					0						GGGGACCAAGGAGTTCCAGGA	0.418													4	18					0	0	0.000248	0	0
SI	6476	broad.mit.edu	37	3	164737500	164737500	+	Missense_Mutation	SNP	G	A	A	rs138397431	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:164737500G>A	uc003fei.2	-	28	3375	c.3313C>T	c.(3313-3315)CGC>TGC	p.R1105C		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	1105	Sucrase.|Lumenal.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	GATGGCAGGCGAGTCGATATT	0.383										HNSCC(35;0.089)			27	37					0	0	0.008361	0	0
SI	6476	broad.mit.edu	37	3	164766919	164766919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:164766919C>T	uc003fei.2	-	15	1773	c.1711G>A	c.(1711-1713)GAG>AAG	p.E571K		NM_001041	NP_001032	P14410	SUIS_HUMAN	sucrase-isomaltase	571	Lumenal.|Isomaltase.				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|brush border|Golgi apparatus|integral to membrane	carbohydrate binding|oligo-1,6-glucosidase activity|sucrose alpha-glucosidase activity			ovary(7)|upper_aerodigestive_tract(4)|skin(2)|pancreas(1)	14		Prostate(884;0.00314)|Melanoma(1037;0.0153)|all_neural(597;0.0199)			Acarbose(DB00284)	ACTTACTGCTCTGTGGCTATA	0.333										HNSCC(35;0.089)			25	18					0	0	0.007291	0	0
SLITRK3	22865	broad.mit.edu	37	3	164906440	164906440	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:164906440G>A	uc003fej.3	-	2	2623	c.2179C>T	c.(2179-2181)CTT>TTT	p.L727F	SLITRK3_uc003fek.2_Missense_Mutation_p.L727F	NM_014926	NP_055741	O94933	SLIK3_HUMAN	slit and trk like 3 protein precursor	727	Cytoplasmic (Potential).					integral to membrane				ovary(6)|skin(3)|pancreas(1)	10						GGAGAGGAAAGAGTTGGTCGa	0.443										HNSCC(40;0.11)			19	12					0	0	0.007413	0	0
ZBBX	79740	broad.mit.edu	37	3	167031835	167031835	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:167031835G>A	uc003fep.2	-	16	1667	c.1344C>T	c.(1342-1344)TTC>TTT	p.F448F	ZBBX_uc011bpc.1_Silent_p.F448F|ZBBX_uc003feq.2_Silent_p.F419F	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	448						intracellular	zinc ion binding			ovary(2)	2						TTCCCTTATCGAAAACATGAT	0.313													33	111					0	0	0.002836	0	0
ZBBX	79740	broad.mit.edu	37	3	167039934	167039934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:167039934C>T	uc003fep.2	-	12	1277	c.954G>A	c.(952-954)ATG>ATA	p.M318I	ZBBX_uc011bpc.1_Missense_Mutation_p.M318I|ZBBX_uc003feq.2_Missense_Mutation_p.M289I	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	318						intracellular	zinc ion binding			ovary(2)	2						ATAATTTTTCCATATAGGATA	0.289													28	31					0	0	0.008361	0	0
WDR49	151790	broad.mit.edu	37	3	167277918	167277918	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:167277918G>A	uc003fev.1	-	5	891	c.585C>T	c.(583-585)ATC>ATT	p.I195I	WDR49_uc003feu.1_Silent_p.I20I|WDR49_uc011bpd.1_Silent_p.I248I|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	195	WD 4.									large_intestine(1)|ovary(1)|skin(1)	3						CCATAGTGCTGATTTCTGCGT	0.458													54	50					0	0	0.003610	0	0
GOLIM4	27333	broad.mit.edu	37	3	167750415	167750415	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:167750415G>A	uc003ffe.2	-	9	1413	c.1069C>T	c.(1069-1071)CTT>TTT	p.L357F	GOLIM4_uc011bpe.1_Missense_Mutation_p.L357F|GOLIM4_uc011bpf.1_Missense_Mutation_p.L329F|GOLIM4_uc011bpg.1_Missense_Mutation_p.L329F	NM_014498	NP_055313	O00461	GOLI4_HUMAN	golgi integral membrane protein 4	357	Glu-rich.|Lumenal (Potential).				transport	cis-Golgi network|endocytic vesicle|endosome membrane|Golgi cisterna membrane|Golgi lumen|integral to membrane|nucleus				breast(4)|skin(1)	5						TCCTCCTCAAGATGTTCTGCT	0.572													27	85					0	0	0.005443	0	0
MECOM	2122	broad.mit.edu	37	3	168833510	168833510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:168833510G>A	uc003ffi.3	-	7	1855	c.1586C>T	c.(1585-1587)TCG>TTG	p.S529L	MECOM_uc010hwk.1_Missense_Mutation_p.S552L|MECOM_uc003ffj.3_Missense_Mutation_p.S594L|MECOM_uc011bpi.1_Missense_Mutation_p.S530L|MECOM_uc003ffn.3_Missense_Mutation_p.S529L|MECOM_uc003ffk.2_Missense_Mutation_p.S529L|MECOM_uc003ffl.2_Missense_Mutation_p.S689L|MECOM_uc011bpj.1_Missense_Mutation_p.S717L|MECOM_uc011bpk.1_Missense_Mutation_p.S519L|MECOM_uc010hwn.2_Missense_Mutation_p.S717L	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	529					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						CAAAGGTAACGATCTCAAGTC	0.438													30	21					0	0	0.006320	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540152	169540152	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:169540152G>A	uc003fgb.2	+	1	443	c.443G>A	c.(442-444)GGA>GAA	p.G148E		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	148	LRR 6.										0						GAGCTGCTCGGACTGACCGGA	0.537													27	23					0	0	0.003954	0	0
SPATA16	83893	broad.mit.edu	37	3	172642058	172642058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:172642058C>T	uc003fin.3	-	8	1436	c.1278G>A	c.(1276-1278)ATG>ATA	p.M426I		NM_031955	NP_114161	Q9BXB7	SPT16_HUMAN	spermatogenesis associated 16	426					cell differentiation|multicellular organismal development|spermatogenesis	Golgi apparatus	binding			ovary(2)|skin(1)	3	Ovarian(172;0.00319)|Breast(254;0.197)		LUSC - Lung squamous cell carcinoma(14;1.48e-14)|Lung(28;6.63e-14)			CCATTGTCTCCATTTGCCTCA	0.338													21	46					0	0	0.003954	0	0
ZNF639	51193	broad.mit.edu	37	3	179051056	179051056	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:179051056G>A	uc003fjq.1	+	6	648	c.305_splice	c.e6-1	p.E102_splice	ZNF639_uc003fjr.1_Splice_Site_p.E102_splice	NM_016331	NP_057415	Q9UID6	ZN639_HUMAN	zinc finger protein 639						initiation of viral infection|negative regulation by host of viral transcription|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of cell growth|positive regulation of transcription, DNA-dependent	nucleus	protein self-association|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|zinc ion binding				0	all_cancers(143;7.9e-17)|Ovarian(172;0.0172)|Breast(254;0.155)		OV - Ovarian serous cystadenocarcinoma(80;5.78e-26)|GBM - Glioblastoma multiforme(14;0.003)|BRCA - Breast invasive adenocarcinoma(182;0.0923)			TTATTCTTCAGAAAAATCTGC	0.318													7	10					0	0	0.001984	0	0
PEX5L	51555	broad.mit.edu	37	3	179537748	179537748	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:179537748C>T	uc003fki.1	-	9	969	c.839G>A	c.(838-840)TGG>TAG	p.W280*	PEX5L_uc011bqd.1_Nonsense_Mutation_p.W237*|PEX5L_uc011bqe.1_Nonsense_Mutation_p.W88*|PEX5L_uc011bqf.1_Nonsense_Mutation_p.W172*|PEX5L_uc003fkj.1_Nonsense_Mutation_p.W245*|PEX5L_uc010hxd.1_Nonsense_Mutation_p.W278*|PEX5L_uc011bqg.1_Nonsense_Mutation_p.W256*|PEX5L_uc011bqh.1_Nonsense_Mutation_p.W221*	NM_016559	NP_057643	Q8IYB4	PEX5R_HUMAN	peroxisomal biogenesis factor 5-like	280					protein import into peroxisome matrix|regulation of cAMP-mediated signaling	cytosol|peroxisomal membrane	peroxisome matrix targeting signal-1 binding			ovary(3)|large_intestine(1)	4	all_cancers(143;3.94e-14)|Ovarian(172;0.0338)|Breast(254;0.183)		OV - Ovarian serous cystadenocarcinoma(80;1.75e-26)|GBM - Glioblastoma multiforme(14;0.000518)			CATCTTATCCCAAAACTCTGT	0.433													12	50					0	0	0.001855	0	0
KLHL6	89857	broad.mit.edu	37	3	183209743	183209743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:183209743C>T	uc003flr.2	-	7	1896	c.1838G>A	c.(1837-1839)AGG>AAG	p.R613K	KLHL6_uc003fls.1_RNA|KLHL6_uc003flt.1_3'UTR|KLHL6_uc010hxk.1_RNA	NM_130446	NP_569713	Q8WZ60	KLHL6_HUMAN	kelch-like 6	613										haematopoietic_and_lymphoid_tissue(2)|ovary(1)	3	all_cancers(143;9.2e-12)|Ovarian(172;0.0172)		all cancers(12;1.29e-44)|Epithelial(37;1.24e-38)|LUSC - Lung squamous cell carcinoma(7;2.58e-24)|Lung(8;1.79e-22)|OV - Ovarian serous cystadenocarcinoma(80;2.32e-22)			GGGCACGATCCTGCGGATGTG	0.672													13	28					0	0	0.002450	0	0
DVL3	1857	broad.mit.edu	37	3	183887885	183887886	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:183887885_183887886CC>TT	uc003fms.2	+	14	1730_1731	c.1590_1591CC>TT	c.(1588-1593)GCCCCT>GCTTCT	p.P531S	DVL3_uc011bqw.1_Missense_Mutation_p.P514S|DVL3_uc003fmt.2_Missense_Mutation_p.P202S|DVL3_uc003fmu.2_Missense_Mutation_p.P363S	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	531					canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			CGGGGGCCGCCCCTTGGCCCAT	0.683													6	21					0	0	0.004672	0	0
EIF4G1	1981	broad.mit.edu	37	3	184045627	184045627	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:184045627C>T	uc003fnp.2	+	26	3988	c.3790C>T	c.(3790-3792)CAG>TAG	p.Q1264*	EIF4G1_uc003fnt.2_Nonsense_Mutation_p.Q975*|EIF4G1_uc003fnq.2_Nonsense_Mutation_p.Q1177*|EIF4G1_uc003fnr.2_Nonsense_Mutation_p.Q1100*|EIF4G1_uc010hxx.2_Nonsense_Mutation_p.Q1271*|EIF4G1_uc003fns.2_Nonsense_Mutation_p.Q1224*|EIF4G1_uc010hxy.2_Nonsense_Mutation_p.Q1271*|EIF4G1_uc003fnv.3_Nonsense_Mutation_p.Q1265*|EIF4G1_uc003fnu.3_Nonsense_Mutation_p.Q1264*|EIF4G1_uc003fnw.2_Nonsense_Mutation_p.Q1271*|EIF4G1_uc003fnx.2_Nonsense_Mutation_p.Q1069*|EIF4G1_uc003fny.3_Nonsense_Mutation_p.Q1068*|EIF4G1_uc003foa.2_5'Flank	NM_198241	NP_937884	Q04637	IF4G1_HUMAN	eukaryotic translation initiation factor 4	1264	MI.				insulin receptor signaling pathway|interspecies interaction between organisms|nuclear-transcribed mRNA poly(A) tail shortening|regulation of translational initiation	cytosol|eukaryotic translation initiation factor 4F complex	protein binding|translation initiation factor activity			lung(2)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	7	all_cancers(143;1.06e-10)|Ovarian(172;0.0339)		Epithelial(37;1.53e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			GGAGGCAGTCCAGTGCGTGCA	0.612													20	19					0	0	0.002780	0	0
DNAJB11	51726	broad.mit.edu	37	3	186299259	186299259	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:186299259C>T	uc003fqi.2	+	5	776	c.556C>T	c.(556-558)CAA>TAA	p.Q186*		NM_016306	NP_057390	Q9UBS4	DJB11_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 11	186					protein folding	endoplasmic reticulum lumen	heat shock protein binding			ovary(1)|lung(1)	2	all_cancers(143;2.84e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;1.44e-20)	GBM - Glioblastoma multiforme(93;0.0476)		TGGGCGCTTCCAAATGACCCA	0.507													35	38					0	0	0.005524	0	0
FETUB	26998	broad.mit.edu	37	3	186370277	186370277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:186370277G>A	uc010hyq.2	+	8	1267	c.1006G>A	c.(1006-1008)GGA>AGA	p.G336R	FETUB_uc011brz.1_Missense_Mutation_p.G188R|FETUB_uc003fqn.2_Missense_Mutation_p.G336R|FETUB_uc003fqo.2_Missense_Mutation_p.G231R|FETUB_uc010hyr.2_Missense_Mutation_p.G299R|FETUB_uc010hys.2_Missense_Mutation_p.G188R|FETUB_uc003fqp.3_Missense_Mutation_p.G271R	NM_014375	NP_055190	Q9UGM5	FETUB_HUMAN	fetuin B precursor	336						extracellular space	cysteine-type endopeptidase inhibitor activity			ovary(1)|lung(1)	2	all_cancers(143;6.64e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;5.73e-20)	GBM - Glioblastoma multiforme(93;0.0479)		GAATCCCCAGGGAGAAACCCT	0.517													46	47					0	0	0.003610	0	0
TP63	8626	broad.mit.edu	37	3	189608623	189608623	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:189608623G>A	uc003fry.2	+	13	1787	c.1698G>A	c.(1696-1698)ACG>ACA	p.T566T	TP63_uc003frz.2_Intron|TP63_uc010hzc.1_Intron|TP63_uc003fsc.2_Silent_p.T472T|TP63_uc003fsd.2_Intron|TP63_uc010hzd.1_Silent_p.T387T	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	566	SAM.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		ACTATTTCACGACCCAGGGGC	0.433									Hay-Wells_syndrome	HNSCC(45;0.13)			21	23					0	0	0.003954	0	0
TP63	8626	broad.mit.edu	37	3	189612028	189612028	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:189612028C>T	uc003fry.2	+	14	1869	c.1780C>T	c.(1780-1782)CGA>TGA	p.R594*	TP63_uc003frz.2_3'UTR|TP63_uc010hzc.1_3'UTR|TP63_uc003fsc.2_Nonsense_Mutation_p.R500*|TP63_uc003fsd.2_3'UTR|TP63_uc010hzd.1_Nonsense_Mutation_p.R415*	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	594	SAM.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		TGAGCAATTTCGACATGCGAT	0.532									Hay-Wells_syndrome	HNSCC(45;0.13)			25	18					0	0	0.003954	0	0
LEPREL1	55214	broad.mit.edu	37	3	189691762	189691762	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:189691762C>T	uc011bsk.1	-	10	1872	c.1484G>A	c.(1483-1485)GGA>GAA	p.G495E	LEPREL1_uc003fsg.2_Missense_Mutation_p.G314E	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	495					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGAAGTTTTTCCTCTGTATCC	0.318													69	105					0	0	0.003610	0	0
LEPREL1	55214	broad.mit.edu	37	3	189713165	189713165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:189713165C>T	uc011bsk.1	-	2	935	c.547G>A	c.(547-549)GAA>AAA	p.E183K	LEPREL1_uc003fsg.2_Missense_Mutation_p.E2K	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	183					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	TGCTGCATTTCCATGTGCTCA	0.458													18	24					0	0	0.004990	0	0
C3orf59	151963	broad.mit.edu	37	3	192516251	192516251	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:192516251C>T	uc011bsp.1	-	2	1721	c.1400G>A	c.(1399-1401)GGA>GAA	p.G467E		NM_178496	NP_848591	Q8IYB1	M21D2_HUMAN	hypothetical protein LOC151963	467											0	all_cancers(143;1.56e-08)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.8e-18)|LUSC - Lung squamous cell carcinoma(58;8.04e-06)|Lung(62;8.62e-06)	GBM - Glioblastoma multiforme(46;3.86e-05)		GATTGACTTTCCCGGGTTCTC	0.473													47	67					0	0	0.003610	0	0
ATP13A4	84239	broad.mit.edu	37	3	193232645	193232645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:193232645G>A	uc003ftd.2	-	2	184	c.76C>T	c.(76-78)CGG>TGG	p.R26W	ATP13A4_uc003fte.1_Missense_Mutation_p.R26W|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	26	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		CCTTGAGTCCGATAGCCAAAT	0.418													23	28					0	0	0.005443	0	0
LRRC15	131578	broad.mit.edu	37	3	194080774	194080774	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:194080774G>A	uc003ftu.2	-	2	1085	c.999C>T	c.(997-999)TCC>TCT	p.S333S	LRRC15_uc003ftt.2_Silent_p.S339S	NM_130830	NP_570843	Q8TF66	LRC15_HUMAN	leucine rich repeat containing 15 isoform b	333	Extracellular (Potential).|LRR 12.					integral to membrane				ovary(3)	3	all_cancers(143;5.31e-09)|Ovarian(172;0.0634)		OV - Ovarian serous cystadenocarcinoma(49;2.2e-17)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;4.94e-05)		AGGCACCCGGGGAGATGAAGC	0.567													9	14					0	0	0.008291	0	0
ATP13A3	79572	broad.mit.edu	37	3	194150496	194150496	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:194150496G>T	uc003fty.3	-	26	3187	c.2785C>A	c.(2785-2787)CGT>AGT	p.R929S	ATP13A3_uc003ftz.1_Missense_Mutation_p.R635S	NM_024524	NP_078800	Q9H7F0	AT133_HUMAN	ATPase type 13A3	929					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(1)	1	all_cancers(143;6.01e-09)|Ovarian(172;0.0634)	Melanoma(1037;0.211)	OV - Ovarian serous cystadenocarcinoma(49;3.83e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;5.98e-05)		AAAGCAGCACGGCCTTCCCTG	0.358													26	30					7.92952e-12	1.11844e-11	0.003954	1	0
C3orf43	255798	broad.mit.edu	37	3	196236461	196236461	+	Missense_Mutation	SNP	C	T	T	rs79673145	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr3:196236461C>T	uc003fws.2	-	2	287	c.130G>A	c.(130-132)GAA>AAA	p.E44K	C3orf43_uc003fwr.2_Missense_Mutation_p.E36K	NM_001077657	NP_001071125	Q147U7	CC043_HUMAN	hypothetical protein LOC255798	44						integral to membrane				ovary(1)	1	all_cancers(143;1e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;2.13e-23)|all cancers(36;2e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.76e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00298)		CTATGATGTTCGAATTTCTGC	0.438													16	49					0	0	0.004990	0	0
ZNF721	170960	broad.mit.edu	37	4	437781	437781	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:437781G>A	uc003gag.2	-	3	1166	c.475C>T	c.(475-477)CAT>TAT	p.H159Y	ABCA11P_uc003gac.2_Intron|ABCA11P_uc003gad.2_Intron|ABCA11P_uc011buv.1_Intron|ABCA11P_uc003gae.2_Intron|ABCA11P_uc010ibd.1_Intron|ZNF721_uc003gaf.3_Missense_Mutation_p.H191Y|ZNF721_uc010ibe.2_Missense_Mutation_p.H147Y	NM_133474	NP_597731	D9N162	D9N162_HUMAN	zinc finger protein 721	159						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						TCTCCAGTATGAATTTTCTTG	0.393													37	127					0	0	0.004878	0	0
POLN	353497	broad.mit.edu	37	4	2178024	2178024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:2178024C>T	uc003ger.2	-	7	1217	c.1217G>A	c.(1216-1218)AGA>AAA	p.R406K	POLN_uc010ich.1_Intron|POLN_uc011bvi.1_Missense_Mutation_p.R406K	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	406					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			CATTGTAAGTCTGTAGAGTGT	0.398								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					82	77					0	0	0.003610	0	0
ADD1	118	broad.mit.edu	37	4	2877717	2877717	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:2877717C>T	uc003gfr.2	+	2	263	c.75C>T	c.(73-75)TTC>TTT	p.F25F	ADD1_uc003gfn.2_Intron|ADD1_uc010ico.1_Silent_p.F25F|ADD1_uc003gfo.2_Silent_p.F25F|ADD1_uc003gfp.2_Silent_p.F25F|ADD1_uc003gfq.2_Silent_p.F25F|ADD1_uc003gfs.2_Silent_p.F25F|ADD1_uc003gft.3_Silent_p.F25F	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	25					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		AGAGGTACTTCGACCGAGTAG	0.522													34	62					0	0	0.003271	0	0
ADD1	118	broad.mit.edu	37	4	2910299	2910299	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:2910299T>C	uc003gfr.2	+	12	1761	c.1573T>C	c.(1573-1575)TGT>CGT	p.C525R	ADD1_uc003gfn.2_Intron|ADD1_uc003gfo.2_Missense_Mutation_p.C556R|ADD1_uc003gfp.2_Missense_Mutation_p.C525R|ADD1_uc003gfq.2_Missense_Mutation_p.C556R|ADD1_uc003gfs.2_Missense_Mutation_p.C525R	NM_001119	NP_001110	P35611	ADDA_HUMAN	adducin 1 (alpha) isoform a	525					actin filament bundle assembly|barbed-end actin filament capping|cellular component disassembly involved in apoptosis|positive regulation of protein binding	cytosol|F-actin capping protein complex|nucleus|plasma membrane	actin filament binding|calmodulin binding|metal ion binding|protein heterodimerization activity|protein homodimerization activity|spectrin binding|transcription factor binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (64;0.168)		CCAGGTTTTGTGTGGTGTAGT	0.547													19	17					0	0	0.001523	0	0
S100P	6286	broad.mit.edu	37	4	6695775	6695775	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:6695775A>C	uc003gjl.2	+	1	210	c.116A>C	c.(115-117)AAG>ACG	p.K39T		NM_005980	NP_005971	P25815	S100P_HUMAN	S100 calcium binding protein P	39	EF-hand 1.				endothelial cell migration	cytoplasm|nucleus	calcium ion binding|calcium-dependent protein binding|magnesium ion binding				0		Myeloproliferative disorder(84;0.0255)		Colorectal(103;0.011)	Cromoglicate(DB01003)	CTGATGGAGAAGGAGCTACCA	0.632													9	10					0	0	0.008291	0	0
SH3TC1	54436	broad.mit.edu	37	4	8214498	8214498	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:8214498C>T	uc003gkv.3	+	4	419	c.318C>T	c.(316-318)CTC>CTT	p.L106L	SH3TC1_uc003gkw.3_Silent_p.L30L|SH3TC1_uc003gkx.3_RNA	NM_018986	NP_061859	Q8TE82	S3TC1_HUMAN	SH3 domain and tetratricopeptide repeats 1	106							binding			large_intestine(2)|pancreas(1)	3						AGCAGACCCTCCGGGGCCAGC	0.677													5	6					0	0	0.001984	0	0
HS3ST1	9957	broad.mit.edu	37	4	11400739	11400739	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:11400739G>A	uc003gmq.2	-	2	1214	c.891C>T	c.(889-891)TTC>TTT	p.F297F		NM_005114	NP_005105	O14792	HS3S1_HUMAN	heparan sulfate D-glucosaminyl	297						Golgi lumen|integral to membrane	[heparan sulfate]-glucosamine 3-sulfotransferase 1 activity			skin(1)	1						CAACAAGCTCGAAGAACTTCT	0.443													48	49					0	0	0.003610	0	0
SLIT2	9353	broad.mit.edu	37	4	20591308	20591308	+	Silent	SNP	C	T	T	rs145314495	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:20591308C>T	uc003gpr.1	+	30	3334	c.3130C>T	c.(3130-3132)CTG>TTG	p.L1044L	SLIT2_uc003gps.1_Silent_p.L1036L	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1044	EGF-like 4.				apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TGCCCAGGACCTGAACCCCTG	0.502													21	28					0	0	0.003954	0	0
SLIT2	9353	broad.mit.edu	37	4	20619120	20619120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:20619120G>A	uc003gpr.1	+	36	4399	c.4195G>A	c.(4195-4197)GAG>AAG	p.E1399K	SLIT2_uc003gps.1_Missense_Mutation_p.E1391K	NM_004787	NP_004778	O94813	SLIT2_HUMAN	slit homolog 2 precursor	1399					apoptosis involved in luteolysis|axon extension involved in axon guidance|branching morphogenesis of a tube|cell migration involved in sprouting angiogenesis|cellular response to heparin|cellular response to hormone stimulus|chemorepulsion involved in postnatal olfactory bulb interneuron migration|corticospinal neuron axon guidance through spinal cord|induction of negative chemotaxis|motor axon guidance|negative regulation of actin filament polymerization|negative regulation of cell growth|negative regulation of cellular response to growth factor stimulus|negative regulation of chemokine-mediated signaling pathway|negative regulation of endothelial cell migration|negative regulation of lamellipodium assembly|negative regulation of mononuclear cell migration|negative regulation of neutrophil chemotaxis|negative regulation of protein phosphorylation|negative regulation of retinal ganglion cell axon guidance|negative regulation of small GTPase mediated signal transduction|negative regulation of smooth muscle cell chemotaxis|negative regulation of vascular permeability|positive regulation of apoptosis|positive regulation of axonogenesis|response to cortisol stimulus|retinal ganglion cell axon guidance|Roundabout signaling pathway|ureteric bud development	cell surface|cytoplasm|extracellular space|plasma membrane	calcium ion binding|GTPase inhibitor activity|heparin binding|laminin-1 binding|protein homodimerization activity|proteoglycan binding|Roundabout binding			central_nervous_system(4)|skin(4)|ovary(3)	11						TAAGTGCTTGGAGGGCCATGG	0.537													15	11					0	0	0.004007	0	0
ANAPC4	29945	broad.mit.edu	37	4	25379083	25379083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:25379083C>T	uc003gro.2	+	2	163	c.34C>T	c.(34-36)CGG>TGG	p.R12W		NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	12					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				CCCATCCTTCCGGGTGGTGGG	0.627													6	25					0	0	0.001984	0	0
SEL1L3	23231	broad.mit.edu	37	4	25836876	25836876	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:25836876G>A	uc003gru.3	-	3	955	c.803C>T	c.(802-804)CCG>CTG	p.P268L		NM_015187	NP_056002	Q68CR1	SE1L3_HUMAN	sel-1 suppressor of lin-12-like 3	268						integral to membrane	binding				0						CCGAAACCTCGGGAACTTCTT	0.532													48	62					0	0	0.003610	0	0
CCKAR	886	broad.mit.edu	37	4	26484868	26484868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:26484868C>T	uc003gse.1	-	4	817	c.664G>A	c.(664-666)GGA>AGA	p.G222R		NM_000730	NP_000721	P32238	CCKAR_HUMAN	cholecystokinin A receptor	222	Helical; Name=5; (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|elevation of cytosolic calcium ion concentration|response to nutrient	integral to plasma membrane	cholecystokinin receptor activity			lung(3)|pancreas(1)	4		Breast(46;0.0503)			Ceruletide(DB00403)	ATCACAATTCCAGGAATAAGA	0.383													29	92					0	0	0.006320	0	0
ARAP2	116984	broad.mit.edu	37	4	36214080	36214080	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:36214080G>A	uc003gsq.1	-	5	1409	c.1071C>T	c.(1069-1071)ACC>ACT	p.T357T	ARAP2_uc003gsr.1_Silent_p.T357T	NM_015230	NP_056045	Q8WZ64	ARAP2_HUMAN	ArfGAP with RhoGAP domain, ankyrin repeat and PH	357					regulation of ARF GTPase activity|small GTPase mediated signal transduction	cytosol	ARF GTPase activator activity|phosphatidylinositol-3,4,5-trisphosphate binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3						CTTCTCCCTGGGTCAAAAATT	0.333													6	34					0	0	0.003080	0	0
KLHL5	51088	broad.mit.edu	37	4	39104936	39104936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:39104936C>T	uc003gts.2	+	7	1543	c.1468C>T	c.(1468-1470)CGT>TGT	p.R490C	KLHL5_uc003gtp.2_Missense_Mutation_p.R444C|KLHL5_uc003gtq.2_Missense_Mutation_p.R303C|KLHL5_uc003gtr.1_Missense_Mutation_p.R490C|KLHL5_uc003gtt.2_Missense_Mutation_p.R429C	NM_015990	NP_057074	Q96PQ7	KLHL5_HUMAN	kelch-like 5 isoform 1	490	Kelch 1.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1						GTATGATCTCCGTACAAATAT	0.358													4	17					0	0	0.000248	0	0
CHRNA9	55584	broad.mit.edu	37	4	40337876	40337876	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:40337876A>C	uc003gva.1	+	2	113	c.97A>C	c.(97-99)AAG>CAG	p.K33Q		NM_017581	NP_060051	Q9UGM1	ACHA9_HUMAN	cholinergic receptor, nicotinic, alpha 9	33	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|synaptic transmission	cell junction|postsynaptic membrane	calcium channel activity|receptor activity			breast(3)|skin(3)|central_nervous_system(1)	7					Nicotine(DB00184)	ATATGCTCAGAAGTTGTTTAA	0.403													21	26					0	0	0.001523	0	0
LIMCH1	22998	broad.mit.edu	37	4	41663489	41663489	+	Missense_Mutation	SNP	G	A	A	rs139738687		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:41663489G>A	uc003gvu.3	+	14	1988	c.1934G>A	c.(1933-1935)GGA>GAA	p.G645E	LIMCH1_uc003gvv.3_Missense_Mutation_p.G645E|LIMCH1_uc003gvw.3_Missense_Mutation_p.G645E|LIMCH1_uc003gvx.3_Missense_Mutation_p.G633E|LIMCH1_uc003gwe.3_Missense_Mutation_p.G645E|LIMCH1_uc003gvy.3_Missense_Mutation_p.G474E|LIMCH1_uc003gwa.3_Missense_Mutation_p.G486E|LIMCH1_uc003gvz.3_Missense_Mutation_p.G1030E|LIMCH1_uc011byu.1_Missense_Mutation_p.G479E|LIMCH1_uc003gwc.3_Missense_Mutation_p.G491E|LIMCH1_uc003gwd.3_Missense_Mutation_p.G479E|LIMCH1_uc011byv.1_Missense_Mutation_p.G396E|LIMCH1_uc011byw.1_5'Flank	NM_014988	NP_055803	Q9UPQ0	LIMC1_HUMAN	LIM and calponin homology domains 1 isoform a	645					actomyosin structure organization		actin binding|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4						AATGATGGTGGAAAATCAAGA	0.353											OREG0016170	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	9					0	0	0.003080	0	0
ATP8A1	10396	broad.mit.edu	37	4	42414996	42414996	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:42414996G>A	uc003gwr.2	-	37	3664	c.3432C>T	c.(3430-3432)ATC>ATT	p.I1144I	ATP8A1_uc003gwq.2_Silent_p.I370I|ATP8A1_uc003gws.2_Silent_p.I1129I	NM_006095	NP_006086	Q9Y2Q0	AT8A1_HUMAN	ATPase, aminophospholipid transporter (APLT),	1144	Cytoplasmic (Potential).				ATP biosynthetic process	chromaffin granule membrane|integral to membrane|plasma membrane	aminophospholipid transporter activity|ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|cation-transporting ATPase activity|magnesium ion binding|phospholipid-translocating ATPase activity			skin(2)|central_nervous_system(1)	3					Phosphatidylserine(DB00144)	ACTGTGAAACGATTCCATTTT	0.438													9	30					0	0	0.006214	0	0
GABRA2	2555	broad.mit.edu	37	4	46252353	46252353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:46252353C>T	uc003gxc.3	-	9	2001	c.1328G>A	c.(1327-1329)AGA>AAA	p.R443K	GABRA2_uc010igc.2_Missense_Mutation_p.R443K|GABRA2_uc011bzc.1_Missense_Mutation_p.R448K	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	443					gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	TACAGGTTCTCTGTTTAAATA	0.348													19	66					0	0	0.008871	0	0
ATP10D	57205	broad.mit.edu	37	4	47538910	47538910	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:47538910C>T	uc003gxk.1	+	9	1515	c.1351C>T	c.(1351-1353)CGA>TGA	p.R451*	ATP10D_uc003gxl.1_5'UTR|ATP10D_uc003gxj.3_Nonsense_Mutation_p.R436*	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	451	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						GATGGTTTTTCGAAGATGTAG	0.443													5	32					0	0	0.001168	0	0
ATP10D	57205	broad.mit.edu	37	4	47570864	47570864	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:47570864G>A	uc003gxk.1	+	16	3028	c.2864G>A	c.(2863-2865)GGG>GAG	p.G955E	ATP10D_uc003gxl.1_Missense_Mutation_p.G203E	NM_020453	NP_065186	Q9P241	AT10D_HUMAN	ATPase, class V, type 10D	955	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(2)|pancreas(1)	3						GATGCCTGTGGGATGCTGATG	0.443													9	34					0	0	0.000978	0	0
CNGA1	1259	broad.mit.edu	37	4	47938653	47938653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:47938653G>A	uc003gxt.3	-	11	2124	c.1858C>T	c.(1858-1860)CCT>TCT	p.P620S	uc003gxr.1_Intron|CNGA1_uc003gxu.2_Missense_Mutation_p.P689S	NM_000087	NP_000078	P29973	CNGA1_HUMAN	cyclic nucleotide gated channel alpha 1 isoform	620	Cytoplasmic (Potential).				response to stimulus|visual perception	integral to plasma membrane	cGMP binding|ion channel activity			ovary(2)	2						AGATCTTTAGGATCACTGCCA	0.453													21	94					0	0	0.002299	0	0
TXK	7294	broad.mit.edu	37	4	48088607	48088607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:48088607C>T	uc003gxx.3	-	10	918	c.832G>A	c.(832-834)GGA>AGA	p.G278R		NM_003328	NP_003319	P42681	TXK_HUMAN	TXK tyrosine kinase	278	ATP (By similarity).|Protein kinase.					cytoplasm	ATP binding|non-membrane spanning protein tyrosine kinase activity				0						TGACCGCTTCCAATCTCCTTT	0.398													27	30					0	0	0.005443	0	0
LRRC66	339977	broad.mit.edu	37	4	52861881	52861881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:52861881G>A	uc003gzi.2	-	4	1320	c.1307C>T	c.(1306-1308)CCA>CTA	p.P436L		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	436						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CTCTGGGTGTGGTGTGTGCCC	0.552													38	42					0	0	0.006230	0	0
LNX1	84708	broad.mit.edu	37	4	54362234	54362234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:54362234C>T	uc003hag.3	-	6	1562	c.1306G>A	c.(1306-1308)GAT>AAT	p.D436N	PDGFRA_uc003haa.2_Intron|LNX1_uc003haf.3_Missense_Mutation_p.D340N|LNX1_uc003hah.3_Intron	NM_001126328	NP_001119800	Q8TBB1	LNX1_HUMAN	ligand of numb-protein X 1 isoform a	436	PDZ 2.					cytoplasm	zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_neural(26;0.153)		GBM - Glioblastoma multiforme(3;8.2e-46)|LUSC - Lung squamous cell carcinoma(32;0.0134)			TATCGAAGATCATGTCCATTG	0.507													12	63					0	0	0.000978	0	0
KIT	3815	broad.mit.edu	37	4	55564466	55564466	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:55564466C>T	uc010igr.2	+	3	441	c.354C>T	c.(352-354)TTC>TTT	p.F118F	KIT_uc010igs.2_Silent_p.F118F	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	118	Extracellular (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	CCAAGCTTTTCCTTGTTGACC	0.458		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				20	21					0	0	0.001523	0	0
KIT	3815	broad.mit.edu	37	4	55602768	55602768	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:55602768C>T	uc010igr.2	+	18	2676	c.2589C>T	c.(2587-2589)TTC>TTT	p.F863F	KIT_uc010igs.2_Silent_p.F859F	NM_000222	NP_000213	P10721	KIT_HUMAN	v-kit Hardy-Zuckerman 4 feline sarcoma viral	863	Protein kinase.|Cytoplasmic (Potential).				male gonad development|transmembrane receptor protein tyrosine kinase signaling pathway	extracellular space|integral to membrane	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity			soft_tissue(3273)|haematopoietic_and_lymphoid_tissue(1572)|skin(99)|testis(49)|bone(21)|genital_tract(18)|kidney(17)|ovary(16)|salivary_gland(15)|large_intestine(11)|thymus(6)|lung(6)|central_nervous_system(4)|NS(3)|eye(2)|endometrium(2)|breast(1)|stomach(1)|autonomic_ganglia(1)|pancreas(1)	5118	all_cancers(7;0.00453)|all_lung(4;0.000565)|Lung NSC(11;0.00129)|all_epithelial(27;0.0104)|Glioma(25;0.08)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(32;0.000276)|Epithelial(7;0.209)	Colorectal(1;0.0276)|COAD - Colon adenocarcinoma(1;0.171)	Dasatinib(DB01254)|Imatinib(DB00619)|Sorafenib(DB00398)|Sunitinib(DB01268)	GGGAGCTGTTCTCTTTAGGTA	0.418		1	Mis|O		GIST|AML|TGCT|mastocytosis|mucosal melanoma	GIST|epithelioma	Piebald trait		Mast_Cell_disease_Familial_Clustering_of|Piebaldism|Gastrointestinal_Stromal_Tumors_Sporadic_Multiple_Primary|Familial_Gastrointestinal_Stromal_Tumors				53	40					0	0	0.003610	0	0
LPHN3	23284	broad.mit.edu	37	4	62897307	62897307	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:62897307C>T	uc010ihh.2	+	20	3539	c.3366C>T	c.(3364-3366)TTC>TTT	p.F1122F	LPHN3_uc003hcq.3_Silent_p.F1122F|LPHN3_uc003hct.2_Silent_p.F506F	NM_015236	NP_056051	Q9HAR2	LPHN3_HUMAN	latrophilin 3 precursor	1100	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			lung(15)|ovary(1)|central_nervous_system(1)|pancreas(1)	18						TATTTATTTTCCATTGTGTCC	0.333													35	39					0	0	0.002836	0	0
UGT2B11	10720	broad.mit.edu	37	4	70066428	70066428	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:70066428C>T	uc003heh.2	-	6	1329	c.1320G>A	c.(1318-1320)GAG>GAA	p.E440E	uc003hei.1_Intron	NM_001073	NP_001064	O75310	UDB11_HUMAN	UDP glucuronosyltransferase 2 family,	440					estrogen metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3						TCATAATATTCTCTTTATATC	0.348													37	44					0	0	0.006230	0	0
UGT2A1	10941	broad.mit.edu	37	4	70455305	70455305	+	Nonsense_Mutation	SNP	G	A	A	rs139303872	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:70455305G>A	uc003hem.3	-	6	1432	c.1369C>T	c.(1369-1371)CGA>TGA	p.R457*	UGT2A1_uc011caq.1_Nonsense_Mutation_p.R623*|UGT2A1_uc010ihu.2_Nonsense_Mutation_p.R457*|UGT2A1_uc010iht.2_Nonsense_Mutation_p.R413*|UGT2A1_uc010ihs.2_Nonsense_Mutation_p.R458*	NM_006798	NP_006789	Q9Y4X1	UD2A1_HUMAN	UDP glucuronosyltransferase 2 family,	457	Extracellular (Potential).				detection of chemical stimulus|sensory perception of smell	integral to membrane	glucuronosyltransferase activity|glucuronosyltransferase activity			ovary(1)	1						AAGACTGCTCGATCCAGGGGC	0.448													29	96					0	0	0.006320	0	0
SULT1E1	6783	broad.mit.edu	37	4	70709918	70709918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:70709918C>T	uc003heo.2	-	7	846	c.733G>A	c.(733-735)GAA>AAA	p.E245K		NM_005420	NP_005411	P49888	ST1E1_HUMAN	estrogen sulfotransferase	245					3'-phosphoadenosine 5'-phosphosulfate metabolic process|sulfation|xenobiotic metabolic process	cytosol|nuclear membrane	estrone sulfotransferase activity|flavonol 3-sulfotransferase activity|steroid binding|steroid sulfotransferase activity			ovary(1)	1						TTCATAATTTCGTCTGGCAGT	0.428													56	69					0	0	0.003610	0	0
PROL1	58503	broad.mit.edu	37	4	71265005	71265005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:71265005G>A	uc003hfi.2	+	2	177	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_021225	NP_067048	Q99935	PROL1_HUMAN	proline rich, lacrimal 1	1					regulation of sensory perception of pain	extracellular region	endopeptidase inhibitor activity			large_intestine(1)	1		all_hematologic(202;0.196)				TTTAAAGAATGAAATTAACTT	0.299													15	39					0	0	0.007413	0	0
AMBN	258	broad.mit.edu	37	4	71472178	71472178	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:71472178G>A	uc003hfl.2	+	13	1150	c.1075G>A	c.(1075-1077)GAT>AAT	p.D359N		NM_016519	NP_057603	Q9NP70	AMBN_HUMAN	ameloblastin precursor	359					bone mineralization|cell adhesion|cell proliferation|odontogenesis of dentine-containing tooth	proteinaceous extracellular matrix	growth factor activity|structural constituent of tooth enamel			ovary(3)|skin(1)	4			Lung(101;0.235)			TCTCCCTAAGGATGACATTCC	0.587													14	14					0	0	0.001855	0	0
ENAM	10117	broad.mit.edu	37	4	71507736	71507736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:71507736C>T	uc011caw.1	+	9	874	c.593C>T	c.(592-594)CCT>CTT	p.P198L		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	198					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			CTACAGAATCCTTACTTTGGA	0.353													43	153					0	0	0.003610	0	0
CCDC158	339965	broad.mit.edu	37	4	77278649	77278649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:77278649C>T	uc003hkb.3	-	13	2204	c.2051G>A	c.(2050-2052)CGA>CAA	p.R684Q		NM_001042784	NP_001036249	Q5M9N0	CD158_HUMAN	coiled-coil domain containing 158	684	Potential.									skin(3)|ovary(2)|pancreas(1)	6						ACTTTTGTTTCGGAAATTCCT	0.274													15	20					0	0	0.003163	0	0
SHROOM3	57619	broad.mit.edu	37	4	77661858	77661858	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:77661858G>A	uc011cbx.1	+	5	3485	c.2532G>A	c.(2530-2532)GGG>GGA	p.G844G	SHROOM3_uc011cbz.1_Silent_p.G668G|SHROOM3_uc003hkf.1_Silent_p.G719G|SHROOM3_uc003hkg.2_Silent_p.G622G	NM_020859	NP_065910	Q8TF72	SHRM3_HUMAN	shroom family member 3 protein	844					apical protein localization|cell morphogenesis|cellular pigment accumulation|pattern specification process|regulation of cell shape	adherens junction|apical junction complex|apical plasma membrane|cytoplasm|microtubule	actin binding			skin(2)|ovary(1)	3			Lung(101;0.0903)			TAGGCAACGGGGAGCAGCACT	0.592													16	38					0	0	0.007413	0	0
FRAS1	80144	broad.mit.edu	37	4	79297021	79297021	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:79297021G>A	uc003hlb.2	+	26	3720	c.3280G>A	c.(3280-3282)GAA>AAA	p.E1094K	FRAS1_uc003hkw.2_Missense_Mutation_p.E1094K	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1093	CSPG 1.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CACCTCTAATGAAACATGTTC	0.443													17	19					0	0	0.001523	0	0
NAA11	84779	broad.mit.edu	37	4	80246882	80246882	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:80246882C>T	uc003hlt.3	-	1	290	c.150G>A	c.(148-150)GGG>GGA	p.G50G		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	50	Interaction with NAA15 (By similarity).|N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						CCACAATCTTCCCGTCCTCAT	0.522													16	69					0	0	0.006122	0	0
NAA11	84779	broad.mit.edu	37	4	80246932	80246932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:80246932G>A	uc003hlt.3	-	1	240	c.100C>T	c.(100-102)CAT>TAT	p.H34Y		NM_032693	NP_116082	Q9BSU3	NAA11_HUMAN	alpha-N-acetyltransferase 1B	34	Interaction with NAA15 (By similarity).|N-acetyltransferase.					cytoplasm|nucleus	peptide alpha-N-acetyltransferase activity|protein binding			ovary(1)|central_nervous_system(1)	2						GAAAGGCCATGATATAAATAG	0.478													10	48					0	0	0.008291	0	0
GK2	2712	broad.mit.edu	37	4	80327838	80327838	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:80327838G>T	uc003hlu.2	-	1	1535	c.1517C>A	c.(1516-1518)GCC>GAC	p.A506D		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	506					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CTTCATTACGGCTTTCTTCCA	0.458													37	53					4.01765e-15	5.67457e-15	0.002222	1	0
BMP3	651	broad.mit.edu	37	4	81966962	81966962	+	Silent	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:81966962T>A	uc003hmg.3	+	2	707	c.387T>A	c.(385-387)TCT>TCA	p.S129S		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	129					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						ACATTTTGTCTGCCACACTGT	0.413													32	48					0	0	0.002445	0	0
PRKG2	5593	broad.mit.edu	37	4	82126026	82126026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:82126026G>A	uc003hmh.2	-	1	190	c.176C>T	c.(175-177)TCG>TTG	p.S59L	PRKG2_uc011cch.1_Missense_Mutation_p.S59L	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	59					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						AGTCTGCTTCGACAGCTGCTC	0.557													49	39					0	0	0.003610	0	0
RASGEF1B	153020	broad.mit.edu	37	4	82369428	82369428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:82369428C>T	uc003hmi.1	-	5	593	c.449G>A	c.(448-450)AGA>AAA	p.R150K	RASGEF1B_uc003hmj.1_Missense_Mutation_p.R149K|RASGEF1B_uc010ijq.1_Missense_Mutation_p.R108K	NM_152545	NP_689758	Q0VAM2	RGF1B_HUMAN	RasGEF domain family, member 1B	150	N-terminal Ras-GEF.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	intracellular	Ras guanyl-nucleotide exchange factor activity				0						GACATTCTTTCTGTATGTCTG	0.463													19	54					0	0	0.008871	0	0
CDS1	1040	broad.mit.edu	37	4	85562031	85562031	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:85562031C>T	uc011ccv.1	+	10	1418	c.920C>T	c.(919-921)CCA>CTA	p.P307L	CDS1_uc010ike.1_Missense_Mutation_p.P111L	NM_001263	NP_001254	Q92903	CDS1_HUMAN	CDP-diacylglycerol synthase 1	307					signal transduction|visual perception	endoplasmic reticulum membrane|integral to membrane	diacylglycerol cholinephosphotransferase activity|phosphatidate cytidylyltransferase activity			large_intestine(2)|ovary(1)|breast(1)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.00101)		TTTGTCTGCCCAGTGGAATAC	0.353													24	84					0	0	0.005443	0	0
ARHGAP24	83478	broad.mit.edu	37	4	86643123	86643123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:86643123C>T	uc003hpk.2	+	3	715	c.266C>T	c.(265-267)CCA>CTA	p.P89L	ARHGAP24_uc003hpi.1_Missense_Mutation_p.P89L|ARHGAP24_uc003hpj.2_Missense_Mutation_p.P89L	NM_001025616	NP_001020787	Q8N264	RHG24_HUMAN	Rho GTPase activating protein 24 isoform 1	89	PH.				angiogenesis|cell differentiation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cell projection|cytoskeleton|cytosol|focal adhesion	GTPase activator activity|protein binding				0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000571)		GAAGTAGTTCCAGGTAAGATA	0.373													19	17					0	0	0.001523	0	0
SLC10A6	345274	broad.mit.edu	37	4	87769914	87769914	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:87769914C>T	uc003hqd.2	-	1	503	c.355G>A	c.(355-357)GTT>ATT	p.V119I		NM_197965	NP_932069	Q3KNW5	SOAT_HUMAN	sodium-dependent organic anion transporter	119	Cytoplasmic (Potential).					integral to membrane|plasma membrane	bile acid:sodium symporter activity				0		Acute lymphoblastic leukemia(40;0.244)|all_hematologic(202;0.248)		OV - Ovarian serous cystadenocarcinoma(123;0.00099)		TCTCCATCAACCCAGAAGGTG	0.493													43	46					0	0	0.003610	0	0
SPP1	6696	broad.mit.edu	37	4	88902819	88902819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:88902819C>T	uc003hra.2	+	6	574	c.409C>T	c.(409-411)CCC>TCC	p.P137S	SPP1_uc003hrb.2_Missense_Mutation_p.P110S|SPP1_uc003hrc.2_Missense_Mutation_p.P123S|SPP1_uc011cde.1_Missense_Mutation_p.P150S|SPP1_uc003hrd.2_Missense_Mutation_p.P96S	NM_001040058	NP_001035147	P10451	OSTP_HUMAN	secreted phosphoprotein 1 isoform a	137					biomineral tissue development|cell adhesion|decidualization|embryo implantation|ossification|response to vitamin D	extracellular space	cytokine activity			ovary(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;9.87e-05)		CACTGATTTTCCCACGGACCT	0.468													47	59					0	0	0.003610	0	0
MMRN1	22915	broad.mit.edu	37	4	90857467	90857467	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:90857467C>T	uc003hst.2	+	6	2707	c.2636C>T	c.(2635-2637)TCA>TTA	p.S879L	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Missense_Mutation_p.S621L	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	879					cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		TATTATATTTCAGTTAAAAAA	0.353													15	22					0	0	0.004990	0	0
FAM190A	401145	broad.mit.edu	37	4	91230275	91230275	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:91230275G>A	uc003hsv.3	+	2	1180	c.840G>A	c.(838-840)ATG>ATA	p.M280I	FAM190A_uc003hsu.3_Missense_Mutation_p.M280I|FAM190A_uc010ikv.2_RNA|FAM190A_uc003hsw.2_Missense_Mutation_p.M280I	NM_001145065	NP_001138537	Q9C0I3	F190A_HUMAN	KIAA1680 protein isoform 1	280										large_intestine(1)|ovary(1)	2						GTGGAAGCATGGCATCCCACT	0.428													78	115					0	0	0.003610	0	0
GRID2	2895	broad.mit.edu	37	4	94436523	94436524	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:94436523_94436524GG>AA	uc011cdt.1	+	13	2412_2413	c.2154_2155GG>AA	c.(2152-2157)TCGGAG>TCAAAG	p.E719K	GRID2_uc011cdu.1_Missense_Mutation_p.E624K	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	719	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GCAATGGATCGGAGAACAATGT	0.475													24	24					0	0	0.004672	0	0
ADH1B	125	broad.mit.edu	37	4	100239230	100239230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:100239230C>T	uc003hus.3	-	3	316	c.232G>A	c.(232-234)GGA>AGA	p.G78R	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.G38R|ADH1B_uc011ceh.1_5'UTR|ADH1B_uc011cei.1_Missense_Mutation_p.G38R	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	78					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	ACCCCTTCTCCAACACTCTCC	0.532													71	88					0	0	0.003610	0	0
C4orf17	84103	broad.mit.edu	37	4	100460382	100460382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:100460382C>T	uc003huw.2	+	7	1014	c.691C>T	c.(691-693)CAC>TAC	p.H231Y	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	231											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		GTTAACTCATCACAGAAGAAA	0.443													69	68					0	0	0.003610	0	0
NFKB1	4790	broad.mit.edu	37	4	103459047	103459047	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:103459047C>T	uc011ceq.1	+	5	656	c.189C>T	c.(187-189)GGC>GGT	p.G63G	NFKB1_uc011cep.1_Silent_p.G64G	NM_003998	NP_003989	P19838	NFKB1_HUMAN	nuclear factor kappa-B, subunit 1 isoform 1	63	RHD.				anti-apoptosis|apoptosis|cellular response to mechanical stimulus|inflammatory response|innate immune response|membrane protein intracellular domain proteolysis|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of calcidiol 1-monooxygenase activity|nerve growth factor receptor signaling pathway|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|positive regulation of transcription, DNA-dependent|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter	cytosol|I-kappaB/NF-kappaB complex|mitochondrion|nucleoplasm	protein binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding			ovary(2)|breast(2)|skin(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;6.59e-08)	Dexamethasone(DB01234)|Pranlukast(DB01411)|Thalidomide(DB01041)	TATGTGAAGGCCCATCCCATG	0.398													13	61					0	0	0.003163	0	0
