Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
MIR200A	406983	broad.mit.edu	37	1	1103313	1103313	+	RNA	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:1103313G>A	hsa-mir-200a|MI0000737	+			c.71G>A			uc010nye.1_RNA|uc010nyf.1_5'Flank|MIR429_hsa-mir-429|MI0001641_5'Flank																	0						GTCTGGTAACGATGTTCAAAG	0.562000													6	5					0	0	0.001984	0	0
ACTRT2	140625	broad.mit.edu	37	1	2938965	2938965	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:2938965C>T	uc001ajz.2	+	1	920	c.715C>T	c.(715-717)CTG>TTG	p.L239L		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	239						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		GGAGGAGGTCCTGAGGGAGTA	0.652000													21	49					0	0	0.002780	0	0
TP73	7161	broad.mit.edu	37	1	3644215	3644215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:3644215C>T	uc001akp.2	+	8	976	c.866C>T	c.(865-867)TCC>TTC	p.S289F	TP73_uc001akq.2_Missense_Mutation_p.S289F|TP73_uc010nzj.1_Missense_Mutation_p.S240F|TP73_uc001akr.2_Missense_Mutation_p.S240F|TP73_uc009vlk.1_Missense_Mutation_p.S240F|TP73_uc001aks.2_Missense_Mutation_p.S240F|TP73_uc010nzk.1_Missense_Mutation_p.S218F|TP73_uc010nzl.1_5'UTR	NM_005427	NP_005418	O15350	P73_HUMAN	tumor protein p73 isoform a	289	DNA-binding (Potential).				cellular response to UV|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|mismatch repair|mitotic cell cycle G1/S transition DNA damage checkpoint|negative regulation of JUN kinase activity|negative regulation of neuron apoptosis|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|protein tetramerization|response to gamma radiation|response to X-ray	chromatin|cytosol|transcription factor complex	chromatin binding|damaged DNA binding|double-stranded DNA binding|metal ion binding|p53 binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|transcription regulatory region DNA binding|transcription repressor activity			ovary(1)|lung(1)	2	all_cancers(77;0.0395)|Ovarian(185;0.0634)|Lung NSC(156;0.188)|all_lung(157;0.198)	all_epithelial(116;7.42e-17)|all_lung(118;1.86e-06)|Lung NSC(185;0.000163)|Renal(390;0.00357)|Breast(487;0.00446)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Lung SC(97;0.109)|Ovarian(437;0.127)		Epithelial(90;5.57e-38)|OV - Ovarian serous cystadenocarcinoma(86;1.87e-22)|GBM - Glioblastoma multiforme(42;5.72e-16)|Colorectal(212;2.22e-05)|COAD - Colon adenocarcinoma(227;8.48e-05)|Kidney(185;0.000539)|BRCA - Breast invasive adenocarcinoma(365;0.000868)|STAD - Stomach adenocarcinoma(132;0.0072)|KIRC - Kidney renal clear cell carcinoma(229;0.00751)|Lung(427;0.226)		GGCCGCCGGTCCTTTGAGGGC	0.662000													13	18					0	0	0.003163	0	0
Unknown	0	broad.mit.edu	37	1	9211855	9211855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:9211855G>A	uc009vmq.2	-	2	426	c.320C>T	c.(319-321)CCC>CTC	p.P107L	MIR34A_hsa-mir-34a|MI0000268_5'Flank					EF609116																		GCATCCGGAGGGGACTCGGGG	0.488000													55	42					0	0	0.003610	0	0
H6PD	9563	broad.mit.edu	37	1	9324505	9324505	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:9324505C>T	uc001apt.2	+	5	2226	c.1953C>T	c.(1951-1953)ATC>ATT	p.I651I		NM_004285	NP_004276	O95479	G6PE_HUMAN	hexose-6-phosphate dehydrogenase precursor	651	6-phosphogluconolactonase.					endoplasmic reticulum lumen	6-phosphogluconolactonase activity|glucose 1-dehydrogenase|glucose-6-phosphate dehydrogenase activity|NADP binding				0	all_lung(157;0.23)	all_epithelial(116;1.28e-19)|all_lung(118;5.22e-06)|Lung NSC(185;1.98e-05)|Renal(390;0.000147)|Breast(348;0.00109)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;1.88e-07)|COAD - Colon adenocarcinoma(227;7.47e-05)|Kidney(185;0.000244)|KIRC - Kidney renal clear cell carcinoma(229;0.000905)|STAD - Stomach adenocarcinoma(132;0.00176)|BRCA - Breast invasive adenocarcinoma(304;0.00183)|READ - Rectum adenocarcinoma(331;0.0419)	NADH(DB00157)	ACTACAACATCCACCCCATGC	0.652000													47	35					0	0	0.003610	0	0
KIF1B	23095	broad.mit.edu	37	1	10335516	10335516	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:10335516C>T	uc001aqx.3	+	11	1115	c.913C>T	c.(913-915)CCC>TCC	p.P305S	KIF1B_uc001aqv.3_Missense_Mutation_p.P299S|KIF1B_uc001aqw.3_Missense_Mutation_p.P299S|KIF1B_uc001aqy.2_Missense_Mutation_p.P305S|KIF1B_uc001aqz.2_Missense_Mutation_p.P305S|KIF1B_uc001ara.2_Missense_Mutation_p.P305S|KIF1B_uc001arb.2_Missense_Mutation_p.P305S	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	305	Kinesin-motor.|Interaction with KBP.				anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		AGATTTTATTCCCTACAGGGA	0.318000													38	73					0	0	0.007835	0	0
KIF1B	23095	broad.mit.edu	37	1	10431265	10431265	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:10431265C>A	uc001aqx.3	+	45	5093	c.4891C>A	c.(4891-4893)CCC>ACC	p.P1631T	KIF1B_uc001aqw.3_Missense_Mutation_p.P1585T|KIF1B_uc001aqy.2_Missense_Mutation_p.P1605T|KIF1B_uc001aqz.2_Missense_Mutation_p.P1631T|KIF1B_uc001ara.2_Missense_Mutation_p.P1591T|KIF1B_uc001arb.2_Missense_Mutation_p.P1617T	NM_015074	NP_055889	O60333	KIF1B_HUMAN	kinesin family member 1B isoform b	1631					anterograde axon cargo transport|apoptosis|neuromuscular synaptic transmission|neuron-neuron synaptic transmission	cytoplasmic vesicle membrane|microtubule|microtubule associated complex|mitochondrion	ATP binding|ATPase activity|kinesin binding|microtubule motor activity|protein binding			ovary(2)|upper_aerodigestive_tract(1)	3	Ovarian(185;0.203)	all_lung(284;1.31e-05)|Lung NSC(185;2.2e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0259)|Colorectal(212;9.79e-07)|COAD - Colon adenocarcinoma(227;0.000143)|BRCA - Breast invasive adenocarcinoma(304;0.000413)|Kidney(185;0.00134)|KIRC - Kidney renal clear cell carcinoma(229;0.0037)|STAD - Stomach adenocarcinoma(132;0.0113)|READ - Rectum adenocarcinoma(331;0.0642)		CACCCTCACTCCCTCCTCCAC	0.483000													33	42					9.78485e-24	2.15516e-23	0.002836	1	0
AADACL3	126767	broad.mit.edu	37	1	12785762	12785762	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:12785762C>T	uc009vnn.1	+	4	1085	c.852C>T	c.(850-852)ATC>ATT	p.I284I	AADACL3_uc001aug.1_Silent_p.I214I	NM_001103170	NP_001096640	Q5VUY0	ADCL3_HUMAN	arylacetamide deacetylase-like 3 isoform 1	284							hydrolase activity				0	Ovarian(185;0.249)	Lung NSC(185;8.27e-05)|all_lung(284;9.47e-05)|Renal(390;0.000147)|Colorectal(325;0.000583)|Breast(348;0.000596)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.13e-06)|COAD - Colon adenocarcinoma(227;0.000274)|BRCA - Breast invasive adenocarcinoma(304;0.000311)|Kidney(185;0.00217)|KIRC - Kidney renal clear cell carcinoma(229;0.00579)|STAD - Stomach adenocarcinoma(313;0.00743)|READ - Rectum adenocarcinoma(331;0.0649)		AAACCTGCATCGTGAGCTGTG	0.512000													20	30					0	0	0.001523	0	0
LOC649330	649330	broad.mit.edu	37	1	12908038	12908038	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:12908038C>T	uc009vno.2	-	1	200	c.105G>A	c.(103-105)GCG>GCA	p.A35A	HNRNPCL1_uc010obf.1_Silent_p.A35A	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	35							nucleic acid binding|nucleotide binding				0						TGGAAAAGATCGCCTCCACAT	0.473000													17	63					0	0	0.006122	0	0
DNAJC16	23341	broad.mit.edu	37	1	15860772	15860772	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:15860772T>C	uc001aws.2	+	3	328	c.208T>C	c.(208-210)TTC>CTC	p.F70L	DNAJC16_uc001awr.1_Missense_Mutation_p.F70L|DNAJC16_uc001awt.2_5'UTR	NM_015291	NP_056106	Q9Y2G8	DJC16_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 16	70	Cytoplasmic (Potential).|J.				cell redox homeostasis|protein folding	integral to membrane	heat shock protein binding|unfolded protein binding			urinary_tract(1)|lung(1)|kidney(1)	3		Colorectal(325;0.00108)|Renal(390;0.00145)|Breast(348;0.00173)|all_lung(284;0.00459)|Lung NSC(340;0.00499)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0798)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;9.18e-07)|COAD - Colon adenocarcinoma(227;4.5e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000133)|KIRC - Kidney renal clear cell carcinoma(229;0.00262)|STAD - Stomach adenocarcinoma(313;0.00774)|READ - Rectum adenocarcinoma(331;0.0657)		AGAAGACAAGTTCATTCAAAT	0.403000													36	35					0	0	0.003610	0	0
SPEN	23013	broad.mit.edu	37	1	16262492	16262492	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:16262492C>A	uc001axk.1	+	11	9961	c.9757C>A	c.(9757-9759)CCT>ACT	p.P3253T	SPEN_uc010obp.1_Missense_Mutation_p.P3212T	NM_015001	NP_055816	Q96T58	MINT_HUMAN	spen homolog, transcriptional regulator	3253	Pro-rich.				interspecies interaction between organisms|negative regulation of transcription, DNA-dependent|Notch signaling pathway	nucleus	nucleotide binding|protein binding|RNA binding			ovary(6)|breast(3)|lung(2)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15		Colorectal(325;0.000258)|Breast(348;0.000278)|Lung NSC(340;0.000419)|Renal(390;0.000518)|all_lung(284;0.000567)|Ovarian(437;0.0129)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0185)|Colorectal(212;5.96e-07)|COAD - Colon adenocarcinoma(227;3.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000115)|Kidney(64;0.000212)|KIRC - Kidney renal clear cell carcinoma(64;0.003)|STAD - Stomach adenocarcinoma(313;0.013)|READ - Rectum adenocarcinoma(331;0.0681)		cgtccctgtccctgtccccct	0.418000													15	11					1.52009e-12	3.3143e-12	0.003163	1	0
MST1P9	11223	broad.mit.edu	37	1	17084510	17084510	+	Silent	SNP	G	A	A	rs61769731	by1000genomes	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:17084510G>A	uc010ock.1	-	12	1588	c.1588C>T	c.(1588-1590)CTA>TTA	p.L530L	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_Silent_p.L130L	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						ACCCGCTGTAGGCCTGGCTCT	0.577000													7	92					0	0	0.003080	0	0
DDOST	1650	broad.mit.edu	37	1	20979121	20979121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:20979121G>A	uc001bdo.1	-	10	1357	c.1214C>T	c.(1213-1215)TCC>TTC	p.S405F	DDOST_uc009vpw.1_Missense_Mutation_p.S408F|DDOST_uc010odd.1_Missense_Mutation_p.S204F|DDOST_uc010ode.1_Missense_Mutation_p.S368F	NM_005216	NP_005207	P39656	OST48_HUMAN	dolichyl-diphosphooligosaccharide-protein	405	Lumenal (Potential).				innate immune response|post-translational protein modification|response to cytokine stimulus|T cell activation	integral to membrane|microsome|oligosaccharyltransferase complex	dolichyl-diphosphooligosaccharide-protein glycotransferase activity|protein binding				0		all_lung(284;2.98e-05)|Lung NSC(340;3.25e-05)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0181)|COAD - Colon adenocarcinoma(152;1.17e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000141)|Kidney(64;0.000177)|GBM - Glioblastoma multiforme(114;0.00046)|KIRC - Kidney renal clear cell carcinoma(64;0.00262)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TACCTGAGTGGAAGAGTACAG	0.532000													36	72					0	0	0.001951	0	0
HSPG2	3339	broad.mit.edu	37	1	22214013	22214013	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:22214013C>T	uc001bfj.2	-	8	898	c.858G>A	c.(856-858)GGG>GGA	p.G286G	HSPG2_uc009vqd.2_Silent_p.G286G|HSPG2_uc009vqe.1_Missense_Mutation_p.G185D	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	286	LDL-receptor class A 2.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	CCTCCTGGGGCCCACAGGGCA	0.662000													29	44					0	0	0.007291	0	0
ASAP3	55616	broad.mit.edu	37	1	23767937	23767937	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:23767937C>T	uc001bha.2	-	9	901	c.777G>A	c.(775-777)CAG>CAA	p.Q259Q	ASAP3_uc010odz.1_Silent_p.Q128Q|ASAP3_uc010oea.1_Silent_p.Q250Q|ASAP3_uc001bhb.2_5'Flank	NM_017707	NP_060177	Q8TDY4	ASAP3_HUMAN	ArfGAP with SH3 domain, ankyrin repeat and PH	259	Potential.				regulation of ARF GTPase activity	cytoplasm	ARF GTPase activator activity|zinc ion binding			large_intestine(1)|ovary(1)|skin(1)	3						GGGTCAGCTTCTGTAGCTCGT	0.587000													12	25					0	0	0.002450	0	0
MYOM3	127294	broad.mit.edu	37	1	24413209	24413209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:24413209C>T	uc001bin.3	-	15	1886	c.1723G>A	c.(1723-1725)GTG>ATG	p.V575M	MYOM3_uc001bim.3_Missense_Mutation_p.V232M|MYOM3_uc001bio.2_Missense_Mutation_p.V575M|MYOM3_uc001bip.1_Missense_Mutation_p.V232M	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	575	Fibronectin type-III 2.									skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		ATTGCTCGCACTCTGAAGACA	0.617000													43	57					0	0	0.003610	0	0
CATSPER4	378807	broad.mit.edu	37	1	26517206	26517206	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:26517206G>A	uc010oez.1	+	1	88	c.88G>A	c.(88-90)GGG>AGG	p.G30R	CATSPER4_uc010oey.1_5'UTR|CATSPER4_uc009vsf.2_RNA	NM_198137	NP_937770	Q7RTX7	CTSR4_HUMAN	cation channel, sperm associated 4	30	Cytoplasmic (Potential).				cell differentiation|multicellular organismal development|spermatogenesis	cilium|flagellar membrane|integral to membrane	calcium channel activity|voltage-gated ion channel activity			ovary(1)	1		all_cancers(24;2.05e-18)|Colorectal(325;0.000147)|Renal(390;0.00211)|all_lung(284;0.00218)|Lung NSC(340;0.00239)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.051)|Breast(348;0.0589)|all_neural(195;0.0687)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;3.52e-26)|Colorectal(126;1.34e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.000755)|BRCA - Breast invasive adenocarcinoma(304;0.000995)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00878)|READ - Rectum adenocarcinoma(331;0.0649)		GGACCGTATGGGGTTTGGAGG	0.602000													50	22					0	0	0.003610	0	0
IFI6	2537	broad.mit.edu	37	1	27992928	27992928	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:27992928G>A	uc001boo.1	-	5	480	c.357C>T	c.(355-357)ACC>ACT	p.T119T	IFI6_uc001bon.1_Silent_p.T127T|IFI6_uc001bop.1_Silent_p.T123T	NM_002038	NP_002029	P09912	IFI6_HUMAN	interferon, alpha-inducible protein 6 isoform a	119					anti-apoptosis|negative regulation of caspase activity|negative regulation of mitochondrial depolarization|release of cytochrome c from mitochondria|type I interferon-mediated signaling pathway	integral to membrane|mitochondrion	protein binding			ovary(1)	1		Colorectal(325;3.46e-05)|all_lung(284;4.29e-05)|Lung NSC(340;7.75e-05)|Renal(390;0.00121)|Breast(348;0.0021)|Ovarian(437;0.00503)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.11e-24)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00244)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		GATACTTGTGGGTGGCGTAGC	0.527000													38	31					0	0	0.007835	0	0
MED18	54797	broad.mit.edu	37	1	28661008	28661008	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:28661008C>T	uc001bpt.3	+	3	399	c.154C>T	c.(154-156)CTT>TTT	p.L52F	MED18_uc009vtg.2_Missense_Mutation_p.L52F	NM_017638	NP_060108	Q9BUE0	MED18_HUMAN	mediator complex subunit 18	52					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	mediator complex	identical protein binding				0		Colorectal(325;0.000147)|Lung NSC(340;0.000818)|all_lung(284;0.000996)|Renal(390;0.00357)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|all_neural(195;0.0557)|Ovarian(437;0.113)		OV - Ovarian serous cystadenocarcinoma(117;2.36e-22)|Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00269)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0141)|READ - Rectum adenocarcinoma(331;0.0649)		TGAGACTTTCCTTGACCATGA	0.522000													193	168					0	0	0.003610	0	0
C1orf94	84970	broad.mit.edu	37	1	34663234	34663234	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:34663234C>T	uc001bxs.3	+	2	558	c.159C>T	c.(157-159)TTC>TTT	p.F53F	C1orf94_uc001bxt.2_Silent_p.F243F	NM_032884	NP_116273	Q6P1W5	CA094_HUMAN	hypothetical protein LOC84970 isoform b	53							protein binding				0		Myeloproliferative disorder(586;0.0393)				TGTCCCAGTTCCCACTGAAGT	0.547000													7	16					0	0	0.003080	0	0
C1orf210	149466	broad.mit.edu	37	1	43748580	43748580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:43748580C>T	uc001cit.3	-	3	452	c.218G>A	c.(217-219)GGA>GAA	p.G73E		NM_182517	NP_872323	Q8IVY1	CA210_HUMAN	hypothetical protein LOC149466	73	Cytoplasmic (Potential).					integral to membrane					0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0333)				GCCTCCCCTTCCTGTCTCAGG	0.612000													26	55					0	0	0.006320	0	0
CYP4Z2P	163720	broad.mit.edu	37	1	47364570	47364570	+	RNA	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:47364570C>T	uc001cqo.1	-	2		c.305G>A			CYP4Z2P_uc009vyn.1_RNA	NR_002788				Homo sapiens cDNA FLJ40054 fis, clone TBAES2000315, weakly similar to CYTOCHROME P450 4A1 (EC 1.14.15.3).												0						TGAAGAACATCGTAAAGGGTC	0.433000													8	18					0	0	0.003080	0	0
DMRTA2	63950	broad.mit.edu	37	1	50885198	50885199	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:50885198_50885199GG>AA	uc010ona.1	-	2	863_864	c.767_768CC>TT	c.(766-768)TCC>TTT	p.S256F	DMRTA2_uc010onb.1_Missense_Mutation_p.S256F	NM_032110	NP_115486	Q96SC8	DMTA2_HUMAN	DMRT-like family A2	256	Gly-rich.				sex differentiation	nucleus	DNA binding|metal ion binding|sequence-specific DNA binding transcription factor activity				0						CTGCCTCTTTGGAGGCCCGAGC	0.718000													6	6					0	0	0.004672	0	0
ACOT11	26027	broad.mit.edu	37	1	55069586	55069586	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:55069586C>T	uc001cxm.1	+	11	1210	c.1128C>T	c.(1126-1128)TCC>TCT	p.S376S	ACOT11_uc001cxj.1_Silent_p.S254S|ACOT11_uc001cxl.1_Silent_p.S376S	NM_015547	NP_056362	Q8WXI4	ACO11_HUMAN	thioesterase, adipose associated isoform BFIT1	376	START.				fatty acid metabolic process|intracellular signal transduction|response to cold		acyl-CoA thioesterase activity|carboxylesterase activity			central_nervous_system(1)	1						TGCCCCTCTCCGTCCCCTGGG	0.562000													28	69					0	0	0.002445	0	0
C1orf175	374977	broad.mit.edu	37	1	55119671	55119671	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:55119671G>A	uc010ooe.1	+	3	1396	c.1072G>A	c.(1072-1074)GAT>AAT	p.D358N	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxo.2_Missense_Mutation_p.D358N|C1orf175_uc010ooc.1_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Intron|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc010oog.1_Missense_Mutation_p.D358N|C1orf175_uc010ooh.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	358						integral to membrane	binding				0						CAGTCAGCAGGATGATGCCAA	0.567000													11	27					0	0	0.000673	0	0
BSND	7809	broad.mit.edu	37	1	55472707	55472707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:55472707G>A	uc001cye.2	+	3	553	c.310G>A	c.(310-312)GAA>AAA	p.E104K		NM_057176	NP_476517	Q8WZ55	BSND_HUMAN	barttin	104	Cytoplasmic (Potential).					basolateral plasma membrane|cytoplasm|integral to plasma membrane|protein complex				ovary(1)|skin(1)	2						GCTGTGGGAGGAAGCCGCCTA	0.597000													33	17					0	0	0.003755	0	0
RAVER2	55225	broad.mit.edu	37	1	65247190	65247190	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:65247190C>T	uc001dbs.1	+	4	992	c.914C>T	c.(913-915)TCC>TTC	p.S305F	RAVER2_uc001dbt.1_Missense_Mutation_p.S184F|RAVER2_uc010opb.1_Missense_Mutation_p.S184F	NM_018211	NP_060681	Q9HCJ3	RAVR2_HUMAN	ribonucleoprotein, PTB-binding 2	305	RRM 3.					cytoplasm|nucleus	nucleotide binding|RNA binding			large_intestine(1)	1						GTCCAGGTTTCCTTCTGTGCT	0.507000													33	30					0	0	0.003271	0	0
ELTD1	64123	broad.mit.edu	37	1	79470895	79470895	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:79470895G>A	uc001diq.3	-	2	188	c.32C>T	c.(31-33)TCC>TTC	p.S11F		NM_022159	NP_071442	Q9HBW9	ELTD1_HUMAN	EGF, latrophilin and seven transmembrane domain	11					neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(1)|skin(1)	2				COAD - Colon adenocarcinoma(225;0.0905)|Colorectal(170;0.103)|all cancers(265;0.105)|Epithelial(280;0.148)		CAACAAAGTGGAAAAAACCAC	0.323000													26	30					0	0	0.004656	0	0
COL24A1	255631	broad.mit.edu	37	1	86557978	86557978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:86557978G>A	uc001dlj.2	-	6	1667	c.1625C>T	c.(1624-1626)TCC>TTC	p.S542F	COL24A1_uc010osd.1_5'UTR|COL24A1_uc001dlk.2_RNA|COL24A1_uc010ose.1_RNA|COL24A1_uc010osf.1_RNA|COL24A1_uc009wcq.2_Missense_Mutation_p.S542F	NM_152890	NP_690850	Q17RW2	COOA1_HUMAN	collagen, type XXIV, alpha 1 precursor	542	Collagen-like 1.				cell adhesion	collagen	extracellular matrix structural constituent			ovary(3)|central_nervous_system(1)|skin(1)	5				all cancers(265;0.0627)|Epithelial(280;0.0689)		TTGACCTGGGGAAAATCCTGG	0.303000													41	54					0	0	0.003610	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94668153	94668153	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:94668153G>A	uc001dqj.3	-	11	1459	c.1090C>T	c.(1090-1092)CTC>TTC	p.L364F	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.L364F	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	364	Potential.				Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		TGCTTGTTGAGATTTTTTGCT	0.383000													73	73					0	0	0.003610	0	0
DPYD	1806	broad.mit.edu	37	1	98039524	98039524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:98039524C>T	uc001drv.2	-	11	1268	c.1131G>A	c.(1129-1131)ATG>ATA	p.M377I		NM_000110	NP_000101	Q12882	DPYD_HUMAN	dihydropyrimidine dehydrogenase isoform 1	377					'de novo' pyrimidine base biosynthetic process|purine base catabolic process|thymidine catabolic process|thymine catabolic process|UMP biosynthetic process|uracil catabolic process	cytosol	4 iron, 4 sulfur cluster binding|dihydroorotate oxidase activity|dihydropyrimidine dehydrogenase (NADP+) activity|electron carrier activity|flavin adenine dinucleotide binding|metal ion binding|NADP binding|protein homodimerization activity			ovary(3)|skin(3)|breast(2)	8		all_epithelial(167;0.000185)|all_lung(203;0.00318)|Lung NSC(277;0.00994)		Colorectal(170;0.0165)|Epithelial(280;0.0526)|all cancers(265;0.104)|READ - Rectum adenocarcinoma(84;0.171)|Lung(183;0.216)	Capecitabine(DB01101)|Enfuvirtide(DB00109)	TAGCAAGTTCCATCTAAAACA	0.353000													11	11					0	0	0.000978	0	0
NTNG1	22854	broad.mit.edu	37	1	107867472	107867473	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:107867472_107867473GG>AA	uc001dvh.3	+	3	1533_1534	c.815_816GG>AA	c.(814-816)GGG>GAA	p.G272E	NTNG1_uc001dvf.3_Missense_Mutation_p.G272E|NTNG1_uc010out.1_Missense_Mutation_p.G272E|NTNG1_uc001dvc.3_Missense_Mutation_p.G272E|NTNG1_uc001dvd.1_Missense_Mutation_p.G272E	NM_001113226	NP_001106697	Q9Y2I2	NTNG1_HUMAN	netrin G1 isoform 1	272	Laminin N-terminal.				axonogenesis	anchored to plasma membrane	protein binding			large_intestine(2)|ovary(2)|skin(2)	6		all_epithelial(167;1.39e-05)|all_lung(203;0.000115)|Lung NSC(277;0.000238)|Breast(1374;0.243)		Lung(183;0.0946)|BRCA - Breast invasive adenocarcinoma(282;0.237)|Epithelial(280;0.245)		CCAGCCGTTGGGGAAATATTTG	0.450000													5	8					0	0	0.004672	0	0
VAV3	10451	broad.mit.edu	37	1	108293799	108293799	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:108293799C>T	uc001dvk.1	-	13	1253	c.1199G>A	c.(1198-1200)CGA>CAA	p.R400Q	VAV3_uc010ouw.1_Missense_Mutation_p.R400Q|VAV3_uc001dvl.1_Missense_Mutation_p.R224Q|VAV3_uc010oux.1_Missense_Mutation_p.R400Q	NM_006113	NP_006104	Q9UKW4	VAV3_HUMAN	vav 3 guanine nucleotide exchange factor isoform	400	PH.				angiogenesis|apoptosis|B cell receptor signaling pathway|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|platelet activation|positive regulation of B cell proliferation|regulation of Rho protein signal transduction|response to DNA damage stimulus|response to drug|small GTPase mediated signal transduction	cytosol	GTPase activator activity|metal ion binding|SH3/SH2 adaptor activity			ovary(5)|lung(2)|breast(2)	9		all_epithelial(167;5.38e-05)|all_lung(203;0.000314)|Lung NSC(277;0.000594)		Colorectal(144;0.0331)|Lung(183;0.128)|Epithelial(280;0.204)		TCCCTGAGGTCGTCCAAAAAG	0.299000													23	20					0	0	0.007291	0	0
MOV10	4343	broad.mit.edu	37	1	113240676	113240676	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:113240676C>T	uc001eck.2	+	15	2529	c.2259C>T	c.(2257-2259)GCC>GCT	p.A753A	MOV10_uc001ecl.2_Intron|MOV10_uc001ecn.2_Silent_p.A753A|MOV10_uc001ecm.2_Silent_p.A693A	NM_001130079	NP_001123551	Q9HCE1	MOV10_HUMAN	Mov10, Moloney leukemia virus 10, homolog	753					mRNA cleavage involved in gene silencing by miRNA|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasmic mRNA processing body	ATP binding|helicase activity|protein binding|RNA binding			ovary(4)|skin(1)	5	Lung SC(450;0.246)	all_cancers(81;3.31e-11)|all_epithelial(167;5.69e-10)|all_lung(203;3.73e-05)|Breast(1374;0.000525)|Lung NSC(69;0.000954)|Ovarian(761;0.0367)|Lung SC(238;0.114)		OV - Ovarian serous cystadenocarcinoma(397;3.99e-67)|all cancers(265;1e-62)|Epithelial(280;4.78e-61)|Lung(183;0.0234)|Colorectal(144;0.0686)|READ - Rectum adenocarcinoma(129;0.0929)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|BRCA - Breast invasive adenocarcinoma(282;0.24)		AGCTGCAGGCCTGTGCTGATG	0.607000													48	72					0	0	0.003610	0	0
PTPN22	26191	broad.mit.edu	37	1	114372628	114372628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:114372628G>A	uc001eds.2	-	17	2207	c.2077C>T	c.(2077-2079)CCC>TCC	p.P693S	PTPN22_uc009wgq.2_Missense_Mutation_p.P638S|PTPN22_uc010owo.1_Missense_Mutation_p.P449S|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.P693S|PTPN22_uc009wgs.2_Missense_Mutation_p.P566S	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	693					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGAGGTGGGGGAGAAGAACGA	0.363000													48	41					0	0	0.003610	0	0
NRAS	4893	broad.mit.edu	37	1	115256528	115256528	+	Missense_Mutation	SNP	T	A	A	rs121913255		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:115256528T>A	uc009wgu.2	-	3	437	c.183A>T	c.(181-183)CAA>CAT	p.Q61H		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61	GTP.		Q -> K (in neuroblastoma cell).		activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TGTACTCTTCTTGTCCAGCTG	0.463000	Q61H(ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61H(RD_SOFT_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			123	104					0	0	0.003610	0	0
TSPAN2	10100	broad.mit.edu	37	1	115604780	115604780	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:115604780C>T	uc001eft.2	-	3	308	c.246G>A	c.(244-246)CGG>CGA	p.R82R		NM_005725	NP_005716	O60636	TSN2_HUMAN	tetraspan 2	82	Cytoplasmic (Potential).			AMR -> PCW (in Ref. 1; AAC69715).		integral to membrane					0	Lung SC(450;0.211)	all_cancers(81;2.9e-07)|all_epithelial(167;1.42e-06)|all_lung(203;6.72e-06)|Lung NSC(69;1.13e-05)|Acute lymphoblastic leukemia(138;0.191)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)|all cancers(265;0.159)|Epithelial(280;0.179)		ATTGCGACTCCCGCATGGCTC	0.453000													6	5					0	0	0.001984	0	0
NBPF9	400818	broad.mit.edu	37	1	144828688	144828688	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:144828688C>T	uc009wig.1	+	23	2809	c.2733C>T	c.(2731-2733)CAC>CAT	p.H911H	NBPF9_uc010oxn.1_Silent_p.H809H|NBPF9_uc010oxo.1_Silent_p.H836H|NBPF9_uc010oxr.1_Silent_p.H938H|NBPF9_uc010oxt.1_Silent_p.H726H|NBPF9_uc001ekg.1_Silent_p.H238H|NBPF9_uc001ekk.1_Silent_p.H482H|NBPF10_uc009wir.2_Intron|NBPF9_uc010oyd.1_Silent_p.H238H|NBPF9_uc010oye.1_Intron|NBPF9_uc001eli.3_RNA|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|NBPF9_uc001elp.2_Silent_p.H571H|uc001elr.3_5'Flank	NM_001037675	NP_001032764	Q3BBV1	NBPFK_HUMAN	hypothetical protein LOC400818	911	NBPF 7.					cytoplasm					0						AGGAACAGCACATCAGCTTCG	0.433000													17	35					0	0	0.001216	0	0
GJA8	2703	broad.mit.edu	37	1	147380919	147380919	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:147380919C>T	uc001epu.1	+	2	900	c.837C>T	c.(835-837)TTC>TTT	p.F279F		NM_005267	NP_005258	P48165	CXA8_HUMAN	connexin 50	279	Cytoplasmic (Potential).				cell communication|visual perception	connexon complex|integral to plasma membrane	channel activity			ovary(2)|large_intestine(2)|breast(1)|skin(1)	6	all_hematologic(923;0.0276)					CCCACTATTTCCCCTTGACCG	0.527000													26	42					0	0	0.007291	0	0
OTUD7B	56957	broad.mit.edu	37	1	149939341	149939342	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:149939341_149939342GG>AA	uc001etn.2	-	4	735_736	c.379_380CC>TT	c.(379-381)CCC>TTC	p.P127F	OTUD7B_uc001eto.2_Intron	NM_020205	NP_064590	Q6GQQ9	OTU7B_HUMAN	zinc finger protein Cezanne	127					negative regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|microtubule cytoskeleton|nucleus	cysteine-type peptidase activity|DNA binding|protein binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3	Breast(34;0.0009)|Ovarian(49;0.0265)|all_hematologic(923;0.0597)|Hepatocellular(266;0.161)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.171)|STAD - Stomach adenocarcinoma(528;0.247)			CATTTCCAGGGGGTGCTCATTG	0.569000													11	20					0	0	0.004672	0	0
POGZ	23126	broad.mit.edu	37	1	151380947	151380947	+	Silent	SNP	A	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:151380947A>T	uc001eyd.1	-	14	2478	c.2172T>A	c.(2170-2172)CCT>CCA	p.P724P	POGZ_uc001eye.1_Silent_p.P671P|POGZ_uc010pdb.1_Silent_p.P715P|POGZ_uc001eyf.1_Silent_p.P680P|POGZ_uc010pdc.1_Silent_p.P662P|POGZ_uc009wmv.1_Silent_p.P629P|POGZ_uc010pdd.1_Silent_p.P215P	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	724					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			AGACAGGCAGAGGGTCCATTG	0.582000													11	27					0	0	0.000978	0	0
POGZ	23126	broad.mit.edu	37	1	151381186	151381186	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:151381186A>C	uc001eyd.1	-	13	2351	c.2045T>G	c.(2044-2046)TTG>TGG	p.L682W	POGZ_uc001eye.1_Missense_Mutation_p.L629W|POGZ_uc010pdb.1_Missense_Mutation_p.L673W|POGZ_uc001eyf.1_Missense_Mutation_p.L638W|POGZ_uc010pdc.1_Missense_Mutation_p.L620W|POGZ_uc009wmv.1_Missense_Mutation_p.L587W|POGZ_uc010pdd.1_Missense_Mutation_p.L173W	NM_015100	NP_055915	Q7Z3K3	POGZ_HUMAN	pogo transposable element with ZNF domain	682					cell division|kinetochore assembly|mitotic sister chromatid cohesion|regulation of transcription, DNA-dependent	cytoplasm|nuclear chromatin	DNA binding|protein binding|zinc ion binding			ovary(3)	3	Lung SC(34;0.00471)|Ovarian(49;0.00672)|Hepatocellular(266;0.0997)|all_hematologic(923;0.127)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.112)|LUSC - Lung squamous cell carcinoma(543;0.181)			GCCTGGTTTCAAGCCCTCCAG	0.453000													46	274					0	0	0.003610	0	0
FLG	2312	broad.mit.edu	37	1	152275656	152275656	+	Silent	SNP	G	A	A	rs147335121		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:152275656G>A	uc001ezu.1	-	3	11742	c.11706C>T	c.(11704-11706)CCC>CCT	p.P3902P		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3902	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GAGAGGATCCGGGGTGTCTGG	0.517000									Ichthyosis				21	17					0	0	0.001523	0	0
FLG	2312	broad.mit.edu	37	1	152277508	152277508	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:152277508C>T	uc001ezu.1	-	3	9890	c.9854G>A	c.(9853-9855)GGA>GAA	p.G3285E		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3285	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TGCAGCCTGTCCACCAGAGGA	0.587000									Ichthyosis				108	153					0	0	0.003610	0	0
KCNN3	3782	broad.mit.edu	37	1	154794621	154794621	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:154794621G>A	uc001ffp.2	-	2	1287	c.973C>T	c.(973-975)CTG>TTG	p.L325L	KCNN3_uc001ffo.2_Silent_p.L20L|KCNN3_uc009wox.1_Silent_p.L325L	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	330	Helical; Name=Segment S2; (Potential).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			ATGGTGGACAGACTGATAAGG	0.522000													34	33					0	0	0.003610	0	0
FAM189B	10712	broad.mit.edu	37	1	155217900	155217900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:155217900G>A	uc001fjm.2	-	11	2380	c.1774C>T	c.(1774-1776)CTC>TTC	p.L592F	RAG1AP1_uc010pey.1_Intron|FAM189B_uc009wql.2_Missense_Mutation_p.L394F|FAM189B_uc001fjn.2_Missense_Mutation_p.L496F|FAM189B_uc001fjo.2_Missense_Mutation_p.L574F|FAM189B_uc001fjp.2_RNA	NM_006589	NP_006580	P81408	F189B_HUMAN	hypothetical protein LOC10712 isoform a	592						integral to membrane	WW domain binding			ovary(1)|breast(1)	2						GATATCTGGAGGAAACGAGTG	0.602000													21	20					0	0	0.001882	0	0
CD1C	911	broad.mit.edu	37	1	158261127	158261127	+	Missense_Mutation	SNP	C	T	T	rs145638725		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:158261127C>T	uc001fru.2	+	2	557	c.265C>T	c.(265-267)CGT>TGT	p.R89C	CD1C_uc001frv.2_5'Flank	NM_001765	NP_001756	P29017	CD1C_HUMAN	CD1C antigen precursor	89	Extracellular (Potential).				antigen processing and presentation|T cell activation involved in immune response	endosome membrane|integral to plasma membrane	endogenous lipid antigen binding|exogenous lipid antigen binding|glycolipid binding|lipopeptide binding	p.R89C(1)		ovary(2)|skin(1)|pancreas(1)	4	all_hematologic(112;0.0378)					GTTGTTATTTCGTTTCTACCT	0.398000													44	2					0	0	0.003610	0	0
OR6K2	81448	broad.mit.edu	37	1	158670295	158670295	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:158670295G>A	uc001fsu.1	-	1	148	c.148C>T	c.(148-150)CAG>TAG	p.Q50*		NM_001005279	NP_001005279	Q8NGY2	OR6K2_HUMAN	olfactory receptor, family 6, subfamily K,	50	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					GTATTCAACTGGACCACTGTG	0.433000													11	17					0	0	0.000673	0	0
ATP1A4	480	broad.mit.edu	37	1	160122976	160122976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:160122976G>A	uc001fve.3	+	2	648	c.169G>A	c.(169-171)GAA>AAA	p.E57K	ATP1A4_uc001fvf.3_RNA	NM_144699	NP_653300	Q13733	AT1A4_HUMAN	Na+/K+ -ATPase alpha 4 subunit isoform 1	57	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport|regulation of cellular pH|sperm motility	sodium:potassium-exchanging ATPase complex	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(2)|skin(2)	4	all_cancers(52;2.56e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)			ATTAACCTTGGAAGAGCTGAG	0.408000													17	15					0	0	0.006122	0	0
ITLN2	142683	broad.mit.edu	37	1	160917755	160917755	+	Silent	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:160917755A>G	uc001fxd.2	-	7	847	c.789T>C	c.(787-789)TGT>TGC	p.C263C	ITLN2_uc009wts.2_Silent_p.C262C|ITLN2_uc010pju.1_Silent_p.C180C	NM_080878	NP_543154	Q8WWU7	ITLN2_HUMAN	intelectin 2 precursor	263	Fibrinogen C-terminal.				signal transduction	extracellular region	receptor binding|sugar binding			ovary(1)	1	all_cancers(52;2.99e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00275)			TTATCCCAGCACAAAGGGCGT	0.388000													15	34					0	0	0.006122	0	0
FCGR3A	2214	broad.mit.edu	37	1	161514504	161514504	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:161514504G>A	uc001gat.3	-	5	701	c.564C>T	c.(562-564)ATC>ATT	p.I188I	FCGR3A_uc001gar.2_Silent_p.I224I|FCGR3A_uc001gas.2_Silent_p.I223I|FCGR3A_uc009wuh.2_Silent_p.I187I|FCGR3A_uc009wui.2_Silent_p.I188I	NM_001127595	NP_001121067	P08637	FCG3A_HUMAN	Fc fragment of IgG, low affinity IIIa, receptor	188	Extracellular (Potential).|Ig-like C2-type 2.				immune response|regulation of immune response	extracellular region|integral to membrane|plasma membrane	IgG binding|receptor activity			ovary(1)	1	all_cancers(52;4.89e-16)|all_hematologic(112;0.0207)		BRCA - Breast invasive adenocarcinoma(70;0.00376)		Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	GAGTGATGGTGATGTTCACAG	0.507000													11	12					0	0	0.004990	0	0
DUSP27	92235	broad.mit.edu	37	1	167095746	167095746	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:167095746C>T	uc001geb.1	+	5	1378	c.1378C>T	c.(1378-1380)CCG>TCG	p.P460S		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	460					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						GCTGAACCGCCCGGACCACGG	0.682000													7	12					0	0	0.004482	0	0
DUSP27	92235	broad.mit.edu	37	1	167097079	167097079	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:167097079C>T	uc001geb.1	+	5	2711	c.2711C>T	c.(2710-2712)TCC>TTC	p.S904F		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	904	Ser-rich.				protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CGCAGTAATTCCCAGAAACCT	0.483000													37	32					0	0	0.001951	0	0
ADCY10	55811	broad.mit.edu	37	1	167798661	167798661	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:167798661C>T	uc001ger.2	-	26	3892	c.3594G>A	c.(3592-3594)GGG>GGA	p.G1198G	ADCY10_uc009wvj.2_RNA|ADCY10_uc009wvk.2_Silent_p.G1106G|ADCY10_uc010plj.1_Silent_p.G1045G	NM_018417	NP_060887	Q96PN6	ADCYA_HUMAN	adenylate cyclase 10	1198					intracellular signal transduction|spermatogenesis	cytoskeleton|cytosol|perinuclear region of cytoplasm|plasma membrane|soluble fraction	adenylate cyclase activity|ATP binding|magnesium ion binding			central_nervous_system(2)|ovary(1)	3						GCCTCTTCTTCCTATTGGATA	0.408000													20	48					0	0	0.003954	0	0
F5	2153	broad.mit.edu	37	1	169512080	169512080	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:169512080C>A	uc001ggg.1	-	13	2393	c.2248G>T	c.(2248-2250)GAG>TAG	p.E750*		NM_000130	NP_000121	P12259	FA5_HUMAN	coagulation factor V precursor	750	B.				cell adhesion|platelet activation|platelet degranulation	plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	all_hematologic(923;0.208)				Drotrecogin alfa(DB00055)	AGATTGAACTCTTCTTCTTCC	0.393000													17	25					6.49762e-13	1.42028e-12	0.006122	1	0
C1orf129	80133	broad.mit.edu	37	1	170928613	170928613	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:170928613C>T	uc001ghg.2	+	5	293	c.163C>T	c.(163-165)CCC>TCC	p.P55S	C1orf129_uc009wvy.2_5'UTR|C1orf129_uc010plz.1_Missense_Mutation_p.P55S	NM_025063	NP_079339	Q5TGP6	CA129_HUMAN	hypothetical protein LOC80133 isoform 2	55							binding			pancreas(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CTTTGTGGATCCCTTACTGCA	0.313000													26	40					0	0	0.001786	0	0
FMO1	2326	broad.mit.edu	37	1	171247897	171247897	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:171247897C>T	uc009wvz.2	+	5	650	c.514C>T	c.(514-516)CAT>TAT	p.H172Y	FMO1_uc010pme.1_Missense_Mutation_p.H109Y|FMO1_uc001ghl.2_Missense_Mutation_p.H172Y|FMO1_uc001ghm.2_Missense_Mutation_p.H172Y|FMO1_uc001ghn.2_Missense_Mutation_p.H172Y	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	172					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCAGTACTTTCATAGCCGGCA	0.383000													15	22					0	0	0.006122	0	0
FASLG	356	broad.mit.edu	37	1	172633494	172633494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:172633494G>A	uc001gis.2	+	3	572	c.415G>A	c.(415-417)GAA>AAA	p.E139K	FASLG_uc001git.2_Silent_p.L123L	NM_000639	NP_000630	P48023	TNFL6_HUMAN	fas ligand	139	Extracellular (Potential).				activation of caspase activity|activation of pro-apoptotic gene products|cell-cell signaling|immune response|induction of necroptosis by extracellular signals|induction of necroptosis of activated-T cells|necrotic cell death|negative regulation of angiogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|signal transduction	extracellular space|integral to plasma membrane	cytokine activity			lung(2)|breast(1)	3						TCCACCCCCTGAAAAAAAGGA	0.408000													19	19					0	0	0.001523	0	0
ANKRD45	339416	broad.mit.edu	37	1	173596225	173596225	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:173596225C>T	uc001gja.1	-	4	631	c.570G>A	c.(568-570)GGG>GGA	p.G190G		NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	206											0						TAAGGAGTTTCCCTGATCCCT	0.353000													26	30					0	0	0.001786	0	0
PAPPA2	60676	broad.mit.edu	37	1	176563858	176563858	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:176563858G>A	uc001gkz.2	+	3	2282	c.1118G>A	c.(1117-1119)GGA>GAA	p.G373E	PAPPA2_uc001gky.1_Missense_Mutation_p.G373E|PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	373					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						ACTTACGATGGACGGCACATG	0.572000													24	24					0	0	0.003330	0	0
ZNF648	127665	broad.mit.edu	37	1	182026956	182026956	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:182026956C>T	uc001goz.2	-	2	398	c.190G>A	c.(190-192)GAA>AAA	p.E64K		NM_001009992	NP_001009992	Q5T619	ZN648_HUMAN	zinc finger protein 648	64					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						TCAGGATTTTCGTGTGTTACT	0.562000													21	43					0	0	0.001523	0	0
CFH	3075	broad.mit.edu	37	1	196714956	196714956	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:196714956G>A	uc001gtj.3	+	21	3560	c.3320G>A	c.(3319-3321)GGA>GAA	p.G1107E		NM_000186	NP_000177	P08603	CFAH_HUMAN	complement factor H isoform a precursor	1107	Sushi 19.				complement activation, alternative pathway	extracellular space				skin(4)|ovary(1)|breast(1)	6						GATTCTACAGGAAAATGTGGG	0.398000													54	83					0	0	0.003610	0	0
F13B	2165	broad.mit.edu	37	1	197032004	197032004	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:197032004G>A	uc001gtt.1	-	2	292	c.248C>T	c.(247-249)CCA>CTA	p.P83L		NM_001994	NP_001985	P05160	F13B_HUMAN	coagulation factor XIII B subunit precursor	83	Sushi 1.				blood coagulation	extracellular region				upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						CCTTGGCTCTGGAGACCAGCC	0.383000													15	28					0	0	0.003163	0	0
NR5A2	2494	broad.mit.edu	37	1	200143285	200143285	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:200143285G>A	uc001gvb.2	+	8	1779	c.1573G>A	c.(1573-1575)GAT>AAT	p.D525N	NR5A2_uc001gvc.2_Missense_Mutation_p.D479N|NR5A2_uc009wzh.2_Missense_Mutation_p.D485N|NR5A2_uc010pph.1_Missense_Mutation_p.D453N	NM_205860	NP_995582	O00482	NR5A2_HUMAN	nuclear receptor subfamily 5, group A, member 2	525					embryo development|positive regulation of viral genome replication|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	lipid binding|protein binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|steroid hormone receptor activity|transcription regulatory region DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Prostate(682;0.19)					CCTGAACGGGGATGTGCCCTA	0.453000													4	11					0	0	0.000248	0	0
KIF21B	23046	broad.mit.edu	37	1	200944676	200944676	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:200944676C>T	uc001gvs.1	-	33	4882	c.4565G>A	c.(4564-4566)CGA>CAA	p.R1522Q	KIF21B_uc001gvr.1_Missense_Mutation_p.R1509Q|KIF21B_uc009wzl.1_Missense_Mutation_p.R1522Q|KIF21B_uc010ppn.1_Missense_Mutation_p.R1509Q	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	1522	WD 5.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						GCCGTTATCTCGGGAGCCACT	0.597000													21	23					0	0	0.005443	0	0
KIF21B	23046	broad.mit.edu	37	1	200977899	200977899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:200977899C>T	uc001gvs.1	-	3	762	c.445G>A	c.(445-447)GAG>AAG	p.E149K	KIF21B_uc001gvr.1_Missense_Mutation_p.E149K|KIF21B_uc009wzl.1_Missense_Mutation_p.E149K|KIF21B_uc010ppn.1_Missense_Mutation_p.E149K	NM_017596	NP_060066	O75037	KI21B_HUMAN	kinesin family member 21B	149	Kinesin-motor.				microtubule-based movement	cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(3)|skin(3)	6						CACAGTACCTCCAGAAACTGG	0.637000													18	54					0	0	0.001523	0	0
CACNA1S	779	broad.mit.edu	37	1	201016734	201016734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:201016734C>T	uc001gvv.2	-	37	4689	c.4462G>A	c.(4462-4464)GAG>AAG	p.E1488K		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	1488	Cytoplasmic (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	CTCAGCTCCTCGTTGGCCTGC	0.512000													37	40					0	0	0.006999	0	0
CACNA1S	779	broad.mit.edu	37	1	201038277	201038277	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:201038277C>T	uc001gvv.2	-	19	2765	c.2538G>A	c.(2536-2538)GAG>GAA	p.E846E		NM_000069	NP_000060	Q13698	CAC1S_HUMAN	calcium channel, voltage-dependent, L type,	846	III.|Helical; Name=S2 of repeat III; (Potential).				axon guidance	I band|T-tubule|voltage-gated calcium channel complex	high voltage-gated calcium channel activity			ovary(3)|central_nervous_system(1)|skin(1)	5					Magnesium Sulfate(DB00653)|Verapamil(DB00661)	TGAGGACAATCTCCACAGTGA	0.582000													13	27					0	0	0.003163	0	0
LAD1	3898	broad.mit.edu	37	1	201355974	201355974	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:201355974C>T	uc001gwm.2	-	3	750	c.515G>A	c.(514-516)GGG>GAG	p.G172E	LAD1_uc009wzu.1_Missense_Mutation_p.G194E	NM_005558	NP_005549	O00515	LAD1_HUMAN	ladinin 1	172						basement membrane	structural molecule activity				0						TTCTGGAACCCCTTTCTTCCT	0.582000													47	57					0	0	0.002852	0	0
PM20D1	148811	broad.mit.edu	37	1	205813963	205813963	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:205813963G>A	uc001hdj.2	-	4	597	c.552C>T	c.(550-552)TTC>TTT	p.F184F	PM20D1_uc009xbr.2_RNA	NM_152491	NP_689704	Q6GTS8	P20D1_HUMAN	peptidase M20 domain containing 1 precursor	184						extracellular region	metal ion binding|peptidase activity			skin(1)	1	Breast(84;0.201)		BRCA - Breast invasive adenocarcinoma(75;0.0252)			CCAGAGAAATGAAGAAAGATC	0.512000													27	24					0	0	0.002445	0	0
KCNH1	3756	broad.mit.edu	37	1	210970979	210970979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:210970979C>T	uc001hib.2	-	9	1956	c.1786G>A	c.(1786-1788)GAG>AAG	p.E596K	KCNH1_uc001hic.2_Missense_Mutation_p.E569K	NM_172362	NP_758872	O95259	KCNH1_HUMAN	potassium voltage-gated channel, subfamily H,	596	Cytoplasmic (Potential).|cNMP.				myoblast fusion|regulation of transcription, DNA-dependent	voltage-gated potassium channel complex	calmodulin binding|delayed rectifier potassium channel activity|two-component sensor activity			ovary(4)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.0109)|all cancers(67;0.141)|Epithelial(68;0.185)		GTCTGGAACTCCATGGCCAGT	0.617000													30	35					0	0	0.002836	0	0
FAM71A	149647	broad.mit.edu	37	1	212798417	212798417	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:212798417C>T	uc001hjk.2	+	1	602	c.198C>T	c.(196-198)GTC>GTT	p.V66V	uc010pth.1_Intron	NM_153606	NP_705834	Q8IYT1	FA71A_HUMAN	hypothetical protein LOC149647	66										skin(3)|ovary(1)|central_nervous_system(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00631)|all cancers(67;0.00981)|GBM - Glioblastoma multiforme(131;0.0715)|Epithelial(68;0.094)		ACAACCGTGTCCGTATGGTGA	0.527000													44	65					0	0	0.003610	0	0
USH2A	7399	broad.mit.edu	37	1	216040469	216040469	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:216040469C>T	uc001hku.1	-	44	9112	c.8725G>A	c.(8725-8727)GGT>AGT	p.G2909S		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2909	Extracellular (Potential).|Fibronectin type-III 15.				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		GGTGTAAAACCCACACTGTTG	0.398000										HNSCC(13;0.011)			14	16					0	0	0.004990	0	0
MOSC1	64757	broad.mit.edu	37	1	220978453	220978453	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:220978453C>T	uc001hms.2	+	5	1061	c.813C>T	c.(811-813)TCC>TCT	p.S271S	MOSC1_uc001hmt.2_Silent_p.S288S	NM_022746	NP_073583	Q5VT66	MOSC1_HUMAN	MOCO sulphurase C-terminal domain containing 1	271	MOSC.						molybdenum ion binding|oxidoreductase activity|pyridoxal phosphate binding				0				GBM - Glioblastoma multiforme(131;0.0358)		TGGCTTGTTCCAGGTAAGGTG	0.512000													44	34					0	0	0.003610	0	0
PRSS38	339501	broad.mit.edu	37	1	228033873	228033873	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:228033873C>T	uc001hrh.2	+	5	945	c.945C>T	c.(943-945)GTC>GTT	p.V315V		NM_183062	NP_898885	A1L453	PRS38_HUMAN	marapsin 2 precursor	315					proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)|pancreas(1)	2						CTCTCAGCGTCCTAATGGCCA	0.572000													34	54					0	0	0.002222	0	0
OBSCN	84033	broad.mit.edu	37	1	228509213	228509213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:228509213G>A	uc009xez.1	+	55	14715	c.14671G>A	c.(14671-14673)GAG>AAG	p.E4891K	OBSCN_uc001hsn.2_Missense_Mutation_p.E4891K	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4891	IQ.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				GGTCCGGAAGGAGATGAAGCA	0.592000													9	9					0	0	0.004482	0	0
OBSCN	84033	broad.mit.edu	37	1	228520606	228520606	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:228520606C>T	uc009xez.1	+	57	15742	c.15698C>T	c.(15697-15699)TCA>TTA	p.S5233L	OBSCN_uc001hsn.2_Missense_Mutation_p.S5233L|OBSCN_uc001hsr.1_5'Flank	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	5233					apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				ACGGAGTCCTCATCCTACTTC	0.617000													6	14					0	0	0.001984	0	0
PGBD5	79605	broad.mit.edu	37	1	230461099	230461099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:230461099C>T	uc010pwb.1	-	6	1129	c.1129G>A	c.(1129-1131)GCT>ACT	p.A377T	PGBD5_uc001htv.2_Missense_Mutation_p.A476T	NM_024554	NP_078830	Q8N414	PGBD5_HUMAN	piggyBac transposable element derived 5	377						integral to membrane				ovary(2)|central_nervous_system(1)|skin(1)	4	Breast(184;0.0397)	Prostate(94;0.167)		GBM - Glioblastoma multiforme(131;0.201)		CTCAGGTGAGCGGCAAACGCC	0.542000													12	275					0	0	0.001855	0	0
TRIM67	440730	broad.mit.edu	37	1	231335978	231335978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:231335978G>A	uc009xfn.1	+	4	1390	c.1348G>A	c.(1348-1350)GAG>AAG	p.E450K		NM_001004342	NP_001004342	Q6ZTA4	TRI67_HUMAN	tripartite motif-containing 67	450	COS.					cytoplasm|cytoskeleton	zinc ion binding			ovary(2)|breast(1)|kidney(1)	4	Breast(184;0.0871)	all_cancers(173;0.189)|Prostate(94;0.167)				GGTGATCAAGGAGAACGACCC	0.537000													46	52					0	0	0.003610	0	0
PCNXL2	80003	broad.mit.edu	37	1	233134019	233134019	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:233134019G>A	uc001hvl.2	-	32	6004	c.5769C>T	c.(5767-5769)TCC>TCT	p.S1923S	PCNXL2_uc001hvk.1_Silent_p.S575S|PCNXL2_uc001hvm.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1923						integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				TCCCTTCACAGGATGACACCC	0.587000													11	11					0	0	0.000673	0	0
KIAA1804	84451	broad.mit.edu	37	1	233514925	233514925	+	Missense_Mutation	SNP	G	A	A	rs76363344	by1000genomes	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:233514925G>A	uc001hvt.3	+	9	2434	c.2173G>A	c.(2173-2175)GGG>AGG	p.G725R	KIAA1804_uc001hvu.3_Missense_Mutation_p.G171R	NM_032435	NP_115811	Q5TCX8	M3KL4_HUMAN	mixed lineage kinase 4	725					activation of JUN kinase activity|protein autophosphorylation		ATP binding|MAP kinase kinase kinase activity|protein homodimerization activity			lung(5)|central_nervous_system(2)|skin(1)	8		all_cancers(173;0.000405)|all_epithelial(177;0.0345)|Prostate(94;0.122)				AGCTCTGTATGGGTGCACCGT	0.537000													12	25					0	0	0.001368	0	0
SLC35F3	148641	broad.mit.edu	37	1	234367487	234367487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:234367487G>A	uc001hwa.1	+	2	629	c.401G>A	c.(400-402)AGG>AAG	p.R134K	SLC35F3_uc001hvy.1_Missense_Mutation_p.R203K	NM_173508	NP_775779	Q8IY50	S35F3_HUMAN	solute carrier family 35, member F3	134					transport	integral to membrane				ovary(2)	2	Ovarian(103;0.0454)	all_cancers(173;0.145)|Prostate(94;0.0885)	OV - Ovarian serous cystadenocarcinoma(106;0.00531)			CAGCGATACAGGTAGGCGCGT	0.602000													44	49					0	0	0.002852	0	0
NID1	4811	broad.mit.edu	37	1	236205349	236205349	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:236205349G>A	uc001hxo.2	-	4	1098	c.996C>T	c.(994-996)CTC>CTT	p.L332L	NID1_uc009xgd.2_Silent_p.L332L	NM_002508	NP_002499	P14543	NID1_HUMAN	nidogen 1 precursor	332					cell-matrix adhesion	basement membrane	calcium ion binding			large_intestine(1)|pancreas(1)	2	Ovarian(103;0.0544)|Breast(184;0.23)	all_cancers(173;0.00491)|Prostate(94;0.184)|Acute lymphoblastic leukemia(190;0.229)	OV - Ovarian serous cystadenocarcinoma(106;0.00162)		Becaplermin(DB00102)|Urokinase(DB00013)	GGCGCGGGGAGAGGACGCTGG	0.622000													29	29					0	0	0.002096	0	0
ACTN2	88	broad.mit.edu	37	1	236881217	236881217	+	Silent	SNP	C	T	T	rs34403480	byFrequency	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:236881217C>T	uc001hyf.2	+	2	390	c.186C>T	c.(184-186)ATC>ATT	p.I62I	ACTN2_uc001hyg.2_5'UTR|ACTN2_uc009xgi.1_Silent_p.I62I	NM_001103	NP_001094	P35609	ACTN2_HUMAN	actinin, alpha 2	62	CH 1.|Actin-binding.				focal adhesion assembly|microspike assembly|muscle filament sliding|platelet activation|platelet degranulation|protein homotetramerization|regulation of apoptosis|synaptic transmission	actin filament|cytosol|dendritic spine|extracellular region|filopodium|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|Z disc	actin binding|calcium ion binding|FATZ 1 binding|identical protein binding|integrin binding|protein dimerization activity|structural constituent of muscle|titin binding|titin Z domain binding|ZASP binding			ovary(4)|skin(1)	5	Ovarian(103;0.0634)|Breast(184;0.221)	all_cancers(173;0.00661)|Acute lymphoblastic leukemia(190;0.109)|Prostate(94;0.174)	OV - Ovarian serous cystadenocarcinoma(106;0.00168)			TTGAGAACATCGAGGAAGACT	0.468000													11	14					0	0	0.001368	0	0
