Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
Unknown	0	broad.mit.edu	37	1	13418	13418	+	RNA	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:13418G>A	uc001aaa.3	+	3		c.661G>A			uc010nxq.1_Missense_Mutation_p.E61K|uc010nxr.1_RNA					Homo sapiens mRNA for DEAD/H box polypeptide 11 like 1 (DDX11L1 gene).																		CCACCACCCCGAGATCACATT	0.562000													10	35					0	0	0.001855	0	0
ANGPTL7	10218	broad.mit.edu	37	1	11253759	11253759	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:11253759G>A	uc001ase.2	+	3	839	c.600G>A	c.(598-600)GGG>GGA	p.G200G	MTOR_uc001asd.2_Intron	NM_021146	NP_066969	O43827	ANGL7_HUMAN	angiopoietin-like 7 precursor	200	Fibrinogen C-terminal.				response to oxidative stress|signal transduction	extracellular region	receptor binding				0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.000818)|all_lung(284;0.00105)|Colorectal(325;0.0062)|Breast(348;0.0139)|Hepatocellular(190;0.0305)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.39e-06)|COAD - Colon adenocarcinoma(227;0.000244)|BRCA - Breast invasive adenocarcinoma(304;0.000294)|Kidney(185;0.000728)|KIRC - Kidney renal clear cell carcinoma(229;0.00258)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0487)		GCATCCGTGGGGACTTCTGGC	0.602000													29	7					0	0	0.002096	0	0
EPHA2	1969	broad.mit.edu	37	1	16464803	16464804	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:16464803_16464804CC>TT	uc001aya.1	-	4	1082_1083	c.945_946GG>AA	c.(943-948)CGGGCA>CGAACA	p.A316T	EPHA2_uc010oca.1_Missense_Mutation_p.A316T	NM_004431	NP_004422	P29317	EPHA2_HUMAN	ephrin receptor EphA2 precursor	316	Extracellular (Potential).|Cys-rich.				activation of Rac GTPase activity|angiogenesis|apoptosis|cell chemotaxis|negative regulation of protein kinase B signaling cascade|positive regulation of establishment of protein localization in plasma membrane|protein kinase B signaling cascade|regulation of blood vessel endothelial cell migration|regulation of cell adhesion mediated by integrin|regulation of lamellipodium assembly|response to growth factor stimulus	focal adhesion|integral to plasma membrane|lamellipodium membrane|ruffle membrane	ATP binding|ephrin receptor activity|protein binding			lung(3)|central_nervous_system(3)|stomach(2)|ovary(2)	10		Colorectal(325;3.46e-05)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|Colorectal(212;3.63e-07)|COAD - Colon adenocarcinoma(227;2.25e-05)|BRCA - Breast invasive adenocarcinoma(304;9.58e-05)|Kidney(64;0.000175)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(313;0.00669)|READ - Rectum adenocarcinoma(331;0.0649)	Dasatinib(DB01254)	TCCTGAGGTGCCCGGAAGAAGC	0.634000													9	2					0	0	0.004672	0	0
MST1P2	11209	broad.mit.edu	37	1	16974592	16974592	+	RNA	SNP	C	T	T	rs150466841	by1000genomes	TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:16974592C>T	uc010och.1	+	7		c.1052C>T			MST1P2_uc001azk.2_RNA|MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						TGCCGGAACCCCGACGGCTCA	0.667000													9	44					0	0	0.002450	0	0
PLA2G2D	26279	broad.mit.edu	37	1	20442053	20442053	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:20442053C>T	uc001bcz.2	-	3	256	c.239G>A	c.(238-240)AGC>AAC	p.S80N	PLA2G2D_uc009vpo.2_Intron	NM_012400	NP_036532	Q9UNK4	PA2GD_HUMAN	phospholipase A2, group IID precursor	80					inflammatory response|lipid catabolic process|phospholipid metabolic process	extracellular region	calcium ion binding|phospholipase A2 activity				0		Colorectal(325;0.000147)|Renal(390;0.000469)|Lung NSC(340;0.00412)|all_lung(284;0.00419)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.15e-05)|BRCA - Breast invasive adenocarcinoma(304;8.01e-05)|Kidney(64;0.000175)|GBM - Glioblastoma multiforme(114;0.000798)|KIRC - Kidney renal clear cell carcinoma(64;0.00261)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		CTTGTAGATGCTGCACCCCTG	0.582000										Multiple Myeloma(11;0.12)			52	21					0	0	0.003610	0	0
RBBP4	5928	broad.mit.edu	37	1	33138102	33138102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:33138102C>T	uc001bvr.2	+	9	1177	c.1018C>T	c.(1018-1020)CGC>TGC	p.R340C	RBBP4_uc001bvs.2_Missense_Mutation_p.R339C|RBBP4_uc010ohj.1_Missense_Mutation_p.R88C|RBBP4_uc010ohk.1_Missense_Mutation_p.R305C	NM_005610	NP_005601	Q09028	RBBP4_HUMAN	retinoblastoma binding protein 4 isoform a	340	WD 5.				cell cycle|CenH3-containing nucleosome assembly at centromere|DNA replication|negative regulation of cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|ESC/E(Z) complex|NuRD complex|NURF complex|Sin3 complex	histone binding|histone deacetylase binding			ovary(1)	1		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				TGGTACTGATCGCAGACTGAA	0.358000													59	16					0	0	0.003610	0	0
ZSCAN20	7579	broad.mit.edu	37	1	33960324	33960324	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:33960324T>A	uc001bxj.3	+	8	2547	c.2380T>A	c.(2380-2382)TAT>AAT	p.Y794N	ZSCAN20_uc009vui.2_Missense_Mutation_p.Y793N	NM_145238	NP_660281	P17040	ZSC20_HUMAN	zinc finger protein 31	794	C2H2-type 4.				viral reproduction	mitochondrion|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.211)				GGAAAAGCCCTATAAATGTGG	0.448000													72	21					0	0	0.003610	0	0
CSMD2	114784	broad.mit.edu	37	1	34204909	34204909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:34204909G>A	uc001bxn.1	-	15	2109	c.2080C>T	c.(2080-2082)CCT>TCT	p.P694S	CSMD2_uc001bxm.1_Missense_Mutation_p.P734S	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	694	Sushi 4.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GGAACGCCAGGATCCGGGCAC	0.522000													57	17					0	0	0.003610	0	0
DLGAP3	58512	broad.mit.edu	37	1	35370196	35370196	+	Silent	SNP	G	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:35370196G>C	uc001byc.2	-	1	789	c.789C>G	c.(787-789)TCC>TCG	p.S263S		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	263					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				AGTTGTCATCGGAACTCCACC	0.607000													3	94					0	0	0.004672	0	0
FHL3	2275	broad.mit.edu	37	1	38463446	38463446	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:38463446A>G	uc001ccj.2	-	5	685	c.598T>C	c.(598-600)TTC>CTC	p.F200L	FHL3_uc001cck.2_Missense_Mutation_p.F200L|FHL3_uc001ccl.2_Missense_Mutation_p.F200L|FHL3_uc001ccm.2_Missense_Mutation_p.F92L|FHL3_uc009vvl.1_3'UTR	NM_004468	NP_004459	Q13643	FHL3_HUMAN	four and a half LIM domains 3	200	LIM zinc-binding 3.				muscle organ development		zinc ion binding				0	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)				CGGGAGGTGAACTGCTGCCCT	0.582000													30	13					0	0	0.001786	0	0
SCMH1	22955	broad.mit.edu	37	1	41540948	41540948	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:41540948G>A	uc001cgo.2	-	9	1202	c.891C>T	c.(889-891)TCC>TCT	p.S297S	SCMH1_uc010ojr.1_Silent_p.S139S|SCMH1_uc001cgp.2_Silent_p.S236S|SCMH1_uc001cgr.2_Silent_p.S236S|SCMH1_uc001cgs.2_Silent_p.S307S|SCMH1_uc001cgt.2_Silent_p.S236S|SCMH1_uc001cgq.2_Silent_p.S250S|SCMH1_uc010ojs.1_RNA	NM_001031694	NP_001026864	Q96GD3	SCMH1_HUMAN	sex comb on midleg 1 isoform 1	297					anatomical structure morphogenesis|gene silencing|multicellular organismal development|negative regulation of transcription, DNA-dependent		DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(52;0.00769)|all_hematologic(146;0.0977)|Acute lymphoblastic leukemia(166;0.155)|Breast(333;0.162)	Myeloproliferative disorder(586;0.0393)				CAGCTGTCTTGGATGGGGCAG	0.507000													85	27					0	0	0.003610	0	0
CYP4A11	1579	broad.mit.edu	37	1	47401203	47401203	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:47401203C>T	uc001cqp.3	-	5	678	c.627G>A	c.(625-627)CAG>CAA	p.Q209Q	CYP4A11_uc001cqq.2_Silent_p.Q209Q|CYP4A11_uc010omm.1_RNA	NM_000778	NP_000769	Q02928	CP4AB_HUMAN	cytochrome P450, family 4, subfamily A,	209					long-chain fatty acid metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	alkane 1-monooxygenase activity|electron carrier activity|heme binding|oxygen binding			ovary(2)|skin(2)	4					NADH(DB00157)	ACCTGTCCACCTGGATGCTGC	0.582000													38	7					0	0	0.003214	0	0
PRKAA2	5563	broad.mit.edu	37	1	57171824	57171824	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:57171824G>A	uc001cyk.3	+	8	1424	c.1353G>A	c.(1351-1353)GTG>GTA	p.V451V		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	451					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						GCAATTACGTGAAAATGAGCT	0.338000													29	21					0	0	0.001512	0	0
PDE4B	5142	broad.mit.edu	37	1	66713297	66713297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:66713297C>T	uc001dcn.2	+	4	627	c.436C>T	c.(436-438)CCA>TCA	p.P146S	PDE4B_uc009war.2_Missense_Mutation_p.P54S|PDE4B_uc001dco.2_Missense_Mutation_p.P146S|PDE4B_uc001dcp.2_Missense_Mutation_p.P131S	NM_001037341	NP_001032418	Q07343	PDE4B_HUMAN	phosphodiesterase 4B isoform 1	146					signal transduction	cytosol|insoluble fraction|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|central_nervous_system(1)	3					Adenosine monophosphate(DB00131)|Amrinone(DB01427)|Caffeine(DB00201)|Cilostazol(DB01166)|Dyphylline(DB00651)|Enprofylline(DB00824)|Papaverine(DB01113)|Pentoxifylline(DB00806)|Theophylline(DB00277)	TGACTTGTCACCAAAGGCGAT	0.517000													34	10					0	0	0.004289	0	0
NBPF9	400818	broad.mit.edu	37	1	144828683	144828683	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:144828683C>G	uc009wig.1	+	23	2804	c.2728C>G	c.(2728-2730)CAG>GAG	p.Q910E	NBPF9_uc010oxn.1_Missense_Mutation_p.Q808E|NBPF9_uc010oxo.1_Missense_Mutation_p.Q835E|NBPF9_uc010oxr.1_Missense_Mutation_p.Q937E|NBPF9_uc010oxt.1_Missense_Mutation_p.Q725E|NBPF9_uc001ekg.1_Missense_Mutation_p.Q237E|NBPF9_uc001ekk.1_Missense_Mutation_p.Q481E|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Missense_Mutation_p.Q237E|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Missense_Mutation_p.Q570E|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	910	NBPF 7.					cytoplasm					0						ATTTGAGGAACAGCACATCAG	0.438000													38	72					0	0	0.002522	0	0
NBPF9	400818	broad.mit.edu	37	1	144828688	144828688	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:144828688C>T	uc009wig.1	+	23	2809	c.2733C>T	c.(2731-2733)CAC>CAT	p.H911H	NBPF9_uc010oxn.1_Silent_p.H809H|NBPF9_uc010oxo.1_Silent_p.H836H|NBPF9_uc010oxr.1_Silent_p.H938H|NBPF9_uc010oxt.1_Silent_p.H726H|NBPF9_uc001ekg.1_Silent_p.H238H|NBPF9_uc001ekk.1_Silent_p.H482H|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.H238H|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.H571H|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	911	NBPF 7.					cytoplasm					0						AGGAACAGCACATCAGCTTCG	0.433000													42	75					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	1	148889678	148889678	+	RNA	SNP	C	T	T	rs4950650		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:148889678C>T	uc009wkv.1	+	7		c.765C>T								Homo sapiens cDNA, FLJ17483.																		ACCCTATATGCCTGCGTCTAA	0.398000													12	48					0	0	0.001368	0	0
LINGO4	339398	broad.mit.edu	37	1	151774583	151774583	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:151774583G>A	uc001ezf.1	-	2	788	c.598C>T	c.(598-600)CTT>TTT	p.L200F		NM_001004432	NP_001004432	Q6UY18	LIGO4_HUMAN	leucine rich repeat and Ig domain containing 4	200	Extracellular (Potential).|LRR 6.					integral to membrane				large_intestine(1)	1	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.14)		LUSC - Lung squamous cell carcinoma(543;0.181)			AGACGGGCAAGGGCTAGGCCA	0.647000													17	51					0	0	0.001216	0	0
ZBTB7B	51043	broad.mit.edu	37	1	154987748	154987748	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:154987748C>T	uc001fgk.3	+	3	770	c.612C>T	c.(610-612)CCC>CCT	p.P204P	ZBTB7B_uc009wpa.2_Silent_p.P204P|ZBTB7B_uc001fgj.3_Silent_p.P238P|ZBTB7B_uc010peq.1_Silent_p.P238P|ZBTB7B_uc001fgl.3_Silent_p.P204P	NM_015872	NP_056956	O15156	ZBT7B_HUMAN	zinc finger and BTB domain containing 7B	204					cell differentiation|ectoderm development|multicellular organismal development|regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	DNA binding|zinc ion binding				0	all_epithelial(22;2.77e-30)|all_lung(78;4.1e-28)|all_hematologic(923;0.0359)|Hepatocellular(266;0.0877)		BRCA - Breast invasive adenocarcinoma(34;0.00034)			GCCGCAAGCCCCGGAAAGCTT	0.652000													18	20					0	0	0.002299	0	0
GON4L	54856	broad.mit.edu	37	1	155735878	155735878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:155735878G>A	uc001flz.2	-	21	3483	c.3386C>T	c.(3385-3387)CCC>CTC	p.P1129L	GON4L_uc009wrg.1_RNA|GON4L_uc001fly.1_Missense_Mutation_p.P1129L|GON4L_uc009wrh.1_Missense_Mutation_p.P1129L|GON4L_uc001fma.1_Missense_Mutation_p.P1129L|GON4L_uc001fmb.3_Missense_Mutation_p.P325L|GON4L_uc001fmc.2_Missense_Mutation_p.P1129L|GON4L_uc001fmd.3_Missense_Mutation_p.P1129L|GON4L_uc009wri.2_Missense_Mutation_p.P715L	NM_001037533	NP_001032622	Q3T8J9	GON4L_HUMAN	gon-4-like isoform a	1129					regulation of transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(3)	3	Hepatocellular(266;0.0997)|all_hematologic(923;0.145)|all_neural(408;0.195)					TTTCATACAGGGAGAGGCCTT	0.527000													11	66					0	0	0.001855	0	0
NES	10763	broad.mit.edu	37	1	156639485	156639485	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:156639485C>T	uc001fpq.2	-	4	4628	c.4495G>A	c.(4495-4497)GAG>AAG	p.E1499K		NM_006617	NP_006608	P48681	NEST_HUMAN	nestin	1499	Tail.				brain development|embryonic camera-type eye development|G2/M transition of mitotic cell cycle|negative regulation of apoptosis|positive regulation of intermediate filament depolymerization|positive regulation of neural precursor cell proliferation|stem cell proliferation	cytoplasm|intermediate filament	intermediate filament binding|structural molecule activity			ovary(6)	6	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					GACTCTTCCTCTGAGCCAGAA	0.612000													27	34					0	0	0.003271	0	0
OR10X1	128367	broad.mit.edu	37	1	158549379	158549379	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:158549379T>C	uc010pin.1	-	1	311	c.311A>G	c.(310-312)AAG>AGG	p.K104R		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	104	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					GCTTCTGTCCTTGGCCAGTAG	0.478000													13	9					0	0	0.001855	0	0
OR6K3	391114	broad.mit.edu	37	1	158687162	158687162	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:158687162C>T	uc010pip.1	-	1	792	c.792G>A	c.(790-792)CTG>CTA	p.L264L		NM_001005327	NP_001005327	Q8NGY3	OR6K3_HUMAN	olfactory receptor, family 6, subfamily K,	264	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|kidney(1)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CAAAGAATATCGGGAAGACCA	0.453000													3	1					0	0	0.004672	0	0
GORAB	92344	broad.mit.edu	37	1	170508353	170508353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:170508353C>T	uc001gha.2	+	2	166	c.139C>T	c.(139-141)CCA>TCA	p.P47S	GORAB_uc009wvw.2_Silent_p.I109I|GORAB_uc001ggz.3_Missense_Mutation_p.P47S|GORAB_uc009wvx.2_5'UTR|GORAB_uc001ghb.2_5'UTR|GORAB_uc001ghc.2_5'UTR	NM_152281	NP_689494	Q5T7V8	GORAB_HUMAN	golgin, RAB6-interacting isoform a	47						Golgi apparatus|nucleus					0						TTACATAGATCCATTTGAACC	0.363000													29	7					0	0	0.001512	0	0
FMO3	2328	broad.mit.edu	37	1	171083218	171083218	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:171083218A>C	uc001ghi.2	+	7	1010	c.899A>C	c.(898-900)AAG>ACG	p.K300T	FMO3_uc001ghh.2_Missense_Mutation_p.K300T|FMO3_uc010pmb.1_Missense_Mutation_p.K280T|FMO3_uc010pmc.1_Missense_Mutation_p.K237T	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	300					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTGTCCGTAAAGCCTAACGTG	0.438000													7	4					0	0	0.004482	0	0
CACNA1E	777	broad.mit.edu	37	1	181689945	181689945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:181689945C>T	uc001gow.2	+	15	2075	c.1910C>T	c.(1909-1911)TCG>TTG	p.S637L	CACNA1E_uc009wxs.2_Missense_Mutation_p.S544L	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	637	Extracellular (Potential).|II.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGGACTCCTTCGGCAAATTTT	0.433000													6	9					0	0	0.003080	0	0
C1orf106	55765	broad.mit.edu	37	1	200880585	200880585	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:200880585G>A	uc001gvo.2	+	9	1249	c.1219G>A	c.(1219-1221)GAT>AAT	p.D407N	C1orf106_uc010ppm.1_Missense_Mutation_p.D322N	NM_018265	NP_060735	Q3KP66	CA106_HUMAN	hypothetical protein LOC55765 isoform 1	407										skin(2)|ovary(1)	3						CTTCAGGGTGGATTCCTTCCG	0.632000													93	91					0	0	0.003610	0	0
RPS6KC1	26750	broad.mit.edu	37	1	213341253	213341254	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:213341253_213341254CC>TT	uc010ptr.1	+	7	1047_1048	c.888_889CC>TT	c.(886-891)TACCTC>TATTTC	p.L297F	RPS6KC1_uc001hkd.2_Missense_Mutation_p.L285F|RPS6KC1_uc010pts.1_Missense_Mutation_p.L116F|RPS6KC1_uc010ptt.1_Missense_Mutation_p.L116F|RPS6KC1_uc010ptu.1_Missense_Mutation_p.L116F|RPS6KC1_uc010ptv.1_5'UTR|RPS6KC1_uc001hke.2_Missense_Mutation_p.L116F	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	297	MIT.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		CAGCCGAGTACCTCATGCGGGC	0.401000													14	18					0	0	0.004672	0	0
C1orf55	163859	broad.mit.edu	37	1	226175730	226175730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:226175730G>A	uc001hpu.3	-	6	1054	c.1001C>T	c.(1000-1002)CCC>CTC	p.P334L	C1orf55_uc001hpv.2_Missense_Mutation_p.P334L	NM_152608	NP_689821	Q6IQ49	CA055_HUMAN	hypothetical protein LOC163859	334										lung(1)	1	Breast(184;0.197)					AGCCCCAGTGGGCTCCTCTTC	0.493000													74	49					0	0	0.003610	0	0
NID1	4811	broad.mit.edu	37	1	236187465	236187465	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:236187465C>T	uc001hxo.2	-	9	2135	c.2033G>A	c.(2032-2034)GGG>GAG	p.G678E	NID1_uc009xgd.2_Missense_Mutation_p.G678E	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	678	EGF-like 2.				cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	GGTGTCACACCCATGAGTGCC	0.577000													23	23					0	0	0.002780	0	0
ZP4	57829	broad.mit.edu	37	1	238051726	238051726	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:238051726C>T	uc001hym.2	-	4	485	c.485G>A	c.(484-486)GGA>GAA	p.G162E	LOC100130331_uc010pyc.1_Intron	NM_021186	NP_067009	Q12836	ZP4_HUMAN	zona pellucida glycoprotein 4 preproprotein	162	P-type.|Extracellular (Potential).				acrosomal vesicle exocytosis|negative regulation of binding of sperm to zona pellucida|positive regulation of acrosome reaction|positive regulation of humoral immune response|positive regulation of protein kinase activity|positive regulation of T cell proliferation|protein kinase A signaling cascade|protein kinase C signaling cascade	integral to membrane|intracellular|plasma membrane|proteinaceous extracellular matrix	acrosin binding|receptor activity			ovary(2)|skin(1)	3	Ovarian(103;0.103)	all_cancers(173;0.00175)|all_epithelial(177;0.162)|all_neural(198;0.164)|Melanoma(53;0.211)|Prostate(94;0.214)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)			TTCACAGTCTCCTCGAGAGAT	0.507000													53	12					0	0	0.003610	0	0
PIP4K2A	5305	broad.mit.edu	37	10	22880653	22880653	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:22880653G>A	uc001irl.3	-	4	645	c.397C>T	c.(397-399)CGT>TGT	p.R133C	PIP4K2A_uc010qcu.1_5'UTR	NM_005028	NP_005019	P48426	PI42A_HUMAN	phosphatidylinositol-5-phosphate 4-kinase, type	133	PIPK.						1-phosphatidylinositol-4-phosphate 5-kinase activity|1-phosphatidylinositol-5-phosphate 4-kinase activity|ATP binding			ovary(1)|skin(1)	2						GTGTGAAAACGAGCTCCACTG	0.532000													27	9					0	0	0.004656	0	0
KIAA1217	56243	broad.mit.edu	37	10	24817015	24817015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:24817015G>A	uc001iru.3	+	14	3452	c.3049G>A	c.(3049-3051)GGA>AGA	p.G1017R	KIAA1217_uc001irs.2_Missense_Mutation_p.G937R|KIAA1217_uc001irt.3_Missense_Mutation_p.G982R|KIAA1217_uc010qcy.1_Missense_Mutation_p.G982R|KIAA1217_uc010qcz.1_Missense_Mutation_p.G982R|KIAA1217_uc010qda.1_RNA|KIAA1217_uc001irw.2_Missense_Mutation_p.G700R|KIAA1217_uc001irz.2_Missense_Mutation_p.G700R|KIAA1217_uc001irx.2_Missense_Mutation_p.G700R|KIAA1217_uc001iry.2_Missense_Mutation_p.G700R	NM_019590	NP_062536	Q5T5P2	SKT_HUMAN	sickle tail isoform 1	1017					embryonic skeletal system development	cytoplasm				ovary(5)|skin(2)	7						ACTGCCAAGGGGAGATGCCCC	0.512000													34	9					0	0	0.002836	0	0
GPR158	57512	broad.mit.edu	37	10	25886796	25886796	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:25886796G>A	uc001isj.2	+	11	2301	c.2241G>A	c.(2239-2241)AAG>AAA	p.K747K	GPR158_uc001isk.2_Silent_p.K122K	NM_020752	NP_065803	Q5T848	GP158_HUMAN	G protein-coupled receptor 158 precursor	747	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(4)|large_intestine(2)|pancreas(1)|skin(1)	8						GGTGCTCGAAGAAGGGCCTAG	0.512000													13	4					0	0	0.004007	0	0
PPYR1	5540	broad.mit.edu	37	10	47086993	47086993	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:47086993G>A	uc001jee.2	+	3	629	c.210G>A	c.(208-210)AAG>AAA	p.K70K	ANXA8_uc001jed.3_Intron|PPYR1_uc009xna.2_Silent_p.K70K	NM_005972	NP_005963	P50391	NPY4R_HUMAN	pancreatic polypeptide receptor 1	70	Cytoplasmic (Potential).				blood circulation|digestion|feeding behavior	integral to plasma membrane				ovary(1)|skin(1)	2						TGAGGCAGAAGGAGAAAGCCA	0.567000													34	67					0	0	0.004878	0	0
Unknown	0	broad.mit.edu	37	10	49218553	49218553	+	Missense_Mutation	SNP	T	C	C	rs77581903		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:49218553T>C	uc001jgd.2	-	8	1745	c.1586A>G	c.(1585-1587)CAT>CGT	p.H529R	uc001jge.1_5'Flank					RecName: Full=Arf-GAP, GTPase, ANK repeat and PH domain-containing protein 11; AltName: Full=Centaurin-gamma-like protein KIAA1975;																		ATATTTGGAATGGATCCAGCG	0.567000													4	19					0	0	0.001168	0	0
TET1	80312	broad.mit.edu	37	10	70404931	70404931	+	Silent	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:70404931T>C	uc001jok.3	+	4	2950	c.2445T>C	c.(2443-2445)CAT>CAC	p.H815H		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	815					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						GTTGTGATCATCTCAAGGGGA	0.388000													49	22					0	0	0.003610	0	0
ACTA2	59	broad.mit.edu	37	10	90697976	90697976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:90697976C>T	uc001kfp.2	-	8	948	c.832G>A	c.(832-834)GAA>AAA	p.E278K	STAMBPL1_uc010qmx.1_Intron|ACTA2_uc010qmy.1_Missense_Mutation_p.E233K|ACTA2_uc001kfq.2_Missense_Mutation_p.E278K|uc001kfo.1_RNA	NM_001613	NP_001604	P62736	ACTA_HUMAN	alpha 2 actin	278					response to virus	cytosol	ATP binding				0		Colorectal(252;0.0161)		Colorectal(12;0.000123)|COAD - Colon adenocarcinoma(12;0.00018)		TAGGTGGTTTCATGGATGCCA	0.483000													20	9					0	0	0.002299	0	0
CYP2C8	1558	broad.mit.edu	37	10	96796988	96796988	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:96796988T>A	uc001kkb.2	-	9	1465	c.1370A>T	c.(1369-1371)AAC>ATC	p.N457I	CYP2C8_uc001kkc.2_RNA|CYP2C8_uc010qoa.1_Missense_Mutation_p.N387I|CYP2C8_uc010qob.1_Missense_Mutation_p.N371I|CYP2C8_uc010qoc.1_Missense_Mutation_p.N355I	NM_000770	NP_000761	P10632	CP2C8_HUMAN	cytochrome P450, family 2, subfamily C,	457					exogenous drug catabolic process|organic acid metabolic process|oxidative demethylation|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|caffeine oxidase activity|electron carrier activity|heme binding|oxygen binding				0		Colorectal(252;0.0397)		all cancers(201;6.21e-05)	Aminophenazone(DB01424)|Amiodarone(DB01118)|Amodiaquine(DB00613)|Benzphetamine(DB00865)|Carbamazepine(DB00564)|Cerivastatin(DB00439)|Diclofenac(DB00586)|Fluvastatin(DB01095)|Fosphenytoin(DB01320)|Gemfibrozil(DB01241)|Ketoconazole(DB01026)|Lapatinib(DB01259)|Lovastatin(DB00227)|Midazolam(DB00683)|Montelukast(DB00471)|Nicardipine(DB00622)|Paclitaxel(DB01229)|Phenytoin(DB00252)|Pioglitazone(DB01132)|Repaglinide(DB00912)|Rifampin(DB01045)|Rosiglitazone(DB00412)|Simvastatin(DB00641)|Sitagliptin(DB01261)|Tolbutamide(DB01124)|Torasemide(DB00214)|Tretinoin(DB00755)|Trimethoprim(DB00440)|Warfarin(DB00682)|Zafirlukast(DB00549)|Zopiclone(DB01198)	AGATTTCAGGTTAAAGTTCTG	0.393000													14	5					0	0	0.001855	0	0
SORBS1	10580	broad.mit.edu	37	10	97096854	97096854	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:97096854G>A	uc001kkp.2	-	28	3108	c.3063C>T	c.(3061-3063)CTC>CTT	p.L1021L	SORBS1_uc001kkk.2_Intron|SORBS1_uc001kkl.2_Intron|SORBS1_uc001kkn.2_Intron|SORBS1_uc001kkm.2_Intron|SORBS1_uc001kko.2_Intron|SORBS1_uc001kkq.2_Intron|SORBS1_uc001kkr.2_Intron|SORBS1_uc001kks.2_Intron|SORBS1_uc001kkt.2_Intron|SORBS1_uc001kku.2_Intron|SORBS1_uc001kkv.2_Intron|SORBS1_uc001kkw.2_Silent_p.L975L|SORBS1_uc010qoe.1_Intron	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1021					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		GTGACAAGGCGAGGTGGTCAG	0.607000													20	10					0	0	0.001882	0	0
CYP17A1	1586	broad.mit.edu	37	10	104595029	104595029	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:104595029G>C	uc001kwg.2	-	2	590	c.418C>G	c.(418-420)CAG>GAG	p.Q140E		NM_000102	NP_000093	P05093	CP17A_HUMAN	cytochrome P450, family 17	140					androgen biosynthetic process|glucocorticoid biosynthetic process|sex differentiation|xenobiotic metabolic process	endoplasmic reticulum membrane	electron carrier activity|heme binding|oxygen binding|steroid 17-alpha-monooxygenase activity				0		Colorectal(252;0.122)|all_hematologic(284;0.152)		Epithelial(162;3.93e-09)|all cancers(201;1.02e-07)|BRCA - Breast invasive adenocarcinoma(275;0.215)	NADH(DB00157)|Progesterone(DB00396)	TCCAGCTTCTGATCGCCATCC	0.622000											OREG0020487	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	70					0	0	0.000248	0	0
SORCS3	22986	broad.mit.edu	37	10	106983007	106983007	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:106983007G>A	uc001kyi.1	+	20	3095	c.2868G>A	c.(2866-2868)AAG>AAA	p.K956K	SORCS3_uc010qqz.1_RNA	NM_014978	NP_055793	Q9UPU3	SORC3_HUMAN	VPS10 domain receptor protein SORCS 3 precursor	956	Lumenal (Potential).					integral to membrane	neuropeptide receptor activity			ovary(6)|skin(3)|central_nervous_system(1)	10		Colorectal(252;0.134)|Breast(234;0.142)|Lung NSC(174;0.191)		Epithelial(162;1.58e-07)|all cancers(201;1.02e-05)|BRCA - Breast invasive adenocarcinoma(275;0.0628)		ATAGCACAAAGGTTTGGCCCT	0.453000													29	28					0	0	0.002445	0	0
TDRD1	56165	broad.mit.edu	37	10	115971703	115971703	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:115971703G>A	uc001lbg.1	+	14	1892	c.1739G>A	c.(1738-1740)GGA>GAA	p.G580E	TDRD1_uc001lbf.2_Intron|TDRD1_uc001lbh.1_Missense_Mutation_p.G571E|TDRD1_uc001lbi.1_Missense_Mutation_p.G571E|TDRD1_uc010qsc.1_Intron|TDRD1_uc001lbj.2_Missense_Mutation_p.G289E	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	580	Tudor 2.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		GTAGATTATGGAAACTTTGAA	0.403000													15	5					0	0	0.002450	0	0
KIAA1598	57698	broad.mit.edu	37	10	118711438	118711438	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:118711438G>A	uc009xyw.2	-	6	1014	c.516C>T	c.(514-516)CTC>CTT	p.L172L	KIAA1598_uc001lcz.3_Silent_p.L172L|KIAA1598_uc010qso.1_Silent_p.L112L|KIAA1598_uc010qsp.1_Silent_p.L172L|KIAA1598_uc010qsq.1_Silent_p.L112L|KIAA1598_uc001lcy.3_Silent_p.L142L	NM_001127211	NP_001120683	A0MZ66	SHOT1_HUMAN	shootin1 isoform a	172	Potential.				axon guidance	axon					0				all cancers(201;0.00494)		TTACTTCTACGAGTTTGCTCT	0.343000													16	6					0	0	0.004990	0	0
TACC2	10579	broad.mit.edu	37	10	123843518	123843518	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:123843518G>A	uc001lfv.2	+	4	1863	c.1503G>A	c.(1501-1503)TTG>TTA	p.L501L	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Silent_p.L501L|TACC2_uc010qtv.1_Silent_p.L501L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	501	Pro-rich.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GAGAGCACTTGAACACGGAGC	0.602000													64	21					0	0	0.003610	0	0
JAKMIP3	282973	broad.mit.edu	37	10	133963531	133963531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr10:133963531G>A	uc001lkx.3	+	15	1993	c.1993G>A	c.(1993-1995)GAT>AAT	p.D665N	JAKMIP3_uc009yba.1_Missense_Mutation_p.D102N	NM_001105521	NP_001098991			Janus kinase and microtubule interacting protein											breast(1)	1		all_cancers(35;5.63e-09)|all_epithelial(44;9.25e-07)|Lung NSC(174;0.0108)|all_lung(145;0.0173)|Colorectal(31;0.0721)|all_neural(114;0.0726)|Breast(234;0.0949)|Glioma(114;0.172)|Melanoma(40;0.175)		OV - Ovarian serous cystadenocarcinoma(35;0.000104)|Epithelial(32;0.000142)|all cancers(32;0.000185)|BRCA - Breast invasive adenocarcinoma(275;0.224)		CATCCTGGGCGATAACGCCGT	0.592000													5	7					0	0	0.001984	0	0
