Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
AGRN	375790	broad.mit.edu	37	1	983023	983023	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:983023C>T	uc001ack.1	+	21	3637	c.3587C>T	c.(3586-3588)CCC>CTC	p.P1196L		NM_198576	NP_940978	O00468	AGRIN_HUMAN	agrin precursor	1196	SEA.				axon guidance|clustering of voltage-gated sodium channels|muscarinic acetylcholine receptor signaling pathway|receptor clustering	basal lamina	laminin binding|structural constituent of cytoskeleton			central_nervous_system(2)|breast(1)	3	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		UCEC - Uterine corpus endometrioid carcinoma (11;0.00462)|Epithelial(90;5.98e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.43e-23)|Colorectal(212;5.97e-05)|COAD - Colon adenocarcinoma(227;0.000201)|Kidney(185;0.0024)|BRCA - Breast invasive adenocarcinoma(365;0.00246)|STAD - Stomach adenocarcinoma(132;0.00645)|KIRC - Kidney renal clear cell carcinoma(229;0.0354)|Lung(427;0.201)		GACCTGGGGCCCGGCAAATCC	0.622													13	53					0	0	0.004990	0	0
ACTRT2	140625	broad.mit.edu	37	1	2939049	2939049	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:2939049C>T	uc001ajz.2	+	1	1004	c.799C>T	c.(799-801)CAG>TAG	p.Q267*		NM_080431	NP_536356	Q8TDY3	ACTT2_HUMAN	actin-related protein M2	267						cytoplasm|cytoskeleton					0	all_cancers(77;0.00205)|all_epithelial(69;0.0011)|Ovarian(185;0.0634)|Lung NSC(156;0.0893)|all_lung(157;0.0909)	all_epithelial(116;2.66e-20)|all_lung(118;1.56e-08)|Lung NSC(185;2.54e-06)|Breast(487;0.00156)|Renal(390;0.00183)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0308)|Lung SC(97;0.0847)|Medulloblastoma(700;0.123)		Epithelial(90;7.19e-38)|OV - Ovarian serous cystadenocarcinoma(86;5.15e-22)|GBM - Glioblastoma multiforme(42;1.1e-12)|Colorectal(212;3.98e-05)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.000329)|BRCA - Breast invasive adenocarcinoma(365;0.000949)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(132;0.00644)|Lung(427;0.125)		GTTCGTGCCCCAGCAGCTGGG	0.632													5	88					0	0	0.000602	0	0
AJAP1	55966	broad.mit.edu	37	1	4772655	4772655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:4772655C>T	uc001alm.1	+	2	1106	c.725C>T	c.(724-726)CCC>CTC	p.P242L	AJAP1_uc001aln.2_Missense_Mutation_p.P242L	NM_001042478	NP_001035943	Q9UKB5	AJAP1_HUMAN	adherens junction associated protein 1	242	Extracellular (Potential).				cell adhesion	adherens junction|apical plasma membrane|basolateral plasma membrane|integral to membrane				lung(1)	1	all_cancers(77;0.071)|Ovarian(185;0.0721)	all_cancers(23;1.77e-36)|all_epithelial(116;1.26e-21)|all_lung(118;3.51e-08)|Lung NSC(185;3.47e-06)|all_neural(13;8.84e-06)|all_hematologic(16;7.61e-05)|Breast(487;0.000507)|Renal(390;0.0007)|Colorectal(325;0.00117)|Hepatocellular(190;0.0071)|Glioma(11;0.0155)|Myeloproliferative disorder(586;0.0258)|Ovarian(437;0.0409)|Lung SC(97;0.133)|Medulloblastoma(700;0.215)		Epithelial(90;3.89e-35)|OV - Ovarian serous cystadenocarcinoma(86;1.97e-19)|GBM - Glioblastoma multiforme(42;3.71e-19)|Colorectal(212;4.57e-06)|COAD - Colon adenocarcinoma(227;0.00019)|Kidney(185;0.000969)|BRCA - Breast invasive adenocarcinoma(365;0.00122)|STAD - Stomach adenocarcinoma(132;0.00578)|KIRC - Kidney renal clear cell carcinoma(229;0.0126)|READ - Rectum adenocarcinoma(331;0.0689)		TCCTTGGATCCCCGGAGAAGG	0.493													3	32					0	0	0.004672	0	0
CHD5	26038	broad.mit.edu	37	1	6194187	6194187	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:6194187C>T	uc001amb.1	-	20	3244	c.3144_splice	c.e20+1	p.Q1048_splice	CHD5_uc001alz.1_5'Flank|CHD5_uc001ama.1_Splice_Site|CHD5_uc001amc.1_Splice_Site|CHD5_uc009vlx.1_Splice_Site	NM_015557	NP_056372	Q8TDI0	CHD5_HUMAN	chromodomain helicase DNA binding protein 5						chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|DNA binding|zinc ion binding			central_nervous_system(3)|breast(3)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)|skin(1)|pancreas(1)	12	Ovarian(185;0.0634)	all_cancers(23;5.36e-32)|all_epithelial(116;2.32e-17)|all_neural(13;3.68e-06)|all_lung(118;3.94e-06)|all_hematologic(16;2.39e-05)|Lung NSC(185;5.33e-05)|Acute lymphoblastic leukemia(12;0.000372)|Glioma(11;0.00127)|Renal(390;0.00188)|Colorectal(325;0.00342)|Breast(487;0.00373)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.15)		Epithelial(90;3.08e-37)|GBM - Glioblastoma multiforme(13;1.36e-31)|OV - Ovarian serous cystadenocarcinoma(86;7.7e-19)|Colorectal(212;9.97e-08)|COAD - Colon adenocarcinoma(227;1.07e-05)|Kidney(185;6.16e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.00109)|BRCA - Breast invasive adenocarcinoma(365;0.0012)|STAD - Stomach adenocarcinoma(132;0.00346)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.193)		GGGCAGCGCACCTGGGAGAAG	0.637													7	40					0	0	0.001984	0	0
RERE	473	broad.mit.edu	37	1	8416241	8416241	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:8416241G>A	uc001ape.2	-	22	5215	c.4405C>T	c.(4405-4407)CCC>TCC	p.P1469S	RERE_uc001apf.2_Missense_Mutation_p.P1469S|RERE_uc001apd.2_Missense_Mutation_p.P915S	NM_012102	NP_036234	Q9P2R6	RERE_HUMAN	atrophin-1 like protein isoform a	1469	Pro-rich.				multicellular organismal development|NLS-bearing substrate import into nucleus	mitochondrion	poly-glutamine tract binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)|central_nervous_system(1)	2	Ovarian(185;0.0661)	all_epithelial(116;1.17e-21)|all_lung(118;1.4e-06)|Lung NSC(185;3.06e-06)|Renal(390;0.000147)|Breast(348;0.000206)|Colorectal(325;0.00187)|Hepatocellular(190;0.00825)|Ovarian(437;0.0253)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|all cancers(8;9.64e-67)|GBM - Glioblastoma multiforme(8;9.89e-33)|Colorectal(212;1.45e-07)|COAD - Colon adenocarcinoma(227;3.42e-05)|Kidney(185;6e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000533)|KIRC - Kidney renal clear cell carcinoma(229;0.00106)|STAD - Stomach adenocarcinoma(132;0.00118)|READ - Rectum adenocarcinoma(331;0.0419)|Lung(427;0.195)		GGCGGGTAGGGGAAGCGAGCC	0.642													5	60					0	0	0.003080	0	0
CA6	765	broad.mit.edu	37	1	9019055	9019055	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:9019055C>T	uc001apm.2	+	4	519	c.495C>T	c.(493-495)TTC>TTT	p.F165F	CA6_uc009vmn.2_Silent_p.F105F	NM_001215	NP_001206	P23280	CAH6_HUMAN	carbonic anhydrase VI precursor	165					one-carbon metabolic process	extracellular region	carbonate dehydratase activity|zinc ion binding	p.F165F(1)		ovary(2)	2	Ovarian(185;0.112)|all_lung(157;0.143)	all_epithelial(116;1.02e-19)|all_lung(118;3.6e-06)|Lung NSC(185;7.94e-06)|Renal(390;0.000147)|Breast(348;0.00123)|Colorectal(325;0.00205)|Hepatocellular(190;0.00825)|Ovarian(437;0.0228)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;6.9e-07)|COAD - Colon adenocarcinoma(227;8.28e-05)|Kidney(185;0.000268)|KIRC - Kidney renal clear cell carcinoma(229;0.000971)|STAD - Stomach adenocarcinoma(132;0.00184)|BRCA - Breast invasive adenocarcinoma(304;0.00192)|READ - Rectum adenocarcinoma(331;0.0649)		TGGCAGCCTTCGTTGAGGTAA	0.408													16	120					0	0	0.004990	0	0
PTCHD2	57540	broad.mit.edu	37	1	11596628	11596628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:11596628C>T	uc001ash.3	+	21	4202	c.4064C>T	c.(4063-4065)TCC>TTC	p.S1355F		NM_020780	NP_065831	Q9P2K9	PTHD2_HUMAN	patched domain containing 2	1355	Extracellular (Potential).				cholesterol homeostasis|regulation of lipid transport|smoothened signaling pathway	endoplasmic reticulum|integral to membrane|nuclear membrane	hedgehog receptor activity			skin(3)|ovary(2)|pancreas(1)|breast(1)	7	Ovarian(185;0.249)	Lung NSC(185;4.16e-05)|all_lung(284;4.76e-05)|Renal(390;0.000147)|Breast(348;0.00093)|Colorectal(325;0.00205)|Hepatocellular(190;0.00913)|Ovarian(437;0.00965)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|Colorectal(212;3.13e-07)|COAD - Colon adenocarcinoma(227;4.83e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000325)|Kidney(185;0.000877)|KIRC - Kidney renal clear cell carcinoma(229;0.00273)|STAD - Stomach adenocarcinoma(313;0.00766)|READ - Rectum adenocarcinoma(331;0.0549)		ACCCGGACTTCCTTCCTCAAG	0.667													8	14					0	0	0.004482	0	0
VPS13D	55187	broad.mit.edu	37	1	12321145	12321145	+	Silent	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:12321145G>T	uc001atv.2	+	12	1494	c.1353G>T	c.(1351-1353)GGG>GGT	p.G451G	VPS13D_uc001atw.2_Silent_p.G451G	NM_015378	NP_056193	Q5THJ4	VP13D_HUMAN	vacuolar protein sorting 13D isoform 1	451					protein localization					ovary(4)|pancreas(1)	5	Ovarian(185;0.249)	Lung NSC(185;4.08e-05)|all_lung(284;4.55e-05)|Renal(390;0.000147)|Colorectal(325;0.00058)|Breast(348;0.00093)|Ovarian(437;0.00965)|Hepatocellular(190;0.0202)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0327)|Colorectal(212;4.63e-06)|BRCA - Breast invasive adenocarcinoma(304;0.000289)|COAD - Colon adenocarcinoma(227;0.000801)|Kidney(185;0.00216)|KIRC - Kidney renal clear cell carcinoma(229;0.00544)|STAD - Stomach adenocarcinoma(313;0.012)|READ - Rectum adenocarcinoma(331;0.0476)|Lung(427;0.209)		CCCCAGAAGGGAATGTGGTTG	0.577													41	139					2.46787e-29	2.67711e-29	0.014410	1	0
PRAMEF2	65122	broad.mit.edu	37	1	12919635	12919635	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:12919635C>T	uc001aum.1	+	3	462	c.375C>T	c.(373-375)TTC>TTT	p.F125F		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	125											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TGTCCTGCTTCCCAGAGGCCA	0.537													60	243					0	0	0.014410	0	0