NPNT	255743	broad.mit.edu	37	4	106859556	106859556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:106859556C>T	uc003hya.2	+	5	689	c.484C>T	c.(484-486)CCT>TCT	p.P162S	NPNT_uc011cfc.1_Missense_Mutation_p.P179S|NPNT_uc011cfd.1_Missense_Mutation_p.P192S|NPNT_uc011cfe.1_Missense_Mutation_p.P192S|NPNT_uc010ilt.1_Missense_Mutation_p.P162S|NPNT_uc011cff.1_Missense_Mutation_p.P162S|NPNT_uc010ilu.1_Missense_Mutation_p.P58S	NM_001033047	NP_001028219	Q6UXI9	NPNT_HUMAN	nephronectin precursor	162	EGF-like 3.				cell differentiation	membrane	calcium ion binding			skin(1)	1		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;5.41e-07)		GCAGCTGGCTCCTGATGGGAG	0.512													16	29					0	0	0.001523	0	0
AGXT2L1	64850	broad.mit.edu	37	4	109680996	109680996	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:109680996G>A	uc003hzc.2	-	3	425	c.244C>T	c.(244-246)CGA>TGA	p.R82*	AGXT2L1_uc010imc.2_Nonsense_Mutation_p.R76*|AGXT2L1_uc011cfm.1_Nonsense_Mutation_p.R42*|AGXT2L1_uc011cfn.1_Nonsense_Mutation_p.R9*|AGXT2L1_uc011cfo.1_Nonsense_Mutation_p.R24*	NM_031279	NP_112569	Q8TBG4	AT2L1_HUMAN	alanine-glyoxylate aminotransferase 2-like 1	82					cellular amino acid metabolic process	mitochondrion	alanine-glyoxylate transaminase activity|pyridoxal phosphate binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;0.000281)		TGGAGGAATCGAGAATTTGTA	0.418													13	15					0	0	0.001855	0	0
SEC24B	10427	broad.mit.edu	37	4	110431225	110431225	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:110431225G>A	uc003hzk.2	+	8	1789	c.1734G>A	c.(1732-1734)AAG>AAA	p.K578K	SEC24B_uc003hzl.2_Silent_p.K543K|SEC24B_uc011cfp.1_Silent_p.K608K|SEC24B_uc011cfq.1_Silent_p.K577K|SEC24B_uc011cfr.1_Silent_p.K542K	NM_006323	NP_006314	O95487	SC24B_HUMAN	SEC24 (S. cerevisiae) homolog B isoform a	578					COPII vesicle coating|intracellular protein transport|post-translational protein modification|protein N-linked glycosylation via asparagine	COPII vesicle coat|cytosol|endoplasmic reticulum membrane|Golgi membrane|perinuclear region of cytoplasm	protein binding|transporter activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;3.03e-05)		ATAAAGCTAAGCTTCCTTTAG	0.343													18	31					0	0	0.007413	0	0
ALPK1	80216	broad.mit.edu	37	4	113346895	113346895	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:113346895C>T	uc003iap.3	+	7	889	c.610C>T	c.(610-612)CTG>TTG	p.L204L	ALPK1_uc011cfw.1_RNA|ALPK1_uc003ian.3_Silent_p.L204L|ALPK1_uc011cfx.1_Silent_p.L126L|ALPK1_uc003iao.3_RNA|ALPK1_uc010imo.2_5'UTR	NM_025144	NP_079420	Q96QP1	ALPK1_HUMAN	alpha-kinase 1	204							ATP binding|protein serine/threonine kinase activity			ovary(5)	5		Ovarian(17;0.0446)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00325)		AGGGCAGATTCTGCAAAAGCT	0.413													29	77					0	0	0.008361	0	0
USP53	54532	broad.mit.edu	37	4	120177660	120177660	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:120177660T>A	uc003ics.3	+	8	1617	c.551T>A	c.(550-552)ATT>AAT	p.I184N	USP53_uc003icr.3_Missense_Mutation_p.I184N|USP53_uc003icu.3_5'UTR	NM_019050	NP_061923	Q70EK8	UBP53_HUMAN	ubiquitin specific protease 53	184					ubiquitin-dependent protein catabolic process		ubiquitin thiolesterase activity			ovary(1)|breast(1)|kidney(1)|skin(1)	4						GTGCGGTACATTTCTACAACA	0.318													41	40					0	0	0.003610	0	0
C4orf31	79625	broad.mit.edu	37	4	121957664	121957664	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:121957664T>G	uc003idq.1	-	4	1989	c.1462A>C	c.(1462-1464)AAC>CAC	p.N488H		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	488	Fibronectin type-III 2.										0						TCATTGTAGTTATCATCCACT	0.428													34	43					0	0	0.002836	0	0
QRFPR	84109	broad.mit.edu	37	4	122250603	122250603	+	Missense_Mutation	SNP	C	T	T	rs145398896	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:122250603C>T	uc010inj.1	-	6	1541	c.1162G>A	c.(1162-1164)GGA>AGA	p.G388R	QRFPR_uc010ink.1_RNA|QRFPR_uc003ids.2_3'UTR	NM_198179	NP_937822	Q96P65	QRFPR_HUMAN	G protein-coupled receptor 103	388	Cytoplasmic (Potential).					plasma membrane	neuropeptide Y receptor activity				0						AATGCTTCTCCTTTGGTTTCC	0.423													81	108					0	0	0.003610	0	0
TRPC3	7222	broad.mit.edu	37	4	122854053	122854053	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:122854053G>A	uc003ieg.2	-	2	434	c.360C>T	c.(358-360)GCC>GCT	p.A120A	TRPC3_uc010inr.2_Silent_p.A47A|TRPC3_uc003ief.2_Silent_p.A47A|TRPC3_uc011cgl.1_5'UTR	NM_001130698	NP_001124170	Q13507	TRPC3_HUMAN	transient receptor potential cation channel,	35	Cytoplasmic (Potential).|ANK 1.				axon guidance|phototransduction|platelet activation	integral to plasma membrane	protein binding|store-operated calcium channel activity			ovary(2)	2						TGCCGTACTCGGCGGCGTCGA	0.662													13	36					0	0	0.003163	0	0
KIAA1109	84162	broad.mit.edu	37	4	123274229	123274229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:123274229C>T	uc003ieh.2	+	79	14065	c.14020C>T	c.(14020-14022)CGT>TGT	p.R4674C	KIAA1109_uc003iem.2_Missense_Mutation_p.R1030C	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4674					regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						TCCAAATTTTCGTTCAAAATC	0.368													17	65					0	0	0.004990	0	0
FAT4	79633	broad.mit.edu	37	4	126239214	126239214	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:126239214C>T	uc003ifj.3	+	1	1648	c.1648C>T	c.(1648-1650)CTG>TTG	p.L550L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	550	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						CCAGATTGTTCTGAATATAAG	0.517											OREG0016317	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	16	15					0	0	0.004990	0	0
FAT4	79633	broad.mit.edu	37	4	126240916	126240916	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:126240916C>T	uc003ifj.3	+	1	3350	c.3350C>T	c.(3349-3351)TCG>TTG	p.S1117L		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	1117	Cadherin 11.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						AGGGCTGGGTCGTTTGTGGGC	0.388													54	51					0	0	0.003610	0	0
FAT4	79633	broad.mit.edu	37	4	126412549	126412549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:126412549G>A	uc003ifj.3	+	17	14572	c.14572G>A	c.(14572-14574)GAG>AAG	p.E4858K	FAT4_uc011cgp.1_Missense_Mutation_p.E3099K|FAT4_uc003ifi.1_Missense_Mutation_p.E2335K	NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	4858	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						ATATGACAGGGAGAAGCCAAT	0.428													27	40					0	0	0.002445	0	0
SLC25A31	83447	broad.mit.edu	37	4	128685486	128685486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:128685486G>A	uc003ifl.2	+	3	595	c.449G>A	c.(448-450)CGA>CAA	p.R150Q		NM_031291	NP_112581	Q9H0C2	ADT4_HUMAN	solute carrier family 25 (mitochondrial carrier;	150	Solcar 2.				transmembrane transport	cilium|flagellum|integral to membrane|mitochondrial inner membrane	binding|transporter activity				0						GATTTTGCCCGAACCCGATTA	0.388													37	26					0	0	0.006230	0	0
PCDH10	57575	broad.mit.edu	37	4	134073511	134073511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:134073511G>A	uc003iha.2	+	1	3042	c.2216G>A	c.(2215-2217)CGT>CAT	p.R739H	PCDH10_uc003igz.2_Missense_Mutation_p.R739H	NM_032961	NP_116586	Q9P2E7	PCD10_HUMAN	protocadherin 10 isoform 1 precursor	739	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2				LUSC - Lung squamous cell carcinoma(193;0.227)		CTGGCCGTGCGTTGCCAAAAA	0.597													12	36					0	0	0.004990	0	0
PCDH18	54510	broad.mit.edu	37	4	138451346	138451346	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:138451346G>A	uc003ihe.3	-	1	2284	c.1897C>T	c.(1897-1899)CCA>TCA	p.P633S	PCDH18_uc003ihf.3_Missense_Mutation_p.P626S|PCDH18_uc011cgz.1_Intron|PCDH18_uc003ihg.3_Missense_Mutation_p.P413S|PCDH18_uc011cha.1_Intron	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	633	Cadherin 6.|Extracellular (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CATGATCGTGGATCAATTATG	0.443													71	92					0	0	0.003610	0	0
RAB33B	83452	broad.mit.edu	37	4	140375442	140375442	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:140375442C>T	uc003ihv.2	+	1	482	c.93C>T	c.(91-93)TCC>TCT	p.S31S		NM_031296	NP_112586	Q9H082	RB33B_HUMAN	RAB33B, member RAS oncogene family	31					protein transport|small GTPase mediated signal transduction	Golgi membrane	GTP binding				0	all_hematologic(180;0.162)					CTGCCCGCTCCCGCATCTTCA	0.627													10	9					0	0	0.001368	0	0
HHIP	64399	broad.mit.edu	37	4	145579946	145579946	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:145579946C>T	uc003ijs.1	+	3	1132	c.477C>T	c.(475-477)TTC>TTT	p.F159F	HHIP_uc003ijr.1_Silent_p.F159F	NM_022475	NP_071920	Q96QV1	HHIP_HUMAN	hedgehog-interacting protein precursor	159						cytoplasm|extracellular region	catalytic activity|protein binding|zinc ion binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.0185)		TTAAAGGTTTCCTTCAAACAA	0.343													21	80					0	0	0.001882	0	0
EDNRA	1909	broad.mit.edu	37	4	148453712	148453712	+	Silent	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:148453712A>T	uc003iky.2	+	4	1295	c.603A>T	c.(601-603)GTA>GTT	p.V201V	EDNRA_uc011cid.1_5'UTR|EDNRA_uc010ipe.1_Missense_Mutation_p.N159Y|EDNRA_uc010ipf.1_Intron|EDNRA_uc010ipg.1_Intron	NM_001957	NP_001948	P25101	EDNRA_HUMAN	endothelin receptor type A isoform a precursor	201	Cytoplasmic (Potential).				activation of adenylate cyclase activity|artery smooth muscle contraction|cell proliferation|glucose transport|respiratory gaseous exchange	integral to plasma membrane	endothelin-A receptor activity|phosphatidylinositol phospholipase C activity			ovary(1)|breast(1)	2	all_hematologic(180;0.151)			GBM - Glioblastoma multiforme(119;0.154)	Bosentan(DB00559)	TTCCTTTGGTAACTGCCATTG	0.443													25	80					0	0	0.004656	0	0
FGA	2243	broad.mit.edu	37	4	155507389	155507389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:155507389G>A	uc003iod.1	-	5	1250	c.1192C>T	c.(1192-1194)CCA>TCA	p.P398S	FGA_uc003ioe.1_Missense_Mutation_p.P398S|FGA_uc003iof.1_Intron	NM_000508	NP_000499	P02671	FIBA_HUMAN	fibrinogen, alpha polypeptide isoform alpha-E	398	By similarity.				platelet activation|platelet degranulation|protein polymerization|response to calcium ion|signal transduction	external side of plasma membrane|fibrinogen complex|platelet alpha granule lumen	eukaryotic cell surface binding|protein binding, bridging|receptor binding			ovary(2)|breast(1)	3	all_hematologic(180;0.215)	Renal(120;0.0458)			Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Sucralfate(DB00364)|Tenecteplase(DB00031)	CCAGAGCCTGGGCTATCTGGC	0.532													43	67					0	0	0.008740	0	0
NPY2R	4887	broad.mit.edu	37	4	156135355	156135355	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:156135355C>T	uc003ioq.2	+	2	759	c.264C>T	c.(262-264)TTC>TTT	p.F88F	NPY2R_uc003ior.2_Silent_p.F88F	NM_000910	NP_000901	P49146	NPY2R_HUMAN	neuropeptide Y receptor Y2	88	Helical; Name=2; (Potential).				cardiac left ventricle morphogenesis|inhibition of adenylate cyclase activity by G-protein signaling pathway|locomotory behavior|outflow tract morphogenesis	integral to plasma membrane	calcium channel regulator activity			lung(2)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0854)				CCAACTTTTTCATTGCCAATC	0.473													15	35					0	0	0.002450	0	0
PDGFC	56034	broad.mit.edu	37	4	157732075	157732075	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:157732075C>T	uc003iph.1	-	3	900	c.409G>A	c.(409-411)GGA>AGA	p.G137R	PDGFC_uc003ipi.1_5'UTR|PDGFC_uc011cis.1_5'UTR|PDGFC_uc011cir.1_Intron	NM_016205	NP_057289	Q9NRA1	PDGFC_HUMAN	platelet-derived growth factor C precursor	137	CUB.				central nervous system development|platelet-derived growth factor receptor signaling pathway|positive regulation of cell division|positive regulation of DNA replication|positive regulation of fibroblast proliferation|vascular endothelial growth factor receptor signaling pathway	endoplasmic reticulum lumen|extracellular space|Golgi membrane|nucleus	cell surface binding|growth factor activity|platelet-derived growth factor receptor binding|protein homodimerization activity			ovary(1)|lung(1)|skin(1)	3	all_hematologic(180;0.24)	Renal(120;0.0458)		KIRC - Kidney renal clear cell carcinoma(143;0.08)|Kidney(143;0.0977)|COAD - Colon adenocarcinoma(41;0.212)		ATTTGATTTCCTTTAGAAATC	0.393													30	29					0	0	0.008361	0	0
FSTL5	56884	broad.mit.edu	37	4	162402298	162402298	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:162402298C>T	uc003iqh.2	-	13	1918	c.1482G>A	c.(1480-1482)GAG>GAA	p.E494E	FSTL5_uc003iqi.2_Silent_p.E493E|FSTL5_uc010iqv.2_Silent_p.E484E	NM_020116	NP_064501	Q8N475	FSTL5_HUMAN	follistatin-like 5 isoform a	494						extracellular region	calcium ion binding			ovary(2)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)|skin(1)	8	all_hematologic(180;0.24)			COAD - Colon adenocarcinoma(41;0.179)		CTTCATCTCCCTCAGCTTTGG	0.373													43	118					0	0	0.003610	0	0
NPY1R	4886	broad.mit.edu	37	4	164247564	164247564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:164247564C>T	uc003iqm.1	-	2	409	c.143G>A	c.(142-144)GGA>GAA	p.G48E	NPY1R_uc011cjj.1_Intron	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	48	Helical; Name=1; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GATCACAGCTCCATAAGCAAG	0.408													21	51					0	0	0.002299	0	0
ANP32C	23520	broad.mit.edu	37	4	165118667	165118667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:165118667C>T	uc011cjk.1	-	1	197	c.197G>A	c.(196-198)AGA>AAA	p.R66K	MARCH1_uc003iqs.1_Intron	NM_012403	NP_036535	O43423	AN32C_HUMAN	acidic nuclear phosphoprotein 32C	66	LRR 2.										0	all_hematologic(180;0.203)	Prostate(90;0.0138)|Melanoma(52;0.18)|all_neural(102;0.223)		KIRC - Kidney renal clear cell carcinoma(143;0.242)		TTCAAGCTTTCTCAACTTTAA	0.408													60	68					0	0	0.003610	0	0
TLL1	7092	broad.mit.edu	37	4	166929148	166929148	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:166929148G>A	uc003irh.1	+	7	1512	c.865G>A	c.(865-867)GAA>AAA	p.E289K	TLL1_uc011cjn.1_Missense_Mutation_p.E289K|TLL1_uc011cjo.1_Missense_Mutation_p.E113K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	289	Metalloprotease (By similarity).				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		CTCACTTGGAGAAAGATATGA	0.398													13	57					0	0	0.002450	0	0
DDX60	55601	broad.mit.edu	37	4	169142907	169142907	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:169142907G>A	uc003irp.2	-	36	5242	c.4950C>T	c.(4948-4950)TCC>TCT	p.S1650S	DDX60_uc003iro.2_Silent_p.S121S	NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	1650							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		ATCCTATCAAGGAACCATGTT	0.408													24	33					0	0	0.006320	0	0
DDX60	55601	broad.mit.edu	37	4	169189085	169189085	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:169189085C>T	uc003irp.2	-	21	3128	c.2836G>A	c.(2836-2838)GAA>AAA	p.E946K		NM_017631	NP_060101	Q8IY21	DDX60_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60	946							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.0485)		GTATTATTTTCAATTATTTTG	0.353													40	38					0	0	0.006999	0	0
NEK1	4750	broad.mit.edu	37	4	170398377	170398377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:170398377C>T	uc003isb.1	-	24	2740	c.2248G>A	c.(2248-2250)GAA>AAA	p.E750K	NEK1_uc003isc.1_Missense_Mutation_p.E706K|NEK1_uc003isd.1_Missense_Mutation_p.E778K|NEK1_uc003ise.1_Missense_Mutation_p.E734K|NEK1_uc003isf.1_Missense_Mutation_p.E681K	NM_012224	NP_036356	Q96PY6	NEK1_HUMAN	NIMA-related kinase 1	750					cell division|cilium assembly|mitosis	nucleus|pericentriolar material	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(3)|ovary(2)|large_intestine(1)	6		Prostate(90;0.00601)|Renal(120;0.0183)		GBM - Glioblastoma multiforme(119;0.0287)|KIRC - Kidney renal clear cell carcinoma(143;0.0325)|Kidney(143;0.0385)|LUSC - Lung squamous cell carcinoma(193;0.14)		ACTGATTTTTCTTTTTCATGC	0.368													4	10					0	0	0.000602	0	0
MORF4	10934	broad.mit.edu	37	4	174537329	174537329	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:174537329C>T	uc011cke.1	-	1	466	c.466G>A	c.(466-468)GAA>AAA	p.E156K		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GCAAGAATTTCGGCATACTGT	0.448													36	131					0	0	0.003755	0	0
AGA	175	broad.mit.edu	37	4	178361493	178361493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:178361493G>A	uc003iuu.1	-	2	277	c.215C>T	c.(214-216)TCT>TTT	p.S72F	AGA_uc003iuv.1_5'Flank|AGA_uc003iuw.2_5'Flank	NM_000027	NP_000018	P20933	ASPG_HUMAN	aspartylglucosaminidase precursor	72			S -> P (in AGU; Arab. Specifically prevents the proteolytic activation cleavage of AGA in the endoplasmic reticulum).		asparagine catabolic process via L-aspartate|protein deglycosylation|protein maturation	endoplasmic reticulum|intermediate filament cytoskeleton|lysosome|microtubule cytoskeleton	N4-(beta-N-acetylglucosaminyl)-L-asparaginase activity				0		all_lung(41;1.27e-09)|Lung NSC(41;1.1e-08)|Breast(14;6.27e-05)|Melanoma(52;0.00102)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Hepatocellular(41;0.148)|all_neural(102;0.164)|Colorectal(36;0.245)		all cancers(43;1.37e-22)|Epithelial(43;3.86e-20)|OV - Ovarian serous cystadenocarcinoma(60;3.8e-11)|Colorectal(24;6.98e-05)|GBM - Glioblastoma multiforme(59;0.000362)|COAD - Colon adenocarcinoma(29;0.000462)|STAD - Stomach adenocarcinoma(60;0.0029)|LUSC - Lung squamous cell carcinoma(193;0.0328)|READ - Rectum adenocarcinoma(43;0.163)		AAAGCCTACAGAGCCGTCACA	0.498													85	55					0	0	0.003610	0	0
ODZ3	55714	broad.mit.edu	37	4	183601411	183601411	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:183601411G>A	uc003ivd.1	+	8	1585	c.1548G>A	c.(1546-1548)GTG>GTA	p.V516V	ODZ3_uc003ive.1_5'UTR	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	516	Extracellular (Potential).|EGF-like 1.				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		AGTCTGTGGTGGAATGTCCCC	0.423													7	23					0	0	0.003080	0	0
WWC2	80014	broad.mit.edu	37	4	184182240	184182240	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr4:184182240C>T	uc010irx.2	+	11	1646	c.1464C>T	c.(1462-1464)TTC>TTT	p.F488F	WWC2_uc003ivk.3_Silent_p.F283F|WWC2_uc003ivl.3_RNA|WWC2_uc010iry.2_Silent_p.F170F|WWC2_uc003ivn.3_Silent_p.F52F	NM_024949	NP_079225	Q6AWC2	WWC2_HUMAN	WW and C2 domain containing 2	488										ovary(2)|lung(1)	3		all_lung(41;5.28e-14)|Lung NSC(41;1.35e-13)|Colorectal(36;0.00681)|Hepatocellular(41;0.00886)|Renal(120;0.00992)|Prostate(90;0.0237)|all_hematologic(60;0.0592)|Esophageal squamous(56;0.179)|all_neural(102;0.202)		all cancers(43;3.38e-24)|Epithelial(43;1.4e-20)|OV - Ovarian serous cystadenocarcinoma(60;1.09e-09)|GBM - Glioblastoma multiforme(59;3.33e-05)|Colorectal(24;3.58e-05)|STAD - Stomach adenocarcinoma(60;4.21e-05)|COAD - Colon adenocarcinoma(29;0.000171)|LUSC - Lung squamous cell carcinoma(40;0.0145)|READ - Rectum adenocarcinoma(43;0.242)		AACTGGACTTCCTTCTGCAAG	0.498													11	14					0	0	0.001855	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	144942	144942	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:144942G>A	uc003jak.2	+	4	794	c.744G>A	c.(742-744)AGG>AGA	p.R248R		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	248					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		CCCTCCCCAGGAAAGAGGTCC	0.562													13	6					0	0	0.003163	0	0
TPPP	11076	broad.mit.edu	37	5	677879	677879	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:677879G>A	uc003jbg.3	-	1	1015	c.297C>T	c.(295-297)GTC>GTT	p.V99V	TPPP_uc003jbh.3_Silent_p.V99V	NM_007030	NP_008961	O94811	TPPP_HUMAN	tubulin polymerization promoting protein	99	Mediates interaction with LIMK1.				microtubule bundle formation|microtubule polymerization|positive regulation of protein polymerization	nucleus|perinuclear region of cytoplasm|soluble fraction	calcium ion binding|microtubule binding				0		Ovarian(839;0.0563)	Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)	GBM - Glioblastoma multiforme(108;0.0191)		TCTTGCTGAAGACGATGTCCA	0.642													18	16					0	0	0.001882	0	0
SLC6A19	340024	broad.mit.edu	37	5	1216728	1216728	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:1216728G>A	uc003jbw.3	+	7	999	c.943G>A	c.(943-945)GTG>ATG	p.V315M		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19	315	Helical; Name=7; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CTTCACATCGGTGTATGTGGC	0.587													5	27					0	0	0.000602	0	0
SLC6A19	340024	broad.mit.edu	37	5	1221815	1221816	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:1221815_1221816GG>AA	uc003jbw.3	+	12	1758	c.1702_splice	c.e12-1	p.E568_splice		NM_001003841	NP_001003841	Q695T7	S6A19_HUMAN	solute carrier family 6, member 19						cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity				0	all_cancers(3;3.55e-15)|Lung NSC(6;2.89e-14)|all_lung(6;2.2e-13)|all_epithelial(6;3.75e-10)		Epithelial(17;0.000356)|all cancers(22;0.00137)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCTCTCCCCAGGAGGAATTTCC	0.589													10	18					0	0	0.004672	0	0
SLC6A18	348932	broad.mit.edu	37	5	1232978	1232978	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:1232978C>T	uc003jby.1	+	3	537	c.414C>T	c.(412-414)TCC>TCT	p.S138S		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	138	Extracellular (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			CCTGGAGCTCCTGCCCACCGG	0.632													4	31					0	0	0.001168	0	0
SLC6A18	348932	broad.mit.edu	37	5	1244843	1244843	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:1244843C>T	uc003jby.1	+	11	1740	c.1617C>T	c.(1615-1617)TTC>TTT	p.F539F		NM_182632	NP_872438	Q96N87	S6A18_HUMAN	solute carrier family 6, member 18	539	Helical; Name=11; (Potential).				cellular nitrogen compound metabolic process	integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(1)	1	all_cancers(3;2.99e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.76e-10)		Epithelial(17;0.000356)|all cancers(22;0.00124)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			TCCTCCTGTTCTGGAAGCCAC	0.622													10	30					0	0	0.008291	0	0
TERT	7015	broad.mit.edu	37	5	1253879	1253879	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:1253879C>T	uc003jcb.1	-	16	3421	c.3363G>A	c.(3361-3363)CCG>CCA	p.P1121P	TERT_uc003jbz.1_Silent_p.P317P|TERT_uc003jca.1_Silent_p.P1109P|TERT_uc003jcc.1_Silent_p.P1058P|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	1121	CTE.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			AGGGCAGTGCCGGGTTGGCTG	0.667									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				13	7					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	5	7303927	7303927	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:7303927G>A	uc003jdy.1	-	5		c.427C>T								Homo sapiens cDNA FLJ42124 fis, clone TESTI2009477, weakly  similar to TRICHOHYALIN.																		CGTATGGTATGATCCTGGGCC	0.493													5	10					0	0	0.000602	0	0
CTNND2	1501	broad.mit.edu	37	5	11159866	11159866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:11159866G>A	uc003jfa.1	-	12	2126	c.1981C>T	c.(1981-1983)CTT>TTT	p.L661F	CTNND2_uc010itt.2_Missense_Mutation_p.L570F|CTNND2_uc011cmy.1_Missense_Mutation_p.L324F|CTNND2_uc011cmz.1_Missense_Mutation_p.L228F|CTNND2_uc010itu.1_RNA|CTNND2_uc011cmx.1_Missense_Mutation_p.L228F	NM_001332	NP_001323	Q9UQB3	CTND2_HUMAN	catenin (cadherin-associated protein), delta 2	661	ARM 4.				multicellular organismal development|neuron cell-cell adhesion|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	adherens junction|cytoplasm|nucleus	protein binding			large_intestine(2)|ovary(2)|skin(2)|pancreas(1)|lung(1)	8						AGGTTCCAAAGGACTCCTGCA	0.488													17	45					0	0	0.006122	0	0
DNAH5	1767	broad.mit.edu	37	5	13752267	13752267	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:13752267G>A	uc003jfd.2	-	64	11046	c.11004C>T	c.(11002-11004)TTC>TTT	p.F3668F	DNAH5_uc003jfc.2_5'UTR	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3668	AAA 5 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CAGTTTTAATGAAGTTTCTTT	0.408									Kartagener_syndrome				30	18					0	0	0.002445	0	0
DNAH5	1767	broad.mit.edu	37	5	13776665	13776665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:13776665G>A	uc003jfd.2	-	55	9298	c.9256C>T	c.(9256-9258)CTC>TTC	p.L3086F		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	3086	AAA 4 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GAGAAGCAGAGCACAATATGA	0.493									Kartagener_syndrome				25	33					0	0	0.003954	0	0
DNAH5	1767	broad.mit.edu	37	5	13870977	13870977	+	Missense_Mutation	SNP	G	A	A	rs149609746		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:13870977G>A	uc003jfd.2	-	24	3775	c.3733C>T	c.(3733-3735)CGT>TGT	p.R1245C		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1245	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTAATTGGACGATTTAGTTTC	0.393									Kartagener_syndrome				17	29					0	0	0.004990	0	0
ZNF622	90441	broad.mit.edu	37	5	16451855	16451855	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:16451855G>A	uc003jfq.2	-	6	1465	c.1345C>T	c.(1345-1347)CAA>TAA	p.Q449*		NM_033414	NP_219482	Q969S3	ZN622_HUMAN	zinc finger protein 622	449						cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1						TTCATCCTTTGGACATACTGC	0.438													28	24					0	0	0.006320	0	0
CDH18	1016	broad.mit.edu	37	5	19483414	19483414	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:19483414G>A	uc003jgc.2	-	11	2255	c.1878C>T	c.(1876-1878)CTC>CTT	p.L626L	CDH18_uc003jgd.2_Silent_p.L626L|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	626	Helical; (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					ACTTACCCAGGAGAATGAGAA	0.463													30	21					0	0	0.002096	0	0
CDH12	1010	broad.mit.edu	37	5	21842363	21842364	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:21842363_21842364CC>TT	uc010iuc.2	-	5	1178_1179	c.720_721GG>AA	c.(718-723)AAGGAT>AAAAAT	p.D241N	CDH12_uc011cno.1_Missense_Mutation_p.D201N|CDH12_uc003jgk.2_Missense_Mutation_p.D241N	NM_004061	NP_004052	P55289	CAD12_HUMAN	cadherin 12, type 2 preproprotein	241	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)	2						CCTCCCATATCCTTGGCTTGGA	0.411										HNSCC(59;0.17)			31	22					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	5	28927058	28927058	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:28927058G>A	uc003jgz.1	+	1		c.82G>A								Homo sapiens similar to Striatin, mRNA (cDNA clone MGC:150339 IMAGE:40119616), complete cds.																		GTCCTGCAAGGATATTGTGGC	0.562													7	6					0	0	0.001984	0	0
PDZD2	23037	broad.mit.edu	37	5	32089224	32089224	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:32089224C>T	uc003jhl.2	+	20	6058	c.5670C>T	c.(5668-5670)CTC>CTT	p.L1890L	PDZD2_uc003jhm.2_Silent_p.L1890L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1890					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						GGCTCAGCCTCAAGGGCAAGG	0.552													28	14					0	0	0.005443	0	0
UGT3A1	133688	broad.mit.edu	37	5	35965926	35965926	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:35965926C>T	uc003jjv.1	-	4	562	c.405G>A	c.(403-405)AAG>AAA	p.K135K	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Silent_p.K135K|UGT3A1_uc011cor.1_Silent_p.K101K|UGT3A1_uc003jjy.1_Silent_p.K81K	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	135	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AGTTCTCATTCTTTAAGGAAT	0.358													19	32					0	0	0.007413	0	0
UGT3A1	133688	broad.mit.edu	37	5	35991306	35991306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:35991306G>A	uc003jjv.1	-	1	194	c.37C>T	c.(37-39)CTT>TTT	p.L13F	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.L13F|UGT3A1_uc011cor.1_Missense_Mutation_p.L13F|UGT3A1_uc003jjy.1_Intron	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	13						integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			CCAGAAAGAAGGAAGGCCACT	0.607													14	40					0	0	0.004007	0	0
UGT3A2	167127	broad.mit.edu	37	5	36038066	36038066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:36038066C>T	uc003jjz.1	-	6	1221	c.1128G>A	c.(1126-1128)ATG>ATA	p.M376I	UGT3A2_uc011cos.1_Missense_Mutation_p.M342I|UGT3A2_uc011cot.1_Missense_Mutation_p.M74I	NM_174914	NP_777574	Q3SY77	UD3A2_HUMAN	UDP glycosyltransferase 3 family, polypeptide A2	376	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)	6	all_lung(31;0.000179)		Lung(74;0.111)|Epithelial(62;0.113)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			GGATGGCCTCCATTATGCTAT	0.493													28	25					0	0	0.007291	0	0
C5orf42	65250	broad.mit.edu	37	5	37165645	37165645	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:37165645G>A	uc011cpa.1	-	36	7760	c.7529C>T	c.(7528-7530)CCC>CTC	p.P2510L	C5orf42_uc011coy.1_Missense_Mutation_p.P1010L|C5orf42_uc003jks.2_RNA|C5orf42_uc011coz.1_Missense_Mutation_p.P1585L	NM_023073	NP_075561	E9PH94	E9PH94_HUMAN	hypothetical protein LOC65250	2510										ovary(4)|breast(2)|skin(1)	7	all_lung(31;0.000616)		COAD - Colon adenocarcinoma(61;0.14)|Epithelial(62;0.177)|Colorectal(62;0.202)			CTATACCTTGGGTTTCTTAAT	0.358													9	28					0	0	0.006214	0	0
LIFR	3977	broad.mit.edu	37	5	38504110	38504110	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:38504110C>T	uc010ive.1	-	10	1737	c.1405G>A	c.(1405-1407)GAA>AAA	p.E469K	LIFR_uc003jli.2_Missense_Mutation_p.E469K	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	469	Extracellular (Potential).|Fibronectin type-III 3.				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					TTCTTAATTTCAATTTCACAT	0.289			T	PLAG1	salivary adenoma								22	69					0	0	0.001882	0	0
LIFR	3977	broad.mit.edu	37	5	38506053	38506053	+	Silent	SNP	C	T	T	rs139809889		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:38506053C>T	uc010ive.1	-	9	1577	c.1245G>A	c.(1243-1245)CCG>CCA	p.P415P	LIFR_uc003jli.2_Silent_p.P415P	NM_001127671	NP_001121143	P42702	LIFR_HUMAN	leukemia inhibitory factor receptor precursor	415	Fibronectin type-III 2.|Extracellular (Potential).				positive regulation of cell proliferation	extracellular region|integral to plasma membrane	ciliary neurotrophic factor receptor binding|growth factor binding|leukemia inhibitory factor receptor activity			ovary(3)|large_intestine(1)	4	all_lung(31;0.00021)					ATCGACCCAGCGGATTGTGAG	0.294			T	PLAG1	salivary adenoma								37	132					0	0	0.002222	0	0
OSMR	9180	broad.mit.edu	37	5	38923310	38923310	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:38923310G>A	uc003jln.1	+	13	2191	c.1824G>A	c.(1822-1824)AGG>AGA	p.R608R	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	608	Fibronectin type-III 3.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					CTACAAAAAGGATTGCTTGTT	0.348													17	18					0	0	0.007413	0	0
C7	730	broad.mit.edu	37	5	40955534	40955534	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:40955534G>A	uc003jmh.2	+	10	1253	c.1139G>A	c.(1138-1140)GGA>GAA	p.G380E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	380	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				ATCAGAGGGGGAGGTGCAGGC	0.423													56	43					0	0	0.003610	0	0
C7	730	broad.mit.edu	37	5	40958352	40958353	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:40958352_40958353GG>AA	uc003jmh.2	+	11	1592_1593	c.1478_1479GG>AA	c.(1477-1479)GGG>GAA	p.G493E	C7_uc011cpn.1_RNA	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	493					complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				GTCCTCGTAGGGAATCAAGCAG	0.485													5	23					0	0	0.004672	0	0
ITGA2	3673	broad.mit.edu	37	5	52379209	52379209	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:52379209T>C	uc003joy.2	+	27	3327	c.3184T>C	c.(3184-3186)TTG>CTG	p.L1062L	ITGA2_uc011cqa.1_RNA|ITGA2_uc011cqb.1_RNA|ITGA2_uc011cqc.1_Silent_p.L986L|ITGA2_uc011cqd.1_RNA|ITGA2_uc011cqe.1_RNA	NM_002203	NP_002194	P17301	ITA2_HUMAN	integrin alpha 2 precursor	1062	Extracellular (Potential).				axon guidance|blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|interspecies interaction between organisms|organ morphogenesis	integrin complex	collagen binding|identical protein binding|receptor activity			lung(1)	1		Lung NSC(810;3.11e-05)|Breast(144;0.014)|Prostate(461;0.0181)				TACCTGCTGGTTGAAAGACGT	0.343													11	9					0	0	0.001855	0	0
GZMA	3001	broad.mit.edu	37	5	54405901	54405901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:54405901C>T	uc003jpm.2	+	5	717	c.680C>T	c.(679-681)TCC>TTC	p.S227F		NM_006144	NP_006135	P12544	GRAA_HUMAN	granzyme A precursor	227	Peptidase S1.				cleavage of lamin|cytolysis|immune response|negative regulation of DNA binding|negative regulation of endodeoxyribonuclease activity|negative regulation of oxidoreductase activity|positive regulation of apoptosis	extracellular region|immunological synapse|nucleus	protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|pancreas(1)|skin(1)	4		Lung NSC(810;4.08e-05)|Breast(144;0.0433)|Prostate(74;0.183)				GGGGTCACTTCCTTTGGCCTT	0.483													16	37					0	0	0.004007	0	0
PLK2	10769	broad.mit.edu	37	5	57753146	57753147	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:57753146_57753147CC>TT	uc003jrn.2	-	7	996_997	c.869_870GG>AA	c.(868-870)AGG>AAA	p.R290K		NM_006622	NP_006613	Q9NYY3	PLK2_HUMAN	polo-like kinase 2	290	Protein kinase.				positive regulation of I-kappaB kinase/NF-kappaB cascade		ATP binding|protein binding|protein serine/threonine kinase activity|signal transducer activity			ovary(2)|lung(1)|skin(1)	4		all_cancers(5;1.76e-12)|all_epithelial(5;2.09e-13)|all_lung(5;6.64e-05)|Lung NSC(5;0.000127)|Prostate(74;0.055)|Breast(144;0.0602)|Ovarian(174;0.182)		OV - Ovarian serous cystadenocarcinoma(10;7.03e-37)		CCCTTATGCACCTATAAGTTTC	0.431													9	16					0	0	0.004672	0	0
NDUFAF2	91942	broad.mit.edu	37	5	60369005	60369005	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:60369005G>A	uc003jsp.3	+	2	308	c.181G>A	c.(181-183)GAC>AAC	p.D61N	NDUFAF2_uc003jso.3_Intron	NM_174889	NP_777549	Q8N183	MIMIT_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	61						membrane|mitochondrion	electron carrier activity|NADH dehydrogenase (ubiquinone) activity				0		Lung NSC(810;3.36e-05)|Prostate(74;0.0225)|Ovarian(174;0.17)|Breast(144;0.237)				AAAAGAAGTAGACTATGAAGC	0.313													41	96					0	0	0.003610	0	0
HTR1A	3350	broad.mit.edu	37	5	63256820	63256820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:63256820C>T	uc011cqt.1	-	1	727	c.727G>A	c.(727-729)GGA>AGA	p.G243R		NM_000524	NP_000515	P08908	5HT1A_HUMAN	5-hydroxytryptamine (serotonin) receptor 1A	243	Cytoplasmic (By similarity).				behavior|positive regulation of cell proliferation	integral to plasma membrane	serotonin receptor activity			ovary(2)|pancreas(2)	4		Lung NSC(810;3.55e-06)|Prostate(74;0.0352)|Ovarian(174;0.0545)|Breast(144;0.0575)|Colorectal(97;0.234)		Lung(70;0.105)	Alprenolol(DB00866)|Aripiprazole(DB01238)|Buspirone(DB00490)|Clozapine(DB00363)|Eletriptan(DB00216)|Ergoloid mesylate(DB01049)|Fluvoxamine(DB00176)|Lisuride(DB00589)|Methysergide(DB00247)|Mirtazapine(DB00370)|Pindolol(DB00960)|Propranolol(DB00571)|Quetiapine(DB01224)|Sertraline(DB01104)|Tegaserod(DB01079)|Trazodone(DB00656)|Venlafaxine(DB00285)|Ziprasidone(DB00246)	GGAGATGCTCCATGGCGGGTG	0.627													19	15					0	0	0.005443	0	0
RGS7BP	401190	broad.mit.edu	37	5	63890584	63890584	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:63890584G>A	uc003jtj.2	+	4	511	c.511G>A	c.(511-513)GAG>AAG	p.E171K	RGS7BP_uc011cqu.1_Missense_Mutation_p.E38K	NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	171					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		CAAAATTGAGGAGAGTGCTGA	0.478													41	26					0	0	0.002222	0	0
ADAMTS6	11174	broad.mit.edu	37	5	64466461	64466461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:64466461G>A	uc003jtp.2	-	24	4041	c.3227C>T	c.(3226-3228)CCC>CTC	p.P1076L	ADAMTS6_uc003jto.2_RNA|ADAMTS6_uc003jtq.2_RNA	NM_197941	NP_922932	Q9UKP5	ATS6_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1076					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Lung NSC(167;2.44e-06)|Prostate(74;0.014)|Ovarian(174;0.0549)|Breast(144;0.111)|Colorectal(97;0.235)		Lung(70;0.00942)		ATTAGAAATGGGGGTACTGTC	0.498													6	7					0	0	0.001168	0	0
NLN	57486	broad.mit.edu	37	5	65084139	65084139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:65084139C>T	uc003juf.2	+	8	1269	c.1153C>T	c.(1153-1155)CCA>TCA	p.P385S	NLN_uc003jue.2_Missense_Mutation_p.P385S|NLN_uc003jug.2_Missense_Mutation_p.P214S|NLN_uc010iww.2_Missense_Mutation_p.P80S	NM_020726	NP_065777	Q9BYT8	NEUL_HUMAN	neurolysin precursor	385					proteolysis	mitochondrial intermembrane space	metal ion binding|metalloendopeptidase activity			central_nervous_system(1)	1		Lung NSC(167;7.21e-05)|Prostate(74;0.0174)|Ovarian(174;0.186)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0743)|Lung(70;0.00616)		GGAATACTTCCCAATTGAGGT	0.418													26	56					0	0	0.003954	0	0
RAD17	5884	broad.mit.edu	37	5	68682007	68682007	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:68682007G>A	uc003jwo.2	+	7	794	c.732G>A	c.(730-732)AGG>AGA	p.R244R	RAD17_uc003jwg.2_Silent_p.R233R|RAD17_uc003jwh.2_Silent_p.R233R|RAD17_uc003jwi.2_Silent_p.R233R|RAD17_uc003jwj.2_Silent_p.R233R|RAD17_uc003jwk.2_Silent_p.R233R|RAD17_uc003jwl.2_Silent_p.R233R|RAD17_uc003jwm.2_Silent_p.R68R|RAD17_uc003jwn.2_Silent_p.R147R	NM_133339	NP_579917	O75943	RAD17_HUMAN	RAD17 homolog isoform 2	244					cell cycle|DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint|mitotic cell cycle checkpoint|negative regulation of DNA replication|regulation of phosphorylation	nucleoplasm	ATP binding|nucleoside-triphosphatase activity|protein binding				0		Lung NSC(167;5.19e-05)|Prostate(74;0.0143)|Ovarian(174;0.0448)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;9.36e-57)|Epithelial(20;1.21e-52)|all cancers(19;3.34e-48)|Lung(70;0.0183)		GTTATTTTAGGAAGTATGTGA	0.328								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					21	47					0	0	0.001523	0	0
BDP1	55814	broad.mit.edu	37	5	70820117	70820117	+	Silent	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:70820117T>G	uc003kbp.1	+	25	6002	c.5739T>G	c.(5737-5739)CCT>CCG	p.P1913P	BDP1_uc003kbo.2_Silent_p.P1913P|BDP1_uc003kbq.1_RNA	NM_018429	NP_060899	A6H8Y1	BDP1_HUMAN	transcription factor-like nuclear regulator	1913					regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	DNA binding			skin(2)	2		Lung NSC(167;0.000422)|Prostate(74;0.00815)|Ovarian(174;0.0176)|Breast(144;0.198)		OV - Ovarian serous cystadenocarcinoma(47;5.28e-56)|Epithelial(20;2.31e-50)		CTCCTGAACCTGTTTCTGCTC	0.388													23	40					0	0	0.003954	0	0
FAM169A	26049	broad.mit.edu	37	5	74078872	74078872	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:74078872C>T	uc003kdm.2	-	12	1391	c.1348G>A	c.(1348-1350)GAA>AAA	p.E450K	FAM169A_uc010izm.2_Missense_Mutation_p.E390K|FAM169A_uc003kdl.2_Missense_Mutation_p.E268K	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	450	Asp/Glu-rich.										0						TCTAAAACTTCACTAGTGGAG	0.393													12	47					0	0	0.000978	0	0
FAM169A	26049	broad.mit.edu	37	5	74078955	74078955	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:74078955G>A	uc003kdm.2	-	12	1308	c.1265C>T	c.(1264-1266)TCT>TTT	p.S422F	FAM169A_uc010izm.2_Missense_Mutation_p.S362F|FAM169A_uc003kdl.2_Missense_Mutation_p.S240F	NM_015566	NP_056381	Q9Y6X4	F169A_HUMAN	hypothetical protein LOC26049	422	Asp/Glu-rich.										0						CTCTAATTCAGATTCCTACAC	0.403													41	18					0	0	0.003214	0	0
AGGF1	55109	broad.mit.edu	37	5	76342421	76342421	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:76342421A>G	uc003ket.2	+	6	1480	c.1120A>G	c.(1120-1122)ACA>GCA	p.T374A		NM_018046	NP_060516	Q8N302	AGGF1_HUMAN	angiogenic factor VG5Q	374					angiogenesis|cell adhesion|positive regulation of angiogenesis|positive regulation of endothelial cell proliferation|RNA processing|vasculogenesis	extracellular region|perinuclear region of cytoplasm	eukaryotic cell surface binding|nucleic acid binding|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(232;0.000414)|Lung NSC(167;0.0011)|Ovarian(174;0.0129)|Prostate(461;0.11)		OV - Ovarian serous cystadenocarcinoma(54;4.51e-51)|Epithelial(54;2.2e-45)|all cancers(79;6.68e-41)		AGGTGAAATTACAGACTCTCA	0.368													192	101					0	0	0.003610	0	0
PDE8B	8622	broad.mit.edu	37	5	76707948	76707948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:76707948C>T	uc003kfa.2	+	16	1645	c.1600C>T	c.(1600-1602)CTT>TTT	p.L534F	PDE8B_uc003kfb.2_Missense_Mutation_p.L514F|PDE8B_uc003kfc.2_Missense_Mutation_p.L479F|PDE8B_uc003kfd.2_Missense_Mutation_p.L487F|PDE8B_uc003kfe.2_Missense_Mutation_p.L437F	NM_003719	NP_003710	O95263	PDE8B_HUMAN	phosphodiesterase 8B isoform 1	534					cyclic nucleotide metabolic process|regulation of transcription, DNA-dependent	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|two-component response regulator activity				0		all_lung(232;0.00043)|Lung NSC(167;0.00114)|Ovarian(174;0.0107)|Prostate(461;0.0605)		OV - Ovarian serous cystadenocarcinoma(54;2.21e-49)|Epithelial(54;5.82e-43)|all cancers(79;4.06e-38)		TCACAGTCACCTTGCAATGCC	0.453													101	187					0	0	0.003610	0	0
DMGDH	29958	broad.mit.edu	37	5	78329201	78329201	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:78329201C>T	uc003kfs.2	-	8	1230	c.1224G>A	c.(1222-1224)GGG>GGA	p.G408G	DMGDH_uc011cte.1_Silent_p.G258G|DMGDH_uc011ctf.1_Silent_p.G207G|DMGDH_uc011ctg.1_Silent_p.G28G	NM_013391	NP_037523	Q9UI17	M2GD_HUMAN	dimethylglycine dehydrogenase precursor	408					choline metabolic process|glycine catabolic process	mitochondrial matrix	aminomethyltransferase activity|dimethylglycine dehydrogenase activity|electron carrier activity			ovary(2)|liver(1)|skin(1)	4		all_lung(232;0.000638)|Lung NSC(167;0.00173)|Ovarian(174;0.0262)|Prostate(461;0.192)		OV - Ovarian serous cystadenocarcinoma(54;6.52e-45)|Epithelial(54;5.96e-40)|all cancers(79;3.56e-35)		TGAGATATTTCCCTACCCCAC	0.398													23	39					0	0	0.003954	0	0
BHMT2	23743	broad.mit.edu	37	5	78379596	78379596	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:78379596G>A	uc003kft.2	+	7	950	c.927G>A	c.(925-927)AGG>AGA	p.R309R	BHMT2_uc011cth.1_Silent_p.R245R	NM_017614	NP_060084	Q9H2M3	BHMT2_HUMAN	betaine-homocysteine methyltransferase 2	309					methionine biosynthetic process	cytoplasm	betaine-homocysteine S-methyltransferase activity|homocysteine S-methyltransferase activity|zinc ion binding			ovary(1)	1		all_lung(232;0.00063)|Lung NSC(167;0.00171)|Ovarian(174;0.0261)|Prostate(461;0.191)		OV - Ovarian serous cystadenocarcinoma(54;2.09e-45)|Epithelial(54;9.3e-41)|all cancers(79;4.09e-36)	L-Methionine(DB00134)	CCCCAGAAAGGGGCTTTTTGC	0.527													4	16					0	0	0.000602	0	0
CMYA5	202333	broad.mit.edu	37	5	79029225	79029225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:79029225C>T	uc003kgc.2	+	2	4709	c.4637C>T	c.(4636-4638)TCA>TTA	p.S1546L		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	1546						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAACTTCCTTCATCACAAAAT	0.418													30	44					0	0	0.007291	0	0
CMYA5	202333	broad.mit.edu	37	5	79034203	79034203	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:79034203G>A	uc003kgc.2	+	2	9687	c.9615G>A	c.(9613-9615)AAG>AAA	p.K3205K		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3205						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		GAGAGAAAAAGAAGGAAGAGG	0.403													8	18					0	0	0.003080	0	0
ANKRD34B	340120	broad.mit.edu	37	5	79855807	79855807	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:79855807C>T	uc010jam.2	-	4	382	c.32G>A	c.(31-33)GGA>GAA	p.G11E	ANKRD34B_uc003kgw.2_Missense_Mutation_p.G11E|ANKRD34B_uc010jan.2_Missense_Mutation_p.G11E	NM_001004441	NP_001004441	A5PLL1	AN34B_HUMAN	ankyrin repeat domain 34B	11	ANK 1.					cytoplasm|nucleus				pancreas(1)	1		Lung NSC(167;0.0427)|all_lung(232;0.0464)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;2.17e-46)|Epithelial(54;5.64e-41)|all cancers(79;3.24e-36)		CAAGGAATTTCCTTCACTTGA	0.453													15	9					0	0	0.006122	0	0
RASGRF2	5924	broad.mit.edu	37	5	80363978	80363978	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:80363978A>G	uc003kha.1	+	3	523	c.523A>G	c.(523-525)ATC>GTC	p.I175V	RASGRF2_uc011ctn.1_RNA|RASGRF2_uc003khb.1_5'Flank	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	175	Potential.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		AGACACAGAAATCGAAAGGCT	0.378													15	30					0	0	0.004990	0	0
RASGRF2	5924	broad.mit.edu	37	5	80476039	80476039	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:80476039G>A	uc003kha.1	+	18	2732	c.2732G>A	c.(2731-2733)CGG>CAG	p.R911Q	RASGRF2_uc011ctn.1_RNA	NM_006909	NP_008840	O14827	RGRF2_HUMAN	Ras protein-specific guanine	911					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic transmission	cytosol|endoplasmic reticulum membrane|plasma membrane	protein binding|Rho guanyl-nucleotide exchange factor activity			breast(5)|ovary(3)|large_intestine(2)|central_nervous_system(1)|skin(1)	12		Lung NSC(167;0.00498)|all_lung(232;0.00531)|Ovarian(174;0.0357)		OV - Ovarian serous cystadenocarcinoma(54;4.22e-42)|Epithelial(54;4.04e-35)|all cancers(79;2.52e-29)		TTTATTATACGGAGAACGGCT	0.448													66	39					0	0	0.003610	0	0