OR52M1	119772	broad.mit.edu	37	11	4566960	4566960	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:4566960C>T	uc010qyf.1	+	1	540	c.540C>T	c.(538-540)TCC>TCT	p.S180S		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	180	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		TCTCCCACTCCTACTGTGAGC	0.527000													37	29					0	0	0.001287	0	0
OR51S1	119692	broad.mit.edu	37	11	4870293	4870293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:4870293C>T	uc010qyo.1	-	1	146	c.146G>A	c.(145-147)GGA>GAA	p.G49E		NM_001004758	NP_001004758	Q8NGJ8	O51S1_HUMAN	olfactory receptor, family 51, subfamily S,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|upper_aerodigestive_tract(1)|ovary(1)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		GGTGCCATTTCCCAGTGCAGA	0.567000													20	19					0	0	0.001216	0	0
UBQLN3	50613	broad.mit.edu	37	11	5529150	5529150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:5529150G>A	uc001may.1	-	2	1725	c.1639C>T	c.(1639-1641)CCT>TCT	p.P547S	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_5'Flank|OR51B5_uc001maq.1_5'Flank	NM_017481	NP_059509	Q9H347	UBQL3_HUMAN	ubiquilin 3	547										ovary(3)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		GCTAGGCAAGGCATGAACCAG	0.567000													14	22					0	0	0.002450	0	0
OR56A5	390084	broad.mit.edu	37	11	5988832	5988832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:5988832C>T	uc010qzu.1	-	1	893	c.893G>A	c.(892-894)AGA>AAA	p.R298K		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	298	Cytoplasmic (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						CTCCTTGGTTCTCACACCATA	0.463000													12	10					0	0	0.004007	0	0
LDHC	3948	broad.mit.edu	37	11	18472604	18472604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:18472604C>T	uc001mon.3	+	8	1041	c.929C>T	c.(928-930)TCT>TTT	p.S310F	LDHC_uc001mom.3_Missense_Mutation_p.S310F|LDHC_uc009yhp.2_3'UTR|LDHC_uc001moo.3_Missense_Mutation_p.S194F|LDHC_uc009yhq.2_RNA|LDHC_uc009yhr.2_3'UTR	NM_017448	NP_059144	P07864	LDHC_HUMAN	L-lactate dehydrogenase C	310					glycolysis	cytoplasm	binding|L-lactate dehydrogenase activity				0					NADH(DB00157)	AACTTGAATTCTGAGGAGGAG	0.368000													37	101					0	0	0.001951	0	0
MRGPRX1	259249	broad.mit.edu	37	11	18955651	18955651	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:18955651G>A	uc001mpg.2	-	1	899	c.681C>T	c.(679-681)CTC>CTT	p.L227L		NM_147199	NP_671732	Q96LB2	MRGX1_HUMAN	MAS-related GPR, member X1	227	Helical; Name=6; (Potential).				acute-phase response	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(2)|central_nervous_system(1)	3						GCAGGCCACAGAGGAGGAAGA	0.488000													10	24					0	0	0.000443	0	0
NELL1	4745	broad.mit.edu	37	11	20968909	20968909	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:20968909A>T	uc001mqe.2	+	11	1252	c.1099A>T	c.(1099-1101)ATG>TTG	p.M367L	NELL1_uc001mqf.2_Missense_Mutation_p.M367L|NELL1_uc009yid.2_Missense_Mutation_p.M395L|NELL1_uc010rdo.1_Missense_Mutation_p.M310L|NELL1_uc010rdp.1_Missense_Mutation_p.M127L	NM_006157	NP_006148	Q92832	NELL1_HUMAN	nel-like 1 isoform 1 precursor	367	VWFC 2.				cell adhesion|nervous system development	extracellular region	calcium ion binding|structural molecule activity			ovary(2)|large_intestine(1)	3						AATTACAGAAATGTGTCCTCC	0.408000													20	47					0	0	0.001216	0	0
PAX6	5080	broad.mit.edu	37	11	31815095	31815095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:31815095G>A	uc001mtd.3	-	10	1813	c.923C>T	c.(922-924)TCC>TTC	p.S308F	PAX6_uc001mte.3_Missense_Mutation_p.S308F|PAX6_uc001mtg.3_Missense_Mutation_p.S322F|PAX6_uc001mtf.3_Missense_Mutation_p.S308F|PAX6_uc001mth.3_Missense_Mutation_p.S308F|PAX6_uc009yjr.2_Missense_Mutation_p.S308F	NM_001127612	NP_001121084	P26367	PAX6_HUMAN	paired box gene 6 isoform a	308	Pro/Ser/Thr-rich.				blood vessel development|central nervous system development|cornea development in camera-type eye|glucose homeostasis|iris morphogenesis|negative regulation of neurogenesis|neuron fate commitment|pancreatic A cell development|positive regulation of transcription, DNA-dependent|response to wounding|visual perception	cytoplasm|nuclear chromatin	R-SMAD binding|RNA polymerase II core promoter sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|ubiquitin-protein ligase activity			lung(4)|ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	9	Lung SC(675;0.225)					AGATGTGAAGGAGGAAACTGA	0.488000									Wilms_tumor-Aniridia-ambiguous_Genitals-mental_Retardation				22	52					0	0	0.001523	0	0
OR4C12	283093	broad.mit.edu	37	11	50003708	50003708	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:50003708G>A	uc010ria.1	-	1	330	c.330C>T	c.(328-330)ATC>ATT	p.I110I		NM_001005270	NP_001005270	Q96R67	OR4CC_HUMAN	olfactory receptor, family 4, subfamily C,	110	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3						TCAGCAGGATGATCTCAGTAG	0.458000													45	36					0	0	0.003610	0	0
LOC441601	441601	broad.mit.edu	37	11	50252703	50252703	+	RNA	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:50252703A>G	uc001nhd.2	-	3		c.483T>C				NR_003034				Homo sapiens septin 7 pseudogene, transcript variant 2, mRNA (cDNA clone IMAGE:5265802).												0						AGTATGAACAACACTGCACCC	0.398000													23	58					0	0	0.003330	0	0
OR4A5	81318	broad.mit.edu	37	11	51412063	51412063	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:51412063G>A	uc001nhi.1	-	1	333	c.333C>T	c.(331-333)TTC>TTT	p.F111F		NM_001005272	NP_001005272	Q8NH83	OR4A5_HUMAN	olfactory receptor, family 4, subfamily A,	111	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3		all_lung(304;0.236)				CCACCAGAAGGAAGACCTCAG	0.453000													4	5					0	0	0.000248	0	0
OR5L2	26338	broad.mit.edu	37	11	55595541	55595541	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:55595541C>T	uc001nhy.1	+	1	847	c.847C>T	c.(847-849)CCC>TCC	p.P283S		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	283	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				AGTTGTGATTCCCATGCTGAA	0.453000										HNSCC(27;0.073)			8	8					0	0	0.003080	0	0
SCGB1D1	10648	broad.mit.edu	37	11	61959560	61959560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:61959560G>A	uc001nsz.1	+	2	135	c.88G>A	c.(88-90)GAA>AAA	p.E30K		NM_006552	NP_006543	O95968	SG1D1_HUMAN	lipophilin A precursor	30						extracellular space	binding			skin(1)	1						TCTTGGTTCTGAAATCACAGG	0.423000													26	15					0	0	0.001512	0	0
NXF1	10482	broad.mit.edu	37	11	62571402	62571402	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:62571402C>A	uc001nvf.1	-	2	213	c.77G>T	c.(76-78)CGG>CTG	p.R26L	NXF1_uc001nvg.1_Missense_Mutation_p.R26L|NXF1_uc009yog.1_Missense_Mutation_p.R69L|NXF1_uc010rmh.1_Intron	NM_006362	NP_006353	Q9UBU9	NXF1_HUMAN	nuclear RNA export factor 1 isoform 1	26	Interaction with THOC4.				gene expression|interspecies interaction between organisms	cytosol|nuclear speck	nucleotide binding|protein binding			skin(3)	3						GAAGGGACCCCGGCCTTTCTT	0.473000													6	231					0.00198382	0.00953706	0.001984	1	0
RAD9A	5883	broad.mit.edu	37	11	67163818	67163819	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:67163818_67163819GG>AA	uc001okr.2	+	9	912_913	c.819_820GG>AA	c.(817-822)CAGGAC>CAAAAC	p.D274N	RAD9A_uc001oks.2_Missense_Mutation_p.D131N	NM_004584	NP_004575	Q99638	RAD9A_HUMAN	RAD9 homolog	274	Sufficient for interaction with ABL1.				DNA damage checkpoint|DNA repair|DNA replication|DNA replication checkpoint	nucleoplasm	3'-5' exonuclease activity|exodeoxyribonuclease III activity|histone deacetylase binding|protein kinase binding|SH3 domain binding				0			BRCA - Breast invasive adenocarcinoma(15;8.53e-07)			CGCACTCCCAGGACCTGGGCTC	0.639000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					62	65					0	0	0.004672	0	0
PRKRIR	5612	broad.mit.edu	37	11	76063443	76063443	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:76063443G>A	uc001oxh.1	-	5	751	c.751C>T	c.(751-753)CTC>TTC	p.L251F	PRKRIR_uc010rrz.1_Missense_Mutation_p.L76F	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	251					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						ACTTCCCTGAGAGTTTCTTCT	0.448000													25	22					0	0	0.002096	0	0
ODZ4	26011	broad.mit.edu	37	11	78412905	78412905	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:78412905C>T	uc001ozl.3	-	28	5216	c.4753G>A	c.(4753-4755)GAG>AAG	p.E1585K	ODZ4_uc009yvb.1_Missense_Mutation_p.E169K	NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1585	Extracellular (Potential).|YD 1.				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AGATAGAGCTCCTGGTCAATT	0.522000													60	57					0	0	0.003610	0	0
DYNC2H1	79659	broad.mit.edu	37	11	103027443	103027443	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:103027443C>T	uc001pho.2	+	26	4215	c.4071C>T	c.(4069-4071)GGC>GGT	p.G1357G	DYNC2H1_uc001phn.1_Silent_p.G1357G|DYNC2H1_uc009yxe.1_Intron	NM_001080463	NP_001073932	Q8NCM8	DYHC2_HUMAN	dynein, cytoplasmic 2, heavy chain 1	1357	Stem (By similarity).				cell projection organization|Golgi organization|microtubule-based movement|multicellular organismal development	cilium axoneme|dynein complex|Golgi apparatus|microtubule|plasma membrane	ATP binding|ATPase activity|microtubule motor activity				0		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.00348)		BRCA - Breast invasive adenocarcinoma(274;0.000177)|Epithelial(105;0.0785)		CCATTTTCGGCCGTGGAGCAT	0.363000													12	21					0	0	0.001368	0	0
BCL9L	283149	broad.mit.edu	37	11	118769362	118769362	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:118769362A>G	uc001pug.2	-	8	5227	c.4262T>C	c.(4261-4263)ATG>ACG	p.M1421T	BCL9L_uc009zal.2_Missense_Mutation_p.M1416T	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	1421					negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		TGGAGGGGACATGACCCCCTG	0.642000													19	18					0	0	0.001882	0	0
C2CD2L	9854	broad.mit.edu	37	11	118981290	118981290	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:118981290C>T	uc001pvo.2	+	3	829	c.470C>T	c.(469-471)TCT>TTT	p.S157F	DPAGT1_uc010ryz.1_5'Flank|C2CD2L_uc001pvn.2_Missense_Mutation_p.S157F	NM_014807	NP_055622	O14523	C2C2L_HUMAN	transmembrane protein 24	157						integral to membrane					0						TGCCAGCTCTCTGCTGAGGAG	0.612000													8	8					0	0	0.004482	0	0
TECTA	7007	broad.mit.edu	37	11	121016263	121016263	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:121016263G>A	uc010rzo.1	+	11	3544	c.3544_splice	c.e11-1	p.V1182_splice		NM_005422	NP_005413	O75443	TECTA_HUMAN	tectorin alpha precursor						cell-matrix adhesion|sensory perception of sound	anchored to membrane|plasma membrane|proteinaceous extracellular matrix				breast(6)|ovary(2)|skin(2)	10	all_hematologic(175;0.208)	Breast(109;0.000766)|Medulloblastoma(222;0.0427)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;8.04e-06)|OV - Ovarian serous cystadenocarcinoma(223;0.166)		TCCTCTTACAGGTCAACAGTG	0.498000													71	194					0	0	0.003610	0	0
OR6X1	390260	broad.mit.edu	37	11	123624487	123624487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:123624487G>A	uc010rzy.1	-	1	740	c.740C>T	c.(739-741)TCC>TTC	p.S247F		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	247	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		GTAGAGCAGGGAGACAACTGT	0.468000													6	27					0	0	0.001984	0	0
OR8D4	338662	broad.mit.edu	37	11	123777295	123777295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:123777295C>T	uc010saa.1	+	1	157	c.157C>T	c.(157-159)CGT>TGT	p.R53C		NM_001005197	NP_001005197	Q8NGM9	OR8D4_HUMAN	olfactory receptor, family 8, subfamily D,	53	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.93e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0409)		TAGGCTGAATCGTCAACTTCA	0.408000													9	28					0	0	0.004482	0	0
OR6T1	219874	broad.mit.edu	37	11	123813896	123813896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:123813896G>A	uc010sab.1	-	1	650	c.650C>T	c.(649-651)TCC>TTC	p.S217F		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	217	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GCAGGCATAGGAAACTGAGGT	0.542000													16	9					0	0	0.004007	0	0
KCNJ1	3758	broad.mit.edu	37	11	128709694	128709694	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:128709694C>T	uc001qeo.1	-	2	553	c.502G>A	c.(502-504)GTT>ATT	p.V168I	KCNJ1_uc001qep.1_Missense_Mutation_p.V149I|KCNJ1_uc001qeq.1_Missense_Mutation_p.V149I|KCNJ1_uc001qer.1_Missense_Mutation_p.V149I|KCNJ1_uc001qes.1_Missense_Mutation_p.V149I	NM_000220	NP_000211	P48048	IRK1_HUMAN	potassium inwardly-rectifying channel J1 isoform	168	Helical; Name=M2; (By similarity).				excretion	voltage-gated potassium channel complex	ATP binding|inward rectifier potassium channel activity			ovary(3)|breast(1)	4	all_hematologic(175;0.0641)	all_lung(97;4.89e-06)|Lung NSC(97;9.34e-06)|Breast(109;0.00123)|all_hematologic(192;0.00793)|Renal(330;0.0112)|all_neural(223;0.0189)|Medulloblastoma(222;0.0425)		OV - Ovarian serous cystadenocarcinoma(99;4.05e-06)|LUSC - Lung squamous cell carcinoma(976;0.008)|Lung(977;0.00942)	Acetohexamide(DB00414)|Chlorpropamide(DB00672)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Glimepiride(DB00222)|Glipizide(DB01067)|Glycodiazine(DB01382)|Minoxidil(DB00350)|Nateglinide(DB00731)|Repaglinide(DB00912)|Tolazamide(DB00839)|Tolbutamide(DB01124)	TTGATTATAACTCCAAGTATA	0.443000													27	25					0	0	0.004656	0	0
IGSF9B	22997	broad.mit.edu	37	11	133790092	133790092	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:133790092C>T	uc001qgx.3	-	18	3759	c.3528G>A	c.(3526-3528)CGG>CGA	p.R1176R		NM_014987	NP_055802	Q9UPX0	TUTLB_HUMAN	immunoglobulin superfamily, member 9B	1176	Pro-rich.|Cytoplasmic (Potential).					integral to membrane|plasma membrane					0	all_hematologic(175;0.127)	all_cancers(12;1.58e-21)|all_epithelial(12;5.17e-16)|all_lung(97;1.6e-05)|Lung NSC(97;3.86e-05)|Breast(109;0.000126)|Medulloblastoma(222;0.0245)|all_neural(223;0.0505)|Esophageal squamous(93;0.0559)		Epithelial(10;7.19e-10)|BRCA - Breast invasive adenocarcinoma(10;9.69e-09)|all cancers(11;1.23e-08)|OV - Ovarian serous cystadenocarcinoma(99;0.00328)|Lung(977;0.221)		TAGGCCGGGGCCGGGGCTGGG	0.701000													23	37					0	0	0.002299	0	0
Unknown	0	broad.mit.edu	37	12	92018	92018	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:92018T>C	uc010sdi.1	-	2	320	c.292A>G	c.(292-294)AGT>GGT	p.S98G	uc010sdj.1_RNA					SubName: Full=DEAD/H box polypeptide 11 like 11;																		GACTCCACACTCTCCTGGGTT	0.592000													3	3					0	0	0.004672	0	0
KDM5A	5927	broad.mit.edu	37	12	416948	416948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:416948G>A	uc001qif.1	-	23	3965	c.3602C>T	c.(3601-3603)TCC>TTC	p.S1201F	KDM5A_uc001qie.1_Missense_Mutation_p.S1201F	NM_001042603	NP_001036068	P29375	KDM5A_HUMAN	retinoblastoma binding protein 2 isoform 1	1201	PHD-type 2.				chromatin modification|multicellular organismal development|positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	cytoplasm|nucleolus	DNA binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)|ovary(1)	3						TTGCCAGCTGGATCCTTTTTT	0.463000			T 	NUP98	AML								21	12					0	0	0.002299	0	0
CACNA1C	775	broad.mit.edu	37	12	2693745	2693745	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:2693745G>A	uc009zdu.1	+	16	2614	c.2301G>A	c.(2299-2301)AAG>AAA	p.K767K	CACNA1C_uc009zdv.1_Silent_p.K764K|CACNA1C_uc001qkb.2_Silent_p.K767K|CACNA1C_uc001qkc.2_Silent_p.K767K|CACNA1C_uc001qke.2_Silent_p.K767K|CACNA1C_uc001qkf.2_Silent_p.K767K|CACNA1C_uc001qjz.2_Silent_p.K767K|CACNA1C_uc001qkd.2_Silent_p.K767K|CACNA1C_uc001qkg.2_Silent_p.K767K|CACNA1C_uc009zdw.1_Silent_p.K767K|CACNA1C_uc001qkh.2_Silent_p.K767K|CACNA1C_uc001qkl.2_Silent_p.K767K|CACNA1C_uc001qkn.2_Silent_p.K767K|CACNA1C_uc001qko.2_Silent_p.K767K|CACNA1C_uc001qkp.2_Silent_p.K767K|CACNA1C_uc001qkr.2_Silent_p.K767K|CACNA1C_uc001qku.2_Silent_p.K767K|CACNA1C_uc001qkq.2_Silent_p.K767K|CACNA1C_uc001qks.2_Silent_p.K767K|CACNA1C_uc001qkt.2_Silent_p.K767K|CACNA1C_uc001qka.1_Silent_p.K302K|CACNA1C_uc001qki.1_Silent_p.K503K|CACNA1C_uc001qkj.1_Silent_p.K503K|CACNA1C_uc001qkk.1_Silent_p.K503K|CACNA1C_uc001qkm.1_Silent_p.K503K|CACNA1C_uc001qkw.2_Silent_p.K56K	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	767	Cytoplasmic (Potential).				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	CTGCCCaaaaggaggaggaag	0.438000													31	14					0	0	0.002096	0	0
PLEKHA5	54477	broad.mit.edu	37	12	19511354	19511354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:19511354C>T	uc001reb.2	+	21	2919	c.2833C>T	c.(2833-2835)CCA>TCA	p.P945S	PLEKHA5_uc010sie.1_Missense_Mutation_p.P1106S|PLEKHA5_uc001rea.2_Missense_Mutation_p.P1003S|PLEKHA5_uc009zin.2_Missense_Mutation_p.P703S|PLEKHA5_uc010sif.1_Missense_Mutation_p.P934S|PLEKHA5_uc010sig.1_Missense_Mutation_p.P927S|PLEKHA5_uc010sih.1_Missense_Mutation_p.P900S|PLEKHA5_uc001rec.1_Missense_Mutation_p.P754S|PLEKHA5_uc009zio.2_Missense_Mutation_p.P211S	NM_019012	NP_061885	Q9HAU0	PKHA5_HUMAN	pleckstrin homology domain containing, family A	945							1-phosphatidylinositol binding|protein binding			ovary(1)|kidney(1)|skin(1)	3	Acute lymphoblastic leukemia(4;0.000455)|all_hematologic(4;0.00804)					AAGGGATAATCCATTTAGGAC	0.363000													24	8					0	0	0.001271	0	0
NELL2	4753	broad.mit.edu	37	12	44913970	44913970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:44913970C>T	uc001rog.2	-	19	2813	c.2218G>A	c.(2218-2220)GAG>AAG	p.E740K	NELL2_uc001rof.3_Missense_Mutation_p.E739K|NELL2_uc001roh.2_Missense_Mutation_p.E740K|NELL2_uc009zkd.2_Missense_Mutation_p.E692K|NELL2_uc010skz.1_Missense_Mutation_p.E790K|NELL2_uc010sla.1_Missense_Mutation_p.E763K	NM_001145108	NP_001138580	Q99435	NELL2_HUMAN	NEL-like protein 2 isoform b precursor	740	VWFC 4.				cell adhesion	extracellular region	calcium ion binding|protein binding|structural molecule activity			skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	4	Lung SC(27;0.192)	Lung NSC(34;0.144)		GBM - Glioblastoma multiforme(48;0.092)		AATTCACACTCCACATCTGGG	0.557000													10	0					0	0	0.000673	0	0
FMNL3	91010	broad.mit.edu	37	12	50044652	50044652	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:50044652G>A	uc001ruv.1	-	17	2041	c.1807C>T	c.(1807-1809)CTT>TTT	p.L603F	FMNL3_uc001ruw.1_Missense_Mutation_p.L552F|FMNL3_uc001rut.1_Missense_Mutation_p.L169F|FMNL3_uc001ruu.1_Missense_Mutation_p.L453F	NM_175736	NP_783863	Q8IVF7	FMNL3_HUMAN	formin-like 3 isoform 1	603	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			breast(2)|pancreas(2)	4						AACTTATCAAGATCCAGGTCC	0.512000													34	7					0	0	0.004878	0	0
SLC4A8	9498	broad.mit.edu	37	12	51883516	51883516	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:51883516G>A	uc001rys.1	+	19	2659	c.2481G>A	c.(2479-2481)ATG>ATA	p.M827I	SLC4A8_uc001rym.2_Missense_Mutation_p.M774I|SLC4A8_uc001ryn.2_Missense_Mutation_p.M774I|SLC4A8_uc001ryo.2_Missense_Mutation_p.M774I|SLC4A8_uc010snj.1_Missense_Mutation_p.M854I|SLC4A8_uc001ryr.2_Missense_Mutation_p.M827I	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	827	Helical; (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		ACCTACTGATGGTGGCCATCA	0.517000													47	8					0	0	0.003610	0	0
SLC4A8	9498	broad.mit.edu	37	12	51888839	51888839	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:51888839G>A	uc001rys.1	+	21	3058	c.2880G>A	c.(2878-2880)TTG>TTA	p.L960L	SLC4A8_uc001rym.2_Silent_p.L907L|SLC4A8_uc001ryn.2_Silent_p.L907L|SLC4A8_uc001ryo.2_Silent_p.L907L|SLC4A8_uc010snj.1_Silent_p.L987L|SLC4A8_uc001ryr.2_Silent_p.L960L	NM_001039960	NP_001035049	Q2Y0W8	S4A8_HUMAN	solute carrier family 4, sodium bicarbonate	960	Extracellular (Potential).				bicarbonate transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity			ovary(3)|pancreas(1)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(357;0.15)		TCATCCAGTTGACCTGTCTCG	0.483000													32	16					0	0	0.003755	0	0
C12orf63	374467	broad.mit.edu	37	12	97051808	97051808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:97051808C>T	uc001tet.1	+	4	602	c.524C>T	c.(523-525)TCT>TTT	p.S175F		NM_198520	NP_940922	Q6ZTY8	CL063_HUMAN	hypothetical protein LOC374467	175										skin(6)|ovary(1)	7						GTATTAAAATCTCTGGAAGTT	0.353000													41	21					0	0	0.002222	0	0
NOS1	4842	broad.mit.edu	37	12	117715816	117715816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:117715816G>A	uc001twm.1	-	9	2298	c.1612C>T	c.(1612-1614)CTC>TTC	p.L538F		NM_000620	NP_000611	P29475	NOS1_HUMAN	nitric oxide synthase 1, neuronal	538					multicellular organismal response to stress|myoblast fusion|negative regulation of calcium ion transport into cytosol|neurotransmitter biosynthetic process|nitric oxide biosynthetic process|platelet activation|positive regulation of vasodilation|regulation of cardiac muscle contraction|response to heat|response to hypoxia	cytoskeleton|cytosol|dendritic spine|perinuclear region of cytoplasm|photoreceptor inner segment|sarcolemma|sarcoplasmic reticulum	arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			ovary(3)|skin(3)|pancreas(1)	7	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.0561)	L-Citrulline(DB00155)	ATCTGGAAGAGCTCAGGGTCA	0.592000													37	17					0	0	0.001706	0	0
RNF10	9921	broad.mit.edu	37	12	120990331	120990331	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:120990331C>T	uc001typ.3	+	3	867	c.384C>T	c.(382-384)AGC>AGT	p.S128S	RNF10_uc010szk.1_RNA|RNF10_uc001tyq.3_Silent_p.S34S	NM_014868	NP_055683	Q8N5U6	RNF10_HUMAN	ring finger protein 10	128	Interaction with MEOX2.				negative regulation of Schwann cell proliferation|positive regulation of myelination|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	cytoplasm|nucleus	protein binding|transcription regulatory region DNA binding|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					CAGAGTTTAGCCCTGCCCAGT	0.453000													33	11					0	0	0.001287	0	0
UNC119B	84747	broad.mit.edu	37	12	121154827	121154827	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:121154827C>A	uc001tyz.2	+	4	1072	c.625C>A	c.(625-627)CAG>AAG	p.Q209K		NM_001080533	NP_001074002	A6NIH7	U119B_HUMAN	unc-119 homolog B	209										haematopoietic_and_lymphoid_tissue(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					TGAGTTTCCCCAGCTTTCGGA	0.473000													264	93					5.36533e-145	2.6469e-144	0.003610	1	0
EP400	57634	broad.mit.edu	37	12	132547093	132547093	+	Silent	SNP	A	G	G	rs28513925	by1000genomes	TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr12:132547093A>G	uc001ujn.2	+	46	8216	c.8181A>G	c.(8179-8181)CAA>CAG	p.Q2727Q	EP400_uc001ujl.2_Silent_p.Q2726Q|EP400_uc001ujm.2_Silent_p.Q2646Q|EP400_uc001ujp.2_5'UTR	NM_015409	NP_056224	Q96L91	EP400_HUMAN	E1A binding protein p400	2763	Poly-Gln.|Interaction with ZNF42 (By similarity).				histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent	NuA4 histone acetyltransferase complex|nuclear speck	ATP binding|DNA binding|helicase activity			central_nervous_system(4)|ovary(3)|breast(3)|skin(2)	12	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.198)		OV - Ovarian serous cystadenocarcinoma(86;3.01e-08)|Epithelial(86;3.43e-07)|all cancers(50;2.01e-06)		agcagcaacaacagcagcagc	0.294000													3	47					0	0	0.004672	0	0
LOC284232	284232	broad.mit.edu	37	13	19433041	19433041	+	RNA	SNP	T	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr13:19433041T>A	uc010tcj.1	-	1		c.13069A>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						ACAATGAAAATGAGCAAGTTG	0.378000													11	18					0	0	0.001368	0	0
DKFZp686A1627	266695	broad.mit.edu	37	13	19622217	19622217	+	RNA	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr13:19622217C>T	uc001umb.1	-	10		c.3594G>A				NR_002801				Homo sapiens mRNA; cDNA DKFZp686A1627 (from clone DKFZp686A1627).												0						TGCCTAGTTTCAACCTCTTTT	0.542000													61	50					0	0	0.003610	0	0
PARP4	143	broad.mit.edu	37	13	25021281	25021281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr13:25021281G>A	uc001upl.2	-	26	3264	c.3158C>T	c.(3157-3159)TCT>TTT	p.S1053F		NM_006437	NP_006428	Q9UKK3	PARP4_HUMAN	poly (ADP-ribose) polymerase family, member 4	1053					cell death|DNA repair|inflammatory response|protein ADP-ribosylation|response to drug|transport	cytoplasm|nucleus|ribonucleoprotein complex|spindle microtubule	DNA binding|enzyme binding|NAD+ ADP-ribosyltransferase activity			ovary(3)|skin(1)	4		all_epithelial(30;7.67e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.000127)|Epithelial(112;0.000778)|Kidney(163;0.039)|OV - Ovarian serous cystadenocarcinoma(117;0.0578)|KIRC - Kidney renal clear cell carcinoma(186;0.135)|Lung(94;0.195)		GACGGAGACAGAGTGGCAACT	0.473000													7	63					0	0	0.004007	0	0
BRCA2	675	broad.mit.edu	37	13	32907491	32907491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr13:32907491G>A	uc001uub.1	+	10	2103	c.1876G>A	c.(1876-1878)GAA>AAA	p.E626K	BRCA2_uc001uua.1_Missense_Mutation_p.E503K	NM_000059	NP_000050	P51587	BRCA2_HUMAN	breast cancer 2, early onset	626					cell cycle cytokinesis|centrosome duplication|double-strand break repair via homologous recombination|negative regulation of mammary gland epithelial cell proliferation|nucleotide-excision repair|positive regulation of transcription, DNA-dependent|regulation of S phase of mitotic cell cycle	BRCA2-MAGE-D1 complex|centrosome|nucleoplasm|stored secretory granule	gamma-tubulin binding|H3 histone acetyltransferase activity|H4 histone acetyltransferase activity|protease binding|single-stranded DNA binding			ovary(20)|endometrium(8)|lung(7)|breast(7)|oesophagus(5)|large_intestine(4)|central_nervous_system(3)|pancreas(3)|skin(2)|upper_aerodigestive_tract(1)|cervix(1)|salivary_gland(1)|liver(1)|kidney(1)	64		Lung SC(185;0.0262)		all cancers(112;7.13e-07)|Epithelial(112;1.59e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.000732)|BRCA - Breast invasive adenocarcinoma(63;0.0291)|GBM - Glioblastoma multiforme(144;0.0704)		AAATGCTTTTGAAGCACCACT	0.318000			D|Mis|N|F|S		breast|ovarian|pancreatic	breast|ovarian|pancreatic|leukemia  (FANCB|FANCD1)		Direct_reversal_of_damage|Homologous_recombination	Fanconi_Anemia_type_D1_bi-allelic_BRCA2_mutations|Fanconi_Anemia|Pancreatic_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_BRCA2_type|Hereditary_Prostate_Cancer|Li-Fraumeni_syndrome	TCGA Ovarian(8;0.087)			11	42					0	0	0.003163	0	0
CCNA1	8900	broad.mit.edu	37	13	37014171	37014171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr13:37014171G>A	uc001uvr.3	+	6	1299	c.949G>A	c.(949-951)GAT>AAT	p.D317N	CCNA1_uc010teo.1_Missense_Mutation_p.D273N|CCNA1_uc010abq.2_Missense_Mutation_p.D273N|CCNA1_uc010abp.2_Missense_Mutation_p.D273N|CCNA1_uc001uvs.3_Missense_Mutation_p.D316N|CCNA1_uc010abr.2_RNA	NM_003914	NP_003905	P78396	CCNA1_HUMAN	cyclin A1 isoform a	317					cell division|G2/M transition of mitotic cell cycle|male meiosis I|mitosis|regulation of cyclin-dependent protein kinase activity|regulation of transcription involved in G1/S phase of mitotic cell cycle|spermatogenesis	cytosol|microtubule cytoskeleton|nucleoplasm	protein kinase binding			lung(2)|skin(2)|ovary(1)	5		Breast(139;0.014)|Lung SC(185;0.0548)|Prostate(109;0.174)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.91e-07)|Epithelial(112;1.22e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00623)|BRCA - Breast invasive adenocarcinoma(63;0.0119)|GBM - Glioblastoma multiforme(144;0.0242)		TATCACCGATGATACATACAC	0.383000													25	45					0	0	0.004656	0	0
SIAH3	283514	broad.mit.edu	37	13	46358066	46358066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr13:46358066G>A	uc001vap.2	-	2	344	c.262C>T	c.(262-264)CAC>TAC	p.H88Y		NM_198849	NP_942146	Q8IW03	SIAH3_HUMAN	seven in absentia homolog 3	88	SIAH-type; degenerate.|His-rich.				multicellular organismal development|ubiquitin-dependent protein catabolic process	nucleus	metal ion binding			ovary(1)|skin(1)	2						tgaaggtggtgggggtgggcg	0.423000													6	23					0	0	0.001168	0	0
OR4K5	79317	broad.mit.edu	37	14	20389203	20389203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:20389203G>A	uc010tkw.1	+	1	438	c.438G>A	c.(436-438)ATG>ATA	p.M146I		NM_001005483	NP_001005483	Q8NGD3	OR4K5_HUMAN	olfactory receptor, family 4, subfamily K,	146	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00327)		TCTTGGTAATGATCTCCTGGG	0.438000													32	10					0	0	0.001786	0	0