TRIM58	25893	broad.mit.edu	37	1	248039313	248039313	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:248039313G>A	uc001ido.2	+	6	1031	c.983G>A	c.(982-984)CGA>CAA	p.R328Q	OR2W3_uc001idp.1_5'UTR	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	328	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			AACCCTGAGCGATTTGACACA	0.602000													14	20					0	0	0.001855	0	0
OR2T8	343172	broad.mit.edu	37	1	248084496	248084496	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:248084496C>T	uc010pzc.1	+	1	177	c.177C>T	c.(175-177)TTC>TTT	p.F59F		NM_001005522	NP_001005522	A6NH00	OR2T8_HUMAN	olfactory receptor, family 2, subfamily T,	59	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0211)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			CCATGTACTTCCTCCTGAGCC	0.537000													47	110					0	0	0.003610	0	0
OR2L8	391190	broad.mit.edu	37	1	248112449	248112449	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:248112449G>A	uc001idt.1	+	1	290	c.290G>A	c.(289-291)GGG>GAG	p.G97E	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			ACTGGGTGTGGGATTCAGAGT	0.438000													8	95					0	0	0.000673	0	0
OR2L8	391190	broad.mit.edu	37	1	248112615	248112615	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:248112615G>A	uc001idt.1	+	1	456	c.456G>A	c.(454-456)TCG>TCA	p.S152S	OR2L13_uc001ids.2_Intron	NM_001001963	NP_001001963	Q8NGY9	OR2L8_HUMAN	olfactory receptor, family 2, subfamily L,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0152)			TCATAGGCTCGATCAATGCTT	0.443000													30	84					0	0	0.003271	0	0
OR2L3	391192	broad.mit.edu	37	1	248224273	248224273	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:248224273G>A	uc001idx.1	+	1	290	c.290G>A	c.(289-291)GGG>GAG	p.G97E	OR2L13_uc001ids.2_Intron	NM_001004687	NP_001004687	Q8NG85	OR2L3_HUMAN	olfactory receptor, family 2, subfamily L,	97	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0278)			ACTGGGTGTGGGATTCAGAGT	0.438000													35	48					0	0	0.002522	0	0
OR2L13	284521	broad.mit.edu	37	1	248263493	248263493	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:248263493C>T	uc001ids.2	+	3	1153	c.816C>T	c.(814-816)ATC>ATT	p.I272I		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	272	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			AAGACAAGATCCTGGCAGTCT	0.473000													26	30					0	0	0.004656	0	0
NEBL	10529	broad.mit.edu	37	10	21101828	21101828	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:21101828G>A	uc001iqi.2	-	24	2785	c.2388C>T	c.(2386-2388)GGC>GGT	p.G796G	NEBL_uc001iqj.2_RNA|NEBL_uc001iqk.2_Silent_p.G133G	NM_006393	NP_006384	O76041	NEBL_HUMAN	nebulette sarcomeric isoform	796	Nebulin 23.				regulation of actin filament length		actin binding|structural constituent of muscle			ovary(2)	2						CGGGAGTAAAGCCTCTCCCCT	0.448000													8	4					0	0	0.006214	0	0
ANKRD30A	91074	broad.mit.edu	37	10	37482123	37482123	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:37482123A>G	uc001iza.1	+	27	2482	c.2383A>G	c.(2383-2385)AGA>GGA	p.R795G		NM_052997	NP_443723	Q9BXX3	AN30A_HUMAN	ankyrin repeat domain 30A	851						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(7)|breast(1)|skin(1)	9						GGCTCCCTGCAGAATGAAAGT	0.269000													3	5					0	0	0.001984	0	0
RBP3	5949	broad.mit.edu	37	10	48387882	48387882	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:48387882T>G	uc001jez.2	-	1	3110	c.2996A>C	c.(2995-2997)AAG>ACG	p.K999T		NM_002900	NP_002891	P10745	RET3_HUMAN	retinol-binding protein 3 precursor	999	4 X approximate tandem repeats.|4.				lipid metabolic process|proteolysis|transport|visual perception	interphotoreceptor matrix	retinal binding|serine-type peptidase activity			large_intestine(1)|central_nervous_system(1)	2					Vitamin A(DB00162)	ATGGGCTGCCTTCAGGTGTGG	0.612000													66	9					0	0	0.003610	0	0
C10orf71	118461	broad.mit.edu	37	10	50531118	50531118	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:50531118C>T	uc010qgp.1	+	3	867	c.528C>T	c.(526-528)TTC>TTT	p.F176F		NM_199459	NP_955629	Q711Q0	CJ071_HUMAN	hypothetical protein LOC118461 isoform 2	176											0						CTCCCAAATTCGCTCCTCTTC	0.502000													16	6					0	0	0.006122	0	0
ANK3	288	broad.mit.edu	37	10	61802497	61802497	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:61802497C>T	uc001jky.2	-	43	13278	c.13086G>A	c.(13084-13086)GTG>GTA	p.V4362V	ANK3_uc001jkw.2_Silent_p.V986V|ANK3_uc009xpa.2_Silent_p.V985V|ANK3_uc001jkx.2_Silent_p.V1029V|ANK3_uc010qih.1_Silent_p.V1853V|ANK3_uc001jkz.3_Silent_p.V1846V|ANK3_uc001jkv.2_Silent_p.V385V	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	4362					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TCTTCGTTTTCACCTTAAAAC	0.423000													47	7					0	0	0.003610	0	0
ANK3	288	broad.mit.edu	37	10	61932940	61932940	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:61932940C>T	uc001jky.2	-	19	2381	c.2189G>A	c.(2188-2190)GGA>GAA	p.G730E	ANK3_uc001jkx.2_5'Flank|ANK3_uc010qih.1_Missense_Mutation_p.G713E|ANK3_uc001jkz.3_Missense_Mutation_p.G724E|ANK3_uc001jlb.1_Missense_Mutation_p.G259E|ANK3_uc001jlc.1_Missense_Mutation_p.G391E	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	730	ANK 21.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						TGGTGTGTATCCCATCTGtaa	0.328000													14	1					0	0	0.002450	0	0
ANK3	288	broad.mit.edu	37	10	62021631	62021631	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:62021631C>T	uc001jky.2	-	7	976	c.784G>A	c.(784-786)GAT>AAT	p.D262N	ANK3_uc010qih.1_Missense_Mutation_p.D245N|ANK3_uc001jkz.3_Missense_Mutation_p.D256N|ANK3_uc001jlb.1_5'UTR	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	262	ANK 6.				establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						GCGGTGAAATCCACAGCAGCC	0.433000													18	2					0	0	0.002299	0	0
COL13A1	1305	broad.mit.edu	37	10	71640273	71640273	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:71640273C>T	uc001jpr.1	+	5	986	c.450C>T	c.(448-450)GAC>GAT	p.D150D	COL13A1_uc001jqj.1_Silent_p.D150D|COL13A1_uc001jps.1_Intron|COL13A1_uc001jpt.1_Silent_p.D150D|COL13A1_uc001jpu.1_Silent_p.D150D|COL13A1_uc001jpv.1_Silent_p.D150D|COL13A1_uc001jpx.1_Silent_p.D150D|COL13A1_uc001jpw.1_Silent_p.D138D|COL13A1_uc001jpy.1_Silent_p.D129D|COL13A1_uc001jpz.1_Intron|COL13A1_uc001jqa.1_Intron|COL13A1_uc001jqc.1_Silent_p.D150D|COL13A1_uc001jqb.1_Intron|COL13A1_uc001jql.2_Silent_p.D150D|COL13A1_uc001jqd.1_Silent_p.D138D|COL13A1_uc001jqe.1_Intron|COL13A1_uc001jqf.1_Silent_p.D150D|COL13A1_uc001jqg.1_Silent_p.D150D|COL13A1_uc001jqh.1_Silent_p.D150D|COL13A1_uc001jqi.1_Silent_p.D150D|COL13A1_uc010qjf.1_Intron|COL13A1_uc001jqk.1_Silent_p.D10D	NM_005203	NP_005194	Q5TAT6	CODA1_HUMAN	alpha 1 type XIII collagen isoform 1	150	Extracellular (Potential).|Triple-helical region 1 (COL1).				cell differentiation|cell-cell adhesion|cell-matrix adhesion|endochondral ossification|morphogenesis of a branching structure	collagen type XIII|integral to membrane	extracellular matrix structural constituent|heparin binding|protein binding			ovary(1)	1					Atorvastatin(DB01076)|Simvastatin(DB00641)	CCCCCGGAGACGCTGGGCTGT	0.363000													18	0					0	0	0.002299	0	0
SPOCK2	9806	broad.mit.edu	37	10	73826742	73826742	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:73826742G>A	uc001jso.1	-	8	1291	c.846C>T	c.(844-846)ATC>ATT	p.I282I	SPOCK2_uc001jsp.2_Silent_p.I282I	NM_014767	NP_055582	Q92563	TICN2_HUMAN	sparc/osteonectin, cwcv and kazal-like domains	282					extracellular matrix organization|regulation of cell differentiation|signal transduction|synapse assembly	proteinaceous extracellular matrix	calcium ion binding				0						AGAAGGGACGGATGCAGACCT	0.587000													76	10					0	0	0.003610	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75407723	75407723	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:75407723C>T	uc001jut.3	-	4	1839	c.1687G>A	c.(1687-1689)GGA>AGA	p.G563R	SYNPO2L_uc001jus.3_Missense_Mutation_p.G339R	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	563	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					TCTGGAGCTCCACCTGGGGTG	0.672000													13	2					0	0	0.001855	0	0
Unknown	0	broad.mit.edu	37	10	79540279	79540279	+	RNA	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:79540279G>A	uc001jyt.2	+	1		c.54G>A			uc010qlk.1_5'Flank|uc001jyu.1_5'Flank|uc001jyv.2_5'Flank|uc001jyw.1_5'Flank|uc001jyx.2_5'Flank|uc001jyz.2_5'Flank|uc001jza.2_5'Flank|uc001jzb.2_5'Flank|uc001jze.1_5'Flank|uc010qll.1_5'Flank|uc001jzf.1_5'Flank|uc001jzg.2_5'Flank|uc010qlm.1_5'Flank|uc001jzh.2_5'Flank					DQ596613																		CTTCTGAATGGACCCTTTGTC	0.567000													21	2					0	0	0.003330	0	0
CYP26A1	1592	broad.mit.edu	37	10	94836819	94836819	+	Silent	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:94836819C>A	uc001kil.2	+	7	1297	c.1252C>A	c.(1252-1254)CGA>AGA	p.R418R	CYP26A1_uc001kik.1_Silent_p.R349R|CYP26A1_uc001kim.1_Silent_p.R316R	NM_000783	NP_000774	O43174	CP26A_HUMAN	cytochrome P450, family 26, subfamily A,	418					negative regulation of retinoic acid receptor signaling pathway|retinoic acid catabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	electron carrier activity|heme binding|oxygen binding|retinoic acid 4-hydroxylase activity|retinoic acid binding			upper_aerodigestive_tract(1)|ovary(1)|breast(1)	3		Colorectal(252;0.122)				TAATCCTGACCGATTCATGCT	0.453000													5	69					8.12818e-05	0.00017589	0.001984	1	0
CRTAC1	55118	broad.mit.edu	37	10	99696013	99696013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:99696013C>T	uc001kou.1	-	3	691	c.335G>A	c.(334-336)GGG>GAG	p.G112E	CRTAC1_uc001kov.2_Missense_Mutation_p.G101E|CRTAC1_uc001kot.1_5'UTR	NM_018058	NP_060528	Q9NQ79	CRAC1_HUMAN	cartilage acidic protein 1 precursor	112	FG-GAP 2; atypical.					proteinaceous extracellular matrix	calcium ion binding			ovary(4)|pancreas(1)	5		Colorectal(252;0.24)		Epithelial(162;2.18e-10)|all cancers(201;3.27e-09)		GATGGCGTTCCCCTGCCGGTC	0.637000													23	4					0	0	0.002780	0	0
SCD	6319	broad.mit.edu	37	10	102108102	102108102	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:102108102G>A	uc001kqy.2	+	2	799	c.309G>A	c.(307-309)TGG>TGA	p.W103*		NM_005063	NP_005054	O00767	ACOD_HUMAN	stearoyl-CoA desaturase 1	103	Helical; (Potential).				fatty acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	iron ion binding|stearoyl-CoA 9-desaturase activity				0		Colorectal(252;0.0323)		Epithelial(162;1.97e-10)|all cancers(201;1.73e-08)		CCTGGCTTTGGGGTAAGCAGC	0.502000													84	8					0	0	0.003610	0	0
PSD	5662	broad.mit.edu	37	10	104175863	104175863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:104175863G>A	uc001kvg.1	-	3	1195	c.668C>T	c.(667-669)TCC>TTC	p.S223F	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.S223F	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	223					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		CCGGGGGGAGGACCAGGTATC	0.428000													12	0					0	0	0.002450	0	0
PRLHR	2834	broad.mit.edu	37	10	120354745	120354745	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:120354745C>T	uc001ldp.1	-	2	151	c.12G>A	c.(10-12)TCG>TCA	p.S4S		NM_004248	NP_004239	P49683	PRLHR_HUMAN	G protein-coupled receptor 10	4	Extracellular (Potential).				female pregnancy	integral to plasma membrane	neuropeptide Y receptor activity				0		Colorectal(252;0.0429)|Lung NSC(174;0.142)|all_lung(145;0.175)		all cancers(201;0.0166)		CCCGAGTGGTCGATGAGGCCA	0.632000													17	33					0	0	0.006122	0	0
TACC2	10579	broad.mit.edu	37	10	123843207	123843207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:123843207G>A	uc001lfv.2	+	4	1552	c.1192G>A	c.(1192-1194)GAA>AAA	p.E398K	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.E398K|TACC2_uc010qtv.1_Missense_Mutation_p.E398K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	398						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CGGCCAGCCCGAAGGGGGTTT	0.587000													47	9					0	0	0.003610	0	0
TACC2	10579	broad.mit.edu	37	10	124008655	124008655	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:124008655G>A	uc001lfv.2	+	21	9004	c.8644G>A	c.(8644-8646)GAG>AAG	p.E2882K	TACC2_uc001lfw.2_Missense_Mutation_p.E1028K|TACC2_uc009xzx.2_Missense_Mutation_p.E2760K|TACC2_uc010qtv.1_Missense_Mutation_p.E2809K|TACC2_uc001lfx.2_Missense_Mutation_p.E509K|TACC2_uc001lfy.2_Missense_Mutation_p.E505K|TACC2_uc001lfz.2_Missense_Mutation_p.E960K|TACC2_uc001lga.2_Missense_Mutation_p.E930K|TACC2_uc009xzy.2_Missense_Mutation_p.E942K|TACC2_uc001lgb.2_Missense_Mutation_p.E840K	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	2882	Potential.					microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				GGTGCACGCGGAGGAGAAACT	0.607000													21	1					0	0	0.001882	0	0
DMBT1	1755	broad.mit.edu	37	10	124380647	124380647	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr10:124380647C>T	uc001lgk.1	+	41	5078	c.4972C>T	c.(4972-4974)CGA>TGA	p.R1658*	DMBT1_uc001lgl.1_Nonsense_Mutation_p.R1648*|DMBT1_uc001lgm.1_Nonsense_Mutation_p.R1030*|DMBT1_uc009xzz.1_Nonsense_Mutation_p.R1658*|DMBT1_uc010qtx.1_Intron|DMBT1_uc009yab.1_Nonsense_Mutation_p.R361*|DMBT1_uc009yac.1_5'UTR	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1658	SRCR 13.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				GGTCCTGTATCGAGGCTCCTG	0.592000													183	23					0	0	0.003610	0	0
MUC2	4583	broad.mit.edu	37	11	1093576	1093576	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:1093576G>A	uc001lsx.1	+	31	12508	c.12481G>A	c.(12481-12483)GTG>ATG	p.V4161M		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4161						inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	cacaactacGGTGACCGCAAC	0.313000													4	6					0	0	0.000248	0	0
H19	283120	broad.mit.edu	37	11	2017361	2017361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:2017361C>T	uc001lvc.1	-	3	1510	c.892G>A	c.(892-894)GAG>AAG	p.E298K	H19_uc001luz.1_RNA|H19_uc001lva.3_RNA|H19_uc001lvd.2_RNA|H19_uc001lve.2_RNA|H19_uc001lvb.1_RNA					SubName: Full=cDNA FLJ32212 fis, clone PLACE6003399, weakly similar to SPIDROIN 1;												0						TGTGCCGACTCCGTGGAGGAA	0.617000									Beckwith-Wiedemann_syndrome				7	6					0	0	0.004482	0	0
TRPM5	29850	broad.mit.edu	37	11	2433482	2433482	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:2433482C>T	uc001lwm.3	-	16	2366	c.2357G>A	c.(2356-2358)GGC>GAC	p.G786D	TRPM5_uc010qxl.1_Missense_Mutation_p.G786D|TRPM5_uc009ydn.2_Missense_Mutation_p.G788D	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	786	Cytoplasmic (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGTGAAGAAGCCCTGGGAGGG	0.567000													64	103					0	0	0.003610	0	0
RRM1	6240	broad.mit.edu	37	11	4156462	4156462	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:4156462G>A	uc001lyw.3	+	18	2471	c.2152G>A	c.(2152-2154)GGC>AGC	p.G718S	RRM1_uc009yej.2_RNA|RRM1_uc009yei.2_Missense_Mutation_p.G678S|RRM1_uc010qyc.1_Missense_Mutation_p.G621S|RRM1_uc010qyd.1_Missense_Mutation_p.G380S	NM_001033	NP_001024	P23921	RIR1_HUMAN	ribonucleoside-diphosphate reductase M1 chain	718					deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion	cytosol|nucleoplasm|ribonucleoside-diphosphate reductase complex	ATP binding|ribonucleoside-diphosphate reductase activity			skin(1)	1		Medulloblastoma(188;0.0025)|Breast(177;0.00502)|all_neural(188;0.0227)		BRCA - Breast invasive adenocarcinoma(625;0.0848)|LUSC - Lung squamous cell carcinoma(625;0.205)	Clofarabine(DB00631)|Fludarabine(DB01073)|Gemcitabine(DB00441)|Hydroxyurea(DB01005)	GCCTAACTATGGCAAACTCAC	0.423000													32	36					0	0	0.003755	0	0
OR51D1	390038	broad.mit.edu	37	11	4661965	4661965	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:4661965C>T	uc010qyk.1	+	1	945	c.945C>T	c.(943-945)GTC>GTT	p.V315V		NM_001004751	NP_001004751	Q8NGF3	O51D1_HUMAN	olfactory receptor, family 51, subfamily D,	315	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;2.74e-13)|BRCA - Breast invasive adenocarcinoma(625;0.00435)|GBM - Glioblastoma multiforme(2;0.0841)|LUSC - Lung squamous cell carcinoma(625;0.19)		GTTCAAGGGTCCTCTGTATGT	0.468000													18	4					0	0	0.007413	0	0
OR51G2	81282	broad.mit.edu	37	11	4936743	4936743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:4936743G>A	uc001lzr.1	-	1	151	c.151C>T	c.(151-153)CTT>TTT	p.L51F		NM_001005238	NP_001005238	Q8NGK0	O51G2_HUMAN	olfactory receptor, family 51, subfamily G,	51	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ATGATAAAAAGAATTGTGCAG	0.512000													4	3					0	0	0.000248	0	0
OR52N4	390072	broad.mit.edu	37	11	5776254	5776254	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:5776254G>A	uc001mbu.2	+	1	332	c.284G>A	c.(283-285)GGA>GAA	p.G95E	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001005175	NP_001005175	Q8NGI2	O52N4_HUMAN	olfactory receptor, family 52, subfamily N,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;1.87e-10)|LUSC - Lung squamous cell carcinoma(625;0.114)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.197)		AAGGACATTGGATTTGATGAA	0.473000													5	2					0	0	0.000602	0	0
RIC3	79608	broad.mit.edu	37	11	8159847	8159847	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:8159847G>A	uc001mgd.2	-	3	453	c.399C>T	c.(397-399)GCC>GCT	p.A133A	RIC3_uc001mgb.2_5'UTR|RIC3_uc001mgc.2_Silent_p.A133A|RIC3_uc001mge.2_Intron|RIC3_uc010rbl.1_Silent_p.A83A|RIC3_uc010rbm.1_Silent_p.A133A|RIC3_uc009yfm.2_Silent_p.A133A|RIC3_uc009yfn.2_Intron	NM_024557	NP_078833	Q7Z5B4	RIC3_HUMAN	resistance to inhibitors of cholinesterase 3	133	Cytoplasmic (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				large_intestine(1)|ovary(1)|pancreas(1)	3				Epithelial(150;2.89e-07)|BRCA - Breast invasive adenocarcinoma(625;0.204)		TTCCAGGCATGGCAGTATAGC	0.448000													61	78					0	0	0.003610	0	0
SBF2	81846	broad.mit.edu	37	11	9989952	9989952	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:9989952G>A	uc001mib.2	-	14	1674	c.1536C>T	c.(1534-1536)AAC>AAT	p.N512N	SBF2_uc001mif.3_Silent_p.N268N|SBF2_uc001mih.3_Silent_p.N41N	NM_030962	NP_112224	Q86WG5	MTMRD_HUMAN	SET binding factor 2	512					myelination	cytoplasm|membrane	phosphatase activity|protein binding			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3				all cancers(16;2.88e-11)|Epithelial(150;3.61e-10)|BRCA - Breast invasive adenocarcinoma(625;0.00887)		GTGCATTCTGGTTCTTAGCAA	0.423000													77	84					0	0	0.003610	0	0
AMPD3	272	broad.mit.edu	37	11	10527309	10527309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:10527309G>A	uc001mio.1	+	15	2517	c.2182G>A	c.(2182-2184)GAT>AAT	p.D728N	AMPD3_uc010rbz.1_Missense_Mutation_p.D569N|AMPD3_uc001min.1_Missense_Mutation_p.D737N|AMPD3_uc009yfw.1_RNA|AMPD3_uc009yfz.2_RNA|AMPD3_uc001mip.1_Missense_Mutation_p.D735N|AMPD3_uc009yfy.2_Missense_Mutation_p.D728N	NM_001025389	NP_001020560	Q01432	AMPD3_HUMAN	adenosine monophosphate deaminase 3 isoform 1B	728					AMP catabolic process|purine base metabolic process|purine ribonucleoside monophosphate biosynthetic process|purine-containing compound salvage	cytosol	AMP deaminase activity|metal ion binding			large_intestine(1)|ovary(1)	2				all cancers(16;1.14e-08)|Epithelial(150;2.83e-08)|BRCA - Breast invasive adenocarcinoma(625;0.0291)		TGAAGGAAATGATATTCGAAA	0.373000													29	41					0	0	0.001786	0	0
SOX6	55553	broad.mit.edu	37	11	16036519	16036520	+	Missense_Mutation	DNP	GA	AC	AC			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:16036519_16036520GA>AC	uc001mme.2	-	13	1772_1773	c.1739_1740TC>GT	c.(1738-1740)GTC>GGT	p.V580G	SOX6_uc001mmd.2_Missense_Mutation_p.V543G|SOX6_uc001mmf.2_Missense_Mutation_p.V540G|SOX6_uc001mmg.2_Missense_Mutation_p.V567G	NM_001145819	NP_001139291	P35712	SOX6_HUMAN	SRY (sex determining region Y)-box 6 isoform 4	567					muscle organ development	nucleus	sequence-specific DNA binding transcription factor activity			ovary(3)	3						TAAGGTCGATGACACCTGGGCC	0.470000													4	4					0	0	0.004672	0	0
ABCC8	6833	broad.mit.edu	37	11	17482058	17482058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:17482058C>T	uc001mnc.2	-	6	1114	c.988G>A	c.(988-990)GAG>AAG	p.E330K	ABCC8_uc010rcy.1_Missense_Mutation_p.E329K	NM_000352	NP_000343	Q09428	ABCC8_HUMAN	ATP-binding cassette, sub-family C, member 8	330	Helical; Name=6; (By similarity).|ABC transmembrane type-1 1.				carbohydrate metabolic process|energy reserve metabolic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium ion transmembrane transporter activity|sulfonylurea receptor activity			ovary(1)	1				READ - Rectum adenocarcinoma(2;0.0325)|Colorectal(2;0.1)	Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)|Gliclazide(DB01120)|Mitiglinide(DB01252)|Nateglinide(DB00731)|Repaglinide(DB00912)	ACGTCGTTCTCCTTCCCAAGG	0.592000													109	129					0	0	0.003610	0	0
E2F8	79733	broad.mit.edu	37	11	19251216	19251216	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:19251216C>A	uc001mpm.2	-	10	2200	c.1678G>T	c.(1678-1680)GAT>TAT	p.D560Y	E2F8_uc009yhv.2_Intron|E2F8_uc001mpn.3_Missense_Mutation_p.D560Y	NM_024680	NP_078956	A0AVK6	E2F8_HUMAN	E2F family member 8	560					cell cycle	transcription factor complex	DNA binding|sequence-specific DNA binding transcription factor activity			skin(1)	1						GTGGTGGCATCTGTGGAGTCT	0.582000													74	69					9.78802e-22	2.15312e-21	0.003610	1	0
SLC6A5	9152	broad.mit.edu	37	11	20629177	20629177	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:20629177G>A	uc001mqd.2	+	5	1237	c.964G>A	c.(964-966)GAT>AAT	p.D322N	SLC6A5_uc009yic.2_Missense_Mutation_p.D87N	NM_004211	NP_004202	Q9Y345	SC6A5_HUMAN	solute carrier family 6 (neurotransmitter	322	Extracellular (Potential).				synaptic transmission	integral to membrane|plasma membrane	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity			ovary(2)|breast(1)|skin(1)	4					Glycine(DB00145)	AGAATGCAAAGATAAAACCAA	0.323000													58	49					0	0	0.003610	0	0
MUC15	143662	broad.mit.edu	37	11	26582726	26582726	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:26582726C>T	uc001mqx.2	-	4	1157	c.891G>A	c.(889-891)GGG>GGA	p.G297G	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Silent_p.G324G|MUC15_uc001mqy.2_Silent_p.G274G	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	297	Cytoplasmic (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AGCTAGAATTCCCAAAACTCA	0.383000													11	6					0	0	0.001368	0	0
KCNA4	3739	broad.mit.edu	37	11	30034137	30034137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:30034137C>T	uc001msk.2	-	2	1241	c.89G>A	c.(88-90)CGG>CAG	p.R30Q		NM_002233	NP_002224	P22459	KCNA4_HUMAN	potassium voltage-gated channel, shaker-related	30						voltage-gated potassium channel complex	potassium ion binding|protein binding|voltage-gated potassium channel activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						AAGCCTCTCCCGCTCCCGGGC	0.637000													32	71					0	0	0.006230	0	0
CAPRIN1	4076	broad.mit.edu	37	11	34118216	34118216	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:34118216C>T	uc001mvh.1	+	16	2085	c.1896C>T	c.(1894-1896)TTC>TTT	p.F632F	CAPRIN1_uc001mvg.2_Silent_p.F632F|CAPRIN1_uc001mvi.2_Silent_p.F632F|CAPRIN1_uc001mvj.1_Silent_p.F551F	NM_005898	NP_005889	Q14444	CAPR1_HUMAN	membrane component chromosome 11 surface marker	632					negative regulation of translation|positive regulation of dendrite morphogenesis|positive regulation of dendritic spine morphogenesis	cytoplasmic mRNA processing body|cytosol|dendrite|integral to plasma membrane|stress granule	protein binding|RNA binding			ovary(1)	1		Acute lymphoblastic leukemia(5;0.00045)|all_hematologic(20;0.0016)				CCAATGGATTCAGAGGTAAAA	0.403000													15	24					0	0	0.003163	0	0
OR4X2	119764	broad.mit.edu	37	11	48266760	48266760	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:48266760C>T	uc001ngs.1	+	1	105	c.105C>T	c.(103-105)TTC>TTT	p.F35F		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	35	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGGGGAATTTCCTCATTGTGC	0.473000													18	19					0	0	0.006122	0	0
OR4X2	119764	broad.mit.edu	37	11	48267238	48267238	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:48267238G>A	uc001ngs.1	+	1	583	c.583G>A	c.(583-585)GGA>AGA	p.G195R		NM_001004727	NP_001004727	Q8NGF9	OR4X2_HUMAN	olfactory receptor, family 4, subfamily X,	195	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TGTTGCCAATGGAGGCACCCT	0.498000													25	20					0	0	0.003954	0	0
OR5L2	26338	broad.mit.edu	37	11	55594865	55594865	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:55594865C>T	uc001nhy.1	+	1	171	c.171C>T	c.(169-171)ACC>ACT	p.T57T		NM_001004739	NP_001004739	Q8NGL0	OR5L2_HUMAN	olfactory receptor, family 5, subfamily L,	57	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_epithelial(135;0.208)				GGCTCCACACCCCCGTGTACT	0.468000										HNSCC(27;0.073)			18	30					0	0	0.002299	0	0
OR5F1	338674	broad.mit.edu	37	11	55761282	55761282	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:55761282C>T	uc010riv.1	-	1	820	c.820G>A	c.(820-822)GCT>ACT	p.A274T		NM_003697	NP_003688	O95221	OR5F1_HUMAN	olfactory receptor, family 5, subfamily F,	274	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2	Esophageal squamous(21;0.00448)					AACACAGAAGCCACTTTGTCC	0.458000													18	36					0	0	0.001216	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757116	56757116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:56757116C>T	uc010rjp.1	+	1	728	c.728C>T	c.(727-729)TCC>TTC	p.S243F		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						ACATGTGCTTCCCACCTGACC	0.418000													11	17					0	0	0.000978	0	0
LRRC55	219527	broad.mit.edu	37	11	56950114	56950114	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:56950114C>T	uc001njl.1	+	1	894	c.747C>T	c.(745-747)CCC>CCT	p.P249P		NM_001005210	NP_001005210	Q6ZSA7	LRC55_HUMAN	leucine rich repeat containing 55	219	LRRCT.					integral to membrane					0						CCATGGAACCCCTGCTGAAGT	0.627000													37	52					0	0	0.007835	0	0
SERPING1	710	broad.mit.edu	37	11	57367645	57367646	+	Nonsense_Mutation	DNP	CC	GT	GT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:57367645_57367646CC>GT	uc001nkp.1	+	3	536_537	c.345_346CC>GT	c.(343-348)ACCCAG>ACGTAG	p.Q116*	SERPING1_uc001nkq.1_Nonsense_Mutation_p.Q116*|SERPING1_uc010rju.1_Nonsense_Mutation_p.Q64*|SERPING1_uc010rjv.1_Nonsense_Mutation_p.Q121*|SERPING1_uc001nkr.1_Nonsense_Mutation_p.Q116*|SERPING1_uc009ymi.1_Nonsense_Mutation_p.Q116*|SERPING1_uc009ymj.1_Nonsense_Mutation_p.Q116*|SERPING1_uc001nks.1_Intron	NM_000062	NP_000053	P05155	IC1_HUMAN	serpin peptidase inhibitor, clade G, member 1	116	7.|7 X 4 AA tandem repeats of [QE]-P-T-[TQ].		Missing (in HAE; type 2).		blood circulation|blood coagulation, intrinsic pathway|complement activation, classical pathway|innate immune response|negative regulation of complement activation, lectin pathway|platelet activation|platelet degranulation	extracellular space|platelet alpha granule lumen	protein binding|serine-type endopeptidase inhibitor activity			central_nervous_system(1)	1						attctcctacccagcccacTAC	0.238000									Hereditary_Angioedema				39	61					0	0	0.004672	0	0
OR9Q1	219956	broad.mit.edu	37	11	57947582	57947582	+	Silent	SNP	C	T	T	rs139135884	byFrequency	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:57947582C>T	uc001nmj.2	+	3	982	c.666C>T	c.(664-666)ATC>ATT	p.I222I		NM_001005212	NP_001005212	Q8NGQ5	OR9Q1_HUMAN	olfactory receptor, family 9, subfamily Q,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(21;0.222)				TGTTTATCATCGTGGCCATCA	0.512000													10	14					0	0	0.006214	0	0
OR1S1	219959	broad.mit.edu	37	11	57982533	57982533	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:57982533C>T	uc010rkc.1	+	1	317	c.317C>T	c.(316-318)TCT>TTT	p.S106F		NM_001004458	NP_001004458	Q8NH92	OR1S1_HUMAN	olfactory receptor, family 1, subfamily S,	106	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1		Breast(21;0.0589)				CAATCCATCTCTTATGAGAGC	0.423000													19	33					0	0	0.001523	0	0
MS4A6E	245802	broad.mit.edu	37	11	60105331	60105331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:60105331G>A	uc001npd.2	+	2	279	c.265G>A	c.(265-267)GAA>AAA	p.E89K		NM_139249	NP_640342	Q96DS6	M4A6E_HUMAN	membrane-spanning 4-domains, subfamily A, member	89	Extracellular (Potential).					integral to membrane	receptor activity				0						TAAGTTGGACGAAAAGGATAT	0.453000													38	39					0	0	0.007835	0	0
SLC15A3	51296	broad.mit.edu	37	11	60705425	60705425	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:60705425G>A	uc001nqn.2	-	7	1742	c.1508C>T	c.(1507-1509)TCG>TTG	p.S503L	SLC15A3_uc001nqo.2_Missense_Mutation_p.R447W	NM_016582	NP_057666	Q8IY34	S15A3_HUMAN	solute carrier family 15, member 3	503	Helical; (Potential).				oligopeptide transport|protein transport	integral to membrane|lysosomal membrane	peptide:hydrogen symporter activity				0						GCCCACCCCCGACAGGCAGAA	0.642000													19	22					0	0	0.001523	0	0
CFL1	1072	broad.mit.edu	37	11	65622828	65622828	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:65622828G>A	uc001ofs.2	-	4	714	c.480C>T	c.(478-480)TCC>TCT	p.S160S	CFL1_uc001oft.2_Silent_p.S160S|CFL1_uc001ofu.2_3'UTR	NM_005507	NP_005498	P23528	COF1_HUMAN	cofilin 1 (non-muscle)	160					actin cytoskeleton organization|anti-apoptosis|axon guidance|platelet activation|platelet degranulation|response to virus|Rho protein signal transduction	cytoplasm|cytoskeleton|nuclear matrix	actin binding				0				READ - Rectum adenocarcinoma(159;0.169)		TGCCCTCCAGGGAGATGACGG	0.622000													43	20					0	0	0.003214	0	0
SAPS3	55291	broad.mit.edu	37	11	68312380	68312380	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:68312380C>T	uc001onw.2	+	4	569	c.302C>T	c.(301-303)TCC>TTC	p.S101F	SAPS3_uc010rqb.1_Missense_Mutation_p.S10F|SAPS3_uc001onv.2_Missense_Mutation_p.S101F|SAPS3_uc001ony.3_Missense_Mutation_p.S101F|SAPS3_uc001onx.2_Missense_Mutation_p.S101F|SAPS3_uc009ysh.2_Missense_Mutation_p.S101F|SAPS3_uc001onu.2_Missense_Mutation_p.S101F|SAPS3_uc010rqc.1_Missense_Mutation_p.S10F	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	101					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			GAAGATGAATCCTTGCTAATG	0.383000													18	34					0	0	0.001523	0	0
MYO7A	4647	broad.mit.edu	37	11	76886426	76886426	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:76886426C>T	uc001oyb.2	+	18	2375	c.2103C>T	c.(2101-2103)CTC>CTT	p.L701L	MYO7A_uc010rsl.1_Silent_p.L701L|MYO7A_uc010rsm.1_Silent_p.L690L|MYO7A_uc001oyc.2_Silent_p.L701L|MYO7A_uc001oyd.2_Silent_p.L41L	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	701	Myosin head-like.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						AGGGCGACCTCCGCGGGACTT	0.443000													43	137					0	0	0.003610	0	0
MYO7A	4647	broad.mit.edu	37	11	76924905	76924905	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:76924905G>A	uc001oyb.2	+	48	6711	c.6439G>A	c.(6439-6441)GAT>AAT	p.D2147N	MYO7A_uc001oyc.2_Missense_Mutation_p.D2107N|MYO7A_uc001oye.2_RNA	NM_000260	NP_000251	Q13402	MYO7A_HUMAN	myosin VIIA isoform 1	2147	FERM 2.				actin filament-based movement|equilibrioception|lysosome organization|sensory perception of sound|visual perception	cytosol|lysosomal membrane|myosin complex|photoreceptor inner segment|photoreceptor outer segment|synapse	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|breast(1)	4						GCTCCCCCAGGATATCCTCAC	0.597000													41	52					0	0	0.002522	0	0
ME3	10873	broad.mit.edu	37	11	86158109	86158109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:86158109C>T	uc001pbz.2	-	11	1632	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K	ME3_uc001pca.2_Missense_Mutation_p.E460K|ME3_uc009yvk.2_Missense_Mutation_p.E460K	NM_001014811	NP_001014811	Q16798	MAON_HUMAN	mitochondrial malic enzyme 3 precursor	460					aerobic respiration|malate metabolic process|oxygen metabolic process|pyruvate metabolic process	mitochondrial matrix	malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|metal ion binding|NAD binding			ovary(1)	1		Acute lymphoblastic leukemia(157;4.34e-06)|all_hematologic(158;0.00252)			NADH(DB00157)	CCGCTGACCTCGGTGACCCGG	0.478000													9	20					0	0	0.000978	0	0
FAT3	120114	broad.mit.edu	37	11	92526050	92526050	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:92526050G>A	uc001pdj.3	+	8	4746	c.4729G>A	c.(4729-4731)GAA>AAA	p.E1577K		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	1577	Cadherin 15.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GTCTGTGTTTGAATCTGCTGC	0.448000										TCGA Ovarian(4;0.039)			56	118					0	0	0.003610	0	0
CNTN5	53942	broad.mit.edu	37	11	100095439	100095439	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:100095439G>A	uc001pga.2	+	16	2239	c.1900G>A	c.(1900-1902)GAT>AAT	p.D634N	CNTN5_uc009ywv.1_Missense_Mutation_p.D634N|CNTN5_uc001pfz.2_Missense_Mutation_p.D634N|CNTN5_uc001pgb.2_Missense_Mutation_p.D560N|CNTN5_uc010ruk.1_Intron	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	634	Ig-like C2-type 6.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		ATCCTCTGCAGATTTAATGAT	0.458000													20	5					0	0	0.002299	0	0
GUCY1A2	2977	broad.mit.edu	37	11	106558296	106558296	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:106558296G>A	uc001pjg.1	-	8	2568	c.2178C>T	c.(2176-2178)TTC>TTT	p.F726F	GUCY1A2_uc010rvo.1_Silent_p.F747F|GUCY1A2_uc009yxn.1_Silent_p.F757F	NM_000855	NP_000846	P33402	GCYA2_HUMAN	guanylate cyclase 1, soluble, alpha 2	726					intracellular signal transduction|platelet activation	cytoplasm	GTP binding|guanylate cyclase activity|heme binding			large_intestine(3)|lung(2)|pancreas(2)|ovary(1)	8		all_epithelial(67;3.66e-05)|Melanoma(852;0.000382)|Acute lymphoblastic leukemia(157;0.001)|all_hematologic(158;0.0017)|Breast(348;0.026)|all_neural(303;0.068)		BRCA - Breast invasive adenocarcinoma(274;8.04e-05)|Epithelial(105;0.0036)|all cancers(92;0.0476)		TCTCCCGGAGGAACATGGTGC	0.493000													14	7					0	0	0.004990	0	0
CD3D	915	broad.mit.edu	37	11	118211283	118211283	+	Silent	SNP	C	T	T	rs144504840		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:118211283C>T	uc001pss.1	-	2	218	c.81G>A	c.(79-81)GAG>GAA	p.E27E	CD3D_uc001pst.1_Silent_p.E27E	NM_000732	NP_000723	P04234	CD3D_HUMAN	CD3 antigen, delta subunit isoform A precursor	27	Extracellular (Potential).				positive thymic T cell selection|T cell costimulation|T cell receptor signaling pathway	cytoplasm|integral to membrane	protein heterodimerization activity			ovary(1)	1	all_hematologic(175;0.046)	Medulloblastoma(222;0.0425)|Breast(348;0.181)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;3.04e-05)		CCTCAAGTTCCTCTATAGGTA	0.473000													12	3					0	0	0.002450	0	0
OR10G8	219869	broad.mit.edu	37	11	123900907	123900907	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:123900907C>T	uc001pzp.1	+	1	578	c.578C>T	c.(577-579)GCC>GTC	p.A193V		NM_001004464	NP_001004464	Q8NGN5	O10G8_HUMAN	olfactory receptor, family 10, subfamily G,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		GACACCTCAGCCATAGAGACT	0.507000													20	3					0	0	0.001216	0	0
KCNJ5	3762	broad.mit.edu	37	11	128786602	128786602	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:128786602C>T	uc001qet.2	+	3	1550	c.1236C>T	c.(1234-1236)TCC>TCT	p.S412S	KCNJ5_uc009zck.2_Silent_p.S412S|KCNJ5_uc001qew.2_Silent_p.S412S	NM_000890	NP_000881	P48544	IRK5_HUMAN	potassium inwardly-rectifying channel J5	412	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			skin(1)	1	all_hematologic(175;0.0641)	Lung NSC(97;0.00038)|all_lung(97;0.000817)|Breast(109;0.00123)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0059)|LUSC - Lung squamous cell carcinoma(976;0.021)|Lung(977;0.0215)	Glibenclamide(DB01016)	TGGGTGGGTCCAGGGAGGCCA	0.652000													5	1					0	0	0.000602	0	0
BARX2	8538	broad.mit.edu	37	11	129306826	129306826	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:129306826C>T	uc001qfc.3	+	2	418	c.368C>T	c.(367-369)ACG>ATG	p.T123M		NM_003658	NP_003649	Q9UMQ3	BARX2_HUMAN	BarH-like homeobox 2	123											0	all_hematologic(175;0.0749)	Lung NSC(97;0.000383)|all_lung(97;0.000824)|Breast(109;0.000962)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.00929)|Lung(977;0.0245)|LUSC - Lung squamous cell carcinoma(976;0.0253)		GAGTCAGAGACGGAACAGCCC	0.657000													8	2					0	0	0.004482	0	0
AKAP3	10566	broad.mit.edu	37	12	4736484	4736484	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:4736484G>A	uc001qnb.3	-	4	1813	c.1584C>T	c.(1582-1584)ATC>ATT	p.I528I		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	528					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						GGGCAGACACGATCAGGTCCT	0.517000													8	1					0	0	0.004482	0	0
CD163L1	283316	broad.mit.edu	37	12	7531660	7531660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:7531660C>T	uc001qsy.2	-	9	2311	c.2285G>A	c.(2284-2286)GGG>GAG	p.G762E	CD163L1_uc010sge.1_Missense_Mutation_p.G772E	NM_174941	NP_777601	Q9NR16	C163B_HUMAN	scavenger receptor cysteine-rich type 1	762	SRCR 7.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	scavenger receptor activity			ovary(8)|skin(2)|central_nervous_system(1)	11						AGAGGCTTCCCCTCCAGTGCA	0.453000													37	11					0	0	0.003755	0	0
A2ML1	144568	broad.mit.edu	37	12	8995863	8995864	+	Missense_Mutation	DNP	CC	AT	AT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:8995863_8995864CC>AT	uc001quz.3	+	12	1480_1481	c.1382_1383CC>AT	c.(1381-1383)CCC>CAT	p.P461H	A2ML1_uc001qva.1_Missense_Mutation_p.P41H|A2ML1_uc010sgm.1_5'Flank	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	305						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						CTAAACGGCCCCTTGAAATGTG	0.559000													49	13					0	0	0.004672	0	0
GRIN2B	2904	broad.mit.edu	37	12	13906748	13906748	+	Silent	SNP	G	A	A	rs3026183		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:13906748G>A	uc001rbt.2	-	3	692	c.513C>T	c.(511-513)ATC>ATT	p.I171I		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	171	Extracellular (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	AGGTGGTGACGATAGAAAAGA	0.463000													16	4					0	0	0.006122	0	0
PIK3C2G	5288	broad.mit.edu	37	12	18691166	18691166	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:18691166C>T	uc001rdt.2	+	24	3393	c.3277C>T	c.(3277-3279)CAA>TAA	p.Q1093*	PIK3C2G_uc010sia.1_RNA|PIK3C2G_uc010sib.1_Nonsense_Mutation_p.Q1134*|PIK3C2G_uc010sic.1_Nonsense_Mutation_p.Q912*	NM_004570	NP_004561	O75747	P3C2G_HUMAN	phosphoinositide-3-kinase, class 2 gamma	1093	PI3K/PI4K.				cell communication|phosphatidylinositol-mediated signaling	membrane|phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity			lung(8)|central_nervous_system(6)|breast(3)|stomach(2)|ovary(2)	21		Hepatocellular(102;0.194)				ACAGCATTTTCAAGATTTTGT	0.398000													4	8					0	0	0.000248	0	0
PKP2	5318	broad.mit.edu	37	12	32994096	32994096	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:32994096G>A	uc001rlj.3	-	7	1669	c.1554C>T	c.(1552-1554)CTC>CTT	p.L518L	PKP2_uc001rlk.3_Silent_p.L474L|PKP2_uc010skj.1_Silent_p.L474L	NM_004572	NP_004563	Q99959	PKP2_HUMAN	plakophilin 2 isoform 2b	518					cell-cell adhesion	desmosome|integral to membrane|nucleus	binding			ovary(1)|pancreas(1)	2	Lung NSC(5;9.35e-07)|Acute lymphoblastic leukemia(23;0.0122)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.239)					CTGTTATCATGAGATTCTTGA	0.438000													63	63					0	0	0.003610	0	0
ADAMTS20	80070	broad.mit.edu	37	12	43769272	43769272	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:43769272C>T	uc010skx.1	-	36	5356	c.5356G>A	c.(5356-5358)GAA>AAA	p.E1786K		NM_025003	NP_079279	P59510	ATS20_HUMAN	a disintegrin-like and metalloprotease with	1786	GON.					proteinaceous extracellular matrix	zinc ion binding			central_nervous_system(5)|ovary(4)|lung(3)|large_intestine(2)|skin(2)|urinary_tract(1)|kidney(1)|pancreas(1)	19	all_cancers(12;2.6e-05)|Lung SC(27;0.184)	Lung NSC(34;0.0569)|all_lung(34;0.129)		GBM - Glioblastoma multiforme(48;0.0473)		TCACAGTCTTCCCTTCTACTC	0.358000													60	83					0	0	0.003610	0	0
RACGAP1P	83956	broad.mit.edu	37	12	45459173	45459173	+	RNA	SNP	A	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:45459173A>C	uc001rol.2	-	1		c.22T>G				NR_026583				Homo sapiens FKSG42 (FKSG42) mRNA, complete cds.												0						GCAGCCCTTCACTTTGCTCTG	0.463000													2	3					0	0	0.004672	0	0
H1FNT	341567	broad.mit.edu	37	12	48723128	48723128	+	Silent	SNP	G	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:48723128G>T	uc001rrm.2	+	1	366	c.54G>T	c.(52-54)GGG>GGT	p.G18G		NM_181788	NP_861453	Q75WM6	H1FNT_HUMAN	H1 histone family, member N, testis-specific	18					chromosome condensation|multicellular organismal development|sperm chromatin condensation|spermatid nucleus elongation	nuclear chromatin	ATP binding|DNA binding			pancreas(1)	1						GCAGAGGCGGGAGTGGGGCCA	0.652000													8	9					5.18039e-06	1.12242e-05	0.003080	1	0
DDN	23109	broad.mit.edu	37	12	49391257	49391257	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:49391257G>A	uc001rsv.1	-	2	1420	c.1402C>T	c.(1402-1404)CCA>TCA	p.P468S	uc001rsw.2_5'Flank	NM_015086	NP_055901	O94850	DEND_HUMAN	dendrin	468	Interaction with CD2AP and NPHS1 (By similarity).					dendritic spine membrane|endoplasmic reticulum membrane|nucleus|perikaryon				large_intestine(1)	1						CGGGGGGTTGGAACATATTGG	0.632000													26	34					0	0	0.006320	0	0
KRT83	3889	broad.mit.edu	37	12	52711714	52711714	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:52711714C>T	uc001saf.2	-	3	697	c.634G>A	c.(634-636)GAG>AAG	p.E212K		NM_002282	NP_002273	P78385	KRT83_HUMAN	keratin 83	212	Rod.|Coil 1B.				epidermis development	keratin filament	structural molecule activity			skin(1)	1	Myeloproliferative disorder(4;0.0484)|all_hematologic(5;0.088)			BRCA - Breast invasive adenocarcinoma(357;0.189)		GCCACAAACTCGTTCTCTGCT	0.562000													142	154					0	0	0.003610	0	0
KRT5	3852	broad.mit.edu	37	12	52913684	52913684	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:52913684G>A	uc001san.2	-	1	560	c.397C>T	c.(397-399)CCT>TCT	p.P133S	KRT5_uc009zmh.2_Missense_Mutation_p.P133S	NM_000424	NP_000415	P13647	K2C5_HUMAN	keratin 5	133	Head.|Gly-rich.				epidermis development|hemidesmosome assembly	cytosol|keratin filament	protein binding|structural constituent of cytoskeleton				0				BRCA - Breast invasive adenocarcinoma(357;0.189)		GGGCAGACAGGAAAGCCAGGG	0.353000													22	26					0	0	0.001882	0	0
IKZF4	64375	broad.mit.edu	37	12	56427047	56427047	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:56427047C>T	uc001sjb.1	+	8	1098	c.939C>T	c.(937-939)ATC>ATT	p.I313I	IKZF4_uc010sqa.1_Silent_p.I266I|IKZF4_uc001sjc.1_Silent_p.I313I|IKZF4_uc001sjd.1_Silent_p.I211I|IKZF4_uc009zoi.1_Silent_p.I268I|IKZF4_uc001sje.1_Silent_p.I272I	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	313					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			CAACTTTCATCGATCGTCTGG	0.512000													40	62					0	0	0.001951	0	0
IKZF4	64375	broad.mit.edu	37	12	56428417	56428417	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:56428417G>A	uc001sjb.1	+	9	1219	c.1060G>A	c.(1060-1062)GAA>AAA	p.E354K	IKZF4_uc010sqa.1_Missense_Mutation_p.E307K|IKZF4_uc001sjc.1_Missense_Mutation_p.E354K|IKZF4_uc001sjd.1_Missense_Mutation_p.E252K|IKZF4_uc009zoi.1_Missense_Mutation_p.E309K|IKZF4_uc001sje.1_Missense_Mutation_p.E313K	NM_022465	NP_071910	Q9H2S9	IKZF4_HUMAN	zinc finger protein, subfamily 1A, 4	354					negative regulation of transcription, DNA-dependent	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (6;0.025)|OV - Ovarian serous cystadenocarcinoma(18;0.123)			GGGTGGCTATGAAAAGGATGT	0.577000													43	68					0	0	0.002852	0	0
SLC39A5	283375	broad.mit.edu	37	12	56625305	56625305	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:56625305G>A	uc010sqj.1	+	4	504	c.247G>A	c.(247-249)GGA>AGA	p.G83R	SLC39A5_uc010sqi.1_5'UTR|SLC39A5_uc010sqk.1_Missense_Mutation_p.G83R	NM_173596	NP_775867	Q6ZMH5	S39A5_HUMAN	solute carrier family 39 (metal ion	83	Extracellular (By similarity).				zinc ion transport	basolateral plasma membrane|integral to membrane	metal ion transmembrane transporter activity			ovary(1)|skin(1)	2						GCCTCTGACTGGACGGGCTGC	0.642000													25	28					0	0	0.005443	0	0
RDH16	8608	broad.mit.edu	37	12	57346775	57346775	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:57346775C>T	uc001smi.3	-	3	745	c.573_splice	c.e3-1	p.R191_splice	RDH16_uc009zpa.2_Splice_Site_p.R46_splice	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16						lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						GAGTTCCCTCCTGCAAGACAG	0.428000													25	45					0	0	0.006320	0	0
LRP1	4035	broad.mit.edu	37	12	57585108	57585108	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:57585108C>T	uc001snd.2	+	44	7708	c.7242C>T	c.(7240-7242)ATC>ATT	p.I2414I		NM_002332	NP_002323	Q07954	LRP1_HUMAN	low density lipoprotein-related protein 1	2414	LDL-receptor class B 24.|Extracellular (Potential).				aorta morphogenesis|apoptotic cell clearance|negative regulation of platelet-derived growth factor receptor-beta signaling pathway|negative regulation of smooth muscle cell migration|negative regulation of Wnt receptor signaling pathway|positive regulation of cholesterol efflux|regulation of actin cytoskeleton organization|regulation of phospholipase A2 activity	coated pit|integral to plasma membrane|nucleus	apolipoprotein E binding|calcium ion binding|lipoprotein transporter activity|protein complex binding|receptor activity			ovary(8)|lung(3)|breast(3)|large_intestine(2)|central_nervous_system(2)|skin(2)|pancreas(2)	22				BRCA - Breast invasive adenocarcinoma(357;0.0103)	Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Becaplermin(DB00102)|Coagulation Factor IX(DB00100)|Tenecteplase(DB00031)	CACAGGTGATCCTAAAGTCAG	0.627000													11	10					0	0	0.000673	0	0
KIF5A	3798	broad.mit.edu	37	12	57957968	57957968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:57957968G>A	uc001sor.1	+	4	577	c.369G>A	c.(367-369)ATG>ATA	p.M123I	KIF5A_uc010srr.1_Intron	NM_004984	NP_004975	Q12840	KIF5A_HUMAN	kinesin family member 5A	123	Kinesin-motor.				blood coagulation|cell death|microtubule-based movement|synaptic transmission	cytosol|kinesin complex|membrane fraction|microtubule|perinuclear region of cytoplasm	ATP binding|microtubule motor activity			ovary(2)|skin(1)	3						TCTACTCCATGGATGAGAACC	0.512000													22	36					0	0	0.002780	0	0
AGAP2	116986	broad.mit.edu	37	12	58126232	58126232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:58126232G>A	uc001spq.2	-	7	1748	c.1748C>T	c.(1747-1749)CCC>CTC	p.P583L	AGAP2_uc001spp.2_Missense_Mutation_p.P583L|AGAP2_uc001spr.2_Missense_Mutation_p.P247L	NM_001122772	NP_001116244	Q99490	AGAP2_HUMAN	centaurin, gamma 1 isoform PIKE-L	583					axon guidance|negative regulation of neuron apoptosis|negative regulation of protein catabolic process|protein transport|regulation of ARF GTPase activity|small GTPase mediated signal transduction	mitochondrion|nucleolus	ARF GTPase activator activity|GTP binding|zinc ion binding			central_nervous_system(3)|breast(2)	5						TGGGGAGCTGGGCAGGGACTT	0.627000													3	6					0	0	0.000248	0	0
AVIL	10677	broad.mit.edu	37	12	58204681	58204681	+	Missense_Mutation	SNP	C	T	T	rs150762636	by1000genomes	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:58204681C>T	uc001sqj.1	-	5	505	c.476G>A	c.(475-477)CGA>CAA	p.R159Q	AVIL_uc009zqe.1_Missense_Mutation_p.R152Q|AVIL_uc001sqk.1_5'Flank|AVIL_uc001sql.3_Missense_Mutation_p.R136Q	NM_006576	NP_006567	O75366	AVIL_HUMAN	advillin	159	Gelsolin-like 2.|Core (By similarity).				actin filament capping|cilium morphogenesis|cytoskeleton organization|positive regulation of neuron projection development	actin cytoskeleton|axon|cytoplasm	actin binding			central_nervous_system(1)	1	Glioma(12;6.95e-05)|all_neural(12;0.00016)|Melanoma(17;0.122)					GACATCACCTCGGTTGAAACT	0.542000													43	64					0	0	0.002852	0	0
BEST3	144453	broad.mit.edu	37	12	70049528	70049529	+	Missense_Mutation	DNP	TG	AT	AT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:70049528_70049529TG>AT	uc001svg.2	-	10	1392_1393	c.1165_1166CA>AT	c.(1165-1167)CAT>ATT	p.H389I	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.H176I|BEST3_uc010stm.1_Missense_Mutation_p.H283I	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	389	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			TATCATGGAATGCCGATGGCCA	0.540000													8	14					0	0	0.004672	0	0
PTPRB	5787	broad.mit.edu	37	12	71029730	71029730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:71029730C>T	uc001swc.3	-	2	216	c.172G>A	c.(172-174)GAA>AAA	p.E58K	PTPRB_uc001swa.3_Missense_Mutation_p.E58K|PTPRB_uc001swd.3_Missense_Mutation_p.E57K|PTPRB_uc009zrr.1_Missense_Mutation_p.E58K|PTPRB_uc001swe.2_Missense_Mutation_p.E58K	NM_001109754	NP_001103224	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	Error:Variant_position_missing_in_P23467_after_alignment					angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGGAGCTTTTCATCCTCAGTC	0.532000													8	2					0	0	0.003080	0	0
TRHDE	29953	broad.mit.edu	37	12	72956724	72956724	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:72956724G>A	uc001sxa.2	+	9	1841	c.1811G>A	c.(1810-1812)GGA>GAA	p.G604E		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	604	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						ACCATCTTGGGAAACACAACA	0.333000													71	73					0	0	0.003610	0	0
Unknown	0	broad.mit.edu	37	12	80761412	80761412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:80761412G>A	uc009zsg.1	+	8	617	c.16G>A	c.(16-18)GAA>AAA	p.E6K	uc001szd.2_Missense_Mutation_p.E145K					RecName: Full=Uncharacterized protein C12orf64;																		AAAGTATTTGGAAGAAGACTT	0.328000													3	3					0	0	0.000248	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85441190	85441190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:85441190G>A	uc001tac.2	+	6	731	c.620G>A	c.(619-621)CGA>CAA	p.R207Q	LRRIQ1_uc001tab.1_Missense_Mutation_p.R207Q|LRRIQ1_uc001taa.1_Missense_Mutation_p.R207Q|LRRIQ1_uc001tad.2_Missense_Mutation_p.R115Q	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	207	Glu-rich.									ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		GAAGAAAAGCGACATTGCTGG	0.313000													76	109					0	0	0.003610	0	0
STAB2	55576	broad.mit.edu	37	12	104031812	104031812	+	Missense_Mutation	SNP	G	A	A	rs115145720	byFrequency	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:104031812G>A	uc001tjw.2	+	8	914	c.728G>A	c.(727-729)CGA>CAA	p.R243Q		NM_017564	NP_060034	Q8WWQ8	STAB2_HUMAN	stabilin 2 precursor	243	Extracellular (Potential).|EGF-like 4.				angiogenesis|cell adhesion|defense response to bacterium|receptor-mediated endocytosis	cytoplasm|external side of plasma membrane|integral to plasma membrane	Gram-negative bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			ovary(9)|skin(5)	14						CCATGTTTACGAAAAATCTGC	0.493000													45	73					0	0	0.003610	0	0
WSCD2	9671	broad.mit.edu	37	12	108603912	108603912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:108603912G>A	uc001tms.2	+	4	1256	c.512G>A	c.(511-513)GGC>GAC	p.G171D	WSCD2_uc001tmt.2_Missense_Mutation_p.G171D	NM_014653	NP_055468	Q2TBF2	WSCD2_HUMAN	WSC domain containing 2	171	WSC 1.					integral to membrane		p.G171G(1)		ovary(1)|large_intestine(1)|breast(1)	3						TACCTGTATGGCGGGCTGGAG	0.652000													15	17					0	0	0.006122	0	0
MYL2	4633	broad.mit.edu	37	12	111353546	111353546	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:111353546C>T	uc001try.3	-	3	213	c.142G>A	c.(142-144)GAT>AAT	p.D48N	MYL2_uc001trx.3_Missense_Mutation_p.D29N	NM_000432	NP_000423	P10916	MLRV_HUMAN	slow cardiac myosin regulatory light chain 2	48	|EF-hand 1.				cardiac myofibril assembly|heart contraction|muscle filament sliding|negative regulation of cell growth|regulation of striated muscle contraction|ventricular cardiac muscle tissue morphogenesis	cytosol|myosin complex|sarcomere	actin monomer binding|calcium ion binding|myosin heavy chain binding|structural constituent of muscle			ovary(1)	1						TCTCTCAGATCGTTCTTGTCA	0.527000													67	96					0	0	0.003610	0	0
CUX2	23316	broad.mit.edu	37	12	111785947	111785947	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:111785947G>A	uc001tsa.1	+	22	4432	c.4279G>A	c.(4279-4281)GCC>ACC	p.A1427T		NM_015267	NP_056082	O14529	CUX2_HUMAN	cut-like 2	1427	Pro-rich.					nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|breast(1)	6						CCCACCTGGCGCCCCCCCTGC	0.657000													32	31					0	0	0.001786	0	0
RPL6	6128	broad.mit.edu	37	12	112846077	112846077	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:112846077G>A	uc001ttu.2	-	3	532	c.303C>T	c.(301-303)AAC>AAT	p.N101N	RPL6_uc001ttv.2_Silent_p.N101N|RPL6_uc009zwd.1_3'UTR	NM_001024662	NP_001019833	Q02878	RL6_HUMAN	ribosomal protein L6	101					endocrine pancreas development|regulation of transcription, DNA-dependent|translational elongation|translational termination|viral transcription	cytosolic large ribosomal subunit	DNA binding|RNA binding|structural constituent of ribosome			large_intestine(1)	1						GGGTACCGCCGTTCTTGTCAC	0.398000													67	66					0	0	0.003610	0	0