EDIL3	10085	broad.mit.edu	37	5	83360633	83360633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:83360633G>A	uc003kio.1	-	8	1257	c.838C>T	c.(838-840)CCA>TCA	p.P280S	EDIL3_uc003kip.1_Missense_Mutation_p.P270S|EDIL3_uc011ctt.1_Missense_Mutation_p.P57S	NM_005711	NP_005702	O43854	EDIL3_HUMAN	EGF-like repeats and discoidin I-like	280	F5/8 type C 1.				cell adhesion|multicellular organismal development	extracellular region	calcium ion binding|integrin binding			skin(2)	2		Lung NSC(167;0.000121)|all_lung(232;0.000154)|Ovarian(174;0.0425)		OV - Ovarian serous cystadenocarcinoma(54;4.3e-40)|Epithelial(54;4.79e-32)|all cancers(79;1.54e-26)		TTAGCATATGGAGTGTTGTTA	0.368													10	29					0	0	0.002450	0	0
GPR98	84059	broad.mit.edu	37	5	89943465	89943465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:89943465G>A	uc003kju.2	+	17	3269	c.3173G>A	c.(3172-3174)GGA>GAA	p.G1058E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1058	Calx-beta 8.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		GTTGAAAAAGGAGAAACGCTC	0.413													59	29					0	0	0.003610	0	0
GPR98	84059	broad.mit.edu	37	5	89948162	89948162	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:89948162G>A	uc003kju.2	+	19	3513	c.3417_splice	c.e19-1	p.W1139_splice	GPR98_uc003kjt.2_Splice_Site	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor						cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTATTTTGTAGGATTTTGAGG	0.343													29	67					0	0	0.007291	0	0
GPR98	84059	broad.mit.edu	37	5	89971149	89971149	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:89971149G>A	uc003kju.2	+	24	5296	c.5200G>A	c.(5200-5202)GAG>AAG	p.E1734K	GPR98_uc003kjt.2_5'UTR|GPR98_uc010jba.1_RNA	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1734	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CACTGTGGAGGAGGAAGATGG	0.537													4	20					0	0	0.000602	0	0
GPR98	84059	broad.mit.edu	37	5	90055296	90055296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:90055296C>T	uc003kju.2	+	58	12107	c.12011C>T	c.(12010-12012)TCC>TTC	p.S4004F	GPR98_uc003kjt.2_Missense_Mutation_p.S1710F|GPR98_uc003kjv.2_Missense_Mutation_p.S1604F	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	4004	Calx-beta 26.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		TTCAATATTTCCTTGATCAGT	0.323													5	13					0	0	0.000602	0	0
MCTP1	79772	broad.mit.edu	37	5	94248651	94248651	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:94248651G>A	uc003kkx.2	-	9	1381	c.1381C>T	c.(1381-1383)CTA>TTA	p.L461L	MCTP1_uc003kkv.2_Silent_p.L240L|MCTP1_uc003kkw.2_Silent_p.L194L|MCTP1_uc003kkz.2_Silent_p.L122L|MCTP1_uc003kku.2_5'UTR	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	461	C2 2.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		TTTCTGTGTAGGTCTGATAGG	0.428													63	24					0	0	0.003610	0	0
MAN2A1	4124	broad.mit.edu	37	5	109120469	109120469	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:109120469C>T	uc003kou.1	+	10	2565	c.1602C>T	c.(1600-1602)TTC>TTT	p.F534F		NM_002372	NP_002363	Q16706	MA2A1_HUMAN	mannosidase, alpha, class 2A, member 1	534	Lumenal (Potential).				mannose metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	alpha-mannosidase activity|carbohydrate binding|mannosyl-oligosaccharide 1,3-1,6-alpha-mannosidase activity|zinc ion binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3		all_cancers(142;8.66e-07)|all_epithelial(76;7.73e-09)|Prostate(80;0.000303)|Lung NSC(167;0.0186)|all_lung(232;0.0241)|Ovarian(225;0.0444)|Colorectal(57;0.0959)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;2.17e-10)|Epithelial(69;1.37e-09)|COAD - Colon adenocarcinoma(37;0.141)		TTTACTATTTCGCCCTGAGAC	0.333													11	35					0	0	0.008291	0	0
APC	324	broad.mit.edu	37	5	112174398	112174399	+	Missense_Mutation	DNP	TG	GT	GT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:112174398_112174399TG>GT	uc010jby.2	+	16	3487_3488	c.3107_3108TG>GT	c.(3106-3108)TTG>TGT	p.L1036C	APC_uc011cvt.1_Missense_Mutation_p.L1018C|APC_uc003kpz.3_Missense_Mutation_p.L1036C|APC_uc003kpy.3_Missense_Mutation_p.L1036C|APC_uc010jbz.2_Missense_Mutation_p.L753C|APC_uc010jca.2_Missense_Mutation_p.L336C	NM_001127511	NP_001120983	P25054	APC_HUMAN	adenomatous polyposis coli	1036	Ser-rich.|Responsible for down-regulation through a process mediated by direct ubiquitination.				canonical Wnt receptor signaling pathway|cell adhesion|cell cycle arrest|cell migration|cellular component disassembly involved in apoptosis|cytokinesis after mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cyclin-dependent protein kinase activity|negative regulation of microtubule depolymerization|positive regulation of apoptosis|positive regulation of cell migration|positive regulation of pseudopodium assembly|protein complex assembly|regulation of attachment of spindle microtubules to kinetochore|response to DNA damage stimulus|tight junction assembly	adherens junction|APC-Axin-1-beta-catenin complex|Axin-APC-beta-catenin-GSK3B complex|beta-catenin destruction complex|centrosome|cytosol|kinetochore|lamellipodium|lateral plasma membrane|nucleus|ruffle membrane|tight junction	beta-catenin binding|gamma-catenin binding|microtubule plus-end binding|protein kinase binding|protein kinase regulator activity	p.?(1)		large_intestine(2123)|stomach(123)|soft_tissue(55)|small_intestine(34)|breast(26)|pancreas(25)|urinary_tract(20)|lung(19)|thyroid(18)|liver(13)|central_nervous_system(10)|ovary(9)|skin(7)|upper_aerodigestive_tract(6)|adrenal_gland(6)|bone(6)|NS(5)|prostate(4)|endometrium(3)|kidney(1)|oesophagus(1)|biliary_tract(1)	2515		all_cancers(142;3.01e-27)|all_epithelial(76;2.3e-18)|all_hematologic(541;4.32e-09)|Ovarian(225;1.78e-06)|Lung NSC(167;0.000195)|Breast(839;0.000231)|all_lung(232;0.000247)|Colorectal(10;0.000355)|Prostate(80;0.00133)		OV - Ovarian serous cystadenocarcinoma(64;1.09e-113)|Epithelial(69;3.79e-112)|all cancers(49;1.67e-104)|BRCA - Breast invasive adenocarcinoma(61;0.00136)|COAD - Colon adenocarcinoma(37;0.00155)|Colorectal(14;0.00191)		GATGAGCAGTTGAACTCTGGAA	0.351		12	D|Mis|N|F|S		colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS	colorectal|pancreatic|desmoid|hepatoblastoma|glioma|other CNS			Hereditary_Desmoid_Disease|Familial_Adenomatous_Polyposis|Turcot_syndrome	TSP Lung(16;0.13)			18	31					0	0	0.004672	0	0
TSSK1B	83942	broad.mit.edu	37	5	112769798	112769799	+	Missense_Mutation	DNP	CC	GT	GT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:112769798_112769799CC>GT	uc003kqm.2	-	1	930_931	c.738_739GG>AC	c.(736-741)AAGGAC>AAACAC	p.D247H	MCC_uc003kql.3_Intron	NM_032028	NP_114417	Q9BXA7	TSSK1_HUMAN	testis-specific serine kinase 1	247	Protein kinase.				cell differentiation|multicellular organismal development|spermatogenesis		ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(2)|skin(2)|stomach(1)	5		all_cancers(142;0.0138)|all_epithelial(76;0.000445)|Colorectal(10;0.00814)|Prostate(80;0.0115)|Ovarian(225;0.156)		Epithelial(69;4.15e-08)|OV - Ovarian serous cystadenocarcinoma(64;4.49e-08)|all cancers(49;3.2e-06)|COAD - Colon adenocarcinoma(37;0.0371)|Colorectal(14;0.0449)		TAGATGAGGTCCTTGCACTCGC	0.604													5	26					0	0	0.004672	0	0
YTHDC2	64848	broad.mit.edu	37	5	112868621	112868621	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:112868621T>G	uc003kqn.2	+	5	904	c.721T>G	c.(721-723)TGC>GGC	p.C241G	YTHDC2_uc010jce.1_Missense_Mutation_p.C241G|YTHDC2_uc010jcf.1_5'UTR	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	241	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		TGGTATCCCCTGCCGTATATT	0.343													35	23					0	0	0.008740	0	0
AQPEP	206338	broad.mit.edu	37	5	115298969	115298969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:115298969G>A	uc003kro.2	+	1	819	c.655G>A	c.(655-657)GGA>AGA	p.G219R	AQPEP_uc003krp.2_RNA|uc003krn.1_5'UTR	NM_173800	NP_776161	Q6Q4G3	AMPQ_HUMAN	laeverin	219	Lumenal (Potential).				proteolysis	integral to membrane	metallopeptidase activity|zinc ion binding				0						CCTCAGGGAGGGACTCTTCCT	0.647													3	8					0	0	0.000602	0	0
SLC12A2	6558	broad.mit.edu	37	5	127516636	127516636	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:127516636C>T	uc003kus.2	+	23	3326	c.3162C>T	c.(3160-3162)ATC>ATT	p.I1054I	SLC12A2_uc010jdf.2_RNA|SLC12A2_uc010jdg.2_Silent_p.I1038I	NM_001046	NP_001037	P55011	S12A2_HUMAN	solute carrier family 12	1054	Cytoplasmic (Potential).				potassium ion transport|sodium ion transport|transepithelial ammonium transport|transepithelial chloride transport	integral to plasma membrane|membrane fraction	ammonia transmembrane transporter activity|sodium:potassium:chloride symporter activity			ovary(3)	3		all_cancers(142;0.0972)|Prostate(80;0.151)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	Epithelial(69;0.0433)|OV - Ovarian serous cystadenocarcinoma(64;0.0978)	Bumetanide(DB00887)|Potassium Chloride(DB00761)	ACTGTAAGATCAGAGTATTCA	0.338													48	103					0	0	0.003610	0	0
FBN2	2201	broad.mit.edu	37	5	127609652	127609652	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:127609652C>T	uc003kuu.2	-	61	8159	c.7720G>A	c.(7720-7722)GAA>AAA	p.E2574K		NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	2574	EGF-like 44; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		GACCCACATTCGTTGTTGTCT	0.433													10	17					0	0	0.001855	0	0
FBN2	2201	broad.mit.edu	37	5	127674737	127674737	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:127674737C>T	uc003kuu.2	-	26	3799	c.3360G>A	c.(3358-3360)AGG>AGA	p.R1120R	FBN2_uc003kuv.2_Silent_p.R1087R	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	1120	EGF-like 16; calcium-binding.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CAGGAGAAATCCTGCACTCGT	0.453													22	13					0	0	0.003954	0	0
SLC27A6	28965	broad.mit.edu	37	5	128351666	128351666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:128351666G>A	uc003kuy.2	+	6	1454	c.1058G>A	c.(1057-1059)GGA>GAA	p.G353E	SLC27A6_uc003kuz.2_Missense_Mutation_p.G353E	NM_014031	NP_054750	Q9Y2P4	S27A6_HUMAN	solute carrier family 27 (fatty acid	353					long-chain fatty acid transport|transmembrane transport|very long-chain fatty acid metabolic process	integral to membrane|sarcolemma	fatty acid transporter activity|long-chain fatty acid-CoA ligase activity|nucleotide binding				0		all_cancers(142;0.0483)|Prostate(80;0.055)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	Epithelial(69;0.171)|OV - Ovarian serous cystadenocarcinoma(64;0.186)		GACAGATTTGGAAATATAAAG	0.378													19	46					0	0	0.001523	0	0
DDX46	9879	broad.mit.edu	37	5	134121252	134121252	+	Nonsense_Mutation	SNP	C	G	G	rs141820419		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:134121252C>G	uc003kzw.2	+	11	1608	c.1440C>G	c.(1438-1440)TAC>TAG	p.Y480*	DDX46_uc003kzv.1_RNA	NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	480	Helicase ATP-binding.				mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TCTGTGTTTACGGAGGAACAG	0.373													41	24					0	0	0.002222	0	0
KDM3B	51780	broad.mit.edu	37	5	137727375	137727375	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:137727375C>T	uc003lcy.1	+	8	2254	c.2054C>T	c.(2053-2055)TCT>TTT	p.S685F	KDM3B_uc010jew.1_Missense_Mutation_p.S341F|KDM3B_uc011cys.1_Intron	NM_016604	NP_057688	Q7LBC6	KDM3B_HUMAN	jumonji domain containing 1B	685	Ser-rich.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen			ovary(3)|upper_aerodigestive_tract(2)|lung(2)|kidney(2)|central_nervous_system(1)|skin(1)	11						GATTCGGCATCTTTAGCAAAG	0.537													33	11					0	0	0.003271	0	0
ANKHD1-EIF4EBP3	404734	broad.mit.edu	37	5	139917122	139917122	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:139917122C>T	uc003lfs.1	+	31	7300	c.7176C>T	c.(7174-7176)GTC>GTT	p.V2392V	ANKHD1_uc003lfr.2_Silent_p.V2392V|ANKHD1-EIF4EBP3_uc011czh.1_Silent_p.V1148V|ANKHD1_uc003lfw.2_Silent_p.V1047V|ANKHD1_uc010jfl.2_Silent_p.V768V|ANKHD1-EIF4EBP3_uc003lfx.1_Silent_p.V546V	NM_020690	NP_065741	Q8IWZ2	Q8IWZ2_HUMAN	ANKHD1-EIF4EBP3 protein	2392						cytoplasm|nucleus	RNA binding			ovary(6)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CCAGTTTTGTCGCTCCCGTTG	0.522													11	12					0	0	0.001855	0	0
PCDHA2	56146	broad.mit.edu	37	5	140176468	140176468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140176468C>T	uc003lhd.2	+	1	2025	c.1919C>T	c.(1918-1920)GCT>GTT	p.A640V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhc.1_Missense_Mutation_p.A640V|PCDHA2_uc011czy.1_Missense_Mutation_p.A640V	NM_018905	NP_061728	Q9Y5H9	PCDA2_HUMAN	protocadherin alpha 2 isoform 1 precursor	640	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTAGACGAGGCTGACTCCCCT	0.622													15	29					0	0	0.003163	0	0
PCDHA3	56145	broad.mit.edu	37	5	140181767	140181767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140181767C>T	uc003lhf.2	+	1	985	c.985C>T	c.(985-987)CCA>TCA	p.P329S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA2_uc011czy.1_Intron|PCDHA3_uc011czz.1_Missense_Mutation_p.P329S	NM_018906	NP_061729	Q9Y5H8	PCDA3_HUMAN	protocadherin alpha 3 isoform 1 precursor	329	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(6)|skin(2)	8			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AGGAAATCCCCCAATGTCAGA	0.378													7	38					0	0	0.001984	0	0
PCDHA4	56144	broad.mit.edu	37	5	140187042	140187042	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140187042C>T	uc003lhi.2	+	1	371	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhh.1_Silent_p.I90I|PCDHA4_uc011daa.1_Silent_p.I90I	NM_018907	NP_061730	Q9UN74	PCDA4_HUMAN	protocadherin alpha 4 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(4)|skin(2)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGGGAGG	0.622													21	49					0	0	0.002780	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202066	140202066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140202066G>A	uc003lhl.2	+	1	706	c.706G>A	c.(706-708)GAT>AAT	p.D236N	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.D236N|PCDHA5_uc003lhj.1_Missense_Mutation_p.D236N	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	236	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGATGCTAATGATAACGCCCC	0.378													40	28					0	0	0.002222	0	0
PCDHA5	56143	broad.mit.edu	37	5	140202820	140202820	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140202820C>T	uc003lhl.2	+	1	1460	c.1460C>T	c.(1459-1461)GCC>GTC	p.A487V	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.A487V|PCDHA5_uc003lhj.1_Missense_Mutation_p.A487V	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	487	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAGGAGAACGCCCTGGTGTCC	0.662													15	31					0	0	0.006122	0	0
PCDHA6	56142	broad.mit.edu	37	5	140207946	140207946	+	Silent	SNP	C	T	T	rs140846988	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140207946C>T	uc003lho.2	+	1	297	c.270C>T	c.(268-270)ATC>ATT	p.I90I	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.I90I|PCDHA6_uc011dab.1_Silent_p.I90I	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	90	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTCTCGGATCGACCGCGAGG	0.602													7	141					0	0	0.008291	0	0
PCDHA8	56140	broad.mit.edu	37	5	140222527	140222527	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140222527G>A	uc003lhs.2	+	1	1621	c.1621G>A	c.(1621-1623)GGC>AGC	p.G541S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhr.1_Missense_Mutation_p.G541S	NM_018911	NP_061734	Q9Y5H6	PCDA8_HUMAN	protocadherin alpha 8 isoform 1 precursor	541	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			upper_aerodigestive_tract(1)|ovary(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGCGACGCGGGCGTGCCGCC	0.677													18	54					0	0	0.006122	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235919	140235919	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140235919G>C	uc003lhx.2	+	1	286	c.286G>C	c.(286-288)GGG>CGG	p.G96R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.G96R|PCDHA10_uc011dad.1_Missense_Mutation_p.G96R	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	96	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAGCTGTGCGGGCGGAGCGT	0.562													7	136					0	0	0.006214	0	0
PCDHA10	56139	broad.mit.edu	37	5	140235929	140235929	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140235929T>C	uc003lhx.2	+	1	296	c.296T>C	c.(295-297)GTG>GCG	p.V99A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Missense_Mutation_p.V99A|PCDHA10_uc011dad.1_Missense_Mutation_p.V99A	NM_018901	NP_061724	Q9Y5I2	PCDAA_HUMAN	protocadherin alpha 10 isoform 1 precursor	99	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			ovary(2)|skin(2)|breast(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCGGAGCGTGGAGTGCAGC	0.562													5	129					0	0	0.001984	0	0
PCDHAC1	56135	broad.mit.edu	37	5	140307248	140307248	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140307248C>T	uc003lih.2	+	1	947	c.771C>T	c.(769-771)GCC>GCT	p.A257A	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lig.1_Silent_p.A257A	NM_018898	NP_061721	Q9H158	PCDC1_HUMAN	protocadherin alpha subfamily C, 1 isoform 1	257	Extracellular (Potential).|Cadherin 3.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GAGTTCAAGCCTTGGATCCAG	0.532													12	21					0	0	0.001855	0	0
PCDHB1	29930	broad.mit.edu	37	5	140432718	140432718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140432718G>A	uc003lik.1	+	1	1740	c.1663G>A	c.(1663-1665)GAC>AAC	p.D555N		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	555	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTCCTAGATGACAATGACAA	0.493													15	33					0	0	0.002450	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517294	140517294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140517294G>A	uc003liq.2	+	1	2495	c.2278G>A	c.(2278-2280)GCC>ACC	p.A760T		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	760	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGACTCAGGGGCCGGCGAGTT	0.587													29	63					0	0	0.002096	0	0
PCDHB16	57717	broad.mit.edu	37	5	140562967	140562967	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140562967C>T	uc003liv.2	+	1	1988	c.833C>T	c.(832-834)TCA>TTA	p.S278L	PCDHB16_uc010jfw.1_Intron	NM_020957	NP_066008	Q9NRJ7	PCDBG_HUMAN	protocadherin beta 16 precursor	278	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAAAAATATCATACACACTC	0.468													8	32					0	0	0.004482	0	0
PCDHB11	56125	broad.mit.edu	37	5	140581615	140581615	+	Silent	SNP	G	A	A	rs148762649		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140581615G>A	uc003liy.2	+	1	2268	c.2268G>A	c.(2266-2268)ACG>ACA	p.T756T	PCDHB11_uc011daj.1_Silent_p.T391T	NM_018931	NP_061754	Q9Y5F2	PCDBB_HUMAN	protocadherin beta 11 precursor	756	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGTGTCTGACGGGAGGTTCCG	0.527													42	29					0	0	0.002222	0	0
PCDHB15	56121	broad.mit.edu	37	5	140626282	140626282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140626282G>A	uc003lje.2	+	1	1136	c.1136G>A	c.(1135-1137)GGA>GAA	p.G379E		NM_018935	NP_061758	Q9Y5E8	PCDBF_HUMAN	protocadherin beta 15 precursor	379	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|breast(2)|skin(1)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGGGAAAATGGAAAAATGATT	0.438													10	17					0	0	0.008291	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711422	140711422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140711422C>T	uc003lji.1	+	1	1171	c.1171C>T	c.(1171-1173)CCC>TCC	p.P391S	PCDHGA1_uc011dan.1_Missense_Mutation_p.P391S	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	391	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TGGAAATTTACCCTTTAAATT	0.393													9	23					0	0	0.004482	0	0
PCDHGA1	56114	broad.mit.edu	37	5	140711932	140711932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140711932G>A	uc003lji.1	+	1	1681	c.1681G>A	c.(1681-1683)GAG>AAG	p.E561K	PCDHGA1_uc011dan.1_Missense_Mutation_p.E561K	NM_018912	NP_061735	Q9Y5H4	PCDG1_HUMAN	protocadherin gamma subfamily A, 1 isoform 1	561	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(1)|breast(1)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CAACGCGCCCGAGATCCTGTA	0.647													58	23					0	0	0.003610	0	0
PCDHGA3	56112	broad.mit.edu	37	5	140723892	140723892	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140723892C>T	uc003ljm.1	+	1	292	c.292C>T	c.(292-294)CAG>TAG	p.Q98*	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc010jfx.1_5'UTR|PCDHGA3_uc011dap.1_Nonsense_Mutation_p.Q98*	NM_018916	NP_061739	Q9Y5H0	PCDG3_HUMAN	protocadherin gamma subfamily A, 3 isoform 1	98	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCTCTGCGCTCAGATCCCGCT	0.453													20	12					0	0	0.008871	0	0
PCDHGA5	56110	broad.mit.edu	37	5	140744287	140744287	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140744287C>T	uc003lju.1	+	1	390	c.390C>T	c.(388-390)TTC>TTT	p.F130F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc011das.1_Silent_p.F130F	NM_018918	NP_061741	Q9Y5G8	PCDG5_HUMAN	protocadherin gamma subfamily A, 5 isoform 1	130	Cadherin 1.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATGATAACTTCCCGCGTTTCC	0.433													5	11					0	0	0.001168	0	0
PCDHGA8	9708	broad.mit.edu	37	5	140772878	140772878	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:140772878C>T	uc003lkd.1	+	1	1396	c.498C>T	c.(496-498)TCC>TCT	p.S166S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkb.3_Silent_p.S166S	NM_032088	NP_114477	Q9Y5G5	PCDG8_HUMAN	protocadherin gamma subfamily A, 8 isoform 1	166	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GCGTGAACTCCCTCCAGAGCT	0.557													17	30					0	0	0.008871	0	0
RELL2	285613	broad.mit.edu	37	5	141019180	141019180	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:141019180C>T	uc003lli.2	+	5	1315	c.467C>T	c.(466-468)CCC>CTC	p.P156L	HDAC3_uc003llf.2_5'Flank|HDAC3_uc010jgd.1_5'Flank|HDAC3_uc010jge.1_5'Flank|RELL2_uc003llh.2_Missense_Mutation_p.P156L|RELL2_uc003llg.2_Missense_Mutation_p.P90L|RELL2_uc010jgf.2_Missense_Mutation_p.P90L|FCHSD1_uc010jgg.2_3'UTR|FCHSD1_uc003llj.2_RNA|FCHSD1_uc003llk.2_3'UTR	NM_001130029	NP_001123501	Q8NC24	RELL2_HUMAN	RELT-like 2	156						integral to membrane|plasma membrane					0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAAAGCCGCCCCCGGACAGGG	0.647													4	18					0	0	0.000248	0	0
PCDH1	5097	broad.mit.edu	37	5	141243292	141243292	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:141243292G>A	uc003llq.2	-	3	2721	c.2604C>T	c.(2602-2604)ATC>ATT	p.I868I	PCDH1_uc003llp.2_Silent_p.I868I|PCDH1_uc011dbf.1_Silent_p.I846I	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	868	Helical; (Potential).				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		CCGCCAGGGCGATGAGCAAGG	0.572													40	115					0	0	0.003214	0	0
SPINK5	11005	broad.mit.edu	37	5	147499859	147499859	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:147499859G>A	uc003lox.2	+	26	2516	c.2443G>A	c.(2443-2445)GAA>AAA	p.E815K	SPINK5_uc010jgr.2_Missense_Mutation_p.E796K|SPINK5_uc003low.2_Missense_Mutation_p.E815K|SPINK5_uc003loy.2_Missense_Mutation_p.E815K	NM_006846	NP_006837	Q9NQ38	ISK5_HUMAN	serine peptidase inhibitor, Kazal type 5 isoform	815	Kazal-like 12.				anagen|epithelial cell differentiation|extracellular matrix organization|hair cell differentiation|negative regulation of angiogenesis|negative regulation of immune response|regulation of T cell differentiation	cell cortex|cytosol|endoplasmic reticulum membrane|extracellular region|lamellar body|perinuclear region of cytoplasm	serine-type endopeptidase inhibitor activity			skin(2)|ovary(1)|breast(1)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCCCCCCAGGGAAAGGGAAGC	0.388													11	4					0	0	0.000978	0	0
HTR4	3360	broad.mit.edu	37	5	147928263	147928263	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:147928263C>T	uc003lpn.2	-	4	485	c.321G>A	c.(319-321)TCG>TCA	p.S107S	HTR4_uc010jgu.1_RNA|HTR4_uc003lpi.1_Silent_p.S107S|HTR4_uc003lpj.1_Silent_p.S107S|HTR4_uc003lpk.2_Silent_p.S107S|HTR4_uc011dby.1_Silent_p.S107S|HTR4_uc003lpl.2_Silent_p.S107S|HTR4_uc003lpm.2_Silent_p.S107S|HTR4_uc010jgv.2_RNA|HTR4_uc003lpo.1_Silent_p.S107S	NM_000870	NP_000861	Q13639	5HT4R_HUMAN	serotonin 5-HT4 receptor isoform b	107	Helical; Name=3; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|positive regulation of cell proliferation	endosome|integral to plasma membrane|membrane fraction	serotonin receptor activity			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)		Cisapride(DB00604)|Rizatriptan(DB00953)|Tegaserod(DB01079)|Zolmitriptan(DB00315)	GGTGAAAAATCGATGCCGTTG	0.488													4	1					0	0	0.001168	0	0
SLC6A7	6534	broad.mit.edu	37	5	149581965	149581965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:149581965G>A	uc003lrr.2	+	7	1285	c.914G>A	c.(913-915)GGG>GAG	p.G305E		NM_014228	NP_055043	Q99884	SC6A7_HUMAN	solute carrier family 6, member 7	305	Helical; Name=6; (Potential).					integral to plasma membrane|membrane fraction	neurotransmitter:sodium symporter activity|proline:sodium symporter activity				0		all_hematologic(541;0.224)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)		L-Proline(DB00172)	GGCTTCGGGGGGCTCCTCACC	0.572													23	53					0	0	0.004656	0	0
GRIA1	2890	broad.mit.edu	37	5	153149817	153149817	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:153149817G>A	uc003lva.3	+	13	2477	c.2112G>A	c.(2110-2112)ATG>ATA	p.M704I	GRIA1_uc003luy.3_Missense_Mutation_p.M704I|GRIA1_uc003luz.3_Missense_Mutation_p.M609I|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Missense_Mutation_p.M624I|GRIA1_uc011dcx.1_Missense_Mutation_p.M635I|GRIA1_uc011dcy.1_Missense_Mutation_p.M714I|GRIA1_uc011dcz.1_Missense_Mutation_p.M714I	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	704	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AGGAGGGGATGATTCGAGTGA	0.488													22	16					0	0	0.001523	0	0
FAM71B	153745	broad.mit.edu	37	5	156589596	156589596	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:156589596G>A	uc003lwn.2	-	2	1780	c.1680C>T	c.(1678-1680)ATC>ATT	p.I560I		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	560						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TCTTAGCCACGATATCTACCT	0.483													153	332					0	0	0.003610	0	0
FAM71B	153745	broad.mit.edu	37	5	156589651	156589651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:156589651C>T	uc003lwn.2	-	2	1725	c.1625G>A	c.(1624-1626)AGG>AAG	p.R542K		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	542						nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AGGAGTGGCCCTGAGGCTCCT	0.463													147	304					0	0	0.003610	0	0
RNF145	153830	broad.mit.edu	37	5	158588570	158588571	+	Missense_Mutation	DNP	CT	GG	GG			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:158588570_158588571CT>GG	uc003lxp.2	-	10	1642_1643	c.1329_1330AG>CC	c.(1327-1332)CCAGTG>CCCCTG	p.V444L	RNF145_uc011ddy.1_Missense_Mutation_p.V458L|RNF145_uc003lxo.1_Missense_Mutation_p.V472L|RNF145_uc011ddz.1_Missense_Mutation_p.V461L|RNF145_uc010jiq.1_Missense_Mutation_p.V474L	NM_144726	NP_653327	Q96MT1	RN145_HUMAN	ring finger protein 145	444						integral to membrane	zinc ion binding			ovary(3)|lung(1)|skin(1)	5	Renal(175;0.00196)	Medulloblastoma(196;0.0523)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATGTTTTCCACTGGCTCTTTTC	0.401													24	7					0	0	0.004672	0	0
GABRB2	2561	broad.mit.edu	37	5	160753374	160753374	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:160753374C>T	uc003lys.1	-	10	1409	c.1191_splice	c.e10+1	p.T397_splice	GABRB2_uc011deh.1_Intron|GABRB2_uc003lyr.1_Intron|GABRB2_uc003lyt.1_Intron|GABRB2_uc010jiu.1_Intron	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta						gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	GGCTATCTAACCGTATACAGA	0.214													8	21					0	0	0.003080	0	0
GABRB2	2561	broad.mit.edu	37	5	160761766	160761766	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:160761766C>T	uc003lys.1	-	8	1043	c.825G>A	c.(823-825)GTG>GTA	p.V275V	GABRB2_uc011deh.1_Silent_p.V114V|GABRB2_uc003lyr.1_Silent_p.V275V|GABRB2_uc003lyt.1_Silent_p.V275V|GABRB2_uc010jiu.1_Silent_p.V212V	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	275	Helical; (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	TACCTAATGCCACCCTTGCAG	0.438													22	16					0	0	0.002780	0	0
ODZ2	57451	broad.mit.edu	37	5	167687292	167687292	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:167687292G>A	uc010jjd.2	+	28	7410	c.7410G>A	c.(7408-7410)GTG>GTA	p.V2470V	ODZ2_uc003lzr.3_Silent_p.V2240V|ODZ2_uc003lzt.3_Silent_p.V1843V|ODZ2_uc010jje.2_Silent_p.V1734V	NM_001122679	NP_001116151			odz, odd Oz/ten-m homolog 2											ovary(6)|central_nervous_system(4)	10	Renal(175;0.00124)|Lung NSC(126;0.136)|all_lung(126;0.242)	Medulloblastoma(196;0.0241)|all_neural(177;0.026)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0444)|OV - Ovarian serous cystadenocarcinoma(192;0.0694)|Epithelial(171;0.124)		CCATAGATGTGAAAAGCTGGC	0.418													38	20					0	0	0.007835	0	0
SLIT3	6586	broad.mit.edu	37	5	168096985	168096985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:168096985C>T	uc003mab.2	-	35	4559	c.4139G>A	c.(4138-4140)GGA>GAA	p.G1380E	SLIT3_uc010jjg.2_Missense_Mutation_p.G1387E	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	1380	EGF-like 8.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CACACATTTTCCATGGTGGCA	0.567													6	10					0	0	0.001984	0	0
SLIT3	6586	broad.mit.edu	37	5	168222552	168222552	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:168222552G>A	uc003mab.2	-	10	1387	c.967C>T	c.(967-969)CCT>TCT	p.P323S	SLIT3_uc010jjg.2_Missense_Mutation_p.P323S|SLIT3_uc010jji.2_Missense_Mutation_p.P323S|SLIT3_uc003mac.1_Missense_Mutation_p.P120S	NM_003062	NP_003053	O75094	SLIT3_HUMAN	slit homolog 3 precursor	323	LRR 7.				apoptosis involved in luteolysis|axon extension involved in axon guidance|cellular response to hormone stimulus|negative chemotaxis|negative regulation of cell growth|negative regulation of chemokine-mediated signaling pathway|response to cortisol stimulus|Roundabout signaling pathway	extracellular space|mitochondrion	calcium ion binding|Roundabout binding			ovary(3)|skin(1)	4	Renal(175;0.000159)|Lung NSC(126;0.0174)|all_lung(126;0.0392)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			GCTCCTGCAGGGATGGCTTTG	0.483													18	46					0	0	0.008871	0	0
DOCK2	1794	broad.mit.edu	37	5	169141077	169141077	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:169141077C>T	uc003maf.2	+	18	1785	c.1705C>T	c.(1705-1707)CCT>TCT	p.P569S	DOCK2_uc011der.1_RNA|DOCK2_uc010jjm.2_Missense_Mutation_p.P61S|DOCK2_uc010jjl.1_Missense_Mutation_p.P87S	NM_004946	NP_004937	Q92608	DOCK2_HUMAN	dedicator of cytokinesis 2	569	DHR-1.				actin cytoskeleton organization|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|endomembrane system|membrane	electron carrier activity|GTP binding|GTPase binding|heme binding|Rac guanyl-nucleotide exchange factor activity|T cell receptor binding			ovary(5)|pancreas(2)	7	Renal(175;0.000159)|Lung NSC(126;0.0221)|all_lung(126;0.0337)	Medulloblastoma(196;0.0399)|all_neural(177;0.0966)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			CCTGACCCTTCCTTCTTATCG	0.567													12	34					0	0	0.001368	0	0
STK10	6793	broad.mit.edu	37	5	171510058	171510058	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:171510058G>A	uc003mbo.1	-	11	2016	c.1716C>T	c.(1714-1716)CTC>CTT	p.L572L		NM_005990	NP_005981	O94804	STK10_HUMAN	serine/threonine kinase 10	572							ATP binding|protein serine/threonine kinase activity			ovary(3)|lung(2)|testis(1)|breast(1)|pancreas(1)	8	Renal(175;0.000159)|Lung NSC(126;0.0056)|all_lung(126;0.0094)	Medulloblastoma(196;0.00868)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			CTTCTTTCTGGAGCAGCCGAA	0.458													15	38					0	0	0.008871	0	0
UBTD2	92181	broad.mit.edu	37	5	171638903	171638904	+	Missense_Mutation	DNP	GA	AT	AT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:171638903_171638904GA>AT	uc003mbp.1	-	3	761_762	c.635_636TC>AT	c.(634-636)ATC>AAT	p.I212N		NM_152277	NP_689490	Q8WUN7	UBTD2_HUMAN	dendritic cell-derived ubiquitin-like protein	212	Ubiquitin-like.					cytoplasm					0	Renal(175;0.000159)|Lung NSC(126;0.00976)|all_lung(126;0.0156)	Medulloblastoma(196;0.00853)|all_neural(177;0.026)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			AGTCCTTTGGGATCTTCAGCTC	0.515													19	32					0	0	0.004672	0	0
DRD1	1812	broad.mit.edu	37	5	174868954	174868954	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:174868954C>T	uc003mcz.2	-	2	2094	c.1149G>A	c.(1147-1149)AAG>AAA	p.K383K		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	383	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	GATTGCACTCCTTGGAGATGG	0.537													43	23					0	0	0.002222	0	0
KIAA1191	57179	broad.mit.edu	37	5	175774788	175774788	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:175774788G>A	uc003mdw.2	-	9	1105	c.733C>T	c.(733-735)CGA>TGA	p.R245*	KIAA1191_uc003mdx.2_Nonsense_Mutation_p.R226*|KIAA1191_uc003mdy.2_Nonsense_Mutation_p.R245*|KIAA1191_uc003mea.2_Nonsense_Mutation_p.R38*|KIAA1191_uc003mdz.2_RNA	NM_020444	NP_065177	Q96A73	K1191_HUMAN	hypothetical protein LOC57179 isoform a	245							protein binding			ovary(1)	1	all_cancers(89;0.00575)|Renal(175;0.000269)|Lung NSC(126;0.0105)|all_lung(126;0.0168)	Medulloblastoma(196;0.0208)|all_neural(177;0.0416)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	Kidney(146;0.101)		TGGGCTCCTCGGTAGGCCTGG	0.512													23	12					0	0	0.001882	0	0
CDHR2	54825	broad.mit.edu	37	5	176011610	176011610	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:176011610G>A	uc003mem.1	+	19	2394	c.2328G>A	c.(2326-2328)TTG>TTA	p.L776L	CDHR2_uc003men.1_Silent_p.L776L	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	776	Cadherin 7.|Extracellular (Potential).				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						TCTTCAACTTGACAGTGAGTG	0.612													21	12					0	0	0.001523	0	0
GRM6	2916	broad.mit.edu	37	5	178418980	178418981	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:178418980_178418981GG>AA	uc003mjr.2	-	2	787_788	c.608_609CC>TT	c.(607-609)GCC>GTT	p.A203V	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	203	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		TGTCCACCATGGCCTGCGCCTG	0.614													12	6					0	0	0.004672	0	0
GRM6	2916	broad.mit.edu	37	5	178419001	178419001	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:178419001G>A	uc003mjr.2	-	2	767	c.588C>T	c.(586-588)CCC>CCT	p.P196P	GRM6_uc010jla.1_5'Flank|GRM6_uc003mjs.1_5'Flank	NM_000843	NP_000834	O15303	GRM6_HUMAN	glutamate receptor, metabotropic 6 precursor	196	Extracellular (Potential).				detection of visible light|visual perception	integral to plasma membrane				lung(4)|ovary(2)|breast(1)|pancreas(1)	8	all_cancers(89;0.000828)|Renal(175;0.000159)|all_epithelial(37;0.000167)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_cancers(40;0.0156)|all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.245)		GGTAGGAGTCGGGTGGCACCA	0.622													6	13					0	0	0.001168	0	0
TBC1D9B	23061	broad.mit.edu	37	5	179306098	179306098	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:179306098G>A	uc003mlh.2	-	9	1553	c.1516C>T	c.(1516-1518)CTG>TTG	p.L506L	TBC1D9B_uc003mli.2_Silent_p.L506L|TBC1D9B_uc003mlj.2_Silent_p.L506L	NM_198868	NP_942568	Q66K14	TBC9B_HUMAN	TBC1 domain family, member 9B (with GRAM domain)	506						integral to membrane|intracellular	calcium ion binding|Rab GTPase activator activity			breast(1)|skin(1)	2	all_cancers(89;0.000197)|all_epithelial(37;6.84e-05)|Renal(175;0.000159)|Lung NSC(126;0.00136)|all_lung(126;0.00243)	all_cancers(40;0.0236)|Medulloblastoma(196;0.00498)|all_neural(177;0.0138)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			ATACCCTTCAGGACCAGTGCC	0.627													12	11					0	0	0.000978	0	0
FLT4	2324	broad.mit.edu	37	5	180030269	180030269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:180030269C>T	uc003mlz.3	-	30	4094	c.4015G>A	c.(4015-4017)GAG>AAG	p.E1339K		NM_182925	NP_891555	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 1	Error:Variant_position_missing_in_P35916_after_alignment					positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	TCCGACAGCTCCCCATACTCG	0.642									Congenital_Hereditary_Lymphedema				18	8					0	0	0.006122	0	0
FLT4	2324	broad.mit.edu	37	5	180055994	180055994	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:180055994G>A	uc003mma.3	-	8	1070	c.991C>T	c.(991-993)CCC>TCC	p.P331S	FLT4_uc003mlz.3_Missense_Mutation_p.P331S|FLT4_uc003mmb.1_5'UTR|FLT4_uc011dgy.1_Missense_Mutation_p.P331S|FLT4_uc011dgz.1_Silent_p.I274I	NM_002020	NP_002011	P35916	VGFR3_HUMAN	fms-related tyrosine kinase 4 isoform 2	331	Ig-like C2-type 4.|Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|protein phosphatase binding|vascular endothelial growth factor receptor activity			lung(7)|skin(2)|ovary(2)|stomach(1)|central_nervous_system(1)|breast(1)|kidney(1)	15	all_cancers(89;2.21e-05)|all_epithelial(37;5.29e-06)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.114)	all_cancers(40;0.00245)|Medulloblastoma(196;0.0133)|all_neural(177;0.0199)|all_hematologic(541;0.163)|Ovarian(839;0.238)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.134)	Sorafenib(DB00398)|Sunitinib(DB01268)	CTGATGAAGGGATTTTCTGCC	0.652									Congenital_Hereditary_Lymphedema				6	26					0	0	0.001168	0	0
BTNL8	79908	broad.mit.edu	37	5	180374603	180374603	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:180374603G>A	uc003mmp.2	+	4	999	c.765G>A	c.(763-765)AAG>AAA	p.K255K	BTNL8_uc003mmq.2_Silent_p.K255K|BTNL8_uc011dhg.1_Silent_p.K130K|BTNL8_uc010jll.2_Silent_p.K255K|BTNL8_uc010jlm.2_Silent_p.K139K|BTNL8_uc011dhh.1_Silent_p.K71K	NM_001040462	NP_001035552	Q6UX41	BTNL8_HUMAN	butyrophilin-like 8 isoform 2 precursor	255	Helical; (Potential).					integral to membrane				upper_aerodigestive_tract(1)|skin(1)	2	all_cancers(89;3.37e-05)|all_epithelial(37;3.77e-06)|Renal(175;0.000159)|Lung NSC(126;0.00211)|all_lung(126;0.00371)|Breast(19;0.114)	all_cancers(40;0.0801)|Medulloblastoma(196;0.0392)|all_neural(177;0.0529)|all_hematologic(541;0.191)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			TTGGACTGAAGATTTTCTTCT	0.473													57	124					0	0	0.003610	0	0
BPHL	670	broad.mit.edu	37	6	3137651	3137651	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:3137651C>T	uc003mva.2	+	5	637	c.588C>T	c.(586-588)CTC>CTT	p.L196L	BPHL_uc003muz.2_RNA|BPHL_uc011dht.1_RNA|BPHL_uc003muy.2_Silent_p.L179L	NM_004332	NP_004323	Q86WA6	BPHL_HUMAN	biphenyl hydrolase-like precursor	196					cellular amino acid metabolic process|response to toxin	mitochondrion	hydrolase activity				0	Ovarian(93;0.0386)	all_hematologic(90;0.108)				TAGAAGCCCTCTATGGGTATG	0.438													46	79					0	0	0.002522	0	0
C6orf218	221718	broad.mit.edu	37	6	10429936	10429936	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:10429936G>A	uc003myz.2	-	3		c.1100C>T				NR_027793				Homo sapiens chromosome 6 open reading frame 218, mRNA (cDNA clone IMAGE:3917693).												0	Breast(50;0.0427)|Ovarian(93;0.0991)	all_hematologic(90;0.124)				CCACAAAAAAGAAAAAGAAGC	0.353													4	1					0	0	0.000248	0	0
SIRT5	23408	broad.mit.edu	37	6	13612093	13612093	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:13612093C>T	uc003nay.2	+	10	1225	c.929C>T	c.(928-930)TCT>TTT	p.S310F	SIRT5_uc003nax.2_Missense_Mutation_p.S202F|SIRT5_uc011dit.1_Missense_Mutation_p.S292F	NM_012241	NP_036373	Q9NXA8	SIRT5_HUMAN	sirtuin 5 isoform 1	310					chromatin silencing|protein ADP-ribosylation|protein deacetylation	mitochondrial intermembrane space|mitochondrial matrix	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides|NAD+ ADP-ribosyltransferase activity|NAD+ binding|zinc ion binding			skin(2)|upper_aerodigestive_tract(1)	3	Breast(50;0.00669)|Ovarian(93;0.0634)	all_hematologic(90;0.117)	Epithelial(50;0.176)		Suramin(DB04786)	GAAACTGTTTCTTAAGTGTCC	0.438													67	186					0	0	0.003610	0	0
SCGN	10590	broad.mit.edu	37	6	25670232	25670232	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:25670232C>T	uc003nfb.2	+	6	602	c.399C>T	c.(397-399)TTC>TTT	p.F133F	SCGN_uc010jpz.2_Missense_Mutation_p.S43F	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	133	EF-hand 3.					extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						CACAGAACTTCCTCCGAGACC	0.373													53	236					0	0	0.003610	0	0
SCGN	10590	broad.mit.edu	37	6	25689431	25689431	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:25689431C>T	uc003nfb.2	+	8	762	c.559C>T	c.(559-561)CAA>TAA	p.Q187*	SCGN_uc010jpz.2_Nonsense_Mutation_p.Q78*	NM_006998	NP_008929	O76038	SEGN_HUMAN	secretagogin precursor	187						extracellular region|transport vesicle membrane	calcium ion binding			ovary(2)|pancreas(1)	3						CTTCCTTCTCCAATTTAAAAT	0.368													12	82					0	0	0.002450	0	0
SLC17A1	6568	broad.mit.edu	37	6	25799087	25799087	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:25799087G>A	uc003nfh.3	-	12	1446	c.1330C>T	c.(1330-1332)CTA>TTA	p.L444L	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.L442L|SLC17A1_uc010jqc.1_Silent_p.L388L	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	444	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						TAGAAAATTAGGCCAGTCACA	0.393													48	34					0	0	0.003610	0	0
SLC17A1	6568	broad.mit.edu	37	6	25813131	25813131	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:25813131G>A	uc003nfh.3	-	8	941	c.825C>T	c.(823-825)TTC>TTT	p.F275F	SLC17A1_uc011djy.1_RNA|SLC17A1_uc010jqb.1_Silent_p.F273F|SLC17A1_uc010jqc.1_Intron	NM_005074	NP_005065	Q14916	NPT1_HUMAN	solute carrier family 17 (sodium phosphate),	275	Helical; (Potential).				sodium ion transport|urate metabolic process	integral to plasma membrane|membrane fraction	sodium-dependent phosphate transmembrane transporter activity|symporter activity			ovary(3)|pancreas(1)	4						TATGTGACCAGAAAAACGTAA	0.358													31	19					0	0	0.002096	0	0
HIST1H2BE	8344	broad.mit.edu	37	6	26184054	26184054	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:26184054C>T	uc003ngt.2	+	1	31	c.31C>T	c.(31-33)CCG>TCG	p.P11S		NM_003523	NP_003514	P62807	H2B1C_HUMAN	histone cluster 1, H2be	11					defense response to bacterium|nucleosome assembly	nucleosome|nucleus	DNA binding|protein binding				0						CGCTCCCGCCCCGAAGAAGGG	0.527													21	67					0	0	0.008871	0	0
HIST1H3D	8351	broad.mit.edu	37	6	26197375	26197376	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:26197375_26197376CC>TT	uc003ngv.2	-	2	500_501	c.103_104GG>AA	c.(103-105)GGC>AAC	p.G35N	HIST1H2BF_uc003ngx.2_5'Flank	NM_003530	NP_003521	P68431	H31_HUMAN	histone cluster 1, H3d	35					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding				0		all_hematologic(11;0.196)				CTTCTTCACGCCGCCGGTGGCT	0.653													17	46					0	0	0.004672	0	0
BTN1A1	696	broad.mit.edu	37	6	26509300	26509300	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:26509300G>A	uc003nif.3	+	7	1499	c.1479G>A	c.(1477-1479)AAG>AAA	p.K493K		NM_001732	NP_001723	Q13410	BT1A1_HUMAN	butyrophilin, subfamily 1, member A1 precursor	493	Cytoplasmic (Potential).					extracellular region|integral to plasma membrane	receptor activity			ovary(1)|skin(1)	2						ACCTTTCTAAGGAGATCCCAT	0.547													40	32					0	0	0.008740	0	0
ZNF391	346157	broad.mit.edu	37	6	27368374	27368374	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:27368374G>A	uc003njf.1	+	3	743	c.225G>A	c.(223-225)CAG>CAA	p.Q75Q		NM_001076781	NP_001070249	Q9UJN7	ZN391_HUMAN	zinc finger protein 391	75					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(2)|skin(1)	3						ACGCACAACAGAAAATTCCAA	0.393													41	47					0	0	0.002222	0	0
HIST1H3J	8356	broad.mit.edu	37	6	27858434	27858434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:27858434G>A	uc003nka.2	-	1	137	c.137C>T	c.(136-138)ACC>ATC	p.T46I	HIST1H2BO_uc003nkc.1_5'Flank	NM_003535	NP_003526	P68431	H31_HUMAN	histone cluster 1, H3j	46					blood coagulation|nucleosome assembly|regulation of gene silencing|S phase	nucleoplasm|nucleosome	DNA binding|protein binding			ovary(1)	1						CAAGGCCACGGTGCCTGGCCT	0.632													10	54					0	0	0.008291	0	0
ZNF193	7746	broad.mit.edu	37	6	28194891	28194891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:28194891C>T	uc003nkq.1	+	2	144	c.29C>T	c.(28-30)TCC>TTC	p.S10F	ZNF193_uc003nkr.1_Missense_Mutation_p.S10F|ZNF193_uc010jqz.1_Missense_Mutation_p.S10F	NM_006299	NP_006290	O15535	ZN193_HUMAN	zinc finger protein 193	10					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GAGGTTTTATCCCTGGGTGTT	0.463													7	42					0	0	0.004482	0	0
SCAND3	114821	broad.mit.edu	37	6	28554089	28554089	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:28554089C>T	uc003nlo.2	-	1	1024	c.406G>A	c.(406-408)GAA>AAA	p.E136K	uc003nlp.1_5'Flank	NM_052923	NP_443155	Q6R2W3	SCND3_HUMAN	SCAN domain containing 3	136					DNA integration|viral reproduction	nucleus	DNA binding|protein dimerization activity|sequence-specific DNA binding transcription factor activity			ovary(1)	1						TGTCTAGGTTCATCAAGCTCC	0.517													38	204					0	0	0.002522	0	0
PRR3	80742	broad.mit.edu	37	6	30525943	30525943	+	Silent	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:30525943G>T	uc003nqi.1	+	2	489	c.123G>T	c.(121-123)CTG>CTT	p.L41L	GNL1_uc011dmi.1_5'Flank|GNL1_uc011dmj.1_5'Flank|GNL1_uc011dmk.1_5'Flank|GNL1_uc003nqh.2_5'Flank|PRR3_uc003nqj.1_Intron	NM_025263	NP_079539	P79522	PRR3_HUMAN	proline-rich protein 3 isoform a	41	Pro-rich.						nucleic acid binding|zinc ion binding				0						CCAGCCTTCTGGGCCCTCCCC	0.483													12	65					0.000151284	0.000211935	0.001855	1	0