TRIM9	114088	broad.mit.edu	37	14	51560982	51560982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:51560982C>T	uc001wyx.3	-	1	1441	c.676G>A	c.(676-678)GTC>ATC	p.V226I	TRIM9_uc001wyy.2_Missense_Mutation_p.V226I|TRIM9_uc001wyz.3_Missense_Mutation_p.V226I	NM_015163	NP_055978	Q9C026	TRIM9_HUMAN	tripartite motif protein 9 isoform 1	226	B box-type 2.				proteasomal ubiquitin-dependent protein catabolic process	cell junction|cytoskeleton|dendrite|synaptic vesicle	protein homodimerization activity|ubiquitin-protein ligase activity|zinc ion binding			skin(2)|lung(1)	3	all_epithelial(31;0.00418)|Breast(41;0.148)					CAGGTGGAGACCTTGCGTGGG	0.677000													21	9					0	0	0.001523	0	0
STYX	6815	broad.mit.edu	37	14	53223298	53223298	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:53223298C>T	uc010tqy.1	+	6	334	c.272C>T	c.(271-273)CCA>CTA	p.P91L	STYX_uc001xaa.2_Missense_Mutation_p.P91L	NM_001130701	NP_001124173	Q8WUJ0	STYX_HUMAN	serine/threonine/tyrosine interacting protein	91					protein dephosphorylation|spermatogenesis	cytoplasm	protein tyrosine/serine/threonine phosphatase activity				0	Breast(41;0.176)					GCAGATAATCCAGTTGAAAAT	0.249000													32	11					0	0	0.004878	0	0
NEK9	91754	broad.mit.edu	37	14	75574130	75574130	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:75574130G>A	uc001xrl.2	-	11	1397	c.1243C>T	c.(1243-1245)CGA>TGA	p.R415*	NEK9_uc001xrk.2_5'UTR	NM_033116	NP_149107	Q8TD19	NEK9_HUMAN	NIMA-related kinase 9	415	RCC1 1.				cell division|mitosis	mitochondrion|nucleus	ATP binding|metal ion binding|protein kinase binding|protein serine/threonine kinase activity			lung(2)|stomach(2)|ovary(1)	5				BRCA - Breast invasive adenocarcinoma(234;0.00718)		TTTGGCTGTCGATAGGAGGCT	0.443000													20	11					0	0	0.001216	0	0
SPTLC2	9517	broad.mit.edu	37	14	77987881	77987881	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:77987881G>A	uc001xub.2	-	10	1535	c.1347C>T	c.(1345-1347)TTC>TTT	p.F449F		NM_004863	NP_004854	O15270	SPTC2_HUMAN	serine palmitoyltransferase, long chain base	449				KECVQQLAENTRYFRRRLKEMGFIIYGNEDSPVV -> NGI TIHEVVQTRNTYHRFSPLSPVFSHQCLWIML (in Ref. 5).		integral to membrane|serine C-palmitoyltransferase complex	pyridoxal phosphate binding|serine C-palmitoyltransferase activity|transferase activity, transferring nitrogenous groups			upper_aerodigestive_tract(1)|ovary(1)	2			Kidney(204;0.164)	BRCA - Breast invasive adenocarcinoma(234;0.0346)	L-Serine(DB00133)|Pyridoxal Phosphate(DB00114)	GGCGTCTCCTGAAATACCTGG	0.408000													14	8					0	0	0.002450	0	0
CATSPERB	79820	broad.mit.edu	37	14	92174546	92174546	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:92174546G>A	uc001xzs.1	-	6	545	c.405C>T	c.(403-405)ATC>ATT	p.I135I		NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	135					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				GATGTAAAGTGATTCTTACTA	0.308000													15	11					0	0	0.000958	0	0
SERPINA10	51156	broad.mit.edu	37	14	94754675	94754675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:94754675C>T	uc001yct.2	-	3	1406	c.940G>A	c.(940-942)GAC>AAC	p.D314N	SERPINA10_uc001ycu.3_Missense_Mutation_p.D314N	NM_016186	NP_057270	Q9UK55	ZPI_HUMAN	serine (or cysteine) proteinase inhibitor, clade	314					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)|skin(1)	3		all_cancers(154;0.105)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)		GTCAGGTAGTCTTCAAGGGCG	0.488000													33	11					0	0	0.004289	0	0
ADAM6	8755	broad.mit.edu	37	14	106815726	106815727	+	RNA	DNP	GC	TT	TT			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:106815726_106815727GC>TT	uc010tyt.1	-	342		c.13432_13433GC>AA								Parts of antibodies, mostly variable regions.												0						TGTGTCTCTCGCACAGTAATAC	0.574000													5	28					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	107062360	107062360	+	RNA	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr14:107062360A>G	uc010tyt.1	-	131		c.6235T>C								Parts of antibodies, mostly variable regions.												0						GACAGCGCAGATGAGGGACAG	0.612000													5	42					0	0	0.001984	0	0
C15orf2	23742	broad.mit.edu	37	15	24921404	24921404	+	Silent	SNP	A	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr15:24921404A>C	uc001ywo.2	+	1	864	c.390A>C	c.(388-390)CCA>CCC	p.P130P		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	130					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TGCCTTCACCACGTGAGCCGG	0.632000													33	16					0	0	0.001287	0	0
EPB42	2038	broad.mit.edu	37	15	43494124	43494124	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr15:43494124G>A	uc001zra.3	-	12	2131	c.1831C>T	c.(1831-1833)CAG>TAG	p.Q611*	EPB42_uc001zqz.3_Nonsense_Mutation_p.Q278*|EPB42_uc010bde.2_Missense_Mutation_p.P402L|EPB42_uc001zrb.3_Nonsense_Mutation_p.Q641*|EPB42_uc010udm.1_Nonsense_Mutation_p.Q533*	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	611					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		AGGGAGTTCTGGAGGCTGACT	0.562000													58	14					0	0	0.003610	0	0
TGM7	116179	broad.mit.edu	37	15	43577045	43577045	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr15:43577045T>G	uc001zrf.1	-	7	976	c.971A>C	c.(970-972)GAG>GCG	p.E324A		NM_052955	NP_443187	Q96PF1	TGM7_HUMAN	transglutaminase 7	324					peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)	2		all_cancers(109;2.12e-14)|all_epithelial(112;1.99e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;9.14e-07)	L-Glutamine(DB00130)	TGACAGCATCTCGGCATTTCG	0.483000													90	29					0	0	0.003610	0	0
SLC28A2	9153	broad.mit.edu	37	15	45556157	45556157	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr15:45556157C>T	uc001zva.2	+	6	590	c.525C>T	c.(523-525)ATC>ATT	p.I175I		NM_004212	NP_004203	O43868	S28A2_HUMAN	solute carrier family 28 (sodium-coupled	175	Helical; (Potential).				nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding|nucleoside:sodium symporter activity|purine nucleoside transmembrane transporter activity			ovary(4)	4		all_cancers(109;8.53e-07)|all_epithelial(112;1.39e-05)|Lung NSC(122;8.3e-05)|all_lung(180;0.000547)|Melanoma(134;0.0417)		all cancers(107;3.77e-16)|GBM - Glioblastoma multiforme(94;2.71e-06)		AGCAGCTGATCCCCTTTGCAG	0.502000													25	8					0	0	0.003330	0	0
RHCG	51458	broad.mit.edu	37	15	90021159	90021159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr15:90021159G>A	uc002bnz.2	-	6	908	c.884C>T	c.(883-885)ACC>ATC	p.T295I	RHCG_uc002bny.2_Missense_Mutation_p.T66I|RHCG_uc002boa.2_RNA|RHCG_uc010bnq.1_Missense_Mutation_p.T179I	NM_016321	NP_057405	Q9UBD6	RHCG_HUMAN	Rh family, C glycoprotein	295	Helical; (Potential).				amine transport|cellular ion homeostasis|epithelial cell differentiation|transepithelial ammonium transport	apical plasma membrane|basolateral plasma membrane|cytoplasmic vesicle|integral to plasma membrane	ammonia transmembrane transporter activity|ammonium transmembrane transporter activity|ankyrin binding			kidney(1)	1	Lung NSC(78;0.0237)|all_lung(78;0.0478)					CTCAGCAGCGGTACCCACGGC	0.617000													20	7					0	0	0.001216	0	0
PRSS21	10942	broad.mit.edu	37	16	2871404	2871404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:2871404G>A	uc002crt.2	+	6	849	c.743G>A	c.(742-744)GGA>GAA	p.G248E	PRSS21_uc002crs.2_Missense_Mutation_p.G246E|PRSS21_uc002crr.2_Missense_Mutation_p.G234E	NM_006799	NP_006790	Q9Y6M0	TEST_HUMAN	testisin isoform 1	248	Peptidase S1.				proteolysis	anchored to membrane|cytoplasm|membrane fraction|plasma membrane	serine-type endopeptidase activity			ovary(1)|skin(1)	2						AACAAGAATGGACTGTGGTAT	0.617000													8	18					0	0	0.003080	0	0
MEFV	4210	broad.mit.edu	37	16	3297184	3297184	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:3297184C>T	uc002cun.1	-	5	1459	c.1419G>A	c.(1417-1419)CTG>CTA	p.L473L		NM_000243	NP_000234	O15553	MEFV_HUMAN	Mediterranean fever protein	473					inflammatory response	cytoplasm|microtubule|microtubule associated complex|nucleus	actin binding|zinc ion binding			central_nervous_system(2)|skin(2)|ovary(1)|lung(1)	6					Colchicine(DB01394)	CTTGCTGCTCCAGGAAGTAGT	0.577000													40	60					0	0	0.003610	0	0
NLRC3	197358	broad.mit.edu	37	16	3614281	3614281	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:3614281G>A	uc010btn.2	-	5	1068	c.657C>T	c.(655-657)GAC>GAT	p.D219D		NM_178844	NP_849172	Q7RTR2	NLRC3_HUMAN	NOD3 protein	219	NACHT.				I-kappaB kinase/NF-kappaB cascade|negative regulation of NF-kappaB transcription factor activity|T cell activation	cytoplasm	ATP binding			ovary(2)|pancreas(2)|central_nervous_system(1)|skin(1)	6						CATCCAAGCCGTCCAGGATCA	0.637000													5	10					0	0	0.000602	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858383	9858383	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:9858383C>T	uc002czo.3	-	13	3566	c.3018G>A	c.(3016-3018)GCG>GCA	p.A1006A	GRIN2A_uc010uym.1_Silent_p.A1006A|GRIN2A_uc010uyn.1_Silent_p.A849A|GRIN2A_uc002czr.3_Silent_p.A1006A	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1006	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GTCTAGAGTTCGCTTTGGATT	0.507000													21	23					0	0	0.001523	0	0
GRIN2A	2903	broad.mit.edu	37	16	9928072	9928072	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:9928072G>A	uc002czo.3	-	8	2215	c.1667C>T	c.(1666-1668)TCT>TTT	p.S556F	GRIN2A_uc010uym.1_Missense_Mutation_p.S556F|GRIN2A_uc010uyn.1_Missense_Mutation_p.S399F|GRIN2A_uc002czr.3_Missense_Mutation_p.S556F	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	556	Helical; (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CACCCAGACAGAGGCGCTGAA	0.438000													10	13					0	0	0.000443	0	0
TMC5	79838	broad.mit.edu	37	16	19452005	19452005	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:19452005C>T	uc002dgc.3	+	3	1394	c.645C>T	c.(643-645)AAC>AAT	p.N215N	TMC5_uc010vaq.1_Silent_p.N215N|TMC5_uc002dgb.3_Silent_p.N215N|TMC5_uc010var.1_Silent_p.N215N	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	215	Extracellular (Potential).					integral to membrane				skin(1)	1						TTCAACCTAACTCTCCACCCT	0.458000													20	26					0	0	0.001882	0	0
TMC5	79838	broad.mit.edu	37	16	19492699	19492699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:19492699G>A	uc002dgc.3	+	15	3024	c.2275G>A	c.(2275-2277)GGG>AGG	p.G759R	TMC5_uc010vaq.1_Missense_Mutation_p.G707R|TMC5_uc002dgb.3_Missense_Mutation_p.G759R|TMC5_uc010var.1_Missense_Mutation_p.G759R|TMC5_uc002dgd.1_Missense_Mutation_p.G513R|TMC5_uc002dge.3_Missense_Mutation_p.G513R|TMC5_uc002dgf.3_Missense_Mutation_p.G442R|TMC5_uc002dgg.3_Missense_Mutation_p.G400R	NM_001105248	NP_001098718	Q6UXY8	TMC5_HUMAN	transmembrane channel-like 5 isoform a	759	Cytoplasmic (Potential).					integral to membrane				skin(1)	1						CAGAATCATTGGGATGCAACT	0.438000													17	28					0	0	0.000958	0	0
ZP2	7783	broad.mit.edu	37	16	21213314	21213314	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:21213314C>T	uc002dii.2	-	12	1318	c.1318G>A	c.(1318-1320)GAA>AAA	p.E440K	ZP2_uc010bwn.1_Missense_Mutation_p.E479K	NM_003460	NP_003451	Q05996	ZP2_HUMAN	zona pellucida glycoprotein 2 preproprotein	440	Extracellular (Potential).|ZP.				binding of sperm to zona pellucida|intracellular protein transport	endoplasmic reticulum|Golgi apparatus|integral to membrane|multivesicular body|plasma membrane|proteinaceous extracellular matrix|stored secretory granule	acrosin binding|coreceptor activity			central_nervous_system(2)|ovary(1)	3				GBM - Glioblastoma multiforme(48;0.0573)		GCATGTATTTCGTTTTCATAG	0.393000													18	24					0	0	0.001523	0	0
KIAA0556	23247	broad.mit.edu	37	16	27692825	27692825	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:27692825T>C	uc002dow.2	+	8	938	c.914T>C	c.(913-915)TTC>TCC	p.F305S	KIAA0556_uc002dox.1_Missense_Mutation_p.F213S	NM_015202	NP_056017	O60303	K0556_HUMAN	hypothetical protein LOC23247	305										ovary(4)|large_intestine(2)|upper_aerodigestive_tract(1)|skin(1)	8						CCTGCTGTATTCCCAGACCAG	0.567000													50	82					0	0	0.003610	0	0
PHKB	5257	broad.mit.edu	37	16	47644739	47644739	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:47644739G>A	uc002eev.3	+	14	1418	c.1366G>A	c.(1366-1368)GAT>AAT	p.D456N	PHKB_uc002eeu.3_Missense_Mutation_p.D449N	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	456					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				TTTTTCAGCTGATGAACTTAT	0.279000													6	11					0	0	0.001984	0	0
C16orf78	123970	broad.mit.edu	37	16	49407878	49407878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:49407878G>A	uc002efr.2	+	1	71	c.28G>A	c.(28-30)GAT>AAT	p.D10N		NM_144602	NP_653203	Q8WTQ4	CP078_HUMAN	hypothetical protein LOC123970	10										central_nervous_system(1)	1						GGACCTGAAGGATTTAATGCC	0.532000													25	24					0	0	0.004656	0	0
SLC6A2	6530	broad.mit.edu	37	16	55727956	55727956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:55727956C>T	uc002eif.2	+	7	1064	c.953C>T	c.(952-954)TCC>TTC	p.S318F	SLC6A2_uc010ccd.2_Missense_Mutation_p.S318F|SLC6A2_uc002eig.2_Missense_Mutation_p.S318F|SLC6A2_uc002eih.2_Missense_Mutation_p.S318F|SLC6A2_uc002eii.2_Missense_Mutation_p.S213F|SLC6A2_uc002eij.2_Missense_Mutation_p.S32F	NM_001043	NP_001034	P23975	SC6A2_HUMAN	solute carrier family 6 member 2	318	Helical; Name=6; (Potential).				synaptic transmission	integral to plasma membrane|membrane fraction	norepinephrine:sodium symporter activity	p.S318fs*19(1)		lung(4)|ovary(2)|pancreas(2)	8				BRCA - Breast invasive adenocarcinoma(181;0.01)|Kidney(780;0.0267)	Amineptine(DB04836)|Amitriptyline(DB00321)|Amoxapine(DB00543)|Atomoxetine(DB00289)|Bethanidine(DB00217)|Bupropion(DB01156)|Clomipramine(DB01242)|Cocaine(DB00907)|Debrisoquin(DB04840)|Desipramine(DB01151)|Diethylpropion(DB00937)|Doxepin(DB01142)|Duloxetine(DB00476)|Ergotamine(DB00696)|Guanadrel Sulfate(DB00226)|Guanethidine(DB01170)|Imipramine(DB00458)|Maprotiline(DB00934)|Mazindol(DB00579)|Methylphenidate(DB00422)|Milnacipran(DB04896)|Nefazodone(DB01149)|Norepinephrine(DB00368)|Nortriptyline(DB00540)|Paroxetine(DB00715)|Phenmetrazine(DB00830)|Phentermine(DB00191)|Protriptyline(DB00344)|Reboxetine(DB00234)|Sibutramine(DB01105)|Tramadol(DB00193)|Trazodone(DB00656)|Trimipramine(DB00726)|Venlafaxine(DB00285)	ATATTTTTTTCCTTGGGGGCT	0.438000													20	52					0	0	0.003330	0	0
PMFBP1	83449	broad.mit.edu	37	16	72188326	72188326	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:72188326C>T	uc002fcc.3	-	4	370	c.198G>A	c.(196-198)GAG>GAA	p.E66E	PMFBP1_uc002fcd.2_Silent_p.E66E|PMFBP1_uc002fce.2_RNA|PMFBP1_uc002fcf.2_5'UTR	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	66										ovary(2)	2		Ovarian(137;0.179)				CCTCTGACTCCTCGAATGCTA	0.423000													18	29					0	0	0.006122	0	0
PKD1L2	114780	broad.mit.edu	37	16	81171071	81171071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:81171071G>A	uc002fgh.1	-	34	5690	c.5690C>T	c.(5689-5691)GCC>GTC	p.A1897V	PKD1L2_uc002fgf.1_5'Flank|PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1897	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TGGCAGCGGGGCCACAGTATC	0.602000													5	5					0	0	0.001168	0	0
MYO1C	4641	broad.mit.edu	37	17	1384095	1384095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:1384095G>A	uc002fsp.2	-	6	932	c.712C>T	c.(712-714)CAC>TAC	p.H238Y	MYO1C_uc002fsn.2_Missense_Mutation_p.H219Y|MYO1C_uc002fso.2_Missense_Mutation_p.H203Y|MYO1C_uc010vqj.1_Missense_Mutation_p.H203Y|MYO1C_uc010vqk.1_Missense_Mutation_p.H214Y	NM_001080779	NP_001074248	O00159	MYO1C_HUMAN	myosin IC isoform a	238	Myosin head-like.				mRNA transport|protein transport|transmembrane transport	basal plasma membrane|cytoplasm|filamentous actin|lateral plasma membrane|nuclear pore|nucleolus|nucleoplasm|stereocilium membrane	actin binding|ATP binding|calmodulin binding|motor activity				0				UCEC - Uterine corpus endometrioid carcinoma (25;0.0822)		TAGAAGATGTGGAAGTTCCGC	0.612000													40	47					0	0	0.001485	0	0
RAP1GAP2	23108	broad.mit.edu	37	17	2901634	2901634	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:2901634G>A	uc010ckd.2	+	14	1254	c.1164G>A	c.(1162-1164)CAG>CAA	p.Q388Q	RAP1GAP2_uc010cke.2_Silent_p.Q373Q	NM_015085	NP_055900	Q684P5	RPGP2_HUMAN	RAP1 GTPase activating protein 2 isoform 1	388	Rap-GAP.				regulation of small GTPase mediated signal transduction	centrosome|cytosol|perinuclear region of cytoplasm	GTPase activator activity			ovary(1)	1						TCGTCGTGCAGGTCGAGACCC	0.537000													48	49					0	0	0.003610	0	0
ITGAE	3682	broad.mit.edu	37	17	3680914	3680914	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:3680914C>T	uc002fwo.3	-	2	174	c.75G>A	c.(73-75)CGG>CGA	p.R25R		NM_002208	NP_002199	P38570	ITAE_HUMAN	integrin, alpha E precursor	25	FG-GAP 1.|Extracellular (Potential).				cell adhesion|integrin-mediated signaling pathway	integrin complex	receptor activity			large_intestine(2)|breast(1)|pancreas(1)	4				UCEC - Uterine corpus endometrioid carcinoma (3;0.0813)		TGAGCCAGGGCCGGGCCACAT	0.597000													23	56					0	0	0.004656	0	0
CHD3	1107	broad.mit.edu	37	17	7810332	7810332	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:7810332C>T	uc002gje.2	+	30	4799	c.4649C>T	c.(4648-4650)CCC>CTC	p.P1550L	CHD3_uc002gjd.2_Missense_Mutation_p.P1609L|CHD3_uc002gjf.2_Missense_Mutation_p.P1550L|CHD3_uc002gjh.2_Missense_Mutation_p.P126L|CHD3_uc002gjj.2_5'Flank	NM_001005273	NP_001005273	Q12873	CHD3_HUMAN	chromodomain helicase DNA binding protein 3	1550					chromatin modification|regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	microtubule organizing center|NuRD complex	ATP binding|ATP-dependent DNA helicase activity|DNA binding|protein binding|zinc ion binding			breast(1)	1		Prostate(122;0.202)				ACCAACAGTCCCTGCACCTCT	0.562000													51	174					0	0	0.003610	0	0
MYH13	8735	broad.mit.edu	37	17	10219099	10219099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:10219099C>T	uc002gmk.1	-	29	3985	c.3895G>A	c.(3895-3897)GAG>AAG	p.E1299K		NM_003802	NP_003793	Q9UKX3	MYH13_HUMAN	myosin, heavy polypeptide 13, skeletal muscle	1299	Potential.				muscle contraction	muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|skin(2)	6						ATCAGAGACTCCTTCTCTTCC	0.547000													21	27					0	0	0.001216	0	0
DNAH9	1770	broad.mit.edu	37	17	11778270	11778270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:11778270C>T	uc002gne.2	+	53	10315	c.10247C>T	c.(10246-10248)CCC>CTC	p.P3416L	DNAH9_uc010coo.2_Missense_Mutation_p.P2710L	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3416					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CACCAGACTCCCATTCCAGTC	0.557000													23	69					0	0	0.004656	0	0
DNAH9	1770	broad.mit.edu	37	17	11837243	11837243	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:11837243G>A	uc002gne.2	+	65	12412	c.12344G>A	c.(12343-12345)GGA>GAA	p.G4115E	DNAH9_uc010coo.2_Missense_Mutation_p.G3333E|DNAH9_uc002gnf.2_Missense_Mutation_p.G427E	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4115					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ATCATGTATGGAGGCCATATC	0.493000													24	41					0	0	0.004656	0	0
DNAH9	1770	broad.mit.edu	37	17	11872750	11872750	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:11872750G>C	uc002gne.2	+	69	13435	c.13367G>C	c.(13366-13368)CGG>CCG	p.R4456P	DNAH9_uc010coo.2_Missense_Mutation_p.R3674P|DNAH9_uc002gnf.2_Missense_Mutation_p.R768P	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	4456					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		ACTAGTCAGCGGGGACCCACC	0.517000													12	12					0	0	0.001368	0	0
ALDH3A1	218	broad.mit.edu	37	17	19648410	19648410	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:19648410G>A	uc010cqu.2	-	1	363	c.33C>T	c.(31-33)GCC>GCT	p.A11A	ALDH3A1_uc010vzd.1_Silent_p.A11A|ALDH3A1_uc002gwj.2_Silent_p.A11A|ALDH3A1_uc010cqv.2_Silent_p.A11A|ALDH3A1_uc002gwk.2_Intron|ALDH3A1_uc002gwl.1_5'Flank	NM_001135168	NP_001128640	P30838	AL3A1_HUMAN	aldehyde dehydrogenase 3A1	11					cellular aldehyde metabolic process	cytosol|endoplasmic reticulum	alcohol dehydrogenase (NADP+) activity|aldehyde dehydrogenase (NAD) activity|aldehyde dehydrogenase			ovary(1)|pancreas(1)	2	all_cancers(12;4.01e-05)|all_epithelial(12;0.00301)|Breast(13;0.186)			Colorectal(15;0.0829)	NADH(DB00157)	AGGCGGCGCGGGCGCGCTTCA	0.711000													14	12					0	0	0.004990	0	0
UNC45B	146862	broad.mit.edu	37	17	33504046	33504046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:33504046C>T	uc002hja.2	+	16	2139	c.2042C>T	c.(2041-2043)CCC>CTC	p.P681L	UNC45B_uc002hjb.2_Missense_Mutation_p.P679L|UNC45B_uc002hjc.2_Missense_Mutation_p.P679L|UNC45B_uc010cto.2_Missense_Mutation_p.P600L	NM_173167	NP_775259	Q8IWX7	UN45B_HUMAN	cardiomyopathy associated 4 isoform 1	681					cell differentiation|muscle organ development	cytosol	binding			ovary(3)|central_nervous_system(2)|breast(1)	6		Ovarian(249;0.17)				GCCCTGATTCCCCTGGCTTTG	0.567000													47	31					0	0	0.003610	0	0
KRT12	3859	broad.mit.edu	37	17	39023211	39023211	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:39023211G>A	uc002hvk.2	-	1	252	c.228C>T	c.(226-228)TCC>TCT	p.S76S		NM_000223	NP_000214	Q99456	K1C12_HUMAN	keratin 12	76	Head.|Gly-rich.				visual perception	intermediate filament	structural molecule activity			ovary(1)	1		Breast(137;0.000301)				CTCCTGCCATGGAACTTCCGG	0.612000													50	49					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	17	39296465	39296465	+	RNA	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:39296465G>A	uc010cxk.1	-	1		c.239C>T								Homo sapiens partial mRNA for keratin associated protein 4.6 (KRTAP4.6 gene).																		GCAGCACTGGGGTCTGCAGCA	0.542000													11	42					0	0	0.000978	0	0
TMEM106A	113277	broad.mit.edu	37	17	41365228	41365228	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:41365228C>T	uc002idn.1	+	3	405	c.168C>T	c.(166-168)TTC>TTT	p.F56F	TMEM106A_uc010why.1_Silent_p.F8F|TMEM106A_uc010cze.1_Silent_p.F56F|TMEM106A_uc010whz.1_Silent_p.F56F	NM_145041	NP_659478	Q96A25	T106A_HUMAN	transmembrane protein 106A	56						integral to membrane					0		Breast(137;0.0164)		BRCA - Breast invasive adenocarcinoma(366;0.0917)		ATGCCAGCTTCGTGACTTGTC	0.542000													105	89					0	0	0.003610	0	0
CRHR1	1394	broad.mit.edu	37	17	43884400	43884400	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:43884400C>T	uc010dap.2	+	2	323	c.58C>T	c.(58-60)CCC>TCC	p.P20S	CRHR1_uc010wjx.1_5'UTR|CRHR1_uc002ijp.2_5'UTR|CRHR1_uc002ijm.2_Missense_Mutation_p.P20S|CRHR1_uc002ijn.2_Missense_Mutation_p.P20S|CRHR1_uc010dar.2_Missense_Mutation_p.P20S|CRHR1_uc010dao.2_5'UTR|CRHR1_uc010daq.2_5'UTR|CRHR1_uc010das.1_RNA|CRHR1_uc002ijo.1_RNA	NM_001145146	NP_001138618	P34998	CRFR1_HUMAN	corticotropin releasing hormone receptor 1	20					female pregnancy|immune response|parturition	integral to plasma membrane	corticotrophin-releasing factor receptor activity|protein binding			lung(3)	3	Colorectal(2;0.0416)			BRCA - Breast invasive adenocarcinoma(366;0.161)		GGGGCTGAACCCCGTCTCTGC	0.607000													20	18					0	0	0.003954	0	0
HOXB8	3218	broad.mit.edu	37	17	46691956	46691956	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:46691956G>A	uc002inw.2	-	1	346	c.111C>T	c.(109-111)ACC>ACT	p.T37T		NM_024016	NP_076921	P17481	HXB8_HUMAN	homeobox B8	37						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						CGTACACCACGGTGGGTCGGC	0.622000													10	4					0	0	0.001368	0	0
COL1A1	1277	broad.mit.edu	37	17	48266125	48266125	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:48266125C>T	uc002iqm.2	-	42	3203	c.3077G>A	c.(3076-3078)CGA>CAA	p.R1026Q		NM_000088	NP_000079	P02452	CO1A1_HUMAN	alpha 1 type I collagen preproprotein	1026	Triple-helical region.				axon guidance|blood vessel development|collagen biosynthetic process|collagen fibril organization|embryonic skeletal system development|leukocyte migration|platelet activation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of cell migration|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription, DNA-dependent|protein localization to nucleus|sensory perception of sound|skin morphogenesis|tooth mineralization|visual perception	collagen type I|extracellular space|plasma membrane	identical protein binding|platelet-derived growth factor binding		COL1A1/PDGFB(372)	soft_tissue(372)|central_nervous_system(7)|skin(1)|breast(1)|pancreas(1)	382					Collagenase(DB00048)|Palifermin(DB00039)	AGAACCGTCTCGTCCAGGGGA	0.622000			T	PDGFB|USP6	dermatofibrosarcoma protuberans|aneurysmal bone cyst 		Osteogenesis imperfecta						27	32					0	0	0.001271	0	0
MYCBPAP	84073	broad.mit.edu	37	17	48602382	48602382	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:48602382C>T	uc010wmr.1	+	13	2071	c.1909C>T	c.(1909-1911)CCG>TCG	p.P637S	MYCBPAP_uc002iqz.2_RNA	NM_032133	NP_115509	Q8TBZ2	MYBPP_HUMAN	Myc-binding protein-associated protein	600					cell differentiation|multicellular organismal development|spermatogenesis|synaptic transmission	cytoplasm|membrane	protein binding			urinary_tract(2)|skin(2)|ovary(1)|pancreas(1)	6	Breast(11;1.23e-18)		BRCA - Breast invasive adenocarcinoma(22;1.23e-09)			CAGAAATCCTCCGGTGAGGCC	0.532000													37	35					0	0	0.001706	0	0
ABCC3	8714	broad.mit.edu	37	17	48741203	48741203	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:48741203G>A	uc002isl.2	+	9	1240	c.1160G>A	c.(1159-1161)GGT>GAT	p.G387D	ABCC3_uc002isk.3_Missense_Mutation_p.G387D|ABCC3_uc002ism.2_Missense_Mutation_p.G69D	NM_003786	NP_003777	O15438	MRP3_HUMAN	ATP-binding cassette, sub-family C, member 3	387	Cytoplasmic (By similarity).|ABC transmembrane type-1 1.				bile acid metabolic process	integral to plasma membrane|membrane fraction	ATP binding|bile acid-exporting ATPase activity|organic anion transmembrane transporter activity			skin(3)|central_nervous_system(1)	4			BRCA - Breast invasive adenocarcinoma(22;3.05e-09)		Glibenclamide(DB01016)	GGGATCATGGGTGTCATCTAC	0.547000													26	23					0	0	0.005443	0	0
MRC2	9902	broad.mit.edu	37	17	60767563	60767563	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:60767563G>A	uc002jad.2	+	26	4191	c.3789G>A	c.(3787-3789)CAG>CAA	p.Q1263Q	MRC2_uc002jae.2_Silent_p.Q334Q|MRC2_uc002jaf.2_Silent_p.Q129Q	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	1263	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCTGTCCCCAGGGACTGGCAG	0.637000													18	8					0	0	0.006122	0	0
MARCH10	162333	broad.mit.edu	37	17	60782926	60782926	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:60782926G>T	uc010ddr.2	-	10	2583	c.2345C>A	c.(2344-2346)CCA>CAA	p.P782Q	MARCH10_uc002jag.3_Missense_Mutation_p.P782Q|MARCH10_uc010dds.2_Missense_Mutation_p.P820Q|MARCH10_uc002jah.2_Missense_Mutation_p.P781Q|uc002jaj.1_5'Flank|uc002jak.2_5'Flank	NM_001100875	NP_001094345	Q8NA82	MARHA_HUMAN	ring finger protein 190	782							ligase activity|zinc ion binding				0						TCTGGGTTGTGGGTAATTTCT	0.403000													6	71					0.00198382	0.00953706	0.001984	1	0
ABCA8	10351	broad.mit.edu	37	17	66878810	66878810	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr17:66878810C>T	uc002jhp.2	-	28	3817	c.3638G>A	c.(3637-3639)GGA>GAA	p.G1213E	ABCA8_uc002jhq.2_Missense_Mutation_p.G1253E|ABCA8_uc010wqq.1_Missense_Mutation_p.G1248E	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1213						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TTCATCCTCTCCTTCTGGTTC	0.338000													21	53					0	0	0.001523	0	0
MYOM1	8736	broad.mit.edu	37	18	3188889	3188889	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:3188889C>T	uc002klp.2	-	4	962	c.628G>A	c.(628-630)GCA>ACA	p.A210T	MYOM1_uc002klq.2_Missense_Mutation_p.A210T	NM_003803	NP_003794	P52179	MYOM1_HUMAN	myomesin 1 isoform a	210	5.|6 X 6 AA tandem repeats.					striated muscle myosin thick filament	structural constituent of muscle			ovary(3)|central_nervous_system(1)|pancreas(1)	5						TGCCTGGATGCCGTGGACTGC	0.522000													33	9					0	0	0.003755	0	0
TTC39C	125488	broad.mit.edu	37	18	21712461	21712461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:21712461G>A	uc002kuw.2	+	14	2127	c.1675G>A	c.(1675-1677)GGC>AGC	p.G559S	TTC39C_uc002kuu.2_Missense_Mutation_p.G498S	NM_001135993	NP_001129465	Q8N584	TT39C_HUMAN	tetratricopeptide repeat domain 39C isoform 1	559							binding			ovary(1)	1						GGATTTCTCTGGCTACGACTT	0.463000													19	12					0	0	0.001882	0	0
ZNF521	25925	broad.mit.edu	37	18	22807111	22807111	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:22807111G>A	uc002kvk.2	-	4	1018	c.771C>T	c.(769-771)TTC>TTT	p.F257F	ZNF521_uc010xbe.1_RNA|ZNF521_uc010dly.2_Silent_p.F257F|ZNF521_uc002kvl.2_Silent_p.F37F	NM_015461	NP_056276	Q96K83	ZN521_HUMAN	zinc finger protein 521	257	C2H2-type 6.				cell differentiation|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein domain specific binding|zinc ion binding			ovary(4)|large_intestine(2)|lung(1)	7	all_cancers(21;0.0025)|all_epithelial(16;3.62e-05)|Ovarian(20;0.0991)					GGTCTTCCGGGAAGTCAAAGC	0.557000			T	PAX5	ALL								31	8					0	0	0.002836	0	0