FBXW8	26259	broad.mit.edu	37	12	117402562	117402562	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:117402562C>T	uc001twg.1	+	5	820	c.738C>T	c.(736-738)TTC>TTT	p.F246F	FBXW8_uc001twf.1_Silent_p.F180F|FBXW8_uc009zwp.1_RNA	NM_153348	NP_699179	Q8N3Y1	FBXW8_HUMAN	F-box and WD repeat domain containing 8 isoform	246							protein binding			ovary(2)|pancreas(1)	3	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0353)		TAGCCCCCTTCCTGGAATCAG	0.512000													34	46					0	0	0.003271	0	0
OASL	8638	broad.mit.edu	37	12	121471506	121471506	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:121471506C>T	uc001tzj.1	-	2	245	c.239G>A	c.(238-240)AGA>AAA	p.R80K	OASL_uc001tzk.1_Missense_Mutation_p.R80K	NM_003733	NP_003724	Q15646	OASL_HUMAN	2'-5'-oligoadenylate synthetase-like isoform a	80					interferon-gamma-mediated signaling pathway|type I interferon-mediated signaling pathway	cytoplasm|nucleolus	ATP binding|DNA binding|double-stranded RNA binding|thyroid hormone receptor binding|transferase activity			skin(1)	1	all_neural(191;0.0684)|Medulloblastoma(191;0.0922)					CTCCACCTCTCTGGTGCTCCT	0.473000													102	150					0	0	0.003610	0	0
B3GNT4	79369	broad.mit.edu	37	12	122691326	122691326	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:122691326G>A	uc001ubx.2	+	3	746	c.528G>A	c.(526-528)AGG>AGA	p.R176R	B3GNT4_uc001uby.2_Silent_p.R151R	NM_030765	NP_110392	Q9C0J1	B3GN4_HUMAN	UDP-GlcNAc:betaGal	176	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosyltransferase activity			ovary(1)	1	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000297)|Epithelial(86;0.000497)|BRCA - Breast invasive adenocarcinoma(302;0.222)		ATGAGAGTAGGGAGTTTGATG	0.642000													16	27					0	0	0.004007	0	0
TMEM132B	114795	broad.mit.edu	37	12	126139164	126139164	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:126139164G>A	uc001uhe.1	+	9	3153	c.3145G>A	c.(3145-3147)GAT>AAT	p.D1049N	TMEM132B_uc001uhf.1_Missense_Mutation_p.D561N	NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	1049	Cytoplasmic (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GTTTGACAGCGATGATAACAT	0.498000													37	22					0	0	0.004289	0	0
GPR133	283383	broad.mit.edu	37	12	131620641	131620641	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr12:131620641G>A	uc001uit.3	+	22	2886	c.2327G>A	c.(2326-2328)GGC>GAC	p.G776D	GPR133_uc010tbm.1_Missense_Mutation_p.G808D|GPR133_uc009zyo.2_Missense_Mutation_p.G58D|GPR133_uc009zyp.2_RNA	NM_198827	NP_942122	Q6QNK2	GP133_HUMAN	G protein-coupled receptor 133 precursor	776	Helical; Name=6; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			pancreas(5)|ovary(3)|skin(2)	10	all_neural(191;0.0982)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;1.68e-06)|all cancers(50;2.71e-06)|Epithelial(86;6.75e-06)		TGGGTCTTTGGCGTGCTTGCT	0.617000													17	21					0	0	0.002299	0	0
RXFP2	122042	broad.mit.edu	37	13	32340124	32340124	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:32340124C>T	uc001utt.2	+	5	528	c.457C>T	c.(457-459)CCA>TCA	p.P153S	RXFP2_uc010aba.2_Missense_Mutation_p.P136S	NM_130806	NP_570718	Q8WXD0	RXFP2_HUMAN	relaxin/insulin-like family peptide receptor 2	153	LRR 1.|Extracellular (Potential).					integral to membrane|plasma membrane					0		Lung SC(185;0.0262)		all cancers(112;0.000559)|Epithelial(112;0.0017)|OV - Ovarian serous cystadenocarcinoma(117;0.0145)|BRCA - Breast invasive adenocarcinoma(63;0.0535)		ccacagtcttccAGATAAAGT	0.254000													6	4					0	0	0.001168	0	0
ATP7B	540	broad.mit.edu	37	13	52542667	52542667	+	Silent	SNP	G	A	A	rs145798966	by1000genomes	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:52542667G>A	uc001vfw.2	-	4	1777	c.1620C>T	c.(1618-1620)CTC>CTT	p.L540L	ATP7B_uc010adv.2_Intron|ATP7B_uc001vfx.2_Silent_p.L540L|ATP7B_uc001vfy.2_Silent_p.L429L|ATP7B_uc010tgt.1_Silent_p.L540L|ATP7B_uc010tgu.1_Silent_p.L540L|ATP7B_uc010tgv.1_Silent_p.L540L|ATP7B_uc010tgw.1_Intron	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	540	HMA 5.|Cytoplasmic (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		GAGCTATCTCGAGGGGCTGGA	0.537000									Wilson_disease				21	27					0	0	0.001882	0	0
KLHL1	57626	broad.mit.edu	37	13	70681651	70681651	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:70681651C>T	uc001vip.2	-	1	975	c.181G>A	c.(181-183)GAG>AAG	p.E61K	KLHL1_uc010thm.1_Missense_Mutation_p.E61K|ATXN8OS_uc010aej.1_RNA	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	61	Ser-rich.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		CCGCTTCTCTCTTGGCTTTTG	0.468000													36	53					0	0	0.002852	0	0
HS6ST3	266722	broad.mit.edu	37	13	97485349	97485349	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:97485349G>A	uc001vmw.2	+	2	1337	c.1313G>A	c.(1312-1314)CGG>CAG	p.R438Q		NM_153456	NP_703157	Q8IZP7	H6ST3_HUMAN	heparan sulfate 6-O-sulfotransferase 3	438	Lumenal (Potential).					integral to membrane	sulfotransferase activity			ovary(1)|skin(1)	2	all_neural(89;0.0878)|Medulloblastoma(90;0.163)					CGGGAGGAGCGGAGGCTGCAG	0.597000													8	16					0	0	0.004482	0	0
SLC15A1	6564	broad.mit.edu	37	13	99356675	99356675	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:99356675C>T	uc001vno.2	-	17	1361	c.1284G>A	c.(1282-1284)ATG>ATA	p.M428I		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	428	Extracellular (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	CATCAAAAGTCATAAATGCAT	0.438000													29	18					0	0	0.002445	0	0
MYO16	23026	broad.mit.edu	37	13	109318440	109318440	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:109318440C>T	uc001vqt.1	+	2	295	c.169C>T	c.(169-171)CAC>TAC	p.H57Y	MYO16_uc010agk.1_Missense_Mutation_p.H79Y	NM_015011	NP_055826	Q9Y6X6	MYO16_HUMAN	myosin heavy chain Myr 8	57					cerebellum development|negative regulation of cell proliferation|negative regulation of S phase of mitotic cell cycle	myosin complex|nucleoplasm|perinuclear region of cytoplasm|plasma membrane	actin filament binding|ATP binding|motor activity			ovary(6)|large_intestine(1)|kidney(1)|breast(1)|central_nervous_system(1)	10	all_lung(23;0.000332)|all_neural(89;0.00294)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00751)|Lung SC(71;0.104)		BRCA - Breast invasive adenocarcinoma(86;0.19)|all cancers(43;0.201)			TCCGAAAGTTCACTTCAACCT	0.458000													4	7					0	0	0.000602	0	0
COL4A1	1282	broad.mit.edu	37	13	110859775	110859775	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:110859775C>T	uc001vqw.3	-	13	877	c.755G>A	c.(754-756)GGA>GAA	p.G252E	COL4A1_uc010agl.2_Missense_Mutation_p.G252E	NM_001845	NP_001836	P02462	CO4A1_HUMAN	alpha 1 type IV collagen preproprotein	252	Triple-helical region.				angiogenesis|axon guidance		extracellular matrix structural constituent|platelet-derived growth factor binding			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6	all_cancers(4;9.8e-13)|all_epithelial(4;9.66e-08)|all_lung(23;3.75e-06)|Lung NSC(43;0.000274)|Colorectal(4;0.00178)|all_neural(89;0.00459)|Medulloblastoma(90;0.00596)|Lung SC(71;0.0604)	Breast(118;0.2)	BRCA - Breast invasive adenocarcinoma(86;0.11)|all cancers(43;0.145)			GGCGAAGTCTCCTTTTTCTTG	0.408000													64	115					0	0	0.003610	0	0
F10	2159	broad.mit.edu	37	13	113803660	113803660	+	Silent	SNP	C	T	T	rs139031355		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr13:113803660C>T	uc001vsx.2	+	8	1353	c.1296C>T	c.(1294-1296)TTC>TTT	p.F432F	F10_uc001vsy.2_3'UTR|F10_uc001vsz.2_3'UTR	NM_000504	NP_000495	P00742	FA10_HUMAN	coagulation factor X preproprotein	432	Peptidase S1.				blood coagulation, extrinsic pathway|blood coagulation, intrinsic pathway|peptidyl-glutamic acid carboxylation|positive regulation of cell migration|positive regulation of protein kinase B signaling cascade|post-translational protein modification|proteolysis	endoplasmic reticulum lumen|extracellular region|Golgi lumen	calcium ion binding|phospholipid binding|protein binding|serine-type endopeptidase activity			pancreas(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)	all_cancers(25;0.113)|all_lung(25;0.0364)|all_epithelial(44;0.0373)|Lung NSC(25;0.128)|Breast(118;0.188)	all cancers(43;0.0805)|Epithelial(84;0.231)		Alteplase(DB00009)|Anistreplase(DB00029)|Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Coagulation factor VIIa(DB00036)|Enoxaparin(DB01225)|Heparin(DB01109)|Menadione(DB00170)|Reteplase(DB00015)|Tenecteplase(DB00031)	ACACCTACTTCGTGACAGGCA	0.622000													22	44					0	0	0.001523	0	0
OR10G3	26533	broad.mit.edu	37	14	22038596	22038596	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:22038596G>A	uc010tmb.1	-	1	280	c.280C>T	c.(280-282)CCA>TCA	p.P94S		NM_001005465	NP_001005465	Q8NGC4	O10G3_HUMAN	olfactory receptor, family 10, subfamily G,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			large_intestine(1)|central_nervous_system(1)	2	all_cancers(95;0.000987)			GBM - Glioblastoma multiforme(265;0.0139)		CCACCAAATGGGATGGGTTTG	0.473000													16	29					0	0	0.006122	0	0
NOVA1	4857	broad.mit.edu	37	14	26949268	26949268	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:26949268C>T	uc001wpy.2	-	3	680	c.362G>A	c.(361-363)CGA>CAA	p.R121Q	NOVA1_uc001wpz.2_Missense_Mutation_p.R121Q|NOVA1_uc001wqa.2_5'UTR|NOVA1_uc001wqb.2_Missense_Mutation_p.R121Q	NM_002515	NP_002506	P51513	NOVA1_HUMAN	neuro-oncological ventral antigen 1 isoform 1	124					locomotory behavior|RNA splicing|synaptic transmission	nucleus	RNA binding			skin(2)|upper_aerodigestive_tract(1)|breast(1)|liver(1)	5				GBM - Glioblastoma multiforme(265;0.0135)		GGGCATTTCTCGAATTTTTTC	0.443000													44	50					0	0	0.001951	0	0
CLEC14A	161198	broad.mit.edu	37	14	38723763	38723763	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:38723763C>T	uc001wum.1	-	1	1812	c.1465G>A	c.(1465-1467)GAT>AAT	p.D489N		NM_175060	NP_778230	Q86T13	CLC14_HUMAN	C-type lectin domain family 14, member A	489	Cytoplasmic (Potential).					integral to membrane	sugar binding			ovary(3)|skin(1)	4	Hepatocellular(127;0.213)|Esophageal squamous(585;0.22)		Lung(238;3.93e-06)|LUAD - Lung adenocarcinoma(48;2.62e-05)|Epithelial(34;0.187)	GBM - Glioblastoma multiforme(112;0.00439)		CCCTATGCATCACTAGAGCCA	0.502000													30	26					0	0	0.001786	0	0
PNN	5411	broad.mit.edu	37	14	39650092	39650092	+	Silent	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:39650092T>C	uc001wuw.3	+	9	1276	c.1179T>C	c.(1177-1179)GTT>GTC	p.V393V		NM_002687	NP_002678	Q9H307	PININ_HUMAN	pinin, desmosome associated protein	393	Glu-rich.				cell adhesion|regulation of transcription, DNA-dependent|transcription, DNA-dependent	catalytic step 2 spliceosome|desmosome|intermediate filament|nuclear speck	DNA binding|protein binding|structural molecule activity			ovary(1)	1	Hepatocellular(127;0.213)		LUAD - Lung adenocarcinoma(48;0.000565)|Lung(238;0.000711)	GBM - Glioblastoma multiforme(112;0.0119)		TAGAGATGGTTGAGAATGTCA	0.274000													19	27					0	0	0.001523	0	0
NID2	22795	broad.mit.edu	37	14	52505568	52505568	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:52505568G>A	uc001wzo.2	-	9	2388	c.2154C>T	c.(2152-2154)TTC>TTT	p.F718F	NID2_uc010tqs.1_Silent_p.F718F|NID2_uc010tqt.1_Silent_p.F718F|NID2_uc001wzp.2_Silent_p.F718F	NM_007361	NP_031387	Q14112	NID2_HUMAN	nidogen 2 precursor	718	Nidogen G2 beta-barrel.					basement membrane	calcium ion binding|collagen binding			pancreas(2)|breast(2)|ovary(1)|liver(1)|skin(1)	7	Breast(41;0.0639)|all_epithelial(31;0.123)					GGGTGGTGGGGAAGGACGGGT	0.527000													25	42					0	0	0.005443	0	0
FBXO34	55030	broad.mit.edu	37	14	55818286	55818286	+	Missense_Mutation	SNP	C	T	T	rs149853453		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:55818286C>T	uc001xbu.2	+	2	1423	c.1178C>T	c.(1177-1179)TCG>TTG	p.S393L	FBXO34_uc001xbv.2_RNA|FBXO34_uc010aoo.2_Missense_Mutation_p.S393L	NM_017943	NP_060413	Q9NWN3	FBX34_HUMAN	F-box only protein 34	393										ovary(2)|lung(2)|skin(1)	5						GAGCCGGGTTCGCAAACTGCC	0.512000													25	13					0	0	0.003330	0	0
KTN1	3895	broad.mit.edu	37	14	56078982	56078982	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:56078982C>T	uc001xcb.2	+	3	518	c.216C>T	c.(214-216)CTC>CTT	p.L72L	KTN1_uc001xce.2_Silent_p.L72L|KTN1_uc001xcc.2_Silent_p.L72L|KTN1_uc001xcd.2_Silent_p.L72L|KTN1_uc010trb.1_Silent_p.L72L|KTN1_uc001xcf.1_Silent_p.L72L	NM_182926	NP_891556	Q86UP2	KTN1_HUMAN	kinectin 1 isoform a	72	Lumenal (Potential).				microtubule-based movement	endoplasmic reticulum membrane|integral to plasma membrane|membrane fraction				breast(3)|ovary(2)|lung(1)|central_nervous_system(1)	7						ATGGAAACCTCCATGAATCCG	0.308000			T	RET	papillary thryoid								9	13					0	0	0.006214	0	0
ZFYVE26	23503	broad.mit.edu	37	14	68242656	68242656	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:68242656C>G	uc001xka.2	-	26	5281	c.5142G>C	c.(5140-5142)ATG>ATC	p.M1714I	ZFYVE26_uc010tsz.1_RNA|ZFYVE26_uc001xkc.3_Missense_Mutation_p.M1714I	NM_015346	NP_056161	Q68DK2	ZFY26_HUMAN	zinc finger, FYVE domain containing 26	1714					cell cycle|cell death|cytokinesis|double-strand break repair via homologous recombination	centrosome|midbody	metal ion binding|phosphatidylinositol-3-phosphate binding|protein binding			ovary(9)|breast(2)	11				all cancers(60;0.000763)|OV - Ovarian serous cystadenocarcinoma(108;0.0011)|BRCA - Breast invasive adenocarcinoma(234;0.0115)		CCACCTCGTCCATAGTGAAGC	0.527000													3	40					0	0	0.004672	0	0
ACTN1	87	broad.mit.edu	37	14	69346820	69346820	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:69346820G>A	uc001xkl.2	-	18	2449	c.2139C>T	c.(2137-2139)ATC>ATT	p.I713I	ACTN1_uc001xkk.2_Silent_p.I309I|ACTN1_uc010ttb.1_Silent_p.I648I|ACTN1_uc001xkm.2_Silent_p.I713I|ACTN1_uc001xkn.2_Silent_p.I713I|ACTN1_uc010ttc.1_Silent_p.I298I	NM_001102	NP_001093	P12814	ACTN1_HUMAN	actinin, alpha 1 isoform b	713	Spectrin 4.|Interaction with DDN.				focal adhesion assembly|negative regulation of cellular component movement|platelet activation|platelet degranulation|regulation of apoptosis	actin cytoskeleton|cytosol|extracellular region|focal adhesion|nucleolus|platelet alpha granule lumen|pseudopodium|sarcomere	actin binding|calcium ion binding|integrin binding|vinculin binding			central_nervous_system(1)	1				BRCA - Breast invasive adenocarcinoma(234;0.00605)|all cancers(60;0.00846)|OV - Ovarian serous cystadenocarcinoma(108;0.0654)		AGCCCACACGGATGTGCTGCA	0.637000													23	44					0	0	0.003954	0	0
MAP3K9	4293	broad.mit.edu	37	14	71209197	71209197	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:71209197G>A	uc001xmm.2	-	6	1438	c.1438C>T	c.(1438-1440)CTG>TTG	p.L480L	MAP3K9_uc010ttk.1_Silent_p.L217L|MAP3K9_uc001xmk.2_Silent_p.L174L|MAP3K9_uc001xml.2_Silent_p.L480L	NM_033141	NP_149132	P80192	M3K9_HUMAN	mitogen-activated protein kinase kinase kinase	480	Leucine-zipper 2.				activation of JUN kinase activity|protein autophosphorylation		ATP binding|JUN kinase kinase kinase activity|MAP kinase kinase activity|protein homodimerization activity			stomach(2)|lung(1)|central_nervous_system(1)|skin(1)	5				all cancers(60;0.00779)|BRCA - Breast invasive adenocarcinoma(234;0.00884)|OV - Ovarian serous cystadenocarcinoma(108;0.08)		TCCCGTTCCAGGATGTCAATC	0.617000													16	24					0	0	0.007413	0	0
C14orf45	80127	broad.mit.edu	37	14	74516885	74516885	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:74516885G>A	uc010tup.1	+	8	1396	c.1273G>A	c.(1273-1275)GAG>AAG	p.E425K	C14orf45_uc001xpm.1_RNA	NM_025057	NP_079333	Q8ND07	CN045_HUMAN	hypothetical protein LOC80127	425											0				BRCA - Breast invasive adenocarcinoma(234;0.00351)		GGATCTTCTGGAGGCCGAAAA	0.358000													35	54					0	0	0.005524	0	0
CATSPERB	79820	broad.mit.edu	37	14	92136247	92136247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:92136247G>A	uc001xzs.1	-	14	1338	c.1198C>T	c.(1198-1200)CCA>TCA	p.P400S	CATSPERB_uc010aub.1_5'UTR	NM_024764	NP_079040	Q9H7T0	CTSRB_HUMAN	cation channel, sperm-associated, beta	400					cell differentiation|multicellular organismal development|spermatogenesis	integral to membrane				breast(2)|skin(2)|ovary(1)	5		all_cancers(154;0.0663)|all_epithelial(191;0.236)				CGAAAAATTGGAAATTTTGAT	0.408000													32	41					0	0	0.001512	0	0
TC2N	123036	broad.mit.edu	37	14	92278779	92278779	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:92278779C>T	uc001xzu.3	-	3	369	c.178G>A	c.(178-180)GAT>AAT	p.D60N	TC2N_uc001xzt.3_Missense_Mutation_p.D60N|TC2N_uc010auc.2_Missense_Mutation_p.D60N|TC2N_uc001xzv.3_Missense_Mutation_p.D60N	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	60				D -> G (in Ref. 1; BAC86538).		nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		AGCAAATAATCCTCAGTACAG	0.398000													6	7					0	0	0.001168	0	0
SERPINA1	5265	broad.mit.edu	37	14	94845850	94845850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:94845850C>T	uc001ycx.3	-	4	1277	c.1016G>A	c.(1015-1017)GGG>GAG	p.G339E	SERPINA1_uc001ycw.3_RNA|SERPINA1_uc010auw.2_Missense_Mutation_p.G339E|SERPINA1_uc010aux.2_Missense_Mutation_p.G339E|SERPINA1_uc001ycy.3_Missense_Mutation_p.G339E|SERPINA1_uc010auy.2_Missense_Mutation_p.G339E|SERPINA1_uc001ycz.3_Missense_Mutation_p.G339E|SERPINA1_uc010auz.2_Missense_Mutation_p.G339E|SERPINA1_uc010ava.2_Missense_Mutation_p.G339E|SERPINA1_uc001ydb.3_Missense_Mutation_p.G339E|SERPINA1_uc010avb.2_Missense_Mutation_p.G339E|SERPINA1_uc001ydc.3_Missense_Mutation_p.G339E|SERPINA1_uc001yda.1_Missense_Mutation_p.G339E	NM_000295	NP_000286	P01009	A1AT_HUMAN	serine proteinase inhibitor, clade A, member 1	339					acute-phase response|platelet activation|platelet degranulation|regulation of proteolysis	extracellular space|platelet alpha granule lumen|proteinaceous extracellular matrix	protease binding|serine-type endopeptidase inhibitor activity			skin(1)	1		all_cancers(154;0.0649)|all_epithelial(191;0.223)		Epithelial(152;0.135)|COAD - Colon adenocarcinoma(157;0.207)|all cancers(159;0.221)	Alpha-1-proteinase inhibitor(DB00058)	GAGGTCAGCCCCATTGCTGAA	0.532000									Alpha-1-Antitrypsin_Deficiency				65	53					0	0	0.003610	0	0
SERPINA5	5104	broad.mit.edu	37	14	95054219	95054219	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:95054219G>A	uc001ydm.2	+	3	730	c.520G>A	c.(520-522)GAT>AAT	p.D174N	SERPINA5_uc010ave.2_Missense_Mutation_p.D174N|SERPINA5_uc001ydn.1_Missense_Mutation_p.D174N	NM_000624	NP_000615	P05154	IPSP_HUMAN	serine (or cysteine) proteinase inhibitor, clade	174					fusion of sperm to egg plasma membrane|regulation of proteolysis|spermatogenesis	extracellular region|membrane|protein complex	acrosin binding|heparin binding|protease binding|serine-type endopeptidase inhibitor activity			ovary(2)	2				COAD - Colon adenocarcinoma(157;0.21)	Drotrecogin alfa(DB00055)|Urokinase(DB00013)	GCAGATCAATGATTATGTGGC	0.478000													38	51					0	0	0.004878	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102442131	102442131	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:102442131C>T	uc001yks.2	+	2	503	c.339C>T	c.(337-339)TCC>TCT	p.S113S		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	113	Stem (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GGGTTAAATCCAATAGGTGAG	0.289000													40	59					0	0	0.002222	0	0
DYNC1H1	1778	broad.mit.edu	37	14	102508412	102508412	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:102508412C>T	uc001yks.2	+	66	12329	c.12165C>T	c.(12163-12165)GTC>GTT	p.V4055V		NM_001376	NP_001367	Q14204	DYHC1_HUMAN	cytoplasmic dynein 1 heavy chain 1	4055	AAA 6 (By similarity).				cytoplasmic mRNA processing body assembly|G2/M transition of mitotic cell cycle|microtubule-based movement|mitotic spindle organization|stress granule assembly|transport	centrosome|cytoplasmic dynein complex|cytosol|Golgi apparatus|microtubule	ATP binding|ATPase activity, coupled|microtubule motor activity|protein binding			ovary(7)|central_nervous_system(2)|pancreas(1)	10						GTGGACATGTCGAGGACCTTG	0.517000													20	37					0	0	0.002299	0	0
TNFAIP2	7127	broad.mit.edu	37	14	103600051	103600051	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:103600051C>T	uc001ymm.1	+	10	1865	c.1734C>T	c.(1732-1734)CTC>CTT	p.L578L	TNFAIP2_uc010awo.1_Silent_p.L238L|TNFAIP2_uc010txz.1_Silent_p.L247L|TNFAIP2_uc010tya.1_Silent_p.L61L	NM_006291	NP_006282	Q03169	TNAP2_HUMAN	tumor necrosis factor, alpha-induced protein 2	578					angiogenesis|cell differentiation	extracellular space				central_nervous_system(1)	1		Melanoma(154;0.155)	Epithelial(46;0.191)			AGCCTGCTCTCCCTACGCTGG	0.637000													13	18					0	0	0.001855	0	0
AHNAK2	113146	broad.mit.edu	37	14	105408194	105408194	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:105408194G>A	uc010axc.1	-	7	13714	c.13594C>T	c.(13594-13596)CCA>TCA	p.P4532S	AHNAK2_uc001ypx.2_Missense_Mutation_p.P4432S	NM_138420	NP_612429	Q8IVF2	AHNK2_HUMAN	AHNAK nucleoprotein 2	4532						nucleus				ovary(1)	1		all_cancers(154;0.115)|Melanoma(154;0.155)|all_epithelial(191;0.183)	all cancers(16;0.000479)|OV - Ovarian serous cystadenocarcinoma(23;0.00659)|Epithelial(46;0.0151)|GBM - Glioblastoma multiforme(11;0.116)			TGGCCTTCTGGAAGTTTCAAG	0.622000													66	60					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	106667675	106667675	+	RNA	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:106667675C>T	uc010tyt.1	-	877		c.22190G>A								Parts of antibodies, mostly variable regions.												0						GATGGTGAATCGGCCCTTCAC	0.537000													67	71					0	0	0.003610	0	0
ADAM6	8755	broad.mit.edu	37	14	107259412	107259412	+	RNA	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr14:107259412G>A	uc010tyt.1	-	9		c.554C>T			uc001yta.1_Silent_p.I89I					Parts of antibodies, mostly variable regions.												0						TGTCGGCTGAGATGGTGACGT	0.577000													15	22					0	0	0.003163	0	0
OR4M2	390538	broad.mit.edu	37	15	22369401	22369401	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:22369401T>C	uc010tzu.1	+	1	826	c.826T>C	c.(826-828)TTC>CTC	p.F276L	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	276	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		GGTGTCTGTGTTCAATACTTT	0.383000													19	22					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	15	22473351	22473351	+	RNA	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:22473351C>T	uc001yuj.1	-	1		c.3G>A								Homo sapiens IGH mRNA for immunoglobulin heavy chain VHDJ region, partial cds, clone:H6.																		ACAGGTGTTTCATGTTCTTGT	0.512000													6	24					0	0	0.003080	0	0
TUBGCP5	114791	broad.mit.edu	37	15	22855265	22855265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:22855265G>A	uc001yur.3	+	13	1856	c.1726G>A	c.(1726-1728)GAG>AAG	p.E576K	TUBGCP5_uc001yuq.2_Missense_Mutation_p.E576K|TUBGCP5_uc010axz.1_Missense_Mutation_p.E163K	NM_052903	NP_443135	Q96RT8	GCP5_HUMAN	tubulin, gamma complex associated protein 5	576					G2/M transition of mitotic cell cycle|microtubule nucleation	centrosome|cytosol|gamma-tubulin ring complex|microtubule|spindle pole	microtubule binding			skin(1)	1		all_cancers(20;2.26e-25)|all_epithelial(15;2.1e-22)|Lung NSC(15;3.36e-17)|all_lung(15;1.04e-16)|Breast(32;0.000776)|Colorectal(260;0.0488)		all cancers(64;2.86e-06)|Epithelial(43;2.63e-05)|BRCA - Breast invasive adenocarcinoma(123;0.000949)		GCAGTGTGCGGAGAGCACCAC	0.562000													10	12					0	0	0.006214	0	0
Unknown	0	broad.mit.edu	37	15	23412198	23412198	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:23412198C>T	uc010uab.1	-	2	152	c.127G>A	c.(127-129)GGC>AGC	p.G43S		NM_001001413	NP_001001413			golgi autoantigen, golgin subfamily a, 6-like 1																		GGGCTAGTGCCATTATTTATT	0.542000													31	42					0	0	0.001512	0	0
C15orf2	23742	broad.mit.edu	37	15	24921102	24921102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:24921102C>T	uc001ywo.2	+	1	562	c.88C>T	c.(88-90)CGG>TGG	p.R30W		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	30					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		TCCCCTGTCCCGGGACGCCTC	0.706000													10	9					0	0	0.006214	0	0
C15orf2	23742	broad.mit.edu	37	15	24921709	24921709	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:24921709C>T	uc001ywo.2	+	1	1169	c.695C>T	c.(694-696)TCC>TTC	p.S232F		NM_018958	NP_061831	Q9NZP6	CO002_HUMAN	hypothetical protein LOC23742	232					cell differentiation|multicellular organismal development|spermatogenesis					ovary(2)|large_intestine(2)|skin(2)|kidney(1)|central_nervous_system(1)	8		all_cancers(20;2.14e-21)|all_epithelial(15;4.77e-19)|Lung NSC(15;1.43e-14)|all_lung(15;9.57e-14)|Breast(32;0.00086)		all cancers(64;3.19e-24)|Epithelial(43;2.67e-17)|GBM - Glioblastoma multiforme(186;7.36e-07)|BRCA - Breast invasive adenocarcinoma(123;0.000273)|Lung(196;0.229)		CCAGCGAGCTCCTGCTTGGAA	0.612000													21	31					0	0	0.001882	0	0
GABRG3	2567	broad.mit.edu	37	15	27773137	27773137	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:27773137C>T	uc001zbg.1	+	9	1287	c.1121C>T	c.(1120-1122)TCC>TTC	p.S374F		NM_033223	NP_150092	Q99928	GBRG3_HUMAN	gamma-aminobutyric acid (GABA) A receptor, gamma	374	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity				0		all_lung(180;4.58e-12)|Breast(32;0.000625)|Colorectal(260;0.235)		all cancers(64;3.15e-07)|Epithelial(43;1.17e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0261)		CAAGCCCCTTCCGTACGTATA	0.373000													3	3					0	0	0.004672	0	0
RPAP1	26015	broad.mit.edu	37	15	41829309	41829309	+	Silent	SNP	C	T	T	rs150252012		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:41829309C>T	uc001zod.2	-	2	139	c.15G>A	c.(13-15)CCG>CCA	p.P5P		NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	5						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		CCCCTGGCTTCGGTCTCGACA	0.577000													5	14					0	0	0.000602	0	0
EPB42	2038	broad.mit.edu	37	15	43489561	43489561	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:43489561A>T	uc001zra.3	-	13	2315	c.2015T>A	c.(2014-2016)ATG>AAG	p.M672K	EPB42_uc001zqz.3_Missense_Mutation_p.M339K|EPB42_uc010bde.2_3'UTR|EPB42_uc001zrb.3_Missense_Mutation_p.M702K|EPB42_uc010udm.1_Missense_Mutation_p.M594K	NM_001114134	NP_001107606	P16452	EPB42_HUMAN	erythrocyte membrane protein band 4.2 isoform 2	672					erythrocyte maturation|peptide cross-linking|regulation of cell shape	cytoplasm|cytoskeleton|plasma membrane	ATP binding|protein binding|protein-glutamine gamma-glutamyltransferase activity|structural constituent of cytoskeleton			ovary(2)	2		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;8.7e-07)		GTTCTGGAACATGTTGCAGTC	0.502000													16	17					0	0	0.006122	0	0
ADAL	161823	broad.mit.edu	37	15	43641199	43641199	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:43641199C>T	uc010udo.1	+	10	1221	c.647C>T	c.(646-648)TCC>TTC	p.S216F	ADAL_uc001zrh.2_Missense_Mutation_p.S243F|ADAL_uc001zri.1_Missense_Mutation_p.S128F	NM_001159280	NP_001152752	Q6DHV7	ADAL_HUMAN	adenosine deaminase-like isoform 1	243					adenosine catabolic process|inosine biosynthetic process|purine ribonucleoside monophosphate biosynthetic process		adenosine deaminase activity|metal ion binding				0		all_cancers(109;7.96e-11)|all_epithelial(112;2.96e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;9.31e-07)		GAGGGAGGATCCCTGGATCTG	0.488000													22	16					0	0	0.001523	0	0
ATP8B4	79895	broad.mit.edu	37	15	50168577	50168577	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:50168577C>T	uc001zxu.2	-	25	3067	c.2925G>A	c.(2923-2925)GGG>GGA	p.G975G	ATP8B4_uc010ber.2_Silent_p.G848G|ATP8B4_uc010ufd.1_Silent_p.G785G|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_5'UTR	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	975	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		TGTAAAAGGCCCCATAGGGGA	0.448000													8	2					0	0	0.003080	0	0
AP4E1	23431	broad.mit.edu	37	15	51217358	51217358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:51217358C>T	uc001zyx.1	+	5	514	c.484C>T	c.(484-486)CCC>TCC	p.P162S	AP4E1_uc010ufi.1_Missense_Mutation_p.P162S|AP4E1_uc010ufj.1_RNA|AP4E1_uc010ufk.1_RNA	NM_007347	NP_031373	Q9UPM8	AP4E1_HUMAN	adaptor-related protein complex 4, epsilon 1	162					intracellular protein transport|vesicle-mediated transport	COPI vesicle coat	binding|structural molecule activity				0				all cancers(107;0.000893)|GBM - Glioblastoma multiforme(94;0.00364)		CCAGATTTTCCCCTGCGAAAT	0.368000													18	13					0	0	0.004990	0	0
LEO1	123169	broad.mit.edu	37	15	52258202	52258202	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:52258202C>T	uc002abo.2	-	2	574	c.558G>A	c.(556-558)CAG>CAA	p.Q186Q	LEO1_uc010bfd.2_Silent_p.Q186Q	NM_138792	NP_620147	Q8WVC0	LEO1_HUMAN	Leo1, Paf1/RNA polymerase II complex component,	186	Asp-rich.				histone H2B ubiquitination|histone monoubiquitination|regulation of transcription, DNA-dependent|transcription, DNA-dependent	Cdc73/Paf1 complex	protein binding				0				all cancers(107;0.00264)		CATCTGTGTTCTGCATTTTCT	0.438000													97	157					0	0	0.003610	0	0
LDHAL6B	92483	broad.mit.edu	37	15	59500206	59500206	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:59500206A>G	uc002agb.2	+	1	1165	c.1067A>G	c.(1066-1068)AAG>AGG	p.K356R	MYO1E_uc002aga.2_Intron	NM_033195	NP_149972	Q9BYZ2	LDH6B_HUMAN	lactate dehydrogenase A-like 6B	356					glycolysis	cytoplasm	L-lactate dehydrogenase activity|protein binding				0					NADH(DB00157)	ATAAAGATAAAGCTGACCCCT	0.388000													38	79					0	0	0.002852	0	0
C2CD4A	145741	broad.mit.edu	37	15	62359860	62359860	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:62359860G>A	uc002ahf.3	+	2	189	c.48G>A	c.(46-48)CGG>CGA	p.R16R		NM_207322	NP_997205	Q8NCU7	C2C4A_HUMAN	nuclear localized factor 1	16						nucleus					0						GCCTTCGGCGGAGCGGAGACT	0.647000													10	10					0	0	0.006214	0	0
PIF1	80119	broad.mit.edu	37	15	65110472	65110472	+	Silent	SNP	G	A	A	rs144483518		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:65110472G>A	uc002ant.2	-	10	1578	c.1512C>T	c.(1510-1512)TTC>TTT	p.F504F	PIF1_uc002anr.2_Silent_p.F52F|PIF1_uc002ans.2_Silent_p.F195F|PIF1_uc010uiq.1_Silent_p.F504F	NM_025049	NP_079325	Q9H611	PIF1_HUMAN	DNA helicase homolog PIF1	504	Hydrolyzes ATP in the presence of both magnesium and single-stranded DNA; weak activity in the presence of RNA or double-stranded DNA; No unwinding activity.				negative regulation of telomerase activity|regulation of telomere maintenance|viral genome replication	nuclear chromosome, telomeric region	ATP binding|ATP-dependent 5'-3' DNA helicase activity|ATP-dependent 5'-3' DNA/RNA helicase activity|magnesium ion binding|single-stranded DNA-dependent ATP-dependent DNA helicase activity|telomeric DNA binding				0						CTTCTGCCTCGAACCCAACTA	0.582000													20	22					0	0	0.004656	0	0
SMAD6	4091	broad.mit.edu	37	15	67073794	67073794	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:67073794G>A	uc002aqf.2	+	4	2335	c.1412G>A	c.(1411-1413)GGC>GAC	p.G471D	SMAD6_uc010bhx.2_RNA|SMAD6_uc002aqg.2_Missense_Mutation_p.G210D	NM_005585	NP_005576	O43541	SMAD6_HUMAN	SMAD family member 6 isoform 1	471	MH2.			G->S: Loss of interaction with SMAD1 and BMP-receptor.	BMP signaling pathway|immune response|negative regulation of apoptosis|negative regulation of BMP signaling pathway|negative regulation of caspase activity|negative regulation of pathway-restricted SMAD protein phosphorylation|negative regulation of SMAD protein complex assembly|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of S phase of mitotic cell cycle|response to laminar fluid shear stress|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	cytosol|transcription factor complex	co-SMAD binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, inhibitory cytoplasmic mediator activity|type I activin receptor binding|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding	p.G471S(1)		skin(1)	1						TTCGCCAAGGGCTGGGGGCCC	0.706000													11	19					0	0	0.000673	0	0
MPI	4351	broad.mit.edu	37	15	75189490	75189490	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:75189490G>A	uc002azc.1	+	7	988	c.983G>A	c.(982-984)CGG>CAG	p.R328Q	MPI_uc002azd.1_Intron|MPI_uc010ulx.1_Missense_Mutation_p.R278Q|MPI_uc002aze.1_Missense_Mutation_p.R267Q	NM_002435	NP_002426	P34949	MPI_HUMAN	mannose-6- phosphate isomerase	328					dolichol-linked oligosaccharide biosynthetic process|GDP-mannose biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	cytosol	mannose-6-phosphate isomerase activity|zinc ion binding			ovary(2)	2						CTCCCAACACGGAGTCAGGAA	0.537000													35	58					0	0	0.006999	0	0
SIN3A	25942	broad.mit.edu	37	15	75687134	75687134	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:75687134C>T	uc002bai.2	-	14	2423	c.2164G>A	c.(2164-2166)GAG>AAG	p.E722K	SIN3A_uc002baj.2_Missense_Mutation_p.E722K|SIN3A_uc010uml.1_Missense_Mutation_p.E722K	NM_015477	NP_056292	Q96ST3	SIN3A_HUMAN	transcriptional co-repressor Sin3A	722	Interactions with HDAC1 and ARID4B.|Interaction with NCOR1 (By similarity).				blood coagulation|cellular lipid metabolic process|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus|Sin3 complex	protein binding			skin(3)|ovary(1)|lung(1)	5						TAGTATTTCTCATTTTGTTCT	0.438000													34	43					0	0	0.004289	0	0
DNAJA4	55466	broad.mit.edu	37	15	78562890	78562890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:78562890G>A	uc002bdj.1	+	2	301	c.184G>A	c.(184-186)GAT>AAT	p.D62N	DNAJA4_uc002bdi.2_Missense_Mutation_p.D91N|DNAJA4_uc002bdk.2_Missense_Mutation_p.D35N|DNAJA4_uc002bdl.2_5'UTR	NM_001130182	NP_001123654	Q8WW22	DNJA4_HUMAN	DnaJ (Hsp40) homolog, subfamily A, member 4	62	J.				protein folding|response to heat	membrane	ATP binding|heat shock protein binding|metal ion binding|unfolded protein binding			skin(1)	1						AAAGAAAAGGGATGTTTATGA	0.423000													64	86					0	0	0.003610	0	0
KIAA1024	23251	broad.mit.edu	37	15	79750337	79750337	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:79750337C>T	uc002bew.1	+	2	1923	c.1848C>T	c.(1846-1848)GTC>GTT	p.V616V	KIAA1024_uc010unk.1_Silent_p.V616V	NM_015206	NP_056021	Q9UPX6	K1024_HUMAN	hypothetical protein LOC23251	616						integral to membrane				pancreas(2)|ovary(1)|central_nervous_system(1)	4						TGTCGGGTGTCCGTGATGAAA	0.483000													21	19					0	0	0.001216	0	0
KIAA1199	57214	broad.mit.edu	37	15	81172080	81172080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:81172080G>A	uc002bfw.1	+	4	525	c.265G>A	c.(265-267)GAC>AAC	p.D89N	KIAA1199_uc010unn.1_Missense_Mutation_p.D89N	NM_018689	NP_061159	Q8WUJ3	K1199_HUMAN	KIAA1199 precursor	89	G8.									upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3						TAAAGACCACGACGAGCCGAT	0.517000													12	20					0	0	0.002450	0	0
AGBL1	123624	broad.mit.edu	37	15	86807702	86807702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:86807702C>T	uc002blz.1	+	10	1242	c.1162C>T	c.(1162-1164)CCT>TCT	p.P388S	AGBL1_uc002bma.1_Missense_Mutation_p.P119S|AGBL1_uc002bmb.1_Missense_Mutation_p.P82S	NM_152336	NP_689549	Q96MI9	CBPC4_HUMAN	ATP/GTP binding protein-like 1	388					C-terminal protein deglutamylation|protein side chain deglutamylation|proteolysis	cytosol	metallocarboxypeptidase activity|tubulin binding|zinc ion binding				0						CAAAAAAAATCCTGGAGTGAA	0.478000													10	10					0	0	0.006214	0	0
DET1	55070	broad.mit.edu	37	15	89074080	89074080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:89074080G>A	uc002bmr.2	-	2	1009	c.857C>T	c.(856-858)CCC>CTC	p.P286L	DET1_uc002bmp.3_RNA|DET1_uc010bnk.2_RNA|DET1_uc002bmq.2_Missense_Mutation_p.P297L	NM_001144074	NP_001137546	Q7L5Y6	DET1_HUMAN	de-etiolated 1 isoform 2	286						nucleus				lung(1)|pancreas(1)	2	Lung NSC(78;0.105)|all_lung(78;0.182)		BRCA - Breast invasive adenocarcinoma(143;0.188)			ATCCCTAAAGGGATTGGCCAT	0.542000													10	8					0	0	0.001855	0	0
GABARAPL3	23766	broad.mit.edu	37	15	90892289	90892289	+	RNA	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:90892289C>T	uc010uqf.1	-	1		c.391G>A				NR_028287				Homo sapiens GABA-A receptor-associated protein mRNA, complete cds.												0						CTAGGTACTTCCTCCTGTCCA	0.498000													6	17					0	0	0.001168	0	0
MCTP2	55784	broad.mit.edu	37	15	95022245	95022245	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:95022245G>A	uc002btj.2	+	22	2684	c.2619G>A	c.(2617-2619)AAG>AAA	p.K873K	MCTP2_uc010boj.2_Silent_p.K602K|MCTP2_uc010bok.2_Silent_p.K818K|MCTP2_uc002btl.2_Silent_p.K461K	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	873					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			CCCTGCGGAAGAAGCGCAGCG	0.527000													6	7					0	0	0.001984	0	0
ADAMTS17	170691	broad.mit.edu	37	15	100801778	100801778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr15:100801778C>T	uc002bvv.1	-	6	1016	c.937G>A	c.(937-939)GAG>AAG	p.E313K	ADAMTS17_uc002bvx.1_Missense_Mutation_p.E70K	NM_139057	NP_620688	Q8TE56	ATS17_HUMAN	ADAM metallopeptidase with thrombospondin type 1	313	Peptidase M12B.				proteolysis	intracellular|proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.00299)|all_lung(78;0.00457)|Melanoma(26;0.00571)		OV - Ovarian serous cystadenocarcinoma(32;0.0013)|LUSC - Lung squamous cell carcinoma(107;0.132)|Lung(145;0.161)	COAD - Colon adenocarcinoma(1;0.111)|all cancers(203;0.219)		CCATACTCCTCGTTCTGCCAG	0.557000													11	11					0	0	0.000978	0	0
RAB11FIP3	9727	broad.mit.edu	37	16	568989	568989	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:568989C>T	uc002chf.2	+	10	2026	c.1687C>T	c.(1687-1689)CCC>TCC	p.P563S	RAB11FIP3_uc010uuf.1_Missense_Mutation_p.P267S|RAB11FIP3_uc010uug.1_Missense_Mutation_p.P298S	NM_014700	NP_055515	O75154	RFIP3_HUMAN	rab11-family interacting protein 3 isoform 1	563	Potential.|ARF-binding domain (ABD).				cell cycle|cytokinesis|endocytic recycling|protein transport	centrosome|cleavage furrow|midbody|recycling endosome membrane	ADP-ribosylation factor binding|calcium ion binding|protein homodimerization activity|Rab GTPase binding				0		Hepatocellular(16;0.0218)				GTCCTGCACGCCCTGTCTGAA	0.612000													31	47					0	0	0.003271	0	0
MSLNL	401827	broad.mit.edu	37	16	830189	830190	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:830189_830190CC>TT	uc002cjz.1	-	3	811_812	c.811_812GG>AA	c.(811-813)GGG>AAG	p.G271K		NM_001025190	NP_001020361	Q96KJ4	MSLNL_HUMAN	mesothelin-like	516	Extracellular (Potential).				cell adhesion	integral to membrane				breast(3)|ovary(1)	4						TGTGAGGGTCCCGGCGGGAGCA	0.673000													13	18					0	0	0.004672	0	0
CACNA1H	8912	broad.mit.edu	37	16	1270611	1270611	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:1270611C>T	uc002cks.2	+	35	6927	c.6679C>T	c.(6679-6681)CCT>TCT	p.P2227S	CACNA1H_uc002ckt.2_Missense_Mutation_p.P2221S|CACNA1H_uc002cku.2_Missense_Mutation_p.P922S|CACNA1H_uc010brj.2_Missense_Mutation_p.P938S|CACNA1H_uc002ckv.2_Missense_Mutation_p.P916S	NM_021098	NP_066921	O95180	CAC1H_HUMAN	calcium channel, voltage-dependent, T type,	2227	Cytoplasmic (Potential).				aldosterone biosynthetic process|axon guidance|cellular response to hormone stimulus|cellular response to potassium ion|cortisol biosynthetic process|muscle contraction|myoblast fusion|positive regulation of acrosome reaction|regulation of heart contraction	voltage-gated calcium channel complex	low voltage-gated calcium channel activity			breast(2)	2		Hepatocellular(780;0.00369)			Flunarizine(DB04841)|Mibefradil(DB01388)	TGAGGCCACGCCTCACAGGGA	0.751000													5	7					0	0	0.000602	0	0
OR1F1	4992	broad.mit.edu	37	16	3254666	3254666	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:3254666C>T	uc010uwu.1	+	1	420	c.420C>T	c.(418-420)CTC>CTT	p.L140L		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	140	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CCCATCAGCTCTGTGCCCTGC	0.527000													36	53					0	0	0.005524	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857935	9857935	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:9857935C>T	uc002czo.3	-	13	4014	c.3466G>A	c.(3466-3468)GAA>AAA	p.E1156K	GRIN2A_uc010uym.1_Missense_Mutation_p.E1156K|GRIN2A_uc010uyn.1_Missense_Mutation_p.E999K|GRIN2A_uc002czr.3_Missense_Mutation_p.E1156K	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1156	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	CGGAAGTTTTCACTGGGATCC	0.527000													15	26					0	0	0.003163	0	0
GRIN2A	2903	broad.mit.edu	37	16	9858671	9858671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:9858671C>T	uc002czo.3	-	13	3278	c.2730G>A	c.(2728-2730)ATG>ATA	p.M910I	GRIN2A_uc010uym.1_Missense_Mutation_p.M910I|GRIN2A_uc010uyn.1_Missense_Mutation_p.M753I|GRIN2A_uc002czr.3_Missense_Mutation_p.M910I	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	910	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TTGAGGAGTTCATGTTGGACA	0.443000													30	28					0	0	0.002096	0	0
TNP2	7142	broad.mit.edu	37	16	11362926	11362926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:11362926G>A	uc002das.2	-	1	235	c.194C>T	c.(193-195)TCA>TTA	p.S65L	C16orf75_uc002daq.1_Intron	NM_005425	NP_005416	Q05952	STP2_HUMAN	transition protein 2 (during histone to	65					cell differentiation|multicellular organismal development|spermatogenesis	nucleosome|nucleus	DNA binding				0						GTGGCCGGATGAGCTGTGGGC	0.622000													76	116					0	0	0.003610	0	0
RUNDC2A	84127	broad.mit.edu	37	16	12146074	12146074	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:12146074C>T	uc002dbw.1	+	8	1181	c.1119C>T	c.(1117-1119)CCC>CCT	p.P373P	SNX29_uc002dby.3_5'UTR	NM_032167	NP_115543	Q9HA26	RUN2A_HUMAN	RUN domain containing 2A	373										ovary(1)	1						CGGAGTCGCCCGAGAAGTAAG	0.279000			T	CIITA	PMBL|Hodgkin Lymphona|								16	19					0	0	0.003163	0	0
PARN	5073	broad.mit.edu	37	16	14711453	14711453	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:14711453G>A	uc010uzd.1	-	6	524	c.382C>T	c.(382-384)CGA>TGA	p.R128*	PARN_uc010uzc.1_Nonsense_Mutation_p.R67*|PARN_uc010uze.1_Nonsense_Mutation_p.R82*|PARN_uc010uzf.1_Intron|PARN_uc010uzg.1_RNA	NM_002582	NP_002573	O95453	PARN_HUMAN	poly(A)-specific ribonuclease (deadenylation	128					female gamete generation|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|RNA modification	cytosol|nucleolus	metal ion binding|mRNA 3'-UTR binding|nucleotide binding|poly(A)-specific ribonuclease activity|protein binding			ovary(2)	2						TTACCATTTCGAAAAACTTTA	0.358000													35	44					0	0	0.004878	0	0
TMC7	79905	broad.mit.edu	37	16	19034496	19034496	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:19034496C>T	uc002dfq.2	+	5	820	c.690C>T	c.(688-690)ATC>ATT	p.I230I	TMC7_uc010vao.1_Silent_p.I230I|TMC7_uc002dfp.2_Silent_p.I230I|TMC7_uc010vap.1_Silent_p.I120I	NM_024847	NP_079123	Q7Z402	TMC7_HUMAN	transmembrane channel-like 7 isoform a	230	Helical; (Potential).					integral to membrane				skin(2)|ovary(1)	3						ACAGTTATATCATAGACTTGC	0.318000													20	32					0	0	0.001523	0	0
UMOD	7369	broad.mit.edu	37	16	20357650	20357650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:20357650G>A	uc002dgz.2	-	5	1109	c.980C>T	c.(979-981)TCC>TTC	p.S327F	UMOD_uc002dha.2_Missense_Mutation_p.S327F|UMOD_uc002dhb.2_Missense_Mutation_p.S360F	NM_003361	NP_003352	P07911	UROM_HUMAN	uromodulin precursor	327					cellular defense response|negative regulation of cell proliferation	anchored to membrane|apical plasma membrane|basolateral plasma membrane|cilium membrane|extrinsic to membrane|primary cilium|spindle pole	calcium ion binding			ovary(1)|skin(1)	2						CTCCAGGAGGGAGATATCTGA	0.582000													40	36					0	0	0.002522	0	0
ACSM2B	348158	broad.mit.edu	37	16	20554463	20554463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:20554463G>A	uc002dhj.3	-	12	1613	c.1403C>T	c.(1402-1404)TCC>TTC	p.S468F	ACSM2B_uc002dhk.3_Missense_Mutation_p.S468F|ACSM2B_uc010bwf.1_Missense_Mutation_p.S468F	NM_182617	NP_872423	Q68CK6	ACS2B_HUMAN	acyl-CoA synthetase medium-chain family member	468					fatty acid metabolic process|xenobiotic metabolic process	mitochondrial matrix	ATP binding|butyrate-CoA ligase activity|CoA-ligase activity|metal ion binding			skin(3)|ovary(1)|central_nervous_system(1)	5						TCACCCGCTGGAGTTAATGAT	0.512000													32	99					0	0	0.003271	0	0
PRKCB	5579	broad.mit.edu	37	16	24196828	24196829	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:24196828_24196829GG>TA	uc002dmd.2	+	15	1859_1860	c.1662_1663GG>TA	c.(1660-1665)ATGGAA>ATTAAA	p.554_555ME>IK	PRKCB_uc002dme.2_Missense_Mutation_p.554_555ME>IK	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	554_555	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	AATCCATCATGGAACACAACGT	0.480000													9	20					0	0	0.004672	0	0
PRKCB	5579	broad.mit.edu	37	16	24196848	24196848	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:24196848C>A	uc002dmd.2	+	15	1879	c.1682C>A	c.(1681-1683)CCC>CAC	p.P561H	PRKCB_uc002dme.2_Missense_Mutation_p.P561H	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	561	Protein kinase.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	GTAGCCTATCCCAAGTCTATG	0.413000													8	20					9.70103e-10	2.10982e-09	0.000673	1	0
ZNF423	23090	broad.mit.edu	37	16	49671485	49671485	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:49671485G>A	uc002efs.2	-	5	1876	c.1578C>T	c.(1576-1578)TTC>TTT	p.F526F	ZNF423_uc010vgn.1_Silent_p.F409F	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	526	C2H2-type 12.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				ACTCAGTAAGGAAACCCATGG	0.592000													17	24					0	0	0.004990	0	0
TOX3	27324	broad.mit.edu	37	16	52497973	52497973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:52497973G>A	uc002egw.2	-	3	452	c.281C>T	c.(280-282)CCA>CTA	p.P94L	TOX3_uc010vgt.1_Missense_Mutation_p.P89L|TOX3_uc010vgu.1_Missense_Mutation_p.P94L	NM_001080430	NP_001073899	O15405	TOX3_HUMAN	TOX high mobility group box family member 3	94					apoptosis|negative regulation of neuron apoptosis|positive regulation of anti-apoptosis|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	chromatin binding|estrogen response element binding|phosphoprotein binding|protein homodimerization activity				0						GGAAGGCAATGGATCGCTGAG	0.532000													22	18					0	0	0.001882	0	0
ZDHHC1	29800	broad.mit.edu	37	16	67440207	67440207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:67440207G>A	uc010vjm.1	-	3	452	c.148C>T	c.(148-150)CCG>TCG	p.P50S		NM_013304	NP_037436	Q8WTX9	ZDHC1_HUMAN	zinc finger, DHHC-type containing 1	50						integral to membrane	DNA binding|zinc ion binding				0		Ovarian(137;0.223)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0178)|all cancers(182;5.71e-53)|Epithelial(162;4.73e-52)|OV - Ovarian serous cystadenocarcinoma(108;1.53e-29)|Kidney(780;4.37e-05)|BRCA - Breast invasive adenocarcinoma(181;5.8e-05)|GBM - Glioblastoma multiforme(240;0.0022)		ATCTGGAGCGGGTGAGGGGGC	0.652000													5	9					0	0	0.000602	0	0
NUTF2	10204	broad.mit.edu	37	16	67902281	67902281	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:67902281C>T	uc002eup.2	+	3	237	c.138C>T	c.(136-138)TTC>TTT	p.F46F	NUTF2_uc010vkf.1_Silent_p.F46F|NUTF2_uc002euq.3_5'Flank	NM_005796	NP_005787	P61970	NTF2_HUMAN	nuclear transport factor 2	46	NTF2.				protein transport	cytosol|nuclear pore	protein binding|transporter activity				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00443)|Epithelial(162;0.0199)|all cancers(182;0.129)		GACAACAGTTCCAGGGGAAAG	0.542000													32	41					0	0	0.006230	0	0
SMPD3	55512	broad.mit.edu	37	16	68398948	68398948	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:68398948G>A	uc002ewa.2	-	4	1793	c.1371C>T	c.(1369-1371)ATC>ATT	p.I457I	SMPD3_uc010cfe.2_Silent_p.I457I|SMPD3_uc010vlh.1_Silent_p.I457I	NM_018667	NP_061137	Q9NY59	NSMA2_HUMAN	neutral sphingomyelin phosphodiesterase 3	457	Lumenal (Potential).				cell cycle|multicellular organismal development|sphingomyelin catabolic process	Golgi membrane|integral to membrane|plasma membrane	metal ion binding|sphingomyelin phosphodiesterase activity			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0184)|Epithelial(162;0.0785)	Phosphatidylserine(DB00144)	GTGTGCAGGCGATGTACCCGA	0.632000													17	28					0	0	0.002299	0	0
GEMIN4	50628	broad.mit.edu	37	17	648573	648573	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:648573G>A	uc002frs.1	-	2	2829	c.2710C>T	c.(2710-2712)CCC>TCC	p.P904S		NM_015721	NP_056536	P57678	GEMI4_HUMAN	gemin 4	904					rRNA processing|spliceosomal snRNP assembly	Cajal body|cytosol|nucleolus|small nuclear ribonucleoprotein complex|spliceosomal complex	protein binding			ovary(2)|kidney(1)|skin(1)	4		Myeloproliferative disorder(207;0.204)		UCEC - Uterine corpus endometrioid carcinoma (25;0.022)		TGGGCAAAGGGCTTCAGGTTG	0.537000													23	2					0	0	0.002780	0	0
SHPK	23729	broad.mit.edu	37	17	3527480	3527480	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:3527480C>T	uc002fvz.1	-	3	459	c.356G>A	c.(355-357)CGA>CAA	p.R119Q		NM_013276	NP_037408	Q9UHJ6	SHPK_HUMAN	carbohydrate kinase-like	119					carbohydrate metabolic process	cytoplasm	ATP binding|sedoheptulokinase activity			ovary(1)	1				COAD - Colon adenocarcinoma(5;0.0828)		GCTAACAGCTCGGGGCTCGAA	0.562000													15	5					0	0	0.006122	0	0
PELP1	27043	broad.mit.edu	37	17	4575297	4575297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:4575297G>A	uc002fyi.3	-	16	3215	c.2989C>T	c.(2989-2991)CCA>TCA	p.P997S	PELP1_uc010vsf.1_Intron	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	997	Glu-rich.|Pro-rich.				transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						TCGGGTTCTGGCTGCACCTTT	0.652000													8	0					0	0	0.006214	0	0
NLRP1	22861	broad.mit.edu	37	17	5462329	5462329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:5462329G>A	uc002gci.2	-	4	2242	c.1687C>T	c.(1687-1689)CCA>TCA	p.P563S	NLRP1_uc002gcg.1_Missense_Mutation_p.P563S|NLRP1_uc002gck.2_Missense_Mutation_p.P563S|NLRP1_uc002gcj.2_Missense_Mutation_p.P563S|NLRP1_uc002gcl.2_Missense_Mutation_p.P563S|NLRP1_uc002gch.3_Missense_Mutation_p.P563S|NLRP1_uc010clh.2_Missense_Mutation_p.P563S	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	563	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				GGTCCCAATGGCTGAGCTTGG	0.532000													52	11					0	0	0.003610	0	0
NLRP1	22861	broad.mit.edu	37	17	5463016	5463016	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:5463016C>T	uc002gci.2	-	4	1555	c.1000G>A	c.(1000-1002)GGG>AGG	p.G334R	NLRP1_uc002gcg.1_Missense_Mutation_p.G334R|NLRP1_uc002gck.2_Missense_Mutation_p.G334R|NLRP1_uc002gcj.2_Missense_Mutation_p.G334R|NLRP1_uc002gcl.2_Missense_Mutation_p.G334R|NLRP1_uc002gch.3_Missense_Mutation_p.G334R|NLRP1_uc010clh.2_Missense_Mutation_p.G334R	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	334	NACHT.|ATP (Potential).				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				CCAGCAGCCCCCTGCAGTATG	0.532000													99	17					0	0	0.003610	0	0
C17orf74	201243	broad.mit.edu	37	17	7330297	7330298	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:7330297_7330298CC>TT	uc002ggw.2	+	3	1060_1061	c.987_988CC>TT	c.(985-990)TCCCGG>TCTTGG	p.R330W	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	330						integral to membrane					0		Prostate(122;0.157)				CCTCGGTGTCCCGGAACGCCCG	0.693000													8	3					0	0	0.004672	0	0
TP53	7157	broad.mit.edu	37	17	7578502	7578502	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:7578502A>C	uc002gim.2	-	5	622	c.428T>G	c.(427-429)GTG>GGG	p.V143G	TP53_uc002gig.1_Missense_Mutation_p.V143G|TP53_uc002gih.2_Missense_Mutation_p.V143G|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.V11G|TP53_uc010cng.1_Missense_Mutation_p.V11G|TP53_uc002gii.1_Missense_Mutation_p.V11G|TP53_uc010cnh.1_Missense_Mutation_p.V143G|TP53_uc010cni.1_Missense_Mutation_p.V143G|TP53_uc002gij.2_Missense_Mutation_p.V143G|TP53_uc010cnj.1_RNA|TP53_uc002gin.2_Missense_Mutation_p.V50G|TP53_uc002gio.2_Missense_Mutation_p.V11G|TP53_uc010vug.1_Missense_Mutation_p.V104G	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	143	Required for interaction with FBXO42.||Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		V -> G (in sporadic cancers; somatic mutation).|V -> A (in sporadic cancers; somatic mutation; strong DNA binding ability at 32.5 degrees Celsius; strong reduction of transcriptional activity at 37.5 degrees Celsius).|V -> E (in sporadic cancers; somatic mutation).|V -> M (in sporadic cancers; somatic mutation).|V -> L (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.V143M(16)|p.V143A(15)|p.0?(7)|p.V143E(4)|p.V143L(4)|p.V143V(2)|p.V143fs*27(2)|p.L137_W146del10(1)|p.V143fs*29(1)|p.P142_Q144delPVQ(1)|p.K139fs*4(1)|p.V11A(1)|p.V50A(1)|p.A138_V143delAKTCPV(1)|p.V143G(1)|p.V143_S149del(1)|p.C141fs*5(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		CCACAGCTGCACAGGGCAGGT	0.587000		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			30	2					0	0	0.001512	0	0