PRAMEF2	65122	broad.mit.edu	37	1	12921479	12921479	+	Missense_Mutation	SNP	C	T	T	rs140567467		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:12921479C>T	uc001aum.1	+	4	1357	c.1270C>T	c.(1270-1272)CGT>TGT	p.R424C		NM_023014	NP_075390	O60811	PRAM2_HUMAN	PRAME family member 2	424											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;2.4e-06)|Kidney(185;4.89e-05)|COAD - Colon adenocarcinoma(227;0.000152)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		TTCCTTGGTTCGTGTCAATTG	0.557													16	98					0	0	0.003330	0	0
PRAMEF18	391003	broad.mit.edu	37	1	13695911	13695911	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:13695911G>A	uc009vny.1	-	3	1101	c.1054C>T	c.(1054-1056)CAG>TAG	p.Q352*		NM_001099850	NP_001093320	Q5VWM3	PRA18_HUMAN	PRAME family member 18	352											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.00224)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		AAGAGGGTCTGAAGAGTGGCA	0.537													44	199					0	0	0.014410	0	0
CELA3B	23436	broad.mit.edu	37	1	22303555	22303555	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:22303555C>T	uc001bfk.2	+	1	138	c.23C>T	c.(22-24)TCC>TTC	p.S8F	CELA3B_uc009vqf.2_Missense_Mutation_p.S7F	NM_007352	NP_031378	P08861	CEL3B_HUMAN	elastase 3B, pancreatic preproprotein	8					cholesterol metabolic process|proteolysis	extracellular region	serine-type endopeptidase activity			ovary(1)	1						CTGCTCAGTTCCCTCCTCCTT	0.527													60	176					0	0	0.014410	0	0
EPHA8	2046	broad.mit.edu	37	1	22902822	22902822	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:22902822G>A	uc001bfx.1	+	3	397	c.272G>A	c.(271-273)CGA>CAA	p.R91Q	EPHA8_uc001bfw.2_Missense_Mutation_p.R91Q	NM_020526	NP_065387	P29322	EPHA8_HUMAN	ephrin receptor EphA8 isoform 1 precursor	91	Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			central_nervous_system(5)|breast(3)|lung(2)|large_intestine(1)|stomach(1)|skin(1)	13		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.29e-27)|Colorectal(126;1.61e-07)|COAD - Colon adenocarcinoma(152;1.14e-05)|GBM - Glioblastoma multiforme(114;1.74e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000554)|KIRC - Kidney renal clear cell carcinoma(1967;0.00272)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.199)		TGGGTCCCCCGAGACGGCGCC	0.612													12	41					0	0	0.013537	0	0
C1QB	713	broad.mit.edu	37	1	22987512	22987512	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:22987512T>A	uc001bgd.2	+	3	527	c.395T>A	c.(394-396)GTC>GAC	p.V132D		NM_000491	NP_000482	P02746	C1QB_HUMAN	complement component 1, q subcomponent, B chain	132	C1q.				complement activation, classical pathway|innate immune response	collagen|complement component C1 complex				breast(1)	1		Colorectal(325;3.46e-05)|Lung NSC(340;6.55e-05)|all_lung(284;9.87e-05)|Renal(390;0.000219)|Breast(348;0.00262)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0227)|OV - Ovarian serous cystadenocarcinoma(117;7.06e-27)|Colorectal(126;1.58e-07)|GBM - Glioblastoma multiforme(114;6.72e-06)|COAD - Colon adenocarcinoma(152;1.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000551)|KIRC - Kidney renal clear cell carcinoma(1967;0.0027)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.198)	Abciximab(DB00054)|Adalimumab(DB00051)|Alefacept(DB00092)|Alemtuzumab(DB00087)|Basiliximab(DB00074)|Bevacizumab(DB00112)|Cetuximab(DB00002)|Daclizumab(DB00111)|Efalizumab(DB00095)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Natalizumab(DB00108)|Palivizumab(DB00110)|Rituximab(DB00073)|Tositumomab(DB00081)|Trastuzumab(DB00072)	ACCATCAACGTCCCCCTGCGC	0.607													10	90					0	0	0.013537	0	0
MYOM3	127294	broad.mit.edu	37	1	24388476	24388476	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:24388476C>T	uc001bin.3	-	33	4057	c.3894G>A	c.(3892-3894)GGG>GGA	p.G1298G	MYOM3_uc001bil.3_Silent_p.G191G|MYOM3_uc001bim.3_Silent_p.G955G	NM_152372	NP_689585	Q5VTT5	MYOM3_HUMAN	myomesin family, member 3	1298										skin(2)|ovary(1)	3		Colorectal(325;3.55e-05)|Renal(390;0.000703)|Lung NSC(340;0.001)|all_lung(284;0.0014)|Ovarian(437;0.00351)|Breast(348;0.0126)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0228)|OV - Ovarian serous cystadenocarcinoma(117;5.31e-24)|Colorectal(126;7.52e-08)|COAD - Colon adenocarcinoma(152;4.01e-06)|GBM - Glioblastoma multiforme(114;4.36e-06)|BRCA - Breast invasive adenocarcinoma(304;0.00108)|KIRC - Kidney renal clear cell carcinoma(1967;0.00404)|STAD - Stomach adenocarcinoma(196;0.00966)|READ - Rectum adenocarcinoma(331;0.0678)|Lung(427;0.153)		GGACTTCCTTCCCTGCAGCTA	0.517													24	156					0	0	0.005443	0	0
MAN1C1	57134	broad.mit.edu	37	1	26090398	26090398	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:26090398G>A	uc001bkm.2	+	7	1411	c.1081G>A	c.(1081-1083)GAA>AAA	p.E361K	MAN1C1_uc009vry.1_Missense_Mutation_p.E181K	NM_020379	NP_065112	Q9NR34	MA1C1_HUMAN	mannosidase, alpha, class 1C, member 1	361	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	integral to Golgi membrane	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			skin(1)	1		Colorectal(325;3.78e-05)|Lung NSC(340;0.000181)|all_lung(284;0.000245)|Renal(390;0.000714)|Ovarian(437;0.00159)|Breast(348;0.0156)|Myeloproliferative disorder(586;0.0257)|all_neural(195;0.0515)|Esophageal squamous(538;0.232)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0574)|OV - Ovarian serous cystadenocarcinoma(117;2.46e-25)|Colorectal(126;1.15e-07)|COAD - Colon adenocarcinoma(152;4.31e-06)|STAD - Stomach adenocarcinoma(196;0.00125)|BRCA - Breast invasive adenocarcinoma(304;0.00141)|KIRC - Kidney renal clear cell carcinoma(1967;0.00146)|GBM - Glioblastoma multiforme(114;0.0149)|READ - Rectum adenocarcinoma(331;0.0803)		CAGGAAGATCGAAAAGCCCTT	0.587													24	71					0	0	0.006320	0	0
CNKSR1	10256	broad.mit.edu	37	1	26514782	26514782	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:26514782C>T	uc001bln.3	+	17	1591	c.1533C>T	c.(1531-1533)CCC>CCT	p.P511P	CNKSR1_uc001blm.3_Silent_p.P504P|CNKSR1_uc009vsd.2_Silent_p.P246P|CNKSR1_uc009vse.2_Silent_p.P246P|CNKSR1_uc001blo.2_Silent_p.P246P|CATSPER4_uc010oey.1_5'Flank|CATSPER4_uc010oez.1_5'Flank|CATSPER4_uc009vsf.2_5'Flank	NM_006314	NP_006305	Q969H4	CNKR1_HUMAN	connector enhancer of kinase suppressor of Ras	511					Rho protein signal transduction|transmembrane receptor protein tyrosine kinase signaling pathway	cell cortex|cell-cell junction	protein binding, bridging			lung(1)|kidney(1)	2		Colorectal(325;3.46e-05)|all_lung(284;0.000116)|Lung NSC(340;0.000154)|Renal(390;0.0007)|Ovarian(437;0.00473)|Breast(348;0.0133)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0298)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0178)|OV - Ovarian serous cystadenocarcinoma(117;2.72e-26)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;9.31e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00072)|BRCA - Breast invasive adenocarcinoma(304;0.000959)|STAD - Stomach adenocarcinoma(196;0.00151)|GBM - Glioblastoma multiforme(114;0.00823)|READ - Rectum adenocarcinoma(331;0.0649)		GCCGGGCCCCCCCACCCCGAG	0.542													6	44					0	0	0.003080	0	0
SYTL1	84958	broad.mit.edu	37	1	27673962	27673962	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:27673962G>A	uc001bnw.1	+	3	409	c.242G>A	c.(241-243)GGG>GAG	p.G81E	SYTL1_uc001bnv.1_Missense_Mutation_p.G81E|SYTL1_uc009vsu.1_Missense_Mutation_p.G81E|SYTL1_uc001bnx.2_Missense_Mutation_p.G81E|SYTL1_uc009vsv.1_Missense_Mutation_p.G81E	NM_032872	NP_116261	Q8IYJ3	SYTL1_HUMAN	synaptotagmin-like 1	81	RabBD.				exocytosis|intracellular protein transport	extrinsic to plasma membrane|melanosome|soluble fraction	neurexin binding|Rab GTPase binding			ovary(1)	1		Colorectal(325;0.000147)|all_lung(284;0.000366)|Lung NSC(340;0.000548)|Renal(390;0.00211)|Breast(348;0.0115)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0908)|all_neural(195;0.0966)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0416)|OV - Ovarian serous cystadenocarcinoma(117;1.5e-28)|Colorectal(126;1.24e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|BRCA - Breast invasive adenocarcinoma(304;0.0013)|KIRC - Kidney renal clear cell carcinoma(1967;0.00158)|STAD - Stomach adenocarcinoma(196;0.00303)|READ - Rectum adenocarcinoma(331;0.0419)		ATCCTGACAGGGGACTGGTTC	0.572													12	52					0	0	0.010729	0	0
PTAFR	5724	broad.mit.edu	37	1	28477268	28477268	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:28477268G>A	uc001bpl.2	-	2	392	c.265C>T	c.(265-267)CTG>TTG	p.L89L	PTAFR_uc001bpm.3_Silent_p.L89L|PTAFR_uc009vte.2_Silent_p.L89L	NM_000952	NP_000943	P25105	PTAFR_HUMAN	platelet-activating factor receptor	89	Extracellular (Potential).				chemotaxis|inflammatory response|interferon-gamma-mediated signaling pathway|phosphatidylinositol-mediated signaling	integral to plasma membrane|nucleus	phospholipid binding|platelet activating factor receptor activity				0		Colorectal(325;0.000147)|Renal(390;0.00357)|Lung NSC(340;0.00715)|all_lung(284;0.00732)|Breast(348;0.0174)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0545)|all_neural(195;0.0557)		UCEC - Uterine corpus endometrioid carcinoma (279;0.215)|OV - Ovarian serous cystadenocarcinoma(117;6e-22)|Colorectal(126;3.04e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|KIRC - Kidney renal clear cell carcinoma(1967;0.00279)|BRCA - Breast invasive adenocarcinoma(304;0.00595)|STAD - Stomach adenocarcinoma(196;0.00678)|READ - Rectum adenocarcinoma(331;0.0649)		ACGTTGCACAGGAATTTGGGG	0.527													9	40					0	0	0.006214	0	0