DSG1	1828	broad.mit.edu	37	18	28926126	28926126	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:28926126C>T	uc002kwp.2	+	14	2277	c.2065C>T	c.(2065-2067)CTG>TTG	p.L689L	DSG1_uc010xbp.1_Silent_p.L48L	NM_001942	NP_001933	Q02413	DSG1_HUMAN	desmoglein 1 preproprotein	689	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|cell-cell junction assembly|cellular component disassembly involved in apoptosis|homophilic cell adhesion|protein stabilization	cytosol|desmosome|integral to membrane|internal side of plasma membrane	calcium ion binding|gamma-catenin binding|toxin binding			skin(3)|ovary(2)|central_nervous_system(2)	7			OV - Ovarian serous cystadenocarcinoma(10;0.00559)			AGAAGGAGGTCTGAATATGAA	0.428000													12	4					0	0	0.002450	0	0
MYO5B	4645	broad.mit.edu	37	18	47479700	47479700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:47479700G>A	uc002leb.2	-	14	1970	c.1682C>T	c.(1681-1683)TCT>TTT	p.S561F	MYO5B_uc002lec.1_Missense_Mutation_p.S560F	NM_001080467	NP_001073936	Q9ULV0	MYO5B_HUMAN	myosin VB	561	Myosin head-like.				protein transport	myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			ovary(2)|skin(2)|central_nervous_system(1)	5				READ - Rectum adenocarcinoma(32;0.103)		AAAACCATCAGAGAGGTACTC	0.488000													30	12					0	0	0.003271	0	0
DCC	1630	broad.mit.edu	37	18	50918177	50918177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:50918177C>T	uc002lfe.1	+	17	3195	c.2608C>T	c.(2608-2610)CCT>TCT	p.P870S	DCC_uc010xdr.1_Missense_Mutation_p.P698S|DCC_uc010dpf.1_Missense_Mutation_p.P505S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	870	Extracellular (Potential).|Fibronectin type-III 5.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		CAACTCTGTCCCTAAGAACCA	0.522000													36	16					0	0	0.003755	0	0
RNF152	220441	broad.mit.edu	37	18	59483343	59483343	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:59483343G>A	uc002lih.1	-	2	766	c.354C>T	c.(352-354)GGC>GGT	p.G118G		NM_173557	NP_775828	Q8N8N0	RN152_HUMAN	ring finger protein 152	118					apoptosis|protein K48-linked ubiquitination	integral to membrane|lysosomal membrane	ubiquitin-protein ligase activity|zinc ion binding			breast(1)	1		Colorectal(73;0.186)				GCAGGCGGCAGCCCATGTCTC	0.657000													27	10					0	0	0.001786	0	0
CTDP1	9150	broad.mit.edu	37	18	77475254	77475254	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr18:77475254C>T	uc002lnh.1	+	8	1941	c.1794C>T	c.(1792-1794)GTC>GTT	p.V598V	CTDP1_uc002lni.1_Silent_p.V598V|CTDP1_uc010drd.1_Silent_p.V598V	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	598					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		AGATCCTGGTCCGTGTACACA	0.517000													10	2					0	0	0.000673	0	0
ZNF556	80032	broad.mit.edu	37	19	2877583	2877583	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:2877583G>A	uc002lwp.1	+	4	714	c.627G>A	c.(625-627)GGG>GGA	p.G209G	ZNF556_uc002lwq.2_Silent_p.G208G	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	209	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AATCTTGCGGGAAGACATTTC	0.488000													17	60					0	0	0.006122	0	0
TICAM1	148022	broad.mit.edu	37	19	4816790	4816790	+	Nonsense_Mutation	SNP	G	A	A	rs142171170	byFrequency	TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:4816790G>A	uc002mbi.2	-	2	1851	c.1600C>T	c.(1600-1602)CAG>TAG	p.Q534*		NM_182919	NP_891549	Q8IUC6	TCAM1_HUMAN	toll-like receptor adaptor molecule 1	534	Sufficient to induce apoptosis.				apoptosis|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	protein kinase binding|signal transducer activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0139)		TTTCGGGCCTGAAGCCTGTGG	0.652000													17	12					0	0	0.004007	0	0
FUT5	2527	broad.mit.edu	37	19	5867302	5867302	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:5867302C>T	uc002mdo.3	-	2	523	c.435G>A	c.(433-435)TGG>TGA	p.W145*	FUT5_uc010duo.2_Nonsense_Mutation_p.W145*	NM_002034	NP_002025	Q11128	FUT5_HUMAN	fucosyltransferase 5	145	Lumenal (Potential).				L-fucose catabolic process|protein glycosylation	Golgi cisterna membrane|integral to membrane	3-galactosyl-N-acetylglucosaminide 4-alpha-L-fucosyltransferase activity|alpha(1,3)-fucosyltransferase activity				0						TGAACCAGATCCAGCGCTGCC	0.622000													23	17					0	0	0.003954	0	0
MUC16	94025	broad.mit.edu	37	19	9014552	9014552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:9014552C>T	uc002mkp.2	-	31	38627	c.38423G>A	c.(38422-38424)AGA>AAA	p.R12808K	MUC16_uc010xki.1_5'Flank	NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	12810	SEA 5.|Extracellular (Potential).			Missing (in Ref. 3; AAK74120).	cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						GAGACTGTTTCTGTCCAGGGT	0.552000													55	63					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9046211	9046211	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:9046211C>T	uc002mkp.2	-	5	35624	c.35420G>A	c.(35419-35421)GGT>GAT	p.G11807D		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11809	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGTCTCTGCACCAGGTCTAAT	0.473000													19	15					0	0	0.001882	0	0
MUC16	94025	broad.mit.edu	37	19	9068621	9068621	+	Silent	SNP	T	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:9068621T>A	uc002mkp.2	-	3	19029	c.18825A>T	c.(18823-18825)TCA>TCT	p.S6275S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	6277	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AATTTTGAGGTGAACGAGTCA	0.483000													28	28					0	0	0.001061	0	0
MUC16	94025	broad.mit.edu	37	19	9072091	9072091	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:9072091G>A	uc002mkp.2	-	3	15559	c.15355C>T	c.(15355-15357)CCT>TCT	p.P5119S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	5121	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTTATAGAAGGAAAAATTTCC	0.453000													14	35					0	0	0.001855	0	0
LPHN1	22859	broad.mit.edu	37	19	14271494	14271494	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:14271494G>A	uc010xnn.1	-	8	1836	c.1540C>T	c.(1540-1542)CAG>TAG	p.Q514*	LPHN1_uc010xno.1_Nonsense_Mutation_p.Q509*|uc002myf.2_Intron	NM_001008701	NP_001008701	O94910	LPHN1_HUMAN	latrophilin 1 isoform 1 precursor	514	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|sugar binding			ovary(2)|lung(2)|central_nervous_system(1)	5						GGTAGACACTGGAAGGAGGCA	0.383000													14	18					0	0	0.003163	0	0
MAST3	23031	broad.mit.edu	37	19	18249889	18249889	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:18249889C>T	uc002nhz.3	+	19	2073	c.2073C>T	c.(2071-2073)TCC>TCT	p.S691S		NM_015016	NP_055831	O60307	MAST3_HUMAN	microtubule associated serine/threonine kinase	691	AGC-kinase C-terminal.						ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			large_intestine(2)|ovary(2)|stomach(1)	5						AAGAATCGTCCACAGAGATCC	0.587000													3	8					0	0	0.000248	0	0
MEF2B	100271849	broad.mit.edu	37	19	19257566	19257566	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:19257566C>T	uc002nlm.2	-	6	774	c.660G>A	c.(658-660)GGG>GGA	p.G220G	MEF2B_uc002nln.2_Intron|MEF2B_uc002nll.2_Silent_p.G220G|LOC729991-MEF2B_uc010xqo.1_Silent_p.G220G|LOC729991-MEF2B_uc010xqp.1_Silent_p.G220G|LOC729991-MEF2B_uc002nlo.2_Silent_p.G220G|LOC729991-MEF2B_uc002nlp.2_Silent_p.G220G|MEF2B_uc002nlk.2_Silent_p.G223G	NM_001145785	NP_001139257			myocyte enhancer factor 2B isoform a											skin(1)	1			OV - Ovarian serous cystadenocarcinoma(5;0.00011)|Epithelial(12;0.00412)			TGTTTAGTCCCCCTCGGGGCC	0.662000													19	19					0	0	0.001216	0	0
ZNF90	7643	broad.mit.edu	37	19	20216075	20216075	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:20216075G>A	uc002nor.2	+	3	315	c.176G>A	c.(175-177)GGA>GAA	p.G59E	ZNF90_uc002nos.1_RNA|ZNF90_uc002not.1_RNA	NM_007138	NP_009069	Q03938	ZNF90_HUMAN	zinc finger protein 90	59	KRAB.					Golgi apparatus|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2						CTGGAGCAAGGAAAAAAACCC	0.398000													25	68					0	0	0.004656	0	0
ZNF208	7757	broad.mit.edu	37	19	22155678	22155678	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:22155678G>A	uc002nqp.2	-	5	2007	c.1858C>T	c.(1858-1860)CCC>TCC	p.P620S	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				CATTTGTAGGGTTTCTCTCCA	0.378000													9	6					0	0	0.000673	0	0
WDR62	284403	broad.mit.edu	37	19	36592210	36592210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:36592210C>T	uc002odc.2	+	24	3053	c.2962C>T	c.(2962-2964)CCG>TCG	p.P988S	WDR62_uc002odd.2_Missense_Mutation_p.P988S	NM_173636	NP_775907	O43379	WDR62_HUMAN	WD repeat domain 62 isoform 2	988					cerebral cortex development	nucleus					0	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.06)			GGACCAGAGCCCGCCTGAGGG	0.637000													10	9					0	0	0.001368	0	0
ZNF527	84503	broad.mit.edu	37	19	37879696	37879696	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:37879696C>T	uc010efk.1	+	5	856	c.745C>T	c.(745-747)CAT>TAT	p.H249Y	ZNF527_uc002ogf.3_Missense_Mutation_p.H217Y|ZNF527_uc010xtq.1_RNA	NM_032453	NP_115829	Q8NB42	ZN527_HUMAN	zinc finger protein 527	249					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			TTATGAAAGTCATGATTTTTC	0.368000													20	54					0	0	0.002299	0	0
SPINT2	10653	broad.mit.edu	37	19	38779819	38779819	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:38779819T>C	uc002ohr.1	+	4	710	c.379T>C	c.(379-381)TTC>CTC	p.F127L	SPINT2_uc002ohs.1_Missense_Mutation_p.F70L	NM_021102	NP_066925	O43291	SPIT2_HUMAN	serine protease inhibitor, Kunitz type, 2	127	Extracellular (Potential).				cellular component movement	cytoplasm|extracellular region|integral to membrane|soluble fraction	serine-type endopeptidase inhibitor activity				0	all_cancers(60;6.83e-07)		Lung(45;0.000246)|LUSC - Lung squamous cell carcinoma(53;0.000292)			CAGCGATATGTTCAACTATGA	0.318000													26	64					0	0	0.001061	0	0
ATP1A3	478	broad.mit.edu	37	19	42482129	42482129	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:42482129G>A	uc002osg.2	-	14	2056	c.1902C>T	c.(1900-1902)ATC>ATT	p.I634I	ATP1A3_uc010xwf.1_Silent_p.I645I|ATP1A3_uc010xwg.1_Silent_p.I604I|ATP1A3_uc010xwh.1_Silent_p.I647I|ATP1A3_uc002osh.2_Silent_p.I634I	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	634	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						GCCGGGCGGCGATGTCCTCCA	0.632000													23	60					0	0	0.003330	0	0
HIF3A	64344	broad.mit.edu	37	19	46811951	46811951	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:46811951G>A	uc002peh.2	+	5	509	c.480G>A	c.(478-480)ACG>ACA	p.T160T	HIF3A_uc002pef.1_Silent_p.T160T|HIF3A_uc002peg.3_Silent_p.T160T|HIF3A_uc010xxx.1_RNA|HIF3A_uc002pei.3_Silent_p.T104T|HIF3A_uc002pej.1_Silent_p.T91T|HIF3A_uc002pek.2_Silent_p.T104T|HIF3A_uc010xxy.1_Silent_p.T91T|HIF3A_uc002pel.2_Silent_p.T158T|HIF3A_uc010xxz.1_Silent_p.T109T	NM_152795	NP_690008	Q9Y2N7	HIF3A_HUMAN	hypoxia inducible factor 3, alpha subunit	160					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3		Ovarian(192;0.00965)|all_neural(266;0.0887)		OV - Ovarian serous cystadenocarcinoma(262;0.00204)|all cancers(93;0.0107)|GBM - Glioblastoma multiforme(486;0.0489)|Epithelial(262;0.136)		AGGCCCCCACGGAGCGGTGCT	0.711000													8	8					0	0	0.004482	0	0
RUVBL2	10856	broad.mit.edu	37	19	49510598	49510599	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:49510598_49510599CC>TT	uc002plr.1	+	6	448_449	c.435_436CC>TT	c.(433-438)ATCCAG>ATTTAG	p.Q146*	RUVBL2_uc002plq.1_Nonsense_Mutation_p.Q101*|RUVBL2_uc010yab.1_Nonsense_Mutation_p.Q146*|RUVBL2_uc002pls.1_RNA|RUVBL2_uc010emn.1_Nonsense_Mutation_p.Q101*|RUVBL2_uc010yac.1_Nonsense_Mutation_p.Q101*	NM_006666	NP_006657	Q9Y230	RUVB2_HUMAN	RuvB-like 2	146					cellular response to UV|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|protein folding|regulation of growth|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|Ino80 complex|membrane|MLL1 complex|NuA4 histone acetyltransferase complex|nuclear matrix	ATP binding|ATP-dependent DNA helicase activity|damaged DNA binding|identical protein binding|unfolded protein binding				0		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		all cancers(93;0.000449)|OV - Ovarian serous cystadenocarcinoma(262;0.000555)|GBM - Glioblastoma multiforme(486;0.00585)|Epithelial(262;0.047)		TGGTGGAGATCCAGATTGATCG	0.574000													30	22					0	0	0.004672	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51645996	51645996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:51645996C>T	uc002pvv.1	+	1	439	c.370C>T	c.(370-372)CGT>TGT	p.R124C	SIGLEC7_uc002pvw.1_Missense_Mutation_p.R124C|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Missense_Mutation_p.R124C	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	124	Extracellular (Potential).	Sialic acid.			cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		ATACTTCTTTCGTATGGAGAA	0.478000													27	59					0	0	0.005443	0	0
SIGLEC6	946	broad.mit.edu	37	19	52031506	52031506	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:52031506C>T	uc002pwy.2	-	6	1176	c.1014G>A	c.(1012-1014)TGG>TGA	p.W338*	SIGLEC6_uc002pwz.2_Nonsense_Mutation_p.W322*|SIGLEC6_uc002pxa.2_Intron|SIGLEC6_uc010ydb.1_Nonsense_Mutation_p.W275*|SIGLEC6_uc010ydc.1_Nonsense_Mutation_p.W338*|SIGLEC6_uc010eoz.1_Intron	NM_001245	NP_001236	O43699	SIGL6_HUMAN	sialic acid binding Ig-like lectin 6 isoform 1	338	Extracellular (Potential).				cell adhesion|cell-cell signaling	cytoplasm|extracellular region|integral to plasma membrane|membrane fraction|nucleus				ovary(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00115)|OV - Ovarian serous cystadenocarcinoma(262;0.0165)		CTTCTGGTTTCCCTATAATTT	0.498000													18	24					0	0	0.001216	0	0
ZNF534	147658	broad.mit.edu	37	19	52941172	52941172	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:52941172C>T	uc002pzk.2	+	4	559	c.498C>T	c.(496-498)TTC>TTT	p.F166F	ZNF534_uc002pzj.1_Intron|ZNF534_uc010epo.1_Intron|ZNF534_uc002pzl.2_Silent_p.F153F	NM_001143939	NP_001137411	Q76KX8	ZN534_HUMAN	zinc finger protein 534 isoform 2	166					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TAAGTTTTTTCAGTGTCAAAA	0.328000													28	23					0	0	0.001061	0	0
ZNF808	388558	broad.mit.edu	37	19	53058076	53058076	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:53058076C>T	uc010epq.1	+	5	2084	c.1907C>T	c.(1906-1908)TCA>TTA	p.S636L	ZNF808_uc002pzq.2_RNA|ZNF808_uc010epr.1_5'Flank	NM_001039886	NP_001034975	Q8N4W9	ZN808_HUMAN	zinc finger protein 808	636	C2H2-type 15.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(262;0.00501)|GBM - Glioblastoma multiforme(134;0.0213)		ACGTGGAATTCACAGCTGGCA	0.408000													16	64					0	0	0.003163	0	0
MIR520A	574467	broad.mit.edu	37	19	54194157	54194157	+	RNA	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:54194157G>A	hsa-mir-520a|MI0003149	+			c.23G>A																				0						CCCTCCAGAGGGAAGTACTTT	0.423000													28	90					0	0	0.002445	0	0
NLRP12	91662	broad.mit.edu	37	19	54314011	54314011	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:54314011G>A	uc002qch.3	-	3	1122	c.902C>T	c.(901-903)CCT>CTT	p.P301L	NLRP12_uc010eqw.2_5'Flank|NLRP12_uc002qci.3_Missense_Mutation_p.P301L|NLRP12_uc002qcj.3_Missense_Mutation_p.P301L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Missense_Mutation_p.P301L	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	301	NACHT.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		GTGGAAAGAAGGCTTGAGCTC	0.587000													22	24					0	0	0.003330	0	0
LILRB5	10990	broad.mit.edu	37	19	54759385	54759385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:54759385C>T	uc002qex.2	-	5	827	c.716G>A	c.(715-717)AGC>AAC	p.S239N	LILRA6_uc002qew.1_Intron|LILRB5_uc010yer.1_Missense_Mutation_p.S230N|LILRB5_uc002qey.2_Missense_Mutation_p.S239N|LILRB5_uc002qez.2_Missense_Mutation_p.S139N|LILRB5_uc002qfa.1_Missense_Mutation_p.S129N|LILRB5_uc010yes.1_RNA	NM_006840	NP_006831	O75023	LIRB5_HUMAN	leukocyte immunoglobulin-like receptor,	239	Ig-like C2-type 3.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response	integral to membrane	transmembrane receptor activity			ovary(1)|pancreas(1)	2	all_cancers(19;0.00681)|all_epithelial(19;0.00368)|all_lung(19;0.016)|Lung NSC(19;0.0296)|Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		CAGGGTCAGGCTGCCTCCGCG	0.617000													13	34					0	0	0.003163	0	0
KIR3DL1	3811	broad.mit.edu	37	19	55377343	55377343	+	Missense_Mutation	SNP	C	T	T	rs138402445		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:55377343C>T	uc002qhl.3	+	7	1147	c.1084C>T	c.(1084-1086)CGC>TGC	p.R362C	KIR3DL2_uc010esh.2_Missense_Mutation_p.R345C|KIR3DL2_uc002qho.3_Missense_Mutation_p.R362C			P43629	KI3L1_HUMAN	SubName: Full=KIR3DS1;	362	Cytoplasmic (Potential).				immune response|regulation of immune response	integral to plasma membrane	HLA-B specific inhibitory MHC class I receptor activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|kidney(1)|skin(1)	5				GBM - Glioblastoma multiforme(193;0.0192)		tctcctTTATCGCTGGTGCTC	0.448000													16	24					0	0	0.006122	0	0
NLRP11	204801	broad.mit.edu	37	19	56321567	56321567	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:56321567C>T	uc010ygf.1	-	5	1120	c.409G>A	c.(409-411)GAT>AAT	p.D137N	NLRP11_uc002qlz.2_Missense_Mutation_p.D38N|NLRP11_uc002qmb.2_Missense_Mutation_p.D38N|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	137							ATP binding			ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		CTGGTAGAATCATAGGCTAAT	0.363000													8	16					0	0	0.000443	0	0
PEG3	5178	broad.mit.edu	37	19	57327355	57327355	+	Missense_Mutation	SNP	G	A	A	rs143073381		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:57327355G>A	uc002qnu.2	-	7	2806	c.2455C>T	c.(2455-2457)CGT>TGT	p.R819C	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.R790C|PEG3_uc002qnv.2_Missense_Mutation_p.R819C|PEG3_uc002qnw.2_Missense_Mutation_p.R695C|PEG3_uc002qnx.2_Missense_Mutation_p.R693C|PEG3_uc010etr.2_Missense_Mutation_p.R819C	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	819					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		CCTCCAGCACGAACTCTCTGA	0.458000													10	46					0	0	0.000443	0	0
ZNF776	284309	broad.mit.edu	37	19	58264725	58264725	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:58264725C>A	uc002qpx.2	+	3	450	c.227C>A	c.(226-228)CCA>CAA	p.P76Q	ZNF587_uc002qqb.2_Intron|ZNF776_uc002qqa.2_Missense_Mutation_p.P76Q	NM_173632	NP_775903	Q68DI1	ZN776_HUMAN	zinc finger protein 776	76	KRAB.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(82;0.000256)|all_neural(62;0.0577)|Breast(46;0.147)|Ovarian(87;0.156)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0256)		CAGGAGTCCCCACTCAGGACA	0.468000													6	122					0.00198382	0.00953706	0.001984	1	0
OTOF	9381	broad.mit.edu	37	2	26712547	26712547	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:26712547G>A	uc002rhk.2	-	10	1086	c.959C>T	c.(958-960)TCG>TTG	p.S320L		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	320	Cytoplasmic (Potential).|C2 1.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CCCACTCACCGAAATCTTGAT	0.363000													28	7					0	0	0.002096	0	0
LRRTM4	80059	broad.mit.edu	37	2	77746445	77746445	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:77746445C>T	uc002snr.2	-	3	965	c.550G>A	c.(550-552)GAT>AAT	p.D184N	LRRTM4_uc002snq.2_Missense_Mutation_p.D184N|LRRTM4_uc002sns.2_Missense_Mutation_p.D184N|LRRTM4_uc002snt.2_Missense_Mutation_p.D185N	NM_001134745	NP_001128217	Q86VH4	LRRT4_HUMAN	leucine rich repeat transmembrane neuronal 4	184	Extracellular (Potential).|LRR 6.					integral to membrane				pancreas(3)|ovary(1)	4				Colorectal(11;0.059)		TCCAAAAAATCAAGATTCCGA	0.418000													6	4					0	0	0.003080	0	0
C2orf15	150590	broad.mit.edu	37	2	99767054	99767054	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:99767054G>C	uc002szk.2	+	4	534	c.135G>C	c.(133-135)CAG>CAC	p.Q45H	TSGA10_uc002szi.3_Intron|MRPL30_uc002szl.1_Intron	NM_144706	NP_653307	Q8WU43	CB015_HUMAN	hypothetical protein LOC150590	45											0						CTGCTACTCAGGTATCTGCTA	0.368000													3	54					0	0	0.004672	0	0
MFSD9	84804	broad.mit.edu	37	2	103340158	103340158	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:103340158C>T	uc002tcb.2	-	5	705	c.637_splice	c.e5+1	p.G213_splice	MFSD9_uc010fja.2_Splice_Site	NM_032718	NP_116107	Q8NBP5	MFSD9_HUMAN	major facilitator superfamily domain containing						transmembrane transport	integral to membrane|plasma membrane	transporter activity			ovary(2)|breast(2)	4						TGTCAACTTACCAGCATTGAG	0.294000													27	7					0	0	0.005443	0	0
FAM123C	205147	broad.mit.edu	37	2	131519662	131519662	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:131519662G>A	uc002trw.2	+	2	207	c.17G>A	c.(16-18)GGA>GAA	p.G6E	FAM123C_uc010fmv.2_Missense_Mutation_p.G6E|FAM123C_uc010fms.1_Missense_Mutation_p.G6E|FAM123C_uc010fmt.1_Missense_Mutation_p.G6E|FAM123C_uc010fmu.1_Missense_Mutation_p.G6E	NM_152698	NP_689911	Q8N944	F123C_HUMAN	hypothetical protein LOC205147	6										pancreas(2)|ovary(1)	3	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.13)		CTGAAGAGAGGAAAGACCTTC	0.622000													12	1					0	0	0.002450	0	0
ZEB2	9839	broad.mit.edu	37	2	145157015	145157015	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:145157015G>A	uc002tvu.2	-	8	2219	c.1739C>T	c.(1738-1740)CCA>CTA	p.P580L	ZEB2_uc002tvv.2_Missense_Mutation_p.P574L|ZEB2_uc010zbm.1_Missense_Mutation_p.P551L|ZEB2_uc010fnp.2_Intron|ZEB2_uc010fnq.1_Missense_Mutation_p.P609L	NM_014795	NP_055610	O60315	ZEB2_HUMAN	zinc finger homeobox 1b	580						cytoplasm|nucleolus	phosphatase regulator activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|SMAD binding|zinc ion binding			ovary(5)|pancreas(2)|upper_aerodigestive_tract(1)|large_intestine(1)	9				BRCA - Breast invasive adenocarcinoma(221;0.112)		GCATGAAAATGGAGTGGATAT	0.393000													46	17					0	0	0.003610	0	0
SLC4A10	57282	broad.mit.edu	37	2	162813650	162813650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:162813650G>A	uc002ubx.3	+	20	2877	c.2693G>A	c.(2692-2694)GGA>GAA	p.G898E	SLC4A10_uc002uby.3_Missense_Mutation_p.G868E|SLC4A10_uc010zcs.1_Missense_Mutation_p.G879E	NM_022058	NP_071341	Q6U841	S4A10_HUMAN	solute carrier family 4, sodium bicarbonate	898	Extracellular (Potential).				bicarbonate transport|chloride transport|sodium ion transport	integral to membrane|plasma membrane	inorganic anion exchanger activity|symporter activity			ovary(2)|lung(2)|pancreas(1)	5						TCAGCTCCAGGAGAACAACCC	0.458000													4	0					0	0	0.001168	0	0
GAD1	2571	broad.mit.edu	37	2	171705804	171705804	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:171705804G>A	uc002ugi.2	+	12	1550	c.1128G>A	c.(1126-1128)TGG>TGA	p.W376*	GAD1_uc010fqc.2_5'UTR	NM_000817	NP_000808	Q99259	DCE1_HUMAN	glutamate decarboxylase 1 isoform GAD67	376					glutamate decarboxylation to succinate|neurotransmitter biosynthetic process|neurotransmitter secretion|protein-pyridoxal-5-phosphate linkage	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|plasma membrane	glutamate decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(1)	1					L-Glutamic Acid(DB00142)|Pyridoxal Phosphate(DB00114)	AGGCTGCCTGGGGAGGTGGGC	0.522000													19	5					0	0	0.001882	0	0
TTN	7273	broad.mit.edu	37	2	179430378	179430378	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:179430378C>T	uc010zfg.1	-	275	73001	c.72777G>A	c.(72775-72777)TGG>TGA	p.W24259*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W17954*|TTN_uc010zfi.1_Nonsense_Mutation_p.W17887*|TTN_uc010zfj.1_Nonsense_Mutation_p.W17762*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	25186							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CCACAATGCTCCATTTTTCAG	0.443000													32	7					0	0	0.002445	0	0
TTN	7273	broad.mit.edu	37	2	179526499	179526499	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:179526499G>A	uc010zfk.1	-	23	2096	c.1548C>T	c.(1546-1548)GTC>GTT	p.V516V	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc010fre.1_Intron			Q8WZ42	TITIN_HUMAN	SubName: Full=Titin; Flags: Fragment;	11761							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TAACAGGTGGGACTTCAGGCT	0.348000													8	6					0	0	0.000978	0	0
DNAH7	56171	broad.mit.edu	37	2	196749357	196749357	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:196749357G>A	uc002utj.3	-	35	5816	c.5715C>T	c.(5713-5715)GTC>GTT	p.V1905V		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1905					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						CAGGAAATGGGACAGTTAGTG	0.408000													38	14					0	0	0.002522	0	0
CPS1	1373	broad.mit.edu	37	2	211542674	211542674	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:211542674C>T	uc002vee.3	+	38	4600	c.4468C>T	c.(4468-4470)CAC>TAC	p.H1490Y	CPS1_uc010fur.2_Missense_Mutation_p.H1496Y|CPS1_uc010fus.2_Missense_Mutation_p.H1039Y	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1490					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GAGTCTTTTCCACTACAGGCA	0.448000													60	20					0	0	0.003610	0	0
ERBB4	2066	broad.mit.edu	37	2	212248745	212248745	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr2:212248745C>T	uc002veg.1	-	28	3620	c.3522G>A	c.(3520-3522)CGG>CGA	p.R1174R	ERBB4_uc002veh.1_Silent_p.R1158R|ERBB4_uc010zji.1_Silent_p.R1164R|ERBB4_uc010zjj.1_Silent_p.R1148R	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	1174	Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		CATTTTTTCTCCGAGAAACAA	0.403000										TSP Lung(8;0.080)			20	4					0	0	0.002780	0	0
ZCCHC3	85364	broad.mit.edu	37	20	279320	279320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:279320C>T	uc002wdf.2	+	2	1114	c.1090C>T	c.(1090-1092)CCT>TCT	p.P364S	ZCCHC3_uc002wdg.2_RNA	NM_033089	NP_149080	Q9NUD5	ZCHC3_HUMAN	zinc finger, CCHC domain containing 3	365	CCHC-type 2.						nucleic acid binding|zinc ion binding				0		all_cancers(10;0.000209)|Lung NSC(37;0.0417)|all_lung(30;0.0713)|all_epithelial(17;0.0748)|Breast(17;0.231)	OV - Ovarian serous cystadenocarcinoma(29;0.149)			GCACCTGAGCCCTTACTGCCG	0.612000													19	42					0	0	0.001882	0	0
TGM3	7053	broad.mit.edu	37	20	2293587	2293587	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:2293587G>A	uc002wfx.3	+	5	681	c.584G>A	c.(583-585)AGG>AAG	p.R195K		NM_003245	NP_003236	Q08188	TGM3_HUMAN	transglutaminase 3 precursor	195					cell envelope organization|hair follicle morphogenesis|keratinization|peptide cross-linking|protein tetramerization	cytoplasm|extrinsic to internal side of plasma membrane	acyltransferase activity|calcium ion binding|GDP binding|GTP binding|GTPase activity|magnesium ion binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(4)|ovary(3)|breast(1)|skin(1)	9					L-Glutamine(DB00130)	ATCTTGGATAGGAGTCTGAAT	0.468000													28	86					0	0	0.001271	0	0
RNF24	11237	broad.mit.edu	37	20	3944649	3944649	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:3944649G>A	uc002wkh.2	-	2	286	c.16C>T	c.(16-18)CCA>TCA	p.P6S	RNF24_uc002wki.2_Missense_Mutation_p.P27S|RNF24_uc002wkj.2_Missense_Mutation_p.P6S	NM_007219	NP_009150	Q9Y225	RNF24_HUMAN	ring finger protein 24 isoform 1	6						Golgi membrane|integral to membrane	zinc ion binding				0						TTGTAATGTGGGAAATCCGAG	0.378000													13	31					0	0	0.001855	0	0
PROKR2	128674	broad.mit.edu	37	20	5282770	5282770	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:5282770C>T	uc010zqw.1	-	2	1071	c.1071G>A	c.(1069-1071)CGG>CGA	p.R357R	PROKR2_uc010zqx.1_Silent_p.R357R|PROKR2_uc010zqy.1_Silent_p.R357R	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	357	Cytoplasmic (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						ACTTGCTCCCCCGCTGGGAGG	0.557000										HNSCC(71;0.22)			36	34					0	0	0.002836	0	0
PROKR2	128674	broad.mit.edu	37	20	5283124	5283124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:5283124C>T	uc010zqw.1	-	2	717	c.717G>A	c.(715-717)ATG>ATA	p.M239I	PROKR2_uc010zqx.1_Missense_Mutation_p.M239I|PROKR2_uc010zqy.1_Missense_Mutation_p.M239I	NM_144773	NP_658986	Q8NFJ6	PKR2_HUMAN	prokineticin receptor 2	239	Helical; Name=5; (Potential).					integral to membrane|plasma membrane	neuropeptide Y receptor activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5						AGCACAGGGTCATGGTGACCA	0.582000										HNSCC(71;0.22)			40	36					0	0	0.001485	0	0