GLP2R	9340	broad.mit.edu	37	17	9774075	9774075	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:9774075C>T	uc002gmd.1	+	10	1068	c.1068C>T	c.(1066-1068)TTC>TTT	p.F356F		NM_004246	NP_004237	O95838	GLP2R_HUMAN	glucagon-like peptide 2 receptor precursor	356	Helical; Name=5; (Potential).				G-protein signaling, coupled to cAMP nucleotide second messenger|positive regulation of cell proliferation	integral to membrane|plasma membrane				lung(2)|ovary(1)	3					Glucagon recombinant(DB00040)	TCAATTTCTTCATCTTCCTGA	0.418000													90	160					0	0	0.003610	0	0
MYH8	4626	broad.mit.edu	37	17	10304925	10304925	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:10304925C>T	uc002gmm.2	-	23	2961	c.2866G>A	c.(2866-2868)GAC>AAC	p.D956N	uc002gml.1_Intron	NM_002472	NP_002463	P13535	MYH8_HUMAN	myosin, heavy chain 8, skeletal muscle,	956	Potential.				muscle filament sliding	cytosol|muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity|structural constituent of muscle			skin(6)|ovary(3)|breast(2)	11						TCATCAATGTCTTTCTTGAGT	0.438000									Trismus-Pseudocamptodactyly_Syndrome_with_Cardiac_Myxoma_and_Freckling				159	219					0	0	0.003610	0	0
MYH1	4619	broad.mit.edu	37	17	10395837	10395837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:10395837C>T	uc002gmo.2	-	40	5810	c.5716G>A	c.(5716-5718)GAG>AAG	p.E1906K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1906	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCCTCCAGCTCGTGCTGGATC	0.483000													45	51					0	0	0.003610	0	0
MYH3	4621	broad.mit.edu	37	17	10542614	10542614	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:10542614C>T	uc002gmq.1	-	23	3179	c.3102_splice	c.e23+1	p.D1034_splice		NM_002470	NP_002461	P11055	MYH3_HUMAN	myosin, heavy chain 3, skeletal muscle,						muscle filament sliding|muscle organ development	cytosol|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(4)|central_nervous_system(2)|pancreas(1)	7						TATTTACTTACGTCTTCCACT	0.353000													29	33					0	0	0.006320	0	0
VTN	7448	broad.mit.edu	37	17	26696364	26696365	+	Missense_Mutation	DNP	GG	AT	AT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:26696364_26696365GG>AT	uc002hbc.2	-	4	763_764	c.614_615CC>AT	c.(613-615)CCC>CAT	p.P205H	SARM1_uc010wah.1_Intron|SEBOX_uc010crk.1_5'Flank|SARM1_uc010waj.1_Intron|SARM1_uc010crl.1_5'Flank	NM_000638	NP_000629	P04004	VTNC_HUMAN	vitronectin precursor	205					cell adhesion mediated by integrin|immune response|negative regulation of endopeptidase activity|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of protein binding|positive regulation of receptor-mediated endocytosis|positive regulation of smooth muscle cell migration|positive regulation of vascular endothelial growth factor receptor signaling pathway|smooth muscle cell-matrix adhesion	alphav-beta3 integrin-vitronectin complex|extracellular space	heparin binding|integrin binding|scavenger receptor activity			ovary(1)|kidney(1)	2	all_lung(13;0.000533)|Lung NSC(42;0.00171)			UCEC - Uterine corpus endometrioid carcinoma (53;0.153)	Urokinase(DB00013)	CGGCATCGATGGGGCCCTCGAT	0.584000													19	30					0	0	0.004672	0	0
KIAA0100	9703	broad.mit.edu	37	17	26960076	26960076	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:26960076C>A	uc002hbu.2	-	20	3788	c.3689G>T	c.(3688-3690)CGG>CTG	p.R1230L		NM_014680	NP_055495	Q14667	K0100_HUMAN	hypothetical protein LOC9703 precursor	1230						extracellular region				ovary(2)|breast(1)|skin(1)	4	Lung NSC(42;0.00431)					CTCTGGGGCCCGCAGAGTGAC	0.587000													5	21					0.00116845	0.00252215	0.001168	1	0
GIT1	28964	broad.mit.edu	37	17	27903413	27903414	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:27903413_27903414GG>AA	uc002hef.2	-	14	1649_1650	c.1435_1436CC>TT	c.(1435-1437)CCC>TTC	p.P479F	GIT1_uc002heg.2_Missense_Mutation_p.P488F|GIT1_uc010wbg.1_Missense_Mutation_p.P488F|GIT1_uc010csb.1_Missense_Mutation_p.P479F	NM_014030	NP_054749	Q9Y2X7	GIT1_HUMAN	G protein-coupled receptor kinase interactor 1	479					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	cytoplasm|focal adhesion	ARF GTPase activator activity|protein binding|zinc ion binding				0				READ - Rectum adenocarcinoma(3;0.0419)|Colorectal(3;0.069)		TGGAGGTGTGGGCACCGGCCCT	0.649000													46	63					0	0	0.004672	0	0
C17orf42	79736	broad.mit.edu	37	17	29226322	29226322	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:29226322G>A	uc002hfu.2	-	4	1018	c.948C>T	c.(946-948)TTC>TTT	p.F316F	C17orf42_uc002hfv.2_RNA	NM_024683	NP_078959	Q96QE5	TEFM_HUMAN	hypothetical protein LOC79736	316					oxidative phosphorylation|regulation of transcription, DNA-dependent|transcription from mitochondrial promoter	mitochondrial nucleoid|ribonucleoprotein complex	DNA polymerase processivity factor activity|nucleic acid binding|protein binding			ovary(1)	1		all_cancers(10;4.64e-07)|all_hematologic(16;0.014)|Acute lymphoblastic leukemia(14;0.0236)|Myeloproliferative disorder(56;0.0255)				CTGATGGGAAGAACACCCGAG	0.393000													53	51					0	0	0.003610	0	0
SLFN12L	342615	broad.mit.edu	37	17	33849309	33849309	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:33849309C>T	uc002hjn.2	-	2	969	c.90G>A	c.(88-90)AGG>AGA	p.R30R		NM_001145027	NP_001138499			schlafen family member 12-like											ovary(1)	1						TGATGAAATTCCTCAGAAACT	0.383000													6	11					0	0	0.001168	0	0
IKZF3	22806	broad.mit.edu	37	17	37922133	37922133	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:37922133G>A	uc002hsu.2	-	8	1502	c.1440C>T	c.(1438-1440)TTC>TTT	p.F480F	IKZF3_uc002htd.2_Silent_p.F446F|IKZF3_uc010cwd.2_Silent_p.F337F|IKZF3_uc002hsv.2_Silent_p.F407F|IKZF3_uc010cwe.2_Silent_p.F346F|IKZF3_uc010cwf.2_Silent_p.F298F|IKZF3_uc010cwg.2_Silent_p.F259F|IKZF3_uc002hsw.2_Silent_p.F441F|IKZF3_uc002hsx.2_Silent_p.F424F|IKZF3_uc002hsy.2_Silent_p.F441F|IKZF3_uc002hsz.2_Silent_p.F385F|IKZF3_uc002hta.2_Silent_p.F402F|IKZF3_uc002htb.2_RNA|IKZF3_uc010cwh.2_Silent_p.F393F|IKZF3_uc002htc.2_Silent_p.F233F|IKZF3_uc010wel.1_Silent_p.F233F	NM_012481	NP_036613	Q9UKT9	IKZF3_HUMAN	aiolos isoform 1	480	C2H2-type 6; atypical.				B cell activation|mesoderm development|regulation of transcription from RNA polymerase II promoter	cytoplasm|nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(2)|kidney(2)|skin(2)	6	Breast(7;4.5e-103)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			TGTTACACTCGAAAGGGTCAC	0.517000													38	42					0	0	0.006999	0	0
KRT10	3858	broad.mit.edu	37	17	38978704	38978704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:38978704C>T	uc002hvi.2	-	1	160	c.134G>A	c.(133-135)GGA>GAA	p.G45E	KRT10_uc010cxd.2_5'Flank|TMEM99_uc002hvj.1_Intron	NM_000421	NP_000412	P13645	K1C10_HUMAN	keratin 10	45	Head.|Gly-rich.				epidermis development		protein binding|structural constituent of epidermis				0		Breast(137;0.000301)				GCTAAATCCTCCACCAAGGGA	0.438000													14	19					0	0	0.001855	0	0
KRTAP4-3	85290	broad.mit.edu	37	17	39324368	39324368	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:39324368G>A	uc010cxl.2	-	1	57	c.57C>T	c.(55-57)CTC>CTT	p.L19L		NM_033187	NP_149443	Q9BYR4	KRA43_HUMAN	keratin associated protein 4-3	19						keratin filament					0		Breast(137;0.000496)	STAD - Stomach adenocarcinoma(17;0.000449)			TCTCCTGGCCGAGACCTTGAC	0.498000													25	21					0	0	0.006320	0	0
KRT36	8689	broad.mit.edu	37	17	39642654	39642654	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:39642654C>T	uc002hwt.2	-	7	1378	c.1378G>A	c.(1378-1380)GAG>AAG	p.E460K		NM_003771	NP_003762	O76013	KRT36_HUMAN	keratin 36	460	Tail.					intermediate filament	protein binding|structural constituent of epidermis				0		Breast(137;0.000286)				TGCACGTGCTCCCTGGAGGAG	0.642000													12	13					0	0	0.002450	0	0
WNK4	65266	broad.mit.edu	37	17	40932784	40932784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:40932784G>A	uc002ibj.2	+	1	89	c.68G>A	c.(67-69)CGG>CAG	p.R23Q	WNK4_uc010wgx.1_5'UTR|WNK4_uc002ibk.1_5'Flank	NM_032387	NP_115763	Q96J92	WNK4_HUMAN	WNK lysine deficient protein kinase 4	23					intracellular protein kinase cascade	tight junction	ATP binding|protein serine/threonine kinase activity			ovary(3)|skin(3)|stomach(1)	7		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0749)		CTGGCCCTGCGGCCCCCGCCT	0.726000													20	16					0	0	0.002299	0	0
BRCA1	672	broad.mit.edu	37	17	41246344	41246344	+	Missense_Mutation	SNP	C	T	T	rs80357859		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:41246344C>T	uc002icq.2	-	10	1436	c.1204G>A	c.(1204-1206)GAG>AAG	p.E402K	BRCA1_uc010whp.1_Intron|BRCA1_uc010whl.1_Intron|BRCA1_uc010whm.1_Intron|BRCA1_uc002icp.3_Missense_Mutation_p.E331K|BRCA1_uc002icu.2_Intron|BRCA1_uc010cyx.2_Missense_Mutation_p.E355K|BRCA1_uc002ict.2_Missense_Mutation_p.E402K|BRCA1_uc010whn.1_Intron|BRCA1_uc010who.1_Intron|BRCA1_uc010whq.1_Intron|BRCA1_uc002idc.1_Intron|BRCA1_uc010whr.1_Intron|BRCA1_uc002idd.2_Missense_Mutation_p.E402K|BRCA1_uc002ide.1_Missense_Mutation_p.E233K|BRCA1_uc010cyy.1_Missense_Mutation_p.E402K|BRCA1_uc010whs.1_Missense_Mutation_p.E402K|BRCA1_uc010cyz.2_Missense_Mutation_p.E355K|BRCA1_uc010cza.2_Missense_Mutation_p.E376K|BRCA1_uc010wht.1_Missense_Mutation_p.E106K	NM_007294	NP_009225	P38398	BRCA1_HUMAN	breast cancer 1, early onset isoform 1	402					androgen receptor signaling pathway|apoptosis|cellular response to indole-3-methanol|chromosome segregation|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|DNA damage response, signal transduction resulting in induction of apoptosis|double-strand break repair via homologous recombination|fatty acid biosynthetic process|G2/M transition DNA damage checkpoint|negative regulation of centriole replication|negative regulation of fatty acid biosynthetic process|negative regulation of histone H3-K9 methylation|negative regulation of transcription, DNA-dependent|positive regulation of cell cycle arrest|positive regulation of DNA repair|positive regulation of histone acetylation|positive regulation of histone H3-K4 methylation|positive regulation of histone H4-K20 methylation|positive regulation of protein ubiquitination|positive regulation of transcription from RNA polymerase II promoter|postreplication repair|protein autoubiquitination|protein K6-linked ubiquitination|regulation of cell motility|regulation of cell proliferation|regulation of transcription from RNA polymerase III promoter|response to estrogen stimulus|response to ionizing radiation|substrate adhesion-dependent cell spreading	BRCA1-A complex|BRCA1-BARD1 complex|gamma-tubulin ring complex|nucleoplasm|plasma membrane|ribonucleoprotein complex|ruffle	androgen receptor binding|identical protein binding|protein binding|RNA binding|transcription coactivator activity|transcription regulatory region DNA binding|tubulin binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(24)|breast(21)|lung(4)|central_nervous_system(1)|endometrium(1)|urinary_tract(1)	52		Breast(137;0.000717)		BRCA - Breast invasive adenocarcinoma(366;0.126)		GATTCAGACTCCCCATCATGT	0.388000			D|Mis|N|F|S		ovarian	breast|ovarian		Homologous_recombination	Hereditary_Breast-Ovarian_Cancer_BRCA1_type	TCGA Ovarian(2;0.000030)			27	34					0	0	0.005443	0	0
Unknown	0	broad.mit.edu	37	17	45127419	45127419	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:45127419C>T	uc010wkj.1	+	2	971	c.617C>T	c.(616-618)CCT>CTT	p.P206L	uc010wkl.1_RNA					SubName: Full=Putative uncharacterized protein LRRC37A3;																		GCAAACAGGCCTCCGTTCTCT	0.468000													8	58					0	0	0.001368	0	0
NFE2L1	4779	broad.mit.edu	37	17	46136446	46136446	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:46136446G>T	uc002imz.3	+	6	2413	c.1762G>T	c.(1762-1764)GAC>TAC	p.D588Y	NFE2L1_uc002ina.3_Missense_Mutation_p.D558Y|NFE2L1_uc002inb.3_Missense_Mutation_p.D558Y|NFE2L1_uc010wle.1_Missense_Mutation_p.D400Y|NFE2L1_uc010wlf.1_Missense_Mutation_p.D432Y	NM_003204	NP_003195	Q14494	NF2L1_HUMAN	nuclear factor erythroid 2-like 1	588					anatomical structure morphogenesis|heme biosynthetic process|inflammatory response|transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity			skin(1)	1						GGACTCAGCCGACCTGCCACC	0.612000													26	28					8.24728e-16	1.81189e-15	0.004656	1	0
BCAS3	54828	broad.mit.edu	37	17	59067552	59067552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:59067552C>T	uc002iyv.3	+	15	1551	c.1442C>T	c.(1441-1443)CCT>CTT	p.P481L	BCAS3_uc010wow.1_Missense_Mutation_p.P268L|BCAS3_uc002iyu.3_Missense_Mutation_p.P481L|BCAS3_uc002iyw.3_Missense_Mutation_p.P477L|BCAS3_uc002iyx.1_Missense_Mutation_p.P296L|BCAS3_uc002iyy.3_Missense_Mutation_p.P252L|BCAS3_uc002iyz.3_Missense_Mutation_p.P35L|BCAS3_uc002iza.3_Missense_Mutation_p.P35L	NM_001099432	NP_001092902	Q9H6U6	BCAS3_HUMAN	breast carcinoma amplified sequence 3 isoform 1	481						nucleus				ovary(2)|central_nervous_system(2)|skin(1)	5			BRCA - Breast invasive adenocarcinoma(1;3.11e-12)|Epithelial(12;8.2e-07)|all cancers(12;5.33e-06)			CGCTGTAGCCCTGTTCCAGGT	0.473000													26	13					0	0	0.002836	0	0
ABCA6	23460	broad.mit.edu	37	17	67083503	67083503	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:67083503G>A	uc002jhw.1	-	29	3985	c.3810C>T	c.(3808-3810)ATC>ATT	p.I1270I		NM_080284	NP_525023	Q8N139	ABCA6_HUMAN	ATP-binding cassette, sub-family A, member 6	1270					transport	integral to membrane	ATP binding|ATPase activity			upper_aerodigestive_tract(2)|large_intestine(2)|ovary(2)|skin(1)	7	Breast(10;5.65e-12)					CCTCATCTAAGATTGAAGTGG	0.373000													33	76					0	0	0.002836	0	0
SDK2	54549	broad.mit.edu	37	17	71364685	71364685	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:71364685C>T	uc010dfm.2	-	37	5028	c.5028G>A	c.(5026-5028)AAG>AAA	p.K1676K	SDK2_uc002jjt.3_Silent_p.K816K|SDK2_uc010dfn.2_Silent_p.K1355K	NM_001144952	NP_001138424	Q58EX2	SDK2_HUMAN	sidekick 2	1676	Fibronectin type-III 11.|Extracellular (Potential).				cell adhesion	integral to membrane				ovary(2)	2						GGAAAAGCGTCTTCACTCGCT	0.587000													20	13					0	0	0.001216	0	0
LLGL2	3993	broad.mit.edu	37	17	73552144	73552144	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:73552144C>T	uc002joh.2	+	3	247	c.93C>T	c.(91-93)TTC>TTT	p.F31F	LLGL2_uc002jog.1_Silent_p.F31F|LLGL2_uc010dgf.1_Silent_p.F31F|LLGL2_uc002joi.2_Silent_p.F31F|LLGL2_uc010dgg.1_Silent_p.F31F|LLGL2_uc002joj.2_5'Flank	NM_001031803	NP_001026973	Q6P1M3	L2GL2_HUMAN	lethal giant larvae homolog 2 isoform c	31					cell cycle|cell division|exocytosis|regulation of establishment or maintenance of cell polarity	cytoplasm|intracellular membrane-bounded organelle	PDZ domain binding			ovary(2)	2	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;1.8e-07)|Epithelial(20;1.38e-06)|Lung(188;0.0696)|LUSC - Lung squamous cell carcinoma(166;0.112)			AGCATGGCTTCCCGCACCAGC	0.672000													30	21					0	0	0.004289	0	0
ITGB4	3691	broad.mit.edu	37	17	73745123	73745123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:73745123C>T	uc002jpg.2	+	27	3500	c.3313C>T	c.(3313-3315)CCA>TCA	p.P1105S	ITGB4_uc002jph.2_Missense_Mutation_p.P1105S|ITGB4_uc002jpi.3_Missense_Mutation_p.P1105S|ITGB4_uc002jpj.2_Missense_Mutation_p.P1105S	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	1105	Cytoplasmic (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			CATCAGGGACCCAGGTAGGCA	0.542000													12	16					0	0	0.001368	0	0
UNC13D	201294	broad.mit.edu	37	17	73831793	73831793	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:73831793C>T	uc002jpp.2	-	19	2042	c.1662G>A	c.(1660-1662)GAG>GAA	p.E554E	UNC13D_uc010wsk.1_Silent_p.E554E|UNC13D_uc002jpq.1_Silent_p.E204E	NM_199242	NP_954712	Q70J99	UN13D_HUMAN	unc-13 homolog D	554					positive regulation of exocytosis|regulation of mast cell degranulation	exocytic vesicle|late endosome|lysosome|membrane|recycling endosome	protein binding			upper_aerodigestive_tract(1)|skin(1)	2			all cancers(21;2.11e-06)|Epithelial(20;2.32e-06)|BRCA - Breast invasive adenocarcinoma(9;0.000618)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGAACAGACTCTCGCCCATCT	0.632000									Familial_Hemophagocytic_Lymphohistiocytosis				34	24					0	0	0.006230	0	0
EVPL	2125	broad.mit.edu	37	17	74015720	74015720	+	Silent	SNP	G	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr17:74015720G>C	uc002jqi.2	-	10	1254	c.1026C>G	c.(1024-1026)GCC>GCG	p.A342A	EVPL_uc010wss.1_Silent_p.A342A|EVPL_uc010wst.1_5'UTR	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	342	Globular 1.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						TGACTGAGTCGGCCTCTTCCT	0.617000													14	21					0	0	0.003163	0	0
DSC3	1825	broad.mit.edu	37	18	28576969	28576969	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:28576969G>A	uc002kwj.3	-	15	2436	c.2281C>T	c.(2281-2283)CAA>TAA	p.Q761*	DSC3_uc002kwi.3_Nonsense_Mutation_p.Q761*	NM_001941	NP_001932	Q14574	DSC3_HUMAN	desmocollin 3 isoform Dsc3a preproprotein	761	Cytoplasmic (Potential).				homophilic cell adhesion|protein stabilization	desmosome|integral to membrane|membrane fraction	calcium ion binding|gamma-catenin binding			ovary(2)|skin(2)	4			OV - Ovarian serous cystadenocarcinoma(10;0.125)			CAAAAACCTTGGCTAGAGTTG	0.408000													6	13					0	0	0.001984	0	0
DSC1	1823	broad.mit.edu	37	18	28723636	28723636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:28723636G>A	uc002kwn.2	-	8	1320	c.1058C>T	c.(1057-1059)TCT>TTT	p.S353F	DSC1_uc002kwm.2_Missense_Mutation_p.S353F	NM_024421	NP_077739	Q08554	DSC1_HUMAN	desmocollin 1 isoform Dsc1a preproprotein	353	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	desmosome|gap junction|integral to membrane|membrane fraction	calcium ion binding			ovary(3)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(10;0.00778)			TTCTGTGAAAGATGGTGGATT	0.348000													28	40					0	0	0.003755	0	0
DSG4	147409	broad.mit.edu	37	18	28992934	28992934	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:28992934G>A	uc002kwq.2	+	16	2634	c.2499G>A	c.(2497-2499)ATG>ATA	p.M833I	DSG4_uc002kwr.2_Missense_Mutation_p.M852I	NM_177986	NP_817123	Q86SJ6	DSG4_HUMAN	desmoglein 4 isoform 2 preproprotein	833	Cytoplasmic (Potential).				homophilic cell adhesion	desmosome|integral to membrane	calcium ion binding			central_nervous_system(5)|ovary(3)	8			OV - Ovarian serous cystadenocarcinoma(10;0.00504)			AAAGCTGCATGGAAACTTTAG	0.433000													48	62					0	0	0.003610	0	0
SMAD2	4087	broad.mit.edu	37	18	45395657	45395657	+	Silent	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:45395657T>C	uc002lcy.2	-	4	725	c.477A>G	c.(475-477)GAA>GAG	p.E159E	SMAD2_uc002lcz.2_Silent_p.E159E|SMAD2_uc010xdc.1_Silent_p.E129E|SMAD2_uc010xdd.1_Silent_p.E129E	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	159	MH1.				anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						TTACACATACTTCATCCTTTT	0.363000													8	11					0	0	0.006214	0	0
SMAD2	4087	broad.mit.edu	37	18	45395668	45395668	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:45395668T>C	uc002lcy.2	-	4	714	c.466A>G	c.(466-468)AAA>GAA	p.K156E	SMAD2_uc002lcz.2_Missense_Mutation_p.K156E|SMAD2_uc010xdc.1_Missense_Mutation_p.K126E|SMAD2_uc010xdd.1_Missense_Mutation_p.K126E	NM_005901	NP_005892	Q15796	SMAD2_HUMAN	Sma- and Mad-related protein 2 isoform 1	156	MH1.				anterior/posterior pattern formation|cell fate commitment|common-partner SMAD protein phosphorylation|intracellular signal transduction|mesoderm formation|negative regulation of transcription, DNA-dependent|palate development|paraxial mesoderm morphogenesis|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|primary miRNA processing|regulation of binding|regulation of transforming growth factor beta receptor signaling pathway|response to cholesterol|SMAD protein complex assembly|transforming growth factor beta receptor signaling pathway|zygotic specification of dorsal/ventral axis	activin responsive factor complex|cytosol	activating transcription factor binding|co-SMAD binding|double-stranded DNA binding|I-SMAD binding|R-SMAD binding|sequence-specific DNA binding transcription factor activity|transforming growth factor beta receptor, pathway-specific cytoplasmic mediator activity|type I transforming growth factor beta receptor binding|ubiquitin protein ligase binding			large_intestine(3)|lung(1)|central_nervous_system(1)	5						TCATCCTTTTTAAGATTAAAA	0.373000													9	8					0	0	0.006214	0	0
SERPINB11	89778	broad.mit.edu	37	18	61390600	61390600	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:61390600G>A	uc002ljk.3	+	9	1208	c.1146G>A	c.(1144-1146)ACG>ACA	p.T382T	SERPINB11_uc010xes.1_Silent_p.T207T|SERPINB11_uc010dqd.2_Intron|SERPINB11_uc002ljj.3_Silent_p.T268T|SERPINB11_uc010dqe.2_Silent_p.T181T|SERPINB11_uc010dqf.2_Silent_p.T180T	NM_080475	NP_536723	Q96P15	SPB11_HUMAN	serpin peptidase inhibitor, clade B, member 11	382					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			breast(1)	1		Esophageal squamous(42;0.129)				ATACCAACACGATCCTATTCT	0.502000													10	13					0	0	0.000673	0	0
CDH7	1005	broad.mit.edu	37	18	63477228	63477228	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:63477228C>T	uc002ljz.2	+	3	824	c.499C>T	c.(499-501)CCC>TCC	p.P167S	CDH7_uc002lka.2_Missense_Mutation_p.P167S|CDH7_uc002lkb.2_Missense_Mutation_p.P167S	NM_033646	NP_387450	Q9ULB5	CADH7_HUMAN	cadherin 7, type 2 preproprotein	167	Extracellular (Potential).|Cadherin 2.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(2)|pancreas(1)|skin(1)	4		Esophageal squamous(42;0.129)				CGAAATGTCTCCCGTGGGTAA	0.403000													8	28					0	0	0.003080	0	0
CTDP1	9150	broad.mit.edu	37	18	77477868	77477868	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr18:77477868C>T	uc002lnh.1	+	10	2416	c.2269C>T	c.(2269-2271)CAC>TAC	p.H757Y	CTDP1_uc002lni.1_Missense_Mutation_p.H757Y|CTDP1_uc010drd.1_Missense_Mutation_p.H757Y	NM_004715	NP_004706	Q9Y5B0	CTDP1_HUMAN	CTD (carboxy-terminal domain, RNA polymerase II,	757					positive regulation of viral transcription|protein dephosphorylation|transcription elongation from RNA polymerase II promoter|viral reproduction	nucleoplasm	CTD phosphatase activity|DNA-directed RNA polymerase activity				0		Esophageal squamous(42;0.0157)|Melanoma(33;0.144)		OV - Ovarian serous cystadenocarcinoma(15;5.2e-06)|BRCA - Breast invasive adenocarcinoma(31;0.0277)		CGCCTTGTTCCACCCGATGCC	0.701000													29	27					0	0	0.002096	0	0
GADD45B	4616	broad.mit.edu	37	19	2477115	2477115	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:2477115C>T	uc002lwb.1	+	3	457	c.235C>T	c.(235-237)CAG>TAG	p.Q79*	GADD45B_uc010dtd.1_Nonsense_Mutation_p.Q64*|GADD45B_uc002lwc.1_Nonsense_Mutation_p.Q64*	NM_015675	NP_056490	O75293	GA45B_HUMAN	growth arrest and DNA-damage-inducible, beta	79					activation of MAPKKK activity|apoptosis|cell differentiation|multicellular organismal development|response to stress						0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CACGCTCATCCAGTCCTTCTG	0.637000											OREG0025141	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	25	85					0	0	0.004656	0	0
SHD	56961	broad.mit.edu	37	19	4288330	4288330	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:4288330C>T	uc002lzw.2	+	5	2270	c.807C>T	c.(805-807)ACC>ACT	p.T269T	SHD_uc010dtu.2_Intron	NM_020209	NP_064594	Q96IW2	SHD_HUMAN	Src homology 2 domain containing transforming	269	SH2.										0				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0337)|STAD - Stomach adenocarcinoma(1328;0.18)		TCAGTGAGACCAACCCCCAGG	0.572000													16	32					0	0	0.004007	0	0
MPND	84954	broad.mit.edu	37	19	4359234	4359234	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:4359234C>T	uc002mae.2	+	11	1378	c.1311C>T	c.(1309-1311)ACC>ACT	p.T437T	MPND_uc010dtx.2_RNA|MPND_uc002mag.2_Silent_p.T417T|MPND_uc002maf.2_Silent_p.T467T|MPND_uc002mah.2_Silent_p.T325T|MPND_uc002mai.2_Silent_p.T326T	NM_032868	NP_116257	Q8N594	MPND_HUMAN	MPN domain containing isoform 1	437							peptidase activity			breast(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0149)|STAD - Stomach adenocarcinoma(1328;0.18)		AGGAGCACACCTACCTCGACA	0.617000													29	72					0	0	0.003271	0	0
SH2D3A	10045	broad.mit.edu	37	19	6763740	6763740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:6763740C>T	uc002mft.2	-	2	214	c.20G>A	c.(19-21)GGA>GAA	p.G7E	SH2D3A_uc010xjg.1_Missense_Mutation_p.E2K	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	7					JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						AAGGTCTTCTCCATCCTGTGG	0.527000													28	93					0	0	0.002096	0	0
FCER2	2208	broad.mit.edu	37	19	7755382	7755382	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:7755382G>A	uc002mhn.2	-	9	715	c.531C>T	c.(529-531)TTC>TTT	p.F177F	FCER2_uc010xjs.1_Silent_p.F99F|FCER2_uc010xjt.1_Silent_p.F99F|FCER2_uc002mhm.2_Silent_p.F177F	NM_002002	NP_001993	P06734	FCER2_HUMAN	Fc fragment of IgE, low affinity II, receptor	177	C-type lectin.|Extracellular (Potential).				positive regulation of killing of cells of other organism|positive regulation of nitric-oxide synthase 2 biosynthetic process|positive regulation of nitric-oxide synthase activity	extracellular region|integral to plasma membrane	IgE binding|integrin binding|receptor activity|sugar binding				0						TGCCCTTGCCGAAGTAGTAGC	0.612000													22	62					0	0	0.002299	0	0
CCL25	6370	broad.mit.edu	37	19	8121277	8121277	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:8121277G>A	uc002mjd.2	+	3	219	c.219G>A	c.(217-219)AAG>AAA	p.K73K	CCL25_uc002mjc.3_Silent_p.K73K|CCL25_uc010dvy.1_Intron	NM_005624	NP_005615	O15444	CCL25_HUMAN	small inducible cytokine A25 precursor	73					chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response	extracellular space|soluble fraction	CCR10 chemokine receptor binding|chemokine activity|hormone activity				0						GACACAGGAAGGTGTGTGGGA	0.577000													13	13					0	0	0.002450	0	0
FBN3	84467	broad.mit.edu	37	19	8146359	8146359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:8146359C>T	uc002mjf.2	-	57	7240	c.7219G>A	c.(7219-7221)GAT>AAT	p.D2407N	FBN3_uc002mje.2_Missense_Mutation_p.D246N	NM_032447	NP_115823	Q75N90	FBN3_HUMAN	fibrillin 3 precursor	2407	EGF-like 39; calcium-binding.					proteinaceous extracellular matrix	calcium ion binding|extracellular matrix structural constituent			ovary(6)|skin(3)|pancreas(1)|central_nervous_system(1)	11						CTGCACTCATCCATATCTGGG	0.597000													85	40					0	0	0.003610	0	0
MUC16	94025	broad.mit.edu	37	19	9061038	9061038	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:9061038G>A	uc002mkp.2	-	3	26612	c.26408C>T	c.(26407-26409)ACC>ATC	p.T8803I		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8805	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TGTGTCCAAGGTAAAGGTACC	0.517000													12	29					0	0	0.000978	0	0
MUC16	94025	broad.mit.edu	37	19	9088636	9088636	+	Missense_Mutation	SNP	C	T	T	rs148517753	by1000genomes	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:9088636C>T	uc002mkp.2	-	1	3383	c.3179G>A	c.(3178-3180)GGA>GAA	p.G1060E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	1060	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGCTGTGGTTCCAATGGGCAG	0.483000													35	75					0	0	0.004878	0	0
OR7G1	125962	broad.mit.edu	37	19	9226038	9226038	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:9226038G>A	uc002mks.1	-	1	402	c.402C>T	c.(400-402)GTC>GTT	p.V134V		NM_001005192	NP_001005192	Q8NGA0	OR7G1_HUMAN	olfactory receptor, family 7, subfamily G,	134	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2						CATTCATGAGGACTGTGTACC	0.493000													43	108					0	0	0.003214	0	0
C3P1	388503	broad.mit.edu	37	19	10157465	10157465	+	RNA	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:10157465T>C	uc010dwx.1	+	9		c.1299T>C				NR_027300				Synthetic construct DNA, clone: pF1KB7402, Homo sapiens LOC388503 gene, without stop codon, in Flexi system.												0						GCGGACCTTGTTCCCCGAGAG	0.527000													101	46					0	0	0.003610	0	0
RAVER1	125950	broad.mit.edu	37	19	10433948	10433948	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:10433948G>A	uc002moa.2	-	5	1082	c.1002C>T	c.(1000-1002)GCC>GCT	p.A334A		NM_133452	NP_597709	Q8IY67	RAVR1_HUMAN	RAVER1	317	Interaction with PTBP1 (By similarity).					cytoplasm|nucleus	nucleotide binding|protein binding|RNA binding			ovary(1)	1			OV - Ovarian serous cystadenocarcinoma(20;1.81e-09)|Epithelial(33;3.65e-06)|all cancers(31;8.35e-06)			CCCGATTGAGGGCCTGCAGGA	0.677000													12	35					0	0	0.002450	0	0
Unknown	0	broad.mit.edu	37	19	15881816	15881816	+	RNA	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:15881816C>T	uc002nbo.2	-	6		c.1082G>A			uc010xor.1_Silent_p.L187L					Homo sapiens cDNA FLJ60024 complete cds, highly similar to Cytochrome P450 4F12 (EC 1.14.14.1).																		AGAAGCACATCAATGAAATCC	0.438000													68	37					0	0	0.003610	0	0
CPAMD8	27151	broad.mit.edu	37	19	17007101	17007101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:17007101C>T	uc002nfb.2	-	41	5485	c.5453G>A	c.(5452-5454)GGG>GAG	p.G1818E	CPAMD8_uc010xpj.1_5'UTR|CPAMD8_uc002nfd.1_Missense_Mutation_p.G283E	NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	1771						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						CAGGTCATCCCCGTAGGTGGA	0.692000													11	33					0	0	0.001368	0	0
TMEM59L	25789	broad.mit.edu	37	19	18729195	18729195	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:18729195C>T	uc002njy.3	+	7	880	c.793C>T	c.(793-795)CTG>TTG	p.L265L		NM_012109	NP_036241	Q9UK28	TM59L_HUMAN	brain-specific membrane-anchored protein	265						Golgi membrane|integral to membrane|membrane fraction				ovary(2)|skin(2)	4						GCGCTCGGGTCTGCCTCGCTG	0.706000													19	15					0	0	0.001216	0	0
UPF1	5976	broad.mit.edu	37	19	18971135	18971135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:18971135C>T	uc002nkg.2	+	16	2496	c.2221C>T	c.(2221-2223)CGT>TGT	p.R741C	UPF1_uc002nkf.2_Missense_Mutation_p.R730C|UPF1_uc002nkh.2_5'UTR	NM_002911	NP_002902	Q92900	RENT1_HUMAN	regulator of nonsense transcripts 1	741					cell cycle|DNA repair|DNA replication|histone mRNA catabolic process|mRNA export from nucleus|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|regulation of translational termination	chromatin|cytoplasmic mRNA processing body|exon-exon junction complex	ATP binding|ATP-dependent RNA helicase activity|chromatin binding|DNA binding|protein binding|protein binding|RNA binding|zinc ion binding			ovary(1)|central_nervous_system(1)	2						CACAGCGGATCGTGTGAAGAA	0.537000													164	88					0	0	0.003610	0	0
ZNF99	7652	broad.mit.edu	37	19	22941345	22941345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:22941345C>T	uc010xrh.1	-	5	1093	c.1093G>A	c.(1093-1095)GAA>AAA	p.E365K		NM_001080409	NP_001073878			zinc finger protein 99											ovary(1)|skin(1)	2		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.102)				CTGCATTCTTCACATTTGTAG	0.373000													7	15					0	0	0.001984	0	0
RPSAP58	388524	broad.mit.edu	37	19	24010532	24010532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:24010532C>T	uc002nrn.2	+	4	992	c.569C>T	c.(568-570)TCC>TTC	p.S190F		NM_002295	NP_002286			ribosomal protein SA												0						GGCACCATTTCCCGTGAACAC	0.532000													15	9					0	0	0.003954	0	0
ZNF254	9534	broad.mit.edu	37	19	24310063	24310063	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:24310063C>G	uc002nru.2	+	4	1395	c.1261C>G	c.(1261-1263)CTT>GTT	p.L421V	ZNF254_uc010xrk.1_Missense_Mutation_p.L336V	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	421	C2H2-type 8.				negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				ATCTTCAAATCTTACTACACA	0.348000													4	3					0	0	0.000602	0	0
ZNF254	9534	broad.mit.edu	37	19	24310604	24310604	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:24310604C>T	uc002nru.2	+	4	1936	c.1802C>T	c.(1801-1803)CCC>CTC	p.P601L	ZNF254_uc010xrk.1_Missense_Mutation_p.P516L	NM_203282	NP_975011	O75437	ZN254_HUMAN	zinc finger protein 254	601					negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(12;0.086)|all_lung(12;0.00528)|Lung NSC(12;0.00731)|all_epithelial(12;0.0186)				GGAGTAAAACCCTACAAATGT	0.363000													5	6					0	0	0.000602	0	0
PLEKHF1	79156	broad.mit.edu	37	19	30165196	30165196	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:30165196C>T	uc002nsh.3	+	2	552	c.450C>T	c.(448-450)ATC>ATT	p.I150I	PLEKHF1_uc002nsi.3_Silent_p.I235I	NM_024310	NP_077286	Q96S99	PKHF1_HUMAN	apoptosis-inducing protein D	150					apoptosis	lysosome|nucleus|perinuclear region of cytoplasm	metal ion binding				0	Ovarian(5;0.000567)|Breast(6;0.0602)|Esophageal squamous(110;0.239)		UCEC - Uterine corpus endometrioid carcinoma (4;2.65e-06)|STAD - Stomach adenocarcinoma(5;1.7e-06)|Lung(7;0.0623)|LUAD - Lung adenocarcinoma(5;0.0989)|BRCA - Breast invasive adenocarcinoma(6;0.225)			CACCCTGGATCCCCGACAAGG	0.697000													4	9					0	0	0.000602	0	0
KIAA0355	9710	broad.mit.edu	37	19	34838881	34838881	+	Missense_Mutation	SNP	G	A	A	rs146017138		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:34838881G>A	uc002nvd.3	+	11	3480	c.2621G>A	c.(2620-2622)CGG>CAG	p.R874Q		NM_014686	NP_055501	O15063	K0355_HUMAN	hypothetical protein LOC9710	874										ovary(1)	1	Esophageal squamous(110;0.162)					GGCAACCCCCGGGGCAACTGG	0.642000													27	26					0	0	0.007291	0	0
ATP4A	495	broad.mit.edu	37	19	36051324	36051324	+	Missense_Mutation	SNP	G	A	A	rs142971981		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:36051324G>A	uc002oal.1	-	6	757	c.728C>T	c.(727-729)ACG>ATG	p.T243M	ATP4A_uc010eee.1_5'Flank	NM_000704	NP_000695	P20648	ATP4A_HUMAN	hydrogen/potassium-exchanging ATPase 4A	243	Cytoplasmic (Potential).				ATP biosynthetic process|ATP hydrolysis coupled proton transport	integral to plasma membrane	ATP binding|hydrogen:potassium-exchanging ATPase activity|magnesium ion binding			ovary(1)	1	all_lung(56;1.05e-07)|Lung NSC(56;1.63e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0724)		Esomeprazole(DB00736)|Lansoprazole(DB00448)|Omeprazole(DB00338)|Pantoprazole(DB00213)|Rabeprazole(DB01129)|Trifluoperazine(DB00831)	GCTCTCGTGCGTGCACTCGGG	0.657000													32	57					0	0	0.002836	0	0
SUPT5H	6829	broad.mit.edu	37	19	39961136	39961136	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:39961136C>T	uc002olo.3	+	18	1829	c.1650C>T	c.(1648-1650)ATC>ATT	p.I550I	SUPT5H_uc002olp.3_Silent_p.I550I|SUPT5H_uc002olq.3_Silent_p.I546I|SUPT5H_uc002oln.3_Silent_p.I550I|SUPT5H_uc002olr.3_Silent_p.I550I|SUPT5H_uc002ols.1_Silent_p.I173I|SUPT5H_uc010egp.1_5'Flank	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	550					cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			TGGGTGTCATCGTGCGACTAG	0.592000													74	79					0	0	0.003610	0	0
TIMM50	92609	broad.mit.edu	37	19	39971436	39971436	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:39971436C>T	uc002olu.1	+	1	385	c.252C>T	c.(250-252)TCC>TCT	p.S84S	TIMM50_uc002olt.1_RNA	NM_001001563	NP_001001563	Q3ZCQ8	TIM50_HUMAN	translocase of inner mitochondrial membrane 50	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					mitochondrial membrane organization|protein transport|release of cytochrome c from mitochondria|transmembrane transport	integral to membrane|mitochondrial inner membrane presequence translocase complex|nuclear speck	interleukin-2 receptor binding|protein serine/threonine phosphatase activity|protein tyrosine phosphatase activity|ribonucleoprotein binding|RNA binding			ovary(1)	1	all_cancers(60;4.04e-06)|all_lung(34;1.77e-07)|Lung NSC(34;2.09e-07)|all_epithelial(25;1.13e-05)|Ovarian(47;0.159)		Epithelial(26;5.89e-26)|all cancers(26;1.96e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			GCTGTAGCTCCGGCCCGGGGC	0.711000													6	10					0	0	0.001168	0	0
PSG5	5673	broad.mit.edu	37	19	43674281	43674281	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:43674281C>T	uc002ovu.2	-	5	1105	c.974G>A	c.(973-975)GGA>GAA	p.G325E	PSG6_uc010xwk.1_Intron|PSG5_uc010eir.2_Missense_Mutation_p.G200E|PSG5_uc002ovx.2_Missense_Mutation_p.G325E|PSG5_uc002ovv.2_Missense_Mutation_p.G418E|PSG5_uc002ovw.2_Missense_Mutation_p.G147E	NM_002781	NP_002772	Q15238	PSG5_HUMAN	pregnancy specific beta-1-glycoprotein 5	325					female pregnancy	extracellular region				skin(3)	3		Prostate(69;0.00899)				ACGTCCTATTCCTGAAGGAGC	0.438000													29	47					0	0	0.002836	0	0
PSG4	5672	broad.mit.edu	37	19	43699390	43699390	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:43699390A>C	uc002ovy.2	-	4	847	c.745T>G	c.(745-747)TTA>GTA	p.L249V	PSG6_uc010xwk.1_Intron|PSG4_uc002owa.2_RNA|PSG4_uc002owb.2_Missense_Mutation_p.L156V|PSG4_uc002ovz.2_Intron	NM_002780	NP_002771	Q00888	PSG4_HUMAN	pregnancy specific beta-1-glycoprotein 4 isoform	249	Ig-like C2-type 2.				defense response|female pregnancy	extracellular region				ovary(1)	1		Prostate(69;0.00682)				CTGGGGTTTAAGTTGTTGATT	0.453000													70	85					0	0	0.003610	0	0
NPAS1	4861	broad.mit.edu	37	19	47535945	47535945	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:47535945C>T	uc002pfw.2	+	5	673	c.477C>T	c.(475-477)TTC>TTT	p.F159F	NPAS1_uc002pfx.2_5'UTR|NPAS1_uc002pfy.2_Silent_p.F159F|NPAS1_uc010xyj.1_5'Flank	NM_002517	NP_002508	Q99742	NPAS1_HUMAN	neuronal PAS domain protein 1	159	PAS 1.				central nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity				0		all_cancers(25;4.31e-08)|all_epithelial(76;2.96e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.102)		all cancers(93;6.02e-05)|OV - Ovarian serous cystadenocarcinoma(262;7.35e-05)|Epithelial(262;0.00389)|GBM - Glioblastoma multiforme(486;0.0252)		AAGGAAAATTCCTCTACATCT	0.577000											OREG0025585	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	35	38					0	0	0.002222	0	0
GRIN2D	2906	broad.mit.edu	37	19	48922977	48922977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:48922977C>T	uc002pjc.3	+	9	2085	c.1997C>T	c.(1996-1998)GCC>GTC	p.A666V	GRIN2D_uc010elx.2_5'UTR	NM_000836	NP_000827	O15399	NMDE4_HUMAN	N-methyl-D-aspartate receptor subunit 2D	666	Helical; (Potential).					cell junction|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|protein binding			ovary(3)|breast(3)	6		all_epithelial(76;1.11e-06)|all_lung(116;5.79e-06)|Lung NSC(112;1.18e-05)|all_neural(266;0.0189)|Ovarian(192;0.0261)|Breast(70;0.203)		all cancers(93;0.00014)|OV - Ovarian serous cystadenocarcinoma(262;0.000233)|Epithelial(262;0.0112)|GBM - Glioblastoma multiforme(486;0.0161)	L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Orphenadrine(DB01173)	GCCTTCTTCGCCGTCATCTTC	0.587000													49	62					0	0	0.003610	0	0
KCNJ14	3770	broad.mit.edu	37	19	48967909	48967909	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:48967909C>T	uc002pje.1	+	3	1591	c.1186C>T	c.(1186-1188)CTG>TTG	p.L396L	KCNJ14_uc002pjf.1_Silent_p.L396L	NM_013348	NP_037480	Q9UNX9	IRK14_HUMAN	potassium inwardly-rectifying channel J14	396	Cytoplasmic (By similarity).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			skin(1)	1		all_epithelial(76;2.38e-06)|all_lung(116;4.89e-06)|Lung NSC(112;9.34e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000109)|all cancers(93;0.000129)|Epithelial(262;0.0081)|GBM - Glioblastoma multiforme(486;0.0222)		TGAACTTGCTCTGAGCTGCTG	0.542000													49	37					0	0	0.003610	0	0
LRRC4B	94030	broad.mit.edu	37	19	51021343	51021343	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:51021343G>A	uc002pss.2	-	3	1764	c.1627C>T	c.(1627-1629)CCG>TCG	p.P543S		NM_001080457	NP_001073926	Q9NT99	LRC4B_HUMAN	leucine rich repeat containing 4B precursor	543	Extracellular (Potential).					cell junction|integral to membrane|presynaptic membrane				central_nervous_system(1)|skin(1)	2		all_neural(266;0.131)		OV - Ovarian serous cystadenocarcinoma(262;0.00284)|GBM - Glioblastoma multiforme(134;0.0188)		GAGGAGCGCGGGGCGGGTGCC	0.697000													12	19					0	0	0.001855	0	0
SIGLEC12	89858	broad.mit.edu	37	19	52004713	52004713	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:52004713C>T	uc002pwx.1	-	1	331	c.275G>A	c.(274-276)CGA>CAA	p.R92Q	SIGLEC12_uc002pww.1_5'Flank|SIGLEC12_uc010eoy.1_5'UTR	NM_053003	NP_443729	Q96PQ1	SIG12_HUMAN	sialic acid binding immunoglobulin-like	92	Ig-like V-type 1.|Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			ovary(3)|skin(2)	5		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.00161)|OV - Ovarian serous cystadenocarcinoma(262;0.0102)		GAGGTGGAATCGGTCCCGAGT	0.552000													68	85					0	0	0.003610	0	0
HAS1	3036	broad.mit.edu	37	19	52222609	52222609	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:52222609C>T	uc002pxo.1	-	2	587	c.552G>A	c.(550-552)CGG>CGA	p.R184R	HAS1_uc010epc.1_5'Flank|HAS1_uc010epd.1_Silent_p.R149R|HAS1_uc002pxn.1_Silent_p.R191R|HAS1_uc002pxp.1_Silent_p.R183R	NM_001523	NP_001514	Q92839	HAS1_HUMAN	hyaluronan synthase 1	184	Cytoplasmic (Potential).				cell adhesion	integral to plasma membrane	hyaluronan synthase activity|protein binding			ovary(1)|pancreas(1)	2		all_neural(266;0.0189)|Medulloblastoma(540;0.146)		GBM - Glioblastoma multiforme(134;0.00102)|OV - Ovarian serous cystadenocarcinoma(262;0.0177)		CCTCCACCTCCCGATAGGCTc	0.597000													7	6					0	0	0.001984	0	0
ZNF480	147657	broad.mit.edu	37	19	52825107	52825107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:52825107C>T	uc010ydl.1	+	5	674	c.604C>T	c.(604-606)CCT>TCT	p.P202S	ZNF480_uc002pyv.2_Missense_Mutation_p.P125S|ZNF480_uc010ydm.1_Missense_Mutation_p.P159S|ZNF480_uc010epn.2_Missense_Mutation_p.P33S|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	202					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		TAGAGAAAAACCTTATGAATG	0.338000													14	24					0	0	0.003163	0	0
ZNF665	79788	broad.mit.edu	37	19	53678737	53678737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:53678737C>T	uc010eqm.1	-	3	203	c.103G>A	c.(103-105)GAC>AAC	p.D35N		NM_024733	NP_079009	Q9H7R5	ZN665_HUMAN	zinc finger protein 665	Error:Variant_position_missing_in_Q9H7R5_after_alignment					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)	2				GBM - Glioblastoma multiforme(134;0.0196)		AACATGACGTCCCTGTACAAA	0.448000													53	58					0	0	0.003610	0	0
ZNF813	126017	broad.mit.edu	37	19	53994434	53994434	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:53994434A>C	uc002qbu.2	+	4	1076	c.948A>C	c.(946-948)AGA>AGC	p.R316S	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	316	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		ACCTTAAAAGACATAGGAGAA	0.388000													23	35					0	0	0.003330	0	0
NLRP12	91662	broad.mit.edu	37	19	54299280	54299280	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:54299280C>T	uc002qch.3	-	9	3151	c.2931G>A	c.(2929-2931)CTG>CTA	p.L977L	NLRP12_uc010eqw.2_Silent_p.L203L|NLRP12_uc002qci.3_Silent_p.L920L|NLRP12_uc002qcj.3_Silent_p.L978L|NLRP12_uc002qck.3_RNA|NLRP12_uc010eqx.2_Intron	NM_144687	NP_653288	P59046	NAL12_HUMAN	NLR family, pyrin domain containing 12 isoform	977	LRR 6.				negative regulation of I-kappaB kinase/NF-kappaB cascade|negative regulation of interleukin-1 secretion|negative regulation of interleukin-6 biosynthetic process|negative regulation of protein autophosphorylation|negative regulation of Toll signaling pathway|positive regulation of inflammatory response|positive regulation of interleukin-1 beta secretion|regulation of interleukin-18 biosynthetic process|release of cytoplasmic sequestered NF-kappaB	cytoplasm	ATP binding|caspase activator activity|protein binding			ovary(4)|upper_aerodigestive_tract(2)|lung(1)	7	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.026)		CACAGCTATCCAGCCTGGTGA	0.398000													24	27					0	0	0.004656	0	0
LILRA1	11024	broad.mit.edu	37	19	55106754	55106754	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:55106754C>T	uc002qgh.1	+	5	730	c.548C>T	c.(547-549)TCT>TTT	p.S183F	LILRA2_uc010yfg.1_Intron|LILRA1_uc010yfh.1_Missense_Mutation_p.S183F	NM_006863	NP_006854	O75019	LIRA1_HUMAN	leukocyte immunoglobulin-like receptor,	183	Ig-like C2-type 2.|Extracellular (Potential).				cell surface receptor linked signaling pathway|defense response|regulation of immune response	integral to membrane|plasma membrane	antigen binding|transmembrane receptor activity			skin(2)|ovary(1)	3				GBM - Glioblastoma multiforme(193;0.0348)		GCCATCTTCTCTGTGGGCCCC	0.567000													53	60					0	0	0.003610	0	0
NLRP11	204801	broad.mit.edu	37	19	56319229	56319229	+	Missense_Mutation	SNP	G	A	A	rs141366900		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:56319229G>A	uc010ygf.1	-	6	2704	c.1993C>T	c.(1993-1995)CGC>TGC	p.R665C	NLRP11_uc002qlz.2_Intron|NLRP11_uc002qmb.2_Missense_Mutation_p.R566C|NLRP11_uc002qmc.2_RNA|NLRP11_uc010ete.1_RNA	NM_145007	NP_659444	P59045	NAL11_HUMAN	NLR family, pyrin domain containing 11	665							ATP binding	p.R665C(1)		ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	6		Colorectal(82;0.0002)		GBM - Glioblastoma multiforme(193;0.0325)		TTGAGTGTGCGAAGTTTACAG	0.423000													21	39					0	0	0.002299	0	0
NLRP13	126204	broad.mit.edu	37	19	56410231	56410231	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:56410231C>T	uc010ygg.1	-	10	2887	c.2862G>A	c.(2860-2862)GTG>GTA	p.V954V		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	954	LRR 6.						ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		CCAAGATTTTCACATTATGAT	0.443000													21	30					0	0	0.002780	0	0
NLRP8	126205	broad.mit.edu	37	19	56487665	56487665	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:56487665C>T	uc002qmh.2	+	8	2943	c.2872C>T	c.(2872-2874)CTG>TTG	p.L958L	NLRP8_uc010etg.2_Silent_p.L939L	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	958						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		ATTACAGATCCTGGAGTAAGT	0.458000													24	23					0	0	0.003954	0	0
NLRP5	126206	broad.mit.edu	37	19	56539737	56539737	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:56539737C>T	uc002qmj.2	+	7	2138	c.2138C>T	c.(2137-2139)CCG>CTG	p.P713L	NLRP5_uc002qmi.2_Missense_Mutation_p.P694L	NM_153447	NP_703148	P59047	NALP5_HUMAN	NACHT, LRR and PYD containing protein 5	713	LRR 1.					mitochondrion|nucleolus	ATP binding			ovary(3)|skin(2)|kidney(1)|central_nervous_system(1)	7		Colorectal(82;3.46e-05)|Ovarian(87;0.0481)|Renal(1328;0.157)		GBM - Glioblastoma multiforme(193;0.0326)		GTGTGGCTTCCGATTAACCAG	0.493000													83	130					0	0	0.003610	0	0
GALP	85569	broad.mit.edu	37	19	56688492	56688492	+	Silent	SNP	C	T	T	rs74912591	byFrequency	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:56688492C>T	uc002qmo.1	+	2	97	c.15C>T	c.(13-15)TCC>TCT	p.S5S	GALP_uc010eti.2_Silent_p.S5S	NM_033106	NP_149097	Q9UBC7	GALP_HUMAN	galanin-like peptide isoform 1 precursor	5					neuropeptide signaling pathway	extracellular region	hormone activity				0		Colorectal(82;0.000147)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0507)		CTCCTCCCTCCGTCCCCCTGG	0.642000													4	8					0	0	0.000602	0	0
ZNF17	7565	broad.mit.edu	37	19	57932560	57932560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:57932560C>T	uc002qoo.1	+	3	1931	c.1700C>T	c.(1699-1701)TCC>TTC	p.S567F	ZNF547_uc002qpm.3_Intron|ZNF17_uc002qop.1_Missense_Mutation_p.S569F	NM_006959	NP_008890	P17021	ZNF17_HUMAN	zinc finger protein 17	567	C2H2-type 14.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0694)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.0234)|GBM - Glioblastoma multiforme(193;0.000426)|Lung(386;0.176)		AGCCAAAATTCCCACCTCATT	0.398000													16	30					0	0	0.004990	0	0
ZSCAN1	284312	broad.mit.edu	37	19	58565251	58565251	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr19:58565251G>A	uc002qrc.1	+	6	1306	c.1059G>A	c.(1057-1059)CGG>CGA	p.R353R		NM_182572	NP_872378	Q8NBB4	ZSCA1_HUMAN	zinc finger and SCAN domain containing 1	353					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0182)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0152)		AAGCCCCCCGGAGCAAGGGCC	0.662000													13	12					0	0	0.002450	0	0
MYT1L	23040	broad.mit.edu	37	2	1926472	1926472	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:1926472T>G	uc002qxe.2	-	10	1896	c.1069A>C	c.(1069-1071)ATC>CTC	p.I357L	MYT1L_uc002qxd.2_Missense_Mutation_p.I357L|MYT1L_uc010ewl.1_RNA	NM_015025	NP_055840	Q9UL68	MYT1L_HUMAN	myelin transcription factor 1-like	357					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|central_nervous_system(1)	6	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.037)|all_epithelial(98;0.241)		OV - Ovarian serous cystadenocarcinoma(76;0.169)|all cancers(51;0.244)		TGCTGACGGATGTTCATGTTC	0.572000													7	20					0	0	0.003080	0	0
ALLC	55821	broad.mit.edu	37	2	3727481	3727481	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:3727481G>A	uc010ewt.2	+	5	356	c.195G>A	c.(193-195)AGG>AGA	p.R65R		NM_018436	NP_060906	Q8N6M5	ALLC_HUMAN	allantoicase isoform a	84							allantoicase activity			central_nervous_system(1)	1	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.088)	all_cancers(51;0.24)		OV - Ovarian serous cystadenocarcinoma(76;0.088)|all cancers(51;0.151)|Epithelial(75;0.206)		GTGTCCTCAGGCTGGGGATCC	0.567000										HNSCC(21;0.051)			50	75					0	0	0.003610	0	0
CMPK2	129607	broad.mit.edu	37	2	7003698	7003698	+	Silent	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:7003698A>G	uc002qyo.2	-	2	796	c.687T>C	c.(685-687)TTT>TTC	p.F229F	CMPK2_uc010yis.1_Silent_p.F229F|CMPK2_uc010ewv.2_Silent_p.F229F	NM_207315	NP_997198	Q5EBM0	CMPK2_HUMAN	UMP-CMP kinase 2 precursor	229					dTDP biosynthetic process	mitochondrion	ATP binding|cytidylate kinase activity|thymidylate kinase activity|UMP kinase activity				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)					CTTCAGGAATAAAGGAGGTAC	0.493000													39	56					0	0	0.007835	0	0
MATN3	4148	broad.mit.edu	37	2	20205629	20205629	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:20205629C>T	uc002rdl.2	-	2	729	c.666G>A	c.(664-666)GTG>GTA	p.V222V	MATN3_uc010exu.1_Silent_p.V222V	NM_002381	NP_002372	O15232	MATN3_HUMAN	matrilin 3 precursor	222	VWFA.				skeletal system development	proteinaceous extracellular matrix	extracellular matrix structural constituent|protein binding				0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					CTGCCCGGTCCACGCCCACAG	0.567000													7	6					0	0	0.001984	0	0
APOB	338	broad.mit.edu	37	2	21234304	21234304	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:21234304C>T	uc002red.2	-	26	5564	c.5436G>A	c.(5434-5436)GGG>GGA	p.G1812G		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	1812					cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	GCCGTAGTTTCCCATTGTTGG	0.403000													143	172					0	0	0.003610	0	0
ADCY3	109	broad.mit.edu	37	2	25141758	25141758	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:25141758G>A	uc002rfs.3	-	1	298	c.99C>T	c.(97-99)GGC>GGT	p.G33G	ADCY3_uc010ykm.1_Silent_p.G33G	NM_004036	NP_004027	O60266	ADCY3_HUMAN	adenylate cyclase 3	33	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|sensory perception of smell|synaptic transmission|transmembrane transport|water transport	cytoplasm|integral to plasma membrane	ATP binding|calmodulin binding|metal ion binding			breast(3)|ovary(1)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.203)					CATGGGTCCGGCCCACCCCGC	0.547000													21	26					0	0	0.002780	0	0
OTOF	9381	broad.mit.edu	37	2	26705348	26705348	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:26705348G>A	uc002rhk.2	-	14	1632	c.1505C>T	c.(1504-1506)TCG>TTG	p.S502L		NM_194248	NP_919224	Q9HC10	OTOF_HUMAN	otoferlin isoform a	502	Cytoplasmic (Potential).|C2 2.				cellular membrane fusion|sensory perception of sound|synaptic vesicle exocytosis	basolateral plasma membrane|cell junction|cytosol|endoplasmic reticulum membrane|integral to membrane|membrane fraction|synaptic vesicle membrane	calcium ion binding			ovary(3)|breast(2)|central_nervous_system(1)|pancreas(1)	7	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GACCTTGTCCGAGTCTCGGAT	0.562000													41	52					0	0	0.003214	0	0
C2orf53	339779	broad.mit.edu	37	2	27360450	27360450	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:27360450G>A	uc002rjb.2	-	3	1328	c.748C>T	c.(748-750)CCT>TCT	p.P250S	PREB_uc002rix.1_5'Flank|PREB_uc002riy.1_5'Flank|PREB_uc002riz.1_5'Flank|PREB_uc002rja.1_5'Flank	NM_178553	NP_848648	Q53SZ7	CB053_HUMAN	hypothetical protein LOC339779	250											0	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					AGGCATATAGGATACTCCACG	0.667000													22	37					0	0	0.003330	0	0
GPN1	11321	broad.mit.edu	37	2	27851912	27851912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:27851912G>A	uc010ymc.1	+	1	50	c.29G>A	c.(28-30)GGG>GAG	p.G10E	ZNF512_uc010yly.1_Intron|CCDC121_uc010eze.2_5'Flank|CCDC121_uc002rld.2_5'Flank|CCDC121_uc002rle.2_5'Flank|GPN1_uc010ezf.2_Intron|GPN1_uc010yma.1_Intron|GPN1_uc010ymb.1_Intron|GPN1_uc010ymd.1_5'UTR|GPN1_uc010yme.1_Missense_Mutation_p.G10E|GPN1_uc010ezg.1_5'Flank	NM_007266	NP_009197	Q9HCN4	GPN1_HUMAN	GPN-loop GTPase 1 isoform a	Error:Variant_position_missing_in_Q9HCN4_after_alignment						cytoplasm	GTP binding|nucleoside-triphosphatase activity|protein binding				0						CGGGTGGGTGGGGCCAGGAGG	0.627000													29	32					0	0	0.007291	0	0