BAT2	7916	broad.mit.edu	37	6	31595634	31595634	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:31595634C>T	uc003nvb.3	+	12	1632	c.1383C>T	c.(1381-1383)TCC>TCT	p.S461S	BAT2_uc011dnv.1_RNA|BAT2_uc003nvc.3_Silent_p.S461S	NM_080686	NP_542417	P48634	PRC2A_HUMAN	HLA-B associated transcript-2	461	4 X 57 AA type A repeats.|2 X type B repeats.					cytoplasm|nucleus	protein binding				0						CTGAGATTTCCCTGGCAGTGG	0.627													34	18					0	0	0.006230	0	0
LY6G6F	259215	broad.mit.edu	37	6	31675732	31675732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:31675732C>T	uc003nwa.1	+	3	467	c.467C>T	c.(466-468)TCT>TTT	p.S156F	BAT5_uc011dnz.1_Intron|LY6G6F_uc003nwb.1_Missense_Mutation_p.S156F	NM_001003693	NP_001003693	Q5SQ64	LY66F_HUMAN	G6f protein precursor	156	Extracellular (Potential).					integral to membrane|plasma membrane				breast(1)|central_nervous_system(1)	2						CGCATGGACTCTGTGACCTGG	0.622													70	226					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32012804	32012804	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:32012804G>A	uc003nzl.2	-	32	11102	c.10900C>T	c.(10900-10902)CTC>TTC	p.L3634F	TNXB_uc003nzg.1_Missense_Mutation_p.L65F|TNXB_uc003nzh.1_Missense_Mutation_p.L103F	NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	3681	Fibronectin type-III 28.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TCAGCTGAGAGGGGCCCCAGG	0.642													24	67					0	0	0.005443	0	0
TNXB	7148	broad.mit.edu	37	6	32037466	32037466	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:32037466G>A	uc003nzl.2	-	15	5653	c.5451C>T	c.(5449-5451)CCC>CCT	p.P1817P		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1899	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCACCACCTGGGGCTGCCCGT	0.657													38	153					0	0	0.004289	0	0
ATF6B	1388	broad.mit.edu	37	6	32083638	32083638	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:32083638G>A	uc003nzn.2	-	18	2023	c.1990C>T	c.(1990-1992)CCC>TCC	p.P664S	TNXB_uc010jts.1_Intron|ATF6B_uc003nzm.1_Intron|ATF6B_uc003nzo.2_Missense_Mutation_p.P661S	NM_004381	NP_004372	Q99941	ATF6B_HUMAN	activating transcription factor 6 beta isoform	664	Lumenal (Potential).				response to unfolded protein|signal transduction	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGGAGCGAGGGGGGCACTGTG	0.642													42	325					0	0	0.003610	0	0
PSMB8	5696	broad.mit.edu	37	6	32809442	32809442	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:32809442C>T	uc003oce.2	-	5	651	c.608G>A	c.(607-609)GGG>GAG	p.G203E	TAP2_uc011dqf.1_5'Flank|TAP2_uc003ocb.1_5'Flank|TAP2_uc003ocd.2_5'Flank|PSMB8_uc003ocf.2_Missense_Mutation_p.G199E	NM_148919	NP_683720	P28062	PSB8_HUMAN	proteasome beta 8 subunit isoform E2 proprotein	203					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|type I interferon-mediated signaling pathway|viral reproduction	cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			skin(1)	1						ATAAGTGTTCCCACTACCCGT	0.502													63	109					0	0	0.003610	0	0
SLC39A7	7922	broad.mit.edu	37	6	33169579	33169579	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:33169579C>T	uc003odf.2	+	3	586	c.469C>T	c.(469-471)CCC>TCC	p.P157S	RXRB_uc003odb.2_5'Flank|RXRB_uc003odc.2_5'Flank|RXRB_uc003odd.2_5'Flank|RXRB_uc011dqr.1_5'Flank|RXRB_uc011dqs.1_5'Flank|RXRB_uc011dqt.1_5'Flank|RXRB_uc011dqu.1_5'Flank|SLC39A7_uc003odg.2_Missense_Mutation_p.P157S|SLC39A7_uc011dqv.1_Missense_Mutation_p.P32S|SLC39A7_uc003odh.2_5'Flank|HSD17B8_uc003odi.1_5'Flank	NM_001077516	NP_001070984	Q92504	S39A7_HUMAN	solute carrier family 39, member 7	157	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane|membrane fraction	protein binding|zinc ion transmembrane transporter activity			large_intestine(1)	1						CTTCCTTATCCCCGTGGAGTC	0.547													36	39					0	0	0.002836	0	0
RPS18	6222	broad.mit.edu	37	6	33244018	33244018	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:33244018C>T	uc003odp.1	+	5	402	c.357C>T	c.(355-357)GCC>GCT	p.A119A	RPS18_uc010jum.1_RNA|RPS18_uc003odq.1_RNA|B3GALT4_uc003odr.2_5'Flank	NM_022551	NP_072045	P62269	RS18_HUMAN	ribosomal protein S18	119					endocrine pancreas development|ribosome biogenesis|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	rRNA binding|structural constituent of ribosome				0						AGATTCGGGCCCATAGAGGGC	0.562													31	22					0	0	0.002836	0	0
ANKS1A	23294	broad.mit.edu	37	6	34949512	34949512	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:34949512C>T	uc003ojx.3	+	4	623	c.481C>T	c.(481-483)CAC>TAC	p.H161Y	ANKS1A_uc011dss.1_Missense_Mutation_p.H161Y|ANKS1A_uc011dst.1_5'UTR|ANKS1A_uc010jvp.1_5'UTR|ANKS1A_uc010jvr.1_RNA	NM_015245	NP_056060	Q92625	ANS1A_HUMAN	ankyrin repeat and sterile alpha motif domain	161	ANK 3.					cytoplasm	protein binding			ovary(3)|upper_aerodigestive_tract(1)	4						GCAGTATGGCCACACAGAGGT	0.547													31	15					0	0	0.001786	0	0
SLC26A8	116369	broad.mit.edu	37	6	35960329	35960329	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:35960329C>T	uc003olm.2	-	6	861	c.750G>A	c.(748-750)GGG>GGA	p.G250G	SLC26A8_uc003oln.2_Silent_p.G250G|SLC26A8_uc003oll.2_Intron	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	250	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						TAATCATAATCCCAAAGATGA	0.468													45	39					0	0	0.003610	0	0
KCTD20	222658	broad.mit.edu	37	6	36449397	36449397	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:36449397C>T	uc003ome.2	+	6	1108	c.717C>T	c.(715-717)CTC>CTT	p.L239L	KCTD20_uc011dtm.1_Silent_p.L94L|KCTD20_uc011dtn.1_5'UTR|KCTD20_uc010jwk.2_Silent_p.L73L|KCTD20_uc011dto.1_5'UTR	NM_173562	NP_775833	Q7Z5Y7	KCD20_HUMAN	potassium channel tetramerisation domain	239						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)	2						ATCACTACCTCGAAGAGCTCA	0.478													44	39					0	0	0.003610	0	0
FGD2	221472	broad.mit.edu	37	6	36982748	36982748	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:36982748C>T	uc010jwp.1	+	8	1134	c.963C>T	c.(961-963)CTC>CTT	p.L321L	FGD2_uc003ong.2_Silent_p.L43L|FGD2_uc011dtv.1_5'UTR|FGD2_uc003oni.1_Silent_p.L127L	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	321	PH 1.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						ACACCCTGCTCCGTGAGGGCC	0.632													6	30					0	0	0.001984	0	0
PIM1	5292	broad.mit.edu	37	6	37140845	37140845	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:37140845C>T	uc003onk.2	+	5	1111	c.681C>T	c.(679-681)TCC>TCT	p.S227S	PIM1_uc011dtw.1_Missense_Mutation_p.P96L	NM_002648	NP_002639	P11309	PIM1_HUMAN	non-specific serine/threonine protein kinase	318	Protein kinase.				cell cycle|cell proliferation|multicellular organismal development|negative regulation of apoptosis|negative regulation of sequence-specific DNA binding transcription factor activity|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|protein autophosphorylation	cytoplasm|nucleus|plasma membrane	ATP binding|manganese ion binding|protein binding|protein binding|protein serine/threonine kinase activity|transcription factor binding			large_intestine(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(102;0.241)		Adenosine monophosphate(DB00131)	CAGTCTGGTCCCTGGGGATCC	0.542			T	BCL6	NHL								27	67					0	0	0.003954	0	0
RNF8	9025	broad.mit.edu	37	6	37342423	37342423	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:37342423C>T	uc003onq.3	+	5	1259	c.1066C>T	c.(1066-1068)CGC>TGC	p.R356C	RNF8_uc003onr.3_Missense_Mutation_p.R356C|RNF8_uc011dtx.1_Missense_Mutation_p.R288C	NM_003958	NP_003949	O76064	RNF8_HUMAN	ring finger protein 8 isoform 1	356					cell division|double-strand break repair|histone H2A ubiquitination|histone H2B ubiquitination|mitosis|positive regulation of DNA repair|response to ionizing radiation	midbody|nucleus|ubiquitin ligase complex	chromatin binding|histone binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1						AGAGCTAAATCGCAGCAAGAA	0.403													7	23					0	0	0.008291	0	0
DNAH8	1769	broad.mit.edu	37	6	38831663	38831663	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:38831663G>A	uc003ooe.1	+	43	6274	c.5674G>A	c.(5674-5676)GGT>AGT	p.G1892S		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						TGCACAGTCGGGTTCCTGGGG	0.363													57	33					0	0	0.003610	0	0
DNAH8	1769	broad.mit.edu	37	6	38906668	38906668	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:38906668G>A	uc003ooe.1	+	77	11860	c.11260G>A	c.(11260-11262)GAA>AAA	p.E3754K	DNAH8_uc003oog.1_Missense_Mutation_p.E203K|uc003oof.1_Intron	NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						AGGCCTATACGAAAACCACAA	0.373													13	37					0	0	0.001855	0	0
GLP1R	2740	broad.mit.edu	37	6	39034053	39034053	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:39034053C>T	uc003ooj.3	+	5	543	c.483C>T	c.(481-483)ATC>ATT	p.I161I	GLP1R_uc003ooh.2_RNA|GLP1R_uc003ooi.2_RNA	NM_002062	NP_002053	P43220	GLP1R_HUMAN	glucagon-like peptide 1 receptor precursor	161	Helical; Name=1; (Potential).				activation of adenylate cyclase activity|cAMP-mediated signaling|elevation of cytosolic calcium ion concentration|energy reserve metabolic process|regulation of insulin secretion	integral to membrane|plasma membrane	glucagon receptor activity|peptide receptor activity, G-protein coupled			lung(3)|breast(1)|pancreas(1)	5					Exenatide(DB01276)|Glucagon recombinant(DB00040)	CTCTGGTTATCGCCTCTGCGA	0.602													14	23					0	0	0.004007	0	0
KCNK5	8645	broad.mit.edu	37	6	39196866	39196866	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:39196866G>A	uc003oon.2	-	1	386	c.22C>T	c.(22-24)CTC>TTC	p.L8F		NM_003740	NP_003731	O95279	KCNK5_HUMAN	potassium channel, subfamily K, member 5	8	Helical; (Potential).				excretion	integral to plasma membrane	potassium channel activity|voltage-gated ion channel activity			central_nervous_system(1)|skin(1)	2						GCCGAGGTGAGCAGAGGGCCC	0.632													8	34					0	0	0.008291	0	0
KIAA0240	23506	broad.mit.edu	37	6	42797154	42797154	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:42797154G>A	uc003osn.1	+	6	1234	c.1083G>A	c.(1081-1083)GTG>GTA	p.V361V	KIAA0240_uc003osm.1_Silent_p.V361V|KIAA0240_uc011duw.1_Silent_p.V361V|KIAA0240_uc003oso.1_Silent_p.V361V|KIAA0240_uc003osp.1_Silent_p.V361V	NM_015349	NP_056164	Q6AI39	K0240_HUMAN	hypothetical protein LOC23506	361										ovary(1)	1	Colorectal(47;0.196)		Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|all cancers(41;0.00524)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|Kidney(15;0.0388)|OV - Ovarian serous cystadenocarcinoma(102;0.104)			ACATGTCTGTGAACATTGTAA	0.498													28	116					0	0	0.005443	0	0
CUL7	9820	broad.mit.edu	37	6	43014643	43014643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:43014643G>A	uc003otq.2	-	10	2675	c.2372C>T	c.(2371-2373)ACC>ATC	p.T791I	CUL7_uc010jyg.2_5'UTR|CUL7_uc011dvb.1_Missense_Mutation_p.T875I|CUL7_uc010jyh.2_Intron|KLC4_uc003otr.1_Intron	NM_014780	NP_055595	Q14999	CUL7_HUMAN	cullin 7	791					interspecies interaction between organisms|ubiquitin-dependent protein catabolic process|vasculogenesis	anaphase-promoting complex|mitochondrion	ubiquitin protein ligase binding			ovary(3)|kidney(1)	4			all cancers(41;0.00231)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|OV - Ovarian serous cystadenocarcinoma(102;0.0442)|KIRC - Kidney renal clear cell carcinoma(15;0.133)|Kidney(15;0.188)			CAGGATGTTGGTGATGAGTTT	0.572													26	38					0	0	0.003954	0	0
TTBK1	84630	broad.mit.edu	37	6	43251542	43251542	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:43251542G>A	uc003ouq.1	+	14	3343	c.3064G>A	c.(3064-3066)GAC>AAC	p.D1022N		NM_032538	NP_115927	Q5TCY1	TTBK1_HUMAN	tau tubulin kinase 1	1022						cell junction|cytoplasm|nucleus	ATP binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(2)|skin(2)|upper_aerodigestive_tract(1)	9			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0125)|OV - Ovarian serous cystadenocarcinoma(102;0.0399)			GGCCCTTGCAGACGGGCCAGC	0.677													6	39					0	0	0.001168	0	0
ABCC10	89845	broad.mit.edu	37	6	43410735	43410735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:43410735C>T	uc003ouy.1	+	10	2469	c.2254C>T	c.(2254-2256)CCT>TCT	p.P752S	ABCC10_uc003ouz.1_Missense_Mutation_p.P724S|ABCC10_uc010jyo.1_5'UTR	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	752	ABC transporter 1.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CCTCGATGACCCTCTGGCCGC	0.592													9	43					0	0	0.008291	0	0
POLH	5429	broad.mit.edu	37	6	43578327	43578327	+	Missense_Mutation	SNP	C	T	T	rs147564503		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:43578327C>T	uc003ovq.3	+	10	1415	c.1111C>T	c.(1111-1113)CGT>TGT	p.R371C	POLH_uc010jyu.2_Missense_Mutation_p.R247C|POLH_uc011dvl.1_RNA|POLH_uc003ovr.3_Missense_Mutation_p.R272C	NM_006502	NP_006493	Q9Y253	POLH_HUMAN	DNA-directed DNA polymerase eta	371					DNA replication|DNA synthesis involved in DNA repair|regulation of DNA repair|response to UV-C	cytoplasm|nucleoplasm	damaged DNA binding|DNA-directed DNA polymerase activity|metal ion binding			breast(2)	2	all_cancers(18;1.89e-05)|Lung NSC(15;0.00161)|all_lung(25;0.004)		all cancers(41;0.000753)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.0826)|OV - Ovarian serous cystadenocarcinoma(102;0.167)			TGTGAGCATTCGTGTACAAGG	0.502								DNA_polymerases_(catalytic_subunits)	Xeroderma_Pigmentosum				6	36					0	0	0.001984	0	0
CAPN11	11131	broad.mit.edu	37	6	44145010	44145010	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:44145010C>T	uc003owt.1	+	12	1307	c.1269C>T	c.(1267-1269)ATC>ATT	p.I423I	CAPN11_uc011dvn.1_Silent_p.I77I	NM_007058	NP_008989	Q9UMQ6	CAN11_HUMAN	calpain 11	423	Domain III.				proteolysis	acrosomal vesicle	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)|breast(1)	2	all_cancers(18;3.19e-06)|Lung NSC(15;0.00108)|all_lung(25;0.00278)|Hepatocellular(11;0.00908)|Ovarian(13;0.0273)		Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)			AGTTTAAGATCTCTCTTCCTG	0.607													9	6					0	0	0.004482	0	0
RCAN2	10231	broad.mit.edu	37	6	46190989	46190989	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:46190989G>A	uc003oyb.1	-	4	798	c.483C>T	c.(481-483)GTC>GTT	p.V161V	RCAN2_uc003oyc.1_Silent_p.V207V|RCAN2_uc003oyd.1_Silent_p.V207V	NM_005822	NP_005813	Q14206	RCAN2_HUMAN	Down syndrome critical region gene 1-like 1	161					calcium-mediated signaling|central nervous system development		nucleotide binding|protein phosphatase 2B binding				0						ACACGTGCACGACGACACTTG	0.522													39	114					0	0	0.002522	0	0
GPR116	221395	broad.mit.edu	37	6	46826784	46826784	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:46826784C>T	uc003oyo.3	-	17	3145	c.2856G>A	c.(2854-2856)ACG>ACA	p.T952T	GPR116_uc011dwj.1_Silent_p.T507T|GPR116_uc011dwk.1_Silent_p.T381T|GPR116_uc003oyp.3_Silent_p.T810T|GPR116_uc003oyq.3_Silent_p.T952T|GPR116_uc010jzi.1_Silent_p.T624T	NM_001098518	NP_001091988	Q8IZF2	GP116_HUMAN	G-protein coupled receptor 116 precursor	952	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(1)|skin(1)	2			Lung(136;0.192)			AGACACACTTCGTTTCGCCGC	0.483													29	25					0	0	0.008361	0	0
CD2AP	23607	broad.mit.edu	37	6	47576971	47576971	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:47576971C>T	uc003oyw.2	+	16	2201	c.1745C>T	c.(1744-1746)TCC>TTC	p.S582F		NM_012120	NP_036252	Q9Y5K6	CD2AP_HUMAN	CD2-associated protein	582	Potential.				cell division|mitosis|protein complex assembly|signal transduction|substrate-dependent cell migration, cell extension	cytoplasm|filamentous actin|nucleolus|plasma membrane|ruffle	SH3 domain binding|structural constituent of cytoskeleton			ovary(1)|skin(1)	2			Lung(136;0.105)|LUSC - Lung squamous cell carcinoma(51;0.138)			AAAAAAAATTCCCTGGATGAA	0.393													35	35					0	0	0.005524	0	0
GPR115	221393	broad.mit.edu	37	6	47682098	47682098	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:47682098G>A	uc003oza.1	+	6	1375	c.1117G>A	c.(1117-1119)GAA>AAA	p.E373K	GPR115_uc003oyz.1_Missense_Mutation_p.E430K|GPR115_uc003ozb.1_Missense_Mutation_p.E371K	NM_153838	NP_722580	Q8IZF3	GP115_HUMAN	G-protein coupled receptor 115 precursor	373	GPS.|Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)|skin(3)|upper_aerodigestive_tract(1)|breast(1)	8						TATCAGGAACGAAGTGAAATG	0.473													23	20					0	0	0.001882	0	0
PGK2	5232	broad.mit.edu	37	6	49754853	49754853	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:49754853C>T	uc003ozu.2	-	1	155	c.48G>A	c.(46-48)GGG>GGA	p.G16G		NM_138733	NP_620061	P07205	PGK2_HUMAN	phosphoglycerate kinase 2	16					glycolysis	cytosol	ATP binding|phosphoglycerate kinase activity			ovary(1)	1	Lung NSC(77;0.0402)					TGACTCGCTTCCCTCTAACAT	0.408													50	61					0	0	0.003610	0	0
MIR206	406989	broad.mit.edu	37	6	52009185	52009185	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:52009185G>A	hsa-mir-206|MI0000490	+			c.39G>A			uc003paj.1_RNA																	0						ATCCCCATATGGATTACTTTG	0.532													17	40					0	0	0.008871	0	0
TINAG	27283	broad.mit.edu	37	6	54173453	54173453	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:54173453C>T	uc003pcj.2	+	1	251	c.105C>T	c.(103-105)TTC>TTT	p.F35F	TINAG_uc003pci.2_Silent_p.F35F|TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	35					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			AGGCTTATTTCACTAGGAATC	0.393													39	37					0	0	0.005524	0	0
TINAG	27283	broad.mit.edu	37	6	54219385	54219385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:54219385G>A	uc003pcj.2	+	9	1347	c.1201G>A	c.(1201-1203)GAA>AAA	p.E401K	TINAG_uc010jzt.2_RNA	NM_014464	NP_055279	Q9UJW2	TINAG_HUMAN	tubulointerstitial nephritis antigen	401					cell adhesion|immune response|Malpighian tubule morphogenesis|proteolysis	basement membrane	cysteine-type endopeptidase activity|nucleotide binding|polysaccharide binding|scavenger receptor activity			ovary(3)|central_nervous_system(1)	4	Lung NSC(77;0.0518)		LUSC - Lung squamous cell carcinoma(124;0.246)			CACAAATAAAGAATCAGAAAA	0.323													29	26					0	0	0.008361	0	0
HCRTR2	3062	broad.mit.edu	37	6	55113587	55113588	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:55113587_55113588CC>TT	uc003pcl.2	+	2	689_690	c.374_375CC>TT	c.(373-375)TCC>TTT	p.S125F	HCRTR2_uc010jzv.2_RNA|HCRTR2_uc010jzw.1_Missense_Mutation_p.S60F	NM_001526	NP_001517	O43614	OX2R_HUMAN	orexin receptor 2	125	Extracellular (Potential).				feeding behavior	integral to plasma membrane	neuropeptide receptor activity			ovary(2)|lung(2)|upper_aerodigestive_tract(1)|breast(1)	6	Lung NSC(77;0.107)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			TTTGGACAGTCCCTTTGCAAAG	0.421													20	120					0	0	0.004672	0	0
GFRAL	389400	broad.mit.edu	37	6	55196546	55196546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:55196546C>T	uc003pcm.1	+	2	142	c.56C>T	c.(55-57)TCC>TTC	p.S19F		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	19	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			GAATACACTTCCCAAACCAAT	0.343													25	24					0	0	0.004656	0	0
GFRAL	389400	broad.mit.edu	37	6	55198660	55198660	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:55198660C>T	uc003pcm.1	+	3	320	c.234C>T	c.(232-234)TTC>TTT	p.F78F		NM_207410	NP_997293	Q6UXV0	GFRAL_HUMAN	GDNF family receptor alpha like precursor	78	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)|breast(1)	2	Lung NSC(77;0.0875)|Renal(3;0.122)		LUSC - Lung squamous cell carcinoma(124;0.23)			AAAGCAATTTCCAATTTAAAG	0.348													77	88					0	0	0.003610	0	0
COL21A1	81578	broad.mit.edu	37	6	55942371	55942371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:55942371C>T	uc003pcs.2	-	18	2045	c.1813G>A	c.(1813-1815)GGA>AGA	p.G605R	COL21A1_uc010jzz.2_5'UTR|COL21A1_uc011dxg.1_5'UTR|COL21A1_uc011dxh.1_5'UTR|COL21A1_uc003pcr.2_5'UTR	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	605	Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CCTGGGATTCCCTAAAAACAA	0.318													4	12					0	0	0.000602	0	0
COL21A1	81578	broad.mit.edu	37	6	56029246	56029246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:56029246C>T	uc003pcs.2	-	9	1578	c.1346G>A	c.(1345-1347)GGA>GAA	p.G449E	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.G449E|COL21A1_uc003pcu.1_Missense_Mutation_p.G446E	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	449	Collagen-like 1.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TCCTGGTTTTCCCGGAGGACA	0.423													3	5					0	0	0.000248	0	0
COL21A1	81578	broad.mit.edu	37	6	56044684	56044684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:56044684C>T	uc003pcs.2	-	3	564	c.332G>A	c.(331-333)GGA>GAA	p.G111E	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.G111E|COL21A1_uc003pcu.1_Missense_Mutation_p.G111E	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	111	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			TGTGTTTCCTCCTAAGTAGAG	0.463													11	27					0	0	0.001368	0	0
COL21A1	81578	broad.mit.edu	37	6	56044748	56044748	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:56044748G>A	uc003pcs.2	-	3	500	c.268C>T	c.(268-270)CCT>TCT	p.P90S	COL21A1_uc003pct.1_RNA|COL21A1_uc011dxi.1_Missense_Mutation_p.P90S|COL21A1_uc003pcu.1_Missense_Mutation_p.P90S	NM_030820	NP_110447	Q96P44	COLA1_HUMAN	collagen, type XXI, alpha 1 precursor	90	VWFA.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(2)	2	Lung NSC(77;0.0483)		LUSC - Lung squamous cell carcinoma(124;0.181)			CTTCCGAGAGGAATCTCCAGC	0.438													20	14					0	0	0.008871	0	0
COL9A1	1297	broad.mit.edu	37	6	70964882	70964882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:70964882G>A	uc003pfg.3	-	23	1741	c.1582C>T	c.(1582-1584)CCT>TCT	p.P528S	COL9A1_uc003pfe.3_Missense_Mutation_p.P101S|COL9A1_uc003pff.3_Missense_Mutation_p.P285S	NM_001851	NP_001842	P20849	CO9A1_HUMAN	alpha 1 type IX collagen isoform 1 precursor	528	Triple-helical region (COL2).				axon guidance|cell adhesion|organ morphogenesis	collagen type IX	metal ion binding			ovary(4)	4						GGGAGACCAGGAATTCCTCTA	0.433													29	112					0	0	0.002096	0	0
KHDC1L	100129128	broad.mit.edu	37	6	73935035	73935035	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:73935035C>T	uc003pgm.3	-	1	141	c.97G>A	c.(97-99)GAG>AAG	p.E33K	KHDC1_uc011dyl.1_RNA	NM_001126063	NP_001119535	Q5JSQ8	KHDCL_HUMAN	KH homology domain containing 1-like	33										skin(1)	1						ATGAGCTCCTCCTGGTCCTCT	0.438													5	11					0	0	0.000602	0	0
KHDC1	80759	broad.mit.edu	37	6	73951846	73951846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:73951846C>T	uc003pgo.2	-	4	947	c.446G>A	c.(445-447)AGG>AAG	p.R149K	KHDC1_uc011dyl.1_RNA|KHDC1_uc003pgn.3_Missense_Mutation_p.R76K	NM_030568	NP_085045	Q4VXA5	KHDC1_HUMAN	KH homology domain containing 1	149	KH; atypical.					integral to membrane	RNA binding			skin(1)	1						CTGCCTTGCCCTGTGTGGTCC	0.532													9	14					0	0	0.006214	0	0
COL12A1	1303	broad.mit.edu	37	6	75890910	75890910	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:75890910C>T	uc003phs.2	-	11	2075	c.1909G>A	c.(1909-1911)GAT>AAT	p.D637N	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Missense_Mutation_p.D295N	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	637	Fibronectin type-III 3.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AAACTAAGATCCTTTGGAGGG	0.318													11	49					0	0	0.000978	0	0
FILIP1	27145	broad.mit.edu	37	6	76022779	76022779	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:76022779C>T	uc003pia.2	-	5	3142	c.2769G>A	c.(2767-2769)GCG>GCA	p.A923A	FILIP1_uc003phy.1_Silent_p.A923A|FILIP1_uc003phz.2_Silent_p.A824A|FILIP1_uc010kbe.2_Silent_p.A926A|FILIP1_uc003pib.1_Silent_p.A675A	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	923										skin(3)|ovary(1)	4						TCTCCAAAGTCGCAGTGCTGT	0.473													35	58					0	0	0.006999	0	0
ZNF292	23036	broad.mit.edu	37	6	87970462	87970462	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:87970462A>G	uc003plm.3	+	8	7156	c.7115A>G	c.(7114-7116)AAT>AGT	p.N2372S		NM_015021	NP_055836	O60281	ZN292_HUMAN	zinc finger protein 292	2372					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)	4		all_cancers(76;3.82e-09)|Prostate(29;1.34e-10)|Acute lymphoblastic leukemia(125;2.17e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;5.31e-05)		BRCA - Breast invasive adenocarcinoma(108;0.0199)		AAGGCTAGAAATGATGCCCTG	0.338													11	38					0	0	0.008291	0	0
PNRC1	10957	broad.mit.edu	37	6	89790784	89790785	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:89790784_89790785CC>TT	uc003pmv.2	+	1	356_357	c.171_172CC>TT	c.(169-174)CTCCCT>CTTTCT	p.P58S	PNRC1_uc003pmu.2_Missense_Mutation_p.P58S|PNRC1_uc003pmx.2_5'Flank	NM_006813	NP_006804	Q12796	PNRC1_HUMAN	proline-rich nuclear receptor coactivator 1	58					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding				0		all_cancers(76;3.64e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.102)		CCCTCTTCCTCCCTCATTTCCT	0.703										Multiple Myeloma(7;0.094)			15	15					0	0	0.004672	0	0
MANEA	79694	broad.mit.edu	37	6	96053773	96053773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:96053773C>T	uc003poo.1	+	5	1021	c.881C>T	c.(880-882)CCT>CTT	p.P294L		NM_024641	NP_078917	Q5SRI9	MANEA_HUMAN	mannosidase, endo-alpha	294	Catalytic (Probable).|Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	Golgi membrane|integral to membrane	glycoprotein endo-alpha-1,2-mannosidase activity			ovary(2)|breast(1)	3		all_cancers(76;1.01e-06)|Acute lymphoblastic leukemia(125;3.58e-09)|all_hematologic(75;1.22e-06)|all_epithelial(107;0.00433)|Colorectal(196;0.0341)		BRCA - Breast invasive adenocarcinoma(108;0.148)		CGCAATTCTCCTTATGATGGA	0.368													15	46					0	0	0.003163	0	0
FUT9	10690	broad.mit.edu	37	6	96651444	96651444	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:96651444C>T	uc003pop.3	+	3	754	c.413C>T	c.(412-414)TCA>TTA	p.S138L		NM_006581	NP_006572	Q9Y231	FUT9_HUMAN	fucosyltransferase 9 (alpha (1,3)	138	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	alpha(1,3)-fucosyltransferase activity			skin(4)|ovary(1)	5		all_cancers(76;4.77e-07)|Acute lymphoblastic leukemia(125;4.01e-09)|all_hematologic(75;1.25e-06)|all_epithelial(107;0.00279)|Colorectal(196;0.0356)		BRCA - Breast invasive adenocarcinoma(108;0.08)		AATTTGGAATCACCAACTCAC	0.463													10	30					0	0	0.008291	0	0
FHL5	9457	broad.mit.edu	37	6	97053856	97053856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:97053856G>A	uc003pos.1	+	5	818	c.413G>A	c.(412-414)GGG>GAG	p.G138E	FHL5_uc003pot.1_Missense_Mutation_p.G138E	NM_020482	NP_065228	Q5TD97	FHL5_HUMAN	activator of cAMP-responsive element modulator	138	LIM zinc-binding 2.					nucleus	zinc ion binding			ovary(2)	2		all_cancers(76;1.57e-07)|Acute lymphoblastic leukemia(125;4.93e-10)|all_hematologic(75;3.55e-07)|all_epithelial(107;0.00266)|Colorectal(196;0.0341)|Lung NSC(302;0.204)		BRCA - Breast invasive adenocarcinoma(108;0.0948)		CAACCTATAGGGACAAAGCCT	0.413													9	25					0	0	0.004482	0	0
USP45	85015	broad.mit.edu	37	6	99894322	99894322	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:99894322G>A	uc003ppx.2	-	14	1859	c.1326C>T	c.(1324-1326)GAC>GAT	p.D442D	USP45_uc003ppv.2_Intron|USP45_uc003ppw.2_Silent_p.D122D	NM_001080481	NP_001073950	Q70EL2	UBP45_HUMAN	ubiquitin specific peptidase 45	442					ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|ubiquitin thiolesterase activity|zinc ion binding			ovary(1)|breast(1)	2		all_cancers(76;0.000208)|Acute lymphoblastic leukemia(125;8.41e-11)|all_hematologic(75;2.56e-07)|all_epithelial(107;0.122)|Colorectal(196;0.133)		BRCA - Breast invasive adenocarcinoma(108;0.0718)		TACATTTTCGGTCATGAATTA	0.323													26	20					0	0	0.003954	0	0
HACE1	57531	broad.mit.edu	37	6	105198315	105198315	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:105198315T>C	uc003pqu.1	-	20	2521	c.2244A>G	c.(2242-2244)CGA>CGG	p.R748R	HACE1_uc010kcy.1_Silent_p.R230R|HACE1_uc010kcz.1_Silent_p.R533R|HACE1_uc010kcx.1_Silent_p.R157R|HACE1_uc003pqt.1_Silent_p.R401R	NM_020771	NP_065822	Q8IYU2	HACE1_HUMAN	HECT domain and ankyrin repeat containing, E3	748	HECT.				protein ubiquitination involved in ubiquitin-dependent protein catabolic process	endoplasmic reticulum	ubiquitin-protein ligase activity			ovary(5)|lung(2)	7		all_cancers(87;6.89e-05)|Acute lymphoblastic leukemia(125;1.9e-08)|all_hematologic(75;9.25e-07)|all_epithelial(87;0.0216)|Colorectal(196;0.202)		BRCA - Breast invasive adenocarcinoma(108;0.122)|Epithelial(106;0.204)		CTCTTGTCATTCGAAGTTCAG	0.358													20	16					0	0	0.003954	0	0
AIM1	202	broad.mit.edu	37	6	107003731	107003731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:107003731C>T	uc003prh.2	+	15	4937	c.4450C>T	c.(4450-4452)CCG>TCG	p.P1484S	AIM1_uc003pri.2_Missense_Mutation_p.P288S	NM_001624	NP_001615	Q9Y4K1	AIM1_HUMAN	absent in melanoma 1	1484	Beta/gamma crystallin 'Greek key' 10.						sugar binding			breast(4)|ovary(2)|upper_aerodigestive_tract(1)|large_intestine(1)|skin(1)	9	Breast(9;0.0138)|all_epithelial(6;0.169)	all_cancers(87;4.67e-25)|all_epithelial(87;5.46e-21)|Acute lymphoblastic leukemia(125;2.15e-07)|all_hematologic(75;5.28e-06)|Colorectal(196;3.46e-05)|all_lung(197;5.94e-05)|Lung NSC(302;7.26e-05)|Ovarian(999;0.00473)	Epithelial(6;0.00114)|all cancers(7;0.00726)|BRCA - Breast invasive adenocarcinoma(8;0.0114)|OV - Ovarian serous cystadenocarcinoma(5;0.0305)	all cancers(137;1.73e-50)|Epithelial(106;2.42e-48)|OV - Ovarian serous cystadenocarcinoma(136;1.51e-27)|BRCA - Breast invasive adenocarcinoma(108;0.00104)|GBM - Glioblastoma multiforme(226;0.00858)		AATGGGATGCCCGCCTGGAGC	0.408													49	50					0	0	0.003610	0	0
QRSL1	55278	broad.mit.edu	37	6	107096972	107096972	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:107096972G>A	uc003prm.2	+	5	569	c.453G>A	c.(451-453)AAG>AAA	p.K151K	QRSL1_uc003prl.2_Silent_p.K151K	NM_018292	NP_060762	Q9H0R6	QRSL1_HUMAN	glutaminyl-tRNA synthase	151					translation		ATP binding|carbon-nitrogen ligase activity, with glutamine as amido-N-donor				0	Breast(9;0.0107)|all_epithelial(6;0.14)	all_cancers(87;0.00768)|Acute lymphoblastic leukemia(125;2.27e-07)|all_hematologic(75;1.38e-05)|all_epithelial(87;0.248)	Epithelial(6;0.000334)|all cancers(7;0.00157)|BRCA - Breast invasive adenocarcinoma(8;0.00721)|OV - Ovarian serous cystadenocarcinoma(5;0.0152)	BRCA - Breast invasive adenocarcinoma(108;0.118)|all cancers(137;0.167)|Epithelial(106;0.176)		ATAGAGAAAAGAGGAAGCAGA	0.463													17	19					0	0	0.004990	0	0
NR2E1	7101	broad.mit.edu	37	6	108502808	108502808	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:108502808C>T	uc003psg.2	+	8	1703	c.948C>T	c.(946-948)GCC>GCT	p.A316A		NM_003269	NP_003260	Q9Y466	NR2E1_HUMAN	nuclear receptor subfamily 2, group E, member 1	316	Ligand-binding (By similarity).				regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	sequence-specific DNA binding|steroid hormone receptor activity|zinc ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(87;8.13e-05)|Acute lymphoblastic leukemia(125;3.07e-08)|all_hematologic(75;3.33e-06)|all_epithelial(87;0.00866)|Colorectal(196;0.0637)		BRCA - Breast invasive adenocarcinoma(108;0.013)|Epithelial(106;0.0521)|all cancers(137;0.068)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)		CCATTGCAGCCCTTCAAGATG	0.448													33	43					0	0	0.002522	0	0
LACE1	246269	broad.mit.edu	37	6	108676932	108676932	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:108676932C>T	uc003psj.2	+	4	676	c.490C>T	c.(490-492)CAT>TAT	p.H164Y		NM_145315	NP_660358	Q8WV93	LACE1_HUMAN	lactation elevated 1	164							ATP binding			central_nervous_system(1)	1		all_cancers(87;1.5e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;6.79e-05)|Colorectal(196;0.0294)|all_lung(197;0.0486)|Lung SC(18;0.152)		BRCA - Breast invasive adenocarcinoma(108;0.00179)|Epithelial(106;0.0024)|all cancers(137;0.00379)|OV - Ovarian serous cystadenocarcinoma(136;0.0118)		GGTTCATTTTCATGGTTTCAT	0.313													10	31					0	0	0.008291	0	0
FIG4	9896	broad.mit.edu	37	6	110146339	110146339	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:110146339C>T	uc003ptt.2	+	23	2810	c.2595C>T	c.(2593-2595)CCC>CCT	p.P865P	FIG4_uc011eau.1_Silent_p.P559P	NM_014845	NP_055660	Q92562	FIG4_HUMAN	Sac domain-containing inositol phosphatase 3	865					cell death	endosome membrane	protein binding			ovary(1)	1		all_cancers(87;8.63e-07)|Acute lymphoblastic leukemia(125;2.66e-08)|all_hematologic(75;1.13e-06)|all_epithelial(87;0.000124)|all_lung(197;0.0187)|Colorectal(196;0.0492)|Lung SC(18;0.0548)		OV - Ovarian serous cystadenocarcinoma(136;0.0355)|Epithelial(106;0.038)|all cancers(137;0.0425)|BRCA - Breast invasive adenocarcinoma(108;0.079)		AAGTTCAGCCCCCAAGAGTAG	0.448													30	23					0	0	0.002096	0	0
RFPL4B	442247	broad.mit.edu	37	6	112671372	112671372	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:112671372G>A	uc003pvx.1	+	3	774	c.462G>A	c.(460-462)GAG>GAA	p.E154E		NM_001013734	NP_001013756	Q6ZWI9	RFPLB_HUMAN	ret finger protein-like 4B	154	B30.2/SPRY.						zinc ion binding				0		all_cancers(87;9.44e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00265)|Colorectal(196;0.0209)		all cancers(137;0.0202)|OV - Ovarian serous cystadenocarcinoma(136;0.0477)|Epithelial(106;0.0646)|GBM - Glioblastoma multiforme(226;0.0866)|BRCA - Breast invasive adenocarcinoma(108;0.244)		AAGTGGGAGAGGTGAAGTCAT	0.552													34	25					0	0	0.005524	0	0
RWDD1	51389	broad.mit.edu	37	6	116905895	116905895	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:116905895C>T	uc003pxd.2	+	3	308	c.145C>T	c.(145-147)CAG>TAG	p.Q49*	RWDD1_uc003pxb.2_5'UTR|RWDD1_uc003pxc.2_5'UTR	NM_015952	NP_057036	Q9H446	RWDD1_HUMAN	RWD domain containing 1 isoform a	49	RWD.						protein binding			ovary(2)|central_nervous_system(1)	3		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.0312)|OV - Ovarian serous cystadenocarcinoma(136;0.0689)|Epithelial(106;0.161)		CTTAGCTGTCCAGACTACCCT	0.358													18	27					0	0	0.007413	0	0
GPRC6A	222545	broad.mit.edu	37	6	117121776	117121776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:117121776C>T	uc003pxj.1	-	4	1541	c.1519G>A	c.(1519-1521)GAA>AAA	p.E507K	GPRC6A_uc003pxk.1_Missense_Mutation_p.E332K|GPRC6A_uc003pxl.1_Intron	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	507	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		TTTTTTGTTTCCTGATCTGGG	0.348													52	65					0	0	0.003610	0	0
GPRC6A	222545	broad.mit.edu	37	6	117150069	117150069	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:117150069G>A	uc003pxj.1	-	1	130	c.108C>T	c.(106-108)ATC>ATT	p.I36I	GPRC6A_uc003pxk.1_Silent_p.I36I|GPRC6A_uc003pxl.1_Silent_p.I36I	NM_148963	NP_683766	Q5T6X5	GPC6A_HUMAN	G protein-coupled receptor, family C, group 6,	36	Extracellular (Potential).				response to amino acid stimulus		G-protein coupled receptor activity			ovary(4)|skin(2)	6		all_cancers(87;0.0314)|all_epithelial(87;0.0216)|Colorectal(196;0.234)		GBM - Glioblastoma multiforme(226;0.0265)|all cancers(137;0.0554)|OV - Ovarian serous cystadenocarcinoma(136;0.07)		CTCCAATTATGATATGTCCCG	0.428													23	20					0	0	0.002780	0	0
VGLL2	245806	broad.mit.edu	37	6	117589584	117589584	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:117589584G>A	uc003pxn.2	+	2	511	c.321G>A	c.(319-321)CTG>CTA	p.L107L	VGLL2_uc003pxo.2_Silent_p.L107L	NM_182645	NP_872586	Q8N8G2	VGLL2_HUMAN	vestigial-like 2 isoform 1	107					transcription, DNA-dependent	nucleus				central_nervous_system(1)	1				GBM - Glioblastoma multiforme(226;0.0254)|all cancers(137;0.0676)|OV - Ovarian serous cystadenocarcinoma(136;0.0757)		GCAGGGCCCTGAGCCAACCCA	0.597													12	13					0	0	0.000978	0	0
ROS1	6098	broad.mit.edu	37	6	117686268	117686268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:117686268C>T	uc003pxp.1	-	20	3272	c.3073G>A	c.(3073-3075)GGA>AGA	p.G1025R	ROS1_uc011ebi.1_RNA|GOPC_uc003pxq.1_Intron	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	1025	Fibronectin type-III 4.|Extracellular (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		GGGCCCTTTCCCCAGTAGGTA	0.403			T	GOPC|ROS1	glioblastoma|NSCLC								22	32					0	0	0.002299	0	0
NKAIN2	154215	broad.mit.edu	37	6	125139535	125139535	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:125139535G>A	uc003pzo.2	+	6	815	c.538G>A	c.(538-540)GAT>AAT	p.D180N	NKAIN2_uc003pzp.2_Missense_Mutation_p.D179N|NKAIN2_uc010keq.2_Missense_Mutation_p.D113N|NKAIN2_uc010ker.2_Missense_Mutation_p.D90N	NM_001040214	NP_001035304	Q5VXU1	NKAI2_HUMAN	T-cell lymphoma breakpoint-associated target 1	180						integral to membrane|plasma membrane					0				GBM - Glioblastoma multiforme(226;0.104)		CTTTTCAGTTGATTTCATAGG	0.348													10	41					0	0	0.001368	0	0
RNF217	154214	broad.mit.edu	37	6	125397890	125397890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:125397890C>T	uc003pzs.2	+	6	831	c.493C>T	c.(493-495)CGC>TGC	p.R165C	RNF217_uc003pzr.2_Missense_Mutation_p.R222C|RNF217_uc003pzt.2_RNA	NM_152553	NP_689766	Q8TC41	RN217_HUMAN	ring finger protein 217	165					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	integral to membrane	ubiquitin-protein ligase activity|zinc ion binding				0			LUSC - Lung squamous cell carcinoma(4;0.0263)|Lung(4;0.0828)	GBM - Glioblastoma multiforme(226;0.0162)		TGAGAGATACCGCCAGCTCCG	0.443													44	48					0	0	0.003610	0	0
PTPRK	5796	broad.mit.edu	37	6	128306883	128306883	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:128306883G>A	uc003qbk.2	-	22	3598	c.3231C>T	c.(3229-3231)CCC>CCT	p.P1077P	PTPRK_uc003qbj.2_Silent_p.P1078P|PTPRK_uc010kfc.2_Silent_p.P1084P|PTPRK_uc011ebu.1_Silent_p.P1100P	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	1077	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		GTACAACGATGGGGCCAGCAC	0.478													15	39					0	0	0.004007	0	0
PTPRK	5796	broad.mit.edu	37	6	128403649	128403649	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:128403649G>A	uc003qbk.2	-	10	2077	c.1710C>T	c.(1708-1710)TTC>TTT	p.F570F	PTPRK_uc003qbj.2_Silent_p.F570F|PTPRK_uc010kfc.2_Silent_p.F570F|PTPRK_uc011ebu.1_Silent_p.F570F|PTPRK_uc003qbl.1_Silent_p.F440F|PTPRK_uc011ebv.1_Silent_p.F570F	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	570	Extracellular (Potential).|Fibronectin type-III 3.				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		TGGCTCTTATGAAAAACTGGT	0.448													39	45					0	0	0.008740	0	0
TMEM200A	114801	broad.mit.edu	37	6	130761718	130761718	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:130761718G>T	uc003qca.2	+	3	1022	c.151G>T	c.(151-153)GTT>TTT	p.V51F	TMEM200A_uc010kfh.2_Missense_Mutation_p.V51F|TMEM200A_uc010kfi.2_Missense_Mutation_p.V51F|TMEM200A_uc003qcb.2_Missense_Mutation_p.V51F	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	51	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TGTTGTGGTTGTTCGTGGCAA	0.502													24	67					1.10923e-09	1.56241e-09	0.002780	1	0
TAAR9	134860	broad.mit.edu	37	6	132859486	132859486	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:132859486G>A	uc011eci.1	+	1	60	c.58G>A	c.(58-60)GAA>AAA	p.E20K		NM_175057	NP_778227	Q96RI9	TAAR9_HUMAN	trace amine associated receptor 9	20	Extracellular (Potential).					plasma membrane	G-protein coupled receptor activity				0	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.0042)|GBM - Glioblastoma multiforme(226;0.00816)		GAACGTGAACGAATCCTGCAT	0.458													12	14					0	0	0.004007	0	0
TAAR8	83551	broad.mit.edu	37	6	132874774	132874774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:132874774C>T	uc011ecj.1	+	1	943	c.943C>T	c.(943-945)CCT>TCT	p.P315S		NM_053278	NP_444508	Q969N4	TAAR8_HUMAN	trace amine associated receptor 8	315	Cytoplasmic (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00412)|GBM - Glioblastoma multiforme(226;0.00792)		TCTATTTTATCCTTGGTTTAG	0.333													48	62					0	0	0.003610	0	0
TAAR5	9038	broad.mit.edu	37	6	132909851	132909851	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:132909851G>A	uc003qdk.2	-	1	1027	c.975C>T	c.(973-975)TTC>TTT	p.F325F		NM_003967	NP_003958	O14804	TAAR5_HUMAN	trace amine associated receptor 5	325	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane	G-protein coupled receptor activity			skin(1)	1	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.00604)|GBM - Glioblastoma multiforme(226;0.015)		TCTGCGGTGAGAAGACCTTCT	0.473													30	23					0	0	0.003755	0	0
EYA4	2070	broad.mit.edu	37	6	133789847	133789847	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:133789847C>T	uc003qec.3	+	11	1406	c.948C>T	c.(946-948)CTC>CTT	p.L316L	EYA4_uc011ecq.1_Silent_p.L262L|EYA4_uc011ecr.1_Silent_p.L262L|EYA4_uc003qed.3_Silent_p.L316L|EYA4_uc003qee.3_Silent_p.L293L|EYA4_uc011ecs.1_Silent_p.L316L|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a	316					anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		AGGAATCTCTCCCAGGACTGA	0.408													46	48					0	0	0.003610	0	0
BCLAF1	9774	broad.mit.edu	37	6	136599501	136599501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:136599501G>A	uc003qgx.1	-	4	771	c.518C>T	c.(517-519)CCC>CTC	p.P173L	BCLAF1_uc003qgw.1_Missense_Mutation_p.P173L|BCLAF1_uc003qgy.1_Missense_Mutation_p.P171L|BCLAF1_uc011edc.1_RNA|BCLAF1_uc011edd.1_RNA|BCLAF1_uc011ede.1_Missense_Mutation_p.P171L	NM_014739	NP_055554	Q9NYF8	BCLF1_HUMAN	BCL2-associated transcription factor 1 isoform	173					induction of apoptosis|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|protein binding			ovary(1)	1	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00226)|OV - Ovarian serous cystadenocarcinoma(155;0.00331)		CTCTTCTTGGGGTTCCCCTTC	0.403													45	144					0	0	0.003214	0	0
MAP7	9053	broad.mit.edu	37	6	136667165	136667165	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:136667165C>T	uc003qgz.2	-	17	2314	c.2068G>A	c.(2068-2070)GAA>AAA	p.E690K	MAP7_uc011edf.1_Missense_Mutation_p.E675K|MAP7_uc011edg.1_Missense_Mutation_p.E720K|MAP7_uc010kgu.2_Missense_Mutation_p.E712K|MAP7_uc011edh.1_Missense_Mutation_p.E675K|MAP7_uc010kgv.2_Missense_Mutation_p.E712K|MAP7_uc010kgs.2_Missense_Mutation_p.E544K|MAP7_uc011edi.1_Missense_Mutation_p.E544K|MAP7_uc010kgq.1_Missense_Mutation_p.E596K|MAP7_uc003qha.1_Missense_Mutation_p.E653K	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	690					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		TCAAAATTTTCATTCTGAACA	0.313													8	31					0	0	0.004482	0	0
KIAA1244	57221	broad.mit.edu	37	6	138634995	138634995	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:138634995T>C	uc003qhu.2	+	26	4264	c.4264T>C	c.(4264-4266)TTG>CTG	p.L1422L		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1422					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		ACTTGCCGGCTTGCCTCGAAG	0.403													6	33					0	0	0.001984	0	0
KIAA1244	57221	broad.mit.edu	37	6	138645205	138645205	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:138645205G>A	uc003qhu.2	+	31	4915	c.4915G>A	c.(4915-4917)GAA>AAA	p.E1639K		NM_020340	NP_065073	Q5TH69	BIG3_HUMAN	brefeldin A-inhibited guanine	1639					regulation of ARF protein signal transduction	cytoplasm|integral to membrane	ARF guanyl-nucleotide exchange factor activity			ovary(1)|skin(1)	2	Breast(32;0.135)			OV - Ovarian serous cystadenocarcinoma(155;0.00102)|GBM - Glioblastoma multiforme(68;0.00259)		CTTCAGCGGGGAAGGCTGCCA	0.672													18	32					0	0	0.001523	0	0
TXLNB	167838	broad.mit.edu	37	6	139609965	139609965	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:139609965T>C	uc011eds.1	-	2	237	c.72A>G	c.(70-72)TTA>TTG	p.L24L		NM_153235	NP_694967	Q8N3L3	TXLNB_HUMAN	taxilin beta	24						cytoplasm				large_intestine(1)|ovary(1)	2				OV - Ovarian serous cystadenocarcinoma(155;0.000185)|GBM - Glioblastoma multiforme(68;0.000235)		TGTGACTGGGTAATGATGAAC	0.512													35	39					0	0	0.003271	0	0
FBXO30	84085	broad.mit.edu	37	6	146121323	146121323	+	Silent	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:146121323G>T	uc003qla.2	-	3	2356	c.2157C>A	c.(2155-2157)ATC>ATA	p.I719I	uc003qky.1_Intron	NM_032145	NP_115521	Q8TB52	FBX30_HUMAN	F-box only protein 30	719							ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|large_intestine(1)	3		Ovarian(120;0.0776)		OV - Ovarian serous cystadenocarcinoma(155;1.95e-07)|GBM - Glioblastoma multiforme(68;0.0149)		ATGGCAAAGGGATTGCTTCCT	0.393													46	54					6.4308e-24	9.11619e-24	0.003610	1	0
SASH1	23328	broad.mit.edu	37	6	148792633	148792634	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:148792633_148792634TC>GT	uc003qme.1	+	6	983_984	c.508_509TC>GT	c.(508-510)TCA>GTA	p.S170V		NM_015278	NP_056093	O94885	SASH1_HUMAN	SAM and SH3 domain containing 1	170							protein binding			central_nervous_system(1)	1		Ovarian(120;0.0169)		OV - Ovarian serous cystadenocarcinoma(155;5.63e-11)|GBM - Glioblastoma multiforme(68;0.0701)		GAGACAGACTTCAAAAGGTACT	0.386													10	16					0	0	0.004672	0	0
TAB2	23118	broad.mit.edu	37	6	149699616	149699616	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:149699616C>T	uc003qmj.2	+	3	743	c.565C>T	c.(565-567)CGT>TGT	p.R189C	TAB2_uc011eec.1_Missense_Mutation_p.R157C|TAB2_uc010kia.1_Missense_Mutation_p.R189C|TAB2_uc010kib.1_Missense_Mutation_p.R189C|TAB2_uc003qmk.3_RNA	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	189					activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						CCAGACTGGTCGTAATACTCC	0.408													30	30					0	0	0.008361	0	0