SPOCD1	90853	broad.mit.edu	37	1	32256610	32256610	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:32256610C>T	uc001bts.1	-	16	3303	c.3245G>A	c.(3244-3246)GGA>GAA	p.G1082E	SPOCD1_uc001btr.1_3'UTR|SPOCD1_uc001btt.2_Missense_Mutation_p.G374E|SPOCD1_uc001btu.2_Missense_Mutation_p.G1069E|SPOCD1_uc001btv.2_Missense_Mutation_p.G562E	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	1082					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		AGCAGAGATTCCCCTTGGAGC	0.672													16	37					0	0	0.004990	0	0
CSMD2	114784	broad.mit.edu	37	1	34112404	34112404	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:34112404G>A	uc001bxn.1	-	29	4527	c.4498C>T	c.(4498-4500)CAT>TAT	p.H1500Y	CSMD2_uc001bxm.1_Missense_Mutation_p.H1540Y|CSMD2_uc001bxo.1_Missense_Mutation_p.H413Y	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1500	CUB 9.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				TCGTAGATATGGAGGAAGTCA	0.547													5	18					0	0	0.000602	0	0
CSMD2	114784	broad.mit.edu	37	1	34158602	34158602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:34158602C>T	uc001bxn.1	-	25	3889	c.3860G>A	c.(3859-3861)GGG>GAG	p.G1287E	CSMD2_uc001bxm.1_Missense_Mutation_p.G1327E|CSMD2_uc001bxo.1_Missense_Mutation_p.G200E	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	1287	CUB 8.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				AGCTGGATACCCGGGTGACAG	0.552													17	142					0	0	0.007413	0	0
DLGAP3	58512	broad.mit.edu	37	1	35334585	35334585	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:35334585G>A	uc001byc.2	-	7	2106	c.2106C>T	c.(2104-2106)GCC>GCT	p.A702A		NM_001080418	NP_001073887	O95886	DLGP3_HUMAN	discs, large (Drosophila) homolog-associated	702					cell-cell signaling	cell junction|postsynaptic density|postsynaptic membrane				ovary(3)	3		Myeloproliferative disorder(586;0.0393)				CAAACTGCAGGGCCTTGTCTT	0.677													13	17					0	0	0.013537	0	0
EPHA10	284656	broad.mit.edu	37	1	38197142	38197142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:38197142C>T	uc009vvi.2	-	7	1690	c.1604G>A	c.(1603-1605)GGG>GAG	p.G535E	EPHA10_uc009vvh.1_RNA|EPHA10_uc001cbu.2_RNA|EPHA10_uc001cbv.1_RNA	NM_001099439	NP_001092909	Q5JZY3	EPHAA_HUMAN	EPH receptor A10 isofom 3	535	Fibronectin type-III 2.|Extracellular (Potential).					extracellular region|integral to membrane|integral to plasma membrane	ATP binding|ephrin receptor activity|protein binding|transmembrane-ephrin receptor activity			breast(4)|stomach(3)|lung(1)	8	Acute lymphoblastic leukemia(166;0.074)|all_hematologic(146;0.197)	Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				CCAGGATGGCCCCGGGGAAGC	0.597													8	107					0	0	0.003080	0	0
HIVEP3	59269	broad.mit.edu	37	1	42046639	42046639	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:42046639G>A	uc001cgz.3	-	4	5043	c.3830C>T	c.(3829-3831)CCC>CTC	p.P1277L	HIVEP3_uc001cha.3_Missense_Mutation_p.P1277L|HIVEP3_uc001cgy.2_RNA	NM_024503	NP_078779	Q5T1R4	ZEP3_HUMAN	human immunodeficiency virus type I enhancer	1277					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(4)|large_intestine(1)|central_nervous_system(1)	6	Ovarian(52;0.00769)|all_hematologic(146;0.109)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0367)				CTCTGTGCTGGGGGAGAGGCC	0.617													6	34					0	0	0.001984	0	0
KIAA0467	23334	broad.mit.edu	37	1	43905375	43905375	+	Missense_Mutation	SNP	G	A	A	rs146140125	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:43905375G>A	uc001cjk.1	+	35	4742	c.4280G>A	c.(4279-4281)CGA>CAA	p.R1427Q		NM_015284	NP_056099	Q5T011	SZT2_HUMAN	hypothetical protein LOC23334	2326						peroxisome					0	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				GACCCACTGCGAGAGGAGGAA	0.607													11	83					0	0	0.010729	0	0
SLC6A9	6536	broad.mit.edu	37	1	44463570	44463570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:44463570G>A	uc001cll.2	-	13	2075	c.1883C>T	c.(1882-1884)GCC>GTC	p.A628V	SLC6A9_uc009vxe.2_Intron|SLC6A9_uc010okm.1_Intron|SLC6A9_uc001clm.2_Missense_Mutation_p.A574V|SLC6A9_uc009vxd.2_RNA|SLC6A9_uc010okn.1_Missense_Mutation_p.A559V|SLC6A9_uc001cln.2_Missense_Mutation_p.A555V|SLC6A9_uc010oko.1_Missense_Mutation_p.A444V	NM_201649	NP_964012	P48067	SC6A9_HUMAN	solute carrier family 6 member 9 isoform 2	628	Helical; Name=12; (Potential).					integral to plasma membrane|membrane fraction	glycine:sodium symporter activity|neurotransmitter:sodium symporter activity				0	Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0511)			Glycine(DB00145)	CCGGAACATGGCGTAGAGGGG	0.642													8	33					0	0	0.004482	0	0
NASP	4678	broad.mit.edu	37	1	46056914	46056914	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:46056914C>G	uc001coi.1	+	2	181	c.79C>G	c.(79-81)CCT>GCT	p.P27A	NASP_uc010olq.1_Missense_Mutation_p.P27A|NASP_uc001coh.1_Silent_p.L4L|NASP_uc001coj.1_Missense_Mutation_p.P27A|NASP_uc010olr.1_Missense_Mutation_p.P27A	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	27					blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					TGTTCCTGCTCCTTCTACATC	0.284													21	78					0	0	0.003330	0	0
C1orf175	374977	broad.mit.edu	37	1	55167774	55167774	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:55167774C>T	uc010ooe.1	+	20	3621	c.3297C>T	c.(3295-3297)GTC>GTT	p.V1099V	C1orf175_uc001cxq.2_RNA|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.V617V|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.V301V	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1099	HEAT 3.			V -> D (in Ref. 2; CAH18687, 1; BAC87334 and 4; AAH29191).		integral to membrane	binding				0						CACGAGAGGTCGTGCGCTCCT	0.612													6	34					0	0	0.004482	0	0
C1orf175	374977	broad.mit.edu	37	1	55175713	55175713	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:55175713C>T	uc010ooe.1	+	24	4149	c.3825C>T	c.(3823-3825)TCC>TCT	p.S1275S	C1orf175_uc001cxq.2_Intron|C1orf175_uc001cxs.2_RNA|C1orf175_uc010ood.1_Silent_p.S793S|C1orf175_uc010oof.1_RNA|C1orf175_uc001cxr.1_RNA|C1orf175_uc009vzq.1_RNA|C1orf175_uc001cxt.1_RNA|C1orf175_uc009vzr.1_Silent_p.S476S	NM_001039464	NP_001034553	Q68CQ1	HEAT8_HUMAN	hypothetical protein LOC374977	1275						integral to membrane	binding				0						GGCAGAACTCCTGGCTGCCGC	0.617													4	35					0	0	0.009096	0	0
PRKAA2	5563	broad.mit.edu	37	1	57171786	57171786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:57171786C>T	uc001cyk.3	+	8	1386	c.1315C>T	c.(1315-1317)CGT>TGT	p.R439C		NM_006252	NP_006243	P54646	AAPK2_HUMAN	AMP-activated protein kinase alpha 2 catalytic	439					carnitine shuttle|cell cycle arrest|cholesterol biosynthetic process|energy reserve metabolic process|fatty acid biosynthetic process|insulin receptor signaling pathway|regulation of fatty acid biosynthetic process|regulation of fatty acid oxidation	cytosol|nucleoplasm	ATP binding|metal ion binding			breast(4)|ovary(1)|stomach(1)	6						ATACCATCTTCGTGTAAGAAG	0.294													7	38					0	0	0.003080	0	0
C1orf168	199920	broad.mit.edu	37	1	57219560	57219560	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:57219560C>T	uc001cym.3	-	8	1585	c.1179G>A	c.(1177-1179)TTG>TTA	p.L393L	C1orf168_uc009vzu.1_Intron|C1orf168_uc001cyl.2_RNA	NM_001004303	NP_001004303	Q5VWT5	CA168_HUMAN	hypothetical protein LOC199920	393										ovary(3)|skin(2)	5						TTTTAGGTTTCAATTCACATG	0.328													4	35					0	0	0.009096	0	0
DAB1	1600	broad.mit.edu	37	1	57491658	57491658	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:57491658G>A	uc001cys.1	-	12	1456	c.782C>T	c.(781-783)CCC>CTC	p.P261L	DAB1_uc001cyt.1_Missense_Mutation_p.P259L|DAB1_uc001cyq.1_Missense_Mutation_p.P259L|DAB1_uc001cyr.1_Missense_Mutation_p.P175L|DAB1_uc009vzw.1_Missense_Mutation_p.P243L|DAB1_uc009vzx.1_Missense_Mutation_p.P261L	NM_021080	NP_066566	O75553	DAB1_HUMAN	disabled homolog 1	294					cell differentiation|nervous system development					skin(2)|ovary(1)	3						ACTTACGGGGGGAGAGGTTAT	0.363													12	110					0	0	0.002450	0	0
DNAJC6	9829	broad.mit.edu	37	1	65849957	65849957	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:65849957C>T	uc001dcd.1	+	6	741	c.577C>T	c.(577-579)CGA>TGA	p.R193*	DNAJC6_uc001dcc.1_Nonsense_Mutation_p.R224*|DNAJC6_uc010opc.1_Nonsense_Mutation_p.R180*|DNAJC6_uc001dce.1_Nonsense_Mutation_p.R250*	NM_014787	NP_055602	O75061	AUXI_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 6	193	Phosphatase tensin-type.				cellular membrane organization|post-Golgi vesicle-mediated transport	cytosol	heat shock protein binding|protein tyrosine phosphatase activity|SH3 domain binding			large_intestine(1)|lung(1)|ovary(1)	3						CCCAGCCATTCGATTGCTATA	0.448													12	43					0	0	0.013537	0	0
LRRC7	57554	broad.mit.edu	37	1	70460279	70460279	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:70460279G>A	uc001dep.2	+	9	883	c.853G>A	c.(853-855)GAC>AAC	p.D285N	LRRC7_uc009wbg.2_5'UTR	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	285	LRR 12.					centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						AAAAGTAGATGACAATCAACT	0.333													12	91					0	0	0.001855	0	0
LRRC7	57554	broad.mit.edu	37	1	70504702	70504702	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:70504702C>T	uc001dep.2	+	19	3111	c.3081C>T	c.(3079-3081)GTC>GTT	p.V1027V	LRRC7_uc009wbg.2_Silent_p.V311V|LRRC7_uc001deq.2_Silent_p.V268V	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7	1027						centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						CAAAAAAAGTCTATCAGTTTG	0.458													5	21					0	0	0.000602	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74492602	74492602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:74492602C>T	uc001dfy.3	-	8	1962	c.1770G>A	c.(1768-1770)ATG>ATA	p.M590I	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	590	Potential.									ovary(2)	2						CAAAGGCAATCATATCCATAA	0.289													6	37					0	0	0.001168	0	0