HCK	3055	broad.mit.edu	37	20	30662496	30662496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:30662496G>A	uc002wxh.2	+	5	571	c.400G>A	c.(400-402)GCC>ACC	p.A134T	HCK_uc010gdy.2_Missense_Mutation_p.A113T|HCK_uc002wxi.2_Missense_Mutation_p.A112T	NM_002110	NP_002101	P08631	HCK_HUMAN	hemopoietic cell kinase isoform p61HCK	134	SH3.				interspecies interaction between organisms|mesoderm development|regulation of defense response to virus by virus|viral reproduction	caveola|cytosol	ATP binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|ovary(2)|central_nervous_system(2)|pancreas(1)	9			UCEC - Uterine corpus endometrioid carcinoma (5;0.0241)			CAACTATGTCGCCCGCGTTGA	0.468000													33	104					0	0	0.004289	0	0
MYH7B	57644	broad.mit.edu	37	20	33584489	33584489	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:33584489A>T	uc002xbi.1	+	28	3412	c.3320A>T	c.(3319-3321)GAC>GTC	p.D1107V		NM_020884	NP_065935	A7E2Y1	MYH7B_HUMAN	myosin, heavy polypeptide 7B, cardiac muscle,	1065	Potential.					membrane|myosin filament	actin binding|ATP binding|motor activity			ovary(1)|breast(1)	2			BRCA - Breast invasive adenocarcinoma(18;0.00691)			CTGGAGGGTGACCTGAAGCTG	0.627000													7	26					0	0	0.003080	0	0
MYL9	10398	broad.mit.edu	37	20	35173374	35173374	+	Silent	SNP	C	T	T	rs150788040	by1000genomes	TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:35173374C>T	uc002xfl.1	+	2	181	c.87C>T	c.(85-87)TCC>TCT	p.S29S	uc002xfk.3_Intron|MYL9_uc002xfm.1_Silent_p.S29S	NM_006097	NP_006088	P24844	MYL9_HUMAN	myosin regulatory light chain 9 isoform a	29	EF-hand 1.				axon guidance|muscle contraction|regulation of muscle contraction	cytosol|muscle myosin complex	calcium ion binding|structural constituent of muscle				0	Breast(12;0.0192)	Myeloproliferative disorder(115;0.00878)				TTGACCAGTCCCAGATCCAGG	0.552000													20	47					0	0	0.001216	0	0
SLC32A1	140679	broad.mit.edu	37	20	37353665	37353665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:37353665G>A	uc002xjc.2	+	1	561	c.298G>A	c.(298-300)GAC>AAC	p.D100N		NM_080552	NP_542119	Q9H598	VIAAT_HUMAN	solute carrier family 32, member 1	100	Cytoplasmic (Potential).				neurotransmitter secretion	clathrin sculpted gamma-aminobutyric acid transport vesicle membrane|integral to membrane|plasma membrane|synaptic vesicle membrane	vesicular hydrogen:amino acid antiporter activity				0		Myeloproliferative disorder(115;0.00878)			Glycine(DB00145)	CGGCTCCAAGGACCAGGTGGG	0.672000													17	50					0	0	0.001216	0	0
ZNF335	63925	broad.mit.edu	37	20	44589153	44589153	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:44589153G>A	uc002xqw.2	-	13	1917	c.1794C>T	c.(1792-1794)TCC>TCT	p.S598S	ZNF335_uc010zxk.1_Silent_p.S443S	NM_022095	NP_071378	Q9H4Z2	ZN335_HUMAN	zinc finger protein 335	598	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)|ovary(1)	4		Myeloproliferative disorder(115;0.0122)				GCTTCTTAAAGGACTTTCCAC	0.617000													16	41					0	0	0.003163	0	0
CSE1L	1434	broad.mit.edu	37	20	47695115	47695115	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr20:47695115C>T	uc002xty.2	+	14	1572	c.1438C>T	c.(1438-1440)CTT>TTT	p.L480F	CSE1L_uc010zyg.1_Missense_Mutation_p.L263F|CSE1L_uc010ghx.2_Missense_Mutation_p.L424F|CSE1L_uc010ghy.2_Missense_Mutation_p.L129F|CSE1L_uc010zyh.1_Missense_Mutation_p.L129F	NM_001316	NP_001307	P55060	XPO2_HUMAN	CSE1 chromosome segregation 1-like protein	480					apoptosis|cell proliferation|intracellular protein transport	cytoplasm|nucleus	importin-alpha export receptor activity			large_intestine(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000491)|Colorectal(8;0.198)			ATTTCCTGTCCTTAAAGCTGA	0.289000													45	70					0	0	0.003610	0	0
SAMSN1	64092	broad.mit.edu	37	21	15870784	15870784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:15870784C>T	uc002yju.1	-	7	980	c.898G>A	c.(898-900)GAA>AAA	p.E300K	SAMSN1_uc010gky.1_Missense_Mutation_p.E132K|SAMSN1_uc002yjv.1_Missense_Mutation_p.E368K	NM_022136	NP_071419	Q9NSI8	SAMN1_HUMAN	SAM domain, SH3 domain and nuclear localization	300	SAM.				negative regulation of adaptive immune response|negative regulation of B cell activation|negative regulation of peptidyl-tyrosine phosphorylation	cytoplasm|nucleus|ruffle	phosphotyrosine binding			ovary(3)|pancreas(1)	4				Epithelial(23;0.000155)|COAD - Colon adenocarcinoma(22;0.00118)|Colorectal(24;0.00961)|Lung(58;0.164)		AGGAAGTTTTCAGCAGCTGAT	0.338000													16	48					0	0	0.000958	0	0
JAM2	58494	broad.mit.edu	37	21	27071055	27071055	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:27071055G>A	uc002ylp.1	+	5	1006	c.461G>A	c.(460-462)CGA>CAA	p.R154Q	JAM2_uc011ace.1_Missense_Mutation_p.R154Q|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Missense_Mutation_p.R118Q|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Missense_Mutation_p.R154Q|JAM2_uc010gli.1_Missense_Mutation_p.R154Q	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	154	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						GTAGAGCTACGATGTCAAGAC	0.448000													13	16					0	0	0.003163	0	0
JAM2	58494	broad.mit.edu	37	21	27074551	27074551	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:27074551C>T	uc002ylp.1	+	6	1212	c.667C>T	c.(667-669)CGC>TGC	p.R223C	JAM2_uc011ace.1_Missense_Mutation_p.R223C|JAM2_uc002ylq.1_RNA|JAM2_uc011acf.1_Missense_Mutation_p.R187C|JAM2_uc010glh.1_RNA|JAM2_uc002ylr.1_Missense_Mutation_p.R223C|JAM2_uc010gli.1_Missense_Mutation_p.R223C	NM_021219	NP_067042	P57087	JAM2_HUMAN	junctional adhesion molecule 2 precursor	223	Extracellular (Potential).|Ig-like C2-type.				blood coagulation|cell-cell adhesion|leukocyte migration	integral to plasma membrane|tight junction					0						TGTTGGATATCGCAGGTGTCC	0.398000													6	23					0	0	0.003080	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671500	39671500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:39671500C>T	uc002ywv.2	+	4	619	c.317C>T	c.(316-318)CCC>CTC	p.P106L	KCNJ15_uc002yww.2_Missense_Mutation_p.P106L|KCNJ15_uc002ywx.2_Missense_Mutation_p.P106L	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	106	Extracellular (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						AATCATACCCCCTGCATCATG	0.478000													23	54					0	0	0.003330	0	0
DSCAM	1826	broad.mit.edu	37	21	41414575	41414575	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:41414575G>A	uc002yyq.1	-	32	5861	c.5409C>T	c.(5407-5409)TCC>TCT	p.S1803S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1803	Cytoplasmic (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CACTTTCTGTGGAGACCATGC	0.537000													13	19					0	0	0.002450	0	0
DSCAM	1826	broad.mit.edu	37	21	42080452	42080452	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:42080452C>T	uc002yyq.1	-	2	741	c.289G>A	c.(289-291)GAT>AAT	p.D97N	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	97	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				TAAGTATTATCATGGATTAAG	0.473000													30	41					0	0	0.001512	0	0
DSCAM	1826	broad.mit.edu	37	21	42080678	42080678	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:42080678G>A	uc002yyq.1	-	2	515	c.63C>T	c.(61-63)CAC>CAT	p.H21H	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	21	Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				AGAGGCTGGAGTGTAGGTCTT	0.512000													26	50					0	0	0.003954	0	0
TRPM2	7226	broad.mit.edu	37	21	45802643	45802643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:45802643C>T	uc002zet.1	+	10	1471	c.1258C>T	c.(1258-1260)CGG>TGG	p.R420W	TRPM2_uc002zeu.1_Missense_Mutation_p.R420W|TRPM2_uc002zew.1_Missense_Mutation_p.R420W|TRPM2_uc010gpt.1_Missense_Mutation_p.R420W|TRPM2_uc002zex.1_Missense_Mutation_p.R206W	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	420	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GACTGTCTTCCGGGAAGGCAA	0.577000													10	20					0	0	0.000673	0	0
PCNT	5116	broad.mit.edu	37	21	47810612	47810612	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr21:47810612C>T	uc002zji.3	+	20	3975	c.3868C>T	c.(3868-3870)CGT>TGT	p.R1290C	PCNT_uc002zjj.2_Missense_Mutation_p.R1172C	NM_006031	NP_006022	O95613	PCNT_HUMAN	pericentrin	1290					cilium assembly|G2/M transition of mitotic cell cycle	cytosol|microtubule	calmodulin binding			ovary(4)|breast(2)|pancreas(2)	8	Breast(49;0.112)					AATTCATTCTCGTTTTGAAAA	0.413000													16	42					0	0	0.004007	0	0
DGCR8	54487	broad.mit.edu	37	22	20097562	20097562	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:20097562G>A	uc002zri.2	+	14	2603	c.2253G>A	c.(2251-2253)AAG>AAA	p.K751K	DGCR8_uc010grz.2_Silent_p.K718K|DGCR8_uc002zrj.2_Silent_p.K394K	NM_022720	NP_073557	Q8WYQ5	DGCR8_HUMAN	DiGeorge syndrome critical region gene 8	751	Necessary for heme-binding and pri-miRNA processing.|Necessary for interaction with DROSHA.				primary miRNA processing	cytoplasm|cytoplasm|microtubule cytoskeleton|nucleolus|nucleoplasm	double-stranded RNA binding|metal ion binding|protein binding				0	Colorectal(54;0.0993)					AGACTCGAAAGAAGCCCAAGA	0.647000													14	49					0	0	0.003163	0	0
AP1B1	162	broad.mit.edu	37	22	29750755	29750755	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:29750755C>T	uc003afj.2	-	7	1006	c.822G>A	c.(820-822)TTG>TTA	p.L274L	AP1B1_uc003afi.2_Silent_p.L274L|AP1B1_uc003afk.2_Silent_p.L274L|AP1B1_uc003afl.2_Silent_p.L274L	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	274					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						CGTAGTAGTCCAAGTCCTTAG	0.582000													17	43					0	0	0.000958	0	0
TBC1D10A	83874	broad.mit.edu	37	22	30688467	30688467	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:30688467G>A	uc011akt.1	-	11	1448	c.1424C>T	c.(1423-1425)GCC>GTC	p.A475V	GATSL3_uc003ahc.2_5'Flank|GATSL3_uc003ahe.2_5'Flank|GATSL3_uc003ahd.2_5'Flank|GATSL3_uc003ahf.2_Intron|GATSL3_uc003ahg.2_Intron|GATSL3_uc003ahh.2_Intron|GATSL3_uc010gvq.2_Intron|GATSL3_uc003ahi.2_Intron|GATSL3_uc010gvr.2_5'Flank|GATSL3_uc010gvs.2_5'Flank|TBC1D10A_uc003ahj.3_Missense_Mutation_p.A387V|TBC1D10A_uc010gvu.2_Missense_Mutation_p.A482V|TBC1D10A_uc003ahk.3_Missense_Mutation_p.A475V	NM_031937	NP_114143	Q9BXI6	TB10A_HUMAN	TBC1 domain family, member 10A	475						intracellular|microvillus	guanyl-nucleotide exchange factor activity|PDZ domain binding|Rab GTPase activator activity			ovary(1)	1						GTCCTTGGGGGCTGAGTCCTT	0.632000													76	57					0	0	0.003610	0	0
PATZ1	23598	broad.mit.edu	37	22	31740335	31740335	+	Silent	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:31740335A>G	uc003akq.2	-	1	1915	c.1254T>C	c.(1252-1254)TGT>TGC	p.C418C	PATZ1_uc003akp.2_Silent_p.C418C|PATZ1_uc003akr.2_Silent_p.C418C|PATZ1_uc003aks.2_Silent_p.C418C|uc003akt.2_5'Flank	NM_014323	NP_055138	Q9HBE1	PATZ1_HUMAN	POZ (BTB) and AT hook containing zinc finger 1	418	C2H2-type 4.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding		EWSR1/PATZ1(2)	soft_tissue(2)	2						AGCCTTTCCCACAGCTCTGGC	0.577000													12	44					0	0	0.002450	0	0
ELFN2	114794	broad.mit.edu	37	22	37771217	37771217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:37771217C>T	uc003asq.3	-	3	1144	c.358G>A	c.(358-360)GAG>AAG	p.E120K		NM_052906	NP_443138	Q5R3F8	LRFN6_HUMAN	leucine rich repeat containing 62	120	LRR 3.|Extracellular (Potential).					cell surface|integral to membrane				upper_aerodigestive_tract(1)|ovary(1)	2	Melanoma(58;0.0574)					AGCATGCCCTCCGTCAGGTTG	0.622000													20	62					0	0	0.001216	0	0
TOB2	10766	broad.mit.edu	37	22	41833051	41833051	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:41833051G>A	uc003azz.1	-	2	1006	c.299C>T	c.(298-300)TCC>TTC	p.S100F		NM_016272	NP_057356	Q14106	TOB2_HUMAN	transducer of ERBB2, 2	100					female gamete generation|negative regulation of cell proliferation	cytoplasm|nucleus				ovary(1)	1						AATCTGGTAGGACACCTCAAA	0.587000													34	31					0	0	0.004289	0	0
SMC1B	27127	broad.mit.edu	37	22	45802514	45802514	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:45802514G>A	uc003bgc.2	-	4	494	c.442C>T	c.(442-444)CCC>TCC	p.P148S	SMC1B_uc003bgd.2_Missense_Mutation_p.P148S|SMC1B_uc003bge.1_5'UTR	NM_148674	NP_683515	Q8NDV3	SMC1B_HUMAN	SMC1 structural maintenance of chromosomes	148					chromosome organization|meiosis	chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nucleus	ATP binding			ovary(2)	2		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0182)		CTTTCTTTGGGTTTCTTCACT	0.328000													31	40					0	0	0.004289	0	0
PKDREJ	10343	broad.mit.edu	37	22	46658002	46658002	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr22:46658002C>T	uc003bhh.2	-	1	1218	c.1218G>A	c.(1216-1218)CTG>CTA	p.L406L		NM_006071	NP_006062	Q9NTG1	PKDRE_HUMAN	receptor for egg jelly-like protein precursor	406	Extracellular (Potential).|REJ.				acrosome reaction|neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity			breast(3)|ovary(2)	5		Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.00459)		AGGGCCATTTCAGATTGGCCT	0.512000													74	75					0	0	0.003610	0	0
CAMK1	8536	broad.mit.edu	37	3	9799267	9799267	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:9799267C>T	uc003bst.2	-	12	1247	c.1069G>A	c.(1069-1071)GAG>AAG	p.E357K	OGG1_uc003bsk.2_Intron|OGG1_uc003bsl.2_Intron|OGG1_uc003bsm.2_Intron|OGG1_uc003bsn.2_Intron|OGG1_uc003bso.2_Intron|CAMK1_uc003bsu.2_RNA|CAMK1_uc003bss.2_Nonsense_Mutation_p.W166*	NM_003656	NP_003647	Q14012	KCC1A_HUMAN	calcium/calmodulin-dependent protein kinase I	357					cell differentiation|nervous system development|positive regulation of muscle cell differentiation|signal transduction	cytoplasm|nucleus	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity			ovary(1)|skin(1)	2	Medulloblastoma(99;0.227)			OV - Ovarian serous cystadenocarcinoma(96;0.0475)		GTGCCCGGCTCCACGCAGCAG	0.687000													23	21					0	0	0.003330	0	0
SLC22A14	9389	broad.mit.edu	37	3	38347901	38347901	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:38347901C>T	uc010hhc.1	+	2	426	c.384C>T	c.(382-384)TTC>TTT	p.F128F	SLC22A14_uc003cia.2_Silent_p.F128F|SLC22A14_uc003cib.2_Silent_p.F128F|SLC22A14_uc011ayo.1_RNA	NM_004803	NP_004794	Q9Y267	S22AE_HUMAN	organic cation transporter like 4	128	Extracellular (Potential).					integral to plasma membrane	organic cation transmembrane transporter activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.0554)|Kidney(284;0.0696)		ATGGCAGTTTCCTGACATGCT	0.517000													74	74					0	0	0.003610	0	0
SCN5A	6331	broad.mit.edu	37	3	38591868	38591868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:38591868C>T	uc003cio.2	-	28	6189	c.5995G>A	c.(5995-5997)GAA>AAA	p.E1999K	SCN5A_uc003cin.2_Missense_Mutation_p.E1998K|SCN5A_uc003cil.3_Missense_Mutation_p.E1999K|SCN5A_uc010hhi.2_Missense_Mutation_p.E1981K|SCN5A_uc010hhk.2_Missense_Mutation_p.E1966K|SCN5A_uc011ayr.1_Missense_Mutation_p.E1945K	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1999					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GCGAGATCTTCACTGTGGCTG	0.592000													33	74					0	0	0.001287	0	0
SCN10A	6336	broad.mit.edu	37	3	38793763	38793763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:38793763C>T	uc003ciq.2	-	11	1702	c.1702G>A	c.(1702-1704)GAA>AAA	p.E568K		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha	568					sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	GGTTGGTGTTCATCTTCTCCA	0.607000													21	33					0	0	0.002780	0	0
SCN11A	11280	broad.mit.edu	37	3	38938701	38938701	+	Silent	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:38938701A>G	uc011ays.1	-	14	2237	c.2038T>C	c.(2038-2040)TTA>CTA	p.L680L	SCN11A_uc010hhn.1_5'Flank	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	680	Helical; Voltage-sensor; Name=S4 of repeat II; (By similarity).|II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GATTTGGCTAACTTGAAGACC	0.418000													17	10					0	0	0.001216	0	0
CDCP1	64866	broad.mit.edu	37	3	45127476	45127476	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:45127476A>C	uc003com.2	-	9	2300	c.2165T>G	c.(2164-2166)TTT>TGT	p.F722C		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	722	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		CCCTTTCTGAAACTTTTTTGG	0.473000													142	113					0	0	0.003610	0	0
SLC6A20	54716	broad.mit.edu	37	3	45807066	45807066	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:45807066C>T	uc011bai.1	-	8	1390	c.1266G>A	c.(1264-1266)AAG>AAA	p.K422K	SLC6A20_uc003cow.2_Silent_p.K72K|SLC6A20_uc011baj.1_Silent_p.K385K	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	422	Cytoplasmic (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		TGGAGATGATCTTGCTGTCTG	0.627000													16	7					0	0	0.003163	0	0
SLC6A20	54716	broad.mit.edu	37	3	45817403	45817403	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:45817403G>A	uc011bai.1	-	4	556	c.432C>T	c.(430-432)TCC>TCT	p.S144S	SLC6A20_uc011baj.1_Silent_p.S144S	NM_020208	NP_064593	Q9NP91	S6A20_HUMAN	solute carrier family 6, member 20 isoform 1	144	Extracellular (Potential).				cellular nitrogen compound metabolic process|glycine transport|proline transport	apical plasma membrane|integral to plasma membrane	amino acid transmembrane transporter activity|neurotransmitter:sodium symporter activity			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;0.01)|KIRC - Kidney renal clear cell carcinoma(197;0.0225)|Kidney(197;0.0267)		AGTACTGTGTGGAGGACGCCT	0.592000													40	116					0	0	0.002222	0	0
ALS2CL	259173	broad.mit.edu	37	3	46718410	46718410	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:46718410C>T	uc003cqa.1	-	17	2050	c.1860G>A	c.(1858-1860)GAG>GAA	p.E620E	ALS2CL_uc003cpx.1_5'UTR|ALS2CL_uc003cpy.1_RNA|ALS2CL_uc003cpz.1_Silent_p.E135E|ALS2CL_uc003cqb.1_Silent_p.E620E|ALS2CL_uc003cqc.1_RNA	NM_147129	NP_667340	Q60I27	AL2CL_HUMAN	ALS2 C-terminal like isoform 1	620					endosome organization|regulation of Rho protein signal transduction		GTPase activator activity|identical protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)|central_nervous_system(2)|skin(1)	5				BRCA - Breast invasive adenocarcinoma(193;0.000726)|KIRC - Kidney renal clear cell carcinoma(197;0.0171)|Kidney(197;0.0202)		CCAGCAGGGCCTCCTGCAGGT	0.657000													40	41					0	0	0.001485	0	0
BSN	8927	broad.mit.edu	37	3	49689898	49689898	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:49689898C>T	uc003cxe.3	+	5	3023	c.2909C>T	c.(2908-2910)TCC>TTC	p.S970F		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	970					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CTAACGGGCTCCCCTGAGGAC	0.627000													23	21					0	0	0.001882	0	0
PARP3	10039	broad.mit.edu	37	3	51980193	51980193	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:51980193C>T	uc003dby.2	+	9	1481	c.1110C>T	c.(1108-1110)TTC>TTT	p.F370F	PARP3_uc003dbz.2_Silent_p.F377F	NM_005485	NP_005476	Q9Y6F1	PARP3_HUMAN	poly (ADP-ribose) polymerase family, member 3	370	PARP catalytic.				DNA repair|protein ADP-ribosylation	centriole|nucleus	NAD+ ADP-ribosyltransferase activity|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AAGACAGATTCCAGGCCCACT	0.592000													32	76					0	0	0.003271	0	0
NEK4	6787	broad.mit.edu	37	3	52802597	52802597	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:52802597G>A	uc003dfq.3	-	2	306	c.117C>T	c.(115-117)CTC>CTT	p.L39L	NEK4_uc011bej.1_Intron|NEK4_uc003dfr.2_Silent_p.L39L	NM_003157	NP_003148	P51957	NEK4_HUMAN	NIMA-related kinase 4	39	Protein kinase.				cell division|mitosis	nucleus	ATP binding|metal ion binding|protein serine/threonine kinase activity			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;7.44e-05)|Kidney(197;0.000711)|KIRC - Kidney renal clear cell carcinoma(197;0.00086)|OV - Ovarian serous cystadenocarcinoma(275;0.0513)		AGGCATTTCGGAGGTTCAGTT	0.448000													71	71					0	0	0.003610	0	0
FAM107A	11170	broad.mit.edu	37	3	58555568	58555568	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:58555568C>T	uc003dkm.2	-	3	579	c.20G>A	c.(19-21)AGG>AAG	p.R7K	FAM107A_uc003dko.2_Missense_Mutation_p.R38K|FAM107A_uc003dkn.2_Missense_Mutation_p.R7K|FAM107A_uc010hnm.2_Missense_Mutation_p.R35K|FAM107A_uc003dkp.1_Missense_Mutation_p.R7K	NM_007177	NP_009108	O95990	F107A_HUMAN	downregulated in renal cell carcinoma	7					regulation of cell growth	nucleus	protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000189)|Kidney(10;0.000536)|KIRC - Kidney renal clear cell carcinoma(10;0.000716)|OV - Ovarian serous cystadenocarcinoma(275;0.154)		TGCCCGCTCCCTCTGGATCTC	0.562000													30	36					0	0	0.003755	0	0
PROS1	5627	broad.mit.edu	37	3	93611809	93611809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:93611809C>T	uc003drb.3	-	10	1464	c.1123G>A	c.(1123-1125)GGT>AGT	p.G375S	PROS1_uc010hoo.2_Missense_Mutation_p.G244S|PROS1_uc003dqz.3_Missense_Mutation_p.G244S	NM_000313	NP_000304	P07225	PROS_HUMAN	protein S, alpha preproprotein	375	Laminin G-like 1.				leukocyte migration|peptidyl-glutamic acid carboxylation|platelet activation|platelet degranulation|post-translational protein modification|proteolysis	endoplasmic reticulum membrane|extracellular region|Golgi lumen|Golgi membrane|platelet alpha granule lumen	calcium ion binding|endopeptidase inhibitor activity			large_intestine(1)	1					Antihemophilic Factor(DB00025)|Drotrecogin alfa(DB00055)|Menadione(DB00170)	ATAACATCACCTCCAGTTGTG	0.358000													18	25					0	0	0.002299	0	0
OR5AC2	81050	broad.mit.edu	37	3	97806419	97806419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:97806419C>T	uc011bgs.1	+	1	403	c.403C>T	c.(403-405)CCA>TCA	p.P135S		NM_054106	NP_473447	Q9NZP5	O5AC2_HUMAN	olfactory receptor, family 5, subfamily AC,	135	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1						CTTGCTTTATCCAGTGATGAT	0.423000													45	132					0	0	0.003610	0	0
CD47	961	broad.mit.edu	37	3	107779599	107779599	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:107779599G>A	uc003dwt.1	-	4	771	c.591C>T	c.(589-591)TTC>TTT	p.F197F	CD47_uc003dwu.1_Silent_p.F197F|CD47_uc003dwv.1_Silent_p.F197F|CD47_uc003dww.1_Silent_p.F197F	NM_001777	NP_001768	Q08722	CD47_HUMAN	CD47 antigen isoform 1 precursor	197	Helical; (Potential).				blood coagulation|cell adhesion|cell junction assembly|integrin-mediated signaling pathway|leukocyte migration|positive regulation of cell proliferation|positive regulation of cell-cell adhesion|positive regulation of T cell activation	integral to plasma membrane	protein binding|thrombospondin receptor activity			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(3;0.0191)|Epithelial(53;0.118)			TACCTGGGACGAAAAGAATGG	0.398000													7	16					0	0	0.003080	0	0
DPPA2	151871	broad.mit.edu	37	3	109019282	109019282	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:109019282C>T	uc003dxo.2	-	8	1102	c.855G>A	c.(853-855)AGG>AGA	p.R285R		NM_138815	NP_620170	Q7Z7J5	DPPA2_HUMAN	developmental pluripotency associated 2	285						nucleus	nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)	3						TCTTCTTATTCCTGTAAGGCA	0.284000													32	84					0	0	0.004289	0	0
POLQ	10721	broad.mit.edu	37	3	121251895	121251895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:121251895G>A	uc003eee.3	-	6	1031	c.902C>T	c.(901-903)TCC>TTC	p.S301F		NM_199420	NP_955452	O75417	DPOLQ_HUMAN	DNA polymerase theta	301					DNA repair|DNA replication	nucleoplasm	ATP binding|ATP-dependent helicase activity|damaged DNA binding|DNA-directed DNA polymerase activity|single-stranded DNA-dependent ATPase activity			ovary(4)|breast(3)|lung(2)|upper_aerodigestive_tract(1)|skin(1)	11				GBM - Glioblastoma multiforme(114;0.0915)		GTCATATATGGAATTTCCAAC	0.398000								DNA_polymerases_(catalytic_subunits)					13	47					0	0	0.003163	0	0
GRK7	131890	broad.mit.edu	37	3	141535598	141535598	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:141535598G>A	uc011bnd.1	+	4	1452	c.1368G>A	c.(1366-1368)ACG>ACA	p.T456T		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	456	AGC-kinase C-terminal.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TCTTTAAAACGATCAACTTTC	0.423000													17	54					0	0	0.004007	0	0
NMD3	51068	broad.mit.edu	37	3	160939835	160939835	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:160939835C>T	uc003feb.1	+	2	153	c.34C>T	c.(34-36)CCT>TCT	p.P12S	NMD3_uc003fec.2_Missense_Mutation_p.P12S|NMD3_uc003fed.1_Missense_Mutation_p.P12S	NM_015938	NP_057022	Q96D46	NMD3_HUMAN	NMD3 homolog	12					protein transport	cytoplasm|nucleolus|nucleoplasm				ovary(1)	1			Lung(72;0.00111)|LUSC - Lung squamous cell carcinoma(72;0.00156)			CGACCGCAGCCCTGGACACAT	0.413000													33	37					0	0	0.004878	0	0
POLR2H	5437	broad.mit.edu	37	3	184086028	184086028	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:184086028T>A	uc003fok.1	+	5	486	c.399T>A	c.(397-399)CAT>CAA	p.H133Q	POLR2H_uc003foj.1_RNA	NM_006232	NP_006223	P52434	RPAB3_HUMAN	RNA polymerase II, polypeptide H	133					mRNA capping|nuclear mRNA splicing, via spliceosome|positive regulation of viral transcription|protein phosphorylation|termination of RNA polymerase I transcription|termination of RNA polymerase III transcription|transcription elongation from RNA polymerase I promoter|transcription elongation from RNA polymerase II promoter|transcription elongation from RNA polymerase III promoter|transcription initiation from RNA polymerase I promoter|transcription initiation from RNA polymerase II promoter|transcription-coupled nucleotide-excision repair|viral reproduction	DNA-directed RNA polymerase II, core complex|nucleolus	DNA-directed RNA polymerase activity|protein binding|zinc ion binding				0	all_cancers(143;6.66e-11)|Ovarian(172;0.0339)		Epithelial(37;4.96e-33)|OV - Ovarian serous cystadenocarcinoma(80;2.72e-22)			ACAACCTGCATGGATTCGAGG	0.567000													64	52					0	0	0.003610	0	0
EPHB3	2049	broad.mit.edu	37	3	184295460	184295460	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:184295460C>T	uc003foz.2	+	7	1931	c.1494C>T	c.(1492-1494)GCC>GCT	p.A498A		NM_004443	NP_004434	P54753	EPHB3_HUMAN	ephrin receptor EphB3 precursor	498	Fibronectin type-III 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(5)|breast(2)|upper_aerodigestive_tract(1)|stomach(1)|skin(1)|ovary(1)	11	all_cancers(143;1.89e-10)|Ovarian(172;0.0339)		Epithelial(37;1.27e-34)|OV - Ovarian serous cystadenocarcinoma(80;3.8e-22)			AGGGCATCGCCTCCACAGTGA	0.657000													21	50					0	0	0.002299	0	0
TP63	8626	broad.mit.edu	37	3	189455644	189455644	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr3:189455644G>A	uc003fry.2	+	2	267	c.178G>A	c.(178-180)GAT>AAT	p.D60N	TP63_uc003frx.2_Missense_Mutation_p.D60N|TP63_uc003frz.2_Missense_Mutation_p.D60N|TP63_uc010hzc.1_Missense_Mutation_p.D60N	NM_003722	NP_003713	Q9H3D4	P63_HUMAN	tumor protein p63 isoform 1	60	Transcription activation.				anti-apoptosis|cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of transcription from RNA polymerase II promoter|Notch signaling pathway|positive regulation of Notch signaling pathway|protein homotetramerization|regulation of neuron apoptosis|response to gamma radiation|response to X-ray	chromatin|cytosol|dendrite|Golgi apparatus|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|identical protein binding|metal ion binding|p53 binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			skin(5)|lung(4)|ovary(2)|upper_aerodigestive_tract(1)	12	all_cancers(143;3.35e-10)|Ovarian(172;0.0925)		Lung(62;3.33e-05)	GBM - Glioblastoma multiforme(93;0.0227)		GCATATCTGGGATTTTCTGGA	0.388000									Hay-Wells_syndrome	HNSCC(45;0.13)			7	25					0	0	0.003080	0	0
ABCA11P	79963	broad.mit.edu	37	4	420497	420497	+	Missense_Mutation	SNP	G	A	A	rs139749429		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:420497G>A	uc003gae.2	-	5	944	c.409C>T	c.(409-411)CGT>TGT	p.R137C	ABCA11P_uc003gac.2_Missense_Mutation_p.R86C|ABCA11P_uc003gad.2_RNA|ABCA11P_uc011buv.1_3'UTR|ABCA11P_uc010ibd.1_Missense_Mutation_p.R137C					RecName: Full=Putative ATP-binding cassette sub-family A member 11;												0						AACACAAAACGAAACATTTCT	0.383000													18	17					0	0	0.001216	0	0
EVC	2121	broad.mit.edu	37	4	5747008	5747008	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:5747008C>T	uc003gil.1	+	7	1063	c.879C>T	c.(877-879)TAC>TAT	p.Y293Y	EVC_uc003gim.1_RNA	NM_153717	NP_714928	P57679	EVC_HUMAN	Ellis van Creveld syndrome protein	293					muscle organ development	integral to membrane				ovary(1)|skin(1)	2		Myeloproliferative disorder(84;0.117)				ACTCTGAGTACATCACCCTGG	0.428000													27	24					0	0	0.001271	0	0
KIAA0232	9778	broad.mit.edu	37	4	6864330	6864330	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:6864330G>T	uc003gjr.3	+	7	2684	c.2221G>T	c.(2221-2223)GAT>TAT	p.D741Y	KIAA0232_uc003gjq.3_Missense_Mutation_p.D741Y	NM_014743	NP_055558	Q92628	K0232_HUMAN	hypothetical protein LOC9778	741							ATP binding			ovary(2)	2						TAATGCCGAAGATATTAATTA	0.338000													6	25					5.9392e-07	2.90923e-06	0.001168	1	0