C6orf72	116254	broad.mit.edu	37	6	149901049	149901049	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:149901049C>T	uc003qmq.1	+	5	536	c.509C>T	c.(508-510)CCT>CTT	p.P170L	C6orf72_uc010kie.1_Missense_Mutation_p.P50L	NM_138785	NP_620140	Q9NU53	CF072_HUMAN	hypothetical protein LOC116254 precursor	170	Extracellular (Potential).					integral to membrane					0		Ovarian(120;0.0907)		OV - Ovarian serous cystadenocarcinoma(155;9.66e-12)|GBM - Glioblastoma multiforme(68;0.171)		TATACCCTCCCTTTGGAAGAA	0.348													50	48					0	0	0.003610	0	0
C6orf97	80129	broad.mit.edu	37	6	151859312	151859312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:151859312G>A	uc003qol.2	+	3	408	c.319G>A	c.(319-321)GAA>AAA	p.E107K		NM_025059	NP_079335	Q8IYT3	CF097_HUMAN	hypothetical protein LOC80129	107	Potential.										0		Ovarian(120;0.126)	BRCA - Breast invasive adenocarcinoma(37;0.111)	OV - Ovarian serous cystadenocarcinoma(155;1.48e-10)		CAGAGTTCAGGAACTAGAAGA	0.408													27	19					0	0	0.005443	0	0
SYNE1	23345	broad.mit.edu	37	6	152647157	152647157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:152647157G>A	uc010kiw.2	-	80	15976	c.15374C>T	c.(15373-15375)TCT>TTT	p.S5125F	SYNE1_uc003qot.3_Missense_Mutation_p.S5054F|SYNE1_uc003qou.3_Missense_Mutation_p.S5125F|SYNE1_uc010kiz.2_Missense_Mutation_p.S880F	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	5125	Spectrin 16.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		AGAAAACTCAGACAATTTCTT	0.368										HNSCC(10;0.0054)			21	35					0	0	0.001523	0	0
SYNE1	23345	broad.mit.edu	37	6	152823773	152823773	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:152823773C>T	uc010kiw.2	-	10	1485	c.883G>A	c.(883-885)GAT>AAT	p.D295N	SYNE1_uc003qot.3_Missense_Mutation_p.D302N|SYNE1_uc003qou.3_Missense_Mutation_p.D295N|SYNE1_uc010kjb.1_Missense_Mutation_p.D295N|SYNE1_uc003qpa.1_Missense_Mutation_p.D295N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	295	Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		CCTACATCATCCTCTTGCCCA	0.368										HNSCC(10;0.0054)			16	25					0	0	0.007413	0	0
ARID1B	57492	broad.mit.edu	37	6	157528639	157528639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:157528639C>T	uc003qqn.2	+	20	6462	c.6310C>T	c.(6310-6312)CGC>TGC	p.R2104C	ARID1B_uc003qqo.2_Missense_Mutation_p.R2064C|ARID1B_uc003qqp.2_Missense_Mutation_p.R2051C	NM_017519	NP_059989	Q8NFD5	ARI1B_HUMAN	AT rich interactive domain 1B (SWI1-like)	2109					chromatin-mediated maintenance of transcription|nervous system development|transcription, DNA-dependent	SWI/SNF complex	DNA binding|protein binding|transcription coactivator activity			ovary(1)|breast(1)	2		Breast(66;0.000162)|Ovarian(120;0.0265)		OV - Ovarian serous cystadenocarcinoma(65;3.19e-17)|BRCA - Breast invasive adenocarcinoma(81;1.01e-05)		CGTTGGGGATCGCAAAAACCC	0.488													82	121					0	0	0.003610	0	0
ZDHHC14	79683	broad.mit.edu	37	6	157963677	157963677	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:157963677C>T	uc003qqt.2	+	2	803	c.306C>T	c.(304-306)TTC>TTT	p.F102F	ZDHHC14_uc003qqs.2_Silent_p.F102F|ZDHHC14_uc010kjm.1_5'UTR	NM_024630	NP_078906	Q8IZN3	ZDH14_HUMAN	zinc finger, DHHC-type containing 14 isoform 1	102	Helical; (Potential).					integral to membrane	acyltransferase activity|zinc ion binding			ovary(1)|skin(1)	2		Breast(66;0.00586)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;2.9e-17)|BRCA - Breast invasive adenocarcinoma(81;5.8e-05)		GCATCCTGTTCTTCTTTGTGA	0.602													16	47					0	0	0.008871	0	0
PNLDC1	154197	broad.mit.edu	37	6	160229840	160229840	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:160229840G>A	uc003qsx.1	+	8	769	c.598G>A	c.(598-600)GAT>AAT	p.D200N	PNLDC1_uc003qsy.1_Missense_Mutation_p.D211N	NM_173516	NP_775787	Q8NA58	PNDC1_HUMAN	poly(A)-specific ribonuclease (PARN)-like domain	200	Cytoplasmic (Potential).					integral to membrane|nucleus	nucleic acid binding				0		Breast(66;0.00519)|Ovarian(120;0.123)		OV - Ovarian serous cystadenocarcinoma(65;1.55e-18)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		GGTGCTGAAAGATGAGGGGGT	0.547													8	6					0	0	0.004482	0	0
MAS1	4142	broad.mit.edu	37	6	160328698	160328698	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:160328698C>T	uc003qsz.2	+	1	725	c.711C>T	c.(709-711)TTC>TTT	p.F237F		NM_002377	NP_002368	P04201	MAS_HUMAN	MAS1 oncogene	237	Helical; Name=6; (Potential).				anatomical structure morphogenesis|cell proliferation|protein kinase C signaling cascade	integral to plasma membrane	angiotensin type II receptor activity			ovary(2)|lung(2)	4		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.44e-18)|BRCA - Breast invasive adenocarcinoma(81;5.6e-06)		TCATTATATTCCTCATCTTCG	0.478													20	21					0	0	0.001523	0	0
PARK2	5071	broad.mit.edu	37	6	161969965	161969965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:161969965G>A	uc003qtx.3	-	9	1138	c.1004C>T	c.(1003-1005)CCT>CTT	p.P335L	PARK2_uc003qtv.3_Intron|PARK2_uc010kkd.2_Missense_Mutation_p.P144L|PARK2_uc003qtw.3_Missense_Mutation_p.P144L|PARK2_uc003qty.3_Missense_Mutation_p.P307L|PARK2_uc003qtz.3_Missense_Mutation_p.P186L|PARK2_uc010kke.1_Missense_Mutation_p.P354L|PARK2_uc011egf.1_Missense_Mutation_p.P9L	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	335	IBR-type.				aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		TCCACAGCCAGGGCGGGGGCA	0.612													8	39					0	0	0.004482	0	0
SMOC2	64094	broad.mit.edu	37	6	168927051	168927051	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:168927051G>A	uc003qws.1	+	3	302	c.282G>A	c.(280-282)AGG>AGA	p.R94R	SMOC2_uc003qwr.1_Silent_p.R94R	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	94	Thyroglobulin type-1 1.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		TGGCCGAAAGGAAGTATACCC	0.507													14	18					0	0	0.006122	0	0
C6orf70	55780	broad.mit.edu	37	6	170155474	170155474	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:170155474G>T	uc003qxg.1	+	3	304	c.271G>T	c.(271-273)GAA>TAA	p.E91*	C6orf70_uc011ehb.1_5'UTR|C6orf70_uc003qxh.1_Nonsense_Mutation_p.E91*|C6orf70_uc010kky.1_5'UTR	NM_018341	NP_060811	Q5T6L9	CF070_HUMAN	hypothetical protein LOC55780	91						integral to membrane				ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.208)		OV - Ovarian serous cystadenocarcinoma(33;1.2e-22)|BRCA - Breast invasive adenocarcinoma(81;1.49e-07)|GBM - Glioblastoma multiforme(31;0.00191)		GGGGCAATTTGAAATTCGATA	0.463													14	53					0.000308642	0.000431792	0.003163	1	0
FAM120B	84498	broad.mit.edu	37	6	170628184	170628184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:170628184C>T	uc003qxp.2	+	2	1814	c.1706C>T	c.(1705-1707)ACC>ATC	p.T569I	FAM120B_uc003qxo.1_Missense_Mutation_p.T569I|FAM120B_uc011ehd.1_Intron	NM_032448	NP_115824	Q96EK7	F120B_HUMAN	family with sequence similarity 120B	569					cell differentiation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			ovary(1)	1		Breast(66;0.000338)|Esophageal squamous(34;0.241)		OV - Ovarian serous cystadenocarcinoma(33;3.94e-22)|BRCA - Breast invasive adenocarcinoma(81;6.47e-06)|GBM - Glioblastoma multiforme(31;0.0899)		CAACAAGTAACCATGGTTTCA	0.388													21	42					0	0	0.002780	0	0
MICALL2	79778	broad.mit.edu	37	7	1484476	1484476	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:1484476G>A	uc003skj.3	-	6	1377	c.1230C>T	c.(1228-1230)GCC>GCT	p.A410A	MICALL2_uc003ski.3_5'Flank	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	410						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		GGGTCCTGGAGGCGGACGGGG	0.632													4	5					0	0	0.000248	0	0
LFNG	3955	broad.mit.edu	37	7	2565153	2565154	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:2565153_2565154CC>TT	uc003smf.2	+	4	704_705	c.687_688CC>TT	c.(685-690)AGCCTG>AGTTTG	p.229_230SL>SL	LFNG_uc003smg.2_Silent_p.229_230SL>SL	NM_001040167	NP_001035257	Q8NES3	LFNG_HUMAN	lunatic fringe isoform a	229_230	Lumenal (Potential).				organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		GCAAGCCCAGCCTGGACAGGCC	0.688													5	7					0	0	0.004672	0	0
CARD11	84433	broad.mit.edu	37	7	2985573	2985573	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:2985573G>A	uc003smv.2	-	4	642	c.238C>T	c.(238-240)CTA>TTA	p.L80L		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	80	CARD.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		TTGGTATGTAGAATGTCCAAC	0.493			Mis		DLBCL								70	76					0	0	0.003610	0	0
SDK1	221935	broad.mit.edu	37	7	4153801	4153801	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:4153801G>A	uc003smx.2	+	25	3857	c.3718G>A	c.(3718-3720)GAG>AAG	p.E1240K	SDK1_uc010kso.2_Missense_Mutation_p.E516K	NM_152744	NP_689957	Q7Z5N4	SDK1_HUMAN	sidekick 1 precursor	1240	Fibronectin type-III 6.				cell adhesion	integral to membrane				large_intestine(3)|ovary(2)|skin(1)	6		all_cancers(1;0.127)|Ovarian(82;0.0177)|Myeloproliferative disorder(862;0.194)		UCEC - Uterine corpus endometrioid carcinoma (126;0.121)|OV - Ovarian serous cystadenocarcinoma(56;9.65e-15)		ATTCACCATCGAGGAGCTGGA	0.637													18	15					0	0	0.001882	0	0
FOXK1	221937	broad.mit.edu	37	7	4794116	4794116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:4794116C>T	uc003snc.1	+	3	783	c.773C>T	c.(772-774)CCA>CTA	p.P258L	FOXK1_uc003sna.1_Missense_Mutation_p.P95L|FOXK1_uc003snb.1_Missense_Mutation_p.P258L	NM_001037165	NP_001032242	P85037	FOXK1_HUMAN	forkhead box K1	258					cell differentiation|embryo development|muscle organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|magnesium ion binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			upper_aerodigestive_tract(1)|skin(1)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;7.43e-15)		CCAGCCAGTCCACGCGGTGCC	0.627													12	18					0	0	0.001855	0	0
WIPI2	26100	broad.mit.edu	37	7	5254224	5254224	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:5254224C>T	uc003snv.2	+	4	486	c.270C>T	c.(268-270)ATC>ATT	p.I90I	WIPI2_uc003snw.2_Silent_p.I90I|WIPI2_uc003snx.2_Silent_p.I72I|WIPI2_uc003sny.2_Silent_p.I72I|WIPI2_uc010ksv.2_5'UTR|WIPI2_uc003snz.2_Silent_p.I31I|WIPI2_uc003soa.2_Silent_p.I31I	NM_015610	NP_056425	Q9Y4P8	WIPI2_HUMAN	WD repeat domain, phosphoinositide interacting 2	90					autophagic vacuole assembly	cytosol|PAS complex|pre-autophagosomal structure membrane	phosphatidylinositol-3,5-bisphosphate binding|phosphatidylinositol-3-phosphate binding			ovary(2)	2		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0925)|OV - Ovarian serous cystadenocarcinoma(56;2.59e-14)		TAGTGGCCATCGTCAGCCTTA	0.473													19	58					0	0	0.008871	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066980	18066980	+	Silent	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:18066980T>C	uc003stz.2	-	1	507	c.426A>G	c.(424-426)GTA>GTG	p.V142V		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	142					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					ACAAGTTGTCTACTGGGATAT	0.453													49	40					0	0	0.003610	0	0
DNAH11	8701	broad.mit.edu	37	7	21598584	21598584	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:21598584G>A	uc003svc.2	+	3	691	c.660G>A	c.(658-660)AAG>AAA	p.K220K		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	220	Stem (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TTGCAGGAAAGATGGATCTGG	0.308									Kartagener_syndrome				7	5					0	0	0.006214	0	0
SKAP2	8935	broad.mit.edu	37	7	26893780	26893780	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:26893780A>G	uc003syc.2	-	3	468	c.175T>C	c.(175-177)TAT>CAT	p.Y59H	SKAP2_uc011jzi.1_5'UTR|SKAP2_uc011jzj.1_Missense_Mutation_p.Y44H	NM_003930	NP_003921	O75563	SKAP2_HUMAN	src kinase associated phosphoprotein 2	59					B cell activation|cell junction assembly|protein complex assembly|signal transduction	cytosol|plasma membrane	SH3/SH2 adaptor activity			pancreas(1)	1						TCCTGAAGATAGCTACAAAAC	0.259													14	34					0	0	0.007413	0	0
HOXA2	3199	broad.mit.edu	37	7	27140891	27140891	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:27140891C>T	uc003syh.2	-	2	860	c.585G>A	c.(583-585)AGG>AGA	p.R195R		NM_006735	NP_006726	O43364	HXA2_HUMAN	homeobox A2	195	Homeobox.					nucleus	sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2						TGTGCTTCATCCTCCGGTTCT	0.493													11	37					0	0	0.000978	0	0
HOXA3	3200	broad.mit.edu	37	7	27150227	27150227	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:27150227C>T	uc011jzl.1	-	2	233	c.33G>A	c.(31-33)GCG>GCA	p.A11A	HOXA3_uc011jzk.1_Intron|HOXA3_uc003syk.2_Silent_p.A11A	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	11					angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						CACCGTAGATCGCCGAGCTGT	0.602													40	37					0	0	0.003610	0	0
HOXA6	3203	broad.mit.edu	37	7	27187097	27187097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:27187097G>A	uc003syo.1	-	1	272	c.272C>T	c.(271-273)TCG>TTG	p.S91L	uc003syp.1_Intron|HOXA6_uc003syq.1_Intron	NM_024014	NP_076919	P31267	HXA6_HUMAN	homeobox A6	91						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						GCCACTGCCCGAGGGCGAGGC	0.622													19	16					0	0	0.008871	0	0
CPVL	54504	broad.mit.edu	37	7	29160545	29160545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:29160545G>A	uc003szv.2	-	2	252	c.133C>T	c.(133-135)CTC>TTC	p.L45F	CPVL_uc003szw.2_Missense_Mutation_p.L45F|CPVL_uc003szx.2_Missense_Mutation_p.L45F	NM_031311	NP_112601	Q9H3G5	CPVL_HUMAN	serine carboxypeptidase vitellogenic-like	45					proteolysis		protein binding|serine-type carboxypeptidase activity			ovary(2)	2						TAAGGGGTGAGAAATAATGGC	0.428													34	34					0	0	0.007835	0	0
PDE1C	5137	broad.mit.edu	37	7	31890269	31890269	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:31890269G>A	uc003tcm.1	-	8	1306	c.837C>T	c.(835-837)TTC>TTT	p.F279F	PDE1C_uc003tcn.1_Silent_p.F279F|PDE1C_uc003tco.1_Silent_p.F339F|PDE1C_uc003tcr.2_Silent_p.F279F|PDE1C_uc003tcs.2_Silent_p.F279F	NM_005020	NP_005011	Q14123	PDE1C_HUMAN	phosphodiesterase 1C	279	Catalytic (By similarity).				activation of phospholipase C activity|nerve growth factor receptor signaling pathway	cytosol	calmodulin binding|calmodulin-dependent cyclic-nucleotide phosphodiesterase activity|metal ion binding			skin(3)|central_nervous_system(1)	4			GBM - Glioblastoma multiforme(11;0.216)			TCTGAATGTGGAAATTGTTGG	0.448													42	47					0	0	0.003610	0	0
AOAH	313	broad.mit.edu	37	7	36662820	36662820	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:36662820A>C	uc003tfh.3	-	7	959	c.558T>G	c.(556-558)GAT>GAG	p.D186E	AOAH_uc010kxf.2_Missense_Mutation_p.D186E|AOAH_uc011kba.1_Missense_Mutation_p.D154E	NM_001637	NP_001628	P28039	AOAH_HUMAN	acyloxyacyl hydrolase precursor	186					inflammatory response|lipid metabolic process	extracellular region	acyloxyacyl hydrolase activity|lipoprotein lipase activity			skin(1)	1						ATTTGTCTGAATCCACATCTT	0.358													14	20					0	0	0.006122	0	0
ELMO1	9844	broad.mit.edu	37	7	37382279	37382279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:37382279C>T	uc003tfk.1	-	2	323	c.16G>A	c.(16-18)GAC>AAC	p.D6N	ELMO1_uc010kxg.1_Missense_Mutation_p.D6N	NM_014800	NP_055615	Q92556	ELMO1_HUMAN	engulfment and cell motility 1 isoform 1	6					actin cytoskeleton organization|apoptosis|cellular component movement|phagocytosis, engulfment|Rac protein signal transduction|regulation of defense response to virus by virus|viral reproduction	cytoskeleton|cytosol|plasma membrane	SH3 domain binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)	6						TTGACGATGTCCGCGGGTGGC	0.498													32	98					0	0	0.002096	0	0
GPR141	353345	broad.mit.edu	37	7	37780062	37780062	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:37780062C>T	uc003tfm.1	+	1	67	c.67C>T	c.(67-69)CTC>TTC	p.L23F	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	23	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						CTTAATCAGCCTCTACTTCAT	0.502													53	65					0	0	0.003610	0	0
HECW1	23072	broad.mit.edu	37	7	43351432	43351432	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:43351432G>C	uc003tid.1	+	4	703	c.98G>C	c.(97-99)CGC>CCC	p.R33P	HECW1_uc011kbi.1_Missense_Mutation_p.R33P|HECW1_uc003tie.1_Missense_Mutation_p.R65P	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	33					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						CAGAGCCGACGCCGGTGCAAG	0.607													11	45					0	0	0.008291	0	0
HECW1	23072	broad.mit.edu	37	7	43484077	43484077	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:43484077G>T	uc003tid.1	+	11	1911	c.1306G>T	c.(1306-1308)GAA>TAA	p.E436*	HECW1_uc011kbi.1_Nonsense_Mutation_p.E436*	NM_015052	NP_055867	Q76N89	HECW1_HUMAN	NEDD4-like ubiquitin-protein ligase 1	436					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	ubiquitin-protein ligase activity			ovary(8)|lung(6)|breast(4)|skin(4)|pancreas(1)	23						TGTGGGACCTGAAGGGGCTGG	0.622													6	5					0.00198382	0.00276662	0.001984	1	0
POLD2	5425	broad.mit.edu	37	7	44157611	44157611	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:44157611G>C	uc010kxz.2	-	4	923	c.273C>G	c.(271-273)TGC>TGG	p.C91W	POLD2_uc003tke.3_Missense_Mutation_p.C91W|POLD2_uc010kya.2_Missense_Mutation_p.C91W|POLD2_uc003tkf.3_Missense_Mutation_p.C91W	NM_006230	NP_006221	P49005	DPOD2_HUMAN	DNA-directed DNA polymerase delta 2	91					base-excision repair|DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	DNA binding|DNA-directed DNA polymerase activity|protein binding			ovary(2)	2						CCACCACACAGCACTTCTCCT	0.637													14	27					0	0	0.002450	0	0
NPC1L1	29881	broad.mit.edu	37	7	44573051	44573051	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:44573051G>A	uc003tlb.2	-	8	2444	c.2388C>T	c.(2386-2388)TCC>TCT	p.S796S	NPC1L1_uc003tlc.2_Silent_p.S796S|NPC1L1_uc011kbw.1_Silent_p.S796S|NPC1L1_uc003tld.2_3'UTR	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	796	Helical; Name=7; (Potential).|SSD.				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	TGCTGTCCAGGGAGAGCAGGG	0.627													10	22					0	0	0.008291	0	0
ZMIZ2	83637	broad.mit.edu	37	7	44796724	44796724	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:44796724C>T	uc003tlr.2	+	4	467	c.344C>T	c.(343-345)CCT>CTT	p.P115L	ZMIZ2_uc003tlq.2_Missense_Mutation_p.P83L|ZMIZ2_uc003tls.2_Missense_Mutation_p.P115L|ZMIZ2_uc003tlt.2_5'Flank|ZMIZ2_uc010kyj.2_5'Flank	NM_031449	NP_113637	Q8NF64	ZMIZ2_HUMAN	zinc finger, MIZ-type containing 2 isoform 1	115	Gly-rich.				positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear replication fork	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|zinc ion binding			ovary(2)|large_intestine(2)|breast(1)	5						GGGGGCTACCCTGGGGCCCCC	0.642													8	5					0	0	0.003080	0	0
PURB	5814	broad.mit.edu	37	7	44924288	44924288	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:44924288C>T	uc003tme.2	-	1	673	c.660G>A	c.(658-660)CCG>CCA	p.P220P		NM_033224	NP_150093	Q96QR8	PURB_HUMAN	purine-rich element binding protein B	220	Gly-rich.|By similarity.				regulation of myeloid cell differentiation	DNA replication factor A complex	mRNA binding|single-stranded DNA binding|transcription factor binding				0						AGGTGCCCTCCGGGAGCTCTC	0.473													18	34					0	0	0.008871	0	0
MYO1G	64005	broad.mit.edu	37	7	45007284	45007284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:45007284C>T	uc003tmh.2	-	14	1846	c.1702G>A	c.(1702-1704)GAG>AAG	p.E568K	MYO1G_uc003tmf.2_Missense_Mutation_p.E11K|MYO1G_uc003tmg.2_Missense_Mutation_p.E330K|MYO1G_uc010kym.2_Missense_Mutation_p.E453K|MYO1G_uc003tmi.1_Missense_Mutation_p.E480K	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	568	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						TTGGTCACCTCTGTGATGTCC	0.637													11	17					0	0	0.000978	0	0
ADCY1	107	broad.mit.edu	37	7	45650040	45650040	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:45650040G>A	uc003tne.3	+	3	870	c.852G>A	c.(850-852)CTG>CTA	p.L284L	ADCY1_uc003tnd.2_Silent_p.L59L	NM_021116	NP_066939	Q08828	ADCY1_HUMAN	adenylate cyclase 1	284	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|calmodulin binding|metal ion binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6					Adenosine(DB00640)|Adenosine monophosphate(DB00131)|Adenosine triphosphate(DB00171)	AGGACTTCCTGAAGCCCCCTG	0.602													34	40					0	0	0.005524	0	0
POM121L12	285877	broad.mit.edu	37	7	53103958	53103958	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:53103958C>T	uc003tpz.2	+	1	610	c.594C>T	c.(592-594)TTC>TTT	p.F198F		NM_182595	NP_872401	Q8N7R1	P1L12_HUMAN	POM121 membrane glycoprotein-like 12	198											0						CGTTGTGGTTCGAGGTCTCAG	0.637													23	24					0	0	0.006320	0	0
LOC442308	442308	broad.mit.edu	37	7	55714573	55714573	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:55714573G>A	uc010kzj.2	+	1		c.1262G>A				NR_003598				Homo sapiens similar to tubulin, beta 5 (LOC442308), non-coding RNA.												0						CATCTCTGAGGATCAGCAGTA	0.537													11	8					0	0	0.008291	0	0
LOC643955	643955	broad.mit.edu	37	7	62758648	62758648	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:62758648G>A	uc011kdj.1	-	2	230	c.162C>T	c.(160-162)TCC>TCT	p.S54S		NR_003952				Homo sapiens cDNA clone IMAGE:30377995, containing frame-shift errors.												0						CCTCACCCAGGGAGACCAAGT	0.353													26	39					0	0	0.002836	0	0
ZNF679	168417	broad.mit.edu	37	7	63720599	63720599	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:63720599G>A	uc003tsx.2	+	3	309	c.40G>A	c.(40-42)GGA>AGA	p.G14R		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	14					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						TGTTTTTCAGGGACTGTTGAC	0.383													12	33					0	0	0.000978	0	0
TPST1	8460	broad.mit.edu	37	7	65706081	65706081	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:65706081T>A	uc003tuw.2	+	2	1021	c.669T>A	c.(667-669)TAT>TAA	p.Y223*	TPST1_uc010kzy.2_Intron|TPST1_uc010kzz.2_Nonsense_Mutation_p.Y223*|TPST1_uc010laa.2_Nonsense_Mutation_p.Y223*	NM_003596	NP_003587	O60507	TPST1_HUMAN	tyrosylprotein sulfotransferase 1	223	Lumenal (Potential).				inflammatory response|peptidyl-tyrosine sulfation	Golgi membrane|integral to membrane|membrane fraction	protein-tyrosine sulfotransferase activity				0						AGACCATGTATAACCAGTGTA	0.383													16	22					0	0	0.003163	0	0
WBSCR17	64409	broad.mit.edu	37	7	71036309	71036309	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:71036309G>A	uc003tvy.2	+	6	1002	c.1002G>A	c.(1000-1002)AGG>AGA	p.R334R	WBSCR17_uc003tvz.2_Silent_p.R33R	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	334	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				TGGTCAACAGGAAGTTCTTCG	0.502													37	55					0	0	0.004878	0	0
CALN1	83698	broad.mit.edu	37	7	71488734	71488734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:71488734C>T	uc003twa.3	-	4	810	c.283G>A	c.(283-285)GAT>AAT	p.D95N	CALN1_uc003twb.3_Missense_Mutation_p.D137N|CALN1_uc003twc.3_Missense_Mutation_p.D95N	NM_001017440	NP_001017440	Q9BXU9	CABP8_HUMAN	calneuron 1 isoform 2	95	2 (Potential).|EF-hand 2.|Cytoplasmic (Potential).					Golgi apparatus|integral to membrane|perinuclear region of cytoplasm|plasma membrane	calcium ion binding			skin(1)	1		all_cancers(73;0.069)|Lung NSC(55;0.0658)|all_lung(88;0.0912)|all_epithelial(88;0.161)				ATGAATTCATCAAAATCCACC	0.458													35	45					0	0	0.004878	0	0
FKBP6	8468	broad.mit.edu	37	7	72743404	72743404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:72743404G>A	uc003tya.2	+	3	349	c.217G>A	c.(217-219)GAT>AAT	p.D73N	FKBP6_uc003twz.2_Intron|FKBP6_uc011kew.1_Missense_Mutation_p.D68N|FKBP6_uc010lbe.1_RNA|TRIM50_uc003txy.1_5'Flank|TRIM50_uc003txz.1_5'Flank	NM_003602	NP_003593	O75344	FKBP6_HUMAN	FK506 binding protein 6 isoform a	73	PPIase FKBP-type.				protein folding	membrane	FK506 binding|peptidyl-prolyl cis-trans isomerase activity				0		Lung NSC(55;0.0908)|all_lung(88;0.198)				CAGACCCTTCGATTCTAATTA	0.433													65	66					0	0	0.003610	0	0
MLXIPL	51085	broad.mit.edu	37	7	73010570	73010570	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:73010570C>T	uc003tyn.1	-	13	2019	c.1971G>A	c.(1969-1971)GCG>GCA	p.A657A	MLXIPL_uc003tyj.1_Silent_p.A36A|MLXIPL_uc003tyk.1_Silent_p.A655A|MLXIPL_uc003tyl.1_Silent_p.A655A|MLXIPL_uc003tym.1_Silent_p.A657A|MLXIPL_uc003tyo.1_RNA|MLXIPL_uc003typ.1_Silent_p.A563A	NM_032951	NP_116569	Q9NP71	WBS14_HUMAN	Williams Beuren syndrome chromosome region 14	657	Basic motif.				anatomical structure morphogenesis|energy reserve metabolic process|glucose mediated signaling pathway|intracellular protein kinase cascade|negative regulation of cell cycle arrest|negative regulation of oxidative phosphorylation|negative regulation of peptidyl-serine phosphorylation|positive regulation of cell proliferation|positive regulation of fatty acid biosynthetic process|positive regulation of glycolysis|positive regulation of transcription from RNA polymerase II promoter|triglyceride homeostasis	cytosol|transcription factor complex	carbohydrate response element binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|transcription factor binding			pancreas(1)	1		Lung NSC(55;0.0659)|all_lung(88;0.152)				GCTTCTGCTCCGCGGAGATGT	0.632													8	36					0	0	0.008291	0	0
GTF2IRD1	9569	broad.mit.edu	37	7	73922530	73922530	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:73922530C>T	uc003uaq.2	+	2	513	c.120C>T	c.(118-120)TCC>TCT	p.S40S	GTF2IRD1_uc010lbq.2_Silent_p.S40S|GTF2IRD1_uc003uap.2_Silent_p.S40S|GTF2IRD1_uc003uar.1_Silent_p.S40S	NM_016328	NP_057412	Q9UHL9	GT2D1_HUMAN	GTF2I repeat domain containing 1 isoform 1	40						nucleus	DNA binding|protein binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(4)	4						CCTTAGACTCCATGGTGAGTG	0.612													26	24					0	0	0.002096	0	0
SPDYE5	442590	broad.mit.edu	37	7	75130754	75130754	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:75130754G>A	uc011kfy.1	+	5	840	c.704G>A	c.(703-705)GGG>GAG	p.G235E		NM_001099435	NP_001092905	A6NIY4	SPDE5_HUMAN	speedy homolog E5	235											0						TTCCTGTATGGGAAGAACCGC	0.552													33	109					0	0	0.003610	0	0
PCLO	27445	broad.mit.edu	37	7	82578946	82578946	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:82578946G>A	uc003uhx.2	-	6	11247	c.10958C>T	c.(10957-10959)CCA>CTA	p.P3653L	PCLO_uc003uhv.2_Missense_Mutation_p.P3653L|PCLO_uc010lec.2_Missense_Mutation_p.P618L	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3584					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TACTTTCTGTGGACTTATATC	0.473													73	76					0	0	0.003610	0	0
GRM3	2913	broad.mit.edu	37	7	86415737	86415737	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:86415737G>A	uc003uid.2	+	3	1728	c.629G>A	c.(628-630)TGG>TAG	p.W210*	GRM3_uc010lef.2_Nonsense_Mutation_p.W208*|GRM3_uc010leg.2_Nonsense_Mutation_p.W82*|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	210	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	TTCTTCAACTGGACCTACGTG	0.572													26	28					0	0	0.007291	0	0
GRM3	2913	broad.mit.edu	37	7	86416163	86416163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:86416163G>A	uc003uid.2	+	3	2154	c.1055G>A	c.(1054-1056)CGG>CAG	p.R352Q	GRM3_uc010lef.2_Missense_Mutation_p.R350Q|GRM3_uc010leg.2_Missense_Mutation_p.R224Q|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	352	Extracellular (Potential).				synaptic transmission	integral to plasma membrane		p.R352Q(1)		lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CCCTGGTTCCGGGACTTCTGG	0.612													7	21					0	0	0.001984	0	0
GRM3	2913	broad.mit.edu	37	7	86469000	86469000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:86469000G>A	uc003uid.2	+	4	3269	c.2170G>A	c.(2170-2172)GAA>AAA	p.E724K	GRM3_uc010lef.2_Intron|GRM3_uc010leg.2_Missense_Mutation_p.E596K|GRM3_uc010leh.2_Missense_Mutation_p.E316K	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	724	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AGAGAAGCGGGAAACAGTCAT	0.498													29	26					0	0	0.007291	0	0
ABCB4	5244	broad.mit.edu	37	7	87069662	87069662	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:87069662G>A	uc003uiv.1	-	13	1489	c.1413C>T	c.(1411-1413)ATC>ATT	p.I471I	ABCB4_uc003uiw.1_Silent_p.I471I|ABCB4_uc003uix.1_Silent_p.I471I	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	471	ABC transporter 1.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					CCACACCAATGATTTCCCTCA	0.353													10	43					0	0	0.006214	0	0
ABCB4	5244	broad.mit.edu	37	7	87082419	87082419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:87082419C>T	uc003uiv.1	-	6	453	c.377G>A	c.(376-378)GGA>GAA	p.G126E	ABCB4_uc003uiw.1_Missense_Mutation_p.G126E|ABCB4_uc003uix.1_Missense_Mutation_p.G126E|ABCB4_uc003uiy.2_Missense_Mutation_p.G126E	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	126	Helical; (By similarity).|ABC transmembrane type-1 1.				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					AACAAGAACTCCAGCACCCAA	0.323													26	40					0	0	0.008361	0	0
DBF4	10926	broad.mit.edu	37	7	87537442	87537442	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:87537442C>T	uc003ujf.1	+	12	2493	c.1989C>T	c.(1987-1989)TTC>TTT	p.F663F	DBF4_uc003ujh.1_Silent_p.F403F|DBF4_uc003ujg.1_Silent_p.F439F|DBF4_uc011khf.1_Silent_p.F430F	NM_006716	NP_006707	Q9UBU7	DBF4A_HUMAN	activator of S phase kinase	663					cell cycle checkpoint|DNA replication|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle	nucleoplasm	enzyme activator activity|nucleic acid binding|protein binding|zinc ion binding			lung(2)	2	Esophageal squamous(14;0.00202)	Breast(660;0.0334)				CAGCGTTTTTCTCGTCCCCTT	0.299													13	31					0	0	0.002450	0	0
CDK14	5218	broad.mit.edu	37	7	90492554	90492554	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:90492554G>A	uc003uky.2	+	6	831	c.609G>A	c.(607-609)AAG>AAA	p.K203K	CDK14_uc003ukz.1_Silent_p.K185K|CDK14_uc010les.1_Silent_p.K157K|CDK14_uc011khl.1_Silent_p.K74K	NM_012395	NP_036527	O94921	CDK14_HUMAN	PFTAIRE protein kinase 1	203	Protein kinase.				cell division|G2/M transition of mitotic cell cycle|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	cytoplasmic cyclin-dependent protein kinase holoenzyme complex|nucleus|plasma membrane	ATP binding|cyclin binding|cyclin-dependent protein kinase activity			lung(3)|ovary(1)	4						TCCATACCAAGGAGACGCTGA	0.303													37	47					0	0	0.002222	0	0
KRIT1	889	broad.mit.edu	37	7	91852253	91852253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:91852253G>A	uc003ulq.1	-	11	1465	c.1294C>T	c.(1294-1296)CGT>TGT	p.R432C	KRIT1_uc010lev.1_Missense_Mutation_p.R189C|KRIT1_uc003ulr.1_Missense_Mutation_p.R432C|KRIT1_uc003uls.1_Missense_Mutation_p.R432C|KRIT1_uc003ult.1_Missense_Mutation_p.R384C|KRIT1_uc003ulu.1_Missense_Mutation_p.R432C|KRIT1_uc003ulv.1_Missense_Mutation_p.R432C	NM_194456	NP_919438	O00522	KRIT1_HUMAN	krev interaction trapped 1 isoform 1	432	FERM.				angiogenesis|cell redox homeostasis|negative regulation of angiogenesis|negative regulation of endothelial cell apoptosis|negative regulation of endothelial cell migration|negative regulation of endothelial cell proliferation|regulation of establishment of cell polarity|small GTPase mediated signal transduction	cell-cell junction|cytoskeleton	protein binding|small GTPase regulator activity			ovary(2)|lung(1)	3	all_cancers(62;1.04e-09)|all_epithelial(64;5.75e-09)|Breast(17;0.00206)|all_lung(186;0.0509)|Lung NSC(181;0.0692)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			TCAACAGAACGATATGACCCA	0.338									Familial_Cerebral_Cavernous_Angioma				18	21					0	0	0.002299	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94540473	94540473	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:94540473A>G	uc003unp.2	+	2	1330	c.1048A>G	c.(1048-1050)AAT>GAT	p.N350D	PPP1R9A_uc010lfj.2_Missense_Mutation_p.N350D|PPP1R9A_uc011kif.1_Missense_Mutation_p.N350D|PPP1R9A_uc003unq.2_Missense_Mutation_p.N350D|PPP1R9A_uc011kig.1_Missense_Mutation_p.N350D	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	350						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			TGCTGAAGCTAATTTGGTTGG	0.458										HNSCC(28;0.073)			20	30					0	0	0.008871	0	0
TRRAP	8295	broad.mit.edu	37	7	98563401	98563401	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:98563401C>T	uc003upp.2	+	48	7247	c.7038C>T	c.(7036-7038)TTC>TTT	p.F2346F	TRRAP_uc011kis.1_Silent_p.F2328F|TRRAP_uc003upr.2_Silent_p.F2045F	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2346	Interaction with TP53.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGAAGAACTTCATCCAGGCCA	0.527													18	26					0	0	0.007413	0	0
TRRAP	8295	broad.mit.edu	37	7	98606073	98606073	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:98606073G>A	uc003upp.2	+	69	10994	c.10785G>A	c.(10783-10785)GAG>GAA	p.E3595E	TRRAP_uc011kis.1_Silent_p.E3566E|TRRAP_uc003upr.2_Silent_p.E3301E	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	3595	PI3K/PI4K.				histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			CCCTTGTGGAGATCTACAAGC	0.612													35	51					0	0	0.003755	0	0
CYP3A43	64816	broad.mit.edu	37	7	99436751	99436751	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:99436751G>A	uc003urx.1	+	3	277	c.174G>A	c.(172-174)TGG>TGA	p.W58*	CYP3A43_uc003ury.1_Nonsense_Mutation_p.W58*|CYP3A43_uc003urz.1_Nonsense_Mutation_p.W58*|CYP3A43_uc003usa.1_RNA|CYP3A43_uc010lgi.1_Missense_Mutation_p.G99E|CYP3A43_uc003usb.1_5'UTR	NM_057095	NP_476436	Q9HB55	CP343_HUMAN	cytochrome P450, family 3, subfamily A,	58			YGTHSHKLFKKLGIPGPTPLPFLGTILFYLRGLWNFDRECN EKYGEMWGLYEGQQPMLVIMDPD -> LGPIHINFLRSWEF LGQPLCLFWELFCSTLGVFGILTENVMKNTEKCGGCMRGNS PCWSSWIPT (in allele CYP3A43*2).		xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding			ovary(1)|skin(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)				Cetirizine(DB00341)|Doxycycline(DB00254)	AGGGTCTTTGGAATTTTGACA	0.358													29	34					0	0	0.002096	0	0
STAG3	10734	broad.mit.edu	37	7	99802320	99802321	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:99802320_99802321GG>AA	uc003utx.1	+	27	3028_3029	c.2873_2874GG>AA	c.(2872-2874)AGG>AAA	p.R958K	STAG3_uc011kjk.1_Missense_Mutation_p.R900K|GATS_uc003uty.3_Intron|GATS_uc003utz.3_Intron|GATS_uc003uua.3_Intron|GATS_uc010lgt.2_Intron|STAG3_uc003uub.1_Missense_Mutation_p.R182K	NM_012447	NP_036579	Q9UJ98	STAG3_HUMAN	stromal antigen 3	958					chromosome segregation|synaptonemal complex assembly	chromosome, centromeric region|meiotic cohesin complex|synaptonemal complex	binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ATCGAGATGAGGGACCTGGCCC	0.564													17	16					0	0	0.004672	0	0
LRCH4	4034	broad.mit.edu	37	7	100180065	100180065	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100180065A>C	uc003uvj.2	-	2	291	c.238T>G	c.(238-240)TTT>GTT	p.F80V	LRCH4_uc010lgz.2_RNA|LRCH4_uc003uvi.2_RNA|LRCH4_uc011kjx.1_RNA	NM_002319	NP_002310	O75427	LRCH4_HUMAN	leucine-rich repeats and calponin homology (CH)	80	LRR 2.				nervous system development	PML body	protein binding			large_intestine(1)|ovary(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					ACCTCGGGAAACCGGTTCCGG	0.657													8	13					0	0	0.004482	0	0
TFR2	7036	broad.mit.edu	37	7	100225227	100225227	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100225227G>A	uc003uvv.1	-	15	1781	c.1740C>T	c.(1738-1740)GTC>GTT	p.V580V	TFR2_uc010lhc.1_Silent_p.V121V|TFR2_uc003uvu.1_Silent_p.V409V	NM_003227	NP_003218	Q9UP52	TFR2_HUMAN	transferrin receptor 2	580	Extracellular (Potential).				cellular iron ion homeostasis|iron ion transport|proteolysis	cytoplasm|integral to plasma membrane	peptidase activity|transferrin receptor activity			ovary(1)|pancreas(1)	2	Lung NSC(181;0.0261)|all_lung(186;0.0392)|Esophageal squamous(72;0.0439)					CGACGGCAGGGACTCCCACAA	0.642													7	13					0	0	0.001984	0	0
SLC12A9	56996	broad.mit.edu	37	7	100458768	100458769	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100458768_100458769CC>TT	uc003uwp.2	+	10	1369_1370	c.1227_1228CC>TT	c.(1225-1230)CTCCTG>CTTTTG	p.409_410LL>LL	SLC12A9_uc003uwq.2_Silent_p.320_321LL>LL|SLC12A9_uc011kki.1_5'UTR|SLC12A9_uc003uwr.2_Silent_p.145_146LL>LL|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_Silent_p.145_146LL>LL|SLC12A9_uc003uwv.2_5'UTR	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	409_410	Helical; (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					AGCTGGTGCTCCTGGCTGGGAA	0.599													32	31					0	0	0.004672	0	0
MUC17	140453	broad.mit.edu	37	7	100682048	100682048	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100682048C>T	uc003uxp.1	+	3	7404	c.7351C>T	c.(7351-7353)CCT>TCT	p.P2451S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2451	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|39.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACCTCACCTCCTAGTGAAGG	0.532													96	275					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100682585	100682585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100682585G>A	uc003uxp.1	+	3	7941	c.7888G>A	c.(7888-7890)GAA>AAA	p.E2630K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2630	Extracellular (Potential).|59 X approximate tandem repeats.|42.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AACTCCTAGTGAAGTAAGTAC	0.458													149	170					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100683924	100683924	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100683924C>T	uc003uxp.1	+	3	9280	c.9227C>T	c.(9226-9228)CCT>CTT	p.P3076L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3076	Extracellular (Potential).|Ser-rich.|50.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCCAACAGTCCTGTGGTCACT	0.478													146	160					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100684576	100684576	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100684576G>A	uc003uxp.1	+	3	9932	c.9879G>A	c.(9877-9879)GTG>GTA	p.V3293V	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3293	Extracellular (Potential).|Ser-rich.|53.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCACAACGGTGGCCAGTTCTG	0.512													167	191					0	0	0.003610	0	0
MUC17	140453	broad.mit.edu	37	7	100686845	100686845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:100686845G>A	uc003uxp.1	+	3	12201	c.12148G>A	c.(12148-12150)GAA>AAA	p.E4050K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	4050	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					CCCTTCATCAGAATCCAGCAG	0.532													44	48					0	0	0.002222	0	0
LRRC17	10234	broad.mit.edu	37	7	102584759	102584759	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:102584759T>G	uc003vau.2	+	4	1420	c.1031T>G	c.(1030-1032)CTC>CGC	p.L344R	FBXL13_uc010liq.1_Intron|FBXL13_uc003vaq.2_Intron|FBXL13_uc010lir.1_Intron|FBXL13_uc003var.2_Intron|FBXL13_uc003vas.2_Intron|LRRC17_uc003vat.2_3'UTR	NM_001031692	NP_001026862	Q8N6Y2	LRC17_HUMAN	leucine rich repeat containing 17 isoform 1	344					bone marrow development|negative regulation of osteoclast differentiation|ossification	extracellular space				ovary(1)	1						TTTTTGAAACTCTTGTGGCTC	0.373													44	64					0	0	0.002522	0	0
HBP1	26959	broad.mit.edu	37	7	106836326	106836326	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:106836326G>A	uc003vdy.2	+	9	1301	c.1115G>A	c.(1114-1116)AGT>AAT	p.S372N	HBP1_uc011klv.1_Missense_Mutation_p.S382N|HBP1_uc003vdz.2_Missense_Mutation_p.S372N|HBP1_uc003vea.2_Missense_Mutation_p.S372N|HBP1_uc003veb.1_Missense_Mutation_p.S372N	NM_012257	NP_036389	O60381	HBP1_HUMAN	HMG-box transcription factor 1	372					cell cycle arrest|regulation of transcription, DNA-dependent|transcription, DNA-dependent|Wnt receptor signaling pathway	nucleus	DNA binding			skin(1)	1						GTGTTAAGTAGTATGGCTCGC	0.368													32	42					0	0	0.003610	0	0
COG5	10466	broad.mit.edu	37	7	106964934	106964934	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:106964934C>T	uc003ved.2	-	11	1677	c.1152G>A	c.(1150-1152)TGG>TGA	p.W384*	COG5_uc003vec.2_Nonsense_Mutation_p.W384*|COG5_uc003vee.2_Nonsense_Mutation_p.W384*	NM_181733	NP_859422	Q9UP83	COG5_HUMAN	component of oligomeric golgi complex 5 isoform	384					intra-Golgi vesicle-mediated transport|protein transport	cytosol|Golgi membrane|Golgi transport complex|nucleus	protein binding			central_nervous_system(2)|skin(2)	4						TAACTGAATTCCAAAATGTGT	0.254													47	45					0	0	0.003610	0	0
DOCK4	9732	broad.mit.edu	37	7	111430618	111430618	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:111430618G>A	uc003vfx.2	-	31	3479	c.3210C>T	c.(3208-3210)TTC>TTT	p.F1070F	DOCK4_uc011kmm.1_5'Flank|DOCK4_uc003vfw.2_Silent_p.F511F|DOCK4_uc003vfy.2_Silent_p.F1106F	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	1070					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				TCACTTCTAGGAAGGGGCCAA	0.403													11	23					0	0	0.001368	0	0
PPP1R3A	5506	broad.mit.edu	37	7	113518560	113518560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:113518560C>T	uc010ljy.1	-	4	2618	c.2587G>A	c.(2587-2589)GAT>AAT	p.D863N		NM_002711	NP_002702	Q16821	PPR3A_HUMAN	protein phosphatase 1, regulatory (inhibitor)	863					glycogen metabolic process	integral to membrane				lung(9)|ovary(9)|pancreas(7)|skin(6)|breast(2)|prostate(1)	34						AACTGTAAATCCAGTTTTGAA	0.378													24	77					0	0	0.002780	0	0
CAV1	857	broad.mit.edu	37	7	116199329	116199329	+	Silent	SNP	G	A	A	rs142699467		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:116199329G>A	uc003vif.1	+	3	803	c.525G>A	c.(523-525)CAG>CAA	p.Q175Q	CAV1_uc010lkd.1_Silent_p.Q144Q|CAV1_uc010lke.1_Silent_p.Q144Q|CAV1_uc003vig.1_RNA|CAV1_uc003vih.2_Silent_p.Q144Q|CAV1_uc010lkf.1_Silent_p.Q144Q	NM_001753	NP_001744	Q03135	CAV1_HUMAN	caveolin 1	175	Cytoplasmic (Potential).				blood coagulation|calcium ion transport|caveola assembly|cellular response to starvation|cholesterol homeostasis|cytosolic calcium ion homeostasis|inactivation of MAPK activity|interspecies interaction between organisms|leukocyte migration|lipid storage|maintenance of protein location in cell|mammary gland involution|membrane depolarization|negative regulation of BMP signaling pathway|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of endothelial cell proliferation|negative regulation of epithelial cell differentiation|negative regulation of nitric oxide biosynthetic process|negative regulation of peptidyl-serine phosphorylation|negative regulation of protein binding|negative regulation of transcription from RNA polymerase II promoter|nitric oxide homeostasis|nitric oxide metabolic process|positive regulation of calcium ion transport into cytosol|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of metalloenzyme activity|positive regulation of peptidyl-serine phosphorylation|positive regulation of vasoconstriction|protein homooligomerization|receptor internalization|regulation of blood coagulation|regulation of fatty acid metabolic process|regulation of nitric-oxide synthase activity|regulation of smooth muscle contraction|response to calcium ion|response to estrogen stimulus|response to hypoxia|response to progesterone stimulus|skeletal muscle tissue development|T cell costimulation|triglyceride metabolic process|vasculogenesis|vesicle organization	apical plasma membrane|basolateral plasma membrane|caveola|caveola|cytosol|endoplasmic reticulum|endosome|Golgi membrane|lipid particle|perinuclear region of cytoplasm	cholesterol binding|nitric-oxide synthase binding|peptidase activator activity|protein binding|protein complex scaffold|receptor binding				0	all_epithelial(6;1.42e-06)|Lung NSC(10;0.0056)|all_lung(10;0.00609)		STAD - Stomach adenocarcinoma(10;0.00878)			TCAACTTGCAGAAAGAAATAT	0.393													15	19					0	0	0.004990	0	0
CFTR	1080	broad.mit.edu	37	7	117174389	117174390	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:117174389_117174390CC>TT	uc003vjd.2	+	5	681_682	c.549_550CC>TT	c.(547-552)CTCCTT>CTTTTT	p.L184F	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	184	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	TTGTTAGTCTCCTTTCCAACAA	0.307									Cystic_Fibrosis				17	26					0	0	0.004672	0	0
CTTNBP2	83992	broad.mit.edu	37	7	117450995	117450996	+	Silent	DNP	GA	AG	AG			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:117450995_117450996GA>AG	uc003vjf.2	-	3	329_330	c.237_238TC>CT	c.(235-240)AATCTA>AACTTA	p.79_80NL>NL		NM_033427	NP_219499	Q8WZ74	CTTB2_HUMAN	cortactin binding protein 2	79_80										ovary(4)|central_nervous_system(1)	5	Lung NSC(10;0.0018)|all_lung(10;0.002)			LUSC - Lung squamous cell carcinoma(290;0.133)		GGGTCATTTAGATTAAATCTCC	0.431													30	45					0	0	0.004672	0	0
KCND2	3751	broad.mit.edu	37	7	120381675	120381675	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:120381675C>T	uc003vjj.1	+	3	2331	c.1366C>T	c.(1366-1368)CAG>TAG	p.Q456*		NM_012281	NP_036413	Q9NZV8	KCND2_HUMAN	potassium voltage-gated channel, Shal-related	456	Cytoplasmic (Potential).				regulation of action potential|synaptic transmission	cell surface|dendritic spine	metal ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5	all_neural(327;0.117)					ACTCAGTAATCAGCTGCAGGT	0.363													21	18					0	0	0.001523	0	0