BTBD8	284697	broad.mit.edu	37	1	92573483	92573483	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:92573483T>A	uc001doo.2	+	4	854	c.587T>A	c.(586-588)TTA>TAA	p.L196*	BTBD8_uc010otc.1_RNA	NM_183242	NP_899065	Q5XKL5	BTBD8_HUMAN	BTB (POZ) domain containing 8	196						nucleus				ovary(1)	1		all_lung(203;0.0484)|Lung NSC(277;0.126)|Glioma(108;0.222)		all cancers(265;0.0153)|Epithelial(280;0.0982)		GGAGAAGATTTATTGAAGCTT	0.303													7	45					0	0	0.003080	0	0
ARHGAP29	9411	broad.mit.edu	37	1	94697070	94697070	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:94697070G>A	uc001dqj.3	-	2	467	c.98C>T	c.(97-99)TCC>TTC	p.S33F	ARHGAP29_uc009wdq.1_RNA|ARHGAP29_uc001dql.2_Missense_Mutation_p.S33F	NM_004815	NP_004806	Q52LW3	RHG29_HUMAN	PTPL1-associated RhoGAP 1	33					Rho protein signal transduction	cytosol	metal ion binding|Rho GTPase activator activity			breast(4)|skin(3)|lung(2)|upper_aerodigestive_tract(1)|ovary(1)	11		all_lung(203;0.000732)|Lung NSC(277;0.00328)		all cancers(265;0.0187)|Epithelial(280;0.159)		GGAACTTAAGGACTTGAGCCC	0.383													14	74					0	0	0.002450	0	0
SNX7	51375	broad.mit.edu	37	1	99164351	99164352	+	Missense_Mutation	DNP	GC	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:99164351_99164352GC>AA	uc010ouc.1	+	6	980_981	c.928_929GC>AA	c.(928-930)GCC>AAC	p.A310N	SNX7_uc001dsa.2_Missense_Mutation_p.A246N|SNX7_uc010oud.1_Missense_Mutation_p.A255N	NM_015976	NP_057060	Q9UNH6	SNX7_HUMAN	sorting nexin 7 isoform a	246					cell communication|protein transport	cytoplasmic vesicle membrane	phosphatidylinositol binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)	3		all_epithelial(167;7.64e-07)|all_lung(203;0.0006)|Lung NSC(277;0.00137)		Epithelial(280;0.0521)|all cancers(265;0.0687)|COAD - Colon adenocarcinoma(174;0.15)|Lung(183;0.207)|Colorectal(170;0.234)		AAAGGATGTTGCCAGCTGCATT	0.416													18	41					0	0	0.004672	0	0
AGL	178	broad.mit.edu	37	1	100357264	100357264	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:100357264C>T	uc001dsi.1	+	23	3452	c.3052C>T	c.(3052-3054)CTT>TTT	p.L1018F	AGL_uc001dsj.1_Missense_Mutation_p.L1018F|AGL_uc001dsk.1_Missense_Mutation_p.L1018F|AGL_uc001dsl.1_Missense_Mutation_p.L1018F|AGL_uc001dsm.1_Missense_Mutation_p.L1002F|AGL_uc001dsn.1_Missense_Mutation_p.L1001F	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	1018	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		ATATACCACTCTTCTGGATAC	0.388													10	72					0	0	0.006214	0	0
OLFM3	118427	broad.mit.edu	37	1	102270254	102270254	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:102270254C>T	uc001duf.2	-	6	1048	c.977G>A	c.(976-978)CGA>CAA	p.R326Q	OLFM3_uc001dug.2_Missense_Mutation_p.R306Q|OLFM3_uc001duh.2_RNA|OLFM3_uc001dui.2_RNA|OLFM3_uc001duj.2_Missense_Mutation_p.R231Q|OLFM3_uc001due.2_RNA	NM_058170	NP_477518	Q96PB7	NOE3_HUMAN	olfactomedin 3	326	Olfactomedin-like.					extracellular region				ovary(2)|skin(1)	3		all_epithelial(167;1.87e-06)|all_lung(203;8.12e-05)|Lung NSC(277;0.000189)		all cancers(265;0.0843)|Epithelial(280;0.0921)|COAD - Colon adenocarcinoma(174;0.145)		CTCCAGGCTTCGTTGGGCAAG	0.438													6	35					0	0	0.001984	0	0
C1orf59	113802	broad.mit.edu	37	1	109191189	109191189	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:109191189C>T	uc001dvt.3	-	8	1419	c.1181G>A	c.(1180-1182)TGA>TAA	p.*394*	C1orf59_uc001dvu.3_Silent_p.*394*|C1orf59_uc009wer.2_3'UTR	NM_001102592	NP_001096062	Q5T8I9	HENMT_HUMAN	hypothetical protein LOC113802	394					gene silencing by RNA|piRNA metabolic process	P granule	metal ion binding|O-methyltransferase activity|RNA binding|RNA methyltransferase activity				0		all_epithelial(167;0.000154)|all_lung(203;0.00026)|Lung NSC(277;0.000508)		Colorectal(144;0.0152)|Lung(183;0.0895)|COAD - Colon adenocarcinoma(174;0.114)|Epithelial(280;0.163)		AAACATGGTTCAAAACTCAAA	0.363													5	18					0	0	0.001168	0	0
FNDC7	163479	broad.mit.edu	37	1	109275946	109275946	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:109275946C>T	uc001dvx.2	+	10	1932	c.1932C>T	c.(1930-1932)ATC>ATT	p.I644I	FNDC7_uc010ova.1_Silent_p.I411I	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	645	Fibronectin type-III 8.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		CTAATGGCATCCGGATCTACT	0.498													43	146					0	0	0.006999	0	0
SLC6A17	388662	broad.mit.edu	37	1	110717561	110717561	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:110717561G>A	uc009wfq.2	+	5	1193	c.732G>A	c.(730-732)AAG>AAA	p.K244K		NM_001010898	NP_001010898	Q9H1V8	S6A17_HUMAN	solute carrier family 6, member 17	244	Cytoplasmic (Potential).				alanine transport|glycine transport|leucine transport|proline transport	cell junction|integral to plasma membrane|synaptic vesicle membrane	neurotransmitter:sodium symporter activity			ovary(1)|pancreas(1)	2		all_cancers(81;9.9e-06)|all_epithelial(167;3.24e-06)|all_lung(203;0.000116)|Lung NSC(277;0.000233)		Lung(183;0.0282)|Epithelial(280;0.0372)|all cancers(265;0.0378)|Colorectal(144;0.0438)|LUSC - Lung squamous cell carcinoma(189;0.151)|COAD - Colon adenocarcinoma(174;0.151)		CTGTCGTTAAGGGCATCCAGT	0.602													9	29					0	0	0.006214	0	0
CTTNBP2NL	55917	broad.mit.edu	37	1	112999065	112999065	+	Silent	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:112999065T>C	uc001ebx.2	+	6	1179	c.951T>C	c.(949-951)TTT>TTC	p.F317F	CTTNBP2NL_uc001ebz.2_5'Flank	NM_018704	NP_061174	Q9P2B4	CT2NL_HUMAN	CTTNBP2 N-terminal like	317						actin cytoskeleton	protein binding			central_nervous_system(2)|ovary(1)	3		all_cancers(81;0.00064)|all_epithelial(167;0.000415)|all_lung(203;0.00045)|Lung NSC(69;0.000705)		Lung(183;0.0234)|all cancers(265;0.0246)|Epithelial(280;0.0342)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		CAGAGAGTTTTCCAGCAGAAA	0.483													36	102					0	0	0.003271	0	0
NRAS	4893	broad.mit.edu	37	1	115256527	115256528	+	Missense_Mutation	DNP	CT	TG	TG	rs121913255		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:115256527_115256528CT>TG	uc009wgu.2	-	3	437_438	c.183_184AG>CA	c.(181-186)CAAGAA>CACAAA	p.61_62QE>HK		NM_002524	NP_002515	P01111	RASN_HUMAN	neuroblastoma RAS viral (v-ras) oncogene homolog	61_62					activation of MAPKK activity|axon guidance|blood coagulation|epidermal growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|nerve growth factor receptor signaling pathway|Ras protein signal transduction	Golgi membrane|plasma membrane	GTP binding|GTPase activity	p.Q61R(757)|p.Q61K(537)|p.Q61L(147)|p.Q61H(95)|p.Q61P(21)|p.Q61E(9)|p.Q61?(4)|p.Q61Q(3)|p.Q61_E62>HK(1)		haematopoietic_and_lymphoid_tissue(1008)|skin(956)|thyroid(334)|large_intestine(62)|NS(60)|soft_tissue(32)|lung(31)|upper_aerodigestive_tract(25)|urinary_tract(12)|liver(10)|adrenal_gland(9)|autonomic_ganglia(8)|testis(8)|central_nervous_system(8)|prostate(8)|breast(7)|biliary_tract(6)|ovary(6)|stomach(5)|pancreas(5)|endometrium(2)|kidney(2)|cervix(2)|eye(1)	2607	all_epithelial(7;5.11e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		CTGTACTCTTCTTGTCCAGCTG	0.46	Q61H(ME1_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|Q61H(RD_SOFT_TISSUE)	50	Mis		melanoma|MM|AML|thyroid				Noonan_syndrome	TSP Lung(23;0.16)|Multiple Myeloma(1;<1E-6)			33	123					0	0	0.004672	0	0
VANGL1	81839	broad.mit.edu	37	1	116228079	116228079	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:116228079G>A	uc001efv.1	+	7	1516	c.1245G>A	c.(1243-1245)CAG>CAA	p.Q415Q	VANGL1_uc009wgy.1_Silent_p.Q413Q	NM_138959	NP_620409	Q8TAA9	VANG1_HUMAN	vang-like 1	415	Cytoplasmic (Potential).				multicellular organismal development	integral to membrane	protein binding			central_nervous_system(1)	1	Lung SC(450;0.211)	all_cancers(81;1.24e-06)|all_epithelial(167;1.02e-06)|all_lung(203;7.95e-06)|Lung NSC(69;4.97e-05)		Lung(183;0.0171)|Colorectal(144;0.0686)|LUSC - Lung squamous cell carcinoma(189;0.0903)|all cancers(265;0.108)|COAD - Colon adenocarcinoma(174;0.111)|Epithelial(280;0.12)		CCCGGCAGCAGAACTACCACA	0.652													5	35					0	0	0.001168	0	0
PDE4DIP	9659	broad.mit.edu	37	1	144864155	144864155	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:144864155G>A	uc001elw.3	-	36	6231	c.5940C>T	c.(5938-5940)TCC>TCT	p.S1980S	NBPF10_uc009wir.2_Intron|NBPF9_uc010oye.1_Intron|NBPF9_uc010oyf.1_Intron|NBPF9_uc010oyg.1_Intron|PDE4DIP_uc001elk.1_Intron|PDE4DIP_uc001ell.1_Intron|PDE4DIP_uc001elm.3_Intron|PDE4DIP_uc001eln.3_Intron|PDE4DIP_uc001elo.2_Intron|PDE4DIP_uc001elx.3_Silent_p.S1874S|PDE4DIP_uc001elv.3_Silent_p.S987S|PDE4DIP_uc001ema.2_Silent_p.S167S	NM_014644	NP_055459	Q5VU43	MYOME_HUMAN	phosphodiesterase 4D interacting protein isoform	1980	Potential.				cellular protein complex assembly	centrosome|Golgi apparatus|myofibril|nucleus	enzyme binding			ovary(4)|haematopoietic_and_lymphoid_tissue(1)	5				Colorectal(2;0.0829)|COAD - Colon adenocarcinoma(2;0.126)		TTTCCTGGAGGGAAAGACGTT	0.438			T	PDGFRB	MPD								38	446					0	0	0.008740	0	0
NBPF10	100132406	broad.mit.edu	37	1	145367767	145367767	+	Missense_Mutation	SNP	G	A	A	rs77484671		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:145367767G>A	uc001end.3	+	85	10623	c.10588G>A	c.(10588-10590)GAA>AAA	p.E3530K	NBPF9_uc010oye.1_Intron|NBPF10_uc001emp.3_Intron|NBPF10_uc010oyi.1_Intron|NBPF10_uc010oyk.1_Intron|NBPF10_uc010oyl.1_Intron	NM_001039703	NP_001034792	A6NDV3	A6NDV3_HUMAN	hypothetical protein LOC100132406	3455											0	all_hematologic(923;0.032)			Colorectal(1306;1.36e-07)|KIRC - Kidney renal clear cell carcinoma(1967;0.00258)		atcaaagaaggaaagaagaag	0.254													4	31					0	0	0.001168	0	0