TLR6	10333	broad.mit.edu	37	4	38829302	38829302	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:38829302A>C	uc003gtm.2	-	1	1859	c.1793T>G	c.(1792-1794)TTG>TGG	p.L598W	TLR6_uc010ifg.1_Missense_Mutation_p.L598W	NM_006068	NP_006059	Q9Y2C9	TLR6_HUMAN	toll-like receptor 6 precursor	598	Helical; (Potential).				activation of NF-kappaB-inducing kinase activity|cellular response to diacyl bacterial lipopeptide|defense response to bacterium|detection of diacyl bacterial lipopeptide|inflammatory response|innate immune response|MyD88-dependent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of interleukin-6 biosynthetic process|positive regulation of JUN kinase activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	integral to plasma membrane|phagocytic vesicle membrane	lipopeptide binding|transmembrane receptor activity			ovary(2)	2						AGTCACAGCCAACACCAGCAT	0.522000													54	42					0	0	0.003610	0	0
PDS5A	23244	broad.mit.edu	37	4	39881417	39881417	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:39881417C>T	uc003guv.3	-	18	2463	c.1923G>A	c.(1921-1923)GGG>GGA	p.G641G	PDS5A_uc010ifo.2_Silent_p.G601G	NM_001100399	NP_001093869	Q29RF7	PDS5A_HUMAN	PDS5, regulator of cohesion maintenance, homolog	641					cell division|mitosis|negative regulation of DNA replication	chromatin|nucleus	identical protein binding				0						CATCTGCTGTCCCCTCTATTG	0.358000													23	44					0	0	0.002445	0	0
GABRA4	2557	broad.mit.edu	37	4	46976321	46976321	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:46976321C>T	uc003gxg.2	-	6	788	c.649G>A	c.(649-651)GAG>AAG	p.E217K		NM_000809	NP_000800	P48169	GBRA4_HUMAN	gamma-aminobutyric acid A receptor, alpha 4	217	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)	4					Alprazolam(DB00404)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	CTGGAAGACTCCTTCGGAACT	0.403000													5	0					0	0	0.000602	0	0
FRYL	285527	broad.mit.edu	37	4	48525101	48525101	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:48525101G>A	uc003gyh.1	-	54	7943	c.7338C>T	c.(7336-7338)TTC>TTT	p.F2446F	FRYL_uc003gyf.1_5'Flank|FRYL_uc003gyg.1_Silent_p.F1142F|FRYL_uc003gyi.1_Silent_p.F1334F|FRYL_uc003gyj.1_Silent_p.F741F	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	2446					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CTCCCCAGTTGAAATTGTCCA	0.448000													13	9					0	0	0.003163	0	0
ADAMTS3	9508	broad.mit.edu	37	4	73169642	73169642	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:73169642T>A	uc003hgk.1	-	17	2453	c.2416A>T	c.(2416-2418)ATT>TTT	p.I806F	ADAMTS3_uc003hgl.2_Missense_Mutation_p.I147F	NM_014243	NP_055058	O15072	ATS3_HUMAN	ADAM metallopeptidase with thrombospondin type 1	806	Spacer.				collagen catabolic process|collagen fibril organization|proteolysis	proteinaceous extracellular matrix	heparin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2			Epithelial(6;4.97e-05)|OV - Ovarian serous cystadenocarcinoma(6;5.66e-05)|all cancers(17;0.000486)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			ACCAAAACAATAACAGGATCA	0.368000													14	11					0	0	0.002450	0	0
RASSF6	166824	broad.mit.edu	37	4	74447996	74447996	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:74447996G>A	uc003hhd.1	-	7	798	c.675C>T	c.(673-675)TTC>TTT	p.F225F	RASSF6_uc003hhc.1_Silent_p.F193F|RASSF6_uc010iik.1_Intron|RASSF6_uc010iil.1_Silent_p.F181F	NM_201431	NP_958834	Q6ZTQ3	RASF6_HUMAN	Ras association (RalGDS/AF-6) domain family 6	225	Ras-associating.				apoptosis|signal transduction		protein binding			pancreas(2)	2	Breast(15;0.00102)		all cancers(17;0.00104)|Lung(101;0.128)|LUSC - Lung squamous cell carcinoma(112;0.187)			AGGCTGGAATGAAAATTGATG	0.284000													4	12					0	0	0.000602	0	0
PRKG2	5593	broad.mit.edu	37	4	82125774	82125774	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:82125774G>A	uc003hmh.2	-	1	442	c.428C>T	c.(427-429)TCC>TTC	p.S143F	PRKG2_uc011cch.1_Missense_Mutation_p.S143F	NM_006259	NP_006250	Q13237	KGP2_HUMAN	protein kinase, cGMP-dependent, type II	143					platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			breast(3)|central_nervous_system(2)|ovary(1)|large_intestine(1)	7						TTTCTCAAAGGAAAATTCAGG	0.453000													43	66					0	0	0.003610	0	0
GRID2	2895	broad.mit.edu	37	4	94316791	94316791	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:94316791G>A	uc011cdt.1	+	9	1537	c.1279G>A	c.(1279-1281)GGG>AGG	p.G427R	GRID2_uc011cdu.1_Missense_Mutation_p.G332R	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	427	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGGTCTGAATGGGTCACTGAC	0.433000													6	7					0	0	0.003080	0	0
ADH1B	125	broad.mit.edu	37	4	100234992	100234992	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:100234992G>A	uc003hus.3	-	6	898	c.814C>T	c.(814-816)CGG>TGG	p.R272W	ADH1A_uc011ceg.1_Intron|ADH1B_uc003hut.3_Missense_Mutation_p.R232W|ADH1B_uc011ceh.1_Missense_Mutation_p.R117W|ADH1B_uc011cei.1_Missense_Mutation_p.R232W	NM_000668	NP_000659	P00325	ADH1B_HUMAN	class I alcohol dehydrogenase, beta subunit	272					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase activity, zinc-dependent|zinc ion binding			ovary(1)|breast(1)	2				OV - Ovarian serous cystadenocarcinoma(123;1.02e-07)	Fomepizole(DB01213)|NADH(DB00157)	GTGTCAAGCCGACCGATGACT	0.423000													34	99					0	0	0.001951	0	0
ANK2	287	broad.mit.edu	37	4	114280158	114280158	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:114280158G>A	uc003ibe.3	+	38	10484	c.10384G>A	c.(10384-10386)GAA>AAA	p.E3462K	ANK2_uc003ibd.3_Intron|ANK2_uc003ibf.3_Intron|ANK2_uc011cgc.1_Intron|ANK2_uc003ibg.3_Intron|ANK2_uc003ibh.3_Intron|ANK2_uc011cgd.1_Missense_Mutation_p.E764K|ANK2_uc011cgb.1_Missense_Mutation_p.E3477K	NM_001148	NP_001139	Q01484	ANK2_HUMAN	ankyrin 2 isoform 1	3429					axon guidance|signal transduction	apical plasma membrane|basolateral plasma membrane|cytoskeleton|cytosol|sarcomere	protein binding|protein binding			central_nervous_system(7)|ovary(3)|large_intestine(2)|breast(1)|skin(1)	14		Ovarian(17;0.0448)|Hepatocellular(203;0.218)		OV - Ovarian serous cystadenocarcinoma(123;4.92e-05)		CCCCACAAAAGAAAGTAAGGA	0.453000													6	2					0	0	0.001168	0	0
ARSJ	79642	broad.mit.edu	37	4	114823685	114823685	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:114823685G>A	uc003ibq.1	-	2	2433	c.1545C>T	c.(1543-1545)ATC>ATT	p.I515I	ARSJ_uc010imu.1_Silent_p.I515I|ARSJ_uc010imv.1_Silent_p.I343I	NM_024590	NP_078866	Q5FYB0	ARSJ_HUMAN	arylsulfatase J precursor	515						extracellular region	arylsulfatase activity|metal ion binding			ovary(1)	1		Ovarian(17;0.0035)|Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.00194)		GCTTCTTCACGATTCCTGGAT	0.502000													11	40					0	0	0.000978	0	0
FAT4	79633	broad.mit.edu	37	4	126240396	126240396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:126240396G>A	uc003ifj.3	+	1	2830	c.2830G>A	c.(2830-2832)GAA>AAA	p.E944K		NM_024582	NP_078858	Q6V0I7	FAT4_HUMAN	FAT tumor suppressor homolog 4 precursor	944	Cadherin 9.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(9)|skin(5)|upper_aerodigestive_tract(2)|pancreas(2)	18						TGCTATCAATGAAAAGAATGG	0.483000													40	24					0	0	0.005524	0	0
GRIA2	2891	broad.mit.edu	37	4	158284155	158284155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:158284155G>A	uc003ipm.3	+	15	3070	c.2611G>A	c.(2611-2613)GAA>AAA	p.E871K	GRIA2_uc011cit.1_Missense_Mutation_p.E824K|GRIA2_uc003ipl.3_Missense_Mutation_p.E871K|GRIA2_uc003ipk.3_Missense_Mutation_p.E824K|GRIA2_uc011civ.1_RNA|GRIA2_uc011ciw.1_RNA|GRIA2_uc011cix.1_3'UTR|GRIA2_uc011ciy.1_3'UTR|GRIA2_uc011ciz.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	871	Cytoplasmic (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	AACTTATAAGGAAGGTTACAA	0.413000													17	10					0	0	0.001216	0	0
ZFP42	132625	broad.mit.edu	37	4	188924639	188924639	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr4:188924639C>T	uc003izg.1	+	3	923	c.678C>T	c.(676-678)TTC>TTT	p.F226F	ZFP42_uc003izh.1_Silent_p.F226F|ZFP42_uc003izi.1_Silent_p.F226F	NM_174900	NP_777560	Q96MM3	ZFP42_HUMAN	zinc finger protein 42	226	C2H2-type 2.				female gonad development|male gonad development|meiosis	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(14;6.2e-52)|all_epithelial(14;7.36e-37)|all_lung(41;2.29e-15)|Lung NSC(41;6.7e-15)|Breast(6;1.53e-05)|Melanoma(20;3.01e-05)|Hepatocellular(41;0.00335)|all_hematologic(60;0.014)|Renal(120;0.0183)|Prostate(90;0.0421)|Colorectal(36;0.227)		OV - Ovarian serous cystadenocarcinoma(60;1.54e-11)|BRCA - Breast invasive adenocarcinoma(30;4.21e-06)|GBM - Glioblastoma multiforme(59;8.93e-05)|STAD - Stomach adenocarcinoma(60;0.000279)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.157)		GGAAAGCGTTCGTTGAGAGCT	0.507000													25	63					0	0	0.001061	0	0
ADAMTS16	170690	broad.mit.edu	37	5	5232487	5232487	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:5232487C>G	uc003jdl.2	+	12	1846	c.1708C>G	c.(1708-1710)CGG>GGG	p.R570G	ADAMTS16_uc003jdk.1_Missense_Mutation_p.R570G|ADAMTS16_uc010itk.1_5'Flank	NM_139056	NP_620687	Q8TE57	ATS16_HUMAN	ADAM metallopeptidase with thrombospondin type 1	570	Disintegrin.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(3)|lung(2)|large_intestine(1)|breast(1)|pancreas(1)	8						TTAGTGGTGCCGGGGAGGACA	0.507000													20	37					0	0	0.001523	0	0
GOLPH3	64083	broad.mit.edu	37	5	32126608	32126608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:32126608G>A	uc003jhp.1	-	4	892	c.607C>T	c.(607-609)CCC>TCC	p.P203S		NM_022130	NP_071413	Q9H4A6	GOLP3_HUMAN	golgi phosphoprotein 3	203					cell proliferation|positive regulation of TOR signaling cascade|regulation of mitochondrion organization	cytosol|endosome|Golgi cisterna membrane|mitochondrial intermembrane space|plasma membrane|trans-Golgi network	protein binding			ovary(1)	1						TTGGTGAGGGGATGTGTTGTC	0.443000													17	52					0	0	0.001216	0	0
ADAMTS12	81792	broad.mit.edu	37	5	33751618	33751618	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:33751618G>A	uc003jia.1	-	3	688	c.525C>T	c.(523-525)TTC>TTT	p.F175F	ADAMTS12_uc010iuq.1_Silent_p.F175F|ADAMTS12_uc003jib.1_Silent_p.F175F	NM_030955	NP_112217	P58397	ATS12_HUMAN	ADAM metallopeptidase with thrombospondin type 1	175					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|kidney(1)	9						CGGGTTCAATGAAAAAGTCTC	0.418000										HNSCC(64;0.19)			23	22					0	0	0.004656	0	0
LMBRD2	92255	broad.mit.edu	37	5	36116632	36116632	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:36116632G>A	uc003jkb.1	-	11	1781	c.1366C>T	c.(1366-1368)CGT>TGT	p.R456C		NM_001007527	NP_001007528	Q68DH5	LMBD2_HUMAN	LMBR1 domain containing 2	456	Cytoplasmic (Potential).					integral to membrane					0	all_lung(31;0.000146)		Epithelial(62;0.0396)|Lung(74;0.111)|all cancers(62;0.115)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			TTAAATACACGAATCCTGAAC	0.348000													15	39					0	0	0.004990	0	0
GPR98	84059	broad.mit.edu	37	5	89979463	89979463	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:89979463C>T	uc003kju.2	+	28	5821	c.5725C>T	c.(5725-5727)CCT>TCT	p.P1909S	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	1909	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AGACTCTGATCCTGATGGTGA	0.413000													4	7					0	0	0.000248	0	0
FAM81B	153643	broad.mit.edu	37	5	94727130	94727130	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:94727130G>A	uc003kla.1	+	1	83	c.37G>A	c.(37-39)GAA>AAA	p.E13K	FAM81B_uc010jbe.1_5'Flank	NM_152548	NP_689761	Q96LP2	FA81B_HUMAN	hypothetical protein LOC153643	13										ovary(1)|skin(1)	2		all_cancers(142;1.1e-06)|all_epithelial(76;1.48e-09)|all_lung(232;0.000696)|Lung NSC(167;0.000947)|Ovarian(225;0.00473)		all cancers(79;1.04e-16)		GGCTTCCTCAGAAAAAAGAAA	0.373000													18	37					0	0	0.006122	0	0
ADAMTS19	171019	broad.mit.edu	37	5	128990052	128990052	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:128990052C>T	uc003kvb.1	+	14	2212	c.2212C>T	c.(2212-2214)CTA>TTA	p.L738L	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	738	Cys-rich.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		GCCTATTCTTCTATCAGAAAA	0.368000													23	14					0	0	0.005443	0	0
TXNDC15	79770	broad.mit.edu	37	5	134223431	134223431	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:134223431C>T	uc003lac.1	+	2	808	c.150C>T	c.(148-150)CAC>CAT	p.H50H	TXNDC15_uc010jdy.1_Intron|TXNDC15_uc011cxv.1_RNA	NM_024715	NP_078991	Q96J42	TXD15_HUMAN	disulfide isomerase precursor	50	Extracellular (Potential).				cell redox homeostasis	integral to membrane				ovary(1)|breast(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGCCTGCTCACCCTCTCCAGG	0.562000													7	40					0	0	0.003080	0	0
SPOCK1	6695	broad.mit.edu	37	5	136324265	136324265	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:136324265C>T	uc003lbo.2	-	7	965	c.774G>A	c.(772-774)ATG>ATA	p.M258I	SPOCK1_uc003lbp.2_Missense_Mutation_p.M258I	NM_004598	NP_004589	Q08629	TICN1_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	258					cell adhesion|cell proliferation|cellular component movement|nervous system development|signal transduction	proteinaceous extracellular matrix	calcium ion binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			GGTCATAGTTCATGTCCAACT	0.498000													11	39					0	0	0.000673	0	0
PCDHA5	56143	broad.mit.edu	37	5	140203664	140203664	+	Silent	SNP	C	T	T	rs149846106		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:140203664C>T	uc003lhl.2	+	1	2304	c.2304C>T	c.(2302-2304)CTC>CTT	p.L768L	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Silent_p.L768L|PCDHA5_uc003lhj.1_Silent_p.L768L	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	768	Cytoplasmic (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			AAACAGACCTCATGGCCTTCA	0.522000													14	40					0	0	0.004990	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255646	140255646	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:140255646C>T	uc003lic.2	+	1	716	c.589C>T	c.(589-591)CGG>TGG	p.R197W	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.R197W	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	197	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ATTAGTTCTTCGGAAGTTATT	0.348000													33	76					0	0	0.002096	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481216	140481216	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:140481216C>T	uc003lio.2	+	1	983	c.983C>T	c.(982-984)TCC>TTC	p.S328F	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	328	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GGAGGCCTATCCGGAAAGTCT	0.453000													26	66					0	0	0.005443	0	0
PCDHB6	56130	broad.mit.edu	37	5	140531956	140531956	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:140531956C>T	uc003lir.2	+	1	2118	c.2118C>T	c.(2116-2118)TTC>TTT	p.F706F	PCDHB6_uc011dah.1_Silent_p.F570F	NM_018939	NP_061762	Q9Y5E3	PCDB6_HUMAN	protocadherin beta 6 precursor	706	Helical; (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TGCTCCTGTTCGTGGCGGTGC	0.682000													99	88					0	0	0.003610	0	0
PCDHGC5	56097	broad.mit.edu	37	5	140869034	140869034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:140869034C>T	uc003lla.1	+	1	227	c.227C>T	c.(226-228)TCC>TTC	p.S76F	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc003lkf.1_Intron|PCDHGA9_uc003lkh.1_Intron|PCDHGB6_uc003lkj.1_Intron|PCDHGA10_uc003lkl.1_Intron|PCDHGB7_uc003lkn.1_Intron|PCDHGA11_uc003lkp.1_Intron|PCDHGA11_uc003lkq.1_Intron|PCDHGA12_uc003lkt.1_Intron|PCDHGC3_uc003lkv.1_Intron|PCDHGC3_uc003lkw.1_Intron|PCDHGC4_uc003lky.1_Intron|PCDHGC5_uc011dbc.1_Missense_Mutation_p.S76F	NM_018929	NP_061752	Q9Y5F6	PCDGM_HUMAN	protocadherin gamma subfamily C, 5 isoform 1	76	Extracellular (Potential).|Cadherin 1.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CGCTATTTTTCCCTGAGCTTG	0.552000													45	46					0	0	0.003610	0	0
PPP2R2B	5521	broad.mit.edu	37	5	145969654	145969654	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:145969654C>T	uc003loe.2	-	9	1713	c.1188G>A	c.(1186-1188)GGG>GGA	p.G396G	PPP2R2B_uc010jgm.2_Silent_p.G385G|PPP2R2B_uc003log.3_Silent_p.G396G|PPP2R2B_uc003lof.3_Silent_p.G396G|PPP2R2B_uc003loi.3_Silent_p.G399G|PPP2R2B_uc003loh.3_Silent_p.G396G|PPP2R2B_uc003loj.3_Silent_p.G376G|PPP2R2B_uc003lok.3_Silent_p.G385G|PPP2R2B_uc011dbu.1_Silent_p.G402G|PPP2R2B_uc011dbv.1_Silent_p.G454G	NM_004576	NP_004567	Q00005	2ABB_HUMAN	beta isoform of regulatory subunit B55, protein	396					apoptosis|signal transduction	cytoskeleton|mitochondrial outer membrane|protein phosphatase type 2A complex	protein binding|protein phosphatase type 2A regulator activity			ovary(1)|prostate(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TCCGCTTGCCCCCCACACACA	0.498000													43	29					0	0	0.003214	0	0
GRIA1	2890	broad.mit.edu	37	5	153077630	153077630	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:153077630G>A	uc003lva.3	+	9	1526	c.1161G>A	c.(1159-1161)AAG>AAA	p.K387K	GRIA1_uc003luy.3_Silent_p.K387K|GRIA1_uc003luz.3_Silent_p.K292K|GRIA1_uc011dcv.1_RNA|GRIA1_uc011dcw.1_Silent_p.K307K|GRIA1_uc011dcx.1_Silent_p.K318K|GRIA1_uc011dcy.1_Silent_p.K397K|GRIA1_uc011dcz.1_Silent_p.K397K|GRIA1_uc010jia.1_Silent_p.K367K	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	387	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	AAGATGATAAGTTTGTCCCTG	0.502000													11	3					0	0	0.003163	0	0
GEMIN5	25929	broad.mit.edu	37	5	154291305	154291305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr5:154291305G>A	uc003lvx.3	-	15	2232	c.2149C>T	c.(2149-2151)CAT>TAT	p.H717Y	GEMIN5_uc011ddk.1_Missense_Mutation_p.H716Y	NM_015465	NP_056280	Q8TEQ6	GEMI5_HUMAN	gemin 5	717	WD 13.				ncRNA metabolic process|protein complex assembly|spliceosomal snRNP assembly	Cajal body|cytosol|spliceosomal complex	protein binding|snRNA binding			skin(2)|ovary(1)	3	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			GGCCGGGAATGATCTTGCATG	0.453000													24	61					0	0	0.001271	0	0
SLC22A23	63027	broad.mit.edu	37	6	3287256	3287256	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:3287256G>A	uc003mvm.3	-	7	1383	c.1383C>T	c.(1381-1383)CTC>CTT	p.L461L	uc003mvi.1_RNA|SLC22A23_uc003mvn.3_Silent_p.L180L|SLC22A23_uc003mvo.3_Silent_p.L180L|SLC22A23_uc003mvp.1_RNA|SLC22A23_uc010jnn.2_Silent_p.L461L|SLC22A23_uc003mvq.1_RNA	NM_015482	NP_056297	A1A5C7	S22AN_HUMAN	solute carrier family 22, member 23 isoform a	461					ion transport	integral to membrane	transmembrane transporter activity			ovary(1)	1	Ovarian(93;0.0493)	all_hematologic(90;0.0905)				AGTTCTCCAGGAGCGGCACCT	0.632000													13	46					0	0	0.004007	0	0
TXNDC5	81567	broad.mit.edu	37	6	7904916	7904917	+	Silent	DNP	GG	AA	AA			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:7904916_7904917GG>AA	uc003mxv.2	-	2	335_336	c.303_304CC>TT	c.(301-306)GACCTG>GATTTG	p.101_102DL>DL	TXNDC5_uc003mxw.2_Silent_p.58_59DL>DL|TXNDC5_uc010jnz.2_5'UTR|TXNDC5_uc010joa.1_5'UTR	NM_030810	NP_110437	Q8NBS9	TXND5_HUMAN	thioredoxin domain containing 5 isoform 1	101_102	Thioredoxin 1.				anti-apoptosis|cell redox homeostasis|cellular membrane organization|glycerol ether metabolic process|post-Golgi vesicle-mediated transport	endoplasmic reticulum lumen|lysosomal lumen	electron carrier activity|isomerase activity|protein disulfide oxidoreductase activity				0	Ovarian(93;0.0398)					TTGTCTCCCAGGTCATTCCAAG	0.574000													14	68					0	0	0.004672	0	0
TDP2	51567	broad.mit.edu	37	6	24653343	24653343	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:24653343G>A	uc003nej.2	-	6	700	c.675C>T	c.(673-675)TCC>TCT	p.S225S	TDP2_uc003nei.2_Silent_p.S113S|TDP2_uc010jpu.1_Silent_p.S225S	NM_016614	NP_057698	O95551	TYDP2_HUMAN	TRAF and TNF receptor-associated protein	225					cell surface receptor linked signaling pathway|double-strand break repair	PML body	5'-tyrosyl-DNA phosphodiesterase activity|magnesium ion binding|nuclease activity|protein binding|transcription corepressor activity			ovary(1)|lung(1)	2						TCTCCAAATGGGATGTCATAA	0.403000								Direct_reversal_of_damage|Editing_and_processing_nucleases					63	338					0	0	0.003610	0	0
HIST1H2AA	221613	broad.mit.edu	37	6	25726520	25726520	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:25726520A>T	uc003nfc.2	-	1	271	c.236T>A	c.(235-237)ATT>AAT	p.I79N	HIST1H2BA_uc003nfd.2_5'Flank	NM_170745	NP_734466	Q96QV6	H2A1A_HUMAN	histone cluster 1, H2aa	79					nucleosome assembly	nucleosome|nucleus	DNA binding				0						GCGGGGAATAATGCGAGTTTT	0.532000													74	44					0	0	0.003610	0	0
OR2B2	81697	broad.mit.edu	37	6	27879876	27879876	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:27879876G>A	uc011dkw.1	-	1	222	c.222C>T	c.(220-222)ACC>ACT	p.T74T		NM_033057	NP_149046	Q9GZK3	OR2B2_HUMAN	olfactory receptor, family 2, subfamily B,	74	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CTGTACTTGTGGTATAGCAAA	0.428000													18	46					0	0	0.001216	0	0
OR2J3	442186	broad.mit.edu	37	6	29080273	29080273	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:29080273C>T	uc011dll.1	+	1	606	c.606C>T	c.(604-606)CTC>CTT	p.L202L		NM_001005216	NP_001005216	O76001	OR2J3_HUMAN	olfactory receptor, family 2, subfamily J,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGCTGACCCTCATGATCACAA	0.463000													21	31					0	0	0.001882	0	0
TRIM31	11074	broad.mit.edu	37	6	30079500	30079500	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:30079500G>A	uc003npg.1	-	3	548	c.438C>T	c.(436-438)ATC>ATT	p.I146I	TRIM31_uc003npi.3_RNA	NM_007028	NP_008959	Q9BZY9	TRI31_HUMAN	tripartite motif protein 31	146	Potential.					mitochondrion	ligase activity|zinc ion binding			lung(1)	1						GCAAGACTTGGATCTGCTCTT	0.512000													171	73					0	0	0.003610	0	0
AGPAT1	10554	broad.mit.edu	37	6	32137188	32137188	+	Silent	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:32137188C>A	uc003oae.2	-	7	1035	c.717G>T	c.(715-717)ACG>ACT	p.T239T	PPT2_uc003nzy.1_RNA|AGPAT1_uc011dpj.1_RNA|AGPAT1_uc011dpk.1_Silent_p.T203T|AGPAT1_uc003oaf.2_Silent_p.T239T|AGPAT1_uc003oag.2_Silent_p.T129T|AGPAT1_uc003oah.2_Silent_p.T239T|AGPAT1_uc003oai.1_Silent_p.T239T|AGPAT1_uc011dpl.1_Silent_p.T127T	NM_006411	NP_006402	Q99943	PLCA_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 1	239					energy reserve metabolic process|phosphatidic acid biosynthetic process|positive regulation of cellular metabolic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity			central_nervous_system(1)	1						TCAGCCCTTCCGTGGGCACTG	0.637000													11	698					0.000673444	0.00327553	0.000673	1	0
SCUBE3	222663	broad.mit.edu	37	6	35212587	35212587	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:35212587G>A	uc003okf.1	+	18	2406	c.2400G>A	c.(2398-2400)AAG>AAA	p.K800K	SCUBE3_uc003okg.1_Silent_p.K799K|SCUBE3_uc003okh.1_Silent_p.K687K	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	800					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CCCAATGCAAGAGTACGTGGC	0.577000													24	144					0	0	0.002780	0	0
FGD2	221472	broad.mit.edu	37	6	36982814	36982814	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:36982814G>A	uc010jwp.1	+	8	1200	c.1029G>A	c.(1027-1029)TTG>TTA	p.L343L	FGD2_uc003ong.2_Silent_p.L65L|FGD2_uc011dtv.1_5'UTR|FGD2_uc003oni.1_Silent_p.L149L	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	343	PH 1.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						ACCTTTTCTTGGTAAGAGGGT	0.617000													21	29					0	0	0.003330	0	0
DNAH8	1769	broad.mit.edu	37	6	38828393	38828393	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:38828393C>T	uc003ooe.1	+	41	6068	c.5468C>T	c.(5467-5469)CCA>CTA	p.P1823L		NM_001371	NP_001362			dynein, axonemal, heavy polypeptide 8											skin(8)|ovary(7)|lung(2)|large_intestine(1)|central_nervous_system(1)|kidney(1)|pancreas(1)	21						GTTATCACTCCATTAACAGAT	0.284000													11	74					0	0	0.001368	0	0
PTCRA	171558	broad.mit.edu	37	6	42890785	42890785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:42890785C>T	uc003osx.2	+	2	160	c.79C>T	c.(79-81)CCT>TCT	p.P27S	PTCRA_uc011duz.1_Silent_p.F37F|PTCRA_uc010jxx.1_Intron|PTCRA_uc010jxy.2_Intron|PTCRA_uc010jxz.2_Intron	NM_138296	NP_612153	Q6ISU1	PTCRA_HUMAN	pre T-cell antigen receptor alpha precursor	27	Extracellular (Potential).					integral to membrane	receptor activity			ovary(2)	2	Colorectal(47;0.196)		all cancers(41;0.000731)|Colorectal(64;0.00237)|COAD - Colon adenocarcinoma(64;0.00473)|KIRC - Kidney renal clear cell carcinoma(15;0.02)|OV - Ovarian serous cystadenocarcinoma(102;0.0218)|Kidney(15;0.0388)			CACACCCTTTCCTTCTCTGGC	0.587000													34	72					0	0	0.003755	0	0
ABCC10	89845	broad.mit.edu	37	6	43399895	43399895	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:43399895C>T	uc003ouy.1	+	3	392	c.177C>T	c.(175-177)ATC>ATT	p.I59I	ABCC10_uc003ouz.1_Silent_p.I16I	NM_033450	NP_258261	Q5T3U5	MRP7_HUMAN	ATP-binding cassette, sub-family C, member 10	59						integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(6)|central_nervous_system(1)	7	all_lung(25;0.00536)		Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0152)|OV - Ovarian serous cystadenocarcinoma(102;0.0804)			CAGATTACATCCTACCCTGCA	0.567000													25	48					0	0	0.004656	0	0
MEP1A	4224	broad.mit.edu	37	6	46761430	46761430	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:46761430A>T	uc010jzh.1	+	3	164	c.122A>T	c.(121-123)AAG>ATG	p.K41M	MEP1A_uc011dwg.1_Translation_Start_Site|MEP1A_uc011dwh.1_Missense_Mutation_p.K69M|MEP1A_uc011dwi.1_Translation_Start_Site	NM_005588	NP_005579	Q16819	MEP1A_HUMAN	meprin A alpha precursor	41					digestion|proteolysis	extracellular space|integral to plasma membrane|soluble fraction	metalloendopeptidase activity|zinc ion binding			pancreas(2)|ovary(1)	3			Lung(136;0.192)			GGTGAACAGAAGGATATTTCA	0.323000													5	16					0	0	0.004482	0	0
FAM83B	222584	broad.mit.edu	37	6	54735239	54735239	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:54735239G>A	uc003pck.2	+	2	311	c.195G>A	c.(193-195)TTG>TTA	p.L65L		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	65										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					ATTATATTTTGAAAAATGTCC	0.393000													15	31					0	0	0.002450	0	0
BAI3	577	broad.mit.edu	37	6	69785900	69785900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:69785900C>T	uc003pev.3	+	17	2898	c.2450C>T	c.(2449-2451)CCC>CTC	p.P817L	BAI3_uc010kak.2_Missense_Mutation_p.P817L	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	817	GPS.|Extracellular (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				ACTTTGAATCCCTATTGTGTA	0.333000													14	18					0	0	0.000958	0	0
GRIK2	2898	broad.mit.edu	37	6	102372574	102372574	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:102372574T>C	uc003pqp.3	+	12	2096	c.1847T>C	c.(1846-1848)GTT>GCT	p.V616A	GRIK2_uc003pqo.3_Missense_Mutation_p.V616A|GRIK2_uc010kcw.2_Missense_Mutation_p.V616A	NM_021956	NP_068775	Q13002	GRIK2_HUMAN	glutamate receptor, ionotropic, kainate 2	616	Cytoplasmic (Potential).				glutamate signaling pathway|induction of programmed cell death in response to chemical stimulus|neuron apoptosis|positive regulation of synaptic transmission|regulation of short-term neuronal synaptic plasticity	cell junction|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			ovary(2)|pancreas(1)|breast(1)|skin(1)	5		all_cancers(76;1.19e-07)|Acute lymphoblastic leukemia(125;6.17e-11)|all_hematologic(75;6.01e-08)|all_epithelial(87;0.0121)|Colorectal(196;0.14)		all cancers(137;0.112)|BRCA - Breast invasive adenocarcinoma(108;0.124)|GBM - Glioblastoma multiforme(226;0.206)	L-Glutamic Acid(DB00142)	TGGTTTGGAGTTGGAGCTCTC	0.473000													6	4					0	0	0.001984	0	0
SYNE1	23345	broad.mit.edu	37	6	152826510	152826510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:152826510C>T	uc010kiw.2	-	9	1206	c.604G>A	c.(604-606)GAT>AAT	p.D202N	SYNE1_uc003qot.3_Missense_Mutation_p.D209N|SYNE1_uc003qou.3_Missense_Mutation_p.D202N|SYNE1_uc010kjb.1_Missense_Mutation_p.D202N|SYNE1_uc003qpa.1_Missense_Mutation_p.D202N	NM_182961	NP_892006	Q8NF91	SYNE1_HUMAN	spectrin repeat containing, nuclear envelope 1	202	Actin-binding.|CH 2.|Cytoplasmic (Potential).				cell death|cytoskeletal anchoring at nuclear membrane|Golgi organization|muscle cell differentiation|nuclear matrix anchoring at nuclear membrane	cytoskeleton|Golgi apparatus|integral to membrane|nuclear outer membrane|postsynaptic membrane|sarcomere|SUN-KASH complex	actin binding|lamin binding			central_nervous_system(15)|upper_aerodigestive_tract(9)|ovary(8)|skin(6)|large_intestine(5)|pancreas(2)	45		Ovarian(120;0.0955)	BRCA - Breast invasive adenocarcinoma(37;0.243)	OV - Ovarian serous cystadenocarcinoma(155;2.24e-10)		TTCCCAAAATCTTTTACTTCT	0.403000										HNSCC(10;0.0054)			7	9					0	0	0.001984	0	0