CADPS2	93664	broad.mit.edu	37	7	122377021	122377021	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:122377021C>T	uc010lkp.2	-	2	604	c.441G>A	c.(439-441)CGG>CGA	p.R147R	CADPS2_uc010lkq.2_Silent_p.R147R	NM_017954	NP_060424	Q86UW7	CAPS2_HUMAN	Ca2+-dependent activator protein for secretion 2	147					exocytosis|protein transport	cell junction|cytoplasmic vesicle membrane|synapse	lipid binding|metal ion binding			ovary(1)|central_nervous_system(1)	2						CATAATAACTCCGAACTGCGT	0.373													15	19					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	7	124116669	124116669	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:124116669T>C	uc011kod.1	+	1	245	c.245T>C	c.(244-246)TTA>TCA	p.L82S		NM_001085395	NP_001078864			RecName: Full=Putative RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like protein 2;          Short=CTD phosphatase SSU72-like protein 2;          EC=3.1.3.16;																		AATGGAATCTTACACATCTTG	0.418													48	54					0	0	0.003610	0	0
GRM8	2918	broad.mit.edu	37	7	126882983	126882983	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:126882983G>A	uc003vlr.2	-	1	587	c.276C>T	c.(274-276)CTC>CTT	p.L92L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.L92L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	92	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TGTTGGAAAGGAGATCAGGGT	0.502										HNSCC(24;0.065)			18	10					0	0	0.001523	0	0
ZNF800	168850	broad.mit.edu	37	7	127014581	127014581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:127014581G>A	uc003vlx.1	-	5	1072	c.809C>T	c.(808-810)CCA>CTA	p.P270L	ZNF800_uc003vlw.1_Missense_Mutation_p.P173L|ZNF800_uc003vly.1_Missense_Mutation_p.P270L|ZNF800_uc010lla.2_Missense_Mutation_p.P270L	NM_176814	NP_789784	Q2TB10	ZN800_HUMAN	zinc finger protein 800	270					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GGATTGGTTTGGATTCTTTCG	0.363													44	76					0	0	0.003610	0	0
FLNC	2318	broad.mit.edu	37	7	128481303	128481303	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:128481303G>A	uc003vnz.3	+	12	2102	c.1893G>A	c.(1891-1893)TGG>TGA	p.W631*	FLNC_uc003voa.3_Nonsense_Mutation_p.W631*	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	631	Filamin 4.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						TGCGGTACTGGCCCACGGAGC	0.627													44	43					0	0	0.003610	0	0
FLNC	2318	broad.mit.edu	37	7	128494221	128494221	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:128494221G>A	uc003vnz.3	+	40	6887	c.6678G>A	c.(6676-6678)CTG>CTA	p.L2226L	FLNC_uc003voa.3_Silent_p.L2193L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	2226	Intradomain insert.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						GGGACTTCCTGGGCCGGGAGC	0.711													6	7					0	0	0.004482	0	0
TSGA13	114960	broad.mit.edu	37	7	130357685	130357685	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:130357685T>C	uc003vqi.2	-	6	876	c.419A>G	c.(418-420)AAC>AGC	p.N140S	TSGA13_uc003vqj.2_Missense_Mutation_p.N140S	NM_052933	NP_443165	Q96PP4	TSG13_HUMAN	testis specific, 13	140										ovary(2)	2	Melanoma(18;0.0435)					CAGCCAGAGGTTCTCAGTGGG	0.468													229	248					0	0	0.003610	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192468	132192468	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:132192468G>A	uc003vra.3	-	2	1214	c.985C>T	c.(985-987)CAT>TAT	p.H329Y	PLXNA4_uc003vrc.2_Missense_Mutation_p.H329Y|PLXNA4_uc003vrb.2_Missense_Mutation_p.H329Y	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	329	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						TCATCTGGATGGACTCCAAGG	0.592													21	25					0	0	0.001882	0	0
EXOC4	60412	broad.mit.edu	37	7	133602416	133602416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:133602416C>T	uc003vrk.2	+	13	1987	c.1952C>T	c.(1951-1953)TCT>TTT	p.S651F	EXOC4_uc011kpo.1_Missense_Mutation_p.S550F|EXOC4_uc003vrl.2_Missense_Mutation_p.S261F|EXOC4_uc011kpp.1_Missense_Mutation_p.S183F	NM_021807	NP_068579	Q96A65	EXOC4_HUMAN	SEC8 protein isoform a	651					vesicle docking involved in exocytosis	exocyst	protein N-terminus binding			ovary(4)|large_intestine(3)|upper_aerodigestive_tract(1)|skin(1)	9		Esophageal squamous(399;0.129)				CTCTTGAAATCTCTACCAAAC	0.403													30	36					0	0	0.008361	0	0
TRIM24	8805	broad.mit.edu	37	7	138269649	138269649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:138269649C>T	uc003vuc.2	+	19	3321	c.3106C>T	c.(3106-3108)CGG>TGG	p.R1036W	TRIM24_uc003vub.2_Missense_Mutation_p.R1002W	NM_015905	NP_056989	O15164	TIF1A_HUMAN	transcriptional intermediary factor 1 alpha	1036					cellular response to estrogen stimulus|protein catabolic process|regulation of apoptosis|regulation of protein stability|transcription from RNA polymerase II promoter	cytoplasm	chromatin binding|estrogen response element binding|histone acetyl-lysine binding|p53 binding|transcription coactivator activity|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(3)|ovary(2)|stomach(1)|breast(1)|skin(1)	8						TGTACAGCCCCGGAAGAAACG	0.363													35	21					0	0	0.002836	0	0
WEE2	494551	broad.mit.edu	37	7	141420792	141420792	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:141420792G>A	uc003vwn.2	+	5	1222	c.816G>A	c.(814-816)GTG>GTA	p.V272V	FLJ40852_uc011krh.1_Intron|FLJ40852_uc010lnm.2_Intron|FLJ40852_uc010lnn.2_Intron|FLJ40852_uc003vwm.3_Intron|FLJ40852_uc010lno.2_Intron	NM_001105558	NP_001099028	P0C1S8	WEE2_HUMAN	WEE1 homolog 2	272	Protein kinase.				egg activation|female meiosis|female pronucleus assembly|meiotic metaphase II|meiotic prophase I|mitosis|negative regulation of oocyte development|regulation of meiosis I	centrosome|nucleus	ATP binding|magnesium ion binding|non-membrane spanning protein tyrosine kinase activity|protein serine/threonine kinase activity			ovary(1)|stomach(1)	2	Melanoma(164;0.0171)					ACCCCCATGTGGTACGTTACT	0.408													56	55					0	0	0.003610	0	0
CLEC5A	23601	broad.mit.edu	37	7	141635724	141635724	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:141635724G>A	uc003vwv.1	-	5	432	c.235C>T	c.(235-237)CAA>TAA	p.Q79*	CLEC5A_uc011krm.1_Nonsense_Mutation_p.Q56*|CLEC5A_uc003vww.1_Nonsense_Mutation_p.Q79*|CLEC5A_uc010lnq.1_Nonsense_Mutation_p.Q56*|CLEC5A_uc010lnr.1_Intron	NM_013252	NP_037384	Q9NY25	CLC5A_HUMAN	C-type lectin, superfamily member 5	79	C-type lectin.|Extracellular (Potential).				anti-apoptosis|cellular defense response|innate immune response|interspecies interaction between organisms|osteoblast development	cell surface|integral to plasma membrane	sugar binding|viral receptor activity				0	Melanoma(164;0.0171)					CATCTTGCTTGATAAAATTCC	0.413													15	37					0	0	0.002450	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672638	141672638	+	Silent	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:141672638C>A	uc003vwx.1	-	1	936	c.852G>T	c.(850-852)GGG>GGT	p.G284G		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	284	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					CTGCCATTATCCCAACACAAA	0.512													25	46					1.39806e-14	1.97373e-14	0.008361	1	0
KEL	3792	broad.mit.edu	37	7	142640048	142640048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:142640048G>A	uc003wcb.2	-	17	2065	c.1855C>T	c.(1855-1857)CCA>TCA	p.P619S		NM_000420	NP_000411	P23276	KELL_HUMAN	Kell blood group, metallo-endopeptidase	619	Extracellular (Potential).				proteolysis|vasoconstriction	integral to membrane|plasma membrane	metal ion binding|metalloendopeptidase activity|protein binding			ovary(3)|central_nervous_system(1)	4	Melanoma(164;0.059)					CTAGGTAATGGAAAGGCAGCA	0.547													33	37					0	0	0.003755	0	0
CLCN1	1180	broad.mit.edu	37	7	143043244	143043244	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:143043244C>T	uc003wcr.1	+	18	2271	c.2184C>T	c.(2182-2184)TCC>TCT	p.S728S	CLCN1_uc011ktc.1_Silent_p.S340S	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	728	Cytoplasmic (By similarity).				muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					TTCCTCCTTCCCTTGCTCTCC	0.582													8	27					0	0	0.004482	0	0
OR2F1	26211	broad.mit.edu	37	7	143657855	143657855	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:143657855C>T	uc003wds.1	+	1	836	c.792C>T	c.(790-792)TCC>TCT	p.S264S		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	264	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					AGCCCCACTCCAGTCCCTCTG	0.473													12	46					0	0	0.001368	0	0
OR2F1	26211	broad.mit.edu	37	7	143657918	143657918	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:143657918G>A	uc003wds.1	+	1	899	c.855G>A	c.(853-855)CTG>CTA	p.L285L		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	285	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					CACCAATGCTGAACCCCATGA	0.453													23	34					0	0	0.003330	0	0
OR2F1	26211	broad.mit.edu	37	7	143657927	143657927	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:143657927G>A	uc003wds.1	+	1	908	c.864G>A	c.(862-864)ATG>ATA	p.M288I		NM_012369	NP_036501	Q13607	OR2F1_HUMAN	olfactory receptor, family 2, subfamily F,	288	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	Melanoma(164;0.0903)					TGAACCCCATGATTTACAGCC	0.443													23	38					0	0	0.003954	0	0
OR2A25	392138	broad.mit.edu	37	7	143771481	143771481	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:143771481C>T	uc011ktx.1	+	1	169	c.169C>T	c.(169-171)CCC>TCC	p.P57S		NM_001004488	NP_001004488	A4D2G3	O2A25_HUMAN	olfactory receptor, family 2, subfamily A,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					ACTCCACACCCCCATGTACTT	0.577													27	18					0	0	0.007291	0	0
NOBOX	135935	broad.mit.edu	37	7	144098962	144098962	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:144098962C>T	uc011kue.1	-	3	292	c.292G>A	c.(292-294)GGC>AGC	p.G98S		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	98					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GGGTACTCACCCCTTGTGAGT	0.443													19	12					0	0	0.001882	0	0
CNTNAP2	26047	broad.mit.edu	37	7	148080748	148080748	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:148080748G>A	uc003weu.1	+	22	3999	c.3483G>A	c.(3481-3483)GGG>GGA	p.G1161G	CNTNAP2_uc003wev.1_5'UTR	NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	1161	Laminin G-like 4.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			TAGAAACAGGGAAAATTGACC	0.433										HNSCC(39;0.1)			26	28					0	0	0.005443	0	0
CUL1	8454	broad.mit.edu	37	7	148486871	148486871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:148486871G>A	uc010lpg.2	+	15	2153	c.1627G>A	c.(1627-1629)GGG>AGG	p.G543R	CUL1_uc003wey.2_Missense_Mutation_p.G543R|CUL1_uc003wez.2_Missense_Mutation_p.G433R|CUL1_uc003wfa.2_Missense_Mutation_p.G204R	NM_003592	NP_003583	Q13616	CUL1_HUMAN	cullin 1	543					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell cycle arrest|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|interspecies interaction between organisms|negative regulation of cell proliferation|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein ubiquitination|S phase of mitotic cell cycle|SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	cytosol|nucleoplasm|SCF ubiquitin ligase complex	ubiquitin protein ligase binding			lung(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00291)			GCTGAGCTCCGGGTCCTGGCC	0.483													79	90					0	0	0.003610	0	0
ZNF212	7988	broad.mit.edu	37	7	148951059	148951059	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:148951059G>A	uc003wfp.2	+	5	1137	c.1041G>A	c.(1039-1041)GAG>GAA	p.E347E		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	347					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			GTACACCTGAGGAGCCAGAGG	0.577													13	9					0	0	0.001855	0	0
ZNF862	643641	broad.mit.edu	37	7	149558499	149558500	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:149558499_149558500CC>TT	uc010lpn.2	+	7	2442_2443	c.2250_2251CC>TT	c.(2248-2253)ATCCGC>ATTTGC	p.R751C	ZNF862_uc003wgm.2_RNA	NM_001099220	NP_001092690	O60290	ZN862_HUMAN	zinc finger protein 862	751					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|nucleic acid binding|protein dimerization activity			skin(1)	1						ACCGGCACATCCGCACCGTCTT	0.609													21	24					0	0	0.004672	0	0
REPIN1	29803	broad.mit.edu	37	7	150069034	150069035	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:150069034_150069035CC>TT	uc010lpq.1	+	4	1193_1194	c.704_705CC>TT	c.(703-705)CCC>CTT	p.P235L	REPIN1_uc003whd.2_Missense_Mutation_p.P224L|REPIN1_uc010lpr.1_Missense_Mutation_p.P292L|REPIN1_uc003whc.2_Missense_Mutation_p.P235L|REPIN1_uc003whe.2_Missense_Mutation_p.P235L	NM_013400	NP_037532	Q9BWE0	REPI1_HUMAN	replication initiator 1 isoform 1	235					DNA replication	nuclear origin of replication recognition complex	DNA binding|zinc ion binding			pancreas(1)	1	Ovarian(565;0.183)|Melanoma(164;0.226)		OV - Ovarian serous cystadenocarcinoma(82;0.011)			GTCGACCGCCCCTTCCAGTGTG	0.525													8	15					0	0	0.004672	0	0
GIMAP4	55303	broad.mit.edu	37	7	150269849	150269849	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:150269849G>A	uc003whl.2	+	3	773	c.691G>A	c.(691-693)GAG>AAG	p.E231K	GIMAP4_uc011kuu.1_Missense_Mutation_p.E92K|GIMAP4_uc011kuv.1_Missense_Mutation_p.E245K	NM_018326	NP_060796	Q9NUV9	GIMA4_HUMAN	GTPase, IMAP family member 4	231	Potential.						GTP binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(82;0.0179)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		AAGGGCGGAGGAGGAGATCCA	0.537													14	18					0	0	0.002450	0	0
GIMAP1	170575	broad.mit.edu	37	7	150417449	150417449	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:150417449C>T	uc003whq.2	+	3	444	c.357C>T	c.(355-357)ACC>ACT	p.T119T	GIMAP1_uc003whp.2_Silent_p.T127T	NM_130759	NP_570115	Q8WWP7	GIMA1_HUMAN	GTPase, IMAP family member 1	119	Cytoplasmic (Potential).					endoplasmic reticulum membrane|integral to membrane	GTP binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCCTGGTGACCCAGTTGGGTC	0.612													14	18					0	0	0.004990	0	0
GIMAP5	55340	broad.mit.edu	37	7	150439922	150439922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:150439922G>A	uc003whr.1	+	3	1047	c.695G>A	c.(694-696)AGA>AAA	p.R232K	GIMAP5_uc010lpu.2_Missense_Mutation_p.R90K	NM_018384	NP_060854	Q96F15	GIMA5_HUMAN	GTPase, IMAP family member 5	232	Cytoplasmic (Potential).					integral to membrane|mitochondrial outer membrane	GTP binding			ovary(1)|central_nervous_system(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0145)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CTGCTCCAAAGAACTGGAGCT	0.587													22	29					0	0	0.002299	0	0
CRYGN	155051	broad.mit.edu	37	7	151127247	151127247	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:151127247A>G	uc003wke.2	-	4	532	c.436T>C	c.(436-438)TTC>CTC	p.F146L	CRYGN_uc003wkf.2_3'UTR|CRYGN_uc003wkg.2_RNA	NM_144727	NP_653328	Q8WXF5	CRGN_HUMAN	gammaN-crystallin	146											0			OV - Ovarian serous cystadenocarcinoma(82;0.00358)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TCAGCTCCGAAGCTTCTAGGG	0.562													15	18					0	0	0.002450	0	0
MLL3	58508	broad.mit.edu	37	7	151880115	151880115	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:151880115T>C	uc003wla.2	-	35	5428	c.5209A>G	c.(5209-5211)AAA>GAA	p.K1737E	MLL3_uc003wkz.2_Missense_Mutation_p.K798E	NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	1737	Gln-rich.				intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		AAAGGATCTTTAAAAAGCTCC	0.343			N		medulloblastoma								121	127					0	0	0.003610	0	0
DPP6	1804	broad.mit.edu	37	7	154172103	154172103	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:154172103C>T	uc003wlk.2	+	3	567	c.438C>T	c.(436-438)CCC>CCT	p.P146P	DPP6_uc003wli.2_Silent_p.P82P|DPP6_uc003wlj.2_Silent_p.P146P|DPP6_uc010lqh.1_Silent_p.P84P|DPP6_uc003wlm.2_Silent_p.P84P|DPP6_uc011kvq.1_Silent_p.P84P	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	146	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TTCATGACCCCGAGGCTAAGT	0.433													25	48					0	0	0.005443	0	0
DPP6	1804	broad.mit.edu	37	7	154561253	154561253	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:154561253C>T	uc003wlk.2	+	9	1139	c.1010C>T	c.(1009-1011)CCC>CTC	p.P337L	DPP6_uc003wli.2_Missense_Mutation_p.P273L|DPP6_uc003wlm.2_Missense_Mutation_p.P275L|DPP6_uc011kvq.1_Missense_Mutation_p.P230L	NM_130797	NP_570629	P42658	DPP6_HUMAN	dipeptidyl-peptidase 6 isoform 1	337	Extracellular (Potential).				cell death|proteolysis	integral to membrane	dipeptidyl-peptidase activity|serine-type peptidase activity			pancreas(3)|breast(1)	4	all_neural(206;0.181)	all_hematologic(28;0.0044)|all_lung(21;0.0176)|Lung NSC(21;0.0204)	OV - Ovarian serous cystadenocarcinoma(82;0.0562)			TCCATCTACCCCACCGTGAAG	0.547													9	13					0	0	0.004482	0	0
DNAJB6	10049	broad.mit.edu	37	7	157155859	157155859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr7:157155859C>T	uc003wnk.2	+	3	224	c.70C>T	c.(70-72)CGG>TGG	p.R24W	DNAJB6_uc003wnj.2_Missense_Mutation_p.R24W|DNAJB6_uc003wnl.2_Missense_Mutation_p.R11W|DNAJB6_uc011kvy.1_Intron|DNAJB6_uc011kvz.1_Missense_Mutation_p.R24W|DNAJB6_uc010lqt.2_Missense_Mutation_p.R24W	NM_058246	NP_490647	O75190	DNJB6_HUMAN	DnaJ (Hsp40) homolog, subfamily B, member 6	24	Interaction with HSP70.|J.				intermediate filament organization|negative regulation of caspase activity|protein folding|response to unfolded protein	nucleus|perinuclear region of cytoplasm	ATPase activator activity|chaperone binding|heat shock protein binding|unfolded protein binding			ovary(2)	2	all_neural(206;0.181)	all_epithelial(9;0.000606)|all_hematologic(28;0.00287)|Acute lymphoblastic leukemia(9;0.0647)|Ovarian(593;0.196)	OV - Ovarian serous cystadenocarcinoma(82;0.00399)	UCEC - Uterine corpus endometrioid carcinoma (81;0.172)		TCCAAGATATCGGAAACTGGC	0.383													12	9					0	0	0.000978	0	0
ERICH1	157697	broad.mit.edu	37	8	665918	665918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:665918G>A	uc003wph.2	-	2	177	c.112C>T	c.(112-114)CCA>TCA	p.P38S	ERICH1_uc011kwh.1_Missense_Mutation_p.P38S|ERICH1_uc003wpe.1_Intron	NM_207332	NP_997215	Q86X53	ERIC1_HUMAN	glutamate-rich 1	38										large_intestine(2)	2		Colorectal(14;0.158)|Ovarian(12;0.17)|Myeloproliferative disorder(644;0.185)|Hepatocellular(245;0.236)		Epithelial(5;3.29e-14)|BRCA - Breast invasive adenocarcinoma(11;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(5;3.65e-06)|READ - Rectum adenocarcinoma(1;0.0325)		TTCTTTGGTGGATTTTGGACG	0.502													41	57					0	0	0.002852	0	0
MYOM2	9172	broad.mit.edu	37	8	2057237	2057237	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:2057237T>G	uc003wpx.3	+	25	3233	c.3095T>G	c.(3094-3096)GTT>GGT	p.V1032G	MYOM2_uc011kwi.1_Missense_Mutation_p.V457G	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	1032					muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AAGGGGCGGGTTCGCTTCTGG	0.443													21	34					0	0	0.002780	0	0
CSMD1	64478	broad.mit.edu	37	8	2815238	2815238	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:2815238C>T	uc011kwk.1	-	63	10187	c.9797G>A	c.(9796-9798)GGG>GAG	p.G3266E	CSMD1_uc011kwj.1_Missense_Mutation_p.G2595E|CSMD1_uc010lrg.2_Missense_Mutation_p.G1157E	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	3266	Extracellular (Potential).|Sushi 27.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		GGTCTGTATCCCACTCCATGT	0.448													6	10					0	0	0.004482	0	0
CSMD1	64478	broad.mit.edu	37	8	2832092	2832092	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:2832092A>C	uc011kwk.1	-	56	9014	c.8624T>G	c.(8623-8625)CTG>CGG	p.L2875R	CSMD1_uc011kwj.1_Missense_Mutation_p.L2204R|CSMD1_uc010lrg.2_Missense_Mutation_p.L885R	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2875	Sushi 21.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		ATAGGTAAACAGCTCTCCAGT	0.537													4	11					0	0	0.000248	0	0
DEFA1B	728358	broad.mit.edu	37	8	6873538	6873538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:6873538C>T	uc003wqz.1	-	3	344	c.259G>A	c.(259-261)GGA>AGA	p.G87R		NM_005217	NP_005208	P59665	DEF1_HUMAN	defensin, alpha 3 preproprotein	87					chemotaxis|defense response to bacterium|defense response to fungus|immune response|killing of cells of other organism|response to virus	extracellular space					0						CAGAGTCTTCCCTGGTAGATG	0.473													13	45					0	0	0.007413	0	0
RP1L1	94137	broad.mit.edu	37	8	10469369	10469369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:10469369C>T	uc003wtc.2	-	4	2468	c.2239G>A	c.(2239-2241)GAT>AAT	p.D747N		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	747					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		GAAACAAAATCCGAGTGGACT	0.652													17	19					0	0	0.006122	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17055097	17055097	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:17055097G>A	uc003wxe.2	+	5	777	c.380G>A	c.(379-381)CGA>CAA	p.R127Q		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	127	DHHC-type.					integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		CTAGCCATCCGATACTGTGAC	0.353													30	108					0	0	0.005524	0	0
ZDHHC2	51201	broad.mit.edu	37	8	17067919	17067919	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:17067919C>T	uc003wxe.2	+	10	1277	c.880C>T	c.(880-882)CCA>TCA	p.P294S		NM_016353	NP_057437	Q9UIJ5	ZDHC2_HUMAN	zinc finger, DHHC-type containing 2	294						integral to membrane	acyltransferase activity|zinc ion binding				0				Colorectal(111;0.0697)|COAD - Colon adenocarcinoma(73;0.244)		CTGCTCCTTTCCAACTTGCCT	0.383													25	35					0	0	0.002096	0	0
SLC7A2	6542	broad.mit.edu	37	8	17415852	17415852	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:17415852C>T	uc011kyc.1	+	8	1413	c.1244C>T	c.(1243-1245)TCC>TTC	p.S415F	SLC7A2_uc011kyd.1_Missense_Mutation_p.S454F|SLC7A2_uc011kye.1_Missense_Mutation_p.S455F|SLC7A2_uc011kyf.1_Missense_Mutation_p.S415F	NM_001008539	NP_001008539	P52569	CTR2_HUMAN	solute carrier family 7, member 2 isoform 2	415	Helical; (Potential).				cellular amino acid metabolic process|ion transport	cytoplasm|integral to plasma membrane|membrane fraction	basic amino acid transmembrane transporter activity			ovary(2)|skin(1)	3				Colorectal(111;0.0577)|COAD - Colon adenocarcinoma(73;0.216)	L-Lysine(DB00123)|L-Ornithine(DB00129)	GACATGATGTCCATTGGCACA	0.527													25	48					0	0	0.003954	0	0
PCM1	5108	broad.mit.edu	37	8	17823920	17823920	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:17823920C>T	uc003wyi.3	+	20	3581	c.3159C>T	c.(3157-3159)TTC>TTT	p.F1053F	PCM1_uc011kyh.1_Silent_p.F1053F|PCM1_uc003wyj.3_Silent_p.F1054F	NM_006197	NP_006188	Q15154	PCM1_HUMAN	pericentriolar material 1	1053					centrosome organization|cilium assembly|G2/M transition of mitotic cell cycle|interkinetic nuclear migration|microtubule anchoring|negative regulation of neurogenesis|protein localization to centrosome	centriolar satellite|cytosol|nuclear membrane|pericentriolar material	identical protein binding		PCM1/JAK2(30)	haematopoietic_and_lymphoid_tissue(30)|breast(4)|ovary(2)	36				Colorectal(111;0.0789)		AAGTACACTTCATAATGCACC	0.393			T	RET|JAK2	papillary thyroid|CML|MPD								23	100					0	0	0.002780	0	0
NPM2	10361	broad.mit.edu	37	8	21891767	21891767	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:21891767A>C	uc003xab.2	+	6	1170	c.512A>C	c.(511-513)AAG>ACG	p.K171T	NPM2_uc003xac.2_Missense_Mutation_p.K171T|NPM2_uc003xad.2_Missense_Mutation_p.K171T|NPM2_uc003xae.2_Missense_Mutation_p.K171T|NPM2_uc003xaf.2_Intron	NM_182795	NP_877724	Q86SE8	NPM2_HUMAN	nucleoplasmin 2	171					chromatin remodeling|embryo development|oocyte differentiation|positive regulation of meiosis|regulation of exit from mitosis|single fertilization	cytoplasmic chromatin|nuclear chromatin	histone binding|nucleic acid binding				0				Colorectal(74;8.48e-05)|READ - Rectum adenocarcinoma(5;0.0276)|COAD - Colon adenocarcinoma(73;0.0618)		GTGCCCCAGAAGCAGGCGAGC	0.463													10	36					0	0	0.001855	0	0
LGI3	203190	broad.mit.edu	37	8	22006231	22006231	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:22006231G>A	uc003xav.2	-	8	1378	c.1089C>T	c.(1087-1089)GGC>GGT	p.G363G	LGI3_uc010ltu.2_Silent_p.G339G	NM_139278	NP_644807	Q8N145	LGI3_HUMAN	leucine-rich repeat LGI family, member 3	363	EAR 4.				exocytosis	cell junction|extracellular region|synaptic vesicle|synaptosome				ovary(1)	1				Colorectal(74;0.00189)|COAD - Colon adenocarcinoma(73;0.0612)|READ - Rectum adenocarcinoma(644;0.0999)		GGGAGTAGAAGCCATTCTGGT	0.632													14	15					0	0	0.004990	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22969266	22969266	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:22969266G>A	uc003xcy.2	+	2	295	c.94G>A	c.(94-96)GAG>AAG	p.E32K	TNFRSF10C_uc011kzr.1_Intron	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	32	TNFR-Cys 1.				apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		TGCCCGGCAGGAGGAAGTTCC	0.557													6	22					0	0	0.001984	0	0
TNFRSF10A	8797	broad.mit.edu	37	8	23049230	23049230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:23049230C>T	uc003xda.2	-	10	1449	c.1384G>A	c.(1384-1386)GGC>AGC	p.G462S		NM_003844	NP_003835	O00220	TR10A_HUMAN	tumor necrosis factor receptor superfamily,	462	Cytoplasmic (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors		caspase activator activity|death receptor activity|TRAIL binding|transcription factor binding			central_nervous_system(3)|ovary(2)|skin(1)	6		Prostate(55;0.0421)|Breast(100;0.14)		Colorectal(74;0.016)|COAD - Colon adenocarcinoma(73;0.0646)		ACGGCAGAGCCTGTGCCATCT	0.423													18	16					0	0	0.001523	0	0
ADAM28	10863	broad.mit.edu	37	8	24170965	24170965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:24170965G>A	uc003xdy.2	+	6	531	c.448G>A	c.(448-450)GGA>AGA	p.G150R	ADAM28_uc003xdx.2_Missense_Mutation_p.G150R|ADAM28_uc011kzz.1_Intron|ADAM28_uc011laa.1_RNA	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	150					proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ACATCGGGATGGACAGGAGCA	0.448													15	45					0	0	0.002450	0	0
ADAM28	10863	broad.mit.edu	37	8	24184083	24184083	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:24184083G>A	uc003xdy.2	+	10	990	c.907G>A	c.(907-909)GGA>AGA	p.G303R	ADAM28_uc003xdx.2_Missense_Mutation_p.G303R|ADAM28_uc011kzz.1_Missense_Mutation_p.G70R|ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_5'UTR	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	303	Peptidase M12B.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AGAACTTGCTGGAACGACTGT	0.353													30	102					0	0	0.001786	0	0
TRIM35	23087	broad.mit.edu	37	8	27145561	27145562	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:27145561_27145562GG>AA	uc003xfl.1	-	6	1069_1070	c.987_988CC>TT	c.(985-990)TACCGC>TATTGC	p.R330C	TRIM35_uc010lup.1_3'UTR	NM_171982	NP_741983	Q9UPQ4	TRI35_HUMAN	tripartite motif-containing 35 isoform 2	330	B30.2/SPRY.				apoptosis|induction of apoptosis|negative regulation of mitotic cell cycle	cytoplasm|nucleus	zinc ion binding				0		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0213)|Epithelial(17;9.34e-10)|Colorectal(74;0.141)		ACCTGCACGCGGTAGCCATGGT	0.653													14	21					0	0	0.004672	0	0
SCARA5	286133	broad.mit.edu	37	8	27737269	27737269	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:27737269G>A	uc003xgj.2	-	8	1608	c.1168C>T	c.(1168-1170)CCG>TCG	p.P390S	SCARA5_uc010luz.2_Missense_Mutation_p.P165S	NM_173833	NP_776194	Q6ZMJ2	SCAR5_HUMAN	scavenger receptor class A, member 5	390	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|iron ion transmembrane transport|protein homotrimerization	integral to plasma membrane	ferritin receptor activity|scavenger receptor activity			central_nervous_system(1)|skin(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.023)|KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)|Colorectal(74;0.228)		ATCATCATCGGGGCCTCCACG	0.662													15	14					0	0	0.003163	0	0
C8orf80	389643	broad.mit.edu	37	8	27931884	27931884	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:27931884C>T	uc003xgm.3	-	2	186	c.43_splice	c.e2+1	p.V15_splice		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center							nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		AAAGATGTTACCTGGATGCGG	0.428													10	31					0	0	0.000978	0	0
ELP3	55140	broad.mit.edu	37	8	27995239	27995239	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:27995239C>T	uc003xgo.3	+	10	1079	c.931C>T	c.(931-933)CGT>TGT	p.R311C	ELP3_uc003xgn.3_Missense_Mutation_p.R296C|ELP3_uc011laq.1_Missense_Mutation_p.R239C|ELP3_uc011lar.1_Missense_Mutation_p.R219C|ELP3_uc011las.1_Missense_Mutation_p.R192C|ELP3_uc011lat.1_Missense_Mutation_p.R192C	NM_018091	NP_060561	Q9H9T3	ELP3_HUMAN	elongation protein 3 homolog	311					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|DNA-directed RNA polymerase II, holoenzyme|nucleolus|transcription elongation factor complex	histone acetyltransferase activity|iron-sulfur cluster binding|metal ion binding|phosphorylase kinase regulator activity|protein binding				0		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.127)|Kidney(114;0.151)|Colorectal(74;0.183)		CCCTGCTTTTCGTCCCGATGG	0.453													28	33					0	0	0.002096	0	0
EXTL3	2137	broad.mit.edu	37	8	28573590	28573590	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:28573590C>T	uc003xgz.1	+	3	607	c.14C>T	c.(13-15)ACC>ATC	p.T5I		NM_001440	NP_001431	O43909	EXTL3_HUMAN	exostoses-like 3	5	Cytoplasmic (Potential).					integral to membrane|intrinsic to endoplasmic reticulum membrane	glucuronyl-galactosyl-proteoglycan 4-alpha-N-acetylglucosaminyltransferase activity|metal ion binding|protein binding			skin(2)	2		Ovarian(32;0.069)		KIRC - Kidney renal clear cell carcinoma(542;0.107)|Kidney(114;0.129)|Colorectal(74;0.228)		ACAGGCTATACCATGCTGCGG	0.592													15	26					0	0	0.006122	0	0
TEX15	56154	broad.mit.edu	37	8	30699662	30699662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:30699662G>A	uc003xil.2	-	1	6872	c.6872C>T	c.(6871-6873)TCT>TTT	p.S2291F		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2291										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		CAACATCGTAGAAATACTAAA	0.338													9	38					0	0	0.004482	0	0
UNC5D	137970	broad.mit.edu	37	8	35544065	35544065	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:35544065G>A	uc003xjr.1	+	7	1250	c.922G>A	c.(922-924)GAT>AAT	p.D308N	UNC5D_uc003xjs.1_Missense_Mutation_p.D303N|UNC5D_uc003xjt.1_Missense_Mutation_p.D77N	NM_080872	NP_543148	Q6UXZ4	UNC5D_HUMAN	unc-5 homolog D precursor	308	Extracellular (Potential).|TSP type-1 2.				apoptosis|axon guidance	integral to membrane	receptor activity			upper_aerodigestive_tract(2)|ovary(2)|pancreas(1)|skin(1)	6				READ - Rectum adenocarcinoma(1;1.31e-05)|Colorectal(1;0.000723)		CTTTGAAGTGGATGGGAGCTG	0.517													8	18					0	0	0.006214	0	0
ERLIN2	11160	broad.mit.edu	37	8	37611016	37611017	+	Nonsense_Mutation	DNP	AC	GA	GA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:37611016_37611017AC>GA	uc003xke.3	+	11	903_904	c.788_789AC>GA	c.(787-789)TAC>TGA	p.Y263*		NM_007175	NP_009106	O94905	ERLN2_HUMAN	ER lipid raft associated 2 isoform 1	263	Interaction with ERLIN1.|Lumenal (Potential).				ER-associated protein catabolic process	endoplasmic reticulum membrane|integral to membrane|plasma membrane	protein binding				0		Lung NSC(58;0.174)	BRCA - Breast invasive adenocarcinoma(5;6.14e-24)|LUSC - Lung squamous cell carcinoma(8;3.5e-10)			GCTGAGTGCTACACTGCTATGA	0.495													9	22					0	0	0.004672	0	0
RAB11FIP1	80223	broad.mit.edu	37	8	37734845	37734845	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:37734845G>A	uc003xkm.1	-	2	640	c.596C>T	c.(595-597)TCG>TTG	p.S199L	RAB11FIP1_uc010lvz.1_Missense_Mutation_p.S47L|RAB11FIP1_uc003xkn.1_Missense_Mutation_p.S199L|RAB11FIP1_uc003xkp.1_Missense_Mutation_p.S47L	NM_001002814	NP_001002814	Q6WKZ4	RFIP1_HUMAN	RAB11 family interacting protein 1 isoform 3	199					protein transport	centrosome|phagocytic vesicle membrane|recycling endosome	protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Lung NSC(58;0.118)|all_lung(54;0.195)	LUSC - Lung squamous cell carcinoma(8;3.62e-11)			ACTGTCGACCGAAGGTGTCGT	0.463													60	69					0	0	0.003610	0	0
PLEKHA2	59339	broad.mit.edu	37	8	38775471	38775471	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:38775471C>T	uc003xmi.3	+	2	258	c.24C>T	c.(22-24)AAC>AAT	p.N8N	PLEKHA2_uc011lce.1_Intron	NM_021623	NP_067636	Q9HB19	PKHA2_HUMAN	pleckstrin homology domain containing, family A	8	PH 1.				positive regulation of cell-matrix adhesion	cytoplasm|nucleus|plasma membrane|protein complex	fibronectin binding|laminin binding				0		all_lung(54;0.0413)|Lung NSC(58;0.115)|Hepatocellular(245;0.152)	LUSC - Lung squamous cell carcinoma(45;4.68e-08)|COAD - Colon adenocarcinoma(9;0.235)			ATCGGCAGAACCGAATCTGTG	0.557													22	16					0	0	0.003954	0	0
ADAM9	8754	broad.mit.edu	37	8	38899581	38899581	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:38899581C>T	uc003xmr.2	+	12	1325	c.1247C>T	c.(1246-1248)TCC>TTC	p.S416F	ADAM9_uc011lcf.1_RNA|ADAM9_uc011lcg.1_RNA|ADAM9_uc010lwr.2_RNA	NM_003816	NP_003807	Q13443	ADAM9_HUMAN	ADAM metallopeptidase domain 9 isoform 1	416	Extracellular (Potential).|Disintegrin.				activation of MAPKK activity|cell-cell adhesion mediated by integrin|cell-matrix adhesion|keratinocyte differentiation|monocyte activation|PMA-inducible membrane protein ectodomain proteolysis|PMA-inducible membrane protein ectodomain proteolysis|positive regulation of cell adhesion mediated by integrin|positive regulation of keratinocyte migration|positive regulation of macrophage fusion|positive regulation of membrane protein ectodomain proteolysis|positive regulation of protein secretion|response to calcium ion|response to glucocorticoid stimulus|response to hydrogen peroxide|response to manganese ion|response to tumor necrosis factor|transforming growth factor beta receptor signaling pathway	extracellular space|extracellular space|integral to membrane|intrinsic to external side of plasma membrane	collagen binding|integrin binding|laminin binding|metalloendopeptidase activity|protein kinase C binding|SH3 domain binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2		all_lung(54;0.00292)|Lung NSC(58;0.0115)|Hepatocellular(245;0.0153)	LUSC - Lung squamous cell carcinoma(45;2.74e-07)			AGTGCTCCCTCCTGTGGTAAT	0.413													49	36					0	0	0.003610	0	0
ADAM18	8749	broad.mit.edu	37	8	39581281	39581281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:39581281G>A	uc003xni.2	+	19	2032	c.2032G>A	c.(2032-2034)GAA>AAA	p.E678K	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.E654K	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	678	Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			CTTTTATACTGAAAAAGGCTA	0.299													50	45					0	0	0.003610	0	0
IDO1	3620	broad.mit.edu	37	8	39785653	39785653	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:39785653C>T	uc003xnm.2	+	10	1275	c.1161C>T	c.(1159-1161)TTC>TTT	p.F387F	IDO1_uc003xnn.2_RNA	NM_002164	NP_002155	P14902	I23O1_HUMAN	indoleamine 2,3-dioxygenase 1	387					female pregnancy|tryptophan catabolic process	cytosol	electron carrier activity|heme binding|indoleamine 2,3-dioxygenase activity|tryptophan 2,3-dioxygenase activity			central_nervous_system(2)	2					L-Tryptophan(DB00150)	TAATGAATTTCCTGAAGACTG	0.418													13	12					0	0	0.002450	0	0
ANK1	286	broad.mit.edu	37	8	41542162	41542162	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:41542162G>A	uc003xok.2	-	37	4521	c.4437C>T	c.(4435-4437)ATC>ATT	p.I1479I	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoh.2_Silent_p.I795I|ANK1_uc003xoi.2_Silent_p.I1479I|ANK1_uc003xoj.2_Silent_p.I1479I|ANK1_uc003xol.2_Silent_p.I1479I|ANK1_uc003xom.2_Silent_p.I1520I	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	1479	55 kDa regulatory domain.|Death.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			GCATGTTCACGATCTCGCCAC	0.602													20	18					0	0	0.002780	0	0
ANK1	286	broad.mit.edu	37	8	41585482	41585482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:41585482C>T	uc003xok.2	-	4	355	c.271G>A	c.(271-273)GAT>AAT	p.D91N	NKX6-3_uc010lxa.1_Intron|ANK1_uc003xoi.2_Missense_Mutation_p.D91N|ANK1_uc003xoj.2_Missense_Mutation_p.D91N|ANK1_uc003xol.2_Missense_Mutation_p.D91N|ANK1_uc003xom.2_Missense_Mutation_p.D124N	NM_020476	NP_065209	P16157	ANK1_HUMAN	ankyrin 1 isoform 1	91	89 kDa domain.|ANK 2.				axon guidance|cytoskeleton organization|exocytosis|maintenance of epithelial cell apical/basal polarity|signal transduction	basolateral plasma membrane|cytosol|sarcomere|sarcoplasmic reticulum|spectrin-associated cytoskeleton	cytoskeletal adaptor activity|enzyme binding|protein binding|spectrin binding|structural constituent of cytoskeleton			ovary(3)|central_nervous_system(3)|lung(2)|breast(1)	9	Ovarian(28;0.00541)|Colorectal(14;0.0398)|Lung SC(25;0.211)	all_lung(54;0.000626)|Lung NSC(58;0.00245)|Esophageal squamous(32;0.0559)|Hepatocellular(245;0.0663)|Renal(179;0.188)	OV - Ovarian serous cystadenocarcinoma(14;0.000984)|Lung(22;0.00108)|Colorectal(10;0.00245)|LUSC - Lung squamous cell carcinoma(45;0.00392)|COAD - Colon adenocarcinoma(11;0.0264)			ACCACCTCATCCTGCCCGGCT	0.602													23	35					0	0	0.003954	0	0
ST18	9705	broad.mit.edu	37	8	53030987	53030987	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:53030987C>T	uc003xqz.2	-	19	2926	c.2770G>A	c.(2770-2772)GAA>AAA	p.E924K	ST18_uc011ldq.1_Missense_Mutation_p.E571K|ST18_uc011ldr.1_Missense_Mutation_p.E889K|ST18_uc011lds.1_Missense_Mutation_p.E829K|ST18_uc003xra.2_Missense_Mutation_p.E924K	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	924	Potential.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				CTAATTTCTTCATCACTCTCT	0.313													37	30					0	0	0.003755	0	0
RP1	6101	broad.mit.edu	37	8	55534729	55534729	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:55534729G>A	uc003xsd.1	+	3	816	c.668G>A	c.(667-669)GGA>GAA	p.G223E	RP1_uc011ldy.1_Missense_Mutation_p.G223E	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	223	Doublecortin 2.				axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GTGGCGGCAGGAAGGGAGCCA	0.478													8	44					0	0	0.003080	0	0
RP1	6101	broad.mit.edu	37	8	55540061	55540061	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:55540061G>A	uc003xsd.1	+	4	3767	c.3619G>A	c.(3619-3621)GAT>AAT	p.D1207N	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1207					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			GGTTCCAATAGATCTTTCTGC	0.428													42	47					0	0	0.006230	0	0
LYN	4067	broad.mit.edu	37	8	56864641	56864641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:56864641C>T	uc003xsk.3	+	7	886	c.604C>T	c.(604-606)CCC>TCC	p.P202S	LYN_uc003xsl.3_Missense_Mutation_p.P181S	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	202	SH2.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			AATCACTTTTCCCTGTATCAG	0.363													8	48					0	0	0.004482	0	0
SDR16C5	195814	broad.mit.edu	37	8	57228860	57228860	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:57228860C>T	uc003xsy.1	-	2	685	c.47G>A	c.(46-48)GGA>GAA	p.G16E	SDR16C5_uc010lyk.1_Missense_Mutation_p.G16E|SDR16C5_uc010lyl.1_Missense_Mutation_p.G16E	NM_138969	NP_620419	Q8N3Y7	RDHE2_HUMAN	epidermal retinal dehydrogenase 2	16	Helical; (Potential).				detection of light stimulus involved in visual perception|keratinocyte proliferation|retinal metabolic process|retinol metabolic process	endoplasmic reticulum membrane|integral to membrane|integral to membrane of membrane fraction	binding|retinol dehydrogenase activity			ovary(1)|central_nervous_system(1)|skin(1)	3						CAGTGATTTTCCTAAGAAAAT	0.418													24	22					0	0	0.007291	0	0
CHD7	55636	broad.mit.edu	37	8	61693655	61693655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:61693655C>T	uc003xue.2	+	3	2239	c.1762C>T	c.(1762-1764)CCA>TCA	p.P588S		NM_017780	NP_060250	Q9P2D1	CHD7_HUMAN	chromodomain helicase DNA binding protein 7	588					central nervous system development|chromatin modification|cognition|cranial nerve development|face development|heart morphogenesis|in utero embryonic development|inner ear morphogenesis|nose development|palate development|regulation of growth hormone secretion|regulation of transcription, DNA-dependent|retina development in camera-type eye|skeletal system development|T cell differentiation|transcription, DNA-dependent	nucleus	ATP binding|chromatin binding|DNA binding|helicase activity	p.556_871dup(1)		ovary(4)|large_intestine(1)|central_nervous_system(1)|lung(1)|breast(1)|pancreas(1)	9		all_cancers(86;0.2)|all_lung(136;0.0402)|Lung NSC(129;0.0459)|all_epithelial(80;0.0477)	BRCA - Breast invasive adenocarcinoma(89;0.143)			TGATTACCTGCCATCAATAGA	0.453													5	16					0	0	0.000602	0	0
ARMC1	55156	broad.mit.edu	37	8	66517673	66517673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:66517673G>A	uc003xvl.2	-	5	801	c.566C>T	c.(565-567)TCA>TTA	p.S189L	ARMC1_uc011leo.1_Missense_Mutation_p.S87L	NM_018120	NP_060590	Q9NVT9	ARMC1_HUMAN	armadillo repeat-containing protein	189					metal ion transport		metal ion binding			skin(1)	1			Epithelial(68;0.103)|OV - Ovarian serous cystadenocarcinoma(28;0.235)			TTTCAAATCTGAACGGATTCG	0.333													28	49					0	0	0.004289	0	0
TRIM55	84675	broad.mit.edu	37	8	67062070	67062070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:67062070G>A	uc003xvv.2	+	5	1020	c.794G>A	c.(793-795)GGA>GAA	p.G265E	TRIM55_uc003xvu.2_Missense_Mutation_p.G265E|TRIM55_uc003xvw.2_Missense_Mutation_p.G265E|TRIM55_uc003xvx.2_Intron	NM_184085	NP_908973	Q9BYV6	TRI55_HUMAN	tripartite motif-containing 55 isoform 1	265						cytoplasm|microtubule|nucleus	signal transducer activity|zinc ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5		Lung NSC(129;0.138)|all_lung(136;0.221)	Epithelial(68;0.0136)|all cancers(69;0.0582)|BRCA - Breast invasive adenocarcinoma(89;0.0628)|OV - Ovarian serous cystadenocarcinoma(28;0.0904)			GTTGAGTCAGGAATTCAGTTT	0.428													28	30					0	0	0.002096	0	0
C8orf45	157777	broad.mit.edu	37	8	67796106	67796106	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:67796106G>A	uc003xwz.3	+	9	1121	c.950G>A	c.(949-951)GGG>GAG	p.G317E	C8orf45_uc003xwv.2_Missense_Mutation_p.G317E|C8orf45_uc011lev.1_Missense_Mutation_p.G317E|C8orf45_uc011lew.1_Missense_Mutation_p.G248E|C8orf45_uc011lex.1_Missense_Mutation_p.G75E|C8orf45_uc003xwy.3_Missense_Mutation_p.G317E	NM_173518	NP_775789	Q4G0Z9	CH045_HUMAN	minichromosome maintenance complex	317					DNA replication		ATP binding|DNA binding			ovary(1)	1	Breast(64;0.186)		Epithelial(68;0.00384)|OV - Ovarian serous cystadenocarcinoma(28;0.00913)|all cancers(69;0.0175)|BRCA - Breast invasive adenocarcinoma(89;0.206)			ACCCCTCCTGGGACTTACAAT	0.408													26	21					0	0	0.007291	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70591657	70591657	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:70591657G>A	uc003xyl.2	-	8	2687	c.1980C>T	c.(1978-1980)TTC>TTT	p.F660F	SLCO5A1_uc010lzb.2_Silent_p.F605F|SLCO5A1_uc011lfa.1_RNA|SLCO5A1_uc003xyk.2_Silent_p.F660F	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	660	Helical; Name=10; (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			ATGCTGTGATGAAGGTGACTA	0.423													18	69					0	0	0.007413	0	0
SLCO5A1	81796	broad.mit.edu	37	8	70667684	70667684	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:70667684C>T	uc003xyl.2	-	4	1940	c.1233G>A	c.(1231-1233)TCG>TCA	p.S411S	SLCO5A1_uc010lzb.2_Silent_p.S411S|SLCO5A1_uc011lfa.1_Intron|SLCO5A1_uc003xyk.2_Silent_p.S411S|SLCO5A1_uc010lzc.2_Silent_p.S411S	NM_030958	NP_112220	Q9H2Y9	SO5A1_HUMAN	solute carrier organic anion transporter family,	411	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|upper_aerodigestive_tract(1)	4	Breast(64;0.0654)		Epithelial(68;0.0141)|OV - Ovarian serous cystadenocarcinoma(28;0.0315)|all cancers(69;0.0594)			CAAATCCCATCGAAGAAACTT	0.294													7	47					0	0	0.006214	0	0
PRDM14	63978	broad.mit.edu	37	8	70980555	70980555	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:70980555G>A	uc003xym.2	-	4	1024	c.822C>T	c.(820-822)ATC>ATT	p.I274I		NM_024504	NP_078780	Q9GZV8	PRD14_HUMAN	PR domain containing 14	274	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3	Breast(64;0.193)		Epithelial(68;0.00508)|all cancers(69;0.0259)|OV - Ovarian serous cystadenocarcinoma(28;0.0405)			CTCCTTTGGCGATAAAACTAC	0.478													15	49					0	0	0.003163	0	0
NCOA2	10499	broad.mit.edu	37	8	71068277	71068277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:71068277G>A	uc003xyn.1	-	11	2485	c.2323C>T	c.(2323-2325)CCT>TCT	p.P775S		NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	775					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TTACTGGCAGGATCTGTCTTA	0.403			T	RUNXBP2	AML								27	39					0	0	0.005443	0	0
EYA1	2138	broad.mit.edu	37	8	72267115	72267115	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:72267115G>A	uc003xys.3	-	2	313	c.26C>T	c.(25-27)CCG>CTG	p.P9L	EYA1_uc003xyr.3_Missense_Mutation_p.P9L|EYA1_uc003xyt.3_Intron|EYA1_uc010lzf.2_5'UTR|EYA1_uc003xyu.2_Missense_Mutation_p.P9L|EYA1_uc011lfe.1_Missense_Mutation_p.P9L|EYA1_uc003xyv.2_5'UTR	NM_172058	NP_742055	Q99502	EYA1_HUMAN	eyes absent 1 isoform b	9					double-strand break repair|histone dephosphorylation|positive regulation of DNA repair|protein sumoylation|regulation of transcription, DNA-dependent|response to ionizing radiation|sensory perception of sound|transcription, DNA-dependent	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	5	Breast(64;0.046)		Epithelial(68;0.0837)|all cancers(69;0.247)			ACGGCTATGCGGGCTGGTTAG	0.453													54	83					0	0	0.003610	0	0