FOSL2	2355	broad.mit.edu	37	2	28635174	28635174	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:28635174C>T	uc002rma.2	+	4	1649	c.840C>T	c.(838-840)CTC>CTT	p.L280L	FOSL2_uc010ymi.1_Silent_p.L241L	NM_005253	NP_005244	P15408	FOSL2_HUMAN	FOS-like antigen 2	280					cell death|regulation of transcription from RNA polymerase II promoter	nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(2)|breast(1)	3	Acute lymphoblastic leukemia(172;0.155)					CCTCGAACCTCGTCTTCACCT	0.622000													14	18					0	0	0.004990	0	0
CLIP4	79745	broad.mit.edu	37	2	29356568	29356568	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:29356568G>A	uc002rmv.2	+	5	654	c.415G>A	c.(415-417)GGA>AGA	p.G139R	CLIP4_uc002rmu.2_Missense_Mutation_p.G139R|CLIP4_uc010ezm.1_Missense_Mutation_p.G139R|CLIP4_uc002rmw.2_RNA|CLIP4_uc010ymn.1_Missense_Mutation_p.G121R	NM_024692	NP_078968	Q8N3C7	CLIP4_HUMAN	CAP-GLY domain containing linker protein family,	139										ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)					TATTGACCTGGGAGCAGACAT	0.353000													6	9					0	0	0.001984	0	0
XDH	7498	broad.mit.edu	37	2	31591449	31591449	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:31591449C>T	uc002rnv.1	-	19	2137	c.2058G>A	c.(2056-2058)GTG>GTA	p.V686V		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	686					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	AGGTGATTTTCACCCCTTGGG	0.353000													31	33					0	0	0.002096	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43953530	43953530	+	Silent	SNP	C	T	T	rs139893812		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:43953530C>T	uc010yny.1	+	17	2744	c.2661C>T	c.(2659-2661)ATC>ATT	p.I887I	PLEKHH2_uc002rtf.3_Silent_p.I886I	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	887	PH 2.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				ATTATACTATCGTTATCCATC	0.398000													105	115					0	0	0.003610	0	0
DYSF	8291	broad.mit.edu	37	2	71891488	71891488	+	Silent	SNP	C	T	T	rs149087116		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:71891488C>T	uc002sie.2	+	45	5353	c.4977C>T	c.(4975-4977)ATC>ATT	p.I1659I	DYSF_uc010feg.2_Silent_p.I1690I|DYSF_uc010feh.2_Silent_p.I1666I|DYSF_uc002sig.3_Silent_p.I1645I|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.I1680I|DYSF_uc010fef.2_Silent_p.I1697I|DYSF_uc010fei.2_Silent_p.I1676I|DYSF_uc010fek.2_Silent_p.I1677I|DYSF_uc010fej.2_Silent_p.I1667I|DYSF_uc010fel.2_Silent_p.I1646I|DYSF_uc010feo.2_Silent_p.I1691I|DYSF_uc010fem.2_Silent_p.I1681I|DYSF_uc010fen.2_Silent_p.I1698I|DYSF_uc002sif.2_Silent_p.I1660I|DYSF_uc010yqy.1_Silent_p.I540I|DYSF_uc010yqz.1_Silent_p.I420I	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1659	Cytoplasmic (Potential).|C2 5.					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						ACGAAAAGATCGGTGAGACGG	0.567000													24	26					0	0	0.005443	0	0
SFXN5	94097	broad.mit.edu	37	2	73226139	73226139	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:73226139G>A	uc002siq.2	-	9	604	c.473C>T	c.(472-474)TCA>TTA	p.S158L	SFXN5_uc002sio.2_Missense_Mutation_p.S50L|SFXN5_uc010yrc.1_Missense_Mutation_p.H15Y|SFXN5_uc002sip.2_Intron|SFXN5_uc010fet.2_Missense_Mutation_p.S158L	NM_144579	NP_653180	Q8TD22	SFXN5_HUMAN	sideroflexin 5	158					iron ion homeostasis	integral to membrane	cation transmembrane transporter activity			ovary(1)	1						GGATGCAGGTGAAGGCTGGAA	0.572000													14	19					0	0	0.003163	0	0
CTNNA2	1496	broad.mit.edu	37	2	80772163	80772163	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:80772163G>A	uc010ysh.1	+	9	1352	c.1347G>A	c.(1345-1347)CGG>CGA	p.R449R	CTNNA2_uc010yse.1_Silent_p.R449R|CTNNA2_uc010ysf.1_Silent_p.R449R|CTNNA2_uc010ysg.1_Silent_p.R449R|CTNNA2_uc010ysi.1_Silent_p.R81R	NM_004389	NP_004380	P26232	CTNA2_HUMAN	catenin, alpha 2 isoform 1	449					axonogenesis|brain morphogenesis|cell-cell adhesion|dendrite morphogenesis|muscle cell differentiation|positive regulation of muscle cell differentiation|prepulse inhibition|radial glia guided migration of Purkinje cell|regulation of synapse structural plasticity	actin cytoskeleton|axon|cytosol	cadherin binding|structural constituent of cytoskeleton			pancreas(4)|lung(3)|breast(1)|skin(1)	9						AATTAGTTCGGATGGCAGCCA	0.483000													7	8					0	0	0.000673	0	0
IMMT	10989	broad.mit.edu	37	2	86406557	86406557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:86406557G>A	uc002sqz.3	-	3	696	c.308C>T	c.(307-309)TCG>TTG	p.S103L	IMMT_uc002srb.3_Missense_Mutation_p.S103L|IMMT_uc002sra.3_Missense_Mutation_p.S103L|IMMT_uc010ytd.1_Missense_Mutation_p.S103L|IMMT_uc010yte.1_Missense_Mutation_p.S103L|IMMT_uc002srd.2_Missense_Mutation_p.S103L|IMMT_uc002sre.3_Missense_Mutation_p.S103L|IMMT_uc010ytf.1_Missense_Mutation_p.S103L|IMMT_uc010fgs.1_Missense_Mutation_p.S103L	NM_006839	NP_006830	Q16891	IMMT_HUMAN	inner membrane protein, mitochondrial isoform 1	103	Mitochondrial intermembrane (Potential).					integral to mitochondrial inner membrane	protein binding			skin(1)	1						AACTCTTACCGATTTCTTTGG	0.299000													12	22					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	2	89292000	89292000	+	RNA	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:89292000G>A	uc010ytr.1	-	82		c.7206C>T			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		TGGTGAGAGTGAAATCTGTCC	0.463000													23	31					0	0	0.004656	0	0
TMEM131	23505	broad.mit.edu	37	2	98409003	98409003	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:98409003G>A	uc002syh.3	-	31	4219	c.3990C>T	c.(3988-3990)TCC>TCT	p.S1330S		NM_015348	NP_056163	Q92545	TM131_HUMAN	RW1 protein	1330	Pro-rich.					integral to membrane				ovary(4)|central_nervous_system(2)	6						GTTCTGGGTGGGAAGGGTGTG	0.647000													18	15					0	0	0.007413	0	0
C2orf40	84417	broad.mit.edu	37	2	106690485	106690485	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:106690485G>A	uc010fjf.2	+	3	379	c.271G>A	c.(271-273)GGC>AGC	p.G91S		NM_032411	NP_115787	Q9H1Z8	AUGN_HUMAN	esophageal cancer related gene 4 protein	91						extracellular region|transport vesicle					0						TCTCTACATGGGCTTTGACGA	0.617000													34	60					0	0	0.003755	0	0
RGPD3	653489	broad.mit.edu	37	2	107032315	107032315	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:107032315C>T	uc010ywi.1	-	21	5112	c.5055G>A	c.(5053-5055)GAG>GAA	p.E1685E		NM_001144013	NP_001137485	A6NKT7	RGPD3_HUMAN	RANBP2-like and GRIP domain containing 3	1685					intracellular transport		binding			ovary(1)	1						CCTTAATTTGCTCCATAAGGA	0.423000													24	39					0	0	0.002836	0	0
GCC2	9648	broad.mit.edu	37	2	109124082	109124082	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:109124082G>T	uc002tec.2	+	23	5205	c.5051G>T	c.(5050-5052)CGA>CTA	p.R1684L	GCC2_uc002ted.2_Missense_Mutation_p.R1583L|uc002tee.3_Intron	NM_181453	NP_852118	Q8IWJ2	GCC2_HUMAN	GRIP and coiled-coil domain-containing 2	1684	Mediates interaction with RAB9A.				Golgi ribbon formation|late endosome to Golgi transport|microtubule anchoring|microtubule organizing center organization|protein localization in Golgi apparatus|protein targeting to lysosome|recycling endosome to Golgi transport|regulation of protein exit from endoplasmic reticulum	membrane|trans-Golgi network	identical protein binding			ovary(1)	1						TCTGGACTTCGATAGGTTGAT	0.308000													48	52					1.73933e-33	3.83584e-33	0.003610	1	0
FBLN7	129804	broad.mit.edu	37	2	112940464	112940465	+	Missense_Mutation	DNP	CC	TA	TA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:112940464_112940465CC>TA	uc002tho.1	+	6	1038_1039	c.767_768CC>TA	c.(766-768)CCC>CTA	p.P256L	FBLN7_uc002thn.2_Missense_Mutation_p.P256L|FBLN7_uc010fki.1_Missense_Mutation_p.P210L|FBLN7_uc010fkj.1_Intron	NM_153214	NP_694946	Q53RD9	FBLN7_HUMAN	fibulin 7 isoform 1	256	EGF-like 2; calcium-binding (Potential).				cell adhesion	proteinaceous extracellular matrix	calcium ion binding|heparin binding			ovary(1)|central_nervous_system(1)	2						TGCACCTGCCCCGGTGGATACC	0.649000													24	40					0	0	0.004672	0	0
CKAP2L	150468	broad.mit.edu	37	2	113504016	113504016	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:113504016G>A	uc002tie.2	-	6	1818	c.1739C>T	c.(1738-1740)GCC>GTC	p.A580V	CKAP2L_uc002tif.2_Missense_Mutation_p.A169V|CKAP2L_uc010yxp.1_Missense_Mutation_p.A415V	NM_152515	NP_689728	Q8IYA6	CKP2L_HUMAN	cytoskeleton associated protein 2-like	580						centrosome					0						ATTTTTAATGGCCTCTTCATA	0.378000													71	75					0	0	0.003610	0	0
PSD4	23550	broad.mit.edu	37	2	113942979	113942979	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:113942979C>T	uc002tjc.2	+	4	1394	c.1211C>T	c.(1210-1212)CCT>CTT	p.P404L	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Missense_Mutation_p.P403L|PSD4_uc002tjf.2_5'UTR	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	404					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						AGAGGAGGTCCTTTTTGGCCC	0.502000													54	62					0	0	0.003610	0	0
RABL2A	11159	broad.mit.edu	37	2	114398488	114398488	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:114398488G>A	uc002tkn.3	+	6	529	c.315G>A	c.(313-315)AGG>AGA	p.R105R	RABL2A_uc010flb.2_Silent_p.R105R|RABL2A_uc002tkl.3_Intron|RABL2A_uc002tkm.3_Intron|RABL2A_uc002tks.3_Silent_p.R105R|RABL2A_uc002tkr.2_Silent_p.R105R|RABL2A_uc002tkp.3_Silent_p.R105R	NM_007082	NP_009013	Q9UBK7	RBL2A_HUMAN	RAB, member of RAS oncogene family-like 2A	105					small GTPase mediated signal transduction		GTP binding|GTPase activity			skin(1)	1						ATATACAGAGGAAAGTCACCT	0.498000													32	36					0	0	0.004878	0	0
RABL2A	11159	broad.mit.edu	37	2	114398994	114398994	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:114398994C>T	uc002tkn.3	+	7	685	c.471C>T	c.(469-471)TTC>TTT	p.F157F	RABL2A_uc010flb.2_Silent_p.F157F|RABL2A_uc002tkl.3_Silent_p.F76F|RABL2A_uc002tkm.3_Silent_p.F94F|RABL2A_uc002tks.3_Silent_p.F158F|RABL2A_uc002tkr.2_Silent_p.F158F|RABL2A_uc002tkp.3_Silent_p.F158F	NM_007082	NP_009013	Q9UBK7	RBL2A_HUMAN	RAB, member of RAS oncogene family-like 2A	157					small GTPase mediated signal transduction		GTP binding|GTPase activity			skin(1)	1						CCCTGTATTTCGTCTCGGCTG	0.498000													46	66					0	0	0.003610	0	0
CLASP1	23332	broad.mit.edu	37	2	122106150	122106150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:122106150C>T	uc002tnc.2	-	37	4741	c.4351G>A	c.(4351-4353)GAG>AAG	p.E1451K	CLASP1_uc010yyv.1_Missense_Mutation_p.E497K|CLASP1_uc002tmz.2_Missense_Mutation_p.E536K|CLASP1_uc002tna.2_Missense_Mutation_p.E497K|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.E1392K|CLASP1_uc010yza.1_Missense_Mutation_p.E1384K|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA|CLASP1_uc002tmy.2_Missense_Mutation_p.E287K	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1451	Localization to kinetochores.|Interaction with PHLDB2 and RSN.|Interaction with CLIP2 (By similarity).				axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					GCGATCCTCTCGACGACTTTG	0.602000													12	18					0	0	0.003163	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125192188	125192188	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:125192188C>T	uc002tno.2	+	5	1021	c.657C>T	c.(655-657)TTC>TTT	p.F219F	CNTNAP5_uc010flu.2_Silent_p.F219F	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	219	Laminin G-like 1.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		GGGTCCTGTTCCATGGAGAAG	0.502000													12	10					0	0	0.000978	0	0
MYO7B	4648	broad.mit.edu	37	2	128338359	128338359	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:128338359G>A	uc002top.2	+	10	1095	c.1042G>A	c.(1042-1044)GAG>AAG	p.E348K		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	348	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		AGACGTGATGGAGACGCCCGC	0.597000													8	9					0	0	0.000978	0	0
MYO7B	4648	broad.mit.edu	37	2	128341887	128341887	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:128341887G>A	uc002top.2	+	13	1587	c.1534G>A	c.(1534-1536)GAA>AAA	p.E512K		NM_001080527	NP_001073996	Q6PIF6	MYO7B_HUMAN	myosin VIIB	512	Myosin head-like.					apical plasma membrane|myosin complex	actin binding|ATP binding|motor activity			ovary(1)|pancreas(1)	2	Colorectal(110;0.1)			BRCA - Breast invasive adenocarcinoma(221;0.0753)		CCTCCTGGACGAAGAAAGCCG	0.602000													22	32					0	0	0.003954	0	0
DARS	1615	broad.mit.edu	37	2	136741005	136741005	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:136741005T>A	uc002tux.1	-	2	270	c.86A>T	c.(85-87)TAT>TTT	p.Y29F	DARS_uc010fnj.1_Intron	NM_001349	NP_001340	P14868	SYDC_HUMAN	aspartyl-tRNA synthetase	29					aspartyl-tRNA aminoacylation|protein complex assembly	cytosol|nuclear membrane|plasma membrane|soluble fraction	aminoacylase activity|aspartate-tRNA ligase activity|ATP binding|nucleic acid binding|protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.168)	L-Aspartic Acid(DB00128)	AGATATTCCATATCTCTCTTT	0.294000													10	16					0	0	0.006214	0	0
ACVR1C	130399	broad.mit.edu	37	2	158406749	158406749	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:158406749G>A	uc002tzk.3	-	4	943	c.700C>T	c.(700-702)CGT>TGT	p.R234C	ACVR1C_uc002tzl.3_Missense_Mutation_p.R154C|ACVR1C_uc010fof.2_Intron|ACVR1C_uc010foe.2_Missense_Mutation_p.R184C	NM_145259	NP_660302	Q8NER5	ACV1C_HUMAN	activin A receptor, type IC isoform 1	234	Protein kinase.|Cytoplasmic (Potential).				apoptosis|cell differentiation|regulation of apoptosis	activin receptor complex	activin receptor activity, type I|ATP binding|transforming growth factor beta receptor activity			lung(3)|ovary(2)|skin(2)	7						TCTGCCTCACGAAACCAAGAT	0.428000													57	56					0	0	0.003610	0	0
LY75	4065	broad.mit.edu	37	2	160741674	160741674	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:160741674C>T	uc002ubc.3	-	6	1113	c.1044G>A	c.(1042-1044)GTG>GTA	p.V348V	LY75_uc002ubb.3_Silent_p.V348V|LY75_uc010fos.2_Silent_p.V348V|LY75_uc010fot.1_Silent_p.V348V	NM_002349	NP_002340	O60449	LY75_HUMAN	lymphocyte antigen 75 precursor	348	Extracellular (Potential).				endocytosis|immune response|inflammatory response	integral to plasma membrane	receptor activity|sugar binding				0				COAD - Colon adenocarcinoma(177;0.132)		CTGTTAACTCCACTGTATTAT	0.388000													5	10					0	0	0.001168	0	0
PLA2R1	22925	broad.mit.edu	37	2	160884796	160884796	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:160884796C>T	uc002ube.1	-	6	1239	c.1032G>A	c.(1030-1032)CGG>CGA	p.R344R	PLA2R1_uc010zcp.1_Silent_p.R344R|PLA2R1_uc002ubf.2_Silent_p.R344R	NM_007366	NP_031392	Q13018	PLA2R_HUMAN	phospholipase A2 receptor 1 isoform 1 precursor	344	Extracellular (Potential).|C-type lectin 1.				endocytosis	extracellular space|integral to plasma membrane	receptor activity|sugar binding			skin(2)|ovary(1)	3						ACTCACAATCCCGACTCCTCC	0.348000													35	58					0	0	0.002522	0	0
TBR1	10716	broad.mit.edu	37	2	162274311	162274311	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:162274311C>T	uc002ubw.1	+	2	1119	c.817C>T	c.(817-819)CCT>TCT	p.P273S	TBR1_uc010foy.2_5'Flank	NM_006593	NP_006584	Q16650	TBR1_HUMAN	T-box, brain, 1	273	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|central_nervous_system(1)	2						CAAATGGGTTCCTTGCGGCAA	0.423000													35	41					0	0	0.002836	0	0
GRB14	2888	broad.mit.edu	37	2	165383593	165383593	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:165383593C>T	uc002ucl.2	-	4	1075	c.534G>A	c.(532-534)GGG>GGA	p.G178G	GRB14_uc010zcv.1_Silent_p.G91G|GRB14_uc002ucm.2_RNA	NM_004490	NP_004481	Q14449	GRB14_HUMAN	growth factor receptor-bound protein 14	178	Ras-associating.				blood coagulation|leukocyte migration	cytosol|endosome membrane|Golgi membrane|microsome|plasma membrane	SH3/SH2 adaptor activity			ovary(5)|upper_aerodigestive_tract(1)|lung(1)	7						CTTCTTCTATCCCCCAGTTGG	0.328000													27	43					0	0	0.007291	0	0
SCN1A	6323	broad.mit.edu	37	2	166894589	166894589	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:166894589C>T	uc010zcz.1	-	15	2628	c.2610G>A	c.(2608-2610)AAG>AAA	p.K870K	SCN1A_uc002udo.3_Silent_p.K750K|SCN1A_uc010fpk.2_Silent_p.K722K	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	881	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TGCCGATGATCTTTATTAGCA	0.398000													28	29					0	0	0.007291	0	0
SCN9A	6335	broad.mit.edu	37	2	167160752	167160752	+	Silent	SNP	G	A	A	rs71428908		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:167160752G>A	uc010fpl.2	-	6	1025	c.684C>T	c.(682-684)ATC>ATT	p.I228I	SCN9A_uc002udr.1_Silent_p.I99I|SCN9A_uc002uds.1_Intron|SCN9A_uc002udt.1_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	228	I.|Helical; Voltage-sensor; Name=S4 of repeat I; (Potential).		I -> M.			voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	TCTTACCTGGGATTACAGAAA	0.373000													16	17					0	0	0.001523	0	0
ITGA6	3655	broad.mit.edu	37	2	173349974	173349974	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:173349974C>T	uc002uhp.1	+	13	2039	c.1836C>T	c.(1834-1836)CCC>CCT	p.P612P	ITGA6_uc010zdy.1_Silent_p.P493P|ITGA6_uc002uho.1_Silent_p.P612P|ITGA6_uc010fqm.1_Silent_p.P258P	NM_001079818	NP_001073286	P23229	ITA6_HUMAN	integrin alpha chain, alpha 6 isoform a	651	Extracellular (Potential).				blood coagulation|cell adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|leukocyte migration|negative regulation of apoptosis|positive regulation of apoptosis|positive regulation of phosphorylation|positive regulation of transcription from RNA polymerase II promoter	integrin complex	protein binding|receptor activity			ovary(1)|lung(1)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0979)			CAGATGAACCCAAGACAGCTC	0.403000													23	51					0	0	0.006320	0	0
ZAK	51776	broad.mit.edu	37	2	174047580	174047580	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:174047580A>G	uc002uhz.2	+	4	448	c.248_splice	c.e4-2	p.E83_splice	ZAK_uc002uhx.2_Splice_Site_p.E83_splice|ZAK_uc002uhy.2_Splice_Site_p.E83_splice|ZAK_uc010zei.1_Splice_Site|ZAK_uc002uia.1_Splice_Site_p.E83_splice	NM_016653	NP_057737	Q9NYL2	MLTK_HUMAN	MLK-related kinase isoform 1						activation of JUN kinase activity|activation of MAPKK activity|cell cycle arrest|cell death|cell differentiation|cell proliferation|DNA damage checkpoint|positive regulation of apoptosis|response to radiation	cytoplasm|nucleus	ATP binding|identical protein binding|magnesium ion binding|MAP kinase kinase kinase activity|protein binding			lung(3)|stomach(1)|ovary(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.176)			CTTTTAAAATAGAATATGCTT	0.299000													3	14					0	0	0.004672	0	0
TTN	7273	broad.mit.edu	37	2	179409053	179409053	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:179409053G>A	uc010zfg.1	-	294	88423	c.88199C>T	c.(88198-88200)ACT>ATT	p.T29400I	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.T23095I|TTN_uc010zfi.1_Missense_Mutation_p.T23028I|TTN_uc010zfj.1_Missense_Mutation_p.T22903I	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	30327							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGTGAATTCAGTATTTCTTAT	0.438000													4	14					0	0	0.000248	0	0
TTN	7273	broad.mit.edu	37	2	179433620	179433620	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:179433620C>T	uc010zfg.1	-	275	69759	c.69535G>A	c.(69535-69537)GAG>AAG	p.E23179K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.E16874K|TTN_uc010zfi.1_Missense_Mutation_p.E16807K|TTN_uc010zfj.1_Missense_Mutation_p.E16682K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	24106							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CGAGCACACTCTGACCATTTC	0.403000													10	20					0	0	0.006214	0	0
TTN	7273	broad.mit.edu	37	2	179485498	179485498	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:179485498G>A	uc010zfg.1	-	196	38359	c.38135C>T	c.(38134-38136)TCT>TTT	p.S12712F	TTN_uc010zfh.1_Missense_Mutation_p.S6407F|TTN_uc010zfi.1_Missense_Mutation_p.S6340F|TTN_uc010zfj.1_Missense_Mutation_p.S6215F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13639							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATTGGTCAAAGACACATTATA	0.338000													16	13					0	0	0.001216	0	0
TTN	7273	broad.mit.edu	37	2	179490104	179490104	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:179490104C>T	uc010zfg.1	-	190	36964	c.36740G>A	c.(36739-36741)GGA>GAA	p.G12247E	TTN_uc010zfh.1_Missense_Mutation_p.G5942E|TTN_uc010zfi.1_Missense_Mutation_p.G5875E|TTN_uc010zfj.1_Missense_Mutation_p.G5750E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	13174							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGAACTTTTCCTTCTGAACG	0.353000													7	12					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179584443	179584443	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:179584443C>T	uc010zfg.1	-	79	20268	c.20044G>A	c.(20044-20046)GGA>AGA	p.G6682R	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.G3343R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	7609							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AATTCTCTTCCATCTTTGAAC	0.428000													7	8					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179616677	179616677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:179616677C>T	uc002unb.2	-	46	10674	c.10450G>A	c.(10450-10452)GCT>ACT	p.A3484T	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron	NM_133379	NP_596870	Q8WZ42	TITIN_HUMAN	titin isoform novex-3	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTTTTAGCAGCCATGGATTTG	0.363000													10	18					0	0	0.000978	0	0
TTN	7273	broad.mit.edu	37	2	179629403	179629403	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:179629403G>A	uc010zfg.1	-	42	10063	c.9839C>T	c.(9838-9840)TCC>TTC	p.S3280F	TTN_uc010zfh.1_Missense_Mutation_p.S3234F|TTN_uc010zfi.1_Missense_Mutation_p.S3234F|TTN_uc010zfj.1_Missense_Mutation_p.S3234F|TTN_uc002umz.1_5'Flank|TTN_uc002unb.2_Missense_Mutation_p.S3280F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	3280							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAGCCAGTGGAAAGCAGCTG	0.512000													14	23					0	0	0.002450	0	0
CERKL	375298	broad.mit.edu	37	2	182403827	182403827	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:182403827G>A	uc002unx.2	-	13	1709	c.1608C>T	c.(1606-1608)GTC>GTT	p.V536V	CERKL_uc002uny.2_Silent_p.V510V|CERKL_uc010zfm.1_Silent_p.V492V|CERKL_uc002unz.2_Silent_p.V258V|CERKL_uc002uoa.2_Silent_p.V441V|CERKL_uc002uob.2_Silent_p.V258V|CERKL_uc002uoc.2_Silent_p.V397V|CERKL_uc010frk.2_RNA|CERKL_uc002unw.2_Silent_p.V106V	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	536					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			ACCTAATATGGACCTCTGATG	0.318000													10	26					0	0	0.001855	0	0
CERKL	375298	broad.mit.edu	37	2	182468748	182468748	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:182468748G>A	uc002unx.2	-	2	398	c.297C>T	c.(295-297)TTC>TTT	p.F99F	CERKL_uc002uny.2_Silent_p.F99F|CERKL_uc010zfm.1_Silent_p.F99F|CERKL_uc002unz.2_5'UTR|CERKL_uc002uoa.2_Silent_p.F99F|CERKL_uc002uob.2_5'UTR|CERKL_uc002uoc.2_Silent_p.F99F|CERKL_uc010frk.2_RNA|CERKL_uc002uod.1_5'UTR|CERKL_uc002uoe.2_Silent_p.F99F	NM_001030311	NP_001025482	Q49MI3	CERKL_HUMAN	ceramide kinase-like isoform b	99					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|anti-apoptosis	endoplasmic reticulum|endoplasmic reticulum|Golgi apparatus|Golgi apparatus|nucleolus|nucleolus	diacylglycerol kinase activity			ovary(2)|kidney(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(117;0.088)			GTTTCACAGAGAATATGTCTT	0.308000													8	5					0	0	0.004482	0	0
COL5A2	1290	broad.mit.edu	37	2	189926325	189926325	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:189926325C>A	uc002uqk.2	-	30	2269	c.1994G>T	c.(1993-1995)AGA>ATA	p.R665I	COL5A2_uc010frx.2_Missense_Mutation_p.R241I	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	665					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			TTGTTCTCCTCTTTCACCAGC	0.383000													11	12					2.32078e-09	5.041e-09	0.003163	1	0
DNAH7	56171	broad.mit.edu	37	2	196681570	196681570	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:196681570C>T	uc002utj.3	-	51	9644	c.9543G>A	c.(9541-9543)GAG>GAA	p.E3181E		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3181	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCTGAGAAATCTCATTAGCCA	0.398000													34	42					0	0	0.003271	0	0
SATB2	23314	broad.mit.edu	37	2	200213592	200213592	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:200213592G>A	uc002uuy.1	-	7	1822	c.1005C>T	c.(1003-1005)ATC>ATT	p.I335I	SATB2_uc010fsq.1_Silent_p.I217I|SATB2_uc002uuz.1_Silent_p.I335I|SATB2_uc002uva.1_Silent_p.I335I|SATB2_uc002uvb.1_Silent_p.I78I	NM_015265	NP_056080	Q9UPW6	SATB2_HUMAN	SATB homeobox 2	335						cytoplasm|nuclear matrix	sequence-specific DNA binding transcription factor activity			ovary(1)	1						ACTGCTGGTTGATGGCTTGAG	0.512000													12	18					0	0	0.001368	0	0
ORC2L	4999	broad.mit.edu	37	2	201796123	201796123	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:201796123C>T	uc002uwr.2	-	11	1113	c.856G>A	c.(856-858)GAA>AAA	p.E286K	ORC2L_uc010zhj.1_Missense_Mutation_p.E286K	NM_006190	NP_006181	Q13416	ORC2_HUMAN	origin recognition complex, subunit 2	286					cell cycle checkpoint|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|negative regulation of transcription from RNA polymerase II promoter|S phase of mitotic cell cycle	nuclear origin of replication recognition complex|nucleoplasm	DNA replication origin binding|protein binding				0						TGTTTAAGTTCGGCAGAAAAG	0.328000													19	28					0	0	0.001523	0	0
FAM117B	150864	broad.mit.edu	37	2	203591024	203591024	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:203591024C>T	uc010zhx.1	+	4	908	c.898C>T	c.(898-900)CAT>TAT	p.H300Y		NM_173511	NP_775782	Q6P1L5	F117B_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	300										ovary(1)	1						CAGTCGGCATCATCGAGATAA	0.403000													117	160					0	0	0.003610	0	0
STK36	27148	broad.mit.edu	37	2	219553520	219553520	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:219553520C>T	uc002viu.2	+	12	1747	c.1481C>T	c.(1480-1482)TCC>TTC	p.S494F	STK36_uc002viv.2_Missense_Mutation_p.S494F	NM_015690	NP_056505	Q9NRP7	STK36_HUMAN	serine/threonine kinase 36	494					cilium assembly|positive regulation of hh target transcription factor activity|positive regulation of smoothened signaling pathway|post-embryonic development	aggresome|cytoplasm|focal adhesion|intermediate filament cytoskeleton|nucleus	ATP binding|protein serine/threonine kinase activity|transcription factor binding			ovary(4)|stomach(2)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	11		Renal(207;0.0915)		Epithelial(149;9.65e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.00813)|Lung(261;0.00984)		GCCTTGTATTCCTTCTGCCGG	0.582000													19	38					0	0	0.006122	0	0
CUL3	8452	broad.mit.edu	37	2	225422555	225422555	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:225422555A>G	uc002vny.2	-	2	469	c.85T>C	c.(85-87)TAT>CAT	p.Y29H	CUL3_uc010zls.1_Intron|CUL3_uc010fwy.1_Missense_Mutation_p.Y35H	NM_003590	NP_003581	Q13618	CUL3_HUMAN	cullin 3	29					cell cycle arrest|cell migration|cyclin catabolic process|cytokinesis|G1/S transition of mitotic cell cycle|induction of apoptosis by intracellular signals|mitotic anaphase|negative regulation of Rho protein signal transduction|positive regulation of cell proliferation|protein ubiquitination|stress fiber assembly	Cul3-RING ubiquitin ligase complex|Golgi apparatus|nucleus|polar microtubule	ubiquitin protein ligase binding			upper_aerodigestive_tract(1)|ovary(1)|liver(1)|kidney(1)	4		all_lung(227;0.00877)|Lung NSC(271;0.011)|Renal(207;0.0112)|all_hematologic(139;0.138)		Epithelial(121;1.58e-11)|all cancers(144;1.43e-08)|Lung(261;0.00863)|LUSC - Lung squamous cell carcinoma(224;0.00902)		CTGTTTACATATTTTTCATCC	0.318000													18	24					0	0	0.007413	0	0
SPHKAP	80309	broad.mit.edu	37	2	228882624	228882624	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:228882624C>T	uc002vpq.2	-	7	2993	c.2946G>A	c.(2944-2946)AAG>AAA	p.K982K	SPHKAP_uc002vpp.2_Silent_p.K982K|SPHKAP_uc010zlx.1_Silent_p.K982K	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	982						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		GGCTCTCTTTCTTCCTCTTCA	0.527000													38	30					0	0	0.003755	0	0
SLC16A14	151473	broad.mit.edu	37	2	230910783	230910783	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:230910783G>A	uc002vqd.1	-	4	1422	c.1059C>T	c.(1057-1059)TTC>TTT	p.F353F	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.F353F|SLC16A14_uc002vqf.2_Silent_p.F353F	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	353	Helical; (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		ACGTCAGAGGGAAAACGTCGT	0.428000													23	31					0	0	0.002780	0	0
SLC16A14	151473	broad.mit.edu	37	2	230911184	230911184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:230911184C>T	uc002vqd.1	-	4	1021	c.658G>A	c.(658-660)GAC>AAC	p.D220N	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Missense_Mutation_p.D220N|SLC16A14_uc002vqf.2_Missense_Mutation_p.D220N	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	220	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		TCTCCTGGGTCGTTTGGGTTT	0.552000													28	34					0	0	0.007291	0	0
PDE6D	5147	broad.mit.edu	37	2	232603828	232603828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:232603828G>A	uc002vse.1	-	2	271	c.121C>T	c.(121-123)CCT>TCT	p.P41S	PDE6D_uc002vsf.1_Missense_Mutation_p.P41S	NM_002601	NP_002592	O43924	PDE6D_HUMAN	phosphodiesterase 6D	41					regulation of GTP catabolic process|response to stimulus|visual perception		3',5'-cyclic-nucleotide phosphodiesterase activity|GTPase inhibitor activity|protein binding				0		all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.142)		Epithelial(121;2.19e-12)|BRCA - Breast invasive adenocarcinoma(100;0.00145)|LUSC - Lung squamous cell carcinoma(224;0.0125)|Lung(119;0.0154)		TCCACACCAGGGACAGACAGG	0.453000													56	55					0	0	0.003610	0	0
OR6B2	389090	broad.mit.edu	37	2	240969686	240969686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:240969686G>A	uc002vyr.2	-	2	207	c.161C>T	c.(160-162)TCC>TTC	p.S54F	OR6B2_uc010zoc.1_Missense_Mutation_p.S54F	NM_001005853	NP_001005853	Q6IFH4	OR6B2_HUMAN	olfactory receptor, family 6, subfamily B,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;3.4e-29)|all cancers(36;2.08e-27)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)		CCTGTGGAGGGAGGTGCTGCT	0.567000													32	139					0	0	0.006230	0	0
PRR21	643905	broad.mit.edu	37	2	240981437	240981437	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:240981437G>A	uc010zod.1	-	1	963	c.963C>T	c.(961-963)TTC>TTT	p.F321F		NM_001080835	NP_001074304	Q8WXC7	PRR21_HUMAN	proline rich 21	321										ovary(1)|skin(1)	2						AGGCATGGACGAAGGGCCGTG	0.597000													74	95					0	0	0.003610	0	0
OR6B3	150681	broad.mit.edu	37	2	240985329	240985329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:240985329G>A	uc010zoe.1	-	1	161	c.161C>T	c.(160-162)TCC>TTC	p.S54F	PRR21_uc010zod.1_5'Flank	NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	54	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		CCTGTGGAGGGAGGTGCTGCT	0.567000													19	75					0	0	0.003330	0	0
NEU4	129807	broad.mit.edu	37	2	242755727	242755727	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr2:242755727G>A	uc010fzr.2	+	2	132	c.46G>A	c.(46-48)GAG>AAG	p.E16K	NEU4_uc002wcl.2_RNA|NEU4_uc002wcm.2_Missense_Mutation_p.E16K|NEU4_uc002wcn.1_Missense_Mutation_p.E28K|NEU4_uc002wco.1_Missense_Mutation_p.E16K|NEU4_uc002wcp.1_Missense_Mutation_p.E28K	NM_080741	NP_542779	Q8WWR8	NEUR4_HUMAN	sialidase 4	16						lysosomal lumen|organelle inner membrane	exo-alpha-sialidase activity|protein binding				0		all_cancers(19;1.09e-40)|all_epithelial(40;2.03e-18)|Breast(86;1.53e-05)|all_lung(227;0.00338)|Renal(207;0.00502)|Ovarian(221;0.00716)|Lung NSC(271;0.012)|Esophageal squamous(248;0.129)|Melanoma(123;0.144)|all_hematologic(139;0.158)|all_neural(83;0.243)|Hepatocellular(293;0.244)		Epithelial(32;3.84e-33)|all cancers(36;8.08e-31)|OV - Ovarian serous cystadenocarcinoma(60;7.41e-15)|Kidney(56;3.04e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.63e-06)|Lung(119;0.000152)|LUSC - Lung squamous cell carcinoma(224;0.00154)|Colorectal(34;0.0129)|COAD - Colon adenocarcinoma(134;0.0825)		CTTCGAGCGGGAGAGGACGGG	0.692000													20	18					0	0	0.002780	0	0
PLCB1	23236	broad.mit.edu	37	20	8713998	8713998	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:8713998G>A	uc002wnb.2	+	19	2005	c.2002G>A	c.(2002-2004)GGC>AGC	p.G668S	PLCB1_uc010zrb.1_Missense_Mutation_p.G567S|PLCB1_uc002wna.2_Missense_Mutation_p.G668S|PLCB1_uc002wnc.1_Missense_Mutation_p.G567S|PLCB1_uc002wnd.1_Missense_Mutation_p.G245S	NM_015192	NP_056007	Q9NQ66	PLCB1_HUMAN	phosphoinositide-specific phospholipase C beta 1	668	C2.				activation of meiosis involved in egg activation|CD24 biosynthetic process|cerebral cortex development|G1 phase|G2/M transition of mitotic cell cycle|glutamate signaling pathway|insulin-like growth factor receptor signaling pathway|interleukin-1-mediated signaling pathway|interleukin-12-mediated signaling pathway|interleukin-15-mediated signaling pathway|intracellular signal transduction|lipid catabolic process|memory|muscarinic acetylcholine receptor signaling pathway|negative regulation of monocyte extravasation|negative regulation of transcription, DNA-dependent|phosphatidylinositol metabolic process|positive regulation of acrosome reaction|positive regulation of developmental growth|positive regulation of embryonic development|positive regulation of interleukin-12 production|positive regulation of JNK cascade|positive regulation of myoblast differentiation|positive regulation of transcription, DNA-dependent|regulation of fertilization|regulation of G-protein coupled receptor protein signaling pathway|synaptic transmission	cytosol|nuclear chromatin|nuclear speck	calcium ion binding|calmodulin binding|enzyme binding|GTPase activator activity|phosphatidylinositol phospholipase C activity|phosphatidylinositol-4,5-bisphosphate binding|protein homodimerization activity|signal transducer activity			ovary(4)|breast(3)|upper_aerodigestive_tract(2)|skin(2)|lung(1)	12						ATTTACTGAAGGCATCGTAGA	0.398000													25	38					0	0	0.005443	0	0
SLC24A3	57419	broad.mit.edu	37	20	19261689	19261689	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:19261689G>A	uc002wrl.2	+	2	426	c.229G>A	c.(229-231)GAA>AAA	p.E77K	LOC100130264_uc010zsd.1_Intron	NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	77	Extracellular (Potential).					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						TCTGACTTCCGAAGATGCCGG	0.542000													19	19					0	0	0.001216	0	0
C20orf26	26074	broad.mit.edu	37	20	20257922	20257922	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:20257922C>T	uc002wru.2	+	22	2692	c.2616C>T	c.(2614-2616)TCC>TCT	p.S872S	C20orf26_uc010zse.1_Silent_p.S852S|C20orf26_uc002wrw.2_RNA	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	872										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		CGCCCGCCTCCACCATCACCT	0.612000													14	32					0	0	0.002299	0	0
RALGAPA2	57186	broad.mit.edu	37	20	20585995	20585995	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:20585995T>A	uc002wrz.2	-	15	2005	c.1862A>T	c.(1861-1863)GAT>GTT	p.D621V	RALGAPA2_uc010gcx.2_Missense_Mutation_p.D325V|RALGAPA2_uc010zsg.1_Missense_Mutation_p.D22V	NM_020343	NP_065076	Q2PPJ7	RGPA2_HUMAN	akt substrate AS250	621					activation of Ral GTPase activity	cytosol|nucleus	protein heterodimerization activity|Ral GTPase activator activity			ovary(1)	1						AAGAAAGTCATCCCAGAGCTC	0.483000													6	9					0	0	0.001984	0	0
SSTR4	6754	broad.mit.edu	37	20	23016733	23016733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:23016733C>T	uc002wsr.2	+	1	677	c.613C>T	c.(613-615)CCG>TCG	p.P205S		NM_001052	NP_001043	P31391	SSR4_HUMAN	somatostatin receptor 4	205	Extracellular (Potential).				G-protein signaling, coupled to cyclic nucleotide second messenger|negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			ovary(1)	1	Colorectal(13;0.0518)|Lung NSC(19;0.0542)|all_lung(19;0.118)					GTGGCCACACCCGGCCTGGTC	0.652000													33	53					0	0	0.002445	0	0
TPX2	22974	broad.mit.edu	37	20	30371683	30371683	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:30371683C>T	uc002wwp.1	+	12	2070	c.1372C>T	c.(1372-1374)CAT>TAT	p.H458Y	TPX2_uc010gdv.1_Missense_Mutation_p.H494Y	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	458					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			CTTTGAATTTCATTCCAGACC	0.413000													36	54					0	0	0.006999	0	0
DNMT3B	1789	broad.mit.edu	37	20	31374422	31374422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:31374422C>T	uc002wyc.2	+	5	742	c.421C>T	c.(421-423)CCG>TCG	p.P141S	DNMT3B_uc010ztx.1_Intron|DNMT3B_uc010zty.1_Intron|DNMT3B_uc002wyd.2_Missense_Mutation_p.P141S|DNMT3B_uc002wye.2_Missense_Mutation_p.P141S|DNMT3B_uc010gee.2_RNA|DNMT3B_uc010gef.2_RNA|DNMT3B_uc010ztz.1_Intron|DNMT3B_uc010zua.1_Intron|DNMT3B_uc002wyf.2_Missense_Mutation_p.P153S	NM_006892	NP_008823	Q9UBC3	DNM3B_HUMAN	DNA cytosine-5 methyltransferase 3 beta isoform	141	Interaction with DNMT1 and DNMT3A.				negative regulation of histone H3-K9 methylation|positive regulation of gene expression|positive regulation of histone H3-K4 methylation		metal ion binding|protein binding|transcription corepressor activity			lung(3)|ovary(2)	5						CGTGGAGTTCCCGGCTACCAG	0.627000													28	25					0	0	0.001786	0	0
C20orf114	92747	broad.mit.edu	37	20	31878884	31878884	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:31878884G>A	uc002wyw.1	+	5	648	c.487G>A	c.(487-489)GGG>AGG	p.G163R	C20orf114_uc010gej.1_Missense_Mutation_p.G163R	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	163						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CACCAGCCATGGGAGCCTGCG	0.532000													16	20					0	0	0.007413	0	0
EDEM2	55741	broad.mit.edu	37	20	33722742	33722742	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:33722742G>A	uc002xbo.2	-	6	601	c.501C>T	c.(499-501)ACC>ACT	p.T167T	EDEM2_uc010zuv.1_Silent_p.T126T|EDEM2_uc010zus.1_5'UTR|EDEM2_uc002xbq.2_Silent_p.T130T|EDEM2_uc010zut.1_Silent_p.T126T|EDEM2_uc002xbp.2_Silent_p.T15T|EDEM2_uc002xbn.2_Silent_p.T15T|EDEM2_uc002xbr.2_RNA|EDEM2_uc010zuu.1_Intron	NM_018217	NP_060687	Q9BV94	EDEM2_HUMAN	ER degradation enhancer, mannosidase alpha-like	167					post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine|response to unfolded protein	endoplasmic reticulum lumen|endoplasmic reticulum membrane|extracellular region	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity|misfolded protein binding				0			BRCA - Breast invasive adenocarcinoma(18;0.00936)			TGCCAGTGGGGGTCTGAAAGG	0.532000													21	16					0	0	0.003954	0	0
ERGIC3	51614	broad.mit.edu	37	20	34144810	34144810	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:34144810C>T	uc002xct.2	+	11	1015	c.946C>T	c.(946-948)CAA>TAA	p.Q316*	ERGIC3_uc002xcs.2_Nonsense_Mutation_p.Q321*|ERGIC3_uc002xcu.2_Nonsense_Mutation_p.Q331*|ERGIC3_uc002xcv.2_Nonsense_Mutation_p.Q279*	NM_015966	NP_057050	Q9Y282	ERGI3_HUMAN	serologically defined breast cancer antigen 84	316	Lumenal (Potential).				vesicle-mediated transport	endoplasmic reticulum membrane|ER-Golgi intermediate compartment membrane|Golgi apparatus|integral to membrane	protein binding			large_intestine(2)|ovary(1)	3	Lung NSC(9;0.00489)|all_lung(11;0.00729)		BRCA - Breast invasive adenocarcinoma(18;0.0127)			GTTGGGCGACCAAGGCCTTCC	0.607000													22	26					0	0	0.001882	0	0
NDRG3	57446	broad.mit.edu	37	20	35293686	35293686	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:35293686G>A	uc002xfw.2	-	11	793	c.711C>T	c.(709-711)ATC>ATT	p.I237I	NDRG3_uc002xfx.2_Silent_p.I225I|NDRG3_uc010zvq.1_Silent_p.I142I|NDRG3_uc010zvr.1_Silent_p.I125I	NM_032013	NP_114402	Q9UGV2	NDRG3_HUMAN	N-myc downstream regulated gene 3 isoform a	237					cell differentiation|negative regulation of cell growth|spermatogenesis	cytoplasm				ovary(1)	1		Myeloproliferative disorder(115;0.00878)				TGGGTCTTTCGATCTCCAGGT	0.383000													102	113					0	0	0.003610	0	0
C20orf132	140699	broad.mit.edu	37	20	35742546	35742546	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:35742546C>T	uc010zvu.1	-	22	2659	c.2568G>A	c.(2566-2568)GTG>GTA	p.V856V	C20orf132_uc002xgk.2_Silent_p.V478V	NM_152503	NP_689716	Q9H579	CT132_HUMAN	hypothetical protein LOC140699 isoform 1	Error:Variant_position_missing_in_Q9H579_after_alignment											0		Myeloproliferative disorder(115;0.00878)				CATCAGATCTCACCTGGGAAG	0.473000													8	6					0	0	0.003080	0	0
KIAA1755	85449	broad.mit.edu	37	20	36841832	36841832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:36841832C>T	uc002xhy.1	-	14	3487	c.3215G>A	c.(3214-3216)GGG>GAG	p.G1072E	KIAA1755_uc002xhv.1_Missense_Mutation_p.G136E|KIAA1755_uc002xhw.1_Missense_Mutation_p.G127E|KIAA1755_uc002xhx.1_Missense_Mutation_p.G350E	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	1072										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				GGCTGCCACCCCTCTTCGTTC	0.602000													7	5					0	0	0.001984	0	0
BPI	671	broad.mit.edu	37	20	36964043	36964043	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:36964043C>T	uc002xib.2	+	14	1454	c.1392C>T	c.(1390-1392)GTC>GTT	p.V464V		NM_001725	NP_001716	P17213	BPI_HUMAN	bactericidal/permeability-increasing protein	464					defense response to bacterium|negative regulation of interleukin-6 production|negative regulation of interleukin-8 production|negative regulation of macrophage activation|negative regulation of tumor necrosis factor production	extracellular region|integral to plasma membrane	lipid binding|lipopolysaccharide binding			ovary(4)	4		Myeloproliferative disorder(115;0.00878)				CGGCCAGAGTCCAGCTCTACA	0.552000													43	35					0	0	0.003610	0	0
PTPRT	11122	broad.mit.edu	37	20	40944413	40944413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:40944413G>A	uc002xkg.2	-	12	2273	c.2089C>T	c.(2089-2091)CCC>TCC	p.P697S	PTPRT_uc010ggj.2_Missense_Mutation_p.P697S	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	697	Extracellular (Potential).|Fibronectin type-III 4.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CTTTTCAGGGGAGAGAGAGGA	0.493000													41	30					0	0	0.001951	0	0
WFDC12	128488	broad.mit.edu	37	20	43752535	43752535	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:43752535C>T	uc002xnf.1	-	3	306	c.288G>A	c.(286-288)TGG>TGA	p.W96*		NM_080869	NP_543145	Q8WWY7	WFD12_HUMAN	WAP four-disulfide core domain 12 precursor	96					defense response to bacterium	extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				acttggcctcccatcctggct	0.224000													9	7					0	0	0.004482	0	0
ZNFX1	57169	broad.mit.edu	37	20	47869271	47869271	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:47869271G>A	uc002xui.2	-	12	3449	c.3202C>T	c.(3202-3204)CGT>TGT	p.R1068C		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	1068							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TAATTCAGACGGACAAAGGGA	0.502000													48	66					0	0	0.003610	0	0
TSHZ2	128553	broad.mit.edu	37	20	51872404	51872404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:51872404C>T	uc002xwo.2	+	2	3363	c.2407C>T	c.(2407-2409)CCC>TCC	p.P803S		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	803					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			CAAAGTCCTCCCCAAAGCCAC	0.562000													30	44					0	0	0.002836	0	0
CYP24A1	1591	broad.mit.edu	37	20	52774095	52774095	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:52774095C>T	uc002xwv.2	-	10	1664	c.1266G>A	c.(1264-1266)TTG>TTA	p.L422L	CYP24A1_uc002xwu.1_Silent_p.L280L|CYP24A1_uc002xww.2_Intron	NM_000782	NP_000773	Q07973	CP24A_HUMAN	cytochrome P450 family 24 subfamily A	422					hormone biosynthetic process|osteoblast differentiation|vitamin D catabolic process|vitamin D receptor signaling pathway|xenobiotic metabolic process	mitochondrial inner membrane	1-alpha,25-dihydroxyvitamin D3 24-hydroxylase activity|electron carrier activity|heme binding|oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NADH or NADPH as one donor, and incorporation of one atom of oxygen			upper_aerodigestive_tract(1)|ovary(1)|lung(1)	3	Lung NSC(4;1.08e-05)|all_lung(4;2.7e-05)		STAD - Stomach adenocarcinoma(23;0.206)		Calcidiol(DB00146)|Calcitriol(DB00136)|Cholecalciferol(DB00169)|Ergocalciferol(DB00153)|Paricalcitol(DB00910)	CACTGGATCCCAACACCTGGG	0.383000													37	39					0	0	0.007835	0	0
ZNF831	128611	broad.mit.edu	37	20	57768585	57768585	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:57768585G>A	uc002yan.2	+	1	2511	c.2511G>A	c.(2509-2511)GAG>GAA	p.E837E		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	837						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					AGCAACCAGAGCCTGTGAGCG	0.637000													15	30					0	0	0.006122	0	0
CDH26	60437	broad.mit.edu	37	20	58559806	58559806	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:58559806C>T	uc002ybe.2	+	6	954	c.654C>T	c.(652-654)TTC>TTT	p.F218F	CDH26_uc010zzy.1_RNA	NM_177980	NP_817089	Q8IXH8	CAD26_HUMAN	cadherin-like 26 isoform a	218	Cadherin 2.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|central_nervous_system(1)	4	all_lung(29;0.00963)		BRCA - Breast invasive adenocarcinoma(7;5.58e-09)			AAAGTGGTTTCCGGGTTGATC	0.373000													49	75					0	0	0.003610	0	0
YTHDF1	54915	broad.mit.edu	37	20	61834922	61834922	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr20:61834922G>A	uc002yeh.2	-	4	664	c.370C>T	c.(370-372)CCT>TCT	p.P124S	YTHDF1_uc011aaq.1_Missense_Mutation_p.P74S	NM_017798	NP_060268	Q9BYJ9	YTHD1_HUMAN	YTH domain family, member 1	124				FP -> AR (in Ref. 4; BAB62751).						ovary(2)	2						GGGTTTTCAGGGAAAAAATTG	0.547000													32	31					0	0	0.001786	0	0
TPTE	7179	broad.mit.edu	37	21	10996061	10996061	+	RNA	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr21:10996061G>A	uc002yis.1	-	12		c.2125C>T						P56180	TPTE_HUMAN	Homo sapiens putative tyrosine phosphatase mRNA, complete cds.						signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		AGAGCCTGAGGAATCTTTTCT	0.383000													14	49					0	0	0.001855	0	0
CLDN14	23562	broad.mit.edu	37	21	37833796	37833796	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr21:37833796G>A	uc002yvk.1	-	2	340	c.198C>T	c.(196-198)ATC>ATT	p.I66I	CLDN14_uc002yvn.1_Silent_p.I66I|CLDN14_uc002yvo.1_Silent_p.I66I|CLDN14_uc002yvl.1_Silent_p.I66I|CLDN14_uc002yvm.1_Silent_p.I66I	NM_012130	NP_036262	O95500	CLD14_HUMAN	claudin 14	66	Extracellular (Potential).				calcium-independent cell-cell adhesion|protein complex assembly|tight junction assembly	endoplasmic reticulum|integral to membrane|tight junction	identical protein binding|structural molecule activity				0						GGGATCGGTAGATCTGGCACT	0.647000													18	28					0	0	0.006122	0	0
KCNJ15	3772	broad.mit.edu	37	21	39671204	39671204	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr21:39671204C>T	uc002ywv.2	+	4	323	c.21C>T	c.(19-21)GGC>GGT	p.G7G	KCNJ15_uc002yww.2_Silent_p.G7G|KCNJ15_uc002ywx.2_Silent_p.G7G	NM_002243	NP_002234	Q99712	IRK15_HUMAN	potassium inwardly-rectifying channel J15	7	Cytoplasmic (By similarity).				synaptic transmission	integral to plasma membrane	inward rectifier potassium channel activity			ovary(2)|skin(2)|breast(1)|central_nervous_system(1)	6						TTCACATCGGCATGTCCAGCA	0.517000													15	22					0	0	0.004007	0	0
IGSF5	150084	broad.mit.edu	37	21	41143006	41143006	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr21:41143006C>T	uc002yyo.2	+	4	685	c.582C>T	c.(580-582)AGC>AGT	p.S194S		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	194	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				CGGAGCCCAGCGACCTTCAAA	0.557000													7	9					0	0	0.004482	0	0
DSCAM	1826	broad.mit.edu	37	21	41450784	41450784	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr21:41450784C>T	uc002yyq.1	-	26	4993	c.4541G>A	c.(4540-4542)AGG>AAG	p.R1514K	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1514	Extracellular (Potential).|Fibronectin type-III 6.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CCCAAAGGGCCTGTACTCTAG	0.562000													16	17					0	0	0.006122	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45504055	45504055	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr21:45504055C>T	uc002zea.2	+	15	2460	c.2291C>T	c.(2290-2292)TCC>TTC	p.S764F	TRAPPC10_uc010gpo.2_Missense_Mutation_p.S475F|TRAPPC10_uc011afa.1_Missense_Mutation_p.S183F	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	764					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						TCGGTGGGCTCCGTGTGGTTC	0.577000													10	18					0	0	0.000673	0	0
LRRC3	81543	broad.mit.edu	37	21	45877014	45877014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr21:45877014G>A	uc002zfa.2	+	2	780	c.487G>A	c.(487-489)GAC>AAC	p.D163N		NM_030891	NP_112153	Q9BY71	LRRC3_HUMAN	leucine-rich repeat-containing 3 precursor	163						integral to membrane	protein binding				0		Breast(209;0.00908)		COAD - Colon adenocarcinoma(84;0.148)|Lung(125;0.195)		GCTGAAGCTGGACCCCGACTC	0.647000													19	37					0	0	0.001216	0	0
OR11H1	81061	broad.mit.edu	37	22	16449672	16449672	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:16449672G>C	uc011agd.1	-	1	133	c.133C>G	c.(133-135)CTC>GTC	p.L45V		NM_001005239	NP_001005239	Q8NG94	O11H1_HUMAN	olfactory receptor, family 11, subfamily H,	45	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.208)		Kidney(3;0.00216)|KIRC - Kidney renal clear cell carcinoma(3;0.00244)|Lung(27;0.0724)|COAD - Colon adenocarcinoma(3;0.211)		GTAGTAAAGAGTGAGAAGAGG	0.418000													6	19					0	0	0.003080	0	0
KLHL22	84861	broad.mit.edu	37	22	20819167	20819167	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:20819167G>A	uc002zsl.1	-	4	1199	c.1090C>T	c.(1090-1092)CGA>TGA	p.R364*	KLHL22_uc011ahr.1_Nonsense_Mutation_p.R221*|KLHL22_uc002zsm.1_Nonsense_Mutation_p.R364*	NM_032775	NP_116164	Q53GT1	KLH22_HUMAN	kelch-like	364	Kelch 2.				cell division	Cul3-RING ubiquitin ligase complex				lung(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0221)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.00102)|Lung(15;0.0173)			GACTCTGCTCGAAATCCTTGG	0.567000													57	9					0	0	0.003610	0	0
SERPIND1	3053	broad.mit.edu	37	22	21138412	21138412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:21138412G>A	uc002ztb.1	+	3	1109	c.1042G>A	c.(1042-1044)GAA>AAA	p.E348K	PI4KA_uc002zsz.3_Intron|SERPIND1_uc002ztc.2_Missense_Mutation_p.E376K	NM_000185	NP_000176	P05546	HEP2_HUMAN	heparin cofactor II precursor	348					blood coagulation|chemotaxis|regulation of proteolysis	extracellular region	heparin binding|serine-type endopeptidase inhibitor activity				0	all_cancers(11;6.16e-25)|all_epithelial(7;1.02e-22)|Melanoma(16;0.000465)|Ovarian(15;0.00167)|Colorectal(54;0.0332)|all_neural(72;0.142)	Lung SC(17;0.0262)	LUSC - Lung squamous cell carcinoma(15;0.000536)|Lung(15;0.0108)|Epithelial(17;0.196)		Ardeparin(DB00407)	CCTCCAGCTGGAATACGTGGG	0.547000											OREG0026325	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	31	12					0	0	0.001512	0	0
GNAZ	2781	broad.mit.edu	37	22	23465354	23465355	+	Silent	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:23465354_23465355CC>TT	uc002zwu.1	+	3	1341_1342	c.804_805CC>TT	c.(802-807)TTCCTG>TTTTTG	p.268_269FL>FL	RTDR1_uc002zwt.2_Intron	NM_002073	NP_002064	P19086	GNAZ_HUMAN	guanine nucleotide binding protein, alpha z	268_269						endoplasmic reticulum|heterotrimeric G-protein complex|nuclear envelope	G-protein beta/gamma-subunit complex binding|GTP binding|GTPase activity|guanyl-nucleotide exchange factor activity|metabotropic serotonin receptor binding|receptor signaling protein activity			kidney(1)|skin(1)	2	all_hematologic(9;0.0197)|Acute lymphoblastic leukemia(84;0.181)			READ - Rectum adenocarcinoma(21;0.166)		TCATCCTCTTCCTGAACAAGAA	0.550000													35	5					0	0	0.004672	0	0
BCR	613	broad.mit.edu	37	22	23653935	23653935	+	Silent	SNP	C	T	T	rs148447062		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:23653935C>T	uc002zww.2	+	19	3830	c.3234C>T	c.(3232-3234)ATC>ATT	p.I1078I	BCR_uc002zwx.2_Silent_p.I1034I|BCR_uc011aiy.1_Silent_p.I667I	NM_004327	NP_004318	P11274	BCR_HUMAN	breakpoint cluster region isoform 1	1078	Rho-GAP.				regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	ATP binding|GTPase activator activity|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity		BCR/JAK2(6)	haematopoietic_and_lymphoid_tissue(6)|central_nervous_system(3)|urinary_tract(1)|lung(1)|skin(1)	12						TGGAGGAGATCGAGCGCCGAG	0.632000			T	ABL1| FGFR1|JAK2 	CML|ALL|AML								9	2					0	0	0.000673	0	0
KREMEN1	83999	broad.mit.edu	37	22	29534801	29534801	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:29534801C>T	uc011akm.1	+	7	1167	c.1154C>T	c.(1153-1155)GCT>GTT	p.A385V	KREMEN1_uc003ael.2_Intron|KREMEN1_uc011akn.1_Missense_Mutation_p.A268V	NM_032045	NP_114434	Q96MU8	KREM1_HUMAN	kringle-containing transmembrane protein 1	383	Extracellular (Potential).				cell communication|regulation of canonical Wnt receptor signaling pathway|Wnt receptor signaling pathway	integral to membrane|membrane fraction	protein binding			ovary(3)|lung(2)	5						CCCATGGGGGCTGGAAGCCAC	0.552000													18	4					0	0	0.006122	0	0