OPRM1	4988	broad.mit.edu	37	6	154412478	154412478	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:154412478C>T	uc003qpr.2	+	3	1272	c.1035C>T	c.(1033-1035)TTC>TTT	p.F345F	OPRM1_uc011efc.1_Silent_p.F264F|OPRM1_uc011efd.1_Silent_p.F245F|OPRM1_uc011efe.1_Silent_p.F438F|OPRM1_uc003qpn.2_Silent_p.F345F|OPRM1_uc003qpo.1_Silent_p.F345F|OPRM1_uc011eff.1_Silent_p.F345F|OPRM1_uc011efg.1_Silent_p.F345F|OPRM1_uc011efh.1_Silent_p.F345F|OPRM1_uc003qpq.1_Silent_p.F345F|OPRM1_uc003qpt.1_Silent_p.F345F|OPRM1_uc011efi.1_Silent_p.F345F|OPRM1_uc003qpp.2_RNA|OPRM1_uc003qps.2_RNA|OPRM1_uc010kjg.2_Silent_p.F245F|OPRM1_uc003qpu.2_Silent_p.F245F	NM_000914	NP_000905	P35372	OPRM_HUMAN	opioid receptor, mu 1 isoform MOR-1	345	Cytoplasmic (Potential).				behavior|negative regulation of cell proliferation|sensory perception	endoplasmic reticulum|Golgi apparatus|integral to plasma membrane	mu-opioid receptor activity|protein binding			ovary(1)	1		Ovarian(120;0.196)		OV - Ovarian serous cystadenocarcinoma(155;9.26e-11)|BRCA - Breast invasive adenocarcinoma(81;0.0154)	Alfentanil(DB00802)|Anileridine(DB00913)|Buprenorphine(DB00921)|Butorphanol(DB00611)|Codeine(DB00318)|Dezocine(DB01209)|Diphenoxylate(DB01081)|Fentanyl(DB00813)|Hydrocodone(DB00956)|Hydromorphone(DB00327)|Levallorphan(DB00504)|Levomethadyl Acetate(DB01227)|Levorphanol(DB00854)|Loperamide(DB00836)|Methadone(DB00333)|Methadyl Acetate(DB01433)|Morphine(DB00295)|Nalbuphine(DB00844)|Naloxone(DB01183)|Naltrexone(DB00704)|Oxycodone(DB00497)|Oxymorphone(DB01192)|Pentazocine(DB00652)|Propoxyphene(DB00647)|Remifentanil(DB00899)|Sufentanil(DB00708)|Tramadol(DB00193)	ATGAAAACTTCAAACGATGCT	0.458000													19	7					0	0	0.000958	0	0
TAGAP	117289	broad.mit.edu	37	6	159462447	159462447	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:159462447T>C	uc003qrz.2	-	6	748	c.416A>G	c.(415-417)AAC>AGC	p.N139S	TAGAP_uc011eft.1_Missense_Mutation_p.N76S|TAGAP_uc003qsa.2_5'UTR|TAGAP_uc003qsb.2_Missense_Mutation_p.N139S|uc003qsc.2_5'Flank	NM_054114	NP_473455	Q8N103	TAGAP_HUMAN	T-cell activation Rho GTPase-activating protein	139	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|guanyl-nucleotide exchange factor activity			ovary(1)	1		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.16e-16)|BRCA - Breast invasive adenocarcinoma(81;5.87e-06)		ATCCCCAGAGTTGAGCTCCTC	0.537000													17	10					0	0	0.004990	0	0
THBS2	7058	broad.mit.edu	37	6	169640626	169640626	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:169640626G>C	uc003qwt.2	-	7	1201	c.953C>G	c.(952-954)TCA>TGA	p.S318*		NM_003247	NP_003238	P35442	TSP2_HUMAN	thrombospondin 2 precursor	318	VWFC.				cell adhesion	extracellular region	calcium ion binding|heparin binding|protein binding|structural molecule activity			ovary(5)	5		Breast(66;1.78e-05)|Ovarian(120;0.0728)|Esophageal squamous(34;0.247)		OV - Ovarian serous cystadenocarcinoma(33;1.85e-21)|BRCA - Breast invasive adenocarcinoma(81;1.43e-06)|GBM - Glioblastoma multiforme(31;0.000379)		CCAGCAAGCTGACATGTTCCT	0.498000													21	17					0	0	0.003330	0	0
FSCN1	6624	broad.mit.edu	37	7	5643196	5643196	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:5643196G>C	uc003sou.2	+	3	1173	c.1059G>C	c.(1057-1059)AAG>AAC	p.K353N	FSCN1_uc003sov.2_Missense_Mutation_p.K75N|FSCN1_uc003sow.2_Missense_Mutation_p.K75N	NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	353					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		CCAATGGCAAGTTTGTGACCT	0.622000													16	119					0	0	0.004007	0	0
PMS2CL	441194	broad.mit.edu	37	7	6777283	6777283	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:6777283C>A	uc011jxb.1	+	5	1337	c.563C>A	c.(562-564)CCA>CAA	p.P188Q	PMS2CL_uc003squ.2_RNA|PMS2CL_uc003sqv.1_RNA					SubName: Full=cDNA FLJ60281, highly similar to PMS1 protein homolog 2;												0						CTCACATCCCCAAACACAAAA	0.388000													7	149					0.00198382	0.00953706	0.001984	1	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146119	31146119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:31146119G>A	uc003tca.1	+	16	1451	c.1228G>A	c.(1228-1230)GAG>AAG	p.E410K	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.E389K|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.E438K|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.E438K|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.E437K|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	410	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GGTACAAGCGGAGATCAAGCG	0.617000													36	21					0	0	0.001485	0	0
TNS3	64759	broad.mit.edu	37	7	47384617	47384617	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:47384617G>A	uc003tnv.2	-	19	2838	c.2471C>T	c.(2470-2472)CCC>CTC	p.P824L	TNS3_uc003tnw.2_Missense_Mutation_p.P824L	NM_022748	NP_073585	Q68CZ2	TENS3_HUMAN	tensin 3	824						focal adhesion	protein binding			ovary(4)	4						GAGGTCCTGGGGATAGCCAGG	0.502000													18	87					0	0	0.001216	0	0
UPP1	7378	broad.mit.edu	37	7	48146546	48146546	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:48146546C>T	uc003toj.2	+	8	1042	c.513C>T	c.(511-513)GTC>GTT	p.V171V	UPP1_uc003tok.2_Silent_p.V171V|UPP1_uc003tol.2_Silent_p.V171V|UPP1_uc011kch.1_5'UTR|UPP1_uc003ton.2_Silent_p.V34V|UPP1_uc003too.2_Silent_p.V34V	NM_181597	NP_853628	Q16831	UPP1_HUMAN	uridine phosphorylase 1	171					nucleotide catabolic process|pyrimidine base metabolic process|pyrimidine nucleoside catabolic process|pyrimidine nucleoside salvage	cytosol	uridine phosphorylase activity				0						AGCAGATTGTCCTGGGGAAGC	0.542000													28	118					0	0	0.001271	0	0
GNAI1	2770	broad.mit.edu	37	7	79818515	79818515	+	Silent	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:79818515T>C	uc003uhb.1	+	3	608	c.271T>C	c.(271-273)TTG>CTG	p.L91L	GNAI1_uc011kgt.1_Silent_p.L39L	NM_002069	NP_002060	P63096	GNAI1_HUMAN	guanine nucleotide binding protein (G protein),	91					cell cycle|cell division|inhibition of adenylate cyclase activity by G-protein signaling pathway|platelet activation|synaptic transmission	centrosome|heterotrimeric G-protein complex|midbody|nucleus	G-protein beta/gamma-subunit complex binding|GTP binding|metabotropic serotonin receptor binding|signal transducer activity			upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						TATGGGGAGGTTGAAGATAGA	0.408000													13	15					0	0	0.006122	0	0
AZGP1	563	broad.mit.edu	37	7	99564768	99564768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:99564768C>T	uc003ush.2	-	4	799	c.755G>A	c.(754-756)GGA>GAA	p.G252E		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	252	Ig-like C1-type.				antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					AAGAACATCTCCCCGTAACTC	0.582000													8	44					0	0	0.000673	0	0
PMPCB	9512	broad.mit.edu	37	7	102937950	102937950	+	Missense_Mutation	SNP	G	A	A	rs1060201		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:102937950G>A	uc003vbl.2	+	1	78	c.44G>A	c.(43-45)CGG>CAG	p.R15Q	PMPCB_uc010liu.1_Missense_Mutation_p.R15Q|PMPCB_uc003vbk.1_Missense_Mutation_p.R15Q|PMPCB_uc003vbm.2_5'UTR|PMPCB_uc010liv.2_5'UTR|PMPCB_uc010liw.2_5'UTR|PMPCB_uc011kll.1_5'UTR|PMPCB_uc011klm.1_5'Flank	NM_004279	NP_004270	O75439	MPPB_HUMAN	mitochondrial processing peptidase beta subunit	15					proteolysis	mitochondrial matrix	metalloendopeptidase activity|zinc ion binding			ovary(4)	4						TCCGCGGCGCGGCGGCGGCTC	0.647000											OREG0018240	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	89	34					0	0	0.003610	0	0
SLC26A3	1811	broad.mit.edu	37	7	107415259	107415259	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:107415259C>T	uc003ver.2	-	16	1947	c.1736G>A	c.(1735-1737)CGA>CAA	p.R579Q	SLC26A3_uc003ves.2_Missense_Mutation_p.R544Q	NM_000111	NP_000102	P40879	S26A3_HUMAN	solute carrier family 26, member 3	579	STAS.				excretion	integral to membrane|membrane fraction	inorganic anion exchanger activity|secondary active sulfate transmembrane transporter activity|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			ovary(3)|skin(1)	4						CTGCAGTTTTCGGATTTTCCT	0.408000													36	14					0	0	0.005524	0	0
TAS2R16	50833	broad.mit.edu	37	7	122635000	122635000	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:122635000G>A	uc003vkl.1	-	1	755	c.689C>T	c.(688-690)GCC>GTC	p.A230V		NM_016945	NP_058641	Q9NYV7	T2R16_HUMAN	taste receptor T2R16	230	Helical; Name=6; (Potential).				detection of chemical stimulus involved in sensory perception of bitter taste	endoplasmic reticulum|external side of plasma membrane|trans-Golgi network	bitter taste receptor activity|protein binding			ovary(1)|skin(1)	2						AAATAAGACGGCAAGGGACCT	0.433000													21	11					0	0	0.001882	0	0
ASB15	142685	broad.mit.edu	37	7	123264737	123264737	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:123264737G>A	uc003vku.1	+	8	858	c.566G>A	c.(565-567)CGA>CAA	p.R189Q	ASB15_uc003vkv.1_Missense_Mutation_p.R189Q|ASB15_uc003vkw.1_Missense_Mutation_p.R189Q	NM_080928	NP_563616	Q8WXK1	ASB15_HUMAN	ankyrin repeat and SOCS box-containing 15	189	ANK 3.				intracellular signal transduction					skin(2)|lung(1)	3						AAGCAAGGCCGAAAAGATATC	0.512000											OREG0018282	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	19	85					0	0	0.001523	0	0
HYAL4	23553	broad.mit.edu	37	7	123516965	123516965	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:123516965A>G	uc003vlc.2	+	5	1840	c.1202A>G	c.(1201-1203)AAC>AGC	p.N401S	HYAL4_uc011knz.1_3'UTR	NM_012269	NP_036401	Q2M3T9	HYAL4_HUMAN	hyaluronoglucosaminidase 4	401	Extracellular (Potential).				fusion of sperm to egg plasma membrane|glycosaminoglycan catabolic process	integral to membrane	hyalurononglucosaminidase activity			skin(1)	1						CTTCACTTGAACCCTGCAAGT	0.502000													14	71					0	0	0.004990	0	0
GRM8	2918	broad.mit.edu	37	7	126883108	126883108	+	Missense_Mutation	SNP	G	A	A	rs149971619		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:126883108G>A	uc003vlr.2	-	1	462	c.151C>T	c.(151-153)CTC>TTC	p.L51F	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.L51F|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	51	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ACAGGGAAGAGACCCCCCAAA	0.522000										HNSCC(24;0.065)			11	50					0	0	0.000978	0	0
METTL2B	55798	broad.mit.edu	37	7	128120732	128120732	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:128120732C>T	uc003vnf.2	+	4	627	c.590C>T	c.(589-591)CCA>CTA	p.P197L	METTL2B_uc003vng.2_Missense_Mutation_p.P132L|METTL2B_uc011kop.1_Missense_Mutation_p.P61L	NM_018396	NP_060866	Q6P1Q9	MTL2B_HUMAN	methyltransferase like 2B	197							methyltransferase activity			skin(1)	1						ACAGTCTTTCCAATTTTACAA	0.303000													17	96					0	0	0.001786	0	0
FLNC	2318	broad.mit.edu	37	7	128490469	128490469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:128490469C>T	uc003vnz.3	+	32	5539	c.5330C>T	c.(5329-5331)CCA>CTA	p.P1777L	FLNC_uc003voa.3_Missense_Mutation_p.P1744L	NM_001458	NP_001449	Q14315	FLNC_HUMAN	gamma filamin isoform a	1777	Filamin 16.				cell junction assembly	cytoskeleton|cytosol|plasma membrane|sarcomere	actin binding			breast(5)|large_intestine(3)|ovary(2)|central_nervous_system(1)|skin(1)	12						CCTGTGGAGCCAATGGAGTCC	0.607000													37	192					0	0	0.002852	0	0
ZC3HC1	51530	broad.mit.edu	37	7	129668810	129668810	+	Missense_Mutation	SNP	G	A	A	rs143076145	byFrequency	TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:129668810G>A	uc003vpi.2	-	5	580	c.553C>T	c.(553-555)CGT>TGT	p.R185C	ZC3HC1_uc003vph.2_Missense_Mutation_p.R72C|ZC3HC1_uc010lma.2_Missense_Mutation_p.R72C	NM_016478	NP_057562	Q86WB0	NIPA_HUMAN	zinc finger, C3HC type 1	185	F-box-like.				cell division|mitosis	nucleus	protein kinase binding|zinc ion binding				0	Melanoma(18;0.0435)					CTTTGAAAACGATCTAGGAAT	0.443000													56	30					0	0	0.003610	0	0
KLHDC10	23008	broad.mit.edu	37	7	129736814	129736814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:129736814C>T	uc003vpj.1	+	2	355	c.220C>T	c.(220-222)CCC>TCC	p.P74S	KLHDC10_uc003vpk.1_Intron|KLHDC10_uc010lmb.1_Intron	NM_014997	NP_055812	Q6PID8	KLD10_HUMAN	kelch domain containing 10	74											0						TCAGTCCTGTCCCATCATAAG	0.408000													24	93					0	0	0.001271	0	0
DGKI	9162	broad.mit.edu	37	7	137150748	137150748	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:137150748C>T	uc003vtt.2	-	27	2543	c.2542G>A	c.(2542-2544)GAT>AAT	p.D848N	DGKI_uc003vtu.2_Missense_Mutation_p.D558N	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	848					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						AAAATCTCATCTTGGGAAATC	0.473000													14	99					0	0	0.006122	0	0
HIPK2	28996	broad.mit.edu	37	7	139258123	139258123	+	Silent	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:139258123C>A	uc003vvf.3	-	15	3321	c.3147G>T	c.(3145-3147)ACG>ACT	p.T1049T	HIPK2_uc003vvd.3_Silent_p.T1022T	NM_022740	NP_073577	Q9H2X6	HIPK2_HUMAN	homeodomain interacting protein kinase 2 isoform	1049	Autoinhibitory domain (AID).|Interaction with AXIN1 (By similarity).				apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation of BMP signaling pathway|positive regulation of JNK cascade|positive regulation of transforming growth factor beta receptor signaling pathway|SMAD protein signal transduction|transcription, DNA-dependent|virus-host interaction	centrosome|nuclear membrane|PML body	ATP binding|protein serine/threonine kinase activity|SMAD binding|transcription corepressor activity|virion binding			ovary(3)|central_nervous_system(3)|skin(1)	7	Melanoma(164;0.205)					CAGTGCGGTCCGTGGTGATGT	0.537000													6	103					0.00198382	0.00953706	0.001984	1	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				27	14					0	0	0.001786	0	0
MGAM	8972	broad.mit.edu	37	7	141754560	141754560	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:141754560G>A	uc003vwy.2	+	27	3220	c.3166G>A	c.(3166-3168)GAT>AAT	p.D1056N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1056	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CTAGATTTATGATCCCAACAA	0.418000													73	26					0	0	0.003610	0	0
TRPV6	55503	broad.mit.edu	37	7	142569731	142569731	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:142569731C>T	uc003wbx.1	-	15	2123	c.1907G>A	c.(1906-1908)AGG>AAG	p.R636K	TRPV6_uc003wbw.1_Missense_Mutation_p.R422K|TRPV6_uc010lou.1_Missense_Mutation_p.R507K	NM_018646	NP_061116	Q9H1D0	TRPV6_HUMAN	transient receptor potential cation channel,	636	Cytoplasmic (Potential).				regulation of calcium ion-dependent exocytosis	integral to plasma membrane	calcium channel activity|calmodulin binding			ovary(2)	2	Melanoma(164;0.059)					GAGATCTTGCCTGTCTTCCAC	0.547000													92	40					0	0	0.003610	0	0
OR2A5	393046	broad.mit.edu	37	7	143747860	143747860	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:143747860G>A	uc011ktw.1	+	1	366	c.366G>A	c.(364-366)CGG>CGA	p.R122R		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CCTACGATCGGTACATGGCTA	0.473000													184	92					0	0	0.003610	0	0
ZNF425	155054	broad.mit.edu	37	7	148801551	148801551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:148801551G>A	uc003wfj.2	-	4	1485	c.1412C>T	c.(1411-1413)CCC>CTC	p.P471L		NM_001001661	NP_001001661	Q6IV72	ZN425_HUMAN	zinc finger protein 425	471	C2H2-type 10.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|zinc ion binding			breast(2)|ovary(1)	3	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00463)			CTCGGCGCAGGGGAAGGGCTT	0.667000													18	81					0	0	0.006122	0	0
NOS3	4846	broad.mit.edu	37	7	150697640	150697640	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:150697640G>A	uc003wif.2	+	10	1482	c.1186G>A	c.(1186-1188)GAC>AAC	p.D396N	NOS3_uc011kuy.1_Missense_Mutation_p.D190N|NOS3_uc011kuz.1_Missense_Mutation_p.D396N|NOS3_uc011kva.1_Missense_Mutation_p.D396N|NOS3_uc011kvb.1_Missense_Mutation_p.D396N	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	396	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	CCTGTGGAAAGACAAGGCAGC	0.602000													8	58					0	0	0.004482	0	0
CSMD1	64478	broad.mit.edu	37	8	3046514	3046514	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:3046514G>A	uc011kwk.1	-	35	5811	c.5421C>T	c.(5419-5421)TTC>TTT	p.F1807F	CSMD1_uc011kwj.1_Silent_p.F1199F|CSMD1_uc003wqe.2_Silent_p.F963F|CSMD1_uc010lrg.2_5'Flank	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	1807	Extracellular (Potential).|CUB 11.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		TTCGTTGAGTGAAATTGCCAC	0.458000													19	15					0	0	0.001882	0	0
Unknown	0	broad.mit.edu	37	8	30209743	30209743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:30209743G>A	uc003xhz.2	+	1	225	c.220G>A	c.(220-222)GAC>AAC	p.D74N						SubName: Full=Class IVb beta tubulin;																		TGGGACCATGGACTCTGTTCG	0.522000													31	85					0	0	0.003755	0	0
TEX15	56154	broad.mit.edu	37	8	30704622	30704622	+	Silent	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:30704622A>G	uc003xil.2	-	1	1912	c.1912T>C	c.(1912-1914)TTA>CTA	p.L638L		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	638										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TGTTTTACTAACAAACCAAAA	0.323000													9	36					0	0	0.000443	0	0
CPA6	57094	broad.mit.edu	37	8	68536417	68536417	+	Silent	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:68536417T>C	uc003xxq.3	-	2	442	c.186A>G	c.(184-186)CAA>CAG	p.Q62Q	CPA6_uc003xxr.3_5'UTR|CPA6_uc003xxs.2_Silent_p.Q62Q	NM_020361	NP_065094	Q8N4T0	CBPA6_HUMAN	carboxypeptidase A6 isoform 1 precursor	62					proteolysis	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)	2			Epithelial(68;0.04)|OV - Ovarian serous cystadenocarcinoma(28;0.0593)|all cancers(69;0.136)			TTACCTTAAGTTGATAGGATA	0.323000													13	31					0	0	0.003163	0	0
CCNE2	9134	broad.mit.edu	37	8	95900157	95900157	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:95900157C>T	uc003yhc.2	-	7	707	c.598G>A	c.(598-600)GAG>AAG	p.E200K	CCNE2_uc003yhd.2_Missense_Mutation_p.E200K	NM_057749	NP_477097	O96020	CCNE2_HUMAN	cyclin E2	200					cell cycle checkpoint|cell division|G1/S transition of mitotic cell cycle|regulation of cyclin-dependent protein kinase activity	cytosol|nucleoplasm	protein kinase binding				0	Breast(36;8.75e-07)					GAACTTACCTCAAGTTTGGAA	0.254000													237	217					0	0	0.003610	0	0
C8orf47	203111	broad.mit.edu	37	8	99101579	99101579	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:99101579G>A	uc003yih.1	+	2	482	c.334G>A	c.(334-336)GAA>AAA	p.E112K		NM_173549	NP_775820	Q6P6B1	CH047_HUMAN	hypothetical protein LOC203111	112											0	Breast(36;2.31e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.214)			GGGACTGGAGGAATCTGGGCC	0.582000													13	33					0	0	0.001855	0	0
LRP12	29967	broad.mit.edu	37	8	105503038	105503038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:105503038G>A	uc003yma.2	-	7	2538	c.2443C>T	c.(2443-2445)CCT>TCT	p.P815S	LRP12_uc003ymb.2_Missense_Mutation_p.P796S|LRP12_uc003ylz.2_Missense_Mutation_p.P221S	NM_013437	NP_038465	Q9Y561	LRP12_HUMAN	low density lipoprotein-related protein 12	815	Cytoplasmic (Potential).				endocytosis|regulation of growth	coated pit|integral to plasma membrane	low-density lipoprotein receptor activity|protein binding				0			OV - Ovarian serous cystadenocarcinoma(57;1.21e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CTTACTCCAGGATTTGTTGCA	0.458000													7	37					0	0	0.003080	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110397839	110397839	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:110397839G>A	uc003yne.2	+	6	653	c.549G>A	c.(547-549)GGG>GGA	p.G183G		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	183	Extracellular (Potential).|IPT/TIG 2.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GCTCAAATGGGAAAAATGTTA	0.299000										HNSCC(38;0.096)			16	22					0	0	0.006122	0	0
SYBU	55638	broad.mit.edu	37	8	110655054	110655054	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:110655054G>A	uc003ynj.3	-	2	295	c.132C>T	c.(130-132)GCC>GCT	p.A44A	SYBU_uc003yni.3_Silent_p.A41A|SYBU_uc003ynk.3_Intron|SYBU_uc010mco.2_Silent_p.A43A|SYBU_uc003ynl.3_Silent_p.A43A|SYBU_uc010mcp.2_Silent_p.A44A|SYBU_uc010mcq.2_Silent_p.A44A|SYBU_uc003yno.3_Intron|SYBU_uc010mcr.2_Silent_p.A44A|SYBU_uc003ynm.3_Silent_p.A43A|SYBU_uc003ynn.3_Silent_p.A43A|SYBU_uc010mcs.2_Intron|SYBU_uc010mct.2_Silent_p.A44A|SYBU_uc010mcu.2_Silent_p.A43A|SYBU_uc003ynp.3_Intron|SYBU_uc010mcv.2_Silent_p.A44A|uc003ynq.1_5'Flank	NM_001099754	NP_001093224	Q9NX95	SYBU_HUMAN	Golgi-localized syntaphilin-related protein	44	Sufficient for interaction with KIF5B.|Ser-rich.					cytoplasmic membrane-bounded vesicle|cytoskeleton|Golgi membrane|integral to membrane				ovary(1)	1						GAGACTCAGAGGCTGGGGACA	0.547000													17	64					0	0	0.000958	0	0
KCNV1	27012	broad.mit.edu	37	8	110980573	110980573	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:110980573C>T	uc003ynr.3	-	3	1589	c.1247G>A	c.(1246-1248)GGA>GAA	p.G416E	KCNV1_uc010mcw.2_Missense_Mutation_p.G416E	NM_014379	NP_055194	Q6PIU1	KCNV1_HUMAN	potassium channel, subfamily V, member 1	416	Helical; Name=Segment S6; (Potential).					voltage-gated potassium channel complex	ion channel inhibitor activity|potassium channel regulator activity|voltage-gated potassium channel activity			lung(1)|kidney(1)	2	all_neural(195;0.219)		OV - Ovarian serous cystadenocarcinoma(57;5.35e-13)			GACAAGAATTCCCGATAATAT	0.473000													23	92					0	0	0.003330	0	0
KCNK9	51305	broad.mit.edu	37	8	140631332	140631332	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:140631332G>C	uc003yvf.1	-	2	358	c.294C>G	c.(292-294)CAC>CAG	p.H98Q	KCNK9_uc003yvg.1_Missense_Mutation_p.H98Q|KCNK9_uc003yve.1_RNA	NM_016601	NP_057685	Q9NPC2	KCNK9_HUMAN	potassium channel, subfamily K, member 9	98						integral to membrane|membrane fraction	potassium channel activity|voltage-gated ion channel activity			ovary(2)|lung(1)	3	all_cancers(97;3.94e-14)|all_epithelial(106;4.81e-13)|Lung NSC(106;8.18e-05)|all_lung(105;0.00015)|Ovarian(258;0.00235)|Acute lymphoblastic leukemia(118;0.155)	Ovarian(118;0.134)	BRCA - Breast invasive adenocarcinoma(115;0.0855)			CAGGTGCAGCGTGCCCATAAC	0.612000													6	25					0	0	0.001984	0	0
EPPK1	83481	broad.mit.edu	37	8	144940456	144940456	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:144940456G>A	uc003zaa.1	-	2	14989	c.14976C>T	c.(14974-14976)TTC>TTT	p.F4992F		NM_031308	NP_112598	P58107	EPIPL_HUMAN	epiplakin 1	4992	Plectin 63.					cytoplasm|cytoskeleton	protein binding|structural molecule activity			pancreas(1)|skin(1)	2	all_cancers(97;1.42e-10)|all_epithelial(106;1.99e-09)|Lung NSC(106;0.000126)|all_lung(105;0.000354)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;2.88e-40)|all cancers(56;1.82e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			GCATGGCCTGGAAGAGGGAGA	0.701000													8	244					0	0	0.004482	0	0
FOXH1	8928	broad.mit.edu	37	8	145699638	145699638	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr8:145699638A>T	uc003zdc.2	-	3	1660	c.1081T>A	c.(1081-1083)TCC>ACC	p.S361T		NM_003923	NP_003914	O75593	FOXH1_HUMAN	forkhead box H1	361					axial mesoderm development|blood vessel development|cell migration involved in gastrulation|embryonic heart tube anterior/posterior pattern formation|floor plate formation|heart looping|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|specification of organ position|transforming growth factor beta receptor signaling pathway	activin responsive factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|protein domain specific binding|R-SMAD binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription factor binding				0	all_cancers(97;4.61e-11)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;1.08e-41)|Epithelial(56;8.67e-41)|all cancers(56;1.76e-35)|BRCA - Breast invasive adenocarcinoma(115;0.035)|Colorectal(110;0.055)			CTGCACCAGGAGAGCAGCCAG	0.662000													9	17					0	0	0.000443	0	0
FOXD4	2298	broad.mit.edu	37	9	117497	117498	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:117497_117498CC>TT	uc003zfz.2	-	1	920_921	c.622_623GG>AA	c.(622-624)GGA>AAA	p.G208K		NM_207305	NP_997188	Q12950	FOXD4_HUMAN	forkhead box D4	208	Pro-rich.				axon extension involved in axon guidance|cartilage development|dichotomous subdivision of terminal units involved in ureteric bud branching|embryo development|enteric nervous system development|iridophore differentiation|lateral line nerve glial cell development|melanocyte differentiation|neural crest cell migration|pattern specification process|peripheral nervous system development|positive regulation of BMP signaling pathway|positive regulation of kidney development|positive regulation of transcription from RNA polymerase II promoter|regulation of sequence-specific DNA binding transcription factor activity|sympathetic nervous system development	transcription factor complex	DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			skin(1)	1	all_lung(41;0.218)	all_cancers(5;0.0395)|Acute lymphoblastic leukemia(5;1.91e-07)|all_hematologic(5;1.95e-06)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		CAGGTGGGCTCCCGGGGTCGGT	0.698000													52	40					0	0	0.004672	0	0
DMRT2	10655	broad.mit.edu	37	9	1056230	1056230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:1056230C>T	uc003zha.2	+	4	843	c.643C>T	c.(643-645)CCA>TCA	p.P215S	DMRT2_uc003zgx.3_5'UTR|DMRT2_uc010mgz.2_5'UTR|DMRT2_uc003zgy.3_Missense_Mutation_p.P59S|DMRT2_uc003zhb.3_3'UTR|DMRT2_uc011llt.1_3'UTR|DMRT2_uc011llu.1_3'UTR|DMRT2_uc011llv.1_Missense_Mutation_p.P215S	NM_181872	NP_870987	Q9Y5R5	DMRT2_HUMAN	doublesex and mab-3 related transcription factor	215					male gonad development|sex determination	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0		all_lung(10;1.49e-09)|Lung NSC(10;1.86e-09)		Lung(218;0.0195)|GBM - Glioblastoma multiforme(50;0.0388)		TCGCCCCATTCCAGCGGAGAC	0.448000													65	21					0	0	0.003610	0	0
PLAA	9373	broad.mit.edu	37	9	26925929	26925929	+	Silent	SNP	G	A	A	rs34105613		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:26925929G>A	uc003zqd.2	-	6	1188	c.763C>T	c.(763-765)CTG>TTG	p.L255L	PLAA_uc003zqe.2_Silent_p.L255L	NM_001031689	NP_001026859	Q9Y263	PLAP_HUMAN	phospholipase A2-activating protein	255	WD 6.				phospholipid metabolic process|signal transduction		phospholipase A2 activator activity				0		all_neural(3;3.53e-10)|Glioma(3;2.71e-09)		Lung(218;1.32e-05)|LUSC - Lung squamous cell carcinoma(38;0.00011)		CAGATTCTCAGAGATCTGTCC	0.383000													21	7					0	0	0.002780	0	0
TAF1L	138474	broad.mit.edu	37	9	32630827	32630827	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:32630827C>A	uc003zrg.1	-	1	4841	c.4751G>T	c.(4750-4752)CGG>CTG	p.R1584L	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1584	Bromo 2.				male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AAAACTCTCCCGACTCTGATA	0.378000													19	32					4.96729e-08	2.43892e-07	0.001216	1	0
PIGO	84720	broad.mit.edu	37	9	35091877	35091877	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:35091877C>A	uc003zwd.2	-	7	2403	c.2007G>T	c.(2005-2007)TGG>TGT	p.W669C	PIGO_uc003zwc.1_3'UTR|PIGO_uc003zwe.2_Intron|PIGO_uc003zwf.2_Intron|PIGO_uc003zwg.1_Missense_Mutation_p.W232C	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	669	Helical; (Potential).				C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			AAGCTCCATACCACAAATTCT	0.587000													23	5					0.000295444	0.00144377	0.002299	1	0
ZCCHC7	84186	broad.mit.edu	37	9	37356868	37356868	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:37356868A>G	uc003zzq.2	+	9	1408	c.1235A>G	c.(1234-1236)AAG>AGG	p.K412R	ZCCHC7_uc011lqh.1_Missense_Mutation_p.K122R|ZCCHC7_uc011lqi.1_Missense_Mutation_p.K411R|ZCCHC7_uc010mlt.2_Missense_Mutation_p.K411R	NM_032226	NP_115602	Q8N3Z6	ZCHC7_HUMAN	zinc finger, CCHC domain containing 7	412							nucleic acid binding|zinc ion binding			ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(29;0.0137)		GAGCCATCCAAGCTACCTTAT	0.403000													13	4					0	0	0.001855	0	0
GDA	9615	broad.mit.edu	37	9	74828861	74828861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:74828861C>T	uc004aiq.2	+	5	715	c.532C>T	c.(532-534)CCA>TCA	p.P178S	GDA_uc011lse.1_Missense_Mutation_p.P104S|GDA_uc011lsf.1_Missense_Mutation_p.P104S|GDA_uc004air.2_Missense_Mutation_p.P178S|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.P136S|GDA_uc004ait.1_Missense_Mutation_p.P104S	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	178					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		TGACACTTTTCCAGAATACAA	0.398000													24	10					0	0	0.001786	0	0