ANKRD34A	284615	broad.mit.edu	37	1	145474217	145474217	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:145474217G>A	uc001enq.1	+	4	2182	c.889G>A	c.(889-891)GAC>AAC	p.D297N	NBPF10_uc001emp.3_Intron|LIX1L_uc001enr.2_5'Flank	NM_001039888	NP_001034977	Q69YU3	AN34A_HUMAN	ankyrin repeat domain 34	297	Pro-rich.										0	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGGCCCTGAGGACCCGCCCCC	0.642													11	22					0	0	0.010729	0	0
SV2A	9900	broad.mit.edu	37	1	149884923	149884923	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:149884923C>T	uc001etg.2	-	2	961	c.470G>A	c.(469-471)CGG>CAG	p.R157Q	SV2A_uc001eth.2_Missense_Mutation_p.R157Q	NM_014849	NP_055664	Q7L0J3	SV2A_HUMAN	synaptic vesicle glycoprotein 2	157	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|endoplasmic reticulum|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			ovary(6)|pancreas(1)	7	Breast(34;0.00769)|all_hematologic(923;0.127)|Colorectal(459;0.171)		LUSC - Lung squamous cell carcinoma(543;0.221)|STAD - Stomach adenocarcinoma(528;0.247)		Levetiracetam(DB01202)	GCCACACTCCCGTAGGATGGC	0.617													9	45					0	0	0.008291	0	0
ARNT	405	broad.mit.edu	37	1	150804340	150804340	+	Silent	SNP	G	A	A	rs146538917	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:150804340G>A	uc001evr.1	-	10	1052	c.909C>T	c.(907-909)TTC>TTT	p.F303F	ARNT_uc001evs.1_Silent_p.F288F|ARNT_uc009wmb.1_Silent_p.F294F|ARNT_uc009wmc.1_Silent_p.F303F|ARNT_uc009wmd.1_Silent_p.F288F|ARNT_uc009wme.1_Silent_p.F303F|ARNT_uc010pcl.1_Silent_p.F287F	NM_001668	NP_001659	P27540	ARNT_HUMAN	aryl hydrocarbon receptor nuclear translocator	303					positive regulation of hormone biosynthetic process|positive regulation vascular endothelial growth factor production|regulation of transcription from RNA polymerase II promoter in response to oxidative stress|response to hypoxia		aryl hydrocarbon receptor binding|protein heterodimerization activity|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription coactivator activity			skin(4)|lung(3)|central_nervous_system(1)|kidney(1)	9	all_lung(15;9e-35)|Lung NSC(24;3.45e-31)|Lung SC(34;0.00471)|Ovarian(49;0.0167)|all_hematologic(923;0.0597)|Hepatocellular(266;0.108)|Melanoma(130;0.185)		UCEC - Uterine corpus endometrioid carcinoma (35;0.02)|BRCA - Breast invasive adenocarcinoma(12;0.00606)|LUSC - Lung squamous cell carcinoma(543;0.211)			GGACCACCACGAAGTGAGGTT	0.448			T	ETV6	AML								22	48					0	0	0.004656	0	0
TCHHL1	126637	broad.mit.edu	37	1	152059262	152059262	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152059262G>A	uc001ezo.1	-	3	961	c.896C>T	c.(895-897)CCC>CTC	p.P299L		NM_001008536	NP_001008536	Q5QJ38	TCHL1_HUMAN	trichohyalin-like 1	299							calcium ion binding			ovary(1)|skin(1)	2	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.246)			CTGTGAACTGGGCTCATCTTC	0.433													22	171					0	0	0.004656	0	0
TCHH	7062	broad.mit.edu	37	1	152080273	152080273	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152080273C>T	uc001ezp.2	-	2	5420	c.5420G>A	c.(5419-5421)AGG>AAG	p.R1807K	TCHH_uc009wne.1_Missense_Mutation_p.R1807K	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1807	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CTGTTCTTCCCTCTCCTGGCG	0.602													10	59					0	0	0.010729	0	0
FLG	2312	broad.mit.edu	37	1	152276763	152276763	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152276763C>T	uc001ezu.1	-	3	10635	c.10599G>A	c.(10597-10599)AGG>AGA	p.R3533R		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	3533	Ser-rich.|Filaggrin 21.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATCCCTGGTTCCTGCTTGTCC	0.577									Ichthyosis				54	142					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152279862	152279862	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152279862C>A	uc001ezu.1	-	3	7536	c.7500G>T	c.(7498-7500)AGG>AGT	p.R2500S		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	2500	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			AGGCATCAGACCTTCCCTGGG	0.557									Ichthyosis				38	292					3.61848e-18	3.9125e-18	0.007835	1	0
FLG	2312	broad.mit.edu	37	1	152281969	152281969	+	Missense_Mutation	SNP	C	T	T	rs141235242		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152281969C>T	uc001ezu.1	-	3	5429	c.5393G>A	c.(5392-5394)CGA>CAA	p.R1798Q		NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	1798	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			GGAGCTGTCTCGTGCCTGCTC	0.597									Ichthyosis				50	282					0	0	0.014410	0	0
FLG	2312	broad.mit.edu	37	1	152285758	152285758	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152285758G>A	uc001ezu.1	-	3	1640	c.1604C>T	c.(1603-1605)TCG>TTG	p.S535L	uc001ezv.2_5'Flank	NM_002016	NP_002007	P20930	FILA_HUMAN	filaggrin	535	Ser-rich.				keratinocyte differentiation	cytoplasmic membrane-bounded vesicle|intermediate filament	calcium ion binding|structural molecule activity			ovary(9)|skin(4)|upper_aerodigestive_tract(3)	16	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			CCTATTTACCGATTGCTCGTG	0.587									Ichthyosis				75	242					0	0	0.014410	0	0
FLG2	388698	broad.mit.edu	37	1	152329471	152329471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152329471C>T	uc001ezw.3	-	3	864	c.791G>A	c.(790-792)GGG>GAG	p.G264E	uc001ezv.2_Intron	NM_001014342	NP_001014364	Q5D862	FILA2_HUMAN	filaggrin family member 2	264	Ser-rich.|Filaggrin 1.						calcium ion binding|structural molecule activity			ovary(10)|skin(5)|upper_aerodigestive_tract(1)|breast(1)	17	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ACAGCTAGACCCAAGCTTTTG	0.458													22	76					0	0	0.010504	0	0
SPRR3	6707	broad.mit.edu	37	1	152975896	152975896	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:152975896C>T	uc001fax.3	+	3	550	c.400C>T	c.(400-402)CCT>TCT	p.P134S	SPRR3_uc001faz.3_Missense_Mutation_p.P134S|SPRR3_uc001fay.2_Missense_Mutation_p.P126S	NM_005416	NP_005407	Q9UBC9	SPRR3_HUMAN	small proline-rich protein 3	134	12.|14 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking|wound healing	cytoplasm	protein binding|structural molecule activity			skin(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CATCAAAGTTCCTGAGCAAGG	0.552													5	18					0	0	0.001168	0	0
SPRR1B	6699	broad.mit.edu	37	1	153004923	153004923	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:153004923C>T	uc001fba.2	+	2	166	c.102C>T	c.(100-102)ATC>ATT	p.I34I	SPRR1B_uc009wnx.1_RNA	NM_003125	NP_003116	P22528	SPR1B_HUMAN	small proline-rich protein 1B	34	1.|6 X 8 AA approximate tandem repeats.				keratinization|peptide cross-linking	cornified envelope|cytoplasm	protein binding, bridging|structural molecule activity			ovary(1)	1	Lung NSC(65;1.49e-28)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			AACCATGCATCCCCAAAACCA	0.637													18	101					0	0	0.012319	0	0
PGLYRP3	114771	broad.mit.edu	37	1	153270486	153270486	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:153270486G>A	uc001fbn.1	-	7	1025	c.972C>T	c.(970-972)TCC>TCT	p.S324S		NM_052891	NP_443123	Q96LB9	PGRP3_HUMAN	peptidoglycan recognition protein 3 precursor	324					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(2)|pancreas(1)|skin(1)	4	all_lung(78;3.35e-32)|Lung NSC(65;1.22e-30)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.171)			CCTGCCCAGGGGACAGGATGT	0.592													61	162					0	0	0.014410	0	0
NUP210L	91181	broad.mit.edu	37	1	154031059	154031059	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:154031059C>T	uc001fdw.2	-	21	3033	c.2961G>A	c.(2959-2961)GAG>GAA	p.E987E	NUP210L_uc009woq.2_Intron|NUP210L_uc010peh.1_Silent_p.E987E	NM_207308	NP_997191	Q5VU65	P210L_HUMAN	nucleoporin 210kDa-like isoform 1	987						integral to membrane				skin(5)|ovary(4)|large_intestine(1)|central_nervous_system(1)	11	all_lung(78;9.35e-31)|Lung NSC(65;1.33e-28)|Hepatocellular(266;0.0877)|Melanoma(130;0.128)		LUSC - Lung squamous cell carcinoma(543;0.151)|Colorectal(543;0.198)			TCAGATCAAGCTCCAGCTCTT	0.418													8	45					0	0	0.006214	0	0
KCNN3	3782	broad.mit.edu	37	1	154687452	154687452	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:154687452G>A	uc001ffp.2	-	6	2043	c.1729C>T	c.(1729-1731)CGG>TGG	p.R577W	KCNN3_uc001ffo.2_Missense_Mutation_p.R272W	NM_002249	NP_002240	Q9UGI6	KCNN3_HUMAN	small conductance calcium-activated potassium	582	Calmodulin-binding (By similarity).					integral to membrane	calmodulin binding			lung(1)	1	all_lung(78;2.29e-27)|all_hematologic(923;0.088)|Hepatocellular(266;0.108)|all_neural(408;0.245)		BRCA - Breast invasive adenocarcinoma(34;0.00819)			CATGTTTCCCGAAGGACATTG	0.403													27	67					0	0	0.006320	0	0
PKLR	5313	broad.mit.edu	37	1	155264143	155264143	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:155264143G>A	uc001fkb.3	-	7	1038	c.999C>T	c.(997-999)ATC>ATT	p.I333I	RAG1AP1_uc010pey.1_Intron|PKLR_uc001fka.3_Silent_p.I302I	NM_000298	NP_000289	P30613	KPYR_HUMAN	pyruvate kinase, liver and RBC isoform 1	333					endocrine pancreas development|energy reserve metabolic process|glycolysis|positive regulation of cellular metabolic process	cytosol	ATP binding|magnesium ion binding|potassium ion binding|pyruvate kinase activity			skin(4)|ovary(1)	5	all_lung(78;6.99e-23)|Hepatocellular(266;0.0877)|all_hematologic(923;0.145)		Epithelial(20;3.18e-10)|all cancers(21;7.9e-10)|BRCA - Breast invasive adenocarcinoma(34;0.00116)|LUSC - Lung squamous cell carcinoma(543;0.127)		Pyruvic acid(DB00119)	GTGCCACCATGATGCCGTCGC	0.567													6	22					0	0	0.001168	0	0