SFI1	9814	broad.mit.edu	37	22	31927102	31927102	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:31927102C>T	uc003ale.2	+	4	718	c.325C>T	c.(325-327)CCC>TCC	p.P109S	SFI1_uc003ald.1_Intron|SFI1_uc003alf.2_Missense_Mutation_p.P109S|SFI1_uc003alg.2_Intron|SFI1_uc011alp.1_Intron|SFI1_uc011alq.1_Intron|SFI1_uc003alh.2_Intron	NM_001007467	NP_001007468	A8K8P3	SFI1_HUMAN	spindle assembly associated Sfi1 homolog isoform	109					G2/M transition of mitotic cell cycle	centriole|cytosol				central_nervous_system(1)	1						AAGAGTATTTCCCTCTAAAGC	0.318000													33	5					0	0	0.003755	0	0
TMEM184B	25829	broad.mit.edu	37	22	38627296	38627296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:38627296C>T	uc003avf.1	-	4	627	c.403G>A	c.(403-405)GGA>AGA	p.G135R	TMEM184B_uc003avg.1_Missense_Mutation_p.G135R|TMEM184B_uc003avh.1_Missense_Mutation_p.G69R|TMEM184B_uc010gxl.1_RNA	NM_012264	NP_036396	Q9Y519	T184B_HUMAN	transmembrane protein 184B	135	Helical; (Potential).					integral to membrane					0	Melanoma(58;0.045)					CTTTCTCCTCCTAGGTACTCA	0.507000													80	17					0	0	0.003610	0	0
GTPBP1	9567	broad.mit.edu	37	22	39125599	39125599	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:39125599C>T	uc003awg.2	+	11	2003	c.1849C>T	c.(1849-1851)CCA>TCA	p.P617S		NM_004286	NP_004277	O00178	GTPB1_HUMAN	GTP binding protein 1	617					immune response|positive regulation of mRNA catabolic process|signal transduction	cytoplasmic exosome (RNase complex)|cytosol	GTP binding|GTPase activity			ovary(1)	1	Melanoma(58;0.04)					AGGAGCACCCCCACCTGGAGA	0.637000													5	0					0	0	0.001168	0	0
EFCAB6	64800	broad.mit.edu	37	22	43972299	43972299	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr22:43972299C>T	uc003bdy.1	-	26	3513	c.3298G>A	c.(3298-3300)GAT>AAT	p.D1100N	EFCAB6_uc003bdz.1_Missense_Mutation_p.D948N|EFCAB6_uc010gzi.1_Missense_Mutation_p.D948N|EFCAB6_uc010gzj.1_Missense_Mutation_p.D326N	NM_022785	NP_073622	Q5THR3	EFCB6_HUMAN	CAP-binding protein complex interacting protein	1100	EF-hand 12.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	calcium ion binding			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	7		Ovarian(80;0.0247)|all_neural(38;0.025)				TAACAGAAATCCTTAAGAACT	0.318000													49	16					0	0	0.003610	0	0
CNTN4	152330	broad.mit.edu	37	3	2942404	2942404	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:2942404C>T	uc003bpc.2	+	10	1197	c.976C>T	c.(976-978)CAC>TAC	p.H326Y	CNTN4_uc003bpb.1_5'UTR|CNTN4_uc003bpd.1_Missense_Mutation_p.H326Y|CNTN4_uc003bpe.2_5'UTR|CNTN4_uc003bpf.2_5'UTR	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	326	Ig-like C2-type 4.				axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		AAATGATATTCACGTGGCCAT	0.363000													35	53					0	0	0.006230	0	0
GRM7	2917	broad.mit.edu	37	3	7503366	7503366	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:7503366G>A	uc003bqm.2	+	7	1746	c.1472G>A	c.(1471-1473)GGT>GAT	p.G491D	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.G491D|GRM7_uc003bql.2_Missense_Mutation_p.G491D|GRM7_uc003bqn.1_Missense_Mutation_p.G74D|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	491	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	AGCAACCCGGGTTACCGTCTG	0.478000													28	26					0	0	0.002445	0	0
IRAK2	3656	broad.mit.edu	37	3	10276167	10276167	+	Missense_Mutation	SNP	C	T	T	rs141630240		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:10276167C>T	uc003bve.1	+	11	1373	c.1297C>T	c.(1297-1299)CCA>TCA	p.P433S		NM_001570	NP_001561	O43187	IRAK2_HUMAN	interleukin-1 receptor-associated kinase 2	433	Protein kinase.				activation of MAPK activity|I-kappaB kinase/NF-kappaB cascade|inflammatory response|innate immune response|interleukin-1-mediated signaling pathway|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of NF-kappaB transcription factor activity|positive regulation of NF-kappaB transcription factor activity|regulation of cytokine-mediated signaling pathway|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cell surface|cytosol|endosome membrane|plasma membrane	ATP binding|NF-kappaB-inducing kinase activity|protein heterodimerization activity|protein homodimerization activity			lung(5)|breast(3)	8						CAGTGATATTCCAAGCAGCAC	0.597000													19	30					0	0	0.003954	0	0
NUP210	23225	broad.mit.edu	37	3	13370432	13370432	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:13370432G>A	uc003bxv.1	-	31	4208	c.4125C>T	c.(4123-4125)TCC>TCT	p.S1375S		NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	1375	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					CCCTCAGGTAGGAAACAGGGG	0.572000													20	29					0	0	0.002299	0	0
ARPP21	10777	broad.mit.edu	37	3	35835378	35835378	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:35835378C>T	uc003cgb.2	+	20	2631	c.2367C>T	c.(2365-2367)GTC>GTT	p.V789V	ARPP21_uc003cga.2_Silent_p.V770V|ARPP21_uc011axy.1_Silent_p.V790V|ARPP21_uc003cgf.2_Silent_p.V625V|ARPP21_uc003cgg.2_Silent_p.V312V	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	789						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CCAGCACTGTCCCAGTGATGT	0.527000													7	8					0	0	0.001984	0	0
XIRP1	165904	broad.mit.edu	37	3	39230032	39230032	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:39230032G>A	uc003cjk.1	-	2	1126	c.905C>T	c.(904-906)CCC>CTC	p.P302L	XIRP1_uc003cji.2_Missense_Mutation_p.P302L|XIRP1_uc003cjj.2_Intron	NM_194293	NP_919269	Q702N8	XIRP1_HUMAN	xin actin-binding repeat containing 1	302	Xin 7.						actin binding			ovary(4)|breast(2)|central_nervous_system(1)|pancreas(1)	8				KIRC - Kidney renal clear cell carcinoma(284;0.0517)|Kidney(284;0.065)		ACTGACGTCGGGCCGGGCCCC	0.637000													25	27					0	0	0.003330	0	0
CX3CR1	1524	broad.mit.edu	37	3	39307074	39307074	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:39307074C>T	uc003cjl.2	-	2	1019	c.927G>A	c.(925-927)GGG>GGA	p.G309G		NM_001337	NP_001328	P49238	CX3C1_HUMAN	chemokine (C-X3-C motif) receptor 1	309	Cytoplasmic (Potential).				cell adhesion|cellular defense response|chemotaxis|interspecies interaction between organisms|response to wounding	integral to plasma membrane	chemokine receptor activity			lung(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.0557)|Kidney(284;0.0699)		CCAGGCATTTCCCATACAGGT	0.478000													49	59					0	0	0.003610	0	0
CCR8	1237	broad.mit.edu	37	3	39373976	39373976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:39373976G>A	uc010hhr.2	+	2	292	c.154G>A	c.(154-156)GGA>AGA	p.G52R	CCR8_uc003cjm.2_Intron	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	52	Helical; Name=1; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		CAGTCTTCTGGGAAACAGCCT	0.473000													8	24					0	0	0.004482	0	0
ULK4	54986	broad.mit.edu	37	3	41439618	41439618	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:41439618C>T	uc003ckv.3	-	35	3831	c.3630G>A	c.(3628-3630)AAG>AAA	p.K1210K		NM_017886	NP_060356	Q96C45	ULK4_HUMAN	unc-51-like kinase 4	1210							ATP binding|protein serine/threonine kinase activity				0				KIRC - Kidney renal clear cell carcinoma(284;0.214)		TTGGGTCCTCCTTGGATGTCA	0.498000													5	8					0	0	0.001168	0	0
CCRL2	9034	broad.mit.edu	37	3	46449597	46449597	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:46449597G>A	uc003cpp.3	+	2	312	c.27G>A	c.(25-27)GAG>GAA	p.E9E	CCRL2_uc010hjg.2_Silent_p.E21E|CCRL2_uc010hjf.2_Silent_p.E9E	NM_003965	NP_003956	O00421	CCRL2_HUMAN	chemokine (C-C motif) receptor-like 2 isoform 1	9	Extracellular (Potential).				chemotaxis|inflammatory response	integral to plasma membrane	CCR chemokine receptor binding|chemokine receptor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)		TGGCACCAGAGGATGAATATG	0.522000													7	6					0	0	0.003080	0	0
CCDC12	151903	broad.mit.edu	37	3	46965010	46965011	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:46965010_46965011GG>AA	uc011baq.1	-	4	440_441	c.431_432CC>TT	c.(430-432)TCC>TTT	p.S144F	CCDC12_uc003cqo.2_Intron	NM_144716	NP_653317	Q8WUD4	CCD12_HUMAN	coiled-coil domain containing 12	Error:Variant_position_missing_in_Q8WUD4_after_alignment											0		Prostate(884;0.0143)|Ovarian(412;0.0448)|Acute lymphoblastic leukemia(5;0.143)		OV - Ovarian serous cystadenocarcinoma(275;2.2e-56)|BRCA - Breast invasive adenocarcinoma(193;0.00136)|KIRC - Kidney renal clear cell carcinoma(197;0.00703)|Kidney(197;0.00809)		gtgacgagaaggaatggggggc	0.233000											OREG0015545	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	2					0	0	0.004672	0	0
COL7A1	1294	broad.mit.edu	37	3	48628250	48628250	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:48628250C>T	uc003ctz.2	-	13	1638	c.1637_splice	c.e13-1	p.G546_splice		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor						cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGCTCAACCCCTAAGAGAGAA	0.587000													13	27					0	0	0.001855	0	0
COL7A1	1294	broad.mit.edu	37	3	48631024	48631024	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:48631024G>A	uc003ctz.2	-	3	373	c.372C>T	c.(370-372)CTC>CTT	p.L124L		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	124	Nonhelical region (NC1).|VWFA 1.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CAGCCACATGGAGAATTGCAG	0.602000													44	47					0	0	0.003214	0	0
CELSR3	1951	broad.mit.edu	37	3	48669784	48669784	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:48669784G>A	uc003cuf.1	-	41	10694	c.10694C>T	c.(10693-10695)TCC>TTC	p.S3565F	SLC26A6_uc003cug.2_Missense_Mutation_p.S139F|SLC26A6_uc003cuh.2_Missense_Mutation_p.S160F|SLC26A6_uc010hke.2_Missense_Mutation_p.S11F|SLC26A6_uc003cuk.2_Intron|SLC26A6_uc003cui.2_Missense_Mutation_p.S160F|SLC26A6_uc003cuj.2_Missense_Mutation_p.S160F|SLC26A6_uc011bbp.1_Intron	NM_001407	NP_001398	Q9NYQ7	CELR3_HUMAN	cadherin EGF LAG seven-pass G-type receptor 3	Error:Variant_position_missing_in_Q9NYQ7_after_alignment					homophilic cell adhesion|multicellular organismal development|neuropeptide signaling pathway	integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity|protein binding			ovary(5)|upper_aerodigestive_tract(2)|central_nervous_system(2)|skin(2)	11				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		CGGGGCCAGGGATTCTGTCAC	0.607000													20	14					0	0	0.001523	0	0
NCKIPSD	51517	broad.mit.edu	37	3	48719126	48719126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:48719126C>T	uc003cun.2	-	5	780	c.686G>A	c.(685-687)AGC>AAC	p.S229N	NCKIPSD_uc003cum.2_Missense_Mutation_p.S222N|NCKIPSD_uc010hkh.1_Missense_Mutation_p.S229N	NM_016453	NP_057537	Q9NZQ3	SPN90_HUMAN	NCK interacting protein with SH3 domain isoform	229	Ser/Thr-rich.|Pro-rich.				cytoskeleton organization|NLS-bearing substrate import into nucleus|signal transduction	intermediate filament|nucleus	cytoskeletal protein binding|SH3 domain binding				0				BRCA - Breast invasive adenocarcinoma(193;0.000292)|KIRC - Kidney renal clear cell carcinoma(197;0.00549)|Kidney(197;0.00619)		TGGGCTGGAGCTGGTATAGAG	0.662000													12	8					0	0	0.001368	0	0
BSN	8927	broad.mit.edu	37	3	49689785	49689785	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:49689785G>A	uc003cxe.3	+	5	2910	c.2796G>A	c.(2794-2796)AAG>AAA	p.K932K		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	932					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		GTCGCTTCAAGACCATTGAGC	0.617000													39	30					0	0	0.006230	0	0
DNAH1	25981	broad.mit.edu	37	3	52365207	52365207	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:52365207C>T	uc011bef.1	+	7	1176	c.915C>T	c.(913-915)GTC>GTT	p.V305V	DNAH1_uc003ddt.1_Silent_p.V305V	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	305	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGTGCGAGGTCGGCGTCCTGG	0.582000													5	4					0	0	0.000602	0	0
NISCH	11188	broad.mit.edu	37	3	52525525	52525525	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:52525525C>T	uc011beg.1	+	21	3972	c.3900C>T	c.(3898-3900)ACC>ACT	p.T1300T	NISCH_uc003ded.3_Silent_p.T1300T|NISCH_uc003dee.3_Silent_p.T789T|NISCH_uc003deg.1_RNA|NISCH_uc003deh.3_Silent_p.T49T	NM_007184	NP_009115	Q9Y2I1	NISCH_HUMAN	nischarin	1300					apoptosis|cell communication	cytosol|early endosome|plasma membrane|recycling endosome	phosphatidylinositol binding|receptor activity			ovary(3)|central_nervous_system(1)	4				BRCA - Breast invasive adenocarcinoma(193;1.93e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)|OV - Ovarian serous cystadenocarcinoma(275;0.0577)		GGAACAAGACCACAGGTACCC	0.612000													15	12					0	0	0.004007	0	0
STAB1	23166	broad.mit.edu	37	3	52537850	52537850	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:52537850C>T	uc003dej.2	+	9	1028	c.954C>T	c.(952-954)TTC>TTT	p.F318F	STAB1_uc003dei.1_Silent_p.F318F	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	318	Extracellular (Potential).				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CGGGCTGCTTCGCCTTCTGCT	0.657000													27	27					0	0	0.002096	0	0
FLNB	2317	broad.mit.edu	37	3	58107174	58107174	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:58107174C>T	uc003djj.2	+	20	3235	c.3070C>T	c.(3070-3072)CCT>TCT	p.P1024S	FLNB_uc010hne.2_Missense_Mutation_p.P1024S|FLNB_uc003djk.2_Missense_Mutation_p.P1024S|FLNB_uc010hnf.2_Missense_Mutation_p.P1024S|FLNB_uc003djl.2_Missense_Mutation_p.P855S|FLNB_uc003djm.2_Missense_Mutation_p.P855S	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	1024	Filamin 8.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CGATGGACACCCTGTGCCCGG	0.587000													59	63					0	0	0.003610	0	0
EPHA6	285220	broad.mit.edu	37	3	97251213	97251213	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:97251213G>A	uc010how.1	+	11	2255	c.2212G>A	c.(2212-2214)GAA>AAA	p.E738K	EPHA6_uc011bgo.1_RNA|EPHA6_uc011bgp.1_Missense_Mutation_p.E104K|EPHA6_uc003drs.3_Missense_Mutation_p.E130K|EPHA6_uc003drr.3_Missense_Mutation_p.E130K|EPHA6_uc003drt.2_Missense_Mutation_p.E130K|EPHA6_uc010hox.1_RNA	NM_001080448	NP_001073917	Q9UF33	EPHA6_HUMAN	EPH receptor A6 isoform a	643	ATP (By similarity).|Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			stomach(5)|lung(4)|central_nervous_system(3)|breast(1)|skin(1)|ovary(1)|kidney(1)	16						TGAATTTGGAGAAGTCTGTAG	0.378000													6	8					0	0	0.003080	0	0
HGD	3081	broad.mit.edu	37	3	120352102	120352102	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:120352102C>T	uc003edw.2	-	13	1450	c.1080G>A	c.(1078-1080)GGG>GGA	p.G360G	HGD_uc003edv.2_Silent_p.G219G	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	360					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		GACTCCCTCCCCCTGGCAGGA	0.537000													18	21					0	0	0.007413	0	0
SLC15A2	6565	broad.mit.edu	37	3	121642073	121642073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:121642073C>T	uc003eep.2	+	11	1115	c.962C>T	c.(961-963)TCA>TTA	p.S321L	SLC15A2_uc011bjn.1_Missense_Mutation_p.S290L	NM_021082	NP_066568	Q16348	S15A2_HUMAN	peptide transporter 2 isoform a	321					protein transport	integral to plasma membrane	peptide:hydrogen symporter activity|protein binding			skin(1)	1				GBM - Glioblastoma multiforme(114;0.0967)	Cefadroxil(DB01140)	CCCTAGGGTTCACGATGGACT	0.423000													32	45					0	0	0.003271	0	0
PARP14	54625	broad.mit.edu	37	3	122419491	122419491	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:122419491T>A	uc003efq.3	+	6	2149	c.2090T>A	c.(2089-2091)ATA>AAA	p.I697K	PARP14_uc010hrk.2_RNA|PARP14_uc003efr.2_Missense_Mutation_p.I414K|PARP14_uc003efs.1_Missense_Mutation_p.I414K	NM_017554	NP_060024	Q460N5	PAR14_HUMAN	poly (ADP-ribose) polymerase family, member 14	697					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus|plasma membrane	NAD+ ADP-ribosyltransferase activity			ovary(2)|breast(2)|lung(1)|pancreas(1)	6				GBM - Glioblastoma multiforme(114;0.0531)		TGGCCAAAGATAAAGAAGGTA	0.363000													6	9					0	0	0.001984	0	0
KBTBD12	166348	broad.mit.edu	37	3	127642655	127642655	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:127642655C>T	uc010hsr.2	+	1	754	c.751C>T	c.(751-753)CAA>TAA	p.Q251*	KBTBD12_uc003ejy.3_Intron|KBTBD12_uc010hsq.2_Intron|KBTBD12_uc003eka.3_Intron|KBTBD12_uc003ejz.2_Nonsense_Mutation_p.Q251*	NM_207335	NP_997218	Q3ZCT8	KBTBC_HUMAN	kelch domain containing 6	251										ovary(1)	1						TGACATAATTCAAAATGCATT	0.408000													29	43					0	0	0.002445	0	0
SEC61A1	29927	broad.mit.edu	37	3	127786281	127786282	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:127786281_127786282CC>TT	uc003ekb.2	+	10	1177_1178	c.993_994CC>TT	c.(991-996)GGCCCA>GGTTCA	p.P332S	RUVBL1_uc003eke.2_Intron|RUVBL1_uc003ekf.2_Intron|SEC61A1_uc003ekc.2_Missense_Mutation_p.P279S|SEC61A1_uc003ekd.2_Missense_Mutation_p.P212S|SEC61A1_uc003ekg.2_Missense_Mutation_p.P26S	NM_013336	NP_037468	P61619	S61A1_HUMAN	Sec61 alpha 1 subunit	332	Lumenal (Potential).				protein targeting to ER	integral to endoplasmic reticulum membrane	P-P-bond-hydrolysis-driven protein transmembrane transporter activity|protein binding|ribosome binding			ovary(1)	1						CTTCTGGGGGCCCAGCACGTGC	0.480000													44	68					0	0	0.004672	0	0
CPNE4	131034	broad.mit.edu	37	3	131442448	131442448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:131442448G>A	uc003eok.2	-	3	637	c.202C>T	c.(202-204)CGC>TGC	p.R68C	CPNE4_uc011blq.1_Missense_Mutation_p.R86C|CPNE4_uc003eol.2_Missense_Mutation_p.R86C|CPNE4_uc003eom.2_Missense_Mutation_p.R68C	NM_130808	NP_570720	Q96A23	CPNE4_HUMAN	copine IV	68	C2 1.									upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	3						ATGCAGGTGCGAATCACCTCA	0.423000													40	39					0	0	0.002852	0	0
EPHB1	2047	broad.mit.edu	37	3	134670461	134670461	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:134670461G>A	uc003eqt.2	+	3	592	c.372G>A	c.(370-372)AAG>AAA	p.K124K	EPHB1_uc010htz.1_RNA|EPHB1_uc011bly.1_Silent_p.K124K	NM_004441	NP_004432	P54762	EPHB1_HUMAN	ephrin receptor EphB1 precursor	124	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding			lung(11)|ovary(6)|stomach(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|pancreas(1)	30						TTGCCACCAAGAAGTCAGCCT	0.522000													34	47					0	0	0.004289	0	0
ESYT3	83850	broad.mit.edu	37	3	138189764	138189764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:138189764C>T	uc003esk.2	+	17	1862	c.1636C>T	c.(1636-1638)CCC>TCC	p.P546S	ESYT3_uc010hug.2_RNA	NM_031913	NP_114119	A0FGR9	ESYT3_HUMAN	family with sequence similarity 62 (C2 domain	546						integral to membrane|plasma membrane					0						GCTGGAGGTCCCCCTGTGCCA	0.577000													97	136					0	0	0.003610	0	0
TRIM42	287015	broad.mit.edu	37	3	140406642	140406642	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:140406642G>A	uc003eto.1	+	3	1309	c.1118G>A	c.(1117-1119)CGA>CAA	p.R373Q		NM_152616	NP_689829	Q8IWZ5	TRI42_HUMAN	tripartite motif-containing 42	373						intracellular	zinc ion binding			lung(2)|skin(2)|upper_aerodigestive_tract(1)|breast(1)|central_nervous_system(1)	7						GAGGCAAAGCGAAAAGAGATC	0.393000													22	30					0	0	0.002780	0	0
GRK7	131890	broad.mit.edu	37	3	141497624	141497624	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:141497624C>T	uc011bnd.1	+	1	582	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_139209	NP_631948	Q8WTQ7	GRK7_HUMAN	G-protein-coupled receptor kinase 7 precursor	166	RGS.				visual perception	membrane	ATP binding|G-protein coupled receptor kinase activity|signal transducer activity			lung(2)|stomach(1)|ovary(1)|skin(1)	5						TTAAGGATTTCGTGACCAGCG	0.537000													58	74					0	0	0.003610	0	0
CPA3	1359	broad.mit.edu	37	3	148614490	148614490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:148614490C>T	uc003ewm.2	+	11	1302	c.1250C>T	c.(1249-1251)TCC>TTC	p.S417F		NM_001870	NP_001861	P15088	CBPA3_HUMAN	carboxypeptidase A3 precursor	417					proteolysis	stored secretory granule|transport vesicle	metallocarboxypeptidase activity|zinc ion binding			breast(1)|skin(1)	2			LUSC - Lung squamous cell carcinoma(72;0.0934)|Lung(72;0.115)			AAGCATACTTCCTAAAGAACT	0.393000													21	43					0	0	0.001882	0	0
CP	1356	broad.mit.edu	37	3	148904371	148904371	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:148904371C>T	uc003ewy.3	-	11	2266	c.2013G>A	c.(2011-2013)CGG>CGA	p.R671R	CP_uc011bnr.1_Intron|CP_uc003ewx.3_Silent_p.R452R|CP_uc003ewz.2_Silent_p.R671R|CP_uc010hvf.1_Silent_p.R397R	NM_000096	NP_000087	P00450	CERU_HUMAN	ceruloplasmin precursor	671	Plastocyanin-like 4.|F5/8 type A 2.				cellular iron ion homeostasis|copper ion transport|transmembrane transport	extracellular space	chaperone binding|ferroxidase activity			ovary(1)	1		Prostate(884;0.00217)|Hepatocellular(537;0.00826)|Myeloproliferative disorder(1037;0.0122)|all_neural(597;0.0189)|Melanoma(1037;0.152)	LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)		Drotrecogin alfa(DB00055)	CTGTGTCTCTCCGTTCTCCTC	0.458000													27	26					0	0	0.007291	0	0
LRRIQ4	344657	broad.mit.edu	37	3	169540241	169540241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:169540241G>A	uc003fgb.2	+	1	532	c.532G>A	c.(532-534)GAA>AAA	p.E178K		NM_001080460	NP_001073929	A6NIV6	LRIQ4_HUMAN	leucine-rich repeats and IQ motif containing 4	178	LRR 7.										0						AAACCAGTTTGAAGTTTTCCC	0.512000													37	41					0	0	0.004289	0	0
LEPREL1	55214	broad.mit.edu	37	3	189692384	189692384	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:189692384G>A	uc011bsk.1	-	9	1803	c.1415C>T	c.(1414-1416)TCG>TTG	p.S472L	LEPREL1_uc003fsg.2_Missense_Mutation_p.S291L	NM_018192	NP_060662	Q8IVL5	P3H2_HUMAN	leprecan-like 1 isoform a	472					collagen metabolic process|negative regulation of cell proliferation|peptidyl-proline hydroxylation	basement membrane|endoplasmic reticulum|Golgi apparatus	iron ion binding|L-ascorbic acid binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|procollagen-proline 3-dioxygenase activity			breast(3)|ovary(1)	4	all_cancers(143;4.01e-10)|Ovarian(172;0.0925)		Lung(62;4.35e-05)	GBM - Glioblastoma multiforme(93;0.02)	L-Proline(DB00172)|Succinic acid(DB00139)|Vitamin C(DB00126)	CTGTTCTTCCGACAGGACGTT	0.572000													25	21					0	0	0.004656	0	0
ATP13A4	84239	broad.mit.edu	37	3	193210736	193210736	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr3:193210736G>A	uc003ftd.2	-	5	611	c.503C>T	c.(502-504)TCA>TTA	p.S168L	ATP13A4_uc003fte.1_Missense_Mutation_p.S168L|ATP13A4_uc011bsr.1_5'UTR	NM_032279	NP_115655	Q4VNC1	AT134_HUMAN	ATPase type 13A4	168	Extracellular (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(2)	2	all_cancers(143;1.76e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;2.72e-18)|LUSC - Lung squamous cell carcinoma(58;3.55e-06)|Lung(62;4.19e-06)	GBM - Glioblastoma multiforme(46;0.000109)		TGTCAAGCCTGATCCAAATTT	0.318000													15	21					0	0	0.004990	0	0
TACC3	10460	broad.mit.edu	37	4	1730378	1730378	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:1730378C>T	uc003gdo.2	+	4	1357	c.1249C>T	c.(1249-1251)CCG>TCG	p.P417S	TACC3_uc010ibz.2_Missense_Mutation_p.P417S|TACC3_uc003gdp.2_Intron|TACC3_uc010ica.2_5'Flank	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	417						centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			AAACTTCATCCCGTTCGGAGG	0.622000													16	52					0	0	0.001216	0	0
LETM1	3954	broad.mit.edu	37	4	1843137	1843137	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:1843137G>A	uc003gdv.2	-	3	828	c.531C>T	c.(529-531)ATC>ATT	p.I177I	LETM1_uc010icc.2_5'Flank|LETM1_uc011bvg.1_Silent_p.I177I	NM_012318	NP_036450	O95202	LETM1_HUMAN	leucine zipper-EF-hand containing transmembrane	177	Mitochondrial intermembrane (Potential).|LETM1.				cristae formation	integral to membrane|mitochondrial inner membrane	calcium ion binding|protein binding			central_nervous_system(1)	1			all cancers(2;0.00756)|OV - Ovarian serous cystadenocarcinoma(23;0.00989)|Epithelial(3;0.0141)			TGCGTGCCGCGATCTTGGTGT	0.587000													10	29					0	0	0.000673	0	0
FAM193A	8603	broad.mit.edu	37	4	2698261	2698261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:2698261G>A	uc010icl.2	+	16	2926	c.2575G>A	c.(2575-2577)GAA>AAA	p.E859K	FAM193A_uc010ick.2_Missense_Mutation_p.E1059K|FAM193A_uc003gfd.2_Missense_Mutation_p.E859K|FAM193A_uc011bvm.1_Missense_Mutation_p.E881K|FAM193A_uc011bvn.1_Missense_Mutation_p.E859K|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.E713K	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	859										ovary(3)	3						AAATAGCTCCGAAACCAAACC	0.512000													24	24					0	0	0.003330	0	0
PI4K2B	55300	broad.mit.edu	37	4	25270159	25270159	+	Silent	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:25270159T>C	uc003grk.2	+	8	1306	c.1173T>C	c.(1171-1173)TTT>TTC	p.F391F	PI4K2B_uc011bxs.1_Silent_p.F295F	NM_018323	NP_060793	Q8TCG2	P4K2B_HUMAN	phosphatidylinositol 4-kinase type 2 beta	391	PI3K/PI4K.					cytoplasm|membrane	1-phosphatidylinositol 4-kinase activity|ATP binding			ovary(2)|skin(2)	4		Breast(46;0.173)				ACATGAACTTTGTGCAAGATT	0.313000													19	2					0	0	0.001216	0	0
ANAPC4	29945	broad.mit.edu	37	4	25419869	25419869	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:25419869C>T	uc003gro.2	+	29	2421	c.2292C>T	c.(2290-2292)GCC>GCT	p.A764A	ANAPC4_uc003grp.2_Silent_p.A650A|ANAPC4_uc003grq.2_Silent_p.A217A	NM_013367	NP_037499	Q9UJX5	APC4_HUMAN	anaphase-promoting complex subunit 4	764					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|G2/M transition of mitotic cell cycle|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm	protein phosphatase binding|ubiquitin-protein ligase activity			ovary(2)|large_intestine(1)|pancreas(1)|skin(1)	5		Breast(46;0.0503)				AGGAGGAGGCCAGTAATAAGC	0.423000													29	6					0	0	0.002096	0	0
RHOH	399	broad.mit.edu	37	4	40245414	40245414	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:40245414G>A	uc003guz.2	+	3	1132	c.408G>A	c.(406-408)GGG>GGA	p.G136G		NM_004310	NP_004301	Q15669	RHOH_HUMAN	ras homolog gene family, member H precursor	136					negative regulation of I-kappaB kinase/NF-kappaB cascade|regulation of small GTPase mediated signal transduction|regulation of transcription, DNA-dependent|small GTPase mediated signal transduction|T cell differentiation	cytosol|mitochondrion|plasma membrane	GTP binding|GTPase inhibitor activity|kinase inhibitor activity|Rho GTPase binding			ovary(1)|lung(1)	2						CCATGGAAGGGAAGAAACTGG	0.622000													13	9					0	0	0.002450	0	0
IGFBP7	3490	broad.mit.edu	37	4	57976074	57976074	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:57976074G>A	uc003hcn.2	-	1	466	c.444C>T	c.(442-444)ATC>ATT	p.I148I	IGFBP7_uc011cag.1_Silent_p.I148I|uc003hco.2_RNA	NM_001553	NP_001544	Q16270	IBP7_HUMAN	insulin-like growth factor binding protein 7	148	Kazal-like.				cell adhesion|negative regulation of cell proliferation|regulation of cell growth	extracellular space	insulin-like growth factor binding			lung(2)|central_nervous_system(1)	3	Glioma(25;0.08)|all_neural(26;0.181)				Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	TGACCTGGGTGATGGCCTTCT	0.736000													5	0					0	0	0.001168	0	0
SDAD1	55153	broad.mit.edu	37	4	76879000	76879000	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:76879000G>A	uc003hje.3	-	18	1697	c.1578C>T	c.(1576-1578)ATC>ATT	p.I526I	SDAD1_uc003hjf.3_Silent_p.I429I|SDAD1_uc011cbr.1_Silent_p.I489I	NM_018115	NP_060585	Q9NVU7	SDA1_HUMAN	SDA1 domain containing 1	526					protein transport|ribosomal large subunit biogenesis	nucleolus	protein binding			ovary(1)	1			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			TCAGACTTACGATTTCTTGCT	0.423000													112	8					0	0	0.003610	0	0
FRAS1	80144	broad.mit.edu	37	4	79254487	79254487	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:79254487G>A	uc003hlb.2	+	19	2639	c.2199G>A	c.(2197-2199)GGG>GGA	p.G733G	FRAS1_uc003hkw.2_Silent_p.G733G|FRAS1_uc003hkz.2_Silent_p.G437G	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	733	FU 7.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CAGACTGTGGGCCTTCCCATG	0.522000													4	0					0	0	0.000248	0	0
FRAS1	80144	broad.mit.edu	37	4	79308703	79308703	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:79308703C>T	uc003hlb.2	+	29	4263	c.3823C>T	c.(3823-3825)CCT>TCT	p.P1275S	FRAS1_uc003hkw.2_Missense_Mutation_p.P1275S	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1274	CSPG 2.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						CCCGGCAACCCCTATCTATCA	0.488000													12	0					0	0	0.001368	0	0
DSPP	1834	broad.mit.edu	37	4	88533510	88533510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:88533510G>A	uc003hqu.2	+	4	292	c.172G>A	c.(172-174)GGT>AGT	p.G58S		NM_014208	NP_055023	Q9NZW4	DSPP_HUMAN	dentin sialophosphoprotein preproprotein	58					biomineral tissue development|ossification|skeletal system development	proteinaceous extracellular matrix	calcium ion binding|collagen binding|extracellular matrix structural constituent			central_nervous_system(1)	1		Hepatocellular(203;0.114)|all_hematologic(202;0.236)		OV - Ovarian serous cystadenocarcinoma(123;0.000508)		CAAAGAAAGTGGTGTCCTGGT	0.413000													17	2					0	0	0.007413	0	0
GRID2	2895	broad.mit.edu	37	4	94137945	94137945	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:94137945G>A	uc011cdt.1	+	6	1104	c.846G>A	c.(844-846)ACG>ACA	p.T282T	GRID2_uc010ikx.2_Silent_p.T282T|GRID2_uc011cdu.1_Silent_p.T187T|GRID2_uc010ikz.1_5'UTR	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	282	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	GAAGGTTAACGATTATTCGGC	0.398000													4	1					0	0	0.000602	0	0
ADH1C	126	broad.mit.edu	37	4	100268181	100268181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:100268181C>T	uc003huu.2	-	5	326	c.241G>A	c.(241-243)GTG>ATG	p.V81M		NM_000669	NP_000660	P00326	ADH1G_HUMAN	class I alcohol dehydrogenase, gamma subunit	81					ethanol oxidation|xenobiotic metabolic process	cytosol	alcohol dehydrogenase (NAD) activity|zinc ion binding				0				OV - Ovarian serous cystadenocarcinoma(123;1.08e-07)	Fomepizole(DB01213)|NADH(DB00157)	ACTGTAGTCACCCCTTCTCAA	0.458000									Naso-/Oropharyngeal/Laryngeal_Cancer_Familial_Clustering_of				34	10					0	0	0.003610	0	0
ENPEP	2028	broad.mit.edu	37	4	111441401	111441401	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:111441401G>A	uc003iab.3	+	10	1948	c.1606G>A	c.(1606-1608)GAC>AAC	p.D536N		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	536	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AGAAGTAATGGACACCTGGAC	0.383000													12	1					0	0	0.001368	0	0
KIAA1109	84162	broad.mit.edu	37	4	123264571	123264571	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:123264571C>T	uc003ieh.2	+	71	12404	c.12359C>T	c.(12358-12360)TCG>TTG	p.S4120L	KIAA1109_uc003iem.2_Missense_Mutation_p.S476L|KIAA1109_uc003ien.2_Missense_Mutation_p.S54L	NM_015312	NP_056127	Q2LD37	K1109_HUMAN	fragile site-associated protein	4120	Ser-rich.				regulation of cell growth|regulation of epithelial cell differentiation	integral to membrane|nucleus				ovary(8)|skin(2)|pancreas(1)|central_nervous_system(1)	12						GTAGGTTCATCGGGATTAGGC	0.433000													7	2					0	0	0.004482	0	0
SPRY1	10252	broad.mit.edu	37	4	124323209	124323209	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:124323209C>T	uc003ifa.2	+	2	651	c.463C>T	c.(463-465)CGG>TGG	p.R155W	SPRY1_uc003ifb.2_Missense_Mutation_p.R155W	NM_199327	NP_955359	O43609	SPY1_HUMAN	sprouty homolog 1, antagonist of FGF signaling	155					epidermal growth factor receptor signaling pathway|negative regulation of epidermal growth factor receptor signaling pathway	cytosol|lamellipodium|plasma membrane				skin(2)|ovary(1)	3						AAGGGCAATCCGGACCCAGCC	0.522000													18	2					0	0	0.007413	0	0
RBM46	166863	broad.mit.edu	37	4	155719284	155719284	+	Nonsense_Mutation	SNP	T	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:155719284T>G	uc003ioo.2	+	3	646	c.473T>G	c.(472-474)TTA>TGA	p.L158*	RBM46_uc011cim.1_Nonsense_Mutation_p.L158*|RBM46_uc003iop.1_Nonsense_Mutation_p.L158*	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	158	RRM 2.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GAAGAAATTTTAGATGAAATG	0.343000													33	9					0	0	0.003755	0	0
RBM46	166863	broad.mit.edu	37	4	155719287	155719287	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:155719287A>T	uc003ioo.2	+	3	649	c.476A>T	c.(475-477)GAT>GTT	p.D159V	RBM46_uc011cim.1_Missense_Mutation_p.D159V|RBM46_uc003iop.1_Missense_Mutation_p.D159V	NM_144979	NP_659416	Q8TBY0	RBM46_HUMAN	RNA binding motif protein 46	159	RRM 2.						nucleotide binding|RNA binding			central_nervous_system(1)|skin(1)	2	all_hematologic(180;0.24)	Renal(120;0.0854)				GAAATTTTAGATGAAATGAAG	0.343000													34	9					0	0	0.004289	0	0
NPY1R	4886	broad.mit.edu	37	4	164246466	164246466	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:164246466C>T	uc003iqm.1	-	3	1410	c.1144G>A	c.(1144-1146)GAA>AAA	p.E382K	NPY1R_uc011cjj.1_Missense_Mutation_p.E139K	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	382	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				CAGATTTTTTCATTATCATCA	0.378000													31	7					0	0	0.002445	0	0
NPY1R	4886	broad.mit.edu	37	4	164246771	164246771	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:164246771G>A	uc003iqm.1	-	3	1105	c.839C>T	c.(838-840)ACC>ATC	p.T280I	NPY1R_uc011cjj.1_Missense_Mutation_p.T37I	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	280	Helical; Name=6; (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				GTTAAAGATGGTAAGAGGGAG	0.428000													21	2					0	0	0.001523	0	0
MARCH1	55016	broad.mit.edu	37	4	164466772	164466772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:164466772C>T	uc003iqs.1	-	7	1524	c.547G>A	c.(547-549)GAA>AAA	p.E183K	MARCH1_uc003iqr.1_Missense_Mutation_p.E166K	NM_017923	NP_060393	Q8TCQ1	MARH1_HUMAN	membrane-associated RING-CH protein I	183					antigen processing and presentation of peptide antigen via MHC class II|immune response	cytoplasmic vesicle membrane|early endosome membrane|Golgi apparatus|integral to membrane|late endosome membrane|lysosomal membrane|plasma membrane	MHC protein binding|ubiquitin-protein ligase activity|zinc ion binding			lung(2)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				TGCTTGATTTCCTCCGCTGTC	0.433000													17	4					0	0	0.001523	0	0
HAND2	9464	broad.mit.edu	37	4	174450253	174450253	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:174450253G>A	uc003ith.1	-	1	1126	c.188C>T	c.(187-189)TCC>TTC	p.S63F	NBLA00301_uc011ckd.1_5'Flank|NBLA00301_uc003itl.3_5'Flank|NBLA00301_uc003itj.2_5'Flank|NBLA00301_uc010irf.2_5'Flank|NBLA00301_uc010irg.2_5'Flank|NBLA00301_uc010irh.2_5'Flank|NBLA00301_uc010iri.2_5'Flank|NBLA00301_uc010irj.2_5'Flank|NBLA00301_uc010irk.2_5'Flank|NBLA00301_uc010irl.2_5'Flank|NBLA00301_uc010irm.2_5'Flank|NBLA00301_uc010irn.2_5'Flank|NBLA00301_uc003itk.2_5'Flank|HAND2_uc003itg.1_Missense_Mutation_p.S63F|HAND2_uc010ire.1_Missense_Mutation_p.S63F	NM_021973	NP_068808	P61296	HAND2_HUMAN	basic helix-loop-helix transcription factor	63					adult heart development|angiogenesis|apoptosis|cardiac neural crest cell development involved in outflow tract morphogenesis|heart looping|in utero embryonic development|negative regulation of cardiac muscle cell apoptosis|noradrenergic neuron differentiation|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription regulatory region DNA binding|regulation of secondary heart field cardioblast proliferation|thymus development	nuclear chromatin|transcription factor complex	activating transcription factor binding|protein homodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|transcription coactivator activity			skin(1)	1		Prostate(90;0.00601)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0837)|all_hematologic(60;0.107)		all cancers(43;1.37e-18)|Epithelial(43;5.5e-17)|OV - Ovarian serous cystadenocarcinoma(60;3.3e-10)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		GGGGCTGTAGGACAGGGCCAT	0.423000													6	2					0	0	0.003080	0	0
ODZ3	55714	broad.mit.edu	37	4	183675687	183675687	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:183675687G>A	uc003ivd.1	+	21	4204	c.4167G>A	c.(4165-4167)GTG>GTA	p.V1389V	ODZ3_uc003ive.1_Silent_p.V802V	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	1389	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		TTCCCGGAGTGGAATATCCTG	0.493000													12	0					0	0	0.001368	0	0
F11	2160	broad.mit.edu	37	4	187201261	187201261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:187201261G>A	uc003iza.1	+	8	1184	c.851G>A	c.(850-852)AGG>AAG	p.R284K		NM_000128	NP_000119	P03951	FA11_HUMAN	coagulation factor XI precursor	284					blood coagulation, intrinsic pathway|plasminogen activation|positive regulation of fibrinolysis	extracellular space|plasma membrane	heparin binding|serine-type endopeptidase activity				0		all_cancers(14;6.2e-52)|all_epithelial(14;1.62e-38)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|Colorectal(36;0.0161)|all_neural(102;0.202)		OV - Ovarian serous cystadenocarcinoma(60;2.13e-11)|BRCA - Breast invasive adenocarcinoma(30;4.59e-06)|GBM - Glioblastoma multiforme(59;0.000149)|STAD - Stomach adenocarcinoma(60;0.000314)|LUSC - Lung squamous cell carcinoma(40;0.00112)|READ - Rectum adenocarcinoma(43;0.176)	Coagulation Factor IX(DB00100)	CAAAGCTGCAGGCACAGCATC	0.483000													23	1					0	0	0.001882	0	0
TUBB4Q	56604	broad.mit.edu	37	4	190905463	190905463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr4:190905463G>A	uc011clg.1	-	3	224	c.221C>T	c.(220-222)TCT>TTT	p.S74F		NM_020040	NP_064424	Q99867	TBB4Q_HUMAN	tubulin, beta polypeptide 4, member Q	75					'de novo' posttranslational protein folding|microtubule-based movement|protein polymerization	cytoplasm|microtubule	GTP binding|GTPase activity|structural molecule activity				0		all_cancers(14;1.44e-58)|all_epithelial(14;6.32e-41)|all_lung(41;8.13e-17)|Lung NSC(41;2.13e-16)|Breast(6;2.54e-06)|Melanoma(20;0.000263)|Hepatocellular(41;0.00213)|Renal(120;0.0183)|all_hematologic(60;0.0358)|Prostate(90;0.0421)|all_neural(102;0.147)		all cancers(3;4.1e-31)|Epithelial(3;1.44e-30)|OV - Ovarian serous cystadenocarcinoma(60;2.03e-15)|BRCA - Breast invasive adenocarcinoma(30;8.54e-06)|Lung(3;3.23e-05)|STAD - Stomach adenocarcinoma(60;8.24e-05)|LUSC - Lung squamous cell carcinoma(40;0.000184)|GBM - Glioblastoma multiforme(59;0.00839)|READ - Rectum adenocarcinoma(43;0.155)		CGAGCGCACAGAGTCCATGGT	0.692000													10	4					0	0	0.004990	0	0
PLEKHG4B	153478	broad.mit.edu	37	5	143533	143533	+	Missense_Mutation	SNP	C	T	T	rs149661863		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:143533C>T	uc003jak.2	+	3	708	c.658C>T	c.(658-660)CGC>TGC	p.R220C		NM_052909	NP_443141	Q96PX9	PKH4B_HUMAN	pleckstrin homology domain containing, family G	220					regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity			skin(2)	2			all cancers(22;0.0253)|Lung(60;0.113)	Kidney(1;0.119)		GGTGCAGGTCCGCACCAGGAG	0.642000													22	23					0	0	0.002299	0	0
TERT	7015	broad.mit.edu	37	5	1266593	1266593	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:1266593C>T	uc003jcb.1	-	10	2698	c.2640G>A	c.(2638-2640)GCG>GCA	p.A880A	TERT_uc003jbz.1_Silent_p.A76A|TERT_uc003jca.1_Silent_p.A868A|TERT_uc003jcc.1_Silent_p.A880A|TERT_uc003jcd.1_RNA|TERT_uc003jce.1_RNA	NM_198253	NP_937983	O14746	TERT_HUMAN	telomerase reverse transcriptase isoform 1	880	Reverse transcriptase.				anti-apoptosis|DNA strand elongation|replicative senescence|telomere formation via telomerase|telomere maintenance via telomerase	cytoplasm|nucleolus|PML body|telomerase holoenzyme complex	protein homodimerization activity|telomeric DNA binding|telomeric RNA binding|telomeric template RNA reverse transcriptase activity			lung(7)|ovary(2)|central_nervous_system(2)|skin(1)	12	all_cancers(3;3.17e-16)|Lung NSC(6;8.55e-15)|all_lung(6;7.2e-14)|all_epithelial(6;1.87e-10)		Epithelial(17;0.00105)|all cancers(22;0.00178)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|Lung(60;0.185)			GGAAGGTTTTCGCGTGGGTGA	0.557000									TERT_Mutation-Associated_Haematological_Disorders|Congenital_Dyskeratosis|Pulmonary_Fibrosis_Idiopathic				5	11					0	0	0.000602	0	0
DNAH5	1767	broad.mit.edu	37	5	13700913	13700913	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:13700913C>T	uc003jfd.2	-	78	13601	c.13559G>A	c.(13558-13560)TGG>TAG	p.W4520*	DNAH5_uc003jfc.2_Nonsense_Mutation_p.W688*	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	4520					microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTCCTTCATCCATTTGGTGAC	0.478000									Kartagener_syndrome				15	28					0	0	0.004007	0	0
DNAH5	1767	broad.mit.edu	37	5	13922244	13922244	+	Missense_Mutation	SNP	G	A	A	rs139857637		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:13922244G>A	uc003jfd.2	-	5	674	c.632C>T	c.(631-633)TCG>TTG	p.S211L	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	211	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CTGTGCACCCGACAGGACGTT	0.532000									Kartagener_syndrome				6	11					0	0	0.003080	0	0
FBXL7	23194	broad.mit.edu	37	5	15936881	15936881	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:15936881C>T	uc003jfn.1	+	4	1543	c.1062C>T	c.(1060-1062)TAC>TAT	p.Y354Y		NM_012304	NP_036436	Q9UJT9	FBXL7_HUMAN	F-box and leucine-rich repeat protein 7	354	LRR 7.				ubiquitin-dependent protein catabolic process	ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			ovary(2)|lung(1)	3						GCCTGCGGTACCTGAGCATCG	0.667000													8	8					0	0	0.003080	0	0
CDH18	1016	broad.mit.edu	37	5	19473520	19473520	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:19473520G>A	uc003jgc.2	-	12	2565	c.2188C>T	c.(2188-2190)CCC>TCC	p.P730S	CDH18_uc003jgd.2_Missense_Mutation_p.P730S|CDH18_uc011cnm.1_3'UTR	NM_004934	NP_004925	Q13634	CAD18_HUMAN	cadherin 18, type 2 preproprotein	730	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|large_intestine(1)|skin(1)	7	Lung NSC(1;0.00734)|all_lung(1;0.0197)					TCATAAGGGGGAACGCTAGGG	0.493000													8	19					0	0	0.003080	0	0
CDH10	1008	broad.mit.edu	37	5	24509862	24509862	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:24509862G>A	uc003jgr.1	-	7	1401	c.1069C>T	c.(1069-1071)CCC>TCC	p.P357S	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	357	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		TAAAAACGGGGATCTACATGG	0.368000										HNSCC(23;0.051)			22	26					0	0	0.003330	0	0
CDH9	1007	broad.mit.edu	37	5	26881688	26881688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:26881688C>T	uc003jgs.1	-	12	2096	c.1927G>A	c.(1927-1929)GAA>AAA	p.E643K	CDH9_uc011cnv.1_Missense_Mutation_p.E236K	NM_016279	NP_057363	Q9ULB4	CADH9_HUMAN	cadherin 9, type 2 preproprotein	643	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(5)|skin(2)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)	9						ATCAGAGGTTCCTTTTTTCTT	0.398000													6	12					0	0	0.001984	0	0
PDZD2	23037	broad.mit.edu	37	5	31983716	31983716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:31983716C>T	uc003jhl.2	+	3	1320	c.932C>T	c.(931-933)TCA>TTA	p.S311L	PDZD2_uc003jhm.2_Missense_Mutation_p.S311L|PDZD2_uc011cnx.1_Missense_Mutation_p.S137L	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	311					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CGCCGCTTCTCAAAAGGTGGG	0.473000													28	16					0	0	0.002096	0	0
PDZD2	23037	broad.mit.edu	37	5	32088006	32088006	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:32088006G>A	uc003jhl.2	+	20	4840	c.4452G>A	c.(4450-4452)AGG>AGA	p.R1484R	PDZD2_uc003jhm.2_Silent_p.R1484R	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	1484					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CCTCCCCGAGGAGGGCCTGGG	0.632000													12	9					0	0	0.001368	0	0
Unknown	0	broad.mit.edu	37	5	33162886	33162886	+	RNA	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:33162886G>A	uc003jhx.2	+	1		c.621G>A								full-length cDNA clone CS0DI021YI22 of Placenta Cot 25-normalized of Homo sapiens (human).																		TCTATCTTAGGAAAATCAAGG	0.468000													10	15					0	0	0.001368	0	0
PRLR	5618	broad.mit.edu	37	5	35065992	35065992	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:35065992G>C	uc003jjm.2	-	10	1598	c.1068C>G	c.(1066-1068)AGC>AGG	p.S356R	PRLR_uc003jjg.1_Intron|PRLR_uc003jjh.1_Intron|PRLR_uc003jji.1_Intron|PRLR_uc003jjj.1_Intron|PRLR_uc003jjk.1_Intron|PRLR_uc003jjl.3_Missense_Mutation_p.S255R	NM_000949	NP_000940	P16471	PRLR_HUMAN	prolactin receptor precursor	356	Cytoplasmic (Potential).				activation of JAK2 kinase activity|activation of transmembrane receptor protein tyrosine kinase activity|anti-apoptosis|embryo implantation|lactation|steroid biosynthetic process|T cell activation	cell surface|extracellular region|integral to membrane	metal ion binding|ornithine decarboxylase activator activity|peptide hormone binding|prolactin receptor activity|protein homodimerization activity			ovary(2)|skin(1)	3	all_lung(31;3.83e-05)		COAD - Colon adenocarcinoma(61;0.174)|Colorectal(62;0.229)		Dromostanolone(DB00858)|Fluoxymesterone(DB01185)|Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AAAGGGAAGGGCTGTCACAGC	0.498000													16	13					0	0	0.004007	0	0
SPEF2	79925	broad.mit.edu	37	5	35774065	35774065	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:35774065G>A	uc003jjo.2	+	28	4131	c.4020G>A	c.(4018-4020)AGG>AGA	p.R1340R	SPEF2_uc003jjp.1_Silent_p.R826R|SPEF2_uc003jjr.2_5'UTR	NM_024867	NP_079143	Q9C093	SPEF2_HUMAN	KPL2 protein isoform 1	1340					nucleobase, nucleoside, nucleotide and nucleic acid metabolic process		ATP binding|nucleobase, nucleoside, nucleotide kinase activity|protein dimerization activity			skin(2)|ovary(1)|central_nervous_system(1)	4	all_lung(31;7.56e-05)		Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			AAATCAAAAGGAAAAATGAAC	0.388000													4	3					0	0	0.000248	0	0
EGFLAM	133584	broad.mit.edu	37	5	38438424	38438424	+	Silent	SNP	C	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:38438424C>G	uc003jlc.1	+	17	2655	c.2331C>G	c.(2329-2331)TCC>TCG	p.S777S	EGFLAM_uc003jlb.1_Silent_p.S777S|EGFLAM_uc003jle.1_Silent_p.S543S|EGFLAM_uc003jlf.1_Silent_p.S143S	NM_152403	NP_689616	Q63HQ2	EGFLA_HUMAN	EGF-like, fibronectin type III and laminin G	777	Laminin G-like 2.					cell junction|proteinaceous extracellular matrix|synapse				pancreas(3)|skin(3)|ovary(1)	7	all_lung(31;0.000385)					ACTTCACCTCCGGAGTGAATG	0.512000													11	26					0	0	0.002450	0	0
C7	730	broad.mit.edu	37	5	40947888	40947888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:40947888C>T	uc003jmh.2	+	8	1037	c.923C>T	c.(922-924)TCG>TTG	p.S308L	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	308	MACPF.				complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CAATCTGGGTCGTTAGGAGGA	0.413000													15	7					0	0	0.004990	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41004526	41004526	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:41004526G>A	uc003jmj.3	-	37	4606	c.4116C>T	c.(4114-4116)ATC>ATT	p.I1372I	HEATR7B2_uc003jmi.3_Silent_p.I927I	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	1372	HEAT 15.						binding	p.I1372T(1)		ovary(6)|central_nervous_system(2)	8						GCAGCTCCAGGATTTTTTTTA	0.438000													9	8					0	0	0.000673	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41065530	41065530	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:41065530G>A	uc003jmj.3	-	4	754	c.264C>T	c.(262-264)TTC>TTT	p.F88F		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	88							binding			ovary(6)|central_nervous_system(2)	8						TCACAGAGTTGAAATCATGTG	0.408000													10	18					0	0	0.001368	0	0
C6	729	broad.mit.edu	37	5	41181619	41181619	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:41181619C>T	uc003jmk.2	-	7	979	c.769G>A	c.(769-771)GAT>AAT	p.D257N	C6_uc003jml.1_Missense_Mutation_p.D257N	NM_000065	NP_000056	P13671	CO6_HUMAN	complement component 6 precursor	257	MACPF.				complement activation, classical pathway|cytolysis|innate immune response	membrane attack complex	protein binding			ovary(3)|central_nervous_system(2)|skin(2)	7		Breast(839;1.07e-05)|Ovarian(839;0.0228)|Lung SC(612;0.0548)|Lung NSC(810;0.128)|all_neural(839;0.157)				GAAGTTAAATCCTTGTAGAAA	0.363000													5	7					0	0	0.001168	0	0
SKIV2L2	23517	broad.mit.edu	37	5	54674184	54674184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:54674184C>T	uc003jpy.3	+	17	2119	c.1853C>T	c.(1852-1854)CCC>CTC	p.P618L	SKIV2L2_uc011cqi.1_Missense_Mutation_p.P517L	NM_015360	NP_056175	P42285	SK2L2_HUMAN	superkiller viralicidic activity 2-like 2	618					maturation of 5.8S rRNA	catalytic step 2 spliceosome|nucleolus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			ovary(1)|skin(1)	2		Lung NSC(810;0.000744)|Breast(144;0.181)|Prostate(74;0.194)				ATAGTAATTCCCAATGAAGAA	0.274000													18	17					0	0	0.001882	0	0
RGS7BP	401190	broad.mit.edu	37	5	63802466	63802466	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:63802466G>A	uc003jtj.2	+	1	15	c.15G>A	c.(13-15)CCG>CCA	p.P5P		NM_001029875	NP_001025046	Q6MZT1	R7BP_HUMAN	regulator of G-protein signaling 7 binding	5					negative regulation of signal transduction	cytoplasm|nucleus|plasma membrane					0		Lung NSC(810;0.000518)|Prostate(74;0.0435)|Ovarian(174;0.186)		Lung(70;0.147)		GTTCTGCACCGAATGGGCGCA	0.577000													12	14					0	0	0.000978	0	0
CMYA5	202333	broad.mit.edu	37	5	79032186	79032186	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:79032186C>T	uc003kgc.2	+	2	7670	c.7598C>T	c.(7597-7599)TCT>TTT	p.S2533F		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2533						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		ATTGTTGGTTCTGAAAAGGAG	0.388000													3	1					0	0	0.004672	0	0
CMYA5	202333	broad.mit.edu	37	5	79034731	79034731	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:79034731G>A	uc003kgc.2	+	2	10215	c.10143G>A	c.(10141-10143)GAG>GAA	p.E3381E		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3381						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CCTTCCCGGAGGAAGAATTTG	0.478000													9	3					0	0	0.006214	0	0
CMYA5	202333	broad.mit.edu	37	5	79041142	79041142	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:79041142A>G	uc003kgc.2	+	4	10904	c.10832A>G	c.(10831-10833)GAG>GGG	p.E3611G		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	3611	B-box coiled-coil; BBC.|Potential.					perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CAGAGCTTTGAGGAAGTGAAG	0.443000													2	5					0	0	0.004672	0	0
SPZ1	84654	broad.mit.edu	37	5	79616905	79616905	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:79616905A>G	uc003kgn.2	+	1	1116	c.871A>G	c.(871-873)ACC>GCC	p.T291A	uc011ctk.1_RNA	NM_032567	NP_115956	Q9BXG8	SPZ1_HUMAN	spermatogenic leucine zipper 1	291					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(1)	1		Lung NSC(167;0.0393)|all_lung(232;0.0428)|Ovarian(174;0.113)		OV - Ovarian serous cystadenocarcinoma(54;3.43e-47)|Epithelial(54;2.25e-41)|all cancers(79;4.19e-36)		CGGTTTCCAAACCCAGCCAAA	0.413000													30	26					0	0	0.001786	0	0
VCAN	1462	broad.mit.edu	37	5	82833200	82833200	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:82833200G>A	uc003kii.3	+	8	4734	c.4378G>A	c.(4378-4380)GAA>AAA	p.E1460K	VCAN_uc003kij.3_Missense_Mutation_p.E473K|VCAN_uc010jau.2_Intron|VCAN_uc003kik.3_Intron|VCAN_uc003kil.3_Missense_Mutation_p.E124K	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	1460	GAG-beta.				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		AGCCAAAACGGAATTGTCTAC	0.423000													5	6					0	0	0.000602	0	0
GPR98	84059	broad.mit.edu	37	5	89940622	89940622	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:89940622G>A	uc003kju.2	+	15	2930	c.2834G>A	c.(2833-2835)GGG>GAG	p.G945E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	945	Extracellular (Potential).|Calx-beta 7.				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		CCTGTACAAGGGACTGTTGTC	0.373000													23	24					0	0	0.002299	0	0
FBN2	2201	broad.mit.edu	37	5	127728875	127728875	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:127728875C>T	uc003kuu.2	-	10	1857	c.1418G>A	c.(1417-1419)GGA>GAA	p.G473E	FBN2_uc003kuv.2_Missense_Mutation_p.G440E	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	473					bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CACACCGGCTCCCCCAACGCC	0.562000													18	34					0	0	0.007413	0	0
FBN2	2201	broad.mit.edu	37	5	127800494	127800494	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:127800494G>A	uc003kuu.2	-	6	1188	c.749C>T	c.(748-750)CCC>CTC	p.P250L	FBN2_uc003kuv.2_Missense_Mutation_p.P217L|FBN2_uc003kuw.3_Missense_Mutation_p.P250L|FBN2_uc003kux.1_Missense_Mutation_p.P250L	NM_001999	NP_001990	P35556	FBN2_HUMAN	fibrillin 2 precursor	250	TB 1.				bone trabecula formation|negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta|positive regulation of bone mineralization|positive regulation of osteoblast differentiation	microfibril	calcium ion binding|extracellular matrix structural constituent			ovary(8)|large_intestine(4)|pancreas(1)|kidney(1)|skin(1)	15		all_cancers(142;0.0216)|Prostate(80;0.0551)	KIRC - Kidney renal clear cell carcinoma(527;0.0268)|Kidney(363;0.0488)	OV - Ovarian serous cystadenocarcinoma(64;0.0821)|Epithelial(69;0.146)		CATCTCACAGGGATGGCCCCA	0.602000													14	38					0	0	0.003163	0	0