OR13F1	138805	broad.mit.edu	37	9	107266729	107266729	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:107266729C>T	uc011lvm.1	+	1	186	c.186C>T	c.(184-186)TTC>TTT	p.F62F		NM_001004485	NP_001004485	Q8NGS4	O13F1_HUMAN	olfactory receptor, family 13, subfamily F,	62	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|ovary(1)|skin(1)	3						TGTACCTCTTCCTCAGCAATC	0.478000													41	26					0	0	0.001951	0	0
TLR4	7099	broad.mit.edu	37	9	120474949	120474949	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:120474949C>T	uc004bjz.2	+	3	834	c.543C>T	c.(541-543)GAC>GAT	p.D181D	TLR4_uc004bka.2_Silent_p.D141D|TLR4_uc004bkb.2_5'UTR	NM_138554	NP_612564	O00206	TLR4_HUMAN	toll-like receptor 4 precursor	181	Extracellular (Potential).|LRR 6.				activation of MAPK activity|cellular response to mechanical stimulus|detection of fungus|detection of lipopolysaccharide|I-kappaB phosphorylation|innate immune response|intestinal epithelial structure maintenance|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of ERK1 and ERK2 cascade|negative regulation of interferon-gamma production|negative regulation of interleukin-17 production|negative regulation of interleukin-23 production|negative regulation of interleukin-6 production|negative regulation of osteoclast differentiation|negative regulation of tumor necrosis factor production|positive regulation of chemokine production|positive regulation of interferon-alpha production|positive regulation of interferon-beta production|positive regulation of interferon-gamma production|positive regulation of interleukin-1 production|positive regulation of interleukin-10 production|positive regulation of interleukin-12 biosynthetic process|positive regulation of interleukin-12 production|positive regulation of interleukin-6 production|positive regulation of interleukin-8 biosynthetic process|positive regulation of interleukin-8 production|positive regulation of NF-kappaB import into nucleus|positive regulation of NF-kappaB transcription factor activity|positive regulation of nitric-oxide synthase biosynthetic process|positive regulation of platelet activation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of tumor necrosis factor biosynthetic process|positive regulation of tumor necrosis factor production|T-helper 1 type immune response|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 4 signaling pathway	external side of plasma membrane|integral to plasma membrane|lipopolysaccharide receptor complex|perinuclear region of cytoplasm	lipopolysaccharide receptor activity|transmembrane receptor activity			lung(10)|ovary(4)|breast(1)|skin(1)	16						AGCACTTGGACCTTTCCAGCA	0.383000													14	6					0	0	0.002450	0	0
OR1L8	138881	broad.mit.edu	37	9	125330655	125330655	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:125330655G>A	uc004bmp.1	-	1	102	c.102C>T	c.(100-102)ATC>ATT	p.I34I		NM_001004454	NP_001004454	Q8NGR8	OR1L8_HUMAN	olfactory receptor, family 1, subfamily L,	34	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3						CCAGGTACACGATGAGGAAGA	0.498000													15	10					0	0	0.002450	0	0
PTRH1	138428	broad.mit.edu	37	9	130476437	130476437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:130476437G>A	uc004bro.2	-	5	605	c.587C>T	c.(586-588)ACC>ATC	p.T196I	PTRH1_uc004brm.2_Intron|PTRH1_uc010mxm.2_Missense_Mutation_p.P194S|PTRH1_uc011mah.1_Missense_Mutation_p.T209I|TTC16_uc004brq.1_5'Flank|TTC16_uc011mai.1_5'Flank|TTC16_uc004brr.1_5'Flank	NM_001002913	NP_001002913	Q86Y79	PTH_HUMAN	peptidyl-tRNA hydrolase 1 homolog	196					translation		aminoacyl-tRNA hydrolase activity|protein binding				0						GATCAGGTCGGTGGCTCGATC	0.662000													8	2					0	0	0.004482	0	0
SLC27A4	10999	broad.mit.edu	37	9	131115808	131115808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr9:131115808C>T	uc004but.2	+	9	1596	c.1312C>T	c.(1312-1314)CCC>TCC	p.P438S	SLC27A4_uc004buu.2_Intron	NM_005094	NP_005085	Q6P1M0	S27A4_HUMAN	solute carrier family 27 (fatty acid	438					long-chain fatty acid transport|transmembrane transport	integral to membrane	fatty acid transporter activity|nucleotide binding|protein binding				0						CGTCTGCATTCCCTGCCAGCC	0.627000													38	9					0	0	0.001706	0	0
ZBED1	9189	broad.mit.edu	37	X	2406968	2406968	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:2406968A>G	uc004cqg.2	-	2	1994	c.1793T>C	c.(1792-1794)TTC>TCC	p.F598S	DHRSX_uc004cqf.3_Intron|ZBED1_uc004cqh.1_Missense_Mutation_p.F598S	NM_004729	NP_004720	O96006	ZBED1_HUMAN	zinc finger, BED-type containing 1	598						nuclear chromosome	DNA binding|metal ion binding|protein dimerization activity|transposase activity				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				CAGCAGGGGGAAGAGGGCCAG	0.652000													66	115					0	0	0.003610	0	0
MXRA5	25878	broad.mit.edu	37	X	3227976	3227976	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:3227976C>T	uc004crg.3	-	7	8425	c.8268G>A	c.(8266-8268)ATG>ATA	p.M2756I		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	2756	Ig-like C2-type 12.					extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				TCCCCATAGCCATGCAGTTCA	0.567000													51	78					0	0	0.003610	0	0
MXRA5	25878	broad.mit.edu	37	X	3238193	3238193	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:3238193T>C	uc004crg.3	-	5	5690	c.5533A>G	c.(5533-5535)AAA>GAA	p.K1845E		NM_015419	NP_056234	Q9NR99	MXRA5_HUMAN	adlican precursor	1845						extracellular region				ovary(5)|lung(1)|central_nervous_system(1)|skin(1)	8		all_lung(23;0.00031)|Lung NSC(23;0.000946)				GACCAGAATTTGGATGCAGGA	0.517000													44	43					0	0	0.003610	0	0
FAM9A	171482	broad.mit.edu	37	X	8768137	8768137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:8768137C>T	uc004csg.2	-	2	187	c.76G>A	c.(76-78)GGG>AGG	p.G26R		NM_174951	NP_777611	Q8IZU1	FAM9A_HUMAN	family with sequence similarity 9, member A	26						nucleolus					0		Hepatocellular(5;0.219)				TTCGTGGCCCCCTGGGCGGCC	0.632000													18	31					0	0	0.001882	0	0
DCAF8L2	347442	broad.mit.edu	37	X	27766044	27766044	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:27766044C>T	uc011mjy.1	+	1	1119	c.1032C>T	c.(1030-1032)TTC>TTT	p.F344F		NM_001136533	NP_001130005			DDB1 and CUL4 associated factor 8-like 2											central_nervous_system(1)|pancreas(1)	2						CTGTTGTCTTCACCATTGACC	0.483000													21	30					0	0	0.005443	0	0
TFE3	7030	broad.mit.edu	37	X	48896763	48896763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:48896763C>T	uc004dmb.3	-	3	641	c.403G>A	c.(403-405)GAA>AAA	p.E135K	TFE3_uc004dmc.3_Missense_Mutation_p.E30K|TFE3_uc004dme.1_RNA	NM_006521	NP_006512	P19532	TFE3_HUMAN	transcription factor E3	135					humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding		ASPSCR1/TFE3(161)|PRCC/TFE3(25)|SFPQ/TFE3(6)|NONO/TFE3(2)|CLTC/TFE3(2)	soft_tissue(120)|kidney(76)|central_nervous_system(1)	197						GCGGCCTGTTCCCGACGCTCA	0.662000			T	SFPQ|ASPSCR1|PRCC|NONO|CLTC	papillary renal|alveolar soft part sarcoma|renal								6	10					0	0	0.001984	0	0
TFE3	7030	broad.mit.edu	37	X	48896774	48896774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:48896774C>T	uc004dmb.3	-	3	630	c.392G>A	c.(391-393)CGT>CAT	p.R131H	TFE3_uc004dmc.3_Missense_Mutation_p.R26H|TFE3_uc004dme.1_RNA	NM_006521	NP_006512	P19532	TFE3_HUMAN	transcription factor E3	131					humoral immune response|positive regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding		ASPSCR1/TFE3(161)|PRCC/TFE3(25)|SFPQ/TFE3(6)|NONO/TFE3(2)|CLTC/TFE3(2)	soft_tissue(120)|kidney(76)|central_nervous_system(1)	197						CCGACGCTCACGCCTCTCCTG	0.667000			T	SFPQ|ASPSCR1|PRCC|NONO|CLTC	papillary renal|alveolar soft part sarcoma|renal								6	8					0	0	0.001984	0	0
Unknown	0	broad.mit.edu	37	X	51150785	51150785	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:51150785C>T	uc004dpj.2	+	1	1019	c.917C>T	c.(916-918)TCT>TTT	p.S306F		NM_203407	NP_981952			hypothetical protein LOC340602																		GGCCGCGATTCTGCGCCAGGC	0.731000													11	10					0	0	0.000978	0	0
RLIM	51132	broad.mit.edu	37	X	73812706	73812706	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:73812706C>T	uc004ebu.2	-	5	734	c.444G>A	c.(442-444)GGG>GGA	p.G148G	RLIM_uc004ebw.2_Silent_p.G148G	NM_183353	NP_899196	Q9NVW2	RNF12_HUMAN	ring finger protein, LIM domain interacting	148					random inactivation of X chromosome|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	cytoplasm|transcriptional repressor complex	transcription corepressor activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(2)	2						AATTTTGGCTCCCATTATTAC	0.418000													61	91					0	0	0.003610	0	0
KIAA2022	340533	broad.mit.edu	37	X	73963906	73963906	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:73963906C>T	uc004eby.2	-	3	1103	c.486G>A	c.(484-486)GGG>GGA	p.G162G		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	162					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						TCAGACTGATCCCTGGCTCAG	0.448000													7	25					0	0	0.001984	0	0
BRWD3	254065	broad.mit.edu	37	X	79932655	79932655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:79932655G>A	uc004edt.2	-	41	5125	c.4862C>T	c.(4861-4863)TCT>TTT	p.S1621F	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.S1217F|BRWD3_uc004edp.2_Missense_Mutation_p.S1450F|BRWD3_uc004edq.2_Missense_Mutation_p.S1217F|BRWD3_uc010nmj.1_Missense_Mutation_p.S1217F|BRWD3_uc004edr.2_Missense_Mutation_p.S1291F|BRWD3_uc004eds.2_Missense_Mutation_p.S1217F|BRWD3_uc004edu.2_Missense_Mutation_p.S1291F|BRWD3_uc004edv.2_Missense_Mutation_p.S1217F|BRWD3_uc004edw.2_Missense_Mutation_p.S1217F|BRWD3_uc004edx.2_Missense_Mutation_p.S1217F|BRWD3_uc004edy.2_Missense_Mutation_p.S1217F|BRWD3_uc004edz.2_Missense_Mutation_p.S1291F|BRWD3_uc004eea.2_Missense_Mutation_p.S1291F|BRWD3_uc004eeb.2_Missense_Mutation_p.S1217F|uc004edn.1_5'Flank	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	1621										ovary(4)	4						GTCAGAGTCAGAACCACAGGT	0.328000													11	14					0	0	0.001855	0	0
BRWD3	254065	broad.mit.edu	37	X	79960305	79960305	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:79960305C>T	uc004edt.2	-	23	2856	c.2593G>A	c.(2593-2595)GGA>AGA	p.G865R	BRWD3_uc010nmi.1_RNA|BRWD3_uc004edo.2_Missense_Mutation_p.G461R|BRWD3_uc004edp.2_Missense_Mutation_p.G694R|BRWD3_uc004edq.2_Missense_Mutation_p.G461R|BRWD3_uc010nmj.1_Missense_Mutation_p.G461R|BRWD3_uc004edr.2_Missense_Mutation_p.G535R|BRWD3_uc004eds.2_Missense_Mutation_p.G461R|BRWD3_uc004edu.2_Missense_Mutation_p.G535R|BRWD3_uc004edv.2_Missense_Mutation_p.G461R|BRWD3_uc004edw.2_Missense_Mutation_p.G461R|BRWD3_uc004edx.2_Missense_Mutation_p.G461R|BRWD3_uc004edy.2_Missense_Mutation_p.G461R|BRWD3_uc004edz.2_Missense_Mutation_p.G535R|BRWD3_uc004eea.2_Missense_Mutation_p.G535R|BRWD3_uc004eeb.2_Missense_Mutation_p.G461R	NM_153252	NP_694984	Q6RI45	BRWD3_HUMAN	bromodomain and WD repeat domain containing 3	865										ovary(4)	4						AAATTTATTCCAGCATCTGCT	0.348000													30	37					0	0	0.002096	0	0
PCDH19	57526	broad.mit.edu	37	X	99551284	99551284	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:99551284G>A	uc010nmz.2	-	6	5114	c.3438C>T	c.(3436-3438)ATC>ATT	p.I1146I	PCDH19_uc004efw.3_Silent_p.I1098I|PCDH19_uc004efx.3_Silent_p.I1099I	NM_020766	NP_001098713	Q8TAB3	PCD19_HUMAN	protocadherin 19 isoform b	1146	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	7						TTTAGAGAACGATATCCTTCA	0.483000													44	84					0	0	0.003214	0	0
DRP2	1821	broad.mit.edu	37	X	100496794	100496794	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:100496794C>T	uc004egz.2	+	7	1066	c.697C>T	c.(697-699)CTC>TTC	p.L233F	DRP2_uc011mrh.1_Missense_Mutation_p.L155F	NM_001939	NP_001930	Q13474	DRP2_HUMAN	dystrophin related protein 2	233	Spectrin 2.				central nervous system development	cytoplasm|cytoskeleton	zinc ion binding			ovary(2)	2						TCTGGAGCAGCTCTTGGAGAT	0.562000													10	19					0	0	0.000673	0	0
ARMCX2	9823	broad.mit.edu	37	X	100911566	100911566	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:100911566C>T	uc004eid.2	-	3	1364	c.1009G>A	c.(1009-1011)GAT>AAT	p.D337N	ARMCX2_uc004eie.3_Missense_Mutation_p.D337N|ARMCX2_uc004eif.3_Missense_Mutation_p.D337N|ARMCX2_uc004eig.3_Missense_Mutation_p.D337N|ARMCX2_uc010nnt.2_Missense_Mutation_p.D337N	NM_177949	NP_808818	Q7L311	ARMX2_HUMAN	ALEX2 protein	337						integral to membrane	binding			ovary(6)	6						TCCTCAGAATCAGGGACCTCT	0.607000													36	50					0	0	0.004289	0	0
GPRASP1	9737	broad.mit.edu	37	X	101912113	101912113	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:101912113T>C	uc004ejj.3	+	5	4073	c.3272T>C	c.(3271-3273)CTT>CCT	p.L1091P	GPRASP1_uc004eji.3_Missense_Mutation_p.L1091P|GPRASP1_uc010nod.2_Missense_Mutation_p.L1091P	NM_014710	NP_055525	Q5JY77	GASP1_HUMAN	G protein-coupled receptor associated sorting	1091	OPRD1-binding.					cytoplasm	protein binding			ovary(1)|lung(1)	2						AACATGGTACTTAGCCCAGAA	0.483000													110	181					0	0	0.003610	0	0
TDGF3	6998	broad.mit.edu	37	X	109764262	109764262	+	RNA	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:109764262C>T	uc004eos.1	+	1		c.723C>T				NR_002718				Human (clone CR-3) teratocarcinoma-derived growth factor 3 (TDGF3) mRNA, complete cds.												0						TTGCCATTTTCGCTTTAGGAG	0.448000													15	18					0	0	0.004007	0	0
PLS3	5358	broad.mit.edu	37	X	114880811	114880811	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:114880811G>A	uc004eqd.2	+	13	1857	c.1467G>A	c.(1465-1467)GGG>GGA	p.G489G	PLS3_uc010nqg.2_Silent_p.G271G|PLS3_uc011mtf.1_Silent_p.G476G|PLS3_uc004eqe.2_Silent_p.G489G|PLS3_uc011mtg.1_Silent_p.G462G|PLS3_uc011mth.1_Silent_p.G444G|PLS3_uc011mti.1_Silent_p.G165G|PLS3_uc011mtj.1_Silent_p.G83G|PLS3_uc011mtk.1_Silent_p.G150G|PLS3_uc011mtl.1_RNA	NM_005032	NP_005023	P13797	PLST_HUMAN	plastin 3	489	Actin-binding 2.|CH 3.					cytoplasm	actin binding|calcium ion binding			lung(1)|breast(1)	2						TGAATGATGGGAACCAAACCC	0.423000													39	56					0	0	0.001485	0	0
AGTR2	186	broad.mit.edu	37	X	115303711	115303711	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:115303711C>T	uc004eqh.3	+	3	385	c.178C>T	c.(178-180)CTG>TTG	p.L60L		NM_000686	NP_000677	P50052	AGTR2_HUMAN	angiotensin II receptor, type 2	60	Helical; Name=1; (Potential).				behavior|blood vessel remodeling|brain development|G-protein signaling, coupled to cGMP nucleotide second messenger|intracellular protein kinase cascade|negative regulation of blood vessel endothelial cell migration|negative regulation of cell growth|negative regulation of heart rate|negative regulation of nerve growth factor receptor signaling pathway|nitric oxide mediated signal transduction|positive regulation of apoptosis|positive regulation of nitric-oxide synthase activity|positive regulation of phosphoprotein phosphatase activity|positive regulation of vasodilation|regulation of systemic arterial blood pressure by circulatory renin-angiotensin		angiotensin type II receptor activity|receptor antagonist activity			ovary(2)|lung(1)	3						AATTGGATTTCTGGTCAATAT	0.363000													14	23					0	0	0.001855	0	0
KLHL13	90293	broad.mit.edu	37	X	117053493	117053493	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:117053493G>A	uc004eql.2	-	4	623	c.561C>T	c.(559-561)CTC>CTT	p.L187L	KLHL13_uc004eqk.2_Silent_p.L136L|KLHL13_uc011mtn.1_Silent_p.L27L|KLHL13_uc011mto.1_Silent_p.L181L|KLHL13_uc011mtp.1_Silent_p.L189L|KLHL13_uc004eqm.2_Silent_p.L136L|KLHL13_uc011mtq.1_Silent_p.L171L	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	187					cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						CCCCAGATATGAGAAACACTT	0.413000													57	80					0	0	0.003610	0	0
PGRMC1	10857	broad.mit.edu	37	X	118370369	118370369	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:118370369G>A	uc004erb.2	+	1	159	c.43G>A	c.(43-45)GAT>AAT	p.D15N	PGRMC1_uc011mts.1_Missense_Mutation_p.D15N	NM_006667	NP_006658	O00264	PGRC1_HUMAN	progesterone receptor membrane component 1	15	Lumenal (Potential).					cell surface|endoplasmic reticulum membrane|integral to membrane|microsome|nucleolus	heme binding|protein binding|receptor activity|steroid binding				0						CGACCCAAGCGATCTGGAGAG	0.617000													27	36					0	0	0.002096	0	0
ACTRT1	139741	broad.mit.edu	37	X	127185417	127185417	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:127185417G>A	uc004eum.2	-	1	966	c.769C>T	c.(769-771)CAA>TAA	p.Q257*		NM_138289	NP_612146	Q8TDG2	ACTT1_HUMAN	actin-related protein T1	257						cytoplasm|cytoskeleton				ovary(2)|central_nervous_system(2)|skin(1)	5						TCGGGCACTTGGTACAGCTCA	0.542000													28	33					0	0	0.001271	0	0
ZNF75D	7626	broad.mit.edu	37	X	134421366	134421366	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:134421366G>A	uc004eyp.2	-	7	3891	c.1236C>T	c.(1234-1236)TTC>TTT	p.F412F	ZNF75D_uc004eym.2_Intron|ZNF75D_uc004eyn.2_Silent_p.F191F|ZNF75D_uc004eyo.2_Silent_p.F317F	NM_007131	NP_009062	P51815	ZN75D_HUMAN	zinc finger protein 75	412	C2H2-type 2.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GATGGGTCATGAAGTGCTTAT	0.378000													36	60					0	0	0.002222	0	0
SLC9A6	10479	broad.mit.edu	37	X	135106572	135106572	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:135106572C>T	uc004ezj.2	+	12	1526	c.1450C>T	c.(1450-1452)CTG>TTG	p.L484L	SLC9A6_uc004ezk.2_Silent_p.L516L	NM_006359	NP_006350	Q92581	SL9A6_HUMAN	solute carrier family 9 (sodium/hydrogen	484	Helical; (Potential).				regulation of pH	early endosome membrane|endoplasmic reticulum membrane|integral to membrane|microsome|plasma membrane|recycling endosome membrane	sodium:hydrogen antiporter activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CACCACGCTTCTGATTGTGTT	0.468000													24	65					0	0	0.004656	0	0
MAP7D3	79649	broad.mit.edu	37	X	135313883	135313883	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:135313883C>G	uc004ezt.2	-	8	1324	c.1233G>C	c.(1231-1233)GAG>GAC	p.E411D	MAP7D3_uc004ezs.2_Missense_Mutation_p.E375D|MAP7D3_uc011mwc.1_Missense_Mutation_p.E393D|MAP7D3_uc010nsa.1_Missense_Mutation_p.E369D	NM_024597	NP_078873	Q8IWC1	MA7D3_HUMAN	MAP7 domain containing 3	411						cytoplasm|spindle				ovary(2)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;0.000127)					CCAGGCTCCCCTCTGGGGCTG	0.627000													23	92					0	0	0.003954	0	0
GPR112	139378	broad.mit.edu	37	X	135428847	135428847	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:135428847C>T	uc004ezu.1	+	6	3273	c.2982C>T	c.(2980-2982)ATC>ATT	p.I994I	GPR112_uc010nsb.1_Silent_p.I789I|GPR112_uc010nsc.1_Silent_p.I761I	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	994	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					CTGATGGTATCTTACCTCCAC	0.502000													11	19					0	0	0.000673	0	0
MCF2	4168	broad.mit.edu	37	X	138668615	138668615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:138668615C>T	uc004fau.2	-	23	2848	c.2554G>A	c.(2554-2556)GAA>AAA	p.E852K	MCF2_uc004fav.2_Missense_Mutation_p.E868K|MCF2_uc011mwl.1_Missense_Mutation_p.E829K|MCF2_uc010nsh.1_Intron|MCF2_uc011mwm.1_Intron|MCF2_uc011mwn.1_Intron|MCF2_uc004faw.2_Missense_Mutation_p.E912K|MCF2_uc011mwo.1_Missense_Mutation_p.E928K	NM_005369	NP_005360	P10911	MCF2_HUMAN	MCF.2 cell line derived transforming sequence	852					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					AATTCAGTTTCCTCAGTACTT	0.388000													3	5					0	0	0.000248	0	0
LDOC1	23641	broad.mit.edu	37	X	140270841	140270841	+	Silent	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:140270841G>A	uc004fbj.2	-	1	470	c.366C>T	c.(364-366)CTC>CTT	p.L122L		NM_012317	NP_036449	O95751	LDOC1_HUMAN	leucine zipper, down-regulated in cancer 1	122					negative regulation of cell proliferation	nucleus	protein binding				0	Acute lymphoblastic leukemia(192;7.65e-05)					TCATCTCATCGAGGAAGGCCC	0.507000													33	51					0	0	0.002445	0	0
SLITRK4	139065	broad.mit.edu	37	X	142717103	142717103	+	Silent	SNP	G	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:142717103G>T	uc004fbx.2	-	2	2198	c.1822C>A	c.(1822-1824)CGA>AGA	p.R608R	SLITRK4_uc004fby.2_Silent_p.R608R	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	608	Extracellular (Potential).					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					GGAGGACTTCGAATGGGACCC	0.423000													42	71					1.62957e-23	8.02012e-23	0.001951	1	0
SLITRK4	139065	broad.mit.edu	37	X	142718335	142718335	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:142718335C>T	uc004fbx.2	-	2	966	c.590G>A	c.(589-591)GGG>GAG	p.G197E	SLITRK4_uc004fby.2_Missense_Mutation_p.G197E	NM_173078	NP_775101	Q8IW52	SLIK4_HUMAN	slit and trk like 4 protein precursor	197	Extracellular (Potential).|LRR 6.					integral to membrane				upper_aerodigestive_tract(1)|large_intestine(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					TTCCAGAACCCCGATATAAGG	0.438000													51	68					0	0	0.003610	0	0
GABRA3	2556	broad.mit.edu	37	X	151393274	151393274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:151393274G>A	uc010ntk.1	-	6	835	c.595C>T	c.(595-597)CCC>TCC	p.P199S		NM_000808	NP_000799	P34903	GBRA3_HUMAN	gamma-aminobutyric acid A receptor, alpha 3	199	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity|protein binding			ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)				Alprazolam(DB00404)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ACATCCATGGGAAAATCTTCC	0.353000													66	32					0	0	0.003610	0	0
NSDHL	50814	broad.mit.edu	37	X	152037581	152037581	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:152037581G>A	uc004fgt.1	+	9	1304	c.1043G>A	c.(1042-1044)GGC>GAC	p.G348D	NSDHL_uc004fgs.1_Missense_Mutation_p.G348D	NM_001129765	NP_001123237	Q15738	NSDHL_HUMAN	NAD(P) dependent steroid dehydrogenase-like	348					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|C-3 sterol dehydrogenase (C-4 sterol decarboxylase) activity|sterol-4-alpha-carboxylate 3-dehydrogenase (decarboxylating) activity				0	Acute lymphoblastic leukemia(192;6.56e-05)				NADH(DB00157)	AAGGCCATGGGCTACCAGCCA	0.597000													23	34					0	0	0.002780	0	0
ZNF275	10838	broad.mit.edu	37	X	152612965	152612965	+	Silent	SNP	C	T	T			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:152612965C>T	uc004fhg.1	+	4	999	c.822C>T	c.(820-822)TTC>TTT	p.F274F	ZNF275_uc011mym.1_Silent_p.F274F|ZNF275_uc011myn.1_Silent_p.F211F			A6NFS0	A6NFS0_HUMAN	SubName: Full=cDNA FLJ16723 fis, clone UTERU3004418, highly similar to Zinc finger protein 275; SubName: Full=Putative uncharacterized protein ZNF275;	274						intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GCAAGTCCTTCCGAGGGGTCA	0.652000													19	26					0	0	0.001882	0	0
MST1P2	11209	broad.mit.edu	37	1	16975890	16975891	+	RNA	INS	-	A	A			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:16975890_16975891insA	uc010och.1	+	11		c.1912_1913insA			MST1P2_uc001azl.3_RNA|MST1P2_uc009vox.2_RNA|MST1P2_uc001azm.3_RNA	NR_027504				Homo sapiens cDNA FLJ43241 fis, clone HEART1000010, weakly  similar to Hepatocyte growth factor-like protein precursor.												0						GCCTCTCACGGGCTATGAGGTA	0.584													9	24	---	---	---	---					
FLG	2312	broad.mit.edu	37	1	152282785	152282785	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr1:152282785delC	uc001ezu.1	-	3	4613	c.4577delG	c.(4576-4578)GGAfs	p.G1526fs		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1526	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCAGACCTTCCCTGGGGTGT	0.572									Ichthyosis				312	73	---	---	---	---					
TSKU	25987	broad.mit.edu	37	11	76506673	76506675	+	In_Frame_Del	DEL	CTG	-	-			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr11:76506673_76506675delCTG	uc001oxt.2	+	2	185_187	c.13_15delCTG	c.(13-15)CTGdel	p.L9del		NM_015516	NP_056331	Q8WUA8	TSK_HUMAN	tsukushin precursor	9						extracellular region					0	Ovarian(111;0.112)					GCCGTGGCCCCTGCTGCTGCTGC	0.616													8	53	---	---	---	---					
IL32	9235	broad.mit.edu	37	16	3119304	3119305	+	Frame_Shift_Ins	INS	-	G	G	rs2981599		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr16:3119304_3119305insG	uc002cto.2	+	6	864_865	c.653_654insG	c.(652-654)GACfs	p.D218fs	IL32_uc002ctk.2_Frame_Shift_Ins_p.D115fs|IL32_uc010uwp.1_Frame_Shift_Ins_p.D152fs|IL32_uc010btb.2_Frame_Shift_Ins_p.D162fs|IL32_uc002ctl.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctm.2_Frame_Shift_Ins_p.D172fs|IL32_uc002ctn.2_Frame_Shift_Ins_p.D172fs|IL32_uc002cts.3_Frame_Shift_Ins_p.D172fs|IL32_uc002ctp.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctq.2_Frame_Shift_Ins_p.D218fs|IL32_uc002ctr.2_Frame_Shift_Ins_p.D152fs|IL32_uc002ctt.2_Frame_Shift_Ins_p.D172fs|IL32_uc010uwr.1_Frame_Shift_Ins_p.D132fs|IL32_uc002ctu.2_Frame_Shift_Ins_p.D163fs	NM_004221	NP_004212	P24001	IL32_HUMAN	interleukin 32 isoform B	218					cell adhesion|defense response|immune response	extracellular space	cytokine activity			pancreas(1)	1						CCACGGGGGGACAAGGAGGAGC	0.574													22	157	---	---	---	---					
LYPD3	27076	broad.mit.edu	37	19	43969653	43969655	+	In_Frame_Del	DEL	AGC	-	-	rs141441894	byFrequency	TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr19:43969653_43969655delAGC	uc002owl.1	-	1	177_179	c.69_71delGCT	c.(67-72)CTGCTT>CTT	p.23_24LL>L	LYPD3_uc002owm.2_In_Frame_Del_p.23_24LL>L	NM_014400	NP_055215	O95274	LYPD3_HUMAN	GPI-anchored metastasis-associated protein	23_24						anchored to plasma membrane				pancreas(1)	1		Prostate(69;0.0153)				ACCTCCGCGAAGCAGCAGCAGCA	0.675													7	145	---	---	---	---					
TRERF1	55809	broad.mit.edu	37	6	42196333	42196333	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:42196333delT	uc003osd.2	-	18	3916	c.3353delA	c.(3352-3354)AAGfs	p.K1118fs	TRERF1_uc011duq.1_Frame_Shift_Del_p.K1035fs|TRERF1_uc003osb.2_Frame_Shift_Del_p.K886fs|TRERF1_uc003osc.2_Frame_Shift_Del_p.K874fs|TRERF1_uc003ose.2_Frame_Shift_Del_p.K1138fs	NM_033502	NP_277037	Q96PN7	TREF1_HUMAN	transcriptional regulating factor 1	1118	Interacts with CREBBP.				cholesterol catabolic process|homeostatic process|multicellular organismal development|positive regulation of transcription, DNA-dependent|regulation of hormone biosynthetic process|steroid biosynthetic process	nucleus	DNA bending activity|ligand-dependent nuclear receptor transcription coactivator activity|RNA polymerase II transcription cofactor activity|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			ovary(3)|pancreas(1)|skin(1)	5	Colorectal(47;0.196)		Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CTTCTGAGCCTTTTGCCTCTG	0.542													7	1169	---	---	---	---					
C6orf223	221416	broad.mit.edu	37	6	43970504	43970509	+	In_Frame_Del	DEL	GCGGCG	-	-	rs72369323		TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr6:43970504_43970509delGCGGCG	uc003own.2	+	4	388_393	c.370_375delGCGGCG	c.(370-375)GCGGCGdel	p.AA130del	uc003owm.1_Intron|C6orf223_uc003owo.2_In_Frame_Del_p.AA110del	NM_153246	NP_694978	Q8N319	CF223_HUMAN	hypothetical protein LOC221416	130_131	Ala-rich.										0	all_cancers(18;2.28e-07)|all_epithelial(2;1.62e-08)|Lung NSC(15;0.000172)|all_lung(25;0.000533)|Hepatocellular(11;0.00309)|Ovarian(13;0.0437)		all cancers(41;0.00141)|Colorectal(64;0.00337)|COAD - Colon adenocarcinoma(64;0.00536)|STAD - Stomach adenocarcinoma(11;0.217)			GGTAGAGCGCgcggcggcggcggcgg	0.636													5	7	---	---	---	---					
POM121	9883	broad.mit.edu	37	7	72413723	72413724	+	In_Frame_Ins	INS	-	CTC	CTC	rs148686669	byFrequency	TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chr7:72413723_72413724insCTC	uc003twk.2	+	11	3191_3192	c.3191_3192insCTC	c.(3190-3192)TTC>TTCTCC	p.1064_1065insS	POM121_uc003twj.2_In_Frame_Ins_p.799_800insS|POM121_uc010lam.1_In_Frame_Ins_p.799_800insS	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	1064_1065	Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				ACTGCTGTCTTCTTCGGTGCAG	0.663													13	96	---	---	---	---					
BRCC3	79184	broad.mit.edu	37	X	154344998	154344998	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MK-06A-11D-A196-08	TCGA-EE-A2MK-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d0ad57ac-586d-456a-a71e-6b4b9e0a885f	8b4304b3-7a86-4439-9afa-33d978b6d336	g.chrX:154344998delG	uc004fna.2	+	10	861	c.768delG	c.(766-768)CTGfs	p.L256fs	BRCC3_uc004fnb.2_Frame_Shift_Del_p.L231fs	NM_024332	NP_077308	P46736	BRCC3_HUMAN	BRCA1/BRCA2-containing complex, subunit 3	256					double-strand break repair|G2/M transition DNA damage checkpoint|histone H2A K63-linked deubiquitination|positive regulation of DNA repair|response to X-ray	BRCA1-A complex|BRISC complex|nuclear ubiquitin ligase complex	enzyme regulator activity|metal ion binding|metallopeptidase activity|polyubiquitin binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			lung(3)|ovary(1)|large_intestine(1)|breast(1)	6	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TTACACATCTGGACTCAGTAA	0.398													2	4	---	---	---	---					