FCRL5	83416	broad.mit.edu	37	1	157514150	157514150	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:157514150G>A	uc001fqu.2	-	5	904	c.746C>T	c.(745-747)GCC>GTC	p.A249V	FCRL5_uc009wsm.2_Missense_Mutation_p.A249V|FCRL5_uc010phv.1_Missense_Mutation_p.A249V|FCRL5_uc010phw.1_Missense_Mutation_p.A164V|FCRL5_uc001fqv.1_Missense_Mutation_p.A249V|FCRL5_uc010phx.1_5'UTR	NM_031281	NP_112571	Q96RD9	FCRL5_HUMAN	Fc receptor-like 5	249	Extracellular (Potential).|Ig-like C2-type 2.					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(2)|central_nervous_system(1)	6	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.231)				ACTCCACATGGCAGTAATCTG	0.517													27	173					0	0	0.005443	0	0
FCRL1	115350	broad.mit.edu	37	1	157773774	157773774	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:157773774G>A	uc001frg.2	-	3	293	c.180C>T	c.(178-180)GCC>GCT	p.A60A	FCRL1_uc001frf.2_5'Flank|FCRL1_uc001frh.2_Silent_p.A60A|FCRL1_uc001fri.2_Silent_p.A60A|FCRL1_uc001frj.2_RNA	NM_052938	NP_443170	Q96LA6	FCRL1_HUMAN	Fc receptor-like 1 isoform 1 precursor	60	Extracellular (Potential).|Ig-like C2-type 1.					integral to membrane|plasma membrane	receptor activity	p.A60A(1)		skin(4)|ovary(3)	7	all_hematologic(112;0.0378)		LUSC - Lung squamous cell carcinoma(543;0.24)			CTGGGCCCAAGGCCCGGGTGT	0.577													25	85					0	0	0.004656	0	0
OR10T2	128360	broad.mit.edu	37	1	158369054	158369054	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:158369054G>A	uc010pih.1	-	1	203	c.203C>T	c.(202-204)TCA>TTA	p.S68L		NM_001004475	NP_001004475	Q8NGX3	O10T2_HUMAN	olfactory receptor, family 10, subfamily T,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	all_hematologic(112;0.0378)					CTCAGAAAATGAAAGGATGAA	0.502													4	21					0	0	0.009096	0	0
OR10K2	391107	broad.mit.edu	37	1	158390454	158390454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:158390454C>T	uc010pii.1	-	1	203	c.203G>A	c.(202-204)TGC>TAC	p.C68Y		NM_001004476	NP_001004476	Q6IF99	O10K2_HUMAN	olfactory receptor, family 10, subfamily K,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1	all_hematologic(112;0.0378)					AATCTCAGAGCAAGAGAGGAT	0.488													8	125					0	0	0.003080	0	0
OR10J5	127385	broad.mit.edu	37	1	159505536	159505536	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:159505536G>A	uc010piw.1	-	1	262	c.262C>T	c.(262-264)CAT>TAT	p.H88Y		NM_001004469	NP_001004469	Q8NHC4	O10J5_HUMAN	olfactory receptor, family 10, subfamily J,	88	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_hematologic(112;0.0429)					GGTTGGTTATGAAAAATGAGG	0.438													8	52					0	0	0.008291	0	0
LY9	4063	broad.mit.edu	37	1	160786540	160786540	+	Nonsense_Mutation	SNP	C	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:160786540C>G	uc001fwu.2	+	5	1279	c.1229C>G	c.(1228-1230)TCA>TGA	p.S410*	LY9_uc001fwv.2_Nonsense_Mutation_p.S410*|LY9_uc001fww.2_Intron|LY9_uc001fwx.2_Intron|LY9_uc001fwy.1_Intron|LY9_uc001fwz.2_Nonsense_Mutation_p.S62*	NM_002348	NP_002339	Q9HBG7	LY9_HUMAN	lymphocyte antigen 9 isoform a	410	Extracellular (Potential).|Ig-like C2-type 2.				cell adhesion|immunoglobulin mediated immune response	integral to membrane				ovary(1)	1	all_cancers(52;2.72e-17)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00737)			CAAGGGGAATCACACCTCAAT	0.547													10	48					0	0	0.008291	0	0
NR1I3	9970	broad.mit.edu	37	1	161201215	161201215	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:161201215C>T	uc001fzx.2	-	6	801	c.598G>A	c.(598-600)GAA>AAA	p.E200K	TOMM40L_uc009wuf.1_Intron|NR1I3_uc001fzf.2_Missense_Mutation_p.E200K|NR1I3_uc001fzg.2_Missense_Mutation_p.E171K|NR1I3_uc001fzh.2_Missense_Mutation_p.E171K|NR1I3_uc001fzi.2_Missense_Mutation_p.E171K|NR1I3_uc001fzj.2_Missense_Mutation_p.E171K|NR1I3_uc001fzk.2_Missense_Mutation_p.E171K|NR1I3_uc001fzl.2_Missense_Mutation_p.E171K|NR1I3_uc001fzm.2_Missense_Mutation_p.E125K|NR1I3_uc001fzn.2_Missense_Mutation_p.E33K|NR1I3_uc009wug.2_Missense_Mutation_p.E33K|NR1I3_uc001fzp.2_Missense_Mutation_p.E200K|NR1I3_uc001fzo.2_Missense_Mutation_p.E33K|NR1I3_uc001fzq.2_Nonsense_Mutation_p.W96*|NR1I3_uc001fzr.2_Nonsense_Mutation_p.W96*|NR1I3_uc001fzs.2_Missense_Mutation_p.E33K|NR1I3_uc001fzt.2_Missense_Mutation_p.E33K|NR1I3_uc001fzu.2_Nonsense_Mutation_p.W67*|NR1I3_uc001fzv.2_Nonsense_Mutation_p.W67*|NR1I3_uc001fzw.2_Missense_Mutation_p.E200K|NR1I3_uc001fzy.2_Missense_Mutation_p.E200K|NR1I3_uc001fzz.2_Missense_Mutation_p.E200K|NR1I3_uc001gaa.2_Missense_Mutation_p.E200K|NR1I3_uc001gab.2_Missense_Mutation_p.E200K|NR1I3_uc001gac.2_Missense_Mutation_p.E171K|NR1I3_uc010pkm.1_Missense_Mutation_p.E171K|NR1I3_uc010pkn.1_Missense_Mutation_p.E200K	NM_001077480	NP_001070948	Q14994	NR1I3_HUMAN	constitutive androstane receptor isoform 2	200					regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	nucleoplasm	androgen receptor activity|protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|thyroid hormone receptor activity|transcription coactivator activity|zinc ion binding			ovary(1)|skin(1)	2	all_cancers(52;1.86e-18)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.00376)			TGACAGATTTCCACAGCTGCT	0.443													21	59					0	0	0.003954	0	0
HSPA7	3311	broad.mit.edu	37	1	161576440	161576440	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:161576440G>A	uc010pkp.1	+	1	592	c.360G>A	c.(358-360)GAG>GAA	p.E120E		NR_024151				RecName: Full=Putative heat shock 70 kDa protein 7; AltName: Full=Heat shock 70 kDa protein B;												0						ACCCCGAGGAGATCTCGTCCA	0.622													12	28					0	0	0.013537	0	0
MGST3	4259	broad.mit.edu	37	1	165623542	165623542	+	Silent	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:165623542C>A	uc001gdf.2	+	5	364	c.276C>A	c.(274-276)GCC>GCA	p.A92A	MGST3_uc001gdg.2_Silent_p.A106A	NM_004528	NP_004519	O14880	MGST3_HUMAN	microsomal glutathione S-transferase 3	92					leukotriene biosynthetic process|leukotriene production involved in inflammatory response|signal transduction|xenobiotic metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glutathione peroxidase activity|glutathione transferase activity				0	all_hematologic(923;0.0773)|Acute lymphoblastic leukemia(8;0.155)				Glutathione(DB00143)	TGGGCTTGGCCTGGATTGTTG	0.368													41	129					1.00001e-27	1.08361e-27	0.009718	1	0
FMO3	2328	broad.mit.edu	37	1	171080000	171080000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:171080000C>T	uc001ghi.2	+	6	800	c.689C>T	c.(688-690)CCT>CTT	p.P230L	FMO3_uc001ghh.2_Missense_Mutation_p.P230L|FMO3_uc010pmb.1_Missense_Mutation_p.P210L|FMO3_uc010pmc.1_Missense_Mutation_p.P167L	NM_001002294	NP_001002294	P31513	FMO3_HUMAN	flavin containing monooxygenase 3	230					xenobiotic metabolic process	integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					AATGGTTATCCTTGGGACATG	0.463													19	126					0	0	0.012319	0	0
FMO1	2326	broad.mit.edu	37	1	171251361	171251361	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:171251361C>T	uc009wvz.2	+	7	1208	c.1072C>T	c.(1072-1074)CCT>TCT	p.P358S	FMO1_uc010pme.1_Missense_Mutation_p.P295S|FMO1_uc001ghl.2_Missense_Mutation_p.P358S|FMO1_uc001ghm.2_Missense_Mutation_p.P358S|FMO1_uc001ghn.2_Missense_Mutation_p.P358S	NM_002021	NP_002012	Q01740	FMO1_HUMAN	flavin containing monooxygenase 1	358					NADPH oxidation|organic acid metabolic process|toxin metabolic process|xenobiotic metabolic process	endoplasmic reticulum lumen|integral to membrane|intrinsic to endoplasmic reticulum membrane|microsome	flavin adenine dinucleotide binding|flavin-containing monooxygenase activity|NADP binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GTATATCTTCCCTGCACATCT	0.488													8	68					0	0	0.003080	0	0
ANKRD45	339416	broad.mit.edu	37	1	173628333	173628333	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:173628333G>A	uc001gja.1	-	2	286	c.225C>T	c.(223-225)ATC>ATT	p.I75I	ANKRD45_uc001gjb.3_Silent_p.I75I	NM_198493	NP_940895	Q5TZF3	ANR45_HUMAN	ankyrin repeat domain 45	91											0						TTCTCCCAACGATGTCTTCTT	0.443													27	55					0	0	0.004656	0	0
TNN	63923	broad.mit.edu	37	1	175105027	175105027	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:175105027G>A	uc001gkl.1	+	16	3490	c.3377G>A	c.(3376-3378)TGG>TAG	p.W1126*		NM_022093	NP_071376	Q9UQP3	TENN_HUMAN	tenascin N precursor	1126	Fibrinogen C-terminal.				cell growth|cell migration|signal transduction	extracellular space|proteinaceous extracellular matrix				large_intestine(5)|ovary(3)|central_nervous_system(1)	9		Breast(1374;0.000962)		KIRC - Kidney renal clear cell carcinoma(1967;0.00198)		TTCAAGCGATGGAGGAGCTAT	0.537													13	81					0	0	0.002450	0	0
PAPPA2	60676	broad.mit.edu	37	1	176679284	176679284	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:176679284C>T	uc001gkz.2	+	11	4787	c.3623C>T	c.(3622-3624)TCC>TTC	p.S1208F	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1208					cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						TGTCCTGTTTCCTTGGTAACT	0.463													15	85					0	0	0.003163	0	0
PAPPA2	60676	broad.mit.edu	37	1	176760600	176760600	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:176760600G>A	uc001gkz.2	+	19	6166	c.5002G>A	c.(5002-5004)GAA>AAA	p.E1668K	PAPPA2_uc009www.2_RNA	NM_020318	NP_064714	Q9BXP8	PAPP2_HUMAN	pappalysin 2 isoform 1	1668	Sushi 5.				cell differentiation|proteolysis|regulation of cell growth	extracellular region|intracellular|membrane	metalloendopeptidase activity|zinc ion binding			ovary(7)|central_nervous_system(5)|skin(2)|lung(1)|breast(1)	16						GTACAAATGTGAACAAGGATA	0.388													5	29					0	0	0.000602	0	0