C5orf20	140947	broad.mit.edu	37	5	134782085	134782085	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:134782085C>T	uc003lav.2	-	1	954	c.714G>A	c.(712-714)AGG>AGA	p.R238R		NM_130848	NP_570900	Q8TF63	DCNP1_HUMAN	dendritic cell nuclear protein 1	238						nucleus					0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			CGTGGGCTGCCCTGCGGTGGG	0.552000													17	81					0	0	0.001523	0	0
GFRA3	2676	broad.mit.edu	37	5	137589837	137589837	+	Silent	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:137589837C>A	uc003lcn.2	-	5	938	c.798G>T	c.(796-798)GTG>GTT	p.V266V	GFRA3_uc003lco.2_Silent_p.V235V	NM_001496	NP_001487	O60609	GFRA3_HUMAN	GDNF family receptor alpha 3 preproprotein	266					peripheral nervous system development	anchored to membrane|cytoplasm|extrinsic to membrane|intracellular membrane-bounded organelle	receptor binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.004)|Kidney(363;0.00592)			TCTGGAAATCCACCAGGCGTG	0.343000													13	31					9.16793e-09	1.98888e-08	0.004990	1	0
PCDHB2	56133	broad.mit.edu	37	5	140475536	140475536	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:140475536C>T	uc003lil.2	+	1	1300	c.1162C>T	c.(1162-1164)CAA>TAA	p.Q388*	PCDHB2_uc003lim.1_Nonsense_Mutation_p.Q49*	NM_018936	NP_061759	Q9Y5E7	PCDB2_HUMAN	protocadherin beta 2 precursor	388	Extracellular (Potential).|Cadherin 4.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(3)|upper_aerodigestive_tract(2)|pancreas(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GTGCTCCATCCAAGATGATCT	0.468000													31	25					0	0	0.001786	0	0
PCDHB7	56129	broad.mit.edu	37	5	140552891	140552891	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:140552891G>A	uc003lit.2	+	1	649	c.475G>A	c.(475-477)GAT>AAT	p.D159N		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	159	Extracellular (Potential).|Cadherin 2.				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GAGTGCACAGGATTCAGATGT	0.448000													21	51					0	0	0.001882	0	0
PCDHB7	56129	broad.mit.edu	37	5	140554422	140554422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:140554422C>T	uc003lit.2	+	1	2180	c.2006C>T	c.(2005-2007)CCC>CTC	p.P669L		NM_018940	NP_061763	Q9Y5E2	PCDB7_HUMAN	protocadherin beta 7 precursor	669	Cadherin 6.|Extracellular (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|central_nervous_system(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			TTCTCCCAGCCCTACCTGCGG	0.692000													42	187					0	0	0.007835	0	0
PCDHGB2	56103	broad.mit.edu	37	5	140742023	140742023	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:140742023T>C	uc003ljs.1	+	1	2321	c.2321T>C	c.(2320-2322)TTG>TCG	p.L774S	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGA5_uc003lju.1_5'Flank|PCDHGB2_uc011dar.1_Missense_Mutation_p.L774S|PCDHGA5_uc011das.1_5'Flank	NM_018923	NP_061746	Q9Y5G2	PCDGE_HUMAN	protocadherin gamma subfamily B, 2 isoform 1	774	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCCCGGAATTGGTTCCCGCG	0.468000													46	121					0	0	0.003610	0	0
FAT2	2196	broad.mit.edu	37	5	150889703	150889703	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:150889703C>A	uc003lue.3	-	21	11951	c.11938G>T	c.(11938-11940)GGG>TGG	p.G3980W	GM2A_uc011dcs.1_Intron|FAT2_uc003lud.3_Missense_Mutation_p.G587W	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	3980	Extracellular (Potential).|EGF-like 1.				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			CAGTGCTTCCCAGAGAACTGT	0.532000													42	44					5.75399e-11	1.25298e-10	0.003610	1	0
SGCD	6444	broad.mit.edu	37	5	155771593	155771593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:155771593G>A	uc003lwd.3	+	2	571	c.95G>A	c.(94-96)CGA>CAA	p.R32Q	SGCD_uc003lwa.1_Missense_Mutation_p.R33Q|SGCD_uc003lwb.2_Missense_Mutation_p.R33Q|SGCD_uc003lwc.3_Missense_Mutation_p.R33Q	NM_001128209	NP_001121681	Q92629	SGCD_HUMAN	delta-sarcoglycan isoform 3	32	Cytoplasmic (Potential).				cytoskeleton organization|muscle organ development	cytoplasm|cytoskeleton|integral to membrane|sarcoglycan complex|sarcolemma					0	Renal(175;0.00488)	Medulloblastoma(196;0.0378)|all_neural(177;0.106)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGGCGGAAACGATGCCTGTAT	0.483000													99	55					0	0	0.003610	0	0
CYFIP2	26999	broad.mit.edu	37	5	156731368	156731368	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:156731368C>T	uc003lwq.2	+	10	927	c.789C>T	c.(787-789)CTC>CTT	p.L263L	CYFIP2_uc011ddn.1_Silent_p.L237L|CYFIP2_uc011ddo.1_Intron|CYFIP2_uc003lwr.2_Silent_p.L263L|CYFIP2_uc003lws.2_Silent_p.L263L|CYFIP2_uc003lwt.2_Silent_p.L141L|CYFIP2_uc011ddp.1_Intron|CYFIP2_uc003lwp.2_Silent_p.L141L	NM_001037333	NP_001032410	Q96F07	CYFP2_HUMAN	cytoplasmic FMR1 interacting protein 2	263					apoptosis|cell-cell adhesion	cell junction|perinuclear region of cytoplasm|synapse|synaptosome	protein binding				0	Renal(175;0.00212)	Medulloblastoma(196;0.0306)|all_neural(177;0.0897)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			AACATATGCTCCTCAAGGTAA	0.443000													40	115					0	0	0.002522	0	0
DRD1	1812	broad.mit.edu	37	5	174869361	174869361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:174869361C>T	uc003mcz.2	-	2	1687	c.742G>A	c.(742-744)GGA>AGA	p.G248R		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	248	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	ACAGGCTTTCCATTACCTGTG	0.483000													63	57					0	0	0.003610	0	0
CDHR2	54825	broad.mit.edu	37	5	176004529	176004529	+	Missense_Mutation	SNP	G	A	A	rs114930966	by1000genomes	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:176004529G>A	uc003mem.1	+	13	1390	c.1324G>A	c.(1324-1326)GAG>AAG	p.E442K	CDHR2_uc003men.1_Missense_Mutation_p.E442K	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	442	Extracellular (Potential).|Cadherin 4.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGTGGACTACGAGAGGCAGAC	0.701000													13	15					0	0	0.001368	0	0
ADAMTS2	9509	broad.mit.edu	37	5	178555107	178555107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:178555107C>T	uc003mjw.2	-	17	2470	c.2470G>A	c.(2470-2472)GGA>AGA	p.G824R		NM_014244	NP_055059	O95450	ATS2_HUMAN	ADAM metallopeptidase with thrombospondin type 1	824	Spacer.				collagen catabolic process	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(1)|lung(1)|ovary(1)|pancreas(1)	4	all_cancers(89;0.000456)|all_epithelial(37;0.000138)|Renal(175;0.000159)|Lung NSC(126;0.00184)|all_lung(126;0.00326)	all_cancers(40;0.00604)|all_neural(177;0.00411)|Medulloblastoma(196;0.00508)|Lung NSC(249;0.0569)|all_lung(500;0.129)|all_hematologic(541;0.211)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	GBM - Glioblastoma multiforme(465;0.0473)		CGGGTGTCTCCCACCGGGATG	0.577000													16	23					0	0	0.004990	0	0
FARS2	10667	broad.mit.edu	37	6	5404775	5404775	+	Silent	SNP	T	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:5404775T>C	uc010jnv.1	+	3	949	c.613T>C	c.(613-615)TTA>CTA	p.L205L	FARS2_uc003mwr.2_Silent_p.L205L|FARS2_uc003mws.1_Silent_p.L205L	NM_006567	NP_006558	O95363	SYFM_HUMAN	phenylalanyl-tRNA synthetase 2 precursor	205					phenylalanyl-tRNA aminoacylation|tRNA processing	mitochondrial matrix|soluble fraction	ATP binding|magnesium ion binding|phenylalanine-tRNA ligase activity|tRNA binding				0	Ovarian(93;0.11)	all_hematologic(90;0.0104)			L-Phenylalanine(DB00120)	TGGTTTACAGTTATTTGCTGG	0.378000													20	50					0	0	0.002299	0	0
F13A1	2162	broad.mit.edu	37	6	6266803	6266803	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:6266803G>A	uc003mwv.2	-	4	682	c.559C>T	c.(559-561)CCT>TCT	p.P187S	F13A1_uc011dib.1_Missense_Mutation_p.P124S	NM_000129	NP_000120	P00488	F13A_HUMAN	coagulation factor XIII A1 subunit precursor	187					peptide cross-linking|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)|skin(1)	6	Ovarian(93;0.0816)	all_hematologic(90;0.152)			L-Glutamine(DB00130)	TCACACCAAGGATTGAAGAGA	0.328000													15	64					0	0	0.006122	0	0
SYCP2L	221711	broad.mit.edu	37	6	10924846	10924846	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:10924846C>T	uc003mzo.2	+	15	1486	c.1190C>T	c.(1189-1191)TCC>TTC	p.S397F	SYCP2L_uc011din.1_Missense_Mutation_p.S238F|SYCP2L_uc010jow.2_Missense_Mutation_p.S17F	NM_001040274	NP_001035364	Q5T4T6	SYC2L_HUMAN	synaptonemal complex protein 2-like	397						nucleus				ovary(1)|skin(1)	2	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)	Epithelial(50;0.239)			TCACAAGTTtccattcaagct	0.209000													17	45					0	0	0.004990	0	0
OR10C1	442194	broad.mit.edu	37	6	29407980	29407980	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:29407980G>A	uc011dlp.1	+	1	188	c.188G>A	c.(187-189)CGC>CAC	p.R63H	OR11A1_uc010jrh.1_Intron	NM_013941	NP_039229	Q96KK4	O10C1_HUMAN	olfactory receptor, family 10, subfamily C,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TTCTTCCTGCGCACCCTCTCG	0.567000													29	236					0	0	0.002096	0	0
HLA-F	3134	broad.mit.edu	37	6	29693014	29693014	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:29693014G>A	uc010jrl.2	+	4	941	c.817G>A	c.(817-819)GGA>AGA	p.G273R	HLA-F_uc003nnm.3_Intron|HLA-F_uc003nno.3_Missense_Mutation_p.G273R|HLA-F_uc011dlx.1_Missense_Mutation_p.G273R|HLA-F_uc011dly.1_RNA	NM_018950	NP_061823	P30511	HLAF_HUMAN	major histocompatibility complex, class I, F	273	Alpha-3.|Extracellular (Potential).|Ig-like C1-type.				antigen processing and presentation of peptide antigen via MHC class I|interferon-gamma-mediated signaling pathway|regulation of immune response|type I interferon-mediated signaling pathway	integral to membrane|MHC class I protein complex	MHC class I receptor activity				0						GGTGCCTCCTGGAGAGGAACA	0.617000													30	61					0	0	0.002445	0	0
DHX16	8449	broad.mit.edu	37	6	30624244	30624244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:30624244G>A	uc003nqz.2	-	15	2566	c.2354C>T	c.(2353-2355)CCA>CTA	p.P785L	DHX16_uc003nqy.2_Missense_Mutation_p.P304L|DHX16_uc011dmo.1_Missense_Mutation_p.P725L	NM_003587	NP_003578	O60231	DHX16_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 16	785					mRNA processing|RNA splicing	nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(2)|kidney(2)	4						TGTCTCATATGGTGGAGGGTC	0.557000													17	90					0	0	0.007413	0	0
MICB	4277	broad.mit.edu	37	6	31475269	31475269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:31475269C>T	uc003ntn.3	+	5	1101	c.985C>T	c.(985-987)CCT>TCT	p.P329S	MICB_uc011dnm.1_Missense_Mutation_p.P297S|MICB_uc003nto.3_Missense_Mutation_p.P286S	NM_005931	NP_005922	Q29980	MICB_HUMAN	MHC class I polypeptide-related sequence B	329	Helical; (Potential).				antigen processing and presentation|cytolysis|gamma-delta T cell activation|immune response|immune response-activating cell surface receptor signaling pathway|interspecies interaction between organisms|negative regulation of defense response to virus by host|response to heat|response to oxidative stress|response to retinoic acid	integral to plasma membrane|MHC class I protein complex	natural killer cell lectin-like receptor binding				0						TCTCTGTGTCCCTTGTTGCAA	0.463000													31	143					0	0	0.002096	0	0
VARS	7407	broad.mit.edu	37	6	31748828	31748828	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:31748828G>A	uc003nxe.2	-	22	3040	c.2617C>T	c.(2617-2619)CCC>TCC	p.P873S	VARS_uc003nxf.1_5'Flank	NM_006295	NP_006286	P26640	SYVC_HUMAN	valyl-tRNA synthetase	873					translational elongation|valyl-tRNA aminoacylation	cytosol	ATP binding|protein binding|valine-tRNA ligase activity			upper_aerodigestive_tract(1)|ovary(1)|skin(1)	3					L-Valine(DB00161)	ACGTCCAGGGGATCGATGACA	0.622000													102	445					0	0	0.003610	0	0
TNXB	7148	broad.mit.edu	37	6	32037545	32037545	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:32037545G>A	uc003nzl.2	-	15	5574	c.5372C>T	c.(5371-5373)TCC>TTC	p.S1791F		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1873	Fibronectin type-III 11.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GAGGCCCACGGAGTTCTGGGT	0.617000													554	184					0	0	0.003610	0	0
SCUBE3	222663	broad.mit.edu	37	6	35211487	35211487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:35211487G>A	uc003okf.1	+	16	2032	c.2026G>A	c.(2026-2028)GAT>AAT	p.D676N	SCUBE3_uc003okg.1_Missense_Mutation_p.D675N|SCUBE3_uc003okh.1_Missense_Mutation_p.D563N	NM_152753	NP_689966	Q8IX30	SCUB3_HUMAN	signal peptide, CUB domain, EGF-like 3	676					protein heterooligomerization|protein homooligomerization	cell surface|extracellular region	calcium ion binding|protein binding			skin(1)	1						CCCTGGGAGTGATGCCCACGG	0.617000													19	126					0	0	0.001523	0	0
SLC26A8	116369	broad.mit.edu	37	6	35967836	35967836	+	Silent	SNP	G	A	A	rs142275991		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:35967836G>A	uc003olm.2	-	4	489	c.378C>T	c.(376-378)ATC>ATT	p.I126I	SLC26A8_uc003oln.2_Silent_p.I126I|SLC26A8_uc003oll.2_Silent_p.I126I	NM_052961	NP_443193	Q96RN1	S26A8_HUMAN	solute carrier family 26, member 8 isoform a	126	Helical; (Potential).				cell differentiation|meiosis|multicellular organismal development|spermatogenesis	integral to membrane|plasma membrane	anion:anion antiporter activity|chloride channel activity|oxalate transmembrane transporter activity|protein binding|sulfate transmembrane transporter activity			ovary(2)	2						CTGCATAAGCGATGTTGAGAG	0.403000													147	231					0	0	0.003610	0	0
MAPK13	5603	broad.mit.edu	37	6	36103816	36103816	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:36103816C>T	uc003ols.2	+	5	536	c.438C>T	c.(436-438)GTC>GTT	p.V146V	MAPK13_uc003olt.2_RNA	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	146	Protein kinase.				cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						CTGCTGGGGTCGTGCACAGGG	0.582000													39	143					0	0	0.002222	0	0
C6orf89	221477	broad.mit.edu	37	6	36887380	36887380	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:36887380C>T	uc003omx.2	+	8	1136	c.852C>T	c.(850-852)ATC>ATT	p.I284I	C6orf89_uc003omv.2_Silent_p.I178I|C6orf89_uc003omw.2_Silent_p.I291I|C6orf89_uc011dtr.1_Silent_p.I178I|C6orf89_uc003omy.2_Silent_p.I118I	NM_152734	NP_689947	Q6UWU4	CF089_HUMAN	hypothetical protein LOC221477	284						integral to membrane				ovary(1)	1						ACCTATTTATCATTGGCAGCG	0.483000													36	237					0	0	0.002222	0	0
FGD2	221472	broad.mit.edu	37	6	36993606	36993606	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:36993606G>A	uc010jwp.1	+	14	1668	c.1497G>A	c.(1495-1497)CTG>CTA	p.L499L	FGD2_uc003ong.2_Silent_p.L221L|FGD2_uc011dtv.1_Silent_p.L127L|FGD2_uc003onj.1_Silent_p.L76L	NM_173558	NP_775829	Q7Z6J4	FGD2_HUMAN	FYVE, RhoGEF and PH domain containing 2	499	FYVE-type.				actin cytoskeleton organization|apoptosis|filopodium assembly|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Cdc42 GTPase activity|regulation of cell shape|small GTPase mediated signal transduction	cytoskeleton|cytosol|early endosome membrane|Golgi apparatus|lamellipodium|nucleus|ruffle membrane	metal ion binding|Rho guanyl-nucleotide exchange factor activity|small GTPase binding			upper_aerodigestive_tract(1)|lung(1)|pancreas(1)	3						GGGCCGAACTGAAATACGACG	0.627000													43	74					0	0	0.003610	0	0
NCR2	9436	broad.mit.edu	37	6	41303997	41303997	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:41303997G>A	uc003oqh.2	+	2	312	c.225G>A	c.(223-225)ATG>ATA	p.M75I	NCR2_uc003oqi.2_Missense_Mutation_p.M75I|NCR2_uc003oqj.2_Missense_Mutation_p.M75I	NM_004828	NP_004819	O95944	NCTR2_HUMAN	natural cytotoxicity triggering receptor 2	75	Extracellular (Potential).|Ig-like.				cellular defense response	integral to plasma membrane	transmembrane receptor activity			ovary(1)	1	Ovarian(28;0.0327)|Colorectal(47;0.196)					CCAGGACGATGGCTTGGACCT	0.542000													19	79					0	0	0.001216	0	0
PGC	5225	broad.mit.edu	37	6	41711064	41711064	+	Missense_Mutation	SNP	G	T	T	rs149712870	byFrequency	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:41711064G>T	uc003ora.1	-	4	441	c.392C>A	c.(391-393)TCC>TAC	p.S131Y		NM_002630	NP_002621	P20142	PEPC_HUMAN	progastricsin (pepsinogen C) precursor	131					digestion|proteolysis	extracellular space	aspartic-type endopeptidase activity				0	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;0.000132)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00507)			ATACTGCAGGGAGAAGGTCTG	0.622000													93	136					9.86815e-39	2.17906e-38	0.003610	1	0
KLC4	89953	broad.mit.edu	37	6	43040584	43040584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:43040584C>T	uc003otv.1	+	13	1588	c.1511C>T	c.(1510-1512)ACG>ATG	p.T504M	KLC4_uc003otr.1_RNA|KLC4_uc011dvd.1_Missense_Mutation_p.T427M|KLC4_uc003otw.1_Missense_Mutation_p.T522M|KLC4_uc003otx.1_Missense_Mutation_p.T504M|KLC4_uc003oty.1_Missense_Mutation_p.T504M|KLC4_uc003otz.1_Missense_Mutation_p.T504M	NM_201521	NP_958929	Q9NSK0	KLC4_HUMAN	kinesin-like 8 isoform a	504						cytoplasm|kinesin complex|microtubule	microtubule motor activity|protein binding			skin(3)|ovary(1)	4			all cancers(41;0.00169)|Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|OV - Ovarian serous cystadenocarcinoma(102;0.0376)|KIRC - Kidney renal clear cell carcinoma(2;0.0453)			ATCAGCCAGACGAAGGTGGCA	0.493000													27	154					0	0	0.002445	0	0
ZNF318	24149	broad.mit.edu	37	6	43323708	43323708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:43323708G>A	uc003oux.2	-	4	1442	c.1364C>T	c.(1363-1365)CCC>CTC	p.P455L	ZNF318_uc003ouw.2_RNA	NM_014345	NP_055160	Q5VUA4	ZN318_HUMAN	zinc finger protein 318	455					meiosis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	nucleic acid binding|zinc ion binding			ovary(3)|breast(2)|central_nervous_system(1)|skin(1)	7			Colorectal(64;0.00245)|COAD - Colon adenocarcinoma(64;0.00536)|all cancers(41;0.0171)|OV - Ovarian serous cystadenocarcinoma(102;0.0579)			CCCAGGAAGGGGACCCCATTG	0.473000													40	62					0	0	0.007835	0	0
GPR110	266977	broad.mit.edu	37	6	46979926	46979926	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:46979926G>A	uc003oyt.2	-	10	1132	c.933C>T	c.(931-933)TTC>TTT	p.F311F	GPR110_uc011dwl.1_5'UTR	NM_153840	NP_722582	Q5T601	GP110_HUMAN	G-protein coupled receptor 110 isoform 1	311	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(2)|pancreas(1)	3						CAATCATACTGAAATTCTAGA	0.393000													9	46					0	0	0.004482	0	0
MUT	4594	broad.mit.edu	37	6	49427140	49427140	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:49427140G>A	uc003ozg.3	-	2	295	c.40C>T	c.(40-42)CAT>TAT	p.H14Y		NM_000255	NP_000246	P22033	MUTA_HUMAN	methylmalonyl Coenzyme A mutase precursor	14					fatty acid beta-oxidation	mitochondrial matrix	cobalamin binding|metal ion binding|methylmalonyl-CoA mutase activity				0	Lung NSC(77;0.0376)				Cyanocobalamin(DB00115)|Hydroxocobalamin(DB00200)	CTCAGGTAATGAGGTGAAAGT	0.448000													15	93					0	0	0.006122	0	0
BMP5	653	broad.mit.edu	37	6	55625290	55625290	+	Missense_Mutation	SNP	C	T	T	rs147691986		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:55625290C>T	uc003pcq.2	-	5	1781	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	BMP5_uc011dxf.1_Missense_Mutation_p.E357K	NM_021073	NP_066551	P22003	BMP5_HUMAN	bone morphogenetic protein 5 preproprotein	357					cartilage development|cell differentiation|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(2)	2	Lung NSC(77;0.0462)		LUSC - Lung squamous cell carcinoma(124;0.181)			ACATAGAGTTCGTGCTTCTTA	0.348000													15	51					0	0	0.004007	0	0
BEND6	221336	broad.mit.edu	37	6	56882095	56882095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:56882095G>A	uc010kab.2	+	5	1196	c.610G>A	c.(610-612)GAA>AAA	p.E204K	BEND6_uc003pdi.3_Missense_Mutation_p.E106K	NM_152731	NP_689944	Q5SZJ8	BEND6_HUMAN	BEN domain containing 6	204	BEN.										0						TTACACAAATGAATACATGGC	0.383000													9	34					0	0	0.006214	0	0
COL19A1	1310	broad.mit.edu	37	6	70745815	70745815	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:70745815G>A	uc003pfc.1	+	14	1271	c.1154G>A	c.(1153-1155)GGA>GAA	p.G385E	COL19A1_uc010kam.1_Missense_Mutation_p.G281E	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	385	Triple-helical region 2 (COL2).				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GGACCCCCAGGACCACCAGCC	0.328000													21	17					0	0	0.002780	0	0
KCNQ5	56479	broad.mit.edu	37	6	73787510	73787510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:73787510G>A	uc003pgk.2	+	5	1165	c.818G>A	c.(817-819)GGA>GAA	p.G273E	KCNQ5_uc003pgj.3_Missense_Mutation_p.G273E|KCNQ5_uc011dyh.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyi.1_Missense_Mutation_p.G273E|KCNQ5_uc010kat.2_Missense_Mutation_p.G273E|KCNQ5_uc011dyj.1_Missense_Mutation_p.G273E|KCNQ5_uc011dyk.1_Missense_Mutation_p.G32E	NM_019842	NP_062816	Q9NR82	KCNQ5_HUMAN	potassium voltage-gated channel, KQT-like	273	Helical; Name=Segment S5; (Potential).				protein complex assembly|synaptic transmission	voltage-gated potassium channel complex	inward rectifier potassium channel activity			ovary(4)|large_intestine(2)|skin(1)	7		all_epithelial(107;0.116)|Lung NSC(302;0.219)		COAD - Colon adenocarcinoma(1;0.0107)|Colorectal(1;0.0583)		TGGTACATAGGATTTTTGGTT	0.348000													4	5					0	0	0.000248	0	0
COL12A1	1303	broad.mit.edu	37	6	75853084	75853084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:75853084C>T	uc003phs.2	-	26	4877	c.4711G>A	c.(4711-4713)GAT>AAT	p.D1571N	COL12A1_uc003pht.2_Missense_Mutation_p.D407N	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	1571	Fibronectin type-III 11.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						AGTTTCAGATCCTGAGGTCTG	0.428000													13	18					0	0	0.001855	0	0
ELOVL4	6785	broad.mit.edu	37	6	80629208	80629208	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:80629208C>T	uc003pja.3	-	5	917	c.598G>A	c.(598-600)GGG>AGG	p.G200R	ELOVL4_uc011dyt.1_Intron	NM_022726	NP_073563	Q9GZR5	ELOV4_HUMAN	elongation of very long chain fatty acids-like	200	Helical; (Potential).				fatty acid elongation, saturated fatty acid|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	G-protein coupled photoreceptor activity|protein binding|transferase activity, transferring acyl groups other than amino-acyl groups			ovary(1)|skin(1)	2		all_cancers(76;1.83e-05)|Acute lymphoblastic leukemia(125;1.1e-05)|all_hematologic(105;0.00117)|all_epithelial(107;0.011)		BRCA - Breast invasive adenocarcinoma(397;0.0168)	Alpha-Linolenic Acid(DB00132)	GCAGTTAACCCATAGTATGAG	0.348000													15	27					0	0	0.004007	0	0
HTR1E	3354	broad.mit.edu	37	6	87725481	87725481	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:87725481C>T	uc003pli.2	+	2	1132	c.429C>T	c.(427-429)ATC>ATT	p.I143I		NM_000865	NP_000856	P28566	5HT1E_HUMAN	5-hydroxytryptamine (serotonin) receptor 1E	143	Helical; Name=4; (By similarity).				G-protein signaling, coupled to cyclic nucleotide second messenger|synaptic transmission	integral to plasma membrane	protein binding|serotonin binding|serotonin receptor activity			ovary(2)|skin(1)	3		all_cancers(76;7.11e-06)|Acute lymphoblastic leukemia(125;1.2e-09)|Prostate(29;3.51e-09)|all_hematologic(105;7.43e-06)|all_epithelial(107;0.00819)		BRCA - Breast invasive adenocarcinoma(108;0.055)	Eletriptan(DB00216)	CGCTGATGATCCTTACCGTCT	0.582000													23	27					0	0	0.002299	0	0
SPACA1	81833	broad.mit.edu	37	6	88757777	88757777	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:88757777G>A	uc003pmn.2	+	1	271	c.154G>A	c.(154-156)GAA>AAA	p.E52K		NM_030960	NP_112222	Q9HBV2	SACA1_HUMAN	sperm acrosome associated 1 precursor	52	Extracellular (Potential).					integral to membrane					0		all_cancers(76;8.24e-09)|Acute lymphoblastic leukemia(125;2.15e-10)|Prostate(29;4.11e-10)|all_hematologic(105;1.08e-06)|all_epithelial(107;0.00011)		BRCA - Breast invasive adenocarcinoma(108;0.11)		GGAGGAGACCGAAAACAACGA	0.697000													10	10					0	0	0.001368	0	0
CASP8AP2	9994	broad.mit.edu	37	6	90576844	90576844	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:90576844C>T	uc003pnr.2	+	8	4031	c.3835C>T	c.(3835-3837)CAG>TAG	p.Q1279*	CASP8AP2_uc003pns.2_Intron|CASP8AP2_uc003pnt.2_Nonsense_Mutation_p.Q1279*|CASP8AP2_uc011dzz.1_Nonsense_Mutation_p.Q1279*	NM_001137667	NP_001131139	Q9UKL3	C8AP2_HUMAN	caspase 8 associated protein 2	1279					cell cycle|cellular response to mechanical stimulus|induction of apoptosis via death domain receptors|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasm|nucleus	caspase activator activity|death receptor binding|transcription corepressor activity			ovary(2)	2		all_cancers(76;3.64e-09)|Prostate(29;1.16e-10)|Acute lymphoblastic leukemia(125;1.45e-10)|all_hematologic(105;7.74e-07)|all_epithelial(107;4.69e-05)|Lung NSC(302;0.238)		BRCA - Breast invasive adenocarcinoma(108;0.0953)		ACAGACATCCCAGCATGCAAC	0.458000													55	58					0	0	0.003610	0	0
NDUFAF4	29078	broad.mit.edu	37	6	97339238	97339238	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:97339238C>T	uc003pow.2	-	3	360	c.270G>A	c.(268-270)CCG>CCA	p.P90P	NDUFAF4_uc003pov.2_RNA	NM_014165	NP_054884	Q9P032	NDUF4_HUMAN	NADH dehydrogenase (ubiquinone) 1 alpha	90					mitochondrial respiratory chain complex I assembly	mitochondrial membrane	calmodulin binding			ovary(1)	1						TGAATTCCTTCGGCTCTTGAC	0.338000													38	31					0	0	0.007835	0	0
C6orf167	253714	broad.mit.edu	37	6	97615961	97615961	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:97615961G>A	uc003ppb.2	-	20	3261	c.2995C>T	c.(2995-2997)CCT>TCT	p.P999S	C6orf167_uc011eaf.1_Missense_Mutation_p.P959S	NM_198468	NP_940870	Q6ZRQ5	MMS22_HUMAN	hypothetical protein LOC253714	999					double-strand break repair via homologous recombination|replication fork processing	nuclear replication fork	protein binding				0		all_cancers(76;0.000243)|Acute lymphoblastic leukemia(125;7.02e-10)|all_hematologic(75;1.23e-06)|all_epithelial(107;0.148)|Colorectal(196;0.198)		BRCA - Breast invasive adenocarcinoma(108;0.0457)		AGATACAAAGGAAGACTTTTC	0.343000													9	15					0	0	0.001368	0	0
SFRS18	25957	broad.mit.edu	37	6	99860603	99860603	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:99860603C>T	uc003ppo.3	-	4	329	c.101G>A	c.(100-102)TGG>TAG	p.W34*	SFRS18_uc003ppp.3_Nonsense_Mutation_p.W34*|SFRS18_uc011eag.1_Nonsense_Mutation_p.W34*|SFRS18_uc003ppr.2_Nonsense_Mutation_p.W34*|SFRS18_uc003ppt.2_Nonsense_Mutation_p.W34*|SFRS18_uc003pps.2_Nonsense_Mutation_p.W34*	NM_032870	NP_116259	Q8TF01	PNISR_HUMAN	splicing factor, arginine/serine-rich 130	34	Gln-rich.			W -> R (in Ref. 2; BAB55350).		nuclear speck					0		all_cancers(76;1.24e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.00716)|Colorectal(196;0.0691)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0631)		CAATGCAGCCCAATCAATCTG	0.423000													12	12					0	0	0.001855	0	0
PRDM13	59336	broad.mit.edu	37	6	100056660	100056660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:100056660C>T	uc003pqg.1	+	2	449	c.188C>T	c.(187-189)TCC>TTC	p.S63F		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	63	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		TCGGGGGGCTCCCCTCTGGAG	0.612000													16	19					0	0	0.003163	0	0
SIM1	6492	broad.mit.edu	37	6	100838966	100838966	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:100838966C>T	uc003pqj.3	-	11	1779	c.1572G>A	c.(1570-1572)GGG>GGA	p.G524G	SIM1_uc010kcu.2_Silent_p.G524G	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	524	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		AATGACCTCGCCCTAAAAATT	0.383000													20	21					0	0	0.001216	0	0
SIM1	6492	broad.mit.edu	37	6	100841650	100841650	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:100841650G>A	uc003pqj.3	-	10	1490	c.1283C>T	c.(1282-1284)TCC>TTC	p.S428F	SIM1_uc010kcu.2_Missense_Mutation_p.S428F	NM_005068	NP_005059	P81133	SIM1_HUMAN	single-minded homolog 1	428	Single-minded C-terminal.				cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			ovary(4)	4		all_cancers(76;9.88e-06)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0248)|Colorectal(196;0.13)		BRCA - Breast invasive adenocarcinoma(108;0.0774)		GTCGTGCTGGGAGCCAGGCCT	0.602000													26	37					0	0	0.006320	0	0
WISP3	8838	broad.mit.edu	37	6	112386105	112386105	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:112386105G>T	uc003pvm.2	+	4	604	c.494G>T	c.(493-495)TGC>TTC	p.C165F	WISP3_uc003pvn.2_RNA|WISP3_uc003pvo.2_Missense_Mutation_p.C183F	NM_003880	NP_003871	O95389	WISP3_HUMAN	WNT1 inducible signaling pathway protein 3	165					cell-cell signaling|regulation of cell growth|signal transduction	extracellular region|soluble fraction	growth factor activity|insulin-like growth factor binding				0		all_cancers(87;0.000196)|Acute lymphoblastic leukemia(125;1.18e-05)|all_hematologic(75;0.000114)|all_epithelial(87;0.00542)|Colorectal(196;0.0209)		all cancers(137;0.0283)|OV - Ovarian serous cystadenocarcinoma(136;0.0613)|Epithelial(106;0.0827)|GBM - Glioblastoma multiforme(226;0.0972)|BRCA - Breast invasive adenocarcinoma(108;0.246)		GGCAGTCACTGCTCTGGAGCT	0.507000													16	41					1.45105e-14	3.17981e-14	0.006122	1	0
COL10A1	1300	broad.mit.edu	37	6	116442256	116442256	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:116442256C>T	uc003pwm.2	-	3	1119	c.1023G>A	c.(1021-1023)GGG>GGA	p.G341G	NT5DC1_uc003pwj.2_Intron|NT5DC1_uc003pwk.2_Intron|NT5DC1_uc003pwl.2_Intron	NM_000493	NP_000484	Q03692	COAA1_HUMAN	type X collagen alpha 1 precursor	341	Triple-helical region.				skeletal system development	collagen	metal ion binding			central_nervous_system(1)	1		all_cancers(87;0.0176)|all_epithelial(87;0.0263)|Colorectal(196;0.234)		all cancers(137;0.0157)|OV - Ovarian serous cystadenocarcinoma(136;0.0325)|GBM - Glioblastoma multiforme(226;0.0446)|Epithelial(106;0.0711)		GTCCCATATTCCCAGGGGGTC	0.632000													15	15					0	0	0.004007	0	0
ROS1	6098	broad.mit.edu	37	6	117609790	117609790	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:117609790C>T	uc003pxp.1	-	43	7108	c.6909G>A	c.(6907-6909)AGG>AGA	p.R2303R	ROS1_uc011ebi.1_RNA	NM_002944	NP_002935	P08922	ROS_HUMAN	proto-oncogene c-ros-1 protein precursor	2303	Cytoplasmic (Potential).				transmembrane receptor protein tyrosine kinase signaling pathway	membrane fraction|sodium:potassium-exchanging ATPase complex	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(8)|ovary(6)|central_nervous_system(3)|skin(3)|stomach(2)|breast(2)|large_intestine(1)	25		all_cancers(87;0.00846)|all_epithelial(87;0.0242)		GBM - Glioblastoma multiforme(226;0.0387)|OV - Ovarian serous cystadenocarcinoma(136;0.0954)|all cancers(137;0.137)		TCTCTTCTTTCCTCAGACCAC	0.468000			T	GOPC|ROS1	glioblastoma|NSCLC								12	12					0	0	0.002450	0	0
THEMIS	387357	broad.mit.edu	37	6	128134784	128134784	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:128134784G>A	uc003qbi.2	-	5	1321	c.1002C>T	c.(1000-1002)ATC>ATT	p.I334I	THEMIS_uc010kfa.2_Silent_p.I237I|THEMIS_uc011ebt.1_Silent_p.I334I|THEMIS_uc010kfb.2_Silent_p.I299I	NM_001010923	NP_001010923	Q8N1K5	THMS1_HUMAN	thymocyte selection pathway associated isoform	334	CABIT 2.				negative T cell selection|positive T cell selection|T cell receptor signaling pathway	cytoplasm|nucleus				ovary(2)|skin(2)	4						AGCTAGTGGGGATCAAGAAGT	0.458000													16	15					0	0	0.001523	0	0
AHI1	54806	broad.mit.edu	37	6	135639733	135639733	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:135639733G>A	uc003qgi.2	-	26	3734	c.3350C>T	c.(3349-3351)CCT>CTT	p.P1117L	AHI1_uc003qgf.2_RNA|AHI1_uc003qgg.2_Missense_Mutation_p.P567L|AHI1_uc003qgh.2_Missense_Mutation_p.P1117L|AHI1_uc003qgj.2_Missense_Mutation_p.P1117L|AHI1_uc003qgk.3_RNA	NM_001134831	NP_001128303	Q8N157	AHI1_HUMAN	Abelson helper integration site 1 isoform a	1117						adherens junction|cilium|microtubule basal body				ovary(1)|kidney(1)|central_nervous_system(1)	3	Breast(56;0.239)|Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00904)|OV - Ovarian serous cystadenocarcinoma(155;0.00991)		CTTTATCTCAGGAGGCAGTTC	0.413000													3	7					0	0	0.004672	0	0
ECT2L	345930	broad.mit.edu	37	6	139164127	139164127	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:139164127G>A	uc003qif.1	+	4	457	c.354G>A	c.(352-354)TGG>TGA	p.W118*	ECT2L_uc011edq.1_Nonsense_Mutation_p.W49*	NM_001077706	NP_001071174	Q008S8	ECT2L_HUMAN	epithelial cell transforming sequence 2	118	F-box.				regulation of Rho protein signal transduction	intracellular	Rho guanyl-nucleotide exchange factor activity				0						ATTGCTTATGGATGCCCAAAT	0.393000													59	48					0	0	0.003610	0	0
PPIL4	85313	broad.mit.edu	37	6	149855870	149855870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:149855870G>A	uc003qmo.1	-	6	535	c.505C>T	c.(505-507)CCT>TCT	p.P169S	PPIL4_uc010kic.2_Intron|PPIL4_uc003qmp.1_Missense_Mutation_p.P169S	NM_139126	NP_624311	Q8WUA2	PPIL4_HUMAN	peptidylprolyl isomerase-like 4	169					protein folding	nucleus	nucleotide binding|peptidyl-prolyl cis-trans isomerase activity|RNA binding				0		Ovarian(120;0.0164)		OV - Ovarian serous cystadenocarcinoma(155;1.11e-11)|GBM - Glioblastoma multiforme(68;0.0885)		AAATCAGGAGGGTCATCAAAT	0.303000													57	99					0	0	0.003610	0	0
PDE10A	10846	broad.mit.edu	37	6	165806224	165806224	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:165806224G>A	uc003qun.2	-	17	1778	c.1537C>T	c.(1537-1539)CCT>TCT	p.P513S	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.P443S|PDE10A_uc003quo.2_Missense_Mutation_p.P523S	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	513					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	TTGTGATAAGGAACCCGCCGA	0.433000													17	33					0	0	0.001523	0	0
PDE10A	10846	broad.mit.edu	37	6	165809912	165809912	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:165809912G>A	uc003qun.2	-	15	1526	c.1285C>T	c.(1285-1287)CGG>TGG	p.R429W	PDE10A_uc011egj.1_RNA|PDE10A_uc011egk.1_Missense_Mutation_p.R359W|PDE10A_uc003quo.2_Missense_Mutation_p.R439W	NM_006661	NP_006652	Q9Y233	PDE10_HUMAN	phosphodiesterase 10A isoform 2	429					platelet activation|signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cAMP binding|cGMP binding|metal ion binding			ovary(3)|skin(2)	5		Breast(66;0.000425)|Prostate(117;0.104)|Ovarian(120;0.221)		OV - Ovarian serous cystadenocarcinoma(33;1.5e-17)|BRCA - Breast invasive adenocarcinoma(81;1.8e-06)|GBM - Glioblastoma multiforme(31;1.92e-05)	Dipyridamole(DB00975)	ATCGTTACCCGGTAAATGCAC	0.403000													9	58					0	0	0.000978	0	0
GPR31	2853	broad.mit.edu	37	6	167571229	167571230	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:167571229_167571230CC>TT	uc011egq.1	-	1	90_91	c.90_91GG>AA	c.(88-93)CTGGGC>CTAAGC	p.G31S		NM_005299	NP_005290	O00270	GPR31_HUMAN	G protein-coupled receptor 31	31	Helical; Name=1; (Potential).					integral to plasma membrane	G-protein coupled receptor activity				0		Breast(66;1.53e-05)|Ovarian(120;0.0606)		OV - Ovarian serous cystadenocarcinoma(33;4.81e-20)|BRCA - Breast invasive adenocarcinoma(81;4.45e-06)|GBM - Glioblastoma multiforme(31;0.00492)		ACCGCGTTGCCCAGCAGACCCA	0.653000													12	17					0	0	0.004672	0	0
TMEM184A	202915	broad.mit.edu	37	7	1590456	1590456	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:1590456C>T	uc003skv.3	-	3	699	c.382G>A	c.(382-384)GAA>AAA	p.E128K	TMEM184A_uc003skt.3_5'UTR|TMEM184A_uc003skw.3_5'UTR	NM_001097620	NP_001091089	Q6ZMB5	T184A_HUMAN	transmembrane protein 184A	128						integral to membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;5.88e-15)		CGCCCACCTTCGTAGCAGTCC	0.662000													19	27					0	0	0.003330	0	0
CHST12	55501	broad.mit.edu	37	7	2472823	2472823	+	Silent	SNP	C	T	T	rs150939856		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:2472823C>T	uc003smc.2	+	2	684	c.549C>T	c.(547-549)ATC>ATT	p.I183I	CHST12_uc003smd.2_Silent_p.I183I	NM_018641	NP_061111	Q9NRB3	CHSTC_HUMAN	carbohydrate sulfotransferase 12	183	Lumenal (Potential).				dermatan sulfate biosynthetic process	integral to Golgi membrane	3'-phosphoadenosine 5'-phosphosulfate binding|chondroitin 4-sulfotransferase activity|protein binding			kidney(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0847)|OV - Ovarian serous cystadenocarcinoma(56;2.25e-13)		GCGTGATGATCGTGCTGAGCG	0.677000													29	39					0	0	0.001786	0	0
LFNG	3955	broad.mit.edu	37	7	2564882	2564882	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:2564882G>A	uc003smf.2	+	3	528	c.511G>A	c.(511-513)GCC>ACC	p.A171T	LFNG_uc003smg.2_Missense_Mutation_p.A171T	NM_001040167	NP_001035257	Q8NES3	LFNG_HUMAN	lunatic fringe isoform a	171	Lumenal (Potential).				organ morphogenesis	extracellular region|integral to Golgi membrane	O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity				0		Ovarian(82;0.0112)		OV - Ovarian serous cystadenocarcinoma(56;2.54e-14)		CTGCTCGGCCGCCCACAGCCG	0.677000													8	24					0	0	0.004482	0	0
CARD11	84433	broad.mit.edu	37	7	2946452	2946452	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:2946452C>T	uc003smv.2	-	25	3689	c.3285G>A	c.(3283-3285)ACG>ACA	p.T1095T		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	1095	Guanylate kinase-like.				positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		ACTCCTCCTCCGTCTCAGGTC	0.682000			Mis		DLBCL								22	10					0	0	0.003954	0	0
FSCN1	6624	broad.mit.edu	37	7	5642960	5642960	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:5642960C>T	uc003sou.2	+	2	1019	c.905C>T	c.(904-906)ACC>ATC	p.T302I	FSCN1_uc003sov.2_Missense_Mutation_p.T24I|FSCN1_uc003sow.2_Missense_Mutation_p.T24I	NM_003088	NP_003079	Q16658	FSCN1_HUMAN	fascin 1	302					actin filament bundle assembly|cell migration|cell proliferation	cell junction|cytoplasm|filopodium|invadopodium|stress fiber	actin filament binding|drug binding|protein binding, bridging			ovary(1)	1		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.0986)|OV - Ovarian serous cystadenocarcinoma(56;1.21e-13)		GACCGCGACACCAAAAAGTGT	0.632000													26	40					0	0	0.006320	0	0
CREB5	9586	broad.mit.edu	37	7	28547242	28547242	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:28547242C>T	uc003szq.2	+	4	568	c.178C>T	c.(178-180)CCG>TCG	p.P60S	CREB5_uc003szo.2_Missense_Mutation_p.P27S|CREB5_uc003szr.2_Missense_Mutation_p.P53S	NM_182898	NP_878901	Q02930	CREB5_HUMAN	cAMP responsive element binding protein 5	60					positive regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter		protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			skin(2)	2						AGATCAAACTCCGACCCCAAC	0.522000													101	119					0	0	0.003610	0	0
ADCYAP1R1	117	broad.mit.edu	37	7	31146119	31146119	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:31146119G>A	uc003tca.1	+	16	1451	c.1228G>A	c.(1228-1230)GAG>AAG	p.E410K	ADCYAP1R1_uc003tcb.1_Missense_Mutation_p.E389K|ADCYAP1R1_uc003tcc.1_Missense_Mutation_p.E438K|ADCYAP1R1_uc003tcd.1_Missense_Mutation_p.E438K|ADCYAP1R1_uc003tce.1_Missense_Mutation_p.E437K|uc003tcg.2_5'Flank	NM_001118	NP_001109	P41586	PACR_HUMAN	adenylate cyclase activating polypeptide 1	410	Cytoplasmic (Potential).				activation of adenylate cyclase activity|cell differentiation|nerve growth factor receptor signaling pathway|spermatogenesis	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			ovary(1)	1						GGTACAAGCGGAGATCAAGCG	0.617000													11	23					0	0	0.002450	0	0
KIAA0895	23366	broad.mit.edu	37	7	36397176	36397176	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:36397176C>T	uc003tfd.2	-	3	253	c.202G>A	c.(202-204)GAA>AAA	p.E68K	KIAA0895_uc003tfc.2_Missense_Mutation_p.E55K|KIAA0895_uc011kaw.1_5'UTR|KIAA0895_uc003tfb.2_Missense_Mutation_p.E17K|KIAA0895_uc011kax.1_Missense_Mutation_p.E17K|KIAA0895_uc003tfe.2_Missense_Mutation_p.E55K|KIAA0895_uc011kay.1_Missense_Mutation_p.E17K	NM_001100425	NP_001093895	Q8NCT3	K0895_HUMAN	hypothetical protein LOC23366 isoform 1	68											0						TTAGCAAGTTCTTGCTCAGGC	0.333000													15	21					0	0	0.003163	0	0
TARP	445347	broad.mit.edu	37	7	38305114	38305114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:38305114C>T	uc003tge.1	-	5	970	c.593G>A	c.(592-594)GGA>GAA	p.G198E	uc003tfz.1_Intron|TARP_uc003tgb.2_5'UTR|TARP_uc003tgc.1_5'UTR|TARP_uc003tgd.1_5'UTR|TARP_uc010kxi.1_RNA|TARP_uc003tgf.1_RNA|TARP_uc003tgj.1_RNA|TARP_uc003tgh.1_RNA|TARP_uc003tgi.1_RNA|TARP_uc003tgg.1_RNA			A2JGV3	A2JGV3_HUMAN	Homo sapiens TCRgamma alternate reading frame protein (TCRg) mRNA, complete cds.	Error:Variant_position_missing_in_A2JGV3_after_alignment											0						CTCCTGGGATCCCAGAATCGT	0.418000													32	38					0	0	0.003755	0	0
POU6F2	11281	broad.mit.edu	37	7	39247156	39247156	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:39247156C>T	uc003thb.1	+	4	490	c.448C>T	c.(448-450)CAA>TAA	p.Q150*	POU6F2_uc010kxo.2_Nonsense_Mutation_p.Q142*	NM_007252	NP_009183	P78424	PO6F2_HUMAN	POU class 6 homeobox 2 isoform 1	150					central nervous system development|ganglion mother cell fate determination|transcription from RNA polymerase II promoter|visual perception		sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			central_nervous_system(1)	1						CACCAACATCCAAGGGCTGGT	0.542000													8	18					0	0	0.003080	0	0
MRPS24	64951	broad.mit.edu	37	7	43906416	43906416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:43906416G>A	uc003tit.1	-	4	437	c.386C>T	c.(385-387)CCA>CTA	p.P129L		NM_032014	NP_114403	Q96EL2	RT24_HUMAN	mitochondrial ribosomal protein S24 precursor	129					translation	mitochondrial large ribosomal subunit|mitochondrial small ribosomal subunit	protein binding|structural constituent of ribosome				0						GTACTTGTGTGGAGACAACTG	0.532000													38	43					0	0	0.001951	0	0
CDC14C	168448	broad.mit.edu	37	7	48964646	48964646	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:48964646C>T	uc010kyv.1	+	1	490	c.378C>T	c.(376-378)ATC>ATT	p.I126I		NR_003595				SubName: Full=Putative uncharacterized protein MGC26484;												0						GAATATTAATCTTTGGAGATA	0.403000													47	52					0	0	0.003610	0	0
COBL	23242	broad.mit.edu	37	7	51092937	51092937	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:51092937G>A	uc003tpr.3	-	12	3822	c.3637C>T	c.(3637-3639)CCC>TCC	p.P1213S	COBL_uc003tps.2_Intron|COBL_uc011kcl.1_Intron|COBL_uc003tpp.3_Missense_Mutation_p.P999S|COBL_uc003tpq.3_Intron|COBL_uc003tpo.3_Missense_Mutation_p.P755S	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	1213	Poly-Pro.									skin(3)|ovary(2)	5	Glioma(55;0.08)					GCCTGGGAGGGTGGAGGGGGT	0.632000													23	6					0	0	0.001882	0	0
COBL	23242	broad.mit.edu	37	7	51096086	51096086	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:51096086G>A	uc003tpr.3	-	10	2892	c.2707C>T	c.(2707-2709)CTG>TTG	p.L903L	COBL_uc003tps.2_Silent_p.L960L|COBL_uc011kcl.1_Silent_p.L903L|COBL_uc003tpp.3_Silent_p.L689L|COBL_uc003tpq.3_Silent_p.L844L|COBL_uc003tpo.3_Silent_p.L445L	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	903										skin(3)|ovary(2)	5	Glioma(55;0.08)					GGTGCAGCCAGCACTGGCGCC	0.577000													48	43					0	0	0.003610	0	0
COBL	23242	broad.mit.edu	37	7	51111251	51111251	+	Missense_Mutation	SNP	G	A	A	rs138046636		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:51111251G>A	uc003tpr.3	-	8	1420	c.1235C>T	c.(1234-1236)TCC>TTC	p.S412F	COBL_uc003tps.2_Missense_Mutation_p.S469F|COBL_uc011kcl.1_Missense_Mutation_p.S412F|COBL_uc010kzc.2_Missense_Mutation_p.S412F|COBL_uc003tpp.3_Missense_Mutation_p.S198F|COBL_uc003tpq.3_Missense_Mutation_p.S353F	NM_015198	NP_056013	O75128	COBL_HUMAN	cordon-bleu homolog	412								p.S412F(1)		skin(3)|ovary(2)	5	Glioma(55;0.08)					GTCTGAGGGGGAACTCATCAC	0.587000													30	52					0	0	0.004878	0	0
GUSB	2990	broad.mit.edu	37	7	65435305	65435305	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:65435305G>A	uc003tun.2	-	9	1516	c.1440C>T	c.(1438-1440)ACC>ACT	p.T480T	GUSB_uc011kdt.1_Silent_p.T334T	NM_000181	NP_000172	P08236	BGLR_HUMAN	glucuronidase, beta precursor	480					glycosaminoglycan catabolic process	lysosome	beta-glucuronidase activity|cation binding				0						TGCTCACAAAGGTCACAGGCC	0.572000													23	43					0	0	0.003954	0	0
HGF	3082	broad.mit.edu	37	7	81350155	81350155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:81350155G>A	uc003uhl.2	-	10	1342	c.1177C>T	c.(1177-1179)CGT>TGT	p.R393C	HGF_uc003uhm.2_Missense_Mutation_p.R388C	NM_000601	NP_000592	P14210	HGF_HUMAN	hepatocyte growth factor isoform 1	393	Kringle 4.				epithelial to mesenchymal transition|mitosis|platelet activation|platelet degranulation|proteolysis|regulation of branching involved in salivary gland morphogenesis by mesenchymal-epithelial signaling	platelet alpha granule lumen	growth factor activity|serine-type endopeptidase activity			ovary(2)|central_nervous_system(2)	4						CCATTCCCACGATAACAATCT	0.333000													25	28					0	0	0.006320	0	0
PCLO	27445	broad.mit.edu	37	7	82584306	82584306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:82584306C>T	uc003uhx.2	-	5	6252	c.5963G>A	c.(5962-5964)GGA>GAA	p.G1988E	PCLO_uc003uhv.2_Missense_Mutation_p.G1988E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1919					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTGCTCTCTTCCTTTCTGCTG	0.353000													16	28					0	0	0.004990	0	0
TRRAP	8295	broad.mit.edu	37	7	98565117	98565117	+	Silent	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:98565117C>A	uc003upp.2	+	50	7496	c.7287C>A	c.(7285-7287)ACC>ACA	p.T2429T	TRRAP_uc011kis.1_Silent_p.T2411T|TRRAP_uc003upr.2_Silent_p.T2128T	NM_003496	NP_003487	Q9Y4A5	TRRAP_HUMAN	transformation/transcription domain-associated	2429					histone deubiquitination|histone H2A acetylation|histone H4 acetylation|regulation of transcription, DNA-dependent|transcription, DNA-dependent	NuA4 histone acetyltransferase complex|PCAF complex|STAGA complex|transcription factor TFTC complex	phosphotransferase activity, alcohol group as acceptor|protein binding|transcription cofactor activity			ovary(9)|large_intestine(8)|central_nervous_system(6)|skin(6)|stomach(5)|upper_aerodigestive_tract(1)|lung(1)|liver(1)	37	all_cancers(62;6.96e-09)|all_epithelial(64;4.86e-09)|Lung NSC(181;0.01)|all_lung(186;0.016)|Esophageal squamous(72;0.0274)		STAD - Stomach adenocarcinoma(171;0.215)			GGGATGAGACCCTCTCTGGCA	0.532000													29	38					1.08312e-15	2.37654e-15	0.001786	1	0
ZAN	7455	broad.mit.edu	37	7	100352875	100352875	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:100352875G>A	uc003uwj.2	+	15	3316	c.3151G>A	c.(3151-3153)GAA>AAA	p.E1051K	ZAN_uc003uwk.2_Missense_Mutation_p.E1051K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	1051	TIL 1.|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			TGCCCGCTACGAATCCTGTGC	0.567000													94	129					0	0	0.003610	0	0
RELN	5649	broad.mit.edu	37	7	103270438	103270438	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:103270438C>T	uc003vca.2	-	20	2811	c.2651G>A	c.(2650-2652)GGA>GAA	p.G884E	RELN_uc010liz.2_Missense_Mutation_p.G884E	NM_005045	NP_005036	P78509	RELN_HUMAN	reelin isoform a	884					axon guidance|cell adhesion|cerebral cortex tangential migration|glial cell differentiation|neuron migration|peptidyl-tyrosine phosphorylation|positive regulation of protein kinase activity|positive regulation of small GTPase mediated signal transduction|response to pain|spinal cord patterning	cytoplasm|dendrite|extracellular space|proteinaceous extracellular matrix	metal ion binding|protein serine/threonine/tyrosine kinase activity|serine-type peptidase activity			ovary(8)|upper_aerodigestive_tract(5)|large_intestine(2)|central_nervous_system(2)|skin(1)|pancreas(1)	19				COAD - Colon adenocarcinoma(1;8.98e-05)|Colorectal(1;0.00184)		AAGGTAGAATCCCAGAGACTG	0.403000													14	12					0	0	0.004007	0	0
LAMB4	22798	broad.mit.edu	37	7	107684225	107684225	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:107684225G>A	uc010ljo.1	-	29	4527	c.4443C>T	c.(4441-4443)TTC>TTT	p.F1481F	LAMB4_uc003vey.2_Silent_p.F1481F|LAMB4_uc010ljp.1_Silent_p.F450F	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1481	Domain I.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						CTTTTTTGATGAAAAGATTGA	0.289000													19	30					0	0	0.007413	0	0
DOCK4	9732	broad.mit.edu	37	7	111484899	111484899	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:111484899G>A	uc003vfx.2	-	25	2925	c.2656C>T	c.(2656-2658)CTG>TTG	p.L886L	DOCK4_uc003vfw.2_Silent_p.L327L|DOCK4_uc003vfy.2_Silent_p.L886L	NM_014705	NP_055520	Q8N1I0	DOCK4_HUMAN	dedicator of cytokinesis 4	886					cell chemotaxis	cytosol|endomembrane system|membrane|stereocilium	GTP binding|guanyl-nucleotide exchange factor activity|PDZ domain binding|Rac GTPase activator activity|Rac GTPase binding|receptor tyrosine kinase binding|SH3 domain binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)	4		Acute lymphoblastic leukemia(1;0.0441)				GTCCTCAGCAGAATATCCAGC	0.443000													17	31					0	0	0.007413	0	0
ANKRD7	56311	broad.mit.edu	37	7	117865049	117865049	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:117865049G>A	uc003vji.2	+	1	338	c.165G>A	c.(163-165)CAG>CAA	p.Q55Q		NM_019644	NP_062618	Q92527	ANKR7_HUMAN	ankyrin repeat domain 7	55					male gonad development						0						TAAATATGCAGGACAAAAAAT	0.463000													41	54					0	0	0.002852	0	0
GRM8	2918	broad.mit.edu	37	7	126173718	126173718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:126173718G>A	uc003vlr.2	-	8	2029	c.1718C>T	c.(1717-1719)CCC>CTC	p.P573L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Missense_Mutation_p.P573L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	573	Extracellular (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	TTTGATGATGGGGATAAGCTG	0.517000										HNSCC(24;0.065)			12	16					0	0	0.000978	0	0
AKR1B10	57016	broad.mit.edu	37	7	134216695	134216695	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:134216695G>A	uc003vrr.2	+	3	590	c.270G>A	c.(268-270)AGG>AGA	p.R90R		NM_020299	NP_064695	O60218	AK1BA_HUMAN	aldo-keto reductase family 1, member B10	90					cellular aldehyde metabolic process|digestion|steroid metabolic process	cytoplasm	aldo-keto reductase (NADP) activity|protein binding			skin(5)	5						CCCTTGTGAGGAAAGCCTTTG	0.458000													20	32					0	0	0.002780	0	0
ZC3HAV1L	92092	broad.mit.edu	37	7	138713621	138713621	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:138713621G>A	uc003vum.1	-	3	599	c.587C>T	c.(586-588)TCC>TTC	p.S196F		NM_080660	NP_542391	Q96H79	ZCCHL_HUMAN	zinc finger CCCH-type, antiviral 1-like	196											0						TTTCACAAAGGATTTGCACAC	0.443000													24	26					0	0	0.003954	0	0
MGAM	8972	broad.mit.edu	37	7	141752626	141752626	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:141752626G>A	uc003vwy.2	+	26	3055	c.3001G>A	c.(3001-3003)GAC>AAC	p.D1001N		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1001	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	TTTTGTCAACGACCTATACTC	0.443000													13	15					0	0	0.003163	0	0
MGAM	8972	broad.mit.edu	37	7	141805690	141805690	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:141805690G>A	uc003vwy.2	+	48	5627	c.5573G>A	c.(5572-5574)TGA>TAA	p.*1858*		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1858					polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGCACTCTGTGAATTTTTACA	0.328000													33	52					0	0	0.006230	0	0
LOC93432	93432	broad.mit.edu	37	7	141833863	141833863	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:141833863G>A	uc003vwz.2	+	7	717	c.658G>A	c.(658-660)GGG>AGG	p.G220R		NR_003715				RecName: Full=Putative maltase-glucoamylase-like protein LOC93432;												0						CAATGTGTATGGGCTGGGAGA	0.602000													3	0					0	0	0.000248	0	0
TRPV5	56302	broad.mit.edu	37	7	142612183	142612183	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:142612183C>T	uc003wby.1	-	11	1584	c.1320G>A	c.(1318-1320)ATG>ATA	p.M440I		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	440	Helical; (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GCCGCATCACCATGGTCACCA	0.552000													7	9					0	0	0.001984	0	0
TAS2R41	259287	broad.mit.edu	37	7	143175689	143175689	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:143175689C>T	uc003wdc.1	+	1	724	c.724C>T	c.(724-726)CTT>TTT	p.L242F	uc003wda.2_Intron	NM_176883	NP_795364	P59536	T2R41_HUMAN	taste receptor, type 2, member 41	242	Helical; Name=6; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			pancreas(1)|skin(1)	2	Melanoma(164;0.15)					CTTCCTCATTCTTTATGCTCT	0.512000													15	9					0	0	0.004990	0	0
OR2A2	442361	broad.mit.edu	37	7	143807322	143807322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:143807322C>T	uc011ktz.1	+	1	647	c.647C>T	c.(646-648)TCC>TTC	p.S216F		NM_001005480	NP_001005480	Q6IF42	OR2A2_HUMAN	olfactory receptor, family 2, subfamily A,	216	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2	Melanoma(164;0.0783)					ATTCTGGTCTCCTACATGCAC	0.537000													4	16					0	0	0.000602	0	0