ZFHX4	79776	broad.mit.edu	37	8	77618201	77618201	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:77618201G>T	uc003yav.2	+	2	2265	c.1878G>T	c.(1876-1878)AGG>AGT	p.R626S	ZFHX4_uc003yat.1_Missense_Mutation_p.R626S|ZFHX4_uc003yau.1_Missense_Mutation_p.R626S|ZFHX4_uc003yaw.1_Missense_Mutation_p.R626S	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	626	C2H2-type 1.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGTCTTCGAGGTCTCTTGGTG	0.532										HNSCC(33;0.089)			14	20					7.93312e-07	1.11489e-06	0.002450	1	0
ZFHX4	79776	broad.mit.edu	37	8	77766226	77766226	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:77766226G>A	uc003yav.2	+	10	7321	c.6934G>A	c.(6934-6936)GAT>AAT	p.D2312N	ZFHX4_uc003yau.1_Missense_Mutation_p.D2357N|ZFHX4_uc003yaw.1_Missense_Mutation_p.D2312N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2312						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GGATGCCACTGATCAAGTGGT	0.488										HNSCC(33;0.089)			75	84					0	0	0.003610	0	0
ZFHX4	79776	broad.mit.edu	37	8	77768291	77768292	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:77768291_77768292GG>AA	uc003yav.2	+	10	9386_9387	c.8999_9000GG>AA	c.(8998-9000)CGG>CAA	p.R3000Q	ZFHX4_uc003yau.1_Missense_Mutation_p.R3045Q|ZFHX4_uc003yaw.1_Missense_Mutation_p.R3000Q	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	3000						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CAGCTCGATCGGGAGAAAGATT	0.515										HNSCC(33;0.089)			16	41					0	0	0.004672	0	0
Unknown	0	broad.mit.edu	37	8	86567384	86567384	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:86567384G>C	uc003ydl.1	-	1	522	c.435C>G	c.(433-435)TAC>TAG	p.Y145*		NM_172239	NP_758439			exonuclease GOR																		AGTCCAAGGCGTAGATTCCTG	0.592													11	89					0	0	0.001855	0	0
SLC7A13	157724	broad.mit.edu	37	8	87242269	87242269	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:87242269G>A	uc003ydq.1	-	1	336	c.238C>T	c.(238-240)CAA>TAA	p.Q80*	SLC7A13_uc003ydr.1_Nonsense_Mutation_p.Q80*	NM_138817	NP_620172	Q8TCU3	S7A13_HUMAN	solute carrier family 7, (cationic amino acid	80	Cytoplasmic (Potential).					integral to membrane	amino acid transmembrane transporter activity			central_nervous_system(1)	1						AAATAGTATTGAGCTCCACTG	0.493													12	19					0	0	0.000978	0	0
DCAF4L2	138009	broad.mit.edu	37	8	88885780	88885780	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:88885780G>A	uc003ydz.2	-	1	517	c.420C>T	c.(418-420)TCC>TCT	p.S140S		NM_152418	NP_689631	Q8NA75	DC4L2_HUMAN	WD repeat domain 21C	140										ovary(1)	1						GCAGAAGGTGGGAATCCAAGT	0.562													22	20					0	0	0.001882	0	0
CALB1	793	broad.mit.edu	37	8	91081394	91081394	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:91081394C>T	uc003yel.1	-	4	485	c.303G>A	c.(301-303)GAG>GAA	p.E101E	CALB1_uc011lge.1_Silent_p.E44E	NM_004929	NP_004920	P05937	CALB1_HUMAN	calbindin 1	101	EF-hand 3.					nucleus	calcium ion binding|vitamin D binding			pancreas(1)	1			BRCA - Breast invasive adenocarcinoma(11;0.00953)			TCATGAATTCCTCACAGGACT	0.388													10	56					0	0	0.008291	0	0
KIAA1429	25962	broad.mit.edu	37	8	95530059	95530059	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:95530059G>A	uc003ygo.1	-	10	2638	c.2625C>T	c.(2623-2625)CTC>CTT	p.L875L	KIAA1429_uc003ygp.2_Silent_p.L875L|KIAA1429_uc010maz.1_RNA	NM_015496	NP_056311	Q69YN4	VIR_HUMAN	hypothetical protein LOC25962 isoform 1	875					mRNA processing|RNA splicing	nucleus				ovary(1)|skin(1)	2	Breast(36;3.29e-05)		BRCA - Breast invasive adenocarcinoma(8;0.00185)			AAAGCTTCAAGAGAGATGCTG	0.343													11	11					0	0	0.000978	0	0
PGCP	10404	broad.mit.edu	37	8	98155407	98155407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:98155407C>T	uc003yhw.2	+	8	1581	c.1415C>T	c.(1414-1416)TCC>TTC	p.S472F		NM_016134	NP_057218	Q9Y646	PGCP_HUMAN	plasma glutamate carboxypeptidase precursor	472					peptide metabolic process|proteolysis	cytoplasm|extracellular space	metal ion binding|metallocarboxypeptidase activity			upper_aerodigestive_tract(1)	1	Breast(36;1.86e-05)					CTGCCTAGGTCCTAGAAACAG	0.428													10	54					0	0	0.008291	0	0
POP1	10940	broad.mit.edu	37	8	99146750	99146750	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:99146750C>T	uc003yij.3	+	7	974	c.874C>T	c.(874-876)CTT>TTT	p.L292F	POP1_uc011lgv.1_Missense_Mutation_p.L292F|POP1_uc003yik.2_Missense_Mutation_p.L292F	NM_001145860	NP_001139332	Q99575	POP1_HUMAN	processing of precursor 1	292					tRNA 5'-leader removal|tRNA catabolic process	nucleolar ribonuclease P complex|ribonuclease MRP complex	identical protein binding|ribonuclease MRP activity|ribonuclease P activity			ovary(1)|breast(1)	2	Breast(36;1.78e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.145)			CCAAGGGAGCCTTGTGCTTTA	0.502													14	50					0	0	0.004990	0	0
RGS22	26166	broad.mit.edu	37	8	101014555	101014555	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:101014555G>A	uc003yjb.1	-	18	2860	c.2665C>T	c.(2665-2667)CGG>TGG	p.R889W	RGS22_uc003yja.1_Missense_Mutation_p.R708W|RGS22_uc003yjc.1_Missense_Mutation_p.R877W|RGS22_uc011lgz.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	889	RGS 1.				negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			GTTATTCTCCGGAACTGCTCA	0.318													21	29					0	0	0.002780	0	0
FBXO43	286151	broad.mit.edu	37	8	101146277	101146277	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:101146277A>G	uc003yjd.2	-	5	2593	c.1880T>C	c.(1879-1881)GTT>GCT	p.V627A	FBXO43_uc003yje.2_Missense_Mutation_p.V593A	NM_001029860	NP_001025031	Q4G163	FBX43_HUMAN	F-box protein 43 isoform b	627	IBR-type.				meiosis		zinc ion binding			kidney(1)|skin(1)	2	all_cancers(14;0.000139)|all_epithelial(15;2.84e-07)|Lung NSC(17;0.000274)|all_lung(17;0.000798)		Epithelial(11;1.17e-09)|all cancers(13;1.34e-07)|OV - Ovarian serous cystadenocarcinoma(57;3.82e-05)|STAD - Stomach adenocarcinoma(118;0.0957)			TGTTTTGGCAACCTGCAGTGA	0.383													13	58					0	0	0.002450	0	0
UBR5	51366	broad.mit.edu	37	8	103359165	103359165	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:103359165G>A	uc003ykr.1	-	6	575	c.542C>T	c.(541-543)CCA>CTA	p.P181L	UBR5_uc003yks.1_Missense_Mutation_p.P181L	NM_015902	NP_056986	O95071	UBR5_HUMAN	ubiquitin protein ligase E3 component n-recognin	181					cell proliferation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of catenin import into nucleus|positive regulation of protein import into nucleus, translocation|progesterone receptor signaling pathway|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to DNA damage stimulus	nucleus|soluble fraction	protein binding|RNA binding|ubiquitin-ubiquitin ligase activity|zinc ion binding			lung(16)|ovary(4)|large_intestine(3)|breast(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	28	all_cancers(14;8e-07)|all_epithelial(15;2.18e-08)|Lung NSC(17;2.55e-05)|all_lung(17;8.85e-05)		OV - Ovarian serous cystadenocarcinoma(57;0.000442)			GACAGATGCTGGAATAACTGG	0.517													37	35					0	0	0.006230	0	0
RIMS2	9699	broad.mit.edu	37	8	104948865	104948865	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:104948865G>A	uc003yls.2	+	11	2037	c.1796G>A	c.(1795-1797)CGA>CAA	p.R599Q	RIMS2_uc003ylp.2_Missense_Mutation_p.R821Q|RIMS2_uc003ylw.2_Missense_Mutation_p.R613Q|RIMS2_uc003ylq.2_Missense_Mutation_p.R613Q|RIMS2_uc003ylr.2_Missense_Mutation_p.R660Q|RIMS2_uc003ylt.2_Missense_Mutation_p.R206Q	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	883	C2 1.				intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CCAGTCCACCGAAGAGAATTT	0.388										HNSCC(12;0.0054)			34	46					0	0	0.003271	0	0
ANGPT1	284	broad.mit.edu	37	8	108306214	108306214	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:108306214G>A	uc003ymn.2	-	6	1456	c.988C>T	c.(988-990)CGT>TGT	p.R330C	ANGPT1_uc011lhv.1_Missense_Mutation_p.R130C|ANGPT1_uc003ymo.2_Missense_Mutation_p.R329C|ANGPT1_uc003ymp.3_Missense_Mutation_p.R129C	NM_001146	NP_001137	Q15389	ANGP1_HUMAN	angiopoietin 1 precursor	330	Fibrinogen C-terminal.				activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|blood coagulation|cell differentiation|heparin biosynthetic process|leukocyte migration|negative regulation of cell adhesion|negative regulation of endothelial cell apoptosis|negative regulation of vascular permeability|positive chemotaxis|positive regulation of blood vessel endothelial cell migration|positive regulation of ERK1 and ERK2 cascade|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|positive regulation of receptor internalization|protein localization at cell surface|regulation of satellite cell proliferation|sprouting angiogenesis|Tie receptor signaling pathway	extracellular space|membrane raft|microvillus|plasma membrane	receptor tyrosine kinase binding			ovary(3)|skin(3)|upper_aerodigestive_tract(1)	7	Breast(1;5.06e-08)		OV - Ovarian serous cystadenocarcinoma(57;5.53e-09)			CCATCTTCACGATGTTGTATT	0.338													17	61					0	0	0.006122	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110431354	110431354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:110431354G>A	uc003yne.2	+	22	2493	c.2389G>A	c.(2389-2391)GAT>AAT	p.D797N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	797	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGACCTTCTGGATCTCGTAAG	0.363										HNSCC(38;0.096)			15	58					0	0	0.004007	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110456925	110456925	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:110456925A>T	uc003yne.2	+	38	4931	c.4827A>T	c.(4825-4827)GAA>GAT	p.E1609D		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1609	Extracellular (Potential).|IPT/TIG 8.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TCGTAGAAGAAAGTAGTGAGG	0.368										HNSCC(38;0.096)			94	119					0	0	0.003610	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110477210	110477210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:110477210G>A	uc003yne.2	+	49	8253	c.8149G>A	c.(8149-8151)GGA>AGA	p.G2717R		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	2717	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			TGATGAACTGGGAATGGGGTC	0.473										HNSCC(38;0.096)			18	74					0	0	0.001523	0	0
KCNV1	27012	broad.mit.edu	37	8	110984918	110984918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:110984918C>T	uc003ynr.3	-	2	902	c.560G>A	c.(559-561)GGA>GAA	p.G187E	KCNV1_uc010mcw.2_Missense_Mutation_p.G187E	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	187	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			GGGACAAGGTCCTTGGGAGAA	0.473													29	55					0	0	0.006320	0	0
CSMD3	114788	broad.mit.edu	37	8	113326686	113326686	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:113326686C>T	uc003ynu.2	-	48	7680	c.7521G>A	c.(7519-7521)AAG>AAA	p.K2507K	CSMD3_uc003yns.2_Silent_p.K1709K|CSMD3_uc003ynt.2_Silent_p.K2467K|CSMD3_uc011lhx.1_Silent_p.K2403K|CSMD3_uc003ynw.1_Silent_p.K218K	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2507	CUB 14.|Extracellular (Potential).					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CATCAAATTCCTTTTCTGTCT	0.328										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			16	35					0	0	0.007413	0	0
CSMD3	114788	broad.mit.edu	37	8	113841920	113841920	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:113841920G>A	uc003ynu.2	-	12	2013	c.1854C>T	c.(1852-1854)CTC>CTT	p.L618L	CSMD3_uc003ynt.2_Silent_p.L578L|CSMD3_uc011lhx.1_Silent_p.L514L	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	618	Extracellular (Potential).|CUB 3.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						CTTACACTTGGAGCACTGTCC	0.383										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	18					0	0	0.000978	0	0
COLEC10	10584	broad.mit.edu	37	8	120118306	120118306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:120118306G>A	uc003yoo.2	+	6	807	c.710G>A	c.(709-711)GGG>GAG	p.G237E		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	237	C-type lectin.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			TGGAATGAGGGGGAACCCAGC	0.498													13	36					0	0	0.001855	0	0
COL14A1	7373	broad.mit.edu	37	8	121379423	121379423	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:121379423C>T	uc003yox.2	+	46	5356	c.5091C>T	c.(5089-5091)ATC>ATT	p.I1697I	COL14A1_uc003yoz.2_Silent_p.I662I	NM_021110	NP_066933	Q05707	COEA1_HUMAN	collagen, type XIV, alpha 1 precursor	1697	Triple-helical region 2 (COL1).				cell-cell adhesion|collagen fibril organization	collagen type XIV|extracellular space	collagen binding|extracellular matrix structural constituent|protein binding, bridging			ovary(4)|kidney(4)|skin(2)|pancreas(1)|central_nervous_system(1)	12	Lung NSC(37;6.52e-07)|Ovarian(258;0.00769)|Hepatocellular(40;0.161)		OV - Ovarian serous cystadenocarcinoma(1;6.47e-38)|STAD - Stomach adenocarcinoma(47;0.00503)			TAACTGGTATCAAAGGAGAAA	0.378													19	19					0	0	0.008871	0	0
MTBP	27085	broad.mit.edu	37	8	121509778	121509778	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:121509778C>T	uc003ypc.1	+	14	1638	c.1593C>T	c.(1591-1593)ACC>ACT	p.T531T		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	531	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			AAATTAAAACCTTCAATATAT	0.259													9	19					0	0	0.004482	0	0
MTBP	27085	broad.mit.edu	37	8	121519043	121519043	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:121519043T>C	uc003ypc.1	+	16	1870	c.1825T>C	c.(1825-1827)TAC>CAC	p.Y609H		NM_022045	NP_071328	Q96DY7	MTBP_HUMAN	Mdm2, transformed 3T3 cell double minute 2, p53	609	Interaction with MDM2 (By similarity).				cell cycle arrest					skin(2)|ovary(1)	3	Lung NSC(37;5.68e-08)|Ovarian(258;0.00769)|all_neural(195;0.0804)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00503)			ATTGCTGAAGTACTTTACCTC	0.388													19	21					0	0	0.001882	0	0
KLHL38	340359	broad.mit.edu	37	8	124659207	124659207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:124659207C>T	uc003yqs.1	-	2	1422	c.1398G>A	c.(1396-1398)ATG>ATA	p.M466I		NM_001081675	NP_001075144	Q2WGJ6	KLH38_HUMAN	kelch-like 38	466	Kelch 4.										0						CGTTCTTGATCATTCTTGTCT	0.463													72	79					0	0	0.003610	0	0
FER1L6	654463	broad.mit.edu	37	8	125094552	125094552	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:125094552T>C	uc003yqw.2	+	33	4450	c.4244T>C	c.(4243-4245)TTC>TCC	p.F1415S	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1415	C2 5.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CAAGCCACATTCCCAAAAGAG	0.483													36	62					0	0	0.006999	0	0
ADCY8	114	broad.mit.edu	37	8	131848633	131848633	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:131848633G>A	uc003ytd.3	-	12	2821	c.2565C>T	c.(2563-2565)TCC>TCT	p.S855S	ADCY8_uc010mds.2_Silent_p.S724S	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	855					activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GCTTCAGGACGGAGTTCAGCC	0.537										HNSCC(32;0.087)			15	44					0	0	0.004007	0	0
KCNQ3	3786	broad.mit.edu	37	8	133141656	133141656	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:133141656C>T	uc003ytj.2	-	15	2697	c.2472G>A	c.(2470-2472)TCG>TCA	p.S824S	KCNQ3_uc010mdt.2_Silent_p.S812S|uc003yti.2_5'Flank	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	824					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			TCATCCAGCTCGACCCCCCAT	0.622													6	12					0	0	0.001984	0	0
KCNQ3	3786	broad.mit.edu	37	8	133142162	133142163	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:133142162_133142163CC>TT	uc003ytj.2	-	15	2190_2191	c.1965_1966GG>AA	c.(1963-1968)ACGGAG>ACAAAG	p.E656K	KCNQ3_uc010mdt.2_Missense_Mutation_p.E644K	NM_004519	NP_004510	O43525	KCNQ3_HUMAN	potassium voltage-gated channel KQT-like protein	656					axon guidance|synaptic transmission	voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Esophageal squamous(12;0.00507)|Ovarian(258;0.00579)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000311)			GGGTAATACTCCGTGACCTGCA	0.5													23	64					0	0	0.004672	0	0
ZFAT	57623	broad.mit.edu	37	8	135649862	135649863	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:135649862_135649863GG>AA	uc003yup.2	-	3	464_465	c.289_290CC>TT	c.(289-291)CCG>TTG	p.P97L	ZFAT_uc003yun.2_Missense_Mutation_p.P85L|ZFAT_uc003yuo.2_Missense_Mutation_p.P85L|ZFAT_uc010meh.2_Missense_Mutation_p.P85L|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Missense_Mutation_p.P85L|ZFAT_uc010mej.2_Missense_Mutation_p.P97L|ZFAT_uc003yur.2_Missense_Mutation_p.P85L	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	97					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			GTCCTCAGTCGGACTCACGATG	0.569													21	29					0	0	0.004672	0	0
FAM135B	51059	broad.mit.edu	37	8	139155261	139155261	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:139155261C>T	uc003yuy.2	-	16	3803	c.3632G>A	c.(3631-3633)CGA>CAA	p.R1211Q	FAM135B_uc003yux.2_Missense_Mutation_p.R1112Q|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Missense_Mutation_p.R773Q|FAM135B_uc003yvb.2_3'UTR	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	1211										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			TTACCTAATTCGGGATATGGA	0.393										HNSCC(54;0.14)			15	19					0	0	0.004990	0	0
FAM135B	51059	broad.mit.edu	37	8	139165086	139165086	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:139165086C>T	uc003yuy.2	-	13	1803	c.1632G>A	c.(1630-1632)GAG>GAA	p.E544E	FAM135B_uc003yux.2_Silent_p.E445E|FAM135B_uc003yuz.2_RNA|FAM135B_uc003yva.2_Silent_p.E106E|FAM135B_uc003yvb.2_Silent_p.E106E	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	544										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			CCTGTCCATCCTCTGGACCTG	0.512										HNSCC(54;0.14)			27	26					0	0	0.005443	0	0
COL22A1	169044	broad.mit.edu	37	8	139790603	139790604	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:139790603_139790604CC>TT	uc003yvd.2	-	15	2197_2198	c.1750_1751GG>AA	c.(1750-1752)GGA>AAA	p.G584K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	584	Pro-rich.|Gly-rich.|Collagen-like 3.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TACAGGAGCTCCGACACGTCCA	0.535										HNSCC(7;0.00092)			13	17					0	0	0.004672	0	0
SLURP1	57152	broad.mit.edu	37	8	143822646	143822646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:143822646G>A	uc003ywy.2	-	3	253	c.227C>T	c.(226-228)TCC>TTC	p.S76F		NM_020427	NP_065160	P55000	SLUR1_HUMAN	ARS component B precursor	76					cell activation|cell adhesion	extracellular space	cytokine activity				0	all_cancers(97;3.96e-12)|all_epithelial(106;1.19e-08)|Lung NSC(106;0.000413)|all_lung(105;0.00106)|Medulloblastoma(13;0.00276)|all_neural(13;0.00559)|Ovarian(258;0.0254)|Acute lymphoblastic leukemia(118;0.155)					GGCCACACAGGAGCTGGAGCA	0.667													4	8					0	0	0.000248	0	0
TOP1MT	116447	broad.mit.edu	37	8	144399903	144399903	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:144399903G>A	uc003yxz.2	-	10	1339	c.1320C>T	c.(1318-1320)GCC>GCT	p.A440A	TOP1MT_uc011lkd.1_Silent_p.A342A|TOP1MT_uc011lke.1_Silent_p.A342A|TOP1MT_uc010mfb.2_Silent_p.A342A|TOP1MT_uc011lkf.1_Silent_p.A235A	NM_052963	NP_443195	Q969P6	TOP1M_HUMAN	mitochondrial topoisomerase I precursor	440					DNA topological change	chromosome|mitochondrial nucleoid	ATP binding|chromatin DNA binding|DNA topoisomerase (ATP-hydrolyzing) activity|DNA topoisomerase type I activity			ovary(1)	1	all_cancers(97;1.01e-10)|all_epithelial(106;4.86e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.156)|Colorectal(110;0.173)		Irinotecan(DB00762)|Topotecan(DB01030)	CGCGCGTCAGGGCCCGCAGCT	0.697													7	14					0	0	0.008291	0	0
FAM83H	286077	broad.mit.edu	37	8	144809125	144809125	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:144809125G>A	uc003yzk.2	-	5	2575	c.2506C>T	c.(2506-2508)CTC>TTC	p.L836F	FAM83H_uc010mfk.1_RNA	NM_198488	NP_940890	Q6ZRV2	FA83H_HUMAN	FAM83H	836					biomineral tissue development					lung(1)|central_nervous_system(1)|pancreas(1)	3	all_cancers(97;3.74e-11)|all_epithelial(106;2.62e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.38e-41)|Epithelial(56;6.8e-40)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.146)			TGGGCAGAGAGGAAGCGGGAA	0.701													4	13					0	0	0.000248	0	0
EPPK1	83481	broad.mit.edu	37	8	144946633	144946633	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:144946633C>T	uc003zaa.1	-	1	802	c.789G>A	c.(787-789)GAG>GAA	p.E263E		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	263						cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCAGCCTGCCCTCCCGCAGAC	0.701													3	2					0	0	0.000248	0	0
EPPK1	83481	broad.mit.edu	37	8	144947143	144947143	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:144947143G>A	uc003zaa.1	-	1	292	c.279C>T	c.(277-279)CTC>CTT	p.L93L		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	93	Plectin 2.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			TGGACACAGGGAGCAGCTGGC	0.701													6	4					0	0	0.001984	0	0
PARP10	84875	broad.mit.edu	37	8	145058972	145058973	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:145058972_145058973GG>AA	uc003zal.3	-	5	1305_1306	c.1197_1198CC>TT	c.(1195-1200)GGCCTG>GGTTTG	p.399_400GL>GL	PARP10_uc003zak.3_Silent_p.105_106GL>GL|PARP10_uc011lku.1_Silent_p.411_412GL>GL|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Silent_p.399_400GL>GL|PARP10_uc010mfn.1_Silent_p.314_315GL>GL|PARP10_uc010mfo.1_3'UTR	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	399_400						Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			ATTTCCACCAGGCCCTCCTGCC	0.653													38	33					0	0	0.004672	0	0
PARP10	84875	broad.mit.edu	37	8	145059330	145059331	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:145059330_145059331GG>AA	uc003zal.3	-	5	947_948	c.839_840CC>TT	c.(838-840)ACC>ATT	p.T280I	PARP10_uc003zak.3_5'UTR|PARP10_uc011lku.1_Missense_Mutation_p.T292I|PARP10_uc011lkv.1_RNA|PARP10_uc003zam.2_Missense_Mutation_p.T280I|PARP10_uc010mfn.1_Missense_Mutation_p.T195I|PARP10_uc010mfo.1_3'UTR	NM_032789	NP_116178	Q53GL7	PAR10_HUMAN	poly (ADP-ribose) polymerase family, member 10	280						Golgi apparatus|nucleolus	NAD+ ADP-ribosyltransferase activity|nucleotide binding			ovary(2)|upper_aerodigestive_tract(1)|lung(1)|breast(1)|pancreas(1)	6	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.31e-40)|Epithelial(56;1.16e-39)|all cancers(56;6.43e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCAACCCTCCGGTCCTCAGGAG	0.629													21	27					0	0	0.004672	0	0
OPLAH	26873	broad.mit.edu	37	8	145111541	145111541	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:145111541G>A	uc003zar.3	-	13	1906	c.1824C>T	c.(1822-1824)TTC>TTT	p.F608F	OPLAH_uc003zas.1_5'Flank	NM_017570	NP_060040	O14841	OPLA_HUMAN	5-oxoprolinase (ATP-hydrolysing)	608							5-oxoprolinase (ATP-hydrolyzing) activity|ATP binding				0	all_cancers(97;1.06e-10)|all_epithelial(106;1.5e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;2.24e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)		L-Glutamic Acid(DB00142)	AGGCTGCCCCGAAGTCCCCCG	0.677													15	5					0	0	0.004990	0	0
HSF1	3297	broad.mit.edu	37	8	145535756	145535756	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:145535756C>T	uc003zbt.3	+	9	1138	c.968C>T	c.(967-969)ACC>ATC	p.T323I	HSF1_uc003zbu.3_RNA	NM_005526	NP_005517	Q00613	HSF1_HUMAN	heat shock transcription factor 1	323						cytoplasm	protein binding|sequence-specific DNA binding transcription factor activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;3.94e-40)|Epithelial(56;1.12e-39)|all cancers(56;9.11e-35)|BRCA - Breast invasive adenocarcinoma(115;0.0547)|Colorectal(110;0.055)			TCCGTGGACACCCTCTTGTCC	0.706													4	9					0	0	0.000248	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145773447	145773447	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr8:145773447C>T	uc003zdt.1	-	6	1578	c.1023G>A	c.(1021-1023)CAG>CAA	p.Q341Q	ARHGAP39_uc011llk.1_Silent_p.Q341Q|ARHGAP39_uc003zds.1_Silent_p.Q341Q	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	341	Pro-rich.				axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						GAGAGCCGGCCTGGTAGCCCC	0.701													9	11					0	0	0.004482	0	0
FOXD4	2298	broad.mit.edu	37	9	117901	117901	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:117901G>A	uc003zfz.2	-	1	517	c.219C>T	c.(217-219)GGC>GGT	p.G73G		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	73					axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		TCGGGCCGCCGCCGCCCTCGA	0.721													25	2					0	0	0.002836	0	0
KCNV2	169522	broad.mit.edu	37	9	2718192	2718192	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:2718192C>T	uc003zho.1	+	1	667	c.453C>T	c.(451-453)TTC>TTT	p.F151F		NM_133497	NP_598004	Q8TDN2	KCNV2_HUMAN	potassium channel, subfamily V, member 2	151	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2				GBM - Glioblastoma multiforme(50;0.0257)		AATACTTCTTCGACCGCGACC	0.652													8	1					0	0	0.006214	0	0
PTPRD	5789	broad.mit.edu	37	9	8317885	8317885	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:8317885A>T	uc003zkk.2	-	45	6439	c.5728T>A	c.(5728-5730)TAT>AAT	p.Y1910N	PTPRD_uc003zkp.2_Missense_Mutation_p.Y1504N|PTPRD_uc003zkq.2_Missense_Mutation_p.Y1503N|PTPRD_uc003zkr.2_Missense_Mutation_p.Y1494N|PTPRD_uc003zks.2_Missense_Mutation_p.Y1503N|PTPRD_uc003zkl.2_Missense_Mutation_p.Y1901N|PTPRD_uc003zkm.2_Missense_Mutation_p.Y1897N|PTPRD_uc003zkn.2_Missense_Mutation_p.Y1499N|PTPRD_uc003zko.2_Missense_Mutation_p.Y1500N	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	1910	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TACGTTGCATAGTGGTCAAAG	0.478										TSP Lung(15;0.13)			27	32					0	0	0.003271	0	0
FREM1	158326	broad.mit.edu	37	9	14748452	14748452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:14748452C>T	uc003zlm.2	-	31	6333	c.5743G>A	c.(5743-5745)GAT>AAT	p.D1915N	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Missense_Mutation_p.D451N	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1915					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TCTGTAGAATCAAAGCCCCGC	0.468													20	0					0	0	0.007413	0	0
FREM1	158326	broad.mit.edu	37	9	14748456	14748456	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:14748456G>A	uc003zlm.2	-	31	6329	c.5739C>T	c.(5737-5739)GGC>GGT	p.G1913G	FREM1_uc010mic.2_RNA|FREM1_uc003zlk.2_Intron|FREM1_uc003zll.2_Silent_p.G449G	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	1913					cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		TAGAATCAAAGCCCCGCAGGG	0.483													12	10					0	0	0.000978	0	0
FREM1	158326	broad.mit.edu	37	9	14851399	14851399	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:14851399C>T	uc003zlm.2	-	6	1625	c.1035G>A	c.(1033-1035)GTG>GTA	p.V345V	FREM1_uc010mic.2_RNA	NM_144966	NP_659403	Q5H8C1	FREM1_HUMAN	FRAS1 related extracellular matrix 1 precursor	345	CSPG 1.				cell communication|multicellular organismal development	basement membrane|integral to membrane	metal ion binding|sugar binding			ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(50;3.53e-06)		ACAGGTGAGTCACATAGCCCT	0.498													26	2					0	0	0.003954	0	0
ADAMTSL1	92949	broad.mit.edu	37	9	18829843	18829843	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:18829843C>T	uc003zne.3	+	23	4244	c.4117C>T	c.(4117-4119)CCC>TCC	p.P1373S	ADAMTSL1_uc003znf.3_Missense_Mutation_p.P74S	NM_001040272	NP_001035362	Q8N6G6	ATL1_HUMAN	ADAMTS-like 1 isoform 4 precursor	1373						proteinaceous extracellular matrix	metallopeptidase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|lung(1)	5				GBM - Glioblastoma multiforme(50;1.29e-17)		TCTCACAGATCCCCCCCAAGT	0.567													23	3					0	0	0.007291	0	0
IFNA16	3449	broad.mit.edu	37	9	21217191	21217191	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:21217191C>T	uc003zor.1	-	1	120	c.114G>A	c.(112-114)TTG>TTA	p.L38L	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	38					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		CCAGGAGTATCAAGGCCCTCC	0.502													52	7					0	0	0.003610	0	0
ANKRD20A3	441425	broad.mit.edu	37	9	67951980	67951980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:67951980G>A	uc004aeu.2	+	9	1055	c.943G>A	c.(943-945)GAA>AAA	p.E315K	ANKRD20A3_uc010mnn.2_Missense_Mutation_p.E314K	NM_001012419	NP_001012419	Q5VUR7	A20A3_HUMAN	ankyrin repeat domain 20 family, member A3	315											0						ATCTTCGCATGAAAAAGGAAA	0.313													22	131					0	0	0.006230	0	0
Unknown	0	broad.mit.edu	37	9	69067929	69067929	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:69067929G>A	uc004afe.1	+	3		c.744_splice	c.e3+1		uc010mnq.1_Splice_Site					Homo sapiens cDNA, FLJ18209.																		TGATATGTTGGTGAGTCAGTT	0.209													16	39					0	0	0.002299	0	0
CBWD6	644019	broad.mit.edu	37	9	69256871	69256871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:69256871G>A	uc004afj.3	-	3	366	c.260C>T	c.(259-261)TCC>TTC	p.S87F	CBWD6_uc004afk.3_RNA|CBWD6_uc011lrf.1_RNA|CBWD6_uc004afl.3_Missense_Mutation_p.S87F	NM_001085457	NP_001078926	Q4V339	CBWD6_HUMAN	COBW domain containing 6	87							ATP binding				0						GACAGCTAAGGATTTCTCCAG	0.398													75	50					0	0	0.003610	0	0
TRPM3	80036	broad.mit.edu	37	9	73461349	73461349	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:73461349G>A	uc004aid.2	-	4	865	c.621C>T	c.(619-621)CTC>CTT	p.L207L	TRPM3_uc004ahu.2_Silent_p.L37L|TRPM3_uc004ahv.2_Silent_p.L37L|TRPM3_uc004ahw.2_Silent_p.L54L|TRPM3_uc004ahx.2_Silent_p.L54L|TRPM3_uc004ahy.2_Silent_p.L54L|TRPM3_uc004ahz.2_Silent_p.L54L|TRPM3_uc004aia.2_Silent_p.L54L|TRPM3_uc004aib.2_Silent_p.L54L|TRPM3_uc004aic.2_Silent_p.L207L|TRPM3_uc010mor.2_Silent_p.L207L|TRPM3_uc004aie.2_Silent_p.L54L|TRPM3_uc004aif.2_Silent_p.L54L|TRPM3_uc004aig.2_Silent_p.L54L|TRPM3_uc004aii.2_Silent_p.L209L	NM_001007471	NP_001007472	Q9HCF6	TRPM3_HUMAN	transient receptor potential cation channel,	207	Cytoplasmic (Potential).					integral to membrane	calcium channel activity			ovary(3)|pancreas(2)|central_nervous_system(2)|skin(2)	9						CTGCTTTGATGAGCCCTTTCC	0.483													68	89					0	0	0.003610	0	0
GDA	9615	broad.mit.edu	37	9	74838040	74838040	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:74838040C>A	uc004aiq.2	+	7	794	c.611C>A	c.(610-612)TCT>TAT	p.S204Y	GDA_uc011lse.1_Missense_Mutation_p.S130Y|GDA_uc011lsf.1_Missense_Mutation_p.S130Y|GDA_uc004air.2_Missense_Mutation_p.S204Y|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Intron|GDA_uc004ait.1_Missense_Mutation_p.S130Y	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	204					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		CTCCAGTATTCTAGAGTGAAG	0.269													28	47					4.40665e-25	6.24964e-25	0.001786	1	0
TMC1	117531	broad.mit.edu	37	9	75309495	75309495	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:75309495G>A	uc004aiz.1	+	7	641	c.101G>A	c.(100-102)CGA>CAA	p.R34Q	TMC1_uc010moz.1_Missense_Mutation_p.R34Q|TMC1_uc004aja.1_RNA|TMC1_uc004ajb.1_RNA|TMC1_uc004ajc.1_5'UTR|TMC1_uc010mpa.1_5'UTR	NM_138691	NP_619636	Q8TDI8	TMC1_HUMAN	transmembrane channel-like 1	34	Cytoplasmic (Potential).|Arg/Asp/Glu/Lys-rich (highly charged).				sensory perception of sound	integral to membrane				ovary(1)	1						AAGCTACCTCGAAGAGAGAGC	0.448													11	11					0	0	0.001855	0	0
TRPM6	140803	broad.mit.edu	37	9	77377950	77377950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:77377950C>T	uc004ajl.1	-	26	3875	c.3637G>A	c.(3637-3639)GAT>AAT	p.D1213N	TRPM6_uc004ajk.1_Missense_Mutation_p.D1208N|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.D169N	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1213	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GCAGAGAGATCCTGCAGGTGT	0.468													36	26					0	0	0.004289	0	0
PCSK5	5125	broad.mit.edu	37	9	78808217	78808218	+	Missense_Mutation	DNP	AC	TT	TT	rs142979671		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:78808217_78808218AC>TT	uc004ajz.2	+	21	3229_3230	c.2691_2692AC>TT	c.(2689-2694)CAACGG>CATTGG	p.897_898QR>HW	PCSK5_uc004aka.2_RNA|PCSK5_uc004akb.2_Missense_Mutation_p.171_172QR>HW	NM_006200	NP_006191	Q92824	PCSK5_HUMAN	proprotein convertase subtilisin/kexin type 5	897_898	PLAC.				anterior/posterior pattern formation|cell-cell signaling|cytokine biosynthetic process|embryo implantation|embryonic digestive tract development|embryonic skeletal system development|heart development|kidney development|limb morphogenesis|nerve growth factor processing|nerve growth factor receptor signaling pathway|peptide biosynthetic process|renin secretion into blood stream|respiratory tube development|signal peptide processing|viral assembly, maturation, egress, and release	extracellular space|Golgi lumen|stored secretory granule	peptide binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3						ATCTGTGCCAACGGAAGGTTCT	0.431													20	20					0	0	0.004672	0	0
PRUNE2	158471	broad.mit.edu	37	9	79322453	79322453	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:79322453C>T	uc010mpk.2	-	8	4861	c.4737G>A	c.(4735-4737)CAG>CAA	p.Q1579Q		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1579					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTTGGTGATTCTGTTCACTCC	0.408													37	29					0	0	0.004878	0	0
PRUNE2	158471	broad.mit.edu	37	9	79326018	79326018	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:79326018G>A	uc010mpk.2	-	8	1296	c.1172C>T	c.(1171-1173)TCT>TTT	p.S391F		NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	391					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CTCTATGTCAGAACCATACAA	0.512													8	15					0	0	0.006214	0	0
IARS	3376	broad.mit.edu	37	9	95021171	95021171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:95021171G>A	uc004art.1	-	19	2238	c.1981C>T	c.(1981-1983)CGC>TGC	p.R661C	IARS_uc004ars.1_Missense_Mutation_p.R506C|IARS_uc004aru.3_Missense_Mutation_p.R661C|IARS_uc010mqr.2_Missense_Mutation_p.R551C|IARS_uc010mqt.2_Intron	NM_013417	NP_038203	P41252	SYIC_HUMAN	isoleucine tRNA synthetase	661					isoleucyl-tRNA aminoacylation	cytosol|nucleus|soluble fraction	ATP binding|isoleucine-tRNA ligase activity|protein binding			ovary(1)|skin(1)	2					L-Isoleucine(DB00167)	ATTAAGAAGCGATAGGCATTG	0.537													9	11					0	0	0.006214	0	0
IPPK	64768	broad.mit.edu	37	9	95400522	95400522	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:95400522G>A	uc004asl.1	-	9	954	c.677C>T	c.(676-678)CCC>CTC	p.P226L	IPPK_uc004ask.1_5'Flank	NM_022755	NP_073592	Q9H8X2	IPPK_HUMAN	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	226					inositol or phosphatidylinositol phosphorylation	cytoplasm|nucleus	ATP binding|inositol pentakisphosphate 2-kinase activity			ovary(2)	2						GTCAGCCACGGGGCTCCGGGC	0.557													12	36					0	0	0.002450	0	0
BICD2	23299	broad.mit.edu	37	9	95480163	95480163	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:95480163G>A	uc004aso.1	-	6	2231	c.2174C>T	c.(2173-2175)ACC>ATC	p.T725I	BICD2_uc004asp.1_Missense_Mutation_p.T725I	NM_015250	NP_056065	Q8TD16	BICD2_HUMAN	bicaudal D homolog 2 isoform 2	725	Interacts with RAB6A (By similarity).|Potential.				microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule	cytoplasmic vesicle|cytoskeleton|Golgi apparatus|plasma membrane	Rab GTPase binding			skin(1)	1						CTTCATCATGGTCTCGGTAAC	0.562													24	41					0	0	0.003954	0	0
ANKRD19	138649	broad.mit.edu	37	9	95576272	95576272	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:95576272G>A	uc011lua.1	+	3	492	c.438G>A	c.(436-438)GGG>GGA	p.G146G	ANKRD19_uc004ass.2_RNA|ANKRD19_uc004asr.3_RNA					SubName: Full=ANKRD19 protein; SubName: Full=cDNA FLJ77364, highly similar to Homo sapiens ankyrin repeat domain 19 (ANKRD19), mRNA; SubName: Full=Ankyrin repeat domain 19, isoform CRA_a;												0						ATAATAAGGGGACTTCACTGG	0.393													18	18					0	0	0.004990	0	0
FAM120A	23196	broad.mit.edu	37	9	96320190	96320190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:96320190C>T	uc004atw.2	+	14	2591	c.2566C>T	c.(2566-2568)CCT>TCT	p.P856S	FAM120A_uc004aty.2_Missense_Mutation_p.P637S|FAM120A_uc004atz.2_Missense_Mutation_p.P505S|FAM120A_uc010mrg.2_Missense_Mutation_p.P169S	NM_014612	NP_055427	Q9NZB2	F120A_HUMAN	oxidative stress-associated Src activator	856	RNA binding.					cytoplasm|plasma membrane	RNA binding				0						CCACACGCTCCCTTTCCCGCC	0.657													10	13					0	0	0.006214	0	0
MIRLET7F1	406888	broad.mit.edu	37	9	96938675	96938675	+	RNA	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:96938675C>T	hsa-let-7f-1|MI0000067	+			c.47C>T			uc004auj.2_RNA|uc004aul.1_5'Flank|MIRLET7D_hsa-let-7d|MI0000065_5'Flank																	0						GTGATTTTACCCTGTTCAGGA	0.338													14	9					0	0	0.001855	0	0
MURC	347273	broad.mit.edu	37	9	103348047	103348047	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:103348047G>A	uc004bba.2	+	2	499	c.409G>A	c.(409-411)GAG>AAG	p.E137K		NM_001018116	NP_001018126	Q5BKX8	MURC_HUMAN	muscle-related coiled-coil protein	137					cell differentiation|muscle organ development|transcription, DNA-dependent					ovary(1)	1		Acute lymphoblastic leukemia(62;0.0461)				TCTCCTTCAGGAGAAGTTTCG	0.328													6	14					0	0	0.001984	0	0
OR13C4	138804	broad.mit.edu	37	9	107289476	107289476	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:107289476G>A	uc011lvn.1	-	1	15	c.15C>T	c.(13-15)AAC>AAT	p.N5N		NM_001001919	NP_001001919	Q8NGS5	O13C4_HUMAN	olfactory receptor, family 13, subfamily C,	5	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CAAATGTCTGGTTTATCTTGT	0.368													15	39					0	0	0.004007	0	0
OR13C2	392376	broad.mit.edu	37	9	107367878	107367878	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:107367878C>T	uc011lvq.1	-	1	31	c.31G>A	c.(31-33)GAA>AAA	p.E11K		NM_001004481	NP_001004481	Q8NGS9	O13C2_HUMAN	olfactory receptor, family 13, subfamily C,	11	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						AGAAAAAATTCCACCAGAATG	0.373													24	25					0	0	0.005443	0	0
EPB41L4B	54566	broad.mit.edu	37	9	111979347	111979347	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:111979347G>A	uc004bdz.1	-	16	1783	c.1488C>T	c.(1486-1488)TTC>TTT	p.F496F		NM_019114	NP_061987	Q9H329	E41LB_HUMAN	erythrocyte membrane protein band 4.1 like 4B	496						cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|structural constituent of cytoskeleton			ovary(1)|central_nervous_system(1)|skin(1)	3						CTGCGGTGAGGAACGGTGTGC	0.453													18	12					0	0	0.006122	0	0
PALM2-AKAP2	445815	broad.mit.edu	37	9	112898773	112898773	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:112898773C>T	uc004bei.2	+	9	1837	c.1645C>T	c.(1645-1647)CTG>TTG	p.L549L	PALM2-AKAP2_uc004bek.3_Silent_p.L317L|PALM2-AKAP2_uc004bej.3_Silent_p.L317L|PALM2-AKAP2_uc004bel.1_Silent_p.L127L|AKAP2_uc011lwi.1_Silent_p.L175L|AKAP2_uc004bem.2_Silent_p.L175L|PALM2-AKAP2_uc010mtw.1_Silent_p.L135L|AKAP2_uc011lwj.1_Silent_p.L86L|PALM2-AKAP2_uc004ben.2_Silent_p.L86L	NM_001136562	NP_001130034	Q9Y2D5	AKAP2_HUMAN	A kinase (PRKA) anchor protein 2 isoform 2	86							enzyme binding			ovary(3)|central_nervous_system(2)|skin(1)	6						TGCAGTGGTTCTGGTGGGCGG	0.582													27	28					0	0	0.006320	0	0
SVEP1	79987	broad.mit.edu	37	9	113228143	113228143	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:113228143A>G	uc010mtz.2	-	18	3659	c.3322_splice	c.e18+1	p.V1108_splice	SVEP1_uc010mua.1_Splice_Site_p.V1108_splice	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom						cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GGCTTTGATAACCTCCACATG	0.418													9	17					0	0	0.004482	0	0
KIF12	113220	broad.mit.edu	37	9	116857371	116857371	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:116857371C>T	uc004bif.2	-	8	875	c.637G>A	c.(637-639)GAG>AAG	p.E213K	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	346					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CTGAGAGTCTCAGGAAGGCAC	0.647													10	23					0	0	0.006214	0	0
KIF12	113220	broad.mit.edu	37	9	116857589	116857589	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:116857589C>T	uc004bif.2	-	7	743	c.505G>A	c.(505-507)GAC>AAC	p.D169N	KIF12_uc004big.2_RNA	NM_138424	NP_612433	Q96FN5	KIF12_HUMAN	kinesin family member 12	302					microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity				0						CGCTGTGGGTCCAGCAGCAGG	0.413													13	10					0	0	0.001855	0	0
COL27A1	85301	broad.mit.edu	37	9	116958288	116958288	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:116958288G>A	uc011lxl.1	+	7	2120	c.2120G>A	c.(2119-2121)CGA>CAA	p.R707Q	COL27A1_uc004bii.2_RNA|COL27A1_uc010mvd.1_Missense_Mutation_p.R539Q	NM_032888	NP_116277	Q8IZC6	CORA1_HUMAN	collagen, type XXVII, alpha 1 precursor	707	Collagen-like 2.|Pro-rich.|Triple-helical region.				cell adhesion		extracellular matrix structural constituent			ovary(3)|skin(1)	4						CCTCCGGGACGAAAGGTACTG	0.597													22	51					0	0	0.003330	0	0
DFNB31	25861	broad.mit.edu	37	9	117168646	117168646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:117168646G>A	uc004biz.3	-	9	2874	c.2225C>T	c.(2224-2226)CCC>CTC	p.P742L	DFNB31_uc004bix.2_Missense_Mutation_p.P391L|DFNB31_uc004biy.3_Missense_Mutation_p.P359L|DFNB31_uc004bja.3_Missense_Mutation_p.P742L	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1	742					inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						GCGCGTCTGGGGCAGCGCCCT	0.617													21	45					0	0	0.002780	0	0
PAPPA	5069	broad.mit.edu	37	9	119097311	119097311	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:119097311G>A	uc004bjn.2	+	13	3950	c.3569G>A	c.(3568-3570)AGC>AAC	p.S1190N	PAPPA_uc011lxp.1_Missense_Mutation_p.S885N|PAPPA_uc011lxq.1_Missense_Mutation_p.S565N	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1190					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GTCACCCTGAGCAGCTGCCAG	0.637													10	50					0	0	0.000978	0	0
PAPPA	5069	broad.mit.edu	37	9	119115177	119115177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:119115177C>T	uc004bjn.2	+	16	4538	c.4157C>T	c.(4156-4158)TCC>TTC	p.S1386F	PAPPA_uc011lxq.1_Missense_Mutation_p.S761F	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1386	Sushi 3.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						GTGCCTGGATCCTCTCGGAAG	0.517													8	9					0	0	0.004482	0	0
TRIM32	22954	broad.mit.edu	37	9	119461313	119461313	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:119461313C>T	uc004bjx.2	+	2	1450	c.1292C>T	c.(1291-1293)CCT>CTT	p.P431L	ASTN2_uc004bjr.1_Intron|ASTN2_uc004bjs.1_Intron|ASTN2_uc004bjt.1_Intron|TRIM32_uc004bjw.2_Missense_Mutation_p.P431L	NM_001099679	NP_001093149	Q13049	TRI32_HUMAN	tripartite motif-containing 32	431	NHL 2.				fat cell differentiation|innate immune response|negative regulation of apoptosis|negative regulation of fibroblast proliferation|positive regulation of cell cycle|positive regulation of cell growth|positive regulation of cell migration|positive regulation of neurogenesis|positive regulation of neuron differentiation|positive regulation of NF-kappaB transcription factor activity|positive regulation of protein catabolic process|positive regulation of proteolysis|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|response to tumor necrosis factor|response to UV	nucleus	myosin binding|protein self-association|RNA binding|Tat protein binding|transcription coactivator activity|translation initiation factor binding|ubiquitin binding|ubiquitin-protein ligase activity|zinc ion binding			central_nervous_system(2)|kidney(1)	3						AACCTCACTCCTCTCTCAGTG	0.522									Bardet-Biedl_syndrome				89	81					0	0	0.003610	0	0
TLR4	7099	broad.mit.edu	37	9	120475240	120475240	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:120475240G>A	uc004bjz.2	+	3	1125	c.834G>A	c.(832-834)GAG>GAA	p.E278E	TLR4_uc004bka.2_Silent_p.E238E|TLR4_uc004bkb.2_Silent_p.E78E	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	278	Extracellular (Potential).				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						CTGCTCTAGAGGGCCTGTGCA	0.363													51	54					0	0	0.003610	0	0
DBC1	1620	broad.mit.edu	37	9	121929706	121929706	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:121929706A>G	uc004bkc.2	-	8	2398	c.1942T>C	c.(1942-1944)TTC>CTC	p.F648L		NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	648					cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TTGATGTAGAACTGCCTCTTG	0.577													53	60					0	0	0.003610	0	0
PSMD5	5711	broad.mit.edu	37	9	123594208	123594208	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:123594208C>A	uc004bko.2	-	3	353	c.334G>T	c.(334-336)GAA>TAA	p.E112*	PSMD5_uc011lye.1_Nonsense_Mutation_p.E112*	NM_005047	NP_005038	Q16401	PSMD5_HUMAN	proteasome 26S non-ATPase subunit 5	112					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|proteasome regulatory particle assembly|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding				0						TCAGAATTTTCAACAATTCTT	0.353													64	66					2.73361e-28	3.88223e-28	0.003610	1	0
C5	727	broad.mit.edu	37	9	123742403	123742403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:123742403G>A	uc004bkv.2	-	28	3646	c.3616C>T	c.(3616-3618)CGT>TGT	p.R1206C		NM_001735	NP_001726	P01031	CO5_HUMAN	complement component 5 preproprotein	1206					activation of MAPK activity|chemotaxis|complement activation, alternative pathway|complement activation, classical pathway|cytolysis|G-protein coupled receptor protein signaling pathway|inflammatory response|negative regulation of macrophage chemotaxis|positive regulation of chemokine secretion|positive regulation vascular endothelial growth factor production	extracellular space|membrane attack complex	chemokine activity|endopeptidase inhibitor activity			ovary(2)	2				OV - Ovarian serous cystadenocarcinoma(323;4.98e-53)|GBM - Glioblastoma multiforme(294;0.0242)	Eculizumab(DB01257)	ACAATTGAACGAAACTGTGGG	0.333													11	49					0	0	0.008291	0	0