ASTN1	460	broad.mit.edu	37	1	176852015	176852015	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:176852015C>T	uc001glc.2	-	20	3554	c.3342G>A	c.(3340-3342)CTG>CTA	p.L1114L	ASTN1_uc001glb.1_Silent_p.L1114L|ASTN1_uc001gld.1_Silent_p.L1114L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1122	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TGTCAGGTTCCAGGCATCGTA	0.493													5	52					0	0	0.001168	0	0
TDRD5	163589	broad.mit.edu	37	1	179638490	179638490	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:179638490C>T	uc001gnf.1	+	16	2899	c.2649C>T	c.(2647-2649)CCC>CCT	p.P883P	TDRD5_uc010pnp.1_Silent_p.P937P|TDRD5_uc001gnh.1_Silent_p.P438P	NM_173533	NP_775804	Q8NAT2	TDRD5_HUMAN	tudor domain containing 5	883					DNA methylation involved in gamete generation|P granule organization|spermatid development	chromatoid body|pi-body	nucleic acid binding			ovary(2)|skin(2)|central_nervous_system(1)	5						CAGCAGCACCCTGTTCAACAA	0.493													7	92					0	0	0.003080	0	0
QSOX1	5768	broad.mit.edu	37	1	180165587	180165588	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:180165587_180165588GG>AA	uc001gnz.2	+	12	1734_1735	c.1659_1660GG>AA	c.(1657-1662)AGGGAT>AGAAAT	p.D554N	QSOX1_uc001gny.2_Missense_Mutation_p.D554N|QSOX1_uc001goa.2_Missense_Mutation_p.D554N|QSOX1_uc001goc.2_Missense_Mutation_p.D96N|FLJ23867_uc001god.3_5'Flank	NM_002826	NP_002817	O00391	QSOX1_HUMAN	quiescin Q6 sulfhydryl oxidase 1 isoform a	554					cell redox homeostasis|protein thiol-disulfide exchange	extracellular space|integral to Golgi membrane	flavin-linked sulfhydryl oxidase activity			ovary(1)|central_nervous_system(1)	2						CTGCCCGGAGGGATGTGCAGAA	0.609													14	100					0	0	0.004672	0	0
CACNA1E	777	broad.mit.edu	37	1	181620515	181620515	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:181620515C>T	uc001gow.2	+	7	1158	c.993C>T	c.(991-993)TTC>TTT	p.F331F	CACNA1E_uc009wxr.2_Silent_p.F238F|CACNA1E_uc009wxs.2_Silent_p.F238F	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	331	I.|Helical; Name=S6 of repeat I.				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						GGCTGTACTTCATCCCCCTCA	0.428													5	78					0	0	0.001984	0	0
HMCN1	83872	broad.mit.edu	37	1	185986189	185986189	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:185986189C>T	uc001grq.1	+	33	5515	c.5286C>T	c.(5284-5286)CCC>CCT	p.P1762P		NM_031935	NP_114141	Q96RW7	HMCN1_HUMAN	hemicentin 1 precursor	1762	Ig-like C2-type 15.				response to stimulus|visual perception	basement membrane	calcium ion binding			ovary(22)|skin(1)	23						CAGGCTCTCCCCCACCAACTA	0.393													7	56					0	0	0.001984	0	0
TPR	7175	broad.mit.edu	37	1	186304568	186304568	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:186304568G>A	uc001grv.2	-	34	5110	c.4813C>T	c.(4813-4815)CAA>TAA	p.Q1605*		NM_003292	NP_003283	P12270	TPR_HUMAN	nuclear pore complex-associated protein TPR	1605	Potential.				carbohydrate metabolic process|glucose transport|mitotic cell cycle spindle assembly checkpoint|mRNA transport|protein import into nucleus|regulation of glucose transport|seryl-tRNA aminoacylation|transmembrane transport|viral reproduction	condensed chromosome kinetochore|cytoplasm|nuclear membrane|nuclear pore|nucleoplasm	ATP binding|protein binding|serine-tRNA ligase activity			ovary(2)|lung(2)|urinary_tract(1)|central_nervous_system(1)|skin(1)	7		Breast(1374;0.000659)|Lung SC(1967;0.0262)|Prostate(1639;0.157)		Colorectal(1306;1.12e-05)|KIRC - Kidney renal clear cell carcinoma(1967;0.00553)		CCTTCATATTGGGACTTTAGC	0.423			T	NTRK1	papillary thyroid								16	78					0	0	0.006122	0	0
KCNT2	343450	broad.mit.edu	37	1	196227408	196227408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:196227408G>A	uc001gtd.1	-	26	3187	c.3127C>T	c.(3127-3129)CTC>TTC	p.L1043F	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Missense_Mutation_p.L976F|KCNT2_uc001gtf.1_Missense_Mutation_p.L1019F|KCNT2_uc001gtg.1_RNA|KCNT2_uc001gth.1_Missense_Mutation_p.L547F	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	1043	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						CTCCTGTAGAGGTTCAGTCGC	0.443													19	45					0	0	0.006122	0	0
KCNT2	343450	broad.mit.edu	37	1	196295997	196295997	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:196295997T>C	uc001gtd.1	-	19	2186	c.2126A>G	c.(2125-2127)GAG>GGG	p.E709G	KCNT2_uc009wyt.1_Intron|KCNT2_uc001gte.1_Missense_Mutation_p.E659G|KCNT2_uc001gtf.1_Missense_Mutation_p.E709G|KCNT2_uc001gtg.1_RNA|KCNT2_uc009wyu.2_Missense_Mutation_p.E709G|KCNT2_uc001gth.1_Missense_Mutation_p.E230G	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	709	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						TTTTGCATCCTCATAGTAGTT	0.318													3	89					0	0	0.009096	0	0
KCNT2	343450	broad.mit.edu	37	1	196395070	196395070	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:196395070G>A	uc001gtd.1	-	11	1093	c.1033C>T	c.(1033-1035)CGA>TGA	p.R345*	KCNT2_uc009wyt.1_RNA|KCNT2_uc001gte.1_Nonsense_Mutation_p.R345*|KCNT2_uc001gtf.1_Nonsense_Mutation_p.R345*|KCNT2_uc001gtg.1_Intron|KCNT2_uc009wyu.2_Nonsense_Mutation_p.R345*|KCNT2_uc009wyv.1_Nonsense_Mutation_p.R320*	NM_198503	NP_940905	Q6UVM3	KCNT2_HUMAN	potassium channel, subfamily T, member 2	345	Cytoplasmic (Potential).					voltage-gated potassium channel complex	ATP binding|calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(5)|breast(1)|skin(1)	7						AGTACCCTTCGAACCTGTACA	0.383													9	27					0	0	0.008291	0	0
CRB1	23418	broad.mit.edu	37	1	197313472	197313472	+	Silent	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:197313472T>G	uc001gtz.2	+	3	849	c.714T>G	c.(712-714)ACT>ACG	p.T238T	CRB1_uc010poz.1_Silent_p.T169T|CRB1_uc001gty.1_Silent_p.T238T|CRB1_uc010ppa.1_RNA|CRB1_uc009wza.2_Intron|CRB1_uc010ppb.1_Silent_p.T238T|CRB1_uc010ppc.1_RNA	NM_201253	NP_957705	P82279	CRUM1_HUMAN	crumbs homolog 1 precursor	238	EGF-like 6; calcium-binding (Potential).|Extracellular (Potential).				cell-cell signaling|establishment or maintenance of cell polarity	apical plasma membrane|extracellular region|integral to membrane	calcium ion binding|protein binding			ovary(5)|skin(3)|large_intestine(1)	9						ATGGTGCAACTTGTCAGGATG	0.448													23	136					0	0	0.003954	0	0
ADORA1	134	broad.mit.edu	37	1	203134932	203134932	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:203134932C>T	uc001gze.1	+	4	1318	c.885C>T	c.(883-885)TTC>TTT	p.F295F	FMOD_uc010pqi.1_Intron|ADORA1_uc001gzf.1_Silent_p.F295F|ADORA1_uc010pqg.1_Silent_p.F227F|ADORA1_uc009xak.1_Missense_Mutation_p.P221S|ADORA1_uc010pqh.1_Silent_p.F328F	NM_000674	NP_000665	P30542	AA1R_HUMAN	adenosine A1 receptor	295	Cytoplasmic (Potential).				induction of apoptosis by extracellular signals|inflammatory response|nervous system development|phagocytosis	integral to plasma membrane				large_intestine(1)	1					Aminophylline(DB01223)|Caffeine(DB00201)|Defibrotide(DB04932)|Gabapentin(DB00996)|Imipramine(DB00458)|Pegademase bovine(DB00061)|Theophylline(DB00277)	TCCAGAAGTTCCGCGTCACCT	0.552													7	40					0	0	0.001984	0	0
PIK3C2B	5287	broad.mit.edu	37	1	204396825	204396825	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:204396825G>A	uc001haw.2	-	32	5017	c.4538C>T	c.(4537-4539)TCC>TTC	p.S1513F	PIK3C2B_uc010pqv.1_Missense_Mutation_p.S1485F	NM_002646	NP_002637	O00750	P3C2B_HUMAN	phosphoinositide-3-kinase, class 2 beta	1513					cell communication|phosphatidylinositol-mediated signaling	endoplasmic reticulum|microsome|nucleus|phosphatidylinositol 3-kinase complex|plasma membrane	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol binding|phosphatidylinositol-4-phosphate 3-kinase activity|protein binding			lung(2)|breast(2)|stomach(1)|prostate(1)|central_nervous_system(1)	7	all_cancers(21;0.00347)|all_neural(3;0.0218)|Glioma(3;0.0382)|all_epithelial(62;0.171)|Breast(84;0.179)|Prostate(682;0.227)		GBM - Glioblastoma multiforme(2;2.69e-45)|all cancers(3;1.66e-30)|KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)|Epithelial(59;0.193)			GTTTTTGTAGGAGATGGACAG	0.483													35	110					0	0	0.006999	0	0
LRRN2	10446	broad.mit.edu	37	1	204588034	204588034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:204588034C>T	uc001hbe.1	-	3	1475	c.1087G>A	c.(1087-1089)GAG>AAG	p.E363K	MDM4_uc001hbd.1_Intron|LRRN2_uc001hbf.1_Missense_Mutation_p.E363K|LRRN2_uc009xbf.1_Missense_Mutation_p.E363K|MDM4_uc001hbc.2_Intron	NM_006338	NP_006329	O75325	LRRN2_HUMAN	leucine rich repeat neuronal 2 precursor	363	Extracellular (Potential).				cell adhesion	integral to membrane	receptor activity			central_nervous_system(2)	2	all_cancers(21;0.0519)|Breast(84;0.112)|Prostate(682;0.19)		KIRC - Kidney renal clear cell carcinoma(13;0.0584)|Kidney(21;0.0934)|BRCA - Breast invasive adenocarcinoma(75;0.143)			AGACCTACCTCCTGCAGGTTG	0.632													5	55					0	0	0.000602	0	0
DSTYK	25778	broad.mit.edu	37	1	205138441	205138441	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:205138441C>A	uc001hbw.2	-	3	1238	c.1174G>T	c.(1174-1176)GAA>TAA	p.E392*	DSTYK_uc001hbx.2_Nonsense_Mutation_p.E392*|DSTYK_uc001hby.1_Intron	NM_015375	NP_056190	Q6XUX3	DUSTY_HUMAN	receptor interacting protein kinase 5 isoform 1	392						cytoplasm	ATP binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			lung(1)	1						CGAGTATATTCCAGACGTTTG	0.443													8	43					7.48243e-07	8.05552e-07	0.006214	1	0