OR2A14	135941	broad.mit.edu	37	7	143826661	143826661	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:143826661C>T	uc011kua.1	+	1	456	c.456C>T	c.(454-456)TTC>TTT	p.F152F		NM_001001659	NP_001001659	Q96R47	O2A14_HUMAN	olfactory receptor, family 2, subfamily A,	152	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Melanoma(164;0.0783)					TGTTCAGCTTCCTCCTGGCTC	0.532000													53	78					0	0	0.003610	0	0
SSPO	23145	broad.mit.edu	37	7	149523643	149523643	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:149523643G>A	uc010lpk.2	+	104	14554	c.14554G>A	c.(14554-14556)GGC>AGC	p.G4852S	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_Intron|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4852					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTGCCAGCCTGGCTGTGGCTG	0.682000													9	10					0	0	0.004482	0	0
SLC4A2	6522	broad.mit.edu	37	7	150771142	150771143	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr7:150771142_150771143CC>TT	uc003wit.3	+	17	2808_2809	c.2552_2553CC>TT	c.(2551-2553)CCC>CTT	p.P851L	SLC4A2_uc011kve.1_Missense_Mutation_p.P842L|SLC4A2_uc003wiu.3_Missense_Mutation_p.P837L|SLC4A2_uc003wiv.3_Missense_Mutation_p.P45L	NM_003040	NP_003031	P04920	B3A2_HUMAN	solute carrier family 4, anion exchanger, member	851	Membrane (anion exchange).|Extracellular (Potential).				bicarbonate transport	integral to membrane|membrane fraction	inorganic anion exchanger activity				0			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		CAGGAGCACCCCCTGCATGGCT	0.639000													38	38					0	0	0.004672	0	0
MYOM2	9172	broad.mit.edu	37	8	2044252	2044253	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:2044252_2044253CC>TT	uc003wpx.3	+	18	2429_2430	c.2291_2292CC>TT	c.(2290-2292)CCC>CTT	p.P764L	MYOM2_uc011kwi.1_Missense_Mutation_p.P189L	NM_003970	NP_003961	P54296	MYOM2_HUMAN	myomesin 2	764	Fibronectin type-III 4.				muscle contraction	myosin filament	structural constituent of muscle			ovary(4)|central_nervous_system(1)|skin(1)	6		Ovarian(12;0.0572)|Colorectal(14;0.0844)|Hepatocellular(245;0.217)		BRCA - Breast invasive adenocarcinoma(11;1.85e-05)|Colorectal(4;0.0101)|READ - Rectum adenocarcinoma(4;0.148)|COAD - Colon adenocarcinoma(4;0.179)		AATTCCTCACCCAGCAAACCGA	0.470000													9	32					0	0	0.004672	0	0
DEFA4	1669	broad.mit.edu	37	8	6794277	6794277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:6794277C>T	uc003wqu.1	-	2	196	c.145G>A	c.(145-147)GAT>AAT	p.D49N		NM_001925	NP_001916	P12838	DEF4_HUMAN	defensin, alpha 4 preproprotein	49					defense response to bacterium|defense response to fungus|killing of cells of other organism	extracellular space				large_intestine(1)	1				COAD - Colon adenocarcinoma(149;0.0572)|READ - Rectum adenocarcinoma(644;0.121)		GAGCTTTTATCCCATGCAAAG	0.413000													18	57					0	0	0.001523	0	0
RP1L1	94137	broad.mit.edu	37	8	10467799	10467799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:10467799G>A	uc003wtc.2	-	4	4038	c.3809C>T	c.(3808-3810)GCC>GTC	p.A1270V		NM_178857	NP_849188	Q8IWN7	RP1L1_HUMAN	retinitis pigmentosa 1-like 1	1270					intracellular signal transduction					ovary(4)|breast(3)|central_nervous_system(1)	8				COAD - Colon adenocarcinoma(149;0.0811)		CTCATTGGTGGCACAAGCGCA	0.517000													80	54					0	0	0.003610	0	0
ADAM28	10863	broad.mit.edu	37	8	24201063	24201063	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:24201063C>T	uc003xdy.2	+	18	2039	c.1956C>T	c.(1954-1956)ATC>ATT	p.I652I	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Silent_p.I339I	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	652	EGF-like.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		AAGGATGGATCCCTCCCGACT	0.488000													9	5					0	0	0.000978	0	0
CHRNA2	1135	broad.mit.edu	37	8	27321465	27321465	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:27321465G>A	uc010lur.2	-	6	1104	c.495C>T	c.(493-495)CTC>CTT	p.L165L	CHRNA2_uc011lal.1_Silent_p.L150L|CHRNA2_uc010lus.2_Intron	NM_000742	NP_000733	Q15822	ACHA2_HUMAN	cholinergic receptor, nicotinic, alpha	165	Extracellular.					cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			ovary(1)	1		Ovarian(32;2.61e-05)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0208)|Epithelial(17;2.77e-10)|Colorectal(74;0.136)	Atracurium(DB00732)|Biperiden(DB00810)|Carbachol(DB00411)|Cisatracurium Besylate(DB00565)|Decamethonium(DB01245)|Dextromethorphan(DB00514)|Doxacurium(DB01334)|Doxacurium chloride(DB01135)|Gallamine Triethiodide(DB00483)|Levallorphan(DB00504)|Mecamylamine(DB00657)|Metocurine(DB01336)|Metocurine Iodide(DB00416)|Mivacurium(DB01226)|Nicotine(DB00184)|Pancuronium(DB01337)|Pipecuronium(DB01338)|Rocuronium(DB00728)|Tubocurarine(DB01199)	CCGTGGAGAAGAGGTGGGCCT	0.612000													15	14					0	0	0.004007	0	0
TEX15	56154	broad.mit.edu	37	8	30699564	30699564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:30699564C>T	uc003xil.2	-	1	6970	c.6970G>A	c.(6970-6972)GAA>AAA	p.E2324K		NM_031271	NP_112561	Q9BXT5	TEX15_HUMAN	testis expressed 15	2324										ovary(3)|upper_aerodigestive_tract(2)|skin(2)	7				KIRC - Kidney renal clear cell carcinoma(542;0.0918)|Kidney(114;0.111)		TGCTGTTGTTCCTGAGAGTCT	0.343000													10	17					0	0	0.006214	0	0
ADAM2	2515	broad.mit.edu	37	8	39645760	39645760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:39645760G>A	uc003xnj.2	-	9	728	c.653C>T	c.(652-654)TCA>TTA	p.S218L	ADAM2_uc003xnk.2_Missense_Mutation_p.S199L|ADAM2_uc011lck.1_Missense_Mutation_p.S218L|ADAM2_uc003xnl.2_Intron	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	218	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		AATATTAAATGAAACAAAAAT	0.239000													13	14					0	0	0.003163	0	0
MYST3	7994	broad.mit.edu	37	8	41834820	41834820	+	Nonsense_Mutation	SNP	G	A	A	rs144857451		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:41834820G>A	uc010lxb.2	-	8	1613	c.1069C>T	c.(1069-1071)CGA>TGA	p.R357*	MYST3_uc010lxc.2_Nonsense_Mutation_p.R357*|MYST3_uc003xon.3_Nonsense_Mutation_p.R357*|MYST3_uc010lxd.2_Nonsense_Mutation_p.R357*	NM_001099412	NP_001092882	Q92794	MYST3_HUMAN	MYST histone acetyltransferase (monocytic	357	Interaction with RUNX1-1.				histone H3 acetylation|myeloid cell differentiation|negative regulation of transcription, DNA-dependent|nucleosome assembly|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	MOZ/MORF histone acetyltransferase complex|nucleosome	DNA binding|histone acetyltransferase activity|transcription coactivator activity|transcription factor binding|zinc ion binding	p.R357*(1)		ovary(4)|pancreas(1)|central_nervous_system(1)|skin(1)	7	all_epithelial(6;1.12e-27)|all_lung(13;3.94e-12)|Lung NSC(13;6.54e-11)|Ovarian(28;0.00744)|Prostate(17;0.0119)|Colorectal(14;0.0221)|Lung SC(25;0.211)	all_lung(54;0.000294)|Lung NSC(58;0.00105)|Hepatocellular(245;0.0524)|Esophageal squamous(32;0.0954)|Renal(179;0.0983)	Epithelial(1;2.82e-19)|all cancers(1;1.15e-16)|BRCA - Breast invasive adenocarcinoma(8;9.17e-11)|OV - Ovarian serous cystadenocarcinoma(14;9.4e-05)|Colorectal(10;0.000728)|Lung(22;0.00153)|LUSC - Lung squamous cell carcinoma(45;0.00741)|COAD - Colon adenocarcinoma(11;0.0171)			GGGCCAGTTCGAACTTTGCTG	0.378000													17	8					0	0	0.007413	0	0
DKK4	27121	broad.mit.edu	37	8	42234552	42234552	+	Silent	SNP	G	A	A	rs148434708		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:42234552G>A	uc003xpb.2	-	1	123	c.12C>T	c.(10-12)GCC>GCT	p.A4A		NM_014420	NP_055235	Q9UBT3	DKK4_HUMAN	dickkopf homolog 4 precursor	4					multicellular organismal development|negative regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	extracellular region				ovary(1)	1	all_cancers(6;1.42e-24)|all_epithelial(6;1.02e-25)|all_lung(13;2.58e-12)|Lung NSC(13;4.24e-11)|Ovarian(28;0.00769)|Prostate(17;0.0119)|Colorectal(14;0.1)|Lung SC(25;0.211)	all_lung(54;0.000434)|Lung NSC(58;0.00161)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	BRCA - Breast invasive adenocarcinoma(8;3.48e-10)|OV - Ovarian serous cystadenocarcinoma(14;0.00523)|Lung(22;0.00597)|LUSC - Lung squamous cell carcinoma(45;0.024)			CCAGCAGGACGGCCGCCACCA	0.642000													8	6					0	0	0.004482	0	0
RP1	6101	broad.mit.edu	37	8	55537447	55537447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:55537447G>A	uc003xsd.1	+	4	1153	c.1005G>A	c.(1003-1005)ATG>ATA	p.M335I	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	335					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			CAGTTGAGATGAAAGTTCGAT	0.313000													18	17					0	0	0.004990	0	0
XKR4	114786	broad.mit.edu	37	8	56436121	56436121	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:56436121G>A	uc003xsf.2	+	3	1320	c.1288G>A	c.(1288-1290)GAG>AAG	p.E430K		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	430	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			CAAATGGGAAGAGATTGTGTT	0.443000													43	111					0	0	0.002522	0	0
XKR4	114786	broad.mit.edu	37	8	56436225	56436225	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:56436225C>T	uc003xsf.2	+	3	1424	c.1392C>T	c.(1390-1392)ATC>ATT	p.I464I		NM_052898	NP_443130	Q5GH76	XKR4_HUMAN	XK, Kell blood group complex subunit-related	464	Helical; (Potential).					integral to membrane				pancreas(2)	2			Epithelial(17;0.000117)|all cancers(17;0.000836)			ATTTTGTGATCCTTTTGGAAA	0.473000													22	53					0	0	0.001523	0	0
GDAP1	54332	broad.mit.edu	37	8	75262797	75262797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:75262797C>T	uc003yah.2	+	1	180	c.101C>T	c.(100-102)TCC>TTC	p.S34F	GDAP1_uc011lfj.1_5'UTR|GDAP1_uc003yai.2_Intron	NM_018972	NP_061845	Q8TB36	GDAP1_HUMAN	ganglioside-induced differentiation-associated	34	GST N-terminal.					cytoplasm					0	Breast(64;0.00769)	Myeloproliferative disorder(644;0.0122)	BRCA - Breast invasive adenocarcinoma(89;0.0499)|Epithelial(68;0.104)|all cancers(69;0.234)			TGGACGCATTCGTTCAGCTCT	0.622000													10	37					0	0	0.004007	0	0
ZFHX4	79776	broad.mit.edu	37	8	77767503	77767503	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:77767503G>A	uc003yav.2	+	10	8598	c.8211G>A	c.(8209-8211)GAG>GAA	p.E2737E	ZFHX4_uc003yau.1_Silent_p.E2782E|ZFHX4_uc003yaw.1_Silent_p.E2737E	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2737						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			AGGATGTAGAGAATTTAAATG	0.428000										HNSCC(33;0.089)			10	14					0	0	0.000673	0	0
RGS22	26166	broad.mit.edu	37	8	101092463	101092463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:101092463G>A	uc003yjb.1	-	4	433	c.238C>T	c.(238-240)CCC>TCC	p.P80S	RGS22_uc003yja.1_5'UTR|RGS22_uc003yjc.1_Missense_Mutation_p.P80S|RGS22_uc010mbo.1_RNA	NM_015668	NP_056483	Q8NE09	RGS22_HUMAN	regulator of G-protein signaling 22	80					negative regulation of signal transduction	cytoplasm|plasma membrane	GTPase activator activity|signal transducer activity			ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7			Epithelial(11;6.71e-08)|all cancers(13;4.19e-06)|OV - Ovarian serous cystadenocarcinoma(57;0.000469)|STAD - Stomach adenocarcinoma(118;0.169)			TCATAAATGGGATTTCGAGGT	0.338000													52	27					0	0	0.003610	0	0
CSMD3	114788	broad.mit.edu	37	8	113697808	113697808	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:113697808G>A	uc003ynu.2	-	15	2468	c.2309C>T	c.(2308-2310)TCC>TTC	p.S770F	CSMD3_uc003yns.2_Missense_Mutation_p.S42F|CSMD3_uc003ynt.2_Missense_Mutation_p.S730F|CSMD3_uc011lhx.1_Missense_Mutation_p.S666F	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	770	Extracellular (Potential).|CUB 4.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ATCAAACTGGGATTCCAGGTC	0.428000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			9	22					0	0	0.000673	0	0
SLC30A8	169026	broad.mit.edu	37	8	118170045	118170045	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:118170045G>A	uc003yoh.2	+	4	764	c.534G>A	c.(532-534)ATG>ATA	p.M178I	SLC30A8_uc010mcz.2_Missense_Mutation_p.M129I|SLC30A8_uc011lia.1_Missense_Mutation_p.M129I|SLC30A8_uc003yog.2_Missense_Mutation_p.M129I	NM_173851	NP_776250	Q8IWU4	ZNT8_HUMAN	solute carrier family 30 member 8	178	Helical; (Potential).				insulin secretion|positive regulation of insulin secretion|regulation of sequestering of zinc ion|regulation of vesicle-mediated transport|response to glucose stimulus|sequestering of zinc ion	integral to membrane|plasma membrane|secretory granule membrane|transport vesicle membrane	protein homodimerization activity|zinc ion transmembrane transporter activity			ovary(2)|skin(2)	4	all_cancers(13;2.11e-22)|Lung NSC(37;6.08e-05)|Ovarian(258;0.0173)		STAD - Stomach adenocarcinoma(47;0.203)			CGACTGTGATGATCATCGTTT	0.547000													81	129					0	0	0.003610	0	0
FER1L6	654463	broad.mit.edu	37	8	124989743	124989743	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:124989743G>A	uc003yqw.2	+	10	1163	c.957G>A	c.(955-957)CGG>CGA	p.R319R		NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	319	C2 2.|Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CCTTGTGTCGGAGGGTGAAAA	0.502000													4	9					0	0	0.000248	0	0
FER1L6	654463	broad.mit.edu	37	8	125047586	125047586	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:125047586C>T	uc003yqw.2	+	19	2561	c.2355C>T	c.(2353-2355)TCC>TCT	p.S785S	uc003yqx.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	785	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GGCTGGGCTCCATCAAGCATG	0.522000													7	9					0	0	0.006214	0	0
FER1L6	654463	broad.mit.edu	37	8	125076600	125076600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:125076600C>T	uc003yqw.2	+	26	3547	c.3341C>T	c.(3340-3342)TCG>TTG	p.S1114L	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1114	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			ATTTCAGATTCGCTAACAGCC	0.527000													27	26					0	0	0.006320	0	0
FER1L6	654463	broad.mit.edu	37	8	125080030	125080030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:125080030G>A	uc003yqw.2	+	28	3907	c.3701G>A	c.(3700-3702)GGA>GAA	p.G1234E	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1234	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			AATCCCAAGGGAAAAAAAGGC	0.393000													3	4					0	0	0.000602	0	0
ZNF572	137209	broad.mit.edu	37	8	125990020	125990020	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:125990020C>T	uc003yrr.2	+	3	1665	c.1510C>T	c.(1510-1512)CCT>TCT	p.P504S		NM_152412	NP_689625	Q7Z3I7	ZN572_HUMAN	zinc finger protein 572	504					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2	Ovarian(258;0.0028)|all_neural(195;0.00294)|Hepatocellular(40;0.108)		STAD - Stomach adenocarcinoma(47;0.000918)|COAD - Colon adenocarcinoma(160;0.205)			TGGGGATTTTCCTCATGAATG	0.463000										HNSCC(60;0.17)			21	43					0	0	0.002299	0	0
SPATC1	375686	broad.mit.edu	37	8	145096185	145096185	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr8:145096185G>A	uc011lkw.1	+	4	1461	c.1359G>A	c.(1357-1359)CTG>CTA	p.L453L	SPATC1_uc011lkx.1_Intron	NM_198572	NP_940974	Q76KD6	SPERI_HUMAN	spermatogenesis and centriole associated 1	453										ovary(1)|central_nervous_system(1)	2	all_cancers(97;8.2e-11)|all_epithelial(106;1.1e-09)|Lung NSC(106;5.89e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;6.79e-41)|Epithelial(56;1.02e-39)|all cancers(56;3.67e-35)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.105)			CCTTCCAGCTGGACCGCAGGA	0.617000													13	7					0	0	0.001368	0	0
RPS6	6194	broad.mit.edu	37	9	19378419	19378419	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:19378419G>A	uc003znv.1	-	4	485	c.443C>T	c.(442-444)TCT>TTT	p.S148F	RPS6_uc003znu.1_Missense_Mutation_p.S117F|RPS6_uc003znw.1_Missense_Mutation_p.S117F	NM_001010	NP_001001	P62753	RS6_HUMAN	ribosomal protein S6	148					endocrine pancreas development|glucose homeostasis|insulin receptor signaling pathway|positive regulation of apoptosis|rRNA processing|TOR signaling cascade|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit|nucleolus	protein binding			ovary(1)	1		Colorectal(97;3.46e-05)|Myeloproliferative disorder(762;0.0255)		Lung(42;0.161)|LUSC - Lung squamous cell carcinoma(42;0.234)		ATCTTCTTTAGAGAGATTGAA	0.428000													39	71					0	0	0.002222	0	0
IFNW1	3467	broad.mit.edu	37	9	21141194	21141195	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:21141194_21141195CC>TT	uc003zol.1	-	1	950_951	c.375_376GG>AA	c.(373-378)CAGGTA>CAAATA	p.V126I		NM_002177	NP_002168	P05000	IFNW1_HUMAN	interferon, omega 1 precursor	126					cell cycle arrest|defense response|response to virus	extracellular space	cytokine activity|cytokine receptor binding				0				GBM - Glioblastoma multiforme(5;2.35e-185)|Lung(24;2.24e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		TCTCCCACTACCTGCAGCAAGC	0.535000													6	12					0	0	0.004672	0	0
IFNA16	3449	broad.mit.edu	37	9	21217128	21217128	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:21217128G>A	uc003zor.1	-	1	183	c.177C>T	c.(175-177)TTC>TTT	p.F59F	IFNA14_uc003zoo.1_Intron	NM_002173	NP_002164	P05015	IFN16_HUMAN	interferon, alpha 16 precursor	59					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|interferon-alpha/beta receptor binding			skin(1)	1				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.116)		GGGGGAATCCGAAATCATATC	0.502000													29	37					0	0	0.003271	0	0
TAF1L	138474	broad.mit.edu	37	9	32630161	32630161	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:32630161C>T	uc003zrg.1	-	1	5507	c.5417G>A	c.(5416-5418)AGA>AAA	p.R1806K		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1806					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TTGTTTGGGTCTTATTCCACC	0.493000													15	20					0	0	0.004990	0	0
TAF1L	138474	broad.mit.edu	37	9	32631374	32631374	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:32631374C>T	uc003zrg.1	-	1	4294	c.4204G>A	c.(4204-4206)GTG>ATG	p.V1402M	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1402					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GACAGCGTCACCATAGGGTCT	0.463000													59	96					0	0	0.003610	0	0
TAF1L	138474	broad.mit.edu	37	9	32633672	32633672	+	Missense_Mutation	SNP	G	A	A	rs144278499		TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:32633672G>A	uc003zrg.1	-	1	1996	c.1906C>T	c.(1906-1908)CGC>TGC	p.R636C	uc003zrh.1_RNA	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	636					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		AGAGGTGGGCGATGGAACTGC	0.478000													25	44					0	0	0.003330	0	0
C9orf131	138724	broad.mit.edu	37	9	35044551	35044551	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:35044551G>A	uc003zvw.2	+	2	1954	c.1925G>A	c.(1924-1926)GGT>GAT	p.G642D	C9orf131_uc003zvu.2_Missense_Mutation_p.G594D|C9orf131_uc003zvv.2_Missense_Mutation_p.G569D|C9orf131_uc003zvx.2_Missense_Mutation_p.G607D	NM_203299	NP_976044	Q5VYM1	CI131_HUMAN	hypothetical protein LOC138724 isoform A	642											0	all_epithelial(49;0.22)		LUSC - Lung squamous cell carcinoma(32;0.00117)|Lung(28;0.00309)			GTGTTCCCAGGTAGGGGCTCC	0.517000													32	38					0	0	0.006230	0	0
PIGO	84720	broad.mit.edu	37	9	35094005	35094005	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:35094005C>G	uc003zwd.2	-	4	1068	c.672G>C	c.(670-672)TGG>TGC	p.W224C	PIGO_uc003zwc.1_Missense_Mutation_p.W224C|PIGO_uc003zwe.2_Missense_Mutation_p.W224C|PIGO_uc003zwf.2_Missense_Mutation_p.W224C|PIGO_uc003zwg.1_5'UTR	NM_032634	NP_116023	Q8TEQ8	PIGO_HUMAN	phosphatidylinositol glycan anchor biosynthesis,	224					C-terminal protein lipidation|preassembly of GPI anchor in ER membrane	endoplasmic reticulum membrane|integral to membrane	transferase activity			large_intestine(1)|ovary(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(32;0.00343)|Lung(28;0.00778)			TCAGCACGTCCCATTCACCAC	0.557000													7	23					0	0	0.003080	0	0
GDA	9615	broad.mit.edu	37	9	74828907	74828907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:74828907G>A	uc004aiq.2	+	5	761	c.578G>A	c.(577-579)AGA>AAA	p.R193K	GDA_uc011lse.1_Missense_Mutation_p.R119K|GDA_uc011lsf.1_Missense_Mutation_p.R119K|GDA_uc004air.2_Missense_Mutation_p.R193K|GDA_uc010mow.1_RNA|GDA_uc004ais.2_Missense_Mutation_p.R151K|GDA_uc004ait.1_Missense_Mutation_p.R119K	NM_004293	NP_004284	Q9Y2T3	GUAD_HUMAN	guanine deaminase	193					nervous system development|purine base metabolic process|purine nucleotide catabolic process	cytosol	guanine deaminase activity|zinc ion binding			ovary(2)|central_nervous_system(2)|skin(1)	5		Myeloproliferative disorder(762;0.0122)		Lung(182;0.0583)		GAAACTGAGAGGTAAAAGGCC	0.433000													13	17					0	0	0.001368	0	0
TRPM6	140803	broad.mit.edu	37	9	77377279	77377279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:77377279C>T	uc004ajl.1	-	26	4546	c.4308G>A	c.(4306-4308)ATG>ATA	p.M1436I	TRPM6_uc004ajk.1_Missense_Mutation_p.M1431I|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajj.1_Missense_Mutation_p.M392I	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	1436	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GAGGGGAGCTCATTGTCATGG	0.473000													21	14					0	0	0.002780	0	0
TRPM6	140803	broad.mit.edu	37	9	77435218	77435218	+	Splice_Site	SNP	A	C	C			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:77435218A>C	uc004ajl.1	-	9	1372	c.1134_splice	c.e9+1	p.C378_splice	TRPM6_uc004ajk.1_Splice_Site_p.C373_splice|TRPM6_uc010mpb.1_Splice_Site|TRPM6_uc010mpc.1_Splice_Site_p.C378_splice|TRPM6_uc010mpd.1_Splice_Site_p.C378_splice|TRPM6_uc010mpe.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,						response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						CGTCATACTCACACAATCCCT	0.313000													16	13					0	0	0.007413	0	0
TRPM6	140803	broad.mit.edu	37	9	77454999	77454999	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:77454999C>G	uc004ajl.1	-	5	723	c.485G>C	c.(484-486)GGT>GCT	p.G162A	TRPM6_uc004ajk.1_Missense_Mutation_p.G157A|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Missense_Mutation_p.G162A|TRPM6_uc010mpd.1_Missense_Mutation_p.G162A|TRPM6_uc010mpe.1_Missense_Mutation_p.G162A|TRPM6_uc004ajn.1_Missense_Mutation_p.G162A	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	162	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						TTTAACCAAACCTTGGCTGAA	0.358000													22	50					0	0	0.002780	0	0
C9orf40	55071	broad.mit.edu	37	9	77563005	77563005	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:77563005G>A	uc004ajo.3	-	2	819	c.544C>T	c.(544-546)CAG>TAG	p.Q182*		NM_017998	NP_060468	Q8IXQ3	CI040_HUMAN	hypothetical protein LOC55071	182											0						TTCCTGCCCTGAAGTGTTGCT	0.468000													45	49					0	0	0.003610	0	0
RPSAP9	653162	broad.mit.edu	37	9	79014081	79014081	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:79014081A>T	uc011lsj.1	+	1	567	c.467A>T	c.(466-468)TAT>TTT	p.Y156F		NR_026890				SubName: Full=Laminin receptor-like protein LAMRL5;												0						CCTATGCGCTATGTGGACATT	0.517000													20	22					0	0	0.001216	0	0
FLJ46321	389763	broad.mit.edu	37	9	84608932	84608932	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:84608932G>A	uc004amn.2	+	4	3594	c.3547G>A	c.(3547-3549)GAA>AAA	p.E1183K		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1183						integral to membrane					0						CAATGAAACTGAAATTTTCCC	0.403000													15	16					0	0	0.002450	0	0
PTCH1	5727	broad.mit.edu	37	9	98209359	98209359	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:98209359G>A	uc004avk.3	-	23	4367	c.4179C>T	c.(4177-4179)CCC>CCT	p.P1393P	PTCH1_uc010mrn.2_Silent_p.P185P|PTCH1_uc010mro.2_Silent_p.P1242P|PTCH1_uc010mrp.2_Silent_p.P1242P|PTCH1_uc010mrq.2_Silent_p.P1242P|PTCH1_uc004avl.3_Silent_p.P1242P|PTCH1_uc010mrr.2_Silent_p.P1327P|PTCH1_uc004avm.3_Silent_p.P1392P	NM_000264	NP_000255	Q13635	PTC1_HUMAN	patched isoform L	1393	Cytoplasmic (Potential).				embryonic limb morphogenesis|negative regulation of multicellular organism growth|protein processing|regulation of smoothened signaling pathway|smoothened signaling pathway	integral to plasma membrane	hedgehog receptor activity			skin(242)|central_nervous_system(72)|bone(33)|upper_aerodigestive_tract(11)|lung(6)|large_intestine(4)|breast(4)|oesophagus(3)|ovary(3)|vulva(1)	379		Medulloblastoma(1;7.87e-06)|all_neural(1;0.000555)|Acute lymphoblastic leukemia(62;0.136)				GTCCCCCTCGGGGGTTCCGCC	0.682000									Basal_Cell_Nevus_syndrome				43	40					0	0	0.003214	0	0
COL15A1	1306	broad.mit.edu	37	9	101759282	101759282	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:101759282G>A	uc004azb.1	+	6	1077	c.871G>A	c.(871-873)GAA>AAA	p.E291K		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	291	Nonhelical region 1 (NC1).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				TGAAGACATGGAACTTTCTGG	0.493000													41	81					0	0	0.002522	0	0
COL15A1	1306	broad.mit.edu	37	9	101797334	101797334	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:101797334G>A	uc004azb.1	+	18	2324	c.2118G>A	c.(2116-2118)GGG>GGA	p.G706G		NM_001855	NP_001846	P39059	COFA1_HUMAN	alpha 1 type XV collagen precursor	706	Triple-helical region 2 (COL2).				angiogenesis|cell differentiation|signal transduction	collagen type XV|extracellular space|integral to membrane	binding			ovary(6)	6		Acute lymphoblastic leukemia(62;0.0562)				GACCCCCGGGGAAAAAGGGAC	0.617000													8	13					0	0	0.000673	0	0
ACTL7B	10880	broad.mit.edu	37	9	111617666	111617666	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:111617666G>A	uc004bdi.2	-	1	610	c.545C>T	c.(544-546)TCG>TTG	p.S182L		NM_006686	NP_006677	Q9Y614	ACL7B_HUMAN	actin-like 7B	182						actin cytoskeleton|cytoplasm	structural constituent of cytoskeleton			pancreas(1)	1						GGACAGCAACGACTGGGACGT	0.647000													16	25					0	0	0.006122	0	0
SVEP1	79987	broad.mit.edu	37	9	113170146	113170146	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:113170146G>A	uc010mtz.2	-	38	8071	c.7734C>T	c.(7732-7734)ATC>ATT	p.I2578I	SVEP1_uc010mty.2_Silent_p.I504I	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2578	Sushi 20.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AACTGTAGATGATTATGGCAC	0.473000													20	23					0	0	0.001882	0	0
KIAA0368	23392	broad.mit.edu	37	9	114176929	114176929	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:114176929G>A	uc004bfe.1	-	20	2301	c.2301C>T	c.(2299-2301)ATC>ATT	p.I767I	KIAA0368_uc010muc.1_Silent_p.I589I	NM_001080398	NP_001073867			KIAA0368 protein												0						AGTACAGAACGATCTACAAAC	0.502000													17	9					0	0	0.007413	0	0
AMBP	259	broad.mit.edu	37	9	116835237	116835237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:116835237G>A	uc004bie.3	-	5	787	c.524C>T	c.(523-525)CCT>CTT	p.P175L	AMBP_uc011lxk.1_Missense_Mutation_p.P116L|AMBP_uc010mvc.1_RNA	NM_001633	NP_001624	P02760	AMBP_HUMAN	alpha-1-microglobulin/bikunin preproprotein	175					cell adhesion|female pregnancy|heme catabolic process|interspecies interaction between organisms|negative regulation of immune response|negative regulation of JNK cascade|protein-chromophore linkage	extracellular region|plasma membrane	calcium channel inhibitor activity|calcium oxalate binding|heme binding|IgA binding|protein homodimerization activity|serine-type endopeptidase inhibitor activity|transporter activity			skin(1)	1					Human Serum Albumin(DB00062)|Serum albumin iodonated(DB00064)	GGAGTCCTCAGGGATGCCCAC	0.617000													16	11					0	0	0.001216	0	0
PAPPA	5069	broad.mit.edu	37	9	118950332	118950332	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:118950332G>A	uc004bjn.2	+	2	1696	c.1315G>A	c.(1315-1317)GAT>AAT	p.D439N	PAPPA_uc011lxp.1_Missense_Mutation_p.D232N|PAPPA_uc011lxq.1_Missense_Mutation_p.D232N	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	439	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CGACGGCGGGGATTGCCGCCA	0.597000													9	26					0	0	0.000673	0	0
PAPPA	5069	broad.mit.edu	37	9	119065225	119065225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:119065225C>T	uc004bjn.2	+	10	3524	c.3143C>T	c.(3142-3144)TCC>TTC	p.S1048F	PAPPA_uc011lxp.1_Missense_Mutation_p.S743F|PAPPA_uc011lxq.1_Missense_Mutation_p.S423F	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	1048					cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						CCAGCAGCATCCCAGGTAAGA	0.532000													8	4					0	0	0.004482	0	0
OR1Q1	158131	broad.mit.edu	37	9	125377205	125377205	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:125377205C>T	uc011lyy.1	+	1	189	c.189C>T	c.(187-189)CTC>CTT	p.L63L		NM_012364	NP_036496	Q15612	OR1Q1_HUMAN	olfactory receptor, family 1, subfamily Q,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						ACATCTTCCTCAGTAACTTGG	0.473000													32	37					0	0	0.004289	0	0
DENND1A	57706	broad.mit.edu	37	9	126214610	126214610	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:126214610A>T	uc004bnz.1	-	17	1477	c.1244T>A	c.(1243-1245)ATT>AAT	p.I415N	DENND1A_uc011lzl.1_Missense_Mutation_p.I190N|DENND1A_uc004bny.1_Missense_Mutation_p.I154N|DENND1A_uc011lzm.1_Missense_Mutation_p.I383N|DENND1A_uc004boa.1_Missense_Mutation_p.I415N|DENND1A_uc004bob.1_Missense_Mutation_p.I385N|DENND1A_uc004boc.2_Missense_Mutation_p.I383N	NM_020946	NP_065997	Q8TEH3	DEN1A_HUMAN	DENN/MADD domain containing 1A isoform 1	415						cell junction|clathrin coated vesicle membrane|presynaptic membrane	guanyl-nucleotide exchange factor activity			ovary(2)	2						AGTATTCAGAATTGCTCCACT	0.413000													40	58					0	0	0.002522	0	0
LRRC8A	56262	broad.mit.edu	37	9	131669672	131669673	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:131669672_131669673CC>TT	uc004bwl.3	+	3	483_484	c.229_230CC>TT	c.(229-231)CCG>TTG	p.P77L	LRRC8A_uc010myp.2_Missense_Mutation_p.P77L|LRRC8A_uc010myq.2_Missense_Mutation_p.P77L	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	77					pre-B cell differentiation	integral to membrane					0						AGCCCCTGGCCCGGAGCCCACC	0.614000													17	30					0	0	0.004672	0	0
TTF1	7270	broad.mit.edu	37	9	135273568	135273568	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:135273568G>A	uc004cbl.2	-	4	1789	c.1737C>T	c.(1735-1737)ATC>ATT	p.I579I	TTF1_uc011mcp.1_RNA|TTF1_uc004cbm.2_Silent_p.I64I	NM_007344	NP_031370	Q15361	TTF1_HUMAN	transcription termination factor, RNA polymerase	579					negative regulation of DNA replication|regulation of transcription, DNA-dependent|termination of RNA polymerase I transcription	nucleolus|nucleoplasm	DNA binding			ovary(2)|upper_aerodigestive_tract(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;4.25e-06)|Epithelial(140;9.09e-05)		TTAAGTTGGTGATCACAGATT	0.398000													22	33					0	0	0.004656	0	0
DBH	1621	broad.mit.edu	37	9	136516773	136516773	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:136516773G>A	uc004cel.2	+	7	1218	c.1209G>A	c.(1207-1209)GGG>GGA	p.G403G		NM_000787	NP_000778	P09172	DOPO_HUMAN	dopamine beta hydroxylase precursor	403	Intragranular (Potential).				hormone biosynthetic process	chromaffin granule lumen|chromaffin granule membrane|extracellular region|integral to membrane|membrane fraction|soluble fraction|transport vesicle membrane	dopamine beta-monooxygenase activity|L-ascorbic acid binding			ovary(2)|central_nervous_system(2)	4				OV - Ovarian serous cystadenocarcinoma(145;2.33e-07)|Epithelial(140;1.5e-06)|all cancers(34;1.66e-05)	Dopamine(DB00988)|Vitamin C(DB00126)	CTCCCTCCGGGATCCACATCT	0.677000													15	36					0	0	0.004007	0	0
COL5A1	1289	broad.mit.edu	37	9	137710734	137710734	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:137710734C>T	uc004cfe.2	+	56	4761	c.4379C>T	c.(4378-4380)CCC>CTC	p.P1460L		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	1460	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		CCGGACGGTCCCCCCGGCCCC	0.632000													7	33					0	0	0.003080	0	0
KCNT1	57582	broad.mit.edu	37	9	138675892	138675892	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:138675892A>G	uc011mdq.1	+	25	2938	c.2864A>G	c.(2863-2865)AAC>AGC	p.N955S	KCNT1_uc011mdr.1_Missense_Mutation_p.N782S|KCNT1_uc010nbf.2_Missense_Mutation_p.N910S|KCNT1_uc004cgo.1_Missense_Mutation_p.N704S	NM_020822	NP_065873	Q5JUK3	KCNT1_HUMAN	potassium channel, subfamily T, member 1	955						membrane	binding|calcium-activated potassium channel activity			large_intestine(2)|ovary(1)|pancreas(1)	4		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;2.11e-07)|Epithelial(140;1.57e-06)|all cancers(34;9.22e-05)		AATGGCTCCAACCTGGCCTTC	0.662000													24	28					0	0	0.002780	0	0
PMPCA	23203	broad.mit.edu	37	9	139317583	139317583	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:139317583C>T	uc004chl.2	+	13	1450	c.1445C>T	c.(1444-1446)TCT>TTT	p.S482F	PMPCA_uc010nbl.2_Missense_Mutation_p.S382F|PMPCA_uc011mdz.1_Missense_Mutation_p.S351F|PMPCA_uc004chn.1_3'UTR	NM_015160	NP_055975	Q10713	MPPA_HUMAN	peptidase (mitochondrial processing) alpha	482					proteolysis	mitochondrial inner membrane|mitochondrial matrix	metalloendopeptidase activity|zinc ion binding				0		Myeloproliferative disorder(178;0.0821)		OV - Ovarian serous cystadenocarcinoma(145;9.3e-06)|Epithelial(140;1.15e-05)		AGAGTCGCTTCTAAGATGCTC	0.632000													12	18					0	0	0.001855	0	0
NOTCH1	4851	broad.mit.edu	37	9	139418180	139418180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:139418180G>A	uc004chz.2	-	3	392	c.392C>T	c.(391-393)CCC>CTC	p.P131L		NM_017617	NP_060087	P46531	NOTC1_HUMAN	notch1 preproprotein	131	Extracellular (Potential).|EGF-like 3.				aortic valve morphogenesis|immune response|negative regulation of BMP signaling pathway|negative regulation of cell-substrate adhesion|negative regulation of myoblast differentiation|negative regulation of osteoblast differentiation|negative regulation of transcription, DNA-dependent|Notch receptor processing	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			haematopoietic_and_lymphoid_tissue(791)|upper_aerodigestive_tract(29)|lung(13)|central_nervous_system(10)|breast(9)|large_intestine(1)|skin(1)|oesophagus(1)|pancreas(1)	856	all_cancers(76;0.223)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;5.34e-06)|Epithelial(140;7.77e-06)		TGACCAGCCGGGCGGGCAGCG	0.692000			T|Mis|O	TRB@	T-ALL					HNSCC(8;0.001)			7	8					0	0	0.004482	0	0
AGPAT2	10555	broad.mit.edu	37	9	139572001	139572001	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:139572001C>A	uc004cii.1	-	2	292	c.190G>T	c.(190-192)GGC>TGC	p.G64C	AGPAT2_uc004cij.1_Missense_Mutation_p.G64C	NM_006412	NP_006403	O15120	PLCB_HUMAN	1-acylglycerol-3-phosphate O-acyltransferase 2	64					phosphatidic acid biosynthetic process|positive regulation of cytokine production|triglyceride biosynthetic process	endoplasmic reticulum membrane|integral to membrane	1-acylglycerol-3-phosphate O-acyltransferase activity				0	all_cancers(76;0.0893)|all_epithelial(76;0.231)	Myeloproliferative disorder(178;0.0511)		OV - Ovarian serous cystadenocarcinoma(145;9.87e-06)|Epithelial(140;0.000123)		ACGAACCAGCCGATGATGCTG	0.667000													10	200					0.000978159	0.00211405	0.000978	1	0
NDOR1	27158	broad.mit.edu	37	9	140109922	140109922	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:140109922C>T	uc004clw.2	+	10	1348	c.1237C>T	c.(1237-1239)CCC>TCC	p.P413S	NDOR1_uc004clx.2_Missense_Mutation_p.P413S|NDOR1_uc011mes.1_Missense_Mutation_p.P406S|NDOR1_uc004cly.2_Missense_Mutation_p.P379S	NM_014434	NP_055249	Q9UHB4	NDOR1_HUMAN	NADPH dependent diflavin oxidoreductase 1	413	FAD-binding FR-type.				cell death	cytosol|intermediate filament cytoskeleton|nucleus|perinuclear region of cytoplasm	flavin adenine dinucleotide binding|FMN binding|iron ion binding|NADP binding|oxidoreductase activity|protein binding				0	all_cancers(76;0.0926)		STAD - Stomach adenocarcinoma(284;0.0698)	OV - Ovarian serous cystadenocarcinoma(145;6.37e-05)|Epithelial(140;0.00057)		CCTCAAGGAGCCCCGCCGGGG	0.687000													29	36					0	0	0.005524	0	0
PNPLA7	375775	broad.mit.edu	37	9	140441761	140441761	+	Silent	SNP	G	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:140441761G>T	uc004cnf.2	-	2	455	c.118C>A	c.(118-120)CGA>AGA	p.R40R	PNPLA7_uc010ncj.1_Silent_p.R65R	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	40					lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		AGATACTCACGAAATTGTCTA	0.592000													48	67					3.81248e-40	8.42938e-40	0.003610	1	0
TUBBP5	643224	broad.mit.edu	37	9	141071110	141071110	+	Silent	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:141071110A>G	uc004com.2	+	4	774	c.513A>G	c.(511-513)CCA>CCG	p.P171P	TUBBP5_uc010ncq.2_3'UTR					RecName: Full=Putative tubulin beta-4q chain;												0						TGCGCTTCCCAGGCCAGCTGA	0.597000													5	43					0	0	0.000602	0	0
SFRS17A	8227	broad.mit.edu	37	X	1712776	1712776	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:1712776C>T	uc004cqa.2	+	2	617	c.421C>T	c.(421-423)CTG>TTG	p.L141L	SFRS17A_uc010ncx.1_Silent_p.L141L|SFRS17A_uc004cqb.2_RNA|ASMT_uc004cqd.2_5'Flank	NM_005088	NP_005079	Q02040	AK17A_HUMAN	DNA segment on chromosome X and Y (unique) 155	141					B cell activation|mRNA processing|regulation of transcription, DNA-dependent|RNA splicing|signal transduction	nuclear speck|spliceosomal complex	nucleotide binding|protein binding|RNA binding				0		all_cancers(21;4.28e-07)|all_epithelial(21;2.07e-08)|all_lung(23;2.81e-05)|Lung NSC(23;0.000693)|Lung SC(21;0.122)				GAACGAGACCCTGCCGGGGGA	0.667000													68	17					0	0	0.003610	0	0
GPR143	4935	broad.mit.edu	37	X	9714170	9714170	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:9714170G>A	uc004cst.1	-	5	632	c.632C>T	c.(631-633)GCC>GTC	p.A211V		NM_000273	NP_000264	P51810	GP143_HUMAN	G protein-coupled receptor 143	191	Extracellular (Potential).				calcium-mediated signaling using intracellular calcium source|eye pigment biosynthetic process|melanosome organization|melanosome transport|phosphatidylinositol-mediated signaling|regulation of calcium-mediated signaling|visual perception	apical plasma membrane|Golgi apparatus|integral to membrane|lysosomal membrane|melanosome membrane|membrane fraction	dopamine binding|L-DOPA receptor activity|protein binding|tyrosine binding			ovary(1)	1		Hepatocellular(5;0.000888)				GTGGGGGATGGCGTGGTCCAG	0.498000													36	5					0	0	0.004289	0	0
SYAP1	94056	broad.mit.edu	37	X	16761838	16761838	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:16761838C>T	uc004cxp.2	+	5	543	c.450C>T	c.(448-450)TTC>TTT	p.F150F	SYAP1_uc004cxo.2_Silent_p.F150F|SYAP1_uc011miv.1_Silent_p.F116F	NM_032796	NP_116185	Q96A49	SYAP1_HUMAN	SYAP1 protein	150										skin(1)	1	Hepatocellular(33;0.0997)					AGAGGAATTTCCTTCGTGACC	0.378000													59	13					0	0	0.003610	0	0
OTC	5009	broad.mit.edu	37	X	38240680	38240680	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:38240680C>T	uc004def.3	+	4	598	c.384C>T	c.(382-384)GCC>GCT	p.A128A		NM_000531	NP_000522	P00480	OTC_HUMAN	ornithine carbamoyltransferase precursor	128					arginine biosynthetic process|urea cycle	mitochondrial matrix|ornithine carbamoyltransferase complex	ornithine carbamoyltransferase activity			ovary(1)|breast(1)	2					L-Citrulline(DB00155)|L-Ornithine(DB00129)	CGGACACGGCCCGGTTTGTAA	0.348000													20	1					0	0	0.007413	0	0
DUSP21	63904	broad.mit.edu	37	X	44703447	44703447	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:44703447C>T	uc004dgd.2	+	1	199	c.69C>T	c.(67-69)TCC>TCT	p.S23S		NM_022076	NP_071359	Q9H596	DUS21_HUMAN	dual specificity phosphatase 21	23	Tyrosine-protein phosphatase.					cytoplasm|nucleus	MAP kinase tyrosine/serine/threonine phosphatase activity|protein tyrosine phosphatase activity			large_intestine(1)|lung(1)	2						ACAGCTTCTCCCAAATAACCA	0.552000													52	12					0	0	0.003610	0	0
ZNF157	7712	broad.mit.edu	37	X	47271915	47271915	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:47271915G>A	uc004dhr.1	+	4	512	c.443G>A	c.(442-444)GGC>GAC	p.G148D		NM_003446	NP_003437	P51786	ZN157_HUMAN	zinc finger protein 157	148					negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0						GAGAAAACAGGCTTTGTTAGA	0.383000													20	5					0	0	0.002299	0	0
CACNA1F	778	broad.mit.edu	37	X	49066207	49066207	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:49066207G>A	uc004dnb.2	-	41	4798	c.4736C>T	c.(4735-4737)ACC>ATC	p.T1579I	CACNA1F_uc010nip.2_Missense_Mutation_p.T1568I	NM_005183	NP_005174	O60840	CAC1F_HUMAN	calcium channel, voltage-dependent, L type,	1579	Cytoplasmic (Potential).				axon guidance|detection of light stimulus involved in visual perception	voltage-gated calcium channel complex	protein binding|voltage-gated calcium channel activity			breast(3)|ovary(1)|kidney(1)|skin(1)	6					Verapamil(DB00661)	TTTGCCCACGGTGACCTCCTC	0.587000													21	2					0	0	0.002299	0	0
AKAP4	8852	broad.mit.edu	37	X	49958743	49958743	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:49958743G>A	uc004dow.1	-	5	745	c.621C>T	c.(619-621)TCC>TCT	p.S207S	AKAP4_uc004dov.1_Intron|AKAP4_uc010njp.1_Silent_p.S29S|AKAP4_uc004dou.1_Silent_p.S198S	NM_003886	NP_003877	Q5JQC9	AKAP4_HUMAN	A-kinase anchor protein 4 isoform 1	207					cell projection organization|single fertilization|sperm motility	cAMP-dependent protein kinase complex|cilium|cytoskeleton|microtubule-based flagellum	protein kinase A binding			kidney(3)|central_nervous_system(2)|ovary(1)|lung(1)|skin(1)	8	Ovarian(276;0.236)					CTCCATCAGGGGAAATGACTG	0.448000													44	9					0	0	0.003610	0	0
MAGEE1	57692	broad.mit.edu	37	X	75650688	75650688	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:75650688C>T	uc004ecm.1	+	1	2572	c.2365C>T	c.(2365-2367)CGT>TGT	p.R789C		NM_020932	NP_065983	Q9HCI5	MAGE1_HUMAN	melanoma antigen family E, 1	789	Interaction with DTNA (By similarity).|MAGE 2.					dendrite|nucleus|perinuclear region of cytoplasm|postsynaptic membrane				breast(3)|ovary(1)|pancreas(1)|skin(1)	6						CCTCCTGAATCGTGCTGCCCG	0.473000													45	10					0	0	0.003610	0	0
CYLC1	1538	broad.mit.edu	37	X	83129186	83129186	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:83129186G>A	uc004eei.1	+	4	1491	c.1470G>A	c.(1468-1470)TTG>TTA	p.L490L	CYLC1_uc004eeh.1_Silent_p.L489L	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	490	6.				cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						AATCTGATTTGGAGTTAAAGA	0.348000													4	1					0	0	0.000248	0	0
SATL1	340562	broad.mit.edu	37	X	84363848	84363848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:84363848C>T	uc011mqx.1	-	1	127	c.127G>A	c.(127-129)GAA>AAA	p.E43K	SATL1_uc004een.2_Missense_Mutation_p.E43K	NM_001163541	NP_001157013	Q86VE3	SATL1_HUMAN	spermidine/spermine N1-acetyl transferase-like 1	98	Gln-rich.						N-acetyltransferase activity			breast(2)	2						TGGTTCATTTCATATAGGCTT	0.448000											OREG0019887	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	9	2					0	0	0.006214	0	0
TRMT2B	79979	broad.mit.edu	37	X	100278593	100278593	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:100278593A>G	uc004egq.2	-	7	921	c.622T>C	c.(622-624)TTC>CTC	p.F208L	TRMT2B_uc004egp.2_RNA|TRMT2B_uc004egr.2_Missense_Mutation_p.F208L|TRMT2B_uc004egs.2_Missense_Mutation_p.F208L|TRMT2B_uc004egt.2_Missense_Mutation_p.F208L|TRMT2B_uc004egu.2_Missense_Mutation_p.F89L|TRMT2B_uc004egv.2_Missense_Mutation_p.F163L	NM_024917	NP_079193	Q96GJ1	TRM2_HUMAN	TRM2 tRNA methyltransferase 2 homolog B	208							tRNA (uracil-5-)-methyltransferase activity			ovary(1)	1						TGTCGAAGGAATACTTCATAG	0.423000													14	1					0	0	0.002450	0	0
KLHL13	90293	broad.mit.edu	37	X	117053615	117053615	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:117053615T>A	uc004eql.2	-	4	501	c.439A>T	c.(439-441)AAA>TAA	p.K147*	KLHL13_uc004eqk.2_Nonsense_Mutation_p.K96*|KLHL13_uc011mtn.1_Intron|KLHL13_uc011mto.1_Nonsense_Mutation_p.K141*|KLHL13_uc011mtp.1_Nonsense_Mutation_p.K149*|KLHL13_uc004eqm.2_Nonsense_Mutation_p.K96*|KLHL13_uc011mtq.1_Nonsense_Mutation_p.K131*	NM_033495	NP_277030	Q9P2N7	KLH13_HUMAN	kelch-like 13	147	BTB.				cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex				kidney(1)|skin(1)	2						TCAATAATTTTCCTTAGACCG	0.353000													54	8					0	0	0.003610	0	0
ENOX2	10495	broad.mit.edu	37	X	129771274	129771274	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:129771274G>A	uc004evw.2	-	12	1745	c.1327C>T	c.(1327-1329)CAC>TAC	p.H443Y	ENOX2_uc004evx.2_Missense_Mutation_p.H414Y|ENOX2_uc004evy.2_Missense_Mutation_p.H414Y|ENOX2_uc004evv.2_Missense_Mutation_p.H268Y	NM_182314	NP_872114	Q16206	ENOX2_HUMAN	ecto-NOX disulfide-thiol exchanger 2 isoform b	443	Potential.				cell growth|electron transport chain|regulation of growth|transport|ultradian rhythm	cytosol|external side of plasma membrane|extracellular space	nucleic acid binding|nucleotide binding|protein disulfide oxidoreductase activity			ovary(1)	1						TCTTCTCTGTGGACTTTGCCT	0.478000													95	15					0	0	0.003610	0	0
OR13H1	347468	broad.mit.edu	37	X	130678393	130678393	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:130678393G>A	uc011muw.1	+	1	346	c.346G>A	c.(346-348)GCT>ACT	p.A116T	IGSF1_uc004ewf.2_Intron	NM_001004486	NP_001004486	Q8NG92	O13H1_HUMAN	olfactory receptor, family 13, subfamily H,	116	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Acute lymphoblastic leukemia(192;0.000636)					CCTCCTACTGGCTGCCATGGC	0.522000													23	1					0	0	0.002780	0	0
FRMD7	90167	broad.mit.edu	37	X	131212560	131212560	+	Silent	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:131212560G>A	uc004ewn.2	-	12	1663	c.1485C>T	c.(1483-1485)GTC>GTT	p.V495V	FRMD7_uc011muy.1_Silent_p.V480V	NM_194277	NP_919253	Q6ZUT3	FRMD7_HUMAN	FERM domain containing 7	495					regulation of neuron projection development	cytoskeleton|growth cone|neuronal cell body	binding			skin(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CATAAAAAAAGACCTGGGGAG	0.502000													20	4					0	0	0.007413	0	0
MCF2	4168	broad.mit.edu	37	X	138729049	138729049	+	Silent	SNP	C	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:138729049C>T	uc011mwn.1	-	3	300	c.294G>A	c.(292-294)AAG>AAA	p.K98K	MCF2_uc004faw.2_Silent_p.K13K|MCF2_uc011mwo.1_Silent_p.K13K			P10911	MCF2_HUMAN	SubName: Full=MCF.2 cell line derived transforming sequence;	Error:Variant_position_missing_in_P10911_after_alignment					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|membrane|membrane fraction	protein binding|Rho guanyl-nucleotide exchange factor activity			lung(1)|pleura(1)	2	Acute lymphoblastic leukemia(192;0.000127)					AAGCATTGTCCTTTCCCCGGC	0.328000													8	1					0	0	0.003080	0	0
MAGEC1	9947	broad.mit.edu	37	X	140995048	140995048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:140995048G>A	uc004fbt.2	+	4	2144	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	MAGEC1_uc010nsl.1_Intron	NM_005462	NP_005453	O60732	MAGC1_HUMAN	melanoma antigen family C, 1	620							protein binding			ovary(1)|kidney(1)|central_nervous_system(1)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					TCAGGGGGAGGAATTCCAGTC	0.562000										HNSCC(15;0.026)			102	18					0	0	0.003610	0	0
MTCP1	4515	broad.mit.edu	37	X	154294261	154294261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chrX:154294261G>A	uc004fmz.2	-	2	651	c.25C>T	c.(25-27)CCA>TCA	p.P9S	MTCP1NB_uc004fmy.2_Intron	NM_001018025	NP_001018025	P56278	MTCP1_HUMAN	mature T-cell proliferation 1	9					cell proliferation					lung(1)	1	all_cancers(53;3.51e-17)|all_epithelial(53;5.13e-11)|all_lung(58;3.84e-07)|Lung NSC(58;1.2e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGATCGGGTGGAGCCCCCACA	0.572000			T	TRA@	T cell prolymphocytic leukemia								34	8					0	0	0.004878	0	0
ARID1A	8289	broad.mit.edu	37	1	27106022	27106023	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr1:27106022_27106023insT	uc001bmv.1	+	20	6006_6007	c.5633_5634insT	c.(5632-5634)CCTfs	p.P1878fs	ARID1A_uc001bmu.1_Frame_Shift_Ins_p.P1661fs|ARID1A_uc001bmx.1_Frame_Shift_Ins_p.P724fs|ARID1A_uc009vsm.1_Frame_Shift_Ins_p.P206fs|ARID1A_uc009vsn.1_Frame_Shift_Ins_p.P120fs	NM_006015	NP_006006	O14497	ARI1A_HUMAN	AT rich interactive domain 1A isoform a	1878					androgen receptor signaling pathway|chromatin-mediated maintenance of transcription|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|nervous system development|nucleosome mobilization|transcription, DNA-dependent	nBAF complex|npBAF complex|SWI/SNF complex	DNA binding|protein binding			ovary(124)|pancreas(5)|central_nervous_system(3)|endometrium(3)|kidney(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	142		all_cancers(24;6.36e-27)|all_epithelial(13;5.93e-24)|Colorectal(325;3.46e-05)|all_lung(284;4.76e-05)|Lung NSC(340;5.83e-05)|Breast(348;9.7e-05)|Renal(390;0.0007)|Ovarian(437;0.00473)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0381)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|all cancers(4;2.61e-56)|Epithelial(14;7.53e-55)|OV - Ovarian serous cystadenocarcinoma(117;4.5e-30)|Colorectal(126;2.07e-09)|COAD - Colon adenocarcinoma(152;4.29e-07)|BRCA - Breast invasive adenocarcinoma(304;4.13e-05)|STAD - Stomach adenocarcinoma(196;0.000279)|KIRC - Kidney renal clear cell carcinoma(1967;0.000794)|GBM - Glioblastoma multiforme(114;0.0132)|READ - Rectum adenocarcinoma(331;0.0469)|Lung(427;0.167)|LUSC - Lung squamous cell carcinoma(448;0.242)		CCACCAGCCCCTCGGAAGCATG	0.614			Mis|N|F|S|D		clear cell ovarian carcinoma|RCC								72	58	---	---	---	---					
KDM4D	55693	broad.mit.edu	37	11	94730806	94730807	+	Frame_Shift_Ins	INS	-	A	A	rs142280183	by1000genomes	TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr11:94730806_94730807insA	uc001pfe.2	+	3	1102_1103	c.270_271insA	c.(268-273)CATAAAfs	p.H90fs		NM_018039	NP_060509	Q6B0I6	KDM4D_HUMAN	jumonji domain containing 2D	90_91	Poly-Lys.				chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						CTCAATACCATAAAAAAAAGAA	0.455													7	491	---	---	---	---					
BANP	54971	broad.mit.edu	37	16	88052139	88052139	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr16:88052139delG	uc002fkr.2	+	7	958	c.734delG	c.(733-735)CGCfs	p.R245fs	BANP_uc002fkp.2_Frame_Shift_Del_p.R215fs|BANP_uc002fkq.2_Frame_Shift_Del_p.R215fs|BANP_uc010vow.1_Frame_Shift_Del_p.R253fs|BANP_uc002fks.3_Frame_Shift_Del_p.R214fs|BANP_uc002fko.1_Frame_Shift_Del_p.R151fs|BANP_uc010vov.1_Frame_Shift_Del_p.R220fs	NM_079837	NP_524576	Q8N9N5	BANP_HUMAN	BTG3 associated nuclear protein isoform b	246	Interaction with CUX1 and HDAC1 (By similarity).|BEN.				cell cycle|chromatin modification|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0				BRCA - Breast invasive adenocarcinoma(80;0.00551)		ACCAACTGCCGCACGGCCGAG	0.642													6	13	---	---	---	---					
CCNG1	900	broad.mit.edu	37	5	162866446	162866447	+	Frame_Shift_Ins	INS	-	TA	TA			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr5:162866446_162866447insTA	uc003lzb.2	+	3	318_319	c.184_185insTA	c.(184-186)CTAfs	p.L62fs	CCNG1_uc011dek.1_Intron|CCNG1_uc011del.1_Intron|CCNG1_uc003lzc.2_Intron	NM_199246	NP_954854	P51959	CCNG1_HUMAN	cyclin G1	62					cell division|mitosis|regulation of cyclin-dependent protein kinase activity	nucleus				lung(1)|kidney(1)	2	Renal(175;0.000281)	Medulloblastoma(196;0.00853)|all_neural(177;0.0408)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.0597)|OV - Ovarian serous cystadenocarcinoma(192;0.107)|Epithelial(171;0.164)		TCTTCTTAGTCTAACTCAGTTC	0.391													28	59	---	---	---	---					
CFB	629	broad.mit.edu	37	6	31895549	31895549	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr6:31895549delT	uc011dor.1	+	1	284	c.20delT	c.(19-21)CTTfs	p.L7fs	C2_uc003nyc.2_Intron|C2_uc011doo.1_Intron|C2_uc011dop.1_Intron|C2_uc003nye.3_Frame_Shift_Del_p.L7fs|C2_uc003nyf.2_Frame_Shift_Del_p.L7fs|C2_uc010jtk.2_Frame_Shift_Del_p.L7fs|C2_uc011doq.1_5'UTR|C2_uc003nyg.2_Frame_Shift_Del_p.L7fs	NM_001710	NP_001701	P00751	CFAB_HUMAN	complement factor B preproprotein	Error:Variant_position_missing_in_P00751_after_alignment					complement activation, alternative pathway|proteolysis	extracellular region|plasma membrane	complement binding|serine-type endopeptidase activity			skin(1)	1						CTGATGGTTCTTTTTTGCCTG	0.582													7	1229	---	---	---	---					
CIZ1	25792	broad.mit.edu	37	9	130953109	130953111	+	In_Frame_Del	DEL	GCT	-	-			TCGA-EE-A2MM-06A-11D-A196-08	TCGA-EE-A2MM-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	bd16c83d-697e-4a22-8c05-9035bfa179ec	5b700305-fddd-4586-aa4f-5444e15d76ed	g.chr9:130953109_130953111delGCT	uc004btt.2	-	2	189_191	c.26_28delAGC	c.(25-30)CAGCTC>CTC	p.Q9del	CIZ1_uc004btr.2_In_Frame_Del_p.Q9del|CIZ1_uc004bts.2_In_Frame_Del_p.Q9del|CIZ1_uc011maq.1_In_Frame_Del_p.Q9del|CIZ1_uc004btu.2_In_Frame_Del_p.Q9del|CIZ1_uc011mar.1_5'UTR|CIZ1_uc011mas.1_In_Frame_Del_p.Q39del|CIZ1_uc004btw.2_In_Frame_Del_p.Q9del|CIZ1_uc004btv.2_In_Frame_Del_p.Q9del|CIZ1_uc004btx.2_In_Frame_Del_p.Q9del	NM_001131016	NP_001124488	Q9ULV3	CIZ1_HUMAN	CDKN1A interacting zinc finger protein 1 isoform	9	Gln-rich.			Missing (in Ref. 7; AAF23231).		nucleus	nucleic acid binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4						tgttgctggagctgctgctgctg	0.330													2	4	---	---	---	---					