PTGS1	5742	broad.mit.edu	37	9	125145992	125145992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:125145992G>A	uc004bmg.1	+	8	1102	c.967G>A	c.(967-969)GGC>AGC	p.G323S	PTGS1_uc011lys.1_Missense_Mutation_p.G298S|PTGS1_uc010mwb.1_Missense_Mutation_p.G214S|PTGS1_uc004bmf.1_Missense_Mutation_p.G323S|PTGS1_uc004bmh.1_Missense_Mutation_p.G214S|PTGS1_uc011lyt.1_Missense_Mutation_p.G214S	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	323					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CCCCACCTGGGGCGATGAGCA	0.597													11	27					0	0	0.000978	0	0
OR1N2	138882	broad.mit.edu	37	9	125316021	125316021	+	Silent	SNP	C	T	T	rs143315983		TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:125316021C>T	uc011lyx.1	+	1	573	c.573C>T	c.(571-573)ATC>ATT	p.I191I		NM_001004457	NP_001004457	Q8NGR9	OR1N2_HUMAN	olfactory receptor, family 1, subfamily N,	191	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.I191I(1)		ovary(2)|skin(2)	4						AGAAAGCCATCCCTCATTTCT	0.527													30	44					0	0	0.003610	0	0
OR1L8	138881	broad.mit.edu	37	9	125329963	125329963	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:125329963G>A	uc004bmp.1	-	1	794	c.794C>T	c.(793-795)TCC>TTC	p.S265F		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	265	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						AGCGTAGGTGGATGGGGGCTG	0.458													13	34					0	0	0.003163	0	0
OR1L8	138881	broad.mit.edu	37	9	125330187	125330187	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:125330187G>A	uc004bmp.1	-	1	570	c.570C>T	c.(568-570)TGC>TGT	p.C190C		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	190	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						ATATGGAAGAGCAGGACAATT	0.438													28	22					0	0	0.006320	0	0
RABGAP1	23637	broad.mit.edu	37	9	125777884	125777884	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:125777884C>T	uc011lzh.1	+	12	1746	c.1612C>T	c.(1612-1614)CTT>TTT	p.L538F	RABGAP1_uc004bnl.3_RNA	NM_012197	NP_036329	Q9Y3P9	RBGP1_HUMAN	RAB GTPase activating protein 1	538					cell cycle	centrosome|cytosol|microtubule associated complex	Rab GTPase activator activity|tubulin binding			ovary(3)|kidney(2)	5						AGAAAAAATTCTTGAAACATG	0.323													16	13					0	0	0.004007	0	0
DNM1	1759	broad.mit.edu	37	9	130982538	130982538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:130982538G>A	uc011mau.1	+	6	854	c.767G>A	c.(766-768)CGA>CAA	p.R256Q	DNM1_uc010mxr.2_Missense_Mutation_p.R256Q|DNM1_uc011mat.1_Missense_Mutation_p.R256Q	NM_004408	NP_004399	Q05193	DYN1_HUMAN	dynamin 1 isoform 1	256					receptor-mediated endocytosis	microtubule	GTP binding|GTPase activity			ovary(2)	2						GCTGCTGAACGAAAGTTCTTC	0.547													17	83					0	0	0.001523	0	0
TBC1D13	54662	broad.mit.edu	37	9	131568245	131568245	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:131568245C>T	uc010myj.2	+	10	1149	c.1026C>T	c.(1024-1026)TTC>TTT	p.F342F	TBC1D13_uc010myk.2_Silent_p.F217F|TBC1D13_uc010myl.2_Silent_p.F161F	NM_018201	NP_060671	Q9NVG8	TBC13_HUMAN	TBC1 domain family, member 13	342	Rab-GAP TBC.					intracellular	Rab GTPase activator activity				0						ACTCCCTCTTCGCCGATGACA	0.582													7	22					0	0	0.004482	0	0
LRRC8A	56262	broad.mit.edu	37	9	131670802	131670802	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:131670802G>A	uc004bwl.3	+	3	1613	c.1359G>A	c.(1357-1359)CTG>CTA	p.L453L	LRRC8A_uc010myp.2_Silent_p.L453L|LRRC8A_uc010myq.2_Silent_p.L453L	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	453	LRR 4.				pre-B cell differentiation	integral to membrane					0						TCCTCAAGCTGGAGCTGATCC	0.612													11	9					0	0	0.000978	0	0
NUP214	8021	broad.mit.edu	37	9	134073038	134073039	+	Missense_Mutation	DNP	CC	TT	TT	rs3739507	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:134073038_134073039CC>TT	uc004cag.2	+	29	4268_4269	c.4157_4158CC>TT	c.(4156-4158)CCC>CTT	p.P1386L	NUP214_uc004cah.2_Missense_Mutation_p.P1376L|NUP214_uc004cai.2_Missense_Mutation_p.P816L|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.P212L|NUP214_uc011mcf.1_Missense_Mutation_p.P163L|NUP214_uc010mzh.1_5'UTR|NUP214_uc010mzi.1_5'UTR	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1386	Pro/Ser/Thr-rich.|11 X 5 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		CACACGGAGCCCCCTGTGACAT	0.574			T	DEK|SET|ABL1	AML|T-ALL								31	32					0	0	0.004672	0	0
BAT2L1	84726	broad.mit.edu	37	9	134351178	134351178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:134351178C>T	uc004can.3	+	15	3717	c.3662C>T	c.(3661-3663)TCC>TTC	p.S1221F	BAT2L1_uc010mzj.1_Missense_Mutation_p.S804F|BAT2L1_uc004cao.3_Missense_Mutation_p.S579F	NM_013318	NP_037450	Q5JSZ5	PRC2B_HUMAN	HLA-B associated transcript 2-like	1221							protein binding				0						ACCTTCGTCTCCAAAGAGTCA	0.617											OREG0019561	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	8	12					0	0	0.004482	0	0
RALGDS	5900	broad.mit.edu	37	9	135984181	135984181	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:135984181G>A	uc004cco.2	-	5	677	c.657C>T	c.(655-657)CCC>CCT	p.P219P	RALGDS_uc004ccp.2_RNA|RALGDS_uc004ccq.2_Silent_p.P207P|RALGDS_uc004ccr.2_Silent_p.P218P|RALGDS_uc011mcv.1_Silent_p.P190P|RALGDS_uc004ccs.2_Silent_p.P164P|RALGDS_uc011mcw.1_Silent_p.P290P|RALGDS_uc004ccv.1_5'UTR|RALGDS_uc004ccu.1_5'UTR	NM_006266	NP_006257	Q12967	GNDS_HUMAN	ral guanine nucleotide dissociation stimulator	219	N-terminal Ras-GEF.				nerve growth factor receptor signaling pathway|Ras protein signal transduction|regulation of small GTPase mediated signal transduction	cytosol	Ral guanyl-nucleotide exchange factor activity			large_intestine(1)|lung(1)|ovary(1)	3				OV - Ovarian serous cystadenocarcinoma(145;3.66e-06)|Epithelial(140;2.77e-05)		GCTTGAGGCAGGGAAAGTCCG	0.632			T	CIITA	PMBL|Hodgkin Lymphona|								9	19					0	0	0.008291	0	0
COL5A1	1289	broad.mit.edu	37	9	137620602	137620602	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:137620602C>T	uc004cfe.2	+	6	1255	c.873C>T	c.(871-873)ACC>ACT	p.T291T		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	291	Nonhelical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		AGGAGCCCACCCCCAGCAAGA	0.607													32	39					0	0	0.004289	0	0
COL5A1	1289	broad.mit.edu	37	9	137704451	137704451	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:137704451G>A	uc004cfe.2	+	48	4127	c.3745G>A	c.(3745-3747)GGC>AGC	p.G1249S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1249	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CTTTTCCTAGGGCCCCCCGGG	0.622													4	6					0	0	0.000248	0	0
FCN1	2219	broad.mit.edu	37	9	137806247	137806247	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:137806247C>T	uc004cfi.2	-	4	383	c.291G>A	c.(289-291)GGG>GGA	p.G97G		NM_002003	NP_001994	O00602	FCN1_HUMAN	ficolin 1 precursor	97					opsonization|signal transduction	collagen|extracellular space	antigen binding|calcium ion binding|receptor binding|sugar binding			large_intestine(1)|ovary(1)	2		Myeloproliferative disorder(178;0.0333)		OV - Ovarian serous cystadenocarcinoma(145;3.46e-08)|Epithelial(140;6.01e-08)|all cancers(34;3.69e-07)		CTCCACGCATCCCCTTCTCTC	0.632													31	19					0	0	0.001786	0	0
KIAA0649	9858	broad.mit.edu	37	9	138376964	138376964	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:138376964G>A	uc004cfr.1	+	4	1157	c.608G>A	c.(607-609)GGA>GAA	p.G203E		NM_014811	NP_055626	Q5T8A7	K0649_HUMAN	1A6/DRIM (down-regulated in metastasis)	203						nucleolus	protein binding			ovary(2)|central_nervous_system(1)	3				OV - Ovarian serous cystadenocarcinoma(145;6.91e-08)|Epithelial(140;4.69e-07)|all cancers(34;9.33e-06)		AGCCAGGTGGGATCCAGCAAG	0.607													25	29					0	0	0.003954	0	0
INPP5E	56623	broad.mit.edu	37	9	139327674	139327674	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:139327674G>A	uc004cho.2	-	4	1477	c.1092C>T	c.(1090-1092)TCC>TCT	p.S364S	INPP5E_uc010nbm.2_Silent_p.S364S	NM_019892	NP_063945	Q9NRR6	INP5E_HUMAN	inositol polyphosphate-5-phosphatase E	364						cilium axoneme|cytoskeleton|Golgi cisterna membrane	inositol-polyphosphate 5-phosphatase activity|phosphatidylinositol-4,5-bisphosphate 5-phosphatase activity			skin(1)	1		Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;8.36e-06)|Epithelial(140;1.4e-05)		GGGCCGCCGAGGACAGCAGCA	0.692													4	11					0	0	0.000248	0	0
NOTCH1	4851	broad.mit.edu	37	9	139391512	139391512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:139391512G>A	uc004chz.2	-	34	6679	c.6679C>T	c.(6679-6681)CCG>TCG	p.P2227S		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	2227	Cytoplasmic (Potential).				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		GGCACGGACGGAGACTGCTGG	0.701			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			7	21					0	0	0.003080	0	0
COBRA1	25920	broad.mit.edu	37	9	140151454	140151454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:140151454C>T	uc004cmm.3	+	4	748	c.545C>T	c.(544-546)TCT>TTT	p.S182F		NM_015456	NP_056271	Q8WX92	NELFB_HUMAN	cofactor of BRCA1	182				S -> A (in Ref. 5).	negative regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription elongation from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleoplasm	protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.137)	OV - Ovarian serous cystadenocarcinoma(145;9.42e-05)|Epithelial(140;0.000766)		ACAGAGCTCTCTGTCCTGCAC	0.607													20	28					0	0	0.003330	0	0
EXD3	54932	broad.mit.edu	37	9	140242540	140242540	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:140242540G>A	uc004cmp.2	-	17	2177	c.1981C>T	c.(1981-1983)CAC>TAC	p.H661Y	C9orf167_uc011mew.1_Intron|EXD3_uc010ncf.1_Missense_Mutation_p.H312Y|EXD3_uc004cmq.1_RNA	NM_017820	NP_060290	Q8N9H8	MUT7_HUMAN	exonuclease 3'-5' domain containing 3	661					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process	intracellular	3'-5' exonuclease activity|nucleic acid binding				0						GCCCTGCGGTGGTCTTCACCA	0.647													9	8					0	0	0.000978	0	0
ASMTL	8623	broad.mit.edu	37	X	1546840	1546840	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:1546840G>A	uc004cpx.1	-	7	795	c.684C>T	c.(682-684)TCC>TCT	p.S228S	ASMTL_uc011mhe.1_Silent_p.S152S|ASMTL_uc004cpy.1_Silent_p.S212S|ASMTL_uc011mhf.1_Silent_p.S170S	NM_004192	NP_004183	O95671	ASML_HUMAN	acetylserotonin O-methyltransferase-like	228					melatonin biosynthetic process	cytoplasm	acetylserotonin O-methyltransferase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGGCCGGGATGGAGTCGTGCT	0.672													10	28					0	0	0.006214	0	0
ASMT	438	broad.mit.edu	37	X	1742086	1742086	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:1742086G>A	uc004cqd.2	+	3	269	c.124G>A	c.(124-126)GGG>AGG	p.G42R	ASMT_uc010ncy.2_Missense_Mutation_p.G42R|ASMT_uc004cqe.2_Missense_Mutation_p.G42R	NM_004043	NP_004034	P46597	HIOM_HUMAN	acetylserotonin O-methyltransferase	42					melatonin biosynthetic process|translation	cytosol	acetylserotonin O-methyltransferase activity|S-methyltransferase activity			skin(1)	1		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CGAGGCCCCAGGGCCCCTGGA	0.642													28	20					0	0	0.006320	0	0
ARSE	415	broad.mit.edu	37	X	2853178	2853178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:2853178C>T	uc004crc.3	-	11	1715	c.1465G>A	c.(1465-1467)GCC>ACC	p.A489T	ARSE_uc011mhi.1_Missense_Mutation_p.A435T|ARSE_uc011mhh.1_Missense_Mutation_p.A514T	NM_000047	NP_000038	P51690	ARSE_HUMAN	arylsulfatase E precursor	489					skeletal system development	Golgi stack	arylsulfatase activity|metal ion binding			ovary(1)|central_nervous_system(1)	2		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CAGGCACCGGCTCCCTCTGGC	0.502													5	4					0	0	0.001168	0	0
ARSH	347527	broad.mit.edu	37	X	2942108	2942108	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:2942108C>T	uc011mhj.1	+	6	948	c.948C>T	c.(946-948)ACC>ACT	p.T316T		NM_001011719	NP_001011719	Q5FYA8	ARSH_HUMAN	arylsulfatase family, member H	316						integral to membrane	arylsulfatase activity|metal ion binding			lung(1)	1		all_cancers(21;9e-05)|all_epithelial(21;6.22e-06)|all_lung(23;0.000597)|Lung NSC(23;0.00901)|Lung SC(21;0.186)				CCAACCACACCTTGGTGTACT	0.577													8	6					0	0	0.006214	0	0
MXRA5	25878	broad.mit.edu	37	X	3229661	3229661	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:3229661C>T	uc004crg.3	-	7	6740	c.6583G>A	c.(6583-6585)GAT>AAT	p.D2195N		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2195	Ig-like C2-type 6.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				ATTCTGCTATCAAAACTACAG	0.428													11	15					0	0	0.001368	0	0
TLR8	51311	broad.mit.edu	37	X	12939916	12939916	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:12939916G>A	uc004cve.2	+	2	2825	c.2757G>A	c.(2755-2757)GAG>GAA	p.E919E	TLR8_uc004cvd.2_Silent_p.E937E	NM_138636	NP_619542	Q9NR97	TLR8_HUMAN	toll-like receptor 8 precursor	919	Cytoplasmic (Potential).|TIR.				cellular response to mechanical stimulus|defense response to virus|I-kappaB kinase/NF-kappaB cascade|immunoglobulin mediated immune response|inflammatory response|innate immune response|positive regulation of innate immune response|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process	endosome membrane	DNA binding|double-stranded RNA binding|single-stranded RNA binding|transmembrane receptor activity			ovary(4)|lung(2)|large_intestine(1)	7						GTCTAGAGGAGAGGGATTGGG	0.438													47	1					0	0	0.003610	0	0
MAP7D2	256714	broad.mit.edu	37	X	20074887	20074887	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:20074887C>T	uc004czr.1	-	4	414	c.395G>A	c.(394-396)CGC>CAC	p.R132H	MAP7D2_uc004czq.1_Missense_Mutation_p.R3H|MAP7D2_uc011mji.1_Missense_Mutation_p.R88H|MAP7D2_uc010nfo.1_Missense_Mutation_p.R132H|MAP7D2_uc011mjj.1_Missense_Mutation_p.R132H|MAP7D2_uc004czs.1_Missense_Mutation_p.R88H	NM_152780	NP_689993	Q96T17	MA7D2_HUMAN	MAP7 domain containing 2	132	Potential.									ovary(2)|breast(1)	3						CAGGGACCGGCGCATCATCGC	0.562													24	0					0	0	0.005443	0	0
CNKSR2	22866	broad.mit.edu	37	X	21627233	21627233	+	Silent	SNP	T	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:21627233T>A	uc004czx.1	+	20	2226	c.2190T>A	c.(2188-2190)CTT>CTA	p.L730L	CNKSR2_uc004czw.2_Silent_p.L730L|CNKSR2_uc011mjn.1_Silent_p.L681L|CNKSR2_uc011mjo.1_Silent_p.L700L|CNKSR2_uc004czy.2_Silent_p.L322L	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	730					regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						ATAGCCGACTTTCCTCCACGG	0.502													33	1					0	0	0.004878	0	0
ZFX	7543	broad.mit.edu	37	X	24229455	24229455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:24229455C>T	uc004dbf.2	+	9	2638	c.2380C>T	c.(2380-2382)CAC>TAC	p.H794Y	ZFX_uc004dbe.2_3'UTR|ZFX_uc011mjv.1_Missense_Mutation_p.H833Y|ZFX_uc010nfz.2_Missense_Mutation_p.H450Y	NM_003410	NP_003401	P17010	ZFX_HUMAN	zinc finger protein, X-linked	794	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|transcription coactivator activity|zinc ion binding			ovary(2)	2						AAAGAACCAGCACATAATGCG	0.418													30	0					0	0	0.008361	0	0
PCYT1B	9468	broad.mit.edu	37	X	24608156	24608156	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:24608156A>G	uc004dbi.2	-	4	703	c.470T>C	c.(469-471)TTT>TCT	p.F157S	PCYT1B_uc004dbk.3_Missense_Mutation_p.F157S|PCYT1B_uc004dbj.2_Missense_Mutation_p.F139S	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	157	Catalytic (Potential).					endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	TTTTTCCAGAAACTCTGGCGT	0.478													20	1					0	0	0.002780	0	0
FAM47C	442444	broad.mit.edu	37	X	37027926	37027926	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:37027926G>A	uc004ddl.1	+	1	1457	c.1443G>A	c.(1441-1443)AAG>AAA	p.K481K		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	481										ovary(3)	3						CTCCAGAGAAGGACGTATCTC	0.632													42	1					0	0	0.007835	0	0
RBM10	8241	broad.mit.edu	37	X	47045478	47045479	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:47045478_47045479GG>AA	uc004dhf.2	+	22	2824_2825	c.2445_2446GG>AA	c.(2443-2448)CGGGAC>CGAAAC	p.D816N	RBM10_uc004dhg.2_Missense_Mutation_p.D738N|RBM10_uc004dhh.2_Missense_Mutation_p.D815N|RBM10_uc010nhq.2_Missense_Mutation_p.D739N|RBM10_uc004dhi.2_Missense_Mutation_p.D881N	NM_005676	NP_005667	P98175	RBM10_HUMAN	RNA binding motif protein 10 isoform 1	816					mRNA processing|RNA splicing	chromatin remodeling complex	nucleotide binding|RNA binding|zinc ion binding			ovary(1)|large_intestine(1)|prostate(1)|breast(1)|pancreas(1)	5						TGAAGTACCGGGACCGTGCAGC	0.559													9	0					0	0	0.004672	0	0
ZNF182	7569	broad.mit.edu	37	X	47835805	47835805	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:47835805G>A	uc004dir.2	-	7	2027	c.1681C>T	c.(1681-1683)CAG>TAG	p.Q561*	ZNF182_uc004dis.2_Nonsense_Mutation_p.Q542*|ZNF182_uc004dit.2_Nonsense_Mutation_p.Q561*|ZNF182_uc011mlu.1_Nonsense_Mutation_p.Q541*	NM_006962	NP_008893	P17025	ZN182_HUMAN	zinc finger protein 21 isoform 1	561	C2H2-type 13.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|lung(1)	3						TGCGTTCTCTGATGTATTATG	0.423													33	0					0	0	0.002836	0	0
XAGE3	170626	broad.mit.edu	37	X	52896099	52896099	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:52896099C>T	uc004dre.2	-	2	126	c.66G>A	c.(64-66)CTG>CTA	p.L22L	XAGE3_uc004drf.2_Silent_p.L22L	NM_130776	NP_570132	Q8WTP9	GAGD4_HUMAN	XAGE-3 protein	22											0						TAGGCCCAATCAGCTCAGGAG	0.393													41	38					0	0	0.003610	0	0
TRO	7216	broad.mit.edu	37	X	54956549	54956549	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:54956549C>G	uc004dtq.2	+	12	3499	c.3392C>G	c.(3391-3393)GCT>GGT	p.A1131G	TRO_uc004dts.2_Intron|TRO_uc004dtr.2_Intron|TRO_uc004dtt.2_Intron|TRO_uc004dtu.2_Intron|TRO_uc004dtv.2_Intron|TRO_uc011mok.1_Missense_Mutation_p.A662G|TRO_uc004dtw.2_Missense_Mutation_p.A734G|TRO_uc004dtx.2_Missense_Mutation_p.A514G	NM_001039705	NP_001034794	Q12816	TROP_HUMAN	trophinin isoform 5	1131	62 X 10 AA approximate tandem repeats.|33.				embryo implantation|homophilic cell adhesion	integral to plasma membrane				ovary(1)	1						GGCTTTGGTGCTGCTCCCAGC	0.577													4	1					0	0	0.004007	0	0
FOXR2	139628	broad.mit.edu	37	X	55650279	55650279	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:55650279C>T	uc004duo.2	+	1	447	c.135C>T	c.(133-135)ATC>ATT	p.I45I		NM_198451	NP_940853	Q6PJQ5	FOXR2_HUMAN	forkhead box R2	45					embryo development|organ development|pattern specification process|regulation of sequence-specific DNA binding transcription factor activity|tissue development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			lung(2)|central_nervous_system(1)	3						CTGAGCAAATCCTTGCCAAAT	0.517													40	2					0	0	0.007835	0	0
TEX11	56159	broad.mit.edu	37	X	69945116	69945116	+	Silent	SNP	A	G	G			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:69945116A>G	uc004dyl.2	-	13	1128	c.966T>C	c.(964-966)CTT>CTC	p.L322L	TEX11_uc004dyk.2_5'Flank|TEX11_uc004dym.2_Silent_p.L307L	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	322							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					TCATACCTTCAAGGAGTTCTT	0.308													57	3					0	0	0.003610	0	0
PHKA1	5255	broad.mit.edu	37	X	71925051	71925051	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:71925051C>T	uc004eax.3	-	3	582	c.281G>A	c.(280-282)AGA>AAA	p.R94K	PHKA1_uc004eay.3_Missense_Mutation_p.R94K|PHKA1_uc011mqi.1_Missense_Mutation_p.R94K	NM_002637	NP_002628	P46020	KPB1_HUMAN	phosphorylase kinase, alpha 1 (muscle) isoform	94					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity|phosphorylase kinase activity			ovary(3)|skin(1)	4	Renal(35;0.156)					CCATACCTGTCTGATCATGCA	0.348													20	16					0	0	0.002780	0	0
NAP1L2	4674	broad.mit.edu	37	X	72433506	72433506	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:72433506T>C	uc004ebi.2	-	1	1179	c.823A>G	c.(823-825)AAG>GAG	p.K275E	NAP1L2_uc011mqj.1_Missense_Mutation_p.K133E	NM_021963	NP_068798	Q9ULW6	NP1L2_HUMAN	nucleosome assembly protein 1-like 2	275					nucleosome assembly	chromatin assembly complex				lung(1)	1	Renal(35;0.156)					TCTGAAAGCTTAACTTTAATA	0.358													33	0					0	0	0.002836	0	0
XIST	7503	broad.mit.edu	37	X	73066500	73066500	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:73066500G>A	uc004ebm.1	-	1		c.6089C>T				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						TGCTGGAAGGGAAAAGTGGGG	0.473													8	18					0	0	0.004482	0	0
P2RY10	27334	broad.mit.edu	37	X	78216644	78216644	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:78216644C>T	uc004ede.2	+	4	996	c.627C>T	c.(625-627)ATC>ATT	p.I209I	P2RY10_uc004edf.2_Silent_p.I209I	NM_014499	NP_055314	O00398	P2Y10_HUMAN	G-protein coupled purinergic receptor P2Y10	209	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(2)|breast(1)	5						GATTTGTGATCCCAGTGATCA	0.468													20	19					0	0	0.002299	0	0
CYLC1	1538	broad.mit.edu	37	X	83126557	83126557	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:83126557G>A	uc004eei.1	+	3	177	c.156G>A	c.(154-156)TTG>TTA	p.L52L	CYLC1_uc004eeh.1_Silent_p.L51L	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	52					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						CAAGACCTTTGAAATCACAAA	0.299													33	2					0	0	0.004289	0	0
CYLC1	1538	broad.mit.edu	37	X	83129107	83129107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:83129107G>A	uc004eei.1	+	4	1412	c.1391G>A	c.(1390-1392)GGG>GAG	p.G464E	CYLC1_uc004eeh.1_Missense_Mutation_p.G463E	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	464	6.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						GAAAAGAAGGGGAAGAAAGAT	0.348													3	3					0	0	0.004672	0	0
POF1B	79983	broad.mit.edu	37	X	84606427	84606427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:84606427G>A	uc004eer.2	-	5	615	c.469C>T	c.(469-471)CAT>TAT	p.H157Y	POF1B_uc004ees.2_Missense_Mutation_p.H157Y	NM_024921	NP_079197	Q8WVV4	POF1B_HUMAN	premature ovarian failure, 1B	157							actin binding				0						GGGAAGAAATGGCTTCCTCTT	0.289													19	20					0	0	0.008871	0	0
PCDH19	57526	broad.mit.edu	37	X	99657660	99657660	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:99657660G>A	uc010nmz.2	-	3	4154	c.2478C>T	c.(2476-2478)CGC>CGT	p.R826R	PCDH19_uc004efw.3_Silent_p.R779R|PCDH19_uc004efx.3_Silent_p.R779R	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	826	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TCTCAGAGCGGCGGCAGCCCA	0.552													14	0					0	0	0.001855	0	0
NXF4	55999	broad.mit.edu	37	X	101818258	101818258	+	RNA	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:101818258G>A	uc004ejf.1	+	7		c.848G>A				NR_002216				Homo sapiens cDNA FLJ42710 fis, clone BRAMY3007609, moderately similar to Homo sapiens nuclear RNA export factor 2 (NXF2).												0						AGTCTGCCTGGAAAGGAGACT	0.567													60	1					0	0	0.003610	0	0
GPRASP2	114928	broad.mit.edu	37	X	101970302	101970302	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:101970302C>T	uc004ejk.2	+	4	1839	c.505C>T	c.(505-507)CTG>TTG	p.L169L	GPRASP2_uc004ejl.2_Silent_p.L169L|GPRASP2_uc004ejm.2_Silent_p.L169L|GPRASP2_uc011mrp.1_5'Flank	NM_138437	NP_612446	Q96D09	GASP2_HUMAN	G protein-coupled receptor associated sorting	169						cytoplasm	protein binding			ovary(1)	1						ATCTAAGGGCCTGTCTATGGA	0.527													59	3					0	0	0.003610	0	0
TCEAL5	340543	broad.mit.edu	37	X	102529150	102529150	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:102529150C>T	uc004ejz.1	-	3	637	c.342G>A	c.(340-342)CGG>CGA	p.R114R		NM_001012979	NP_001012997	Q5H9L2	TCAL5_HUMAN	transcription elongation factor A (SII)-like 5	114					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding			lung(1)|breast(1)	2						TTTTTGCTTTCCGGGGCACAT	0.582													22	29					0	0	0.001882	0	0
NRK	203447	broad.mit.edu	37	X	105184003	105184003	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:105184003G>A	uc004emd.2	+	23	4240	c.3937G>A	c.(3937-3939)GGC>AGC	p.G1313S	NRK_uc010npc.1_Missense_Mutation_p.G981S	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1313	CNH.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TAAGTTAACAGGCTGTGAACA	0.363										HNSCC(51;0.14)			6	0					0	0	0.001168	0	0
SERPINA7	6906	broad.mit.edu	37	X	105280645	105280645	+	Silent	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:105280645G>A	uc004eme.1	-	1	421	c.405C>T	c.(403-405)TTC>TTT	p.F135F	SERPINA7_uc010npd.2_Silent_p.F135F|SERPINA7_uc010npe.1_Silent_p.F135F	NM_000354	NP_000345	P05543	THBG_HUMAN	serine (or cysteine) proteinase inhibitor, clade	135					regulation of proteolysis	extracellular space	serine-type endopeptidase inhibitor activity				0					Levothyroxine(DB00451)|Liothyronine(DB00279)	GCTTGCCAATGAAGAGGGCAT	0.438													70	5					0	0	0.003610	0	0
COL4A5	1287	broad.mit.edu	37	X	107829938	107829938	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:107829938C>T	uc004enz.1	+	19	1328	c.1126C>T	c.(1126-1128)CCT>TCT	p.P376S	COL4A5_uc011mso.1_Missense_Mutation_p.P376S|COL4A5_uc004eob.1_5'UTR	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	376	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						GCGAGGATTTCCTGGAATACA	0.438									Alport_syndrome_with_Diffuse_Leiomyomatosis				62	0					0	0	0.003610	0	0
DCX	1641	broad.mit.edu	37	X	110644262	110644262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:110644262C>T	uc004epd.2	-	3	1076	c.904G>A	c.(904-906)GAG>AAG	p.E302K	DCX_uc011msv.1_Missense_Mutation_p.E302K|DCX_uc004epe.2_Missense_Mutation_p.E221K|DCX_uc004epf.2_Missense_Mutation_p.E221K|DCX_uc004epg.2_Missense_Mutation_p.E221K	NM_000555	NP_000546	O43602	DCX_HUMAN	doublecortin isoform a	302	Doublecortin 2.				axon guidance|central nervous system development|intracellular signal transduction	cytosol|microtubule associated complex	microtubule binding			central_nervous_system(2)|lung(1)|skin(1)	4						ACCCCGGTCTCCAGTTTGATG	0.443													62	2					0	0	0.003610	0	0
ZCCHC16	340595	broad.mit.edu	37	X	111698219	111698219	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:111698219C>T	uc004epo.1	+	3	704	c.263C>T	c.(262-264)TCT>TTT	p.S88F		NM_001004308	NP_001004308	Q6ZR62	ZCH16_HUMAN	zinc finger, CCHC domain containing 16	88							nucleic acid binding|zinc ion binding			ovary(1)	1						CTCCAAATCTCTAATCCTGCA	0.448													39	0					0	0	0.002222	0	0
AGTR2	186	broad.mit.edu	37	X	115304028	115304028	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:115304028C>T	uc004eqh.3	+	3	702	c.495C>T	c.(493-495)CCC>CCT	p.P165P		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	165	Helical; Name=4; (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						ATATAGTTCCCCTTGTTTGGT	0.398													41	59					0	0	0.002522	0	0
ODZ1	10178	broad.mit.edu	37	X	123630927	123630927	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:123630927C>T	uc004euj.2	-	20	3698	c.3634G>A	c.(3634-3636)GAC>AAC	p.D1212N	ODZ1_uc011muj.1_Missense_Mutation_p.D1211N|ODZ1_uc010nqy.2_Missense_Mutation_p.D1212N	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1212	NHL 1.|Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						AAATTGAAGTCGCCAACATAC	0.443													22	17					0	0	0.002780	0	0
FAM127C	441518	broad.mit.edu	37	X	134156298	134156298	+	Silent	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:134156298C>T	uc004eyc.1	-	1	269	c.192G>A	c.(190-192)AAG>AAA	p.K64K		NM_001078173	NP_001071641	Q17RB0	F127C_HUMAN	family with sequence similarity 127, member C	64											0	Acute lymphoblastic leukemia(192;0.000127)					GGAACGTCACCTTCAGGGCGT	0.607													10	16					0	0	0.000978	0	0
GPR112	139378	broad.mit.edu	37	X	135432151	135432151	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:135432151G>A	uc004ezu.1	+	6	6577	c.6286G>A	c.(6286-6288)GAT>AAT	p.D2096N	GPR112_uc010nsb.1_Missense_Mutation_p.D1891N|GPR112_uc010nsc.1_Missense_Mutation_p.D1863N	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2096	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					AAATGTCACAGATGACATTGT	0.473													27	16					0	0	0.008361	0	0
GPR112	139378	broad.mit.edu	37	X	135432542	135432542	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:135432542C>T	uc004ezu.1	+	6	6968	c.6677C>T	c.(6676-6678)TCC>TTC	p.S2226F	GPR112_uc010nsb.1_Missense_Mutation_p.S2021F|GPR112_uc010nsc.1_Missense_Mutation_p.S1993F	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2226	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TCCACACCTTCCTTTCTATCT	0.463													46	1					0	0	0.003610	0	0
RBMX	27316	broad.mit.edu	37	X	135957686	135957687	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:135957686_135957687GG>AA	uc004fae.1	-	6	809_810	c.599_600CC>TT	c.(598-600)CCC>CTT	p.P200L	RBMX_uc004fac.1_5'Flank|RBMX_uc011mwf.1_Missense_Mutation_p.P92F|RBMX_uc004fad.1_Missense_Mutation_p.P200L|RBMX_uc011mwg.1_Missense_Mutation_p.P161L|RBMX_uc004faf.1_Missense_Mutation_p.P61L|RBMX_uc010nsf.1_Missense_Mutation_p.P161L|RBMX_uc004fag.1_Missense_Mutation_p.P72L	NM_002139	NP_002130	P38159	HNRPG_HUMAN	RNA binding motif protein, X-linked isoform 1	200						catalytic step 2 spliceosome|heterogeneous nuclear ribonucleoprotein complex|nucleoplasm	nucleotide binding|protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CTCTACGAGAGGGCAGCGGTTC	0.371													46	0					0	0	0.004672	0	0
MAGEC2	51438	broad.mit.edu	37	X	141291314	141291314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:141291314G>A	uc004fbu.1	-	3	808	c.460C>T	c.(460-462)CTC>TTC	p.L154F		NM_016249	NP_057333	Q9UBF1	MAGC2_HUMAN	melanoma antigen family C, 2	154	MAGE.					cytoplasm|nucleus				breast(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TCGTATTTGAGGAGCAGGAAC	0.488										HNSCC(46;0.14)			42	38					0	0	0.002222	0	0
GABRE	2564	broad.mit.edu	37	X	151124224	151124224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:151124224G>A	uc004ffi.2	-	7	947	c.893C>T	c.(892-894)TCC>TTC	p.S298F	GABRE_uc011myd.1_RNA	NM_004961	NP_004952	P78334	GBRE_HUMAN	gamma-aminobutyric acid (GABA) A receptor,	298	Helical; (Potential).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GATCCAAAAGGAAACCCAGGA	0.512													45	1					0	0	0.003610	0	0
MAGEA3	4102	broad.mit.edu	37	X	151935284	151935284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:151935284C>T	uc004fgp.2	-	3	1092	c.883G>A	c.(883-885)GGA>AGA	p.G295R		NM_005362	NP_005353	P43357	MAGA3_HUMAN	melanoma antigen family A, 3	295	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					TGAGGTCCTCCACTGATCTTT	0.557													42	53					0	0	0.003610	0	0
TBL1Y	90665	broad.mit.edu	37	Y	6938851	6938851	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrY:6938851A>C	uc004frb.2	+	10	1328	c.681A>C	c.(679-681)GAA>GAC	p.E227D	TBL1Y_uc004frc.2_Missense_Mutation_p.E227D|TBL1Y_uc004frd.2_Missense_Mutation_p.E227D|TBL1Y_uc011nap.1_Missense_Mutation_p.E69D	NM_033284	NP_150600	Q9BQ87	TBL1Y_HUMAN	transducin beta-like 1Y	227					transcription, DNA-dependent						0						GTATACGAGAAGGGGGGCACG	0.488													37	1					0	0	0.004878	0	0
DDX3Y	8653	broad.mit.edu	37	Y	15027838	15027838	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrY:15027838T>C	uc004fsu.1	+	13	1517	c.1208T>C	c.(1207-1209)GTA>GCA	p.V403A	DDX3Y_uc004fsv.2_Missense_Mutation_p.V403A|DDX3Y_uc010nww.1_Missense_Mutation_p.V219A|DDX3Y_uc011nar.1_Missense_Mutation_p.V400A	NM_001122665	NP_001116137	O15523	DDX3Y_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 3,	403						cytoplasm|nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|RNA binding				0						TTTTTGGCTGTAGGCAGAGTA	0.363													66	2					0	0	0.003610	0	0
FOXD2	2306	broad.mit.edu	37	1	47905020	47905020	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:47905020delG	uc001crm.2	+	1	3332	c.1213delG	c.(1213-1215)GGGfs	p.G405fs		NM_004474	NP_004465	O60548	FOXD2_HUMAN	forkhead box D2	405	Gly-rich.|Ala-rich.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding				0				READ - Rectum adenocarcinoma(2;0.0908)		CGGGGGCGCCGGGGCAGGGCA	0.766													2	4	---	---	---	---					
GPR61	83873	broad.mit.edu	37	1	110085890	110085905	+	Frame_Shift_Del	DEL	CTGCCTGGTGGACCTG	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr1:110085890_110085905delCTGCCTGGTGGACCTG	uc001dxy.2	+	2	929_944	c.246_261delCTGCCTGGTGGACCTG	c.(244-261)CTCTGCCTGGTGGACCTGfs	p.L82fs		NM_031936	NP_114142	Q9BZJ8	GPR61_HUMAN	G protein-coupled receptor 61	82_87	Helical; Name=2; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			central_nervous_system(2)	2		all_epithelial(167;2.83e-05)|all_lung(203;0.00016)|Lung NSC(277;0.000318)|Breast(1374;0.244)		Lung(183;0.0426)|Colorectal(144;0.11)|Epithelial(280;0.128)|all cancers(265;0.132)|LUSC - Lung squamous cell carcinoma(189;0.228)		TCTTCCACCTCTGCCTGGTGGACCTGCTGGCTGCCC	0.616													23	33	---	---	---	---					
TAF3	83860	broad.mit.edu	37	10	8007517	8007517	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr10:8007517delT	uc010qbd.1	+	3	2044	c.2044delT	c.(2044-2046)TTGfs	p.L682fs		NM_031923	NP_114129	Q5VWG9	TAF3_HUMAN	RNA polymerase II transcription factor TAFII140	682	Lys-rich.				maintenance of protein location in nucleus|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	transcription factor TFIID complex	protein binding|zinc ion binding			ovary(1)	1						GCCATCTTTGTTGCCAGTGCT	0.383													32	42	---	---	---	---					
AMPD3	272	broad.mit.edu	37	11	10514955	10514956	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr11:10514955_10514956insA	uc001mio.1	+	7	1334_1335	c.999_1000insA	c.(997-1002)ATCAAGfs	p.I333fs	AMPD3_uc010rbz.1_Frame_Shift_Ins_p.I174fs|AMPD3_uc001min.1_Frame_Shift_Ins_p.I342fs|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Frame_Shift_Ins_p.I340fs|AMPD3_uc009yfy.2_Frame_Shift_Ins_p.I333fs	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	333_334					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		TGCGCTTCATCAAGCACACATA	0.614													46	78	---	---	---	---					
AKAP11	11215	broad.mit.edu	37	13	42876378	42876387	+	Frame_Shift_Del	DEL	CTCATGCGAT	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr13:42876378_42876387delCTCATGCGAT	uc001uys.1	+	8	3671_3680	c.3496_3505delCTCATGCGAT	c.(3496-3507)CTCATGCGATCTfs	p.L1166fs		NM_016248	NP_057332	Q9UKA4	AKA11_HUMAN	A-kinase anchor protein 11	1166_1169					intracellular protein kinase cascade	microtubule organizing center	protein kinase A binding|protein phosphatase 1 binding			ovary(1)|central_nervous_system(1)	2		Lung NSC(96;1.86e-05)|Prostate(109;0.0165)|Lung SC(185;0.0262)|Breast(139;0.0707)|Hepatocellular(98;0.114)		OV - Ovarian serous cystadenocarcinoma(117;0.000365)|GBM - Glioblastoma multiforme(144;0.00116)|BRCA - Breast invasive adenocarcinoma(63;0.19)		CATGTTGAAACTCATGCGATCTCTTTCTGA	0.429													27	47	---	---	---	---					
SSTR1	6751	broad.mit.edu	37	14	38678738	38678738	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr14:38678738delC	uc001wul.1	+	3	761	c.144delC	c.(142-144)AACfs	p.N48fs	SSTR1_uc010amu.1_RNA	NM_001049	NP_001040	P30872	SSR1_HUMAN	somatostatin receptor 1	48	Extracellular (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation|response to nutrient	integral to plasma membrane	somatostatin receptor activity			central_nervous_system(3)|ovary(1)|lung(1)	5	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00444)	Octreotide(DB00104)	CGTCCCAGAACGGGACCTTGA	0.692													11	11	---	---	---	---					
FMN1	342184	broad.mit.edu	37	15	33359221	33359221	+	Frame_Shift_Del	DEL	C	-	-	rs142673160	by1000genomes	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:33359221delC	uc001zhf.3	-	1	865	c.865delG	c.(865-867)GCTfs	p.A289fs	FMN1_uc001zhg.2_Frame_Shift_Del_p.A289fs	NM_001103184	NP_001096654	Q68DA7	FMN1_HUMAN	formin 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					actin cytoskeleton organization	actin cytoskeleton|adherens junction|cytoplasm|nucleus	actin binding			ovary(1)	1		all_lung(180;1.14e-07)		all cancers(64;3.05e-15)|Epithelial(43;1.67e-10)|GBM - Glioblastoma multiforme(186;4.95e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0262)		CCTCCCTCAGCGGTAGCCCCC	0.498													16	25	---	---	---	---					
VPS13C	54832	broad.mit.edu	37	15	62214170	62214170	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr15:62214170delC	uc002agz.2	-	55	7112	c.7038delG	c.(7036-7038)AAGfs	p.K2346fs	VPS13C_uc002aha.2_Frame_Shift_Del_p.K2303fs|VPS13C_uc002ahb.1_Frame_Shift_Del_p.K2346fs|VPS13C_uc002ahc.1_Frame_Shift_Del_p.K2303fs	NM_020821	NP_065872	Q709C8	VP13C_HUMAN	vacuolar protein sorting 13C protein isoform 2A	2346					protein localization					ovary(2)	2						TCCATTGTCTCTTCCCCTCCA	0.338													40	47	---	---	---	---					
DNAJA2	10294	broad.mit.edu	37	16	47005416	47005416	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr16:47005416delG	uc002eeo.2	-	3	349	c.207delC	c.(205-207)TACfs	p.Y69fs	DNAJA2_uc002eep.2_5'UTR	NM_005880	NP_005871	O60884	DNJA2_HUMAN	DnaJ subfamily A member 2	69	J.				positive regulation of cell proliferation|protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			lung(1)	1		all_cancers(37;0.00125)|all_lung(18;0.00338)|all_epithelial(9;0.00358)|Lung NSC(13;0.0309)|Breast(268;0.116)				CTTGCTCTCCGTATCTGTCAT	0.398													87	121	---	---	---	---					
NF1	4763	broad.mit.edu	37	17	29528134	29528141	+	Frame_Shift_Del	DEL	TTTCTTGC	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:29528134_29528141delTTTCTTGC	uc002hgg.2	+	10	1475_1482	c.1142_1149delTTTCTTGC	c.(1141-1149)GTTTCTTGCfs	p.V381fs	NF1_uc002hge.1_Frame_Shift_Del_p.V381fs|NF1_uc002hgf.1_Frame_Shift_Del_p.V381fs|NF1_uc002hgh.2_Frame_Shift_Del_p.V381fs|NF1_uc010csn.1_Frame_Shift_Del_p.V241fs	NM_001042492	NP_001035957	P21359	NF1_HUMAN	neurofibromin isoform 1	381_383					actin cytoskeleton organization|adrenal gland development|artery morphogenesis|camera-type eye morphogenesis|cerebral cortex development|collagen fibril organization|forebrain astrocyte development|forebrain morphogenesis|heart development|liver development|MAPKKK cascade|metanephros development|myelination in peripheral nervous system|negative regulation of cell migration|negative regulation of endothelial cell proliferation|negative regulation of MAP kinase activity|negative regulation of MAPKKK cascade|negative regulation of neuroblast proliferation|negative regulation of oligodendrocyte differentiation|negative regulation of transcription factor import into nucleus|osteoblast differentiation|phosphatidylinositol 3-kinase cascade|pigmentation|positive regulation of adenylate cyclase activity|positive regulation of neuron apoptosis|Ras protein signal transduction|regulation of blood vessel endothelial cell migration|regulation of bone resorption|response to hypoxia|smooth muscle tissue development|spinal cord development|sympathetic nervous system development|visual learning|wound healing	axon|cytoplasm|dendrite|intrinsic to internal side of plasma membrane|nucleus	protein binding|Ras GTPase activator activity	p.?(2)		soft_tissue(159)|central_nervous_system(56)|lung(28)|large_intestine(27)|haematopoietic_and_lymphoid_tissue(18)|ovary(18)|autonomic_ganglia(12)|breast(3)|skin(3)|stomach(2)|thyroid(1)|prostate(1)|kidney(1)|pancreas(1)	330		all_cancers(10;1.29e-12)|all_epithelial(10;0.00347)|all_hematologic(16;0.00556)|Acute lymphoblastic leukemia(14;0.00593)|Breast(31;0.014)|Myeloproliferative disorder(56;0.0255)|all_lung(9;0.0321)|Lung NSC(157;0.0659)		UCEC - Uterine corpus endometrioid carcinoma (4;4.38e-05)|all cancers(4;1.64e-26)|Epithelial(4;9.15e-23)|OV - Ovarian serous cystadenocarcinoma(4;3.58e-21)|GBM - Glioblastoma multiforme(4;0.00146)		GACTGCCTTGTTTCTTGCTTTCGTATAA	0.370			D|Mis|N|F|S|O		neurofibroma|glioma	neurofibroma|glioma			Neurofibromatosis_type_1	TCGA GBM(6;<1E-08)|TSP Lung(7;0.0071)|TCGA Ovarian(3;0.0088)			17	43	---	---	---	---					
SPATA20	64847	broad.mit.edu	37	17	48632997	48632997	+	Frame_Shift_Del	DEL	G	-	-	rs150608206	byFrequency	TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:48632997delG	uc002irf.2	+	16	2476	c.2335delG	c.(2335-2337)GAAfs	p.E779fs	SPATA20_uc002irc.2_Frame_Shift_Del_p.E446fs|SPATA20_uc002ire.2_Frame_Shift_Del_p.E735fs|SPATA20_uc002ird.2_Frame_Shift_Del_p.E795fs|SPATA20_uc002irg.2_RNA	NM_022827	NP_073738	Q8TB22	SPT20_HUMAN	spermatogenesis associated 20	779					cell differentiation|mannose metabolic process|multicellular organismal development|spermatogenesis	extracellular region	mannose-6-phosphate isomerase activity|protein binding				0	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;9.38e-09)			TGATCCCTGCGAATTACGAAA	0.567													14	15	---	---	---	---					
FTSJ3	117246	broad.mit.edu	37	17	61902618	61902624	+	Frame_Shift_Del	DEL	GATCTCT	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr17:61902618_61902624delGATCTCT	uc002jbz.2	-	6	651_657	c.573_579delAGAGATC	c.(571-579)GCAGAGATCfs	p.A191fs	FTSJ3_uc002jca.2_Frame_Shift_Del_p.A191fs|PSMC5_uc002jcb.2_5'Flank|PSMC5_uc010ddy.2_5'Flank|PSMC5_uc010ddz.2_5'Flank|PSMC5_uc002jcc.2_5'Flank|PSMC5_uc002jcd.2_5'Flank	NM_017647	NP_060117	Q8IY81	RRMJ3_HUMAN	FtsJ homolog 3	191_193					RNA methylation|rRNA processing	nucleolus	methyltransferase activity|nucleic acid binding			ovary(1)	1						AGACTACAAAGATCTCTGCAGATTCAT	0.488													37	43	---	---	---	---					
ALDH16A1	126133	broad.mit.edu	37	19	49969512	49969512	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr19:49969512delG	uc002pnt.2	+	14	2026	c.1910delG	c.(1909-1911)CGGfs	p.R637fs	ALDH16A1_uc010yar.1_Frame_Shift_Del_p.R586fs|ALDH16A1_uc010yas.1_Frame_Shift_Del_p.R472fs|ALDH16A1_uc010yat.1_Frame_Shift_Del_p.R474fs	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	637							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		TGGGGGGCCCGGGTGCAGGCC	0.542													2	4	---	---	---	---					
BIRC6	57448	broad.mit.edu	37	2	32828074	32828074	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr2:32828074delT	uc010ezu.2	+	71	14128	c.13994delT	c.(13993-13995)GTTfs	p.V4665fs		NM_016252	NP_057336	Q9NR09	BIRC6_HUMAN	baculoviral IAP repeat-containing 6	4665	Ubiquitin-conjugating.				anti-apoptosis|apoptosis	intracellular	acid-amino acid ligase activity|cysteine-type endopeptidase inhibitor activity|protein binding			ovary(5)|skin(4)|lung(2)|central_nervous_system(1)|breast(1)|pancreas(1)	14	Acute lymphoblastic leukemia(172;0.155)					GTTCGTCAGGTTTGTTTAAGC	0.343													14	48	---	---	---	---					
YTHDC2	64848	broad.mit.edu	37	5	112874846	112874846	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr5:112874846delA	uc003kqn.2	+	8	1361	c.1178delA	c.(1177-1179)GAAfs	p.E393fs	YTHDC2_uc010jce.1_Frame_Shift_Del_p.E393fs|YTHDC2_uc010jcf.1_Frame_Shift_Del_p.E93fs	NM_022828	NP_073739	Q9H6S0	YTDC2_HUMAN	YTH domain containing 2	393							ATP binding|ATP-dependent helicase activity|nucleic acid binding			skin(2)|central_nervous_system(1)	3		all_cancers(142;7.69e-05)|all_epithelial(76;6.42e-07)|Colorectal(10;0.00278)|Prostate(80;0.00955)|Ovarian(225;0.0444)|Lung NSC(810;0.143)|all_lung(232;0.163)|Breast(839;0.244)		OV - Ovarian serous cystadenocarcinoma(64;7.2e-08)|Epithelial(69;8.83e-08)|all cancers(49;6.9e-06)|COAD - Colon adenocarcinoma(37;0.0458)|Colorectal(14;0.0594)		ACAAACAAAGAAATGTTAAAA	0.224													17	16	---	---	---	---					
GRIK2	2898	broad.mit.edu	37	6	102247659	102247659	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr6:102247659delT	uc003pqp.3	+	7	1337	c.1088delT	c.(1087-1089)ATTfs	p.I363fs	GRIK2_uc003pqn.2_Frame_Shift_Del_p.I363fs|GRIK2_uc003pqo.3_Frame_Shift_Del_p.I363fs|GRIK2_uc010kcw.2_Frame_Shift_Del_p.I363fs	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	363	Extracellular (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	ATGAGTCTAATTAAAGAGGTA	0.438													16	42	---	---	---	---					
TRAF1	7185	broad.mit.edu	37	9	123675735	123675735	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chr9:123675735delC	uc004bku.1	-	5	1148	c.576delG	c.(574-576)GGGfs	p.G192fs	TRAF1_uc011lyg.1_Frame_Shift_Del_p.G70fs|TRAF1_uc010mvl.1_Frame_Shift_Del_p.G192fs	NM_005658	NP_005649	Q13077	TRAF1_HUMAN	TNF receptor-associated factor 1	192					apoptosis|positive regulation of NF-kappaB transcription factor activity|protein complex assembly|regulation of apoptosis|signal transduction	cytoplasm	protein binding|zinc ion binding			skin(2)|ovary(1)	3						CACGCAGCTTCCCCTCCAGCT	0.612													19	33	---	---	---	---					
TLR7	51284	broad.mit.edu	37	X	12905306	12905308	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A2GR-06A-11D-A197-08	TCGA-EE-A2GR-10A-01D-A199-08									Somatic	Phase_I	Capture				Illumina GAIIx	5a17dfc3-f54c-4ca4-a2c3-0a387585d99b	9cff6731-b26a-4b4b-a68e-051b496c2f34	g.chrX:12905306_12905308delCAG	uc004cvc.2	+	3	1818_1820	c.1679_1681delCAG	c.(1678-1683)ACAGCA>ACA	p.A561del		NM_016562	NP_057646	Q9NYK1	TLR7_HUMAN	toll-like receptor 7 precursor	561	Extracellular (Potential).|LRR 18.				cellular response to mechanical stimulus|defense response to virus|I-kappaB phosphorylation|inflammatory response|innate immune response|positive regulation of chemokine production|positive regulation of interferon-alpha biosynthetic process|positive regulation of interferon-beta biosynthetic process|positive regulation of interferon-gamma biosynthetic process|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus	early phagosome|endoplasmic reticulum membrane|endosome membrane|integral to membrane|lysosome|plasma membrane	double-stranded RNA binding|single-stranded RNA binding|siRNA binding|transmembrane receptor activity			ovary(2)|lung(2)|breast(1)	5					Imiquimod(DB00724)	CTCCATTCAACAGCATTTGAAGA	0.369													173	14	---	---	---	---					