PTPN14	5784	broad.mit.edu	37	1	214557398	214557398	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:214557398C>T	uc001hkk.1	-	13	2071	c.1800G>A	c.(1798-1800)CGG>CGA	p.R600R	PTPN14_uc010pty.1_Silent_p.R501R	NM_005401	NP_005392	Q15678	PTN14_HUMAN	protein tyrosine phosphatase, non-receptor type	600					lymphangiogenesis	cytoplasm|cytoskeleton	protein tyrosine phosphatase activity|receptor tyrosine kinase binding			breast(2)|ovary(1)|kidney(1)|skin(1)	5				OV - Ovarian serous cystadenocarcinoma(81;0.00181)|all cancers(67;0.00194)|Epithelial(68;0.0157)|GBM - Glioblastoma multiforme(131;0.155)		GCTGCACCTTCCGGGTCACCA	0.672													9	41					0	0	0.004482	0	0
MARK1	4139	broad.mit.edu	37	1	220792035	220792035	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:220792035G>A	uc001hmn.3	+	9	1444	c.847G>A	c.(847-849)GAC>AAC	p.D283N	MARK1_uc009xdw.2_Missense_Mutation_p.D283N|MARK1_uc010pun.1_Missense_Mutation_p.D283N|MARK1_uc001hmm.3_Missense_Mutation_p.D261N	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	283	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		TATGTCCACAGACTGTGAAAA	0.338													11	48					0	0	0.010729	0	0
PCNXL2	80003	broad.mit.edu	37	1	233231501	233231501	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:233231501G>A	uc001hvl.2	-	22	4181	c.3946C>T	c.(3946-3948)CAT>TAT	p.H1316Y	PCNXL2_uc001hvm.1_RNA|PCNXL2_uc009xfu.2_Intron|PCNXL2_uc001hvp.1_RNA|PCNXL2_uc009xfv.1_RNA	NM_014801	NP_055616	A6NKB5	PCX2_HUMAN	pecanex-like 2	1316	Helical; (Potential).					integral to membrane				central_nervous_system(1)|pancreas(1)	2		all_cancers(173;0.0347)|Prostate(94;0.137)				GAAAGGATACGAGGAATGGCA	0.443													4	5					0	0	0.009096	0	0
FMN2	56776	broad.mit.edu	37	1	240370352	240370352	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:240370352C>T	uc010pyd.1	+	5	2465	c.2240C>T	c.(2239-2241)TCC>TTC	p.S747F	FMN2_uc010pye.1_Missense_Mutation_p.S751F	NM_020066	NP_064450	Q9NZ56	FMN2_HUMAN	formin 2	747					actin cytoskeleton organization|establishment of meiotic spindle localization|intracellular signal transduction|meiotic chromosome movement towards spindle pole|meiotic metaphase I|multicellular organismal development|oogenesis|polar body extrusion after meiotic divisions		actin binding			ovary(4)|pancreas(3)|skin(3)|large_intestine(1)|central_nervous_system(1)	12	Ovarian(103;0.127)	all_cancers(173;0.013)	OV - Ovarian serous cystadenocarcinoma(106;0.0106)			ATACAGACTTCCCCCACGGAA	0.572													3	13					0	0	0.004672	0	0
PLD5	200150	broad.mit.edu	37	1	242383350	242383350	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:242383350G>A	uc001hzn.1	-	5	802	c.675C>T	c.(673-675)ATC>ATT	p.I225I	PLD5_uc001hzl.3_Silent_p.I163I|PLD5_uc001hzm.3_Silent_p.I15I|PLD5_uc001hzo.1_Silent_p.I133I			Q8N7P1	PLD5_HUMAN	RecName: Full=Inactive phospholipase D5;          Short=Inactive PLD 5; AltName: Full=Inactive choline phosphatase 5; AltName: Full=Inactive phosphatidylcholine-hydrolyzing phospholipase D5; AltName: Full=PLDc;	225	PLD phosphodiesterase 1.					integral to membrane	catalytic activity			ovary(6)	6	Melanoma(84;0.242)		OV - Ovarian serous cystadenocarcinoma(106;0.0329)			GTTTGTCCACGATCCAGAAGG	0.527													11	40					0	0	0.008291	0	0
OR2C3	81472	broad.mit.edu	37	1	247695611	247695611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:247695611G>A	uc009xgy.2	-	2	565	c.203C>T	c.(202-204)TCC>TTC	p.S68F	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	68	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			GTCCAGGAAGGGGAGGTTGGC	0.507													7	47					0	0	0.003080	0	0
OR2L13	284521	broad.mit.edu	37	1	248262733	248262733	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:248262733C>T	uc001ids.2	+	3	393	c.56C>T	c.(55-57)CCA>CTA	p.P19L		NM_175911	NP_787107	Q8N349	OR2LD_HUMAN	olfactory receptor, family 2, subfamily L,	19	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity|protein binding			central_nervous_system(2)|ovary(1)|skin(1)	4	all_cancers(71;0.000149)|all_epithelial(71;1.27e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0132)			CTGCTTCCCCCAAATCAAACT	0.383													20	81					0	0	0.008871	0	0
OR2M4	26245	broad.mit.edu	37	1	248402762	248402762	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:248402762T>G	uc010pzh.1	+	1	532	c.532T>G	c.(532-534)TTC>GTC	p.F178V		NM_017504	NP_059974	Q96R27	OR2M4_HUMAN	olfactory receptor, family 2, subfamily M,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(2)	2	all_cancers(71;0.000124)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0245)			TCATCACTTTTTCTGTGATGT	0.433													12	99					0	0	0.002450	0	0
OR2T12	127064	broad.mit.edu	37	1	248458608	248458608	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:248458608G>A	uc010pzj.1	-	1	273	c.273C>T	c.(271-273)TCC>TCT	p.S91S		NM_001004692	NP_001004692	Q8NG77	O2T12_HUMAN	olfactory receptor, family 2, subfamily T,	91	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0201)			AGCCAGCGCGGGAGATGGCCT	0.562													9	89					0	0	0.010729	0	0
OR2T2	401992	broad.mit.edu	37	1	248616379	248616379	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:248616379C>T	uc001iek.1	+	1	281	c.281C>T	c.(280-282)TCC>TTC	p.S94F		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	94	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			AAGACCATTTCCTTCCTGGGC	0.522													15	339					0	0	0.004990	0	0
OR2T11	127077	broad.mit.edu	37	1	248790161	248790161	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:248790161G>A	uc001ier.1	-	1	269	c.269C>T	c.(268-270)TCC>TTC	p.S90F		NM_001001964	NP_001001964	Q8NH01	O2T11_HUMAN	olfactory receptor, family 2, subfamily T,	90	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			lung(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			GGCCACAAAGGAAATGATCTT	0.493													9	53					0	0	0.004482	0	0
SH3BP5L	80851	broad.mit.edu	37	1	249119076	249119076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:249119076G>A	uc001iew.1	-	2	611	c.59C>T	c.(58-60)CCT>CTT	p.P20L	SH3BP5L_uc001iev.1_5'UTR|hsa-mir-3124|MI0014140_5'Flank	NM_030645	NP_085148	Q7L8J4	3BP5L_HUMAN	SH3-binding domain protein 5-like	20											0	all_cancers(71;3.33e-06)|all_epithelial(71;2.41e-06)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.0458)|Lung NSC(105;0.0494)|Melanoma(84;0.199)	all_cancers(173;0.19)	OV - Ovarian serous cystadenocarcinoma(106;0.00805)			TACAACTTCAGGCCGCAGCTC	0.612													25	66					0	0	0.005443	0	0
ADARB2	105	broad.mit.edu	37	10	1313244	1313244	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:1313244G>A	uc009xhq.2	-	4	1472	c.1098C>T	c.(1096-1098)TCC>TCT	p.S366S		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	366					mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		TGACCAGCTGGGATATGGAGT	0.602													11	13					0	0	0.008291	0	0
ARHGAP21	57584	broad.mit.edu	37	10	24908778	24908778	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:24908778G>A	uc001isb.2	-	9	2533	c.2046C>T	c.(2044-2046)TCC>TCT	p.S682S	ARHGAP21_uc010qdb.1_RNA|ARHGAP21_uc009xkl.1_Silent_p.S682S|ARHGAP21_uc010qdc.1_Silent_p.S517S|ARHGAP21_uc001isc.1_Silent_p.S672S	NM_020824	NP_065875	Q5T5U3	RHG21_HUMAN	Rho GTPase activating protein 21	681					signal transduction	cell junction|cytoplasmic vesicle membrane|cytoskeleton|Golgi membrane	GTPase activator activity|protein binding			ovary(7)|pancreas(1)	8						ATAAAGAGGGGGATTTCCCAG	0.483													13	26					0	0	0.001855	0	0
ABI1	10006	broad.mit.edu	37	10	27149684	27149684	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:27149684A>G	uc001isx.2	-	1	276	c.109T>C	c.(109-111)TAC>CAC	p.Y37H	ABI1_uc001ite.2_Missense_Mutation_p.Y37H|ABI1_uc010qdh.1_Missense_Mutation_p.Y37H|ABI1_uc010qdi.1_Missense_Mutation_p.Y37H|ABI1_uc001isy.2_Missense_Mutation_p.Y37H|ABI1_uc001ita.2_Missense_Mutation_p.Y37H|ABI1_uc001isz.2_Missense_Mutation_p.Y37H|ABI1_uc001itb.2_Missense_Mutation_p.Y37H|ABI1_uc001itc.2_Missense_Mutation_p.Y37H|ABI1_uc010qdj.1_Missense_Mutation_p.Y37H|ABI1_uc001itd.2_Missense_Mutation_p.Y37H|ABI1_uc010qdk.1_Missense_Mutation_p.Y37H	NM_005470	NP_005461	Q8IZP0	ABI1_HUMAN	abl-interactor 1 isoform a	37	Required for binding to WASF1 (By similarity).				actin polymerization or depolymerization|cellular component movement|negative regulation of cell proliferation|peptidyl-tyrosine phosphorylation|transmembrane receptor protein tyrosine kinase signaling pathway	cell junction|cytoskeleton|cytosol|endoplasmic reticulum|filopodium|growth cone|lamellipodium|nucleus|soluble fraction|synapse|synaptosome	cytoskeletal protein binding			central_nervous_system(1)	1						ACCTGTATGTAGTTGTTTTCA	0.642													15	37					0	0	0.006122	0	0
NRP1	8829	broad.mit.edu	37	10	33515168	33515168	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:33515168G>A	uc001iwx.3	-	7	1554	c.1031C>T	c.(1030-1032)GCC>GTC	p.A344V	NRP1_uc001iwv.3_Missense_Mutation_p.A344V|NRP1_uc009xlz.2_Missense_Mutation_p.A344V|NRP1_uc001iww.3_Missense_Mutation_p.A163V|NRP1_uc001iwy.3_Missense_Mutation_p.A344V|NRP1_uc001iwz.2_Missense_Mutation_p.A344V|NRP1_uc001ixa.2_Missense_Mutation_p.A344V|NRP1_uc001ixb.1_Missense_Mutation_p.A344V|NRP1_uc001ixc.1_Missense_Mutation_p.A344V	NM_003873	NP_003864	O14786	NRP1_HUMAN	neuropilin 1 isoform a	344	F5/8 type C 1.|Extracellular (Potential).				axon guidance|cell adhesion|cell-cell signaling|organ morphogenesis|positive regulation of cell proliferation	extracellular region|integral to membrane|plasma membrane	growth factor binding|heparin binding|metal ion binding|vascular endothelial growth factor receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4					Palifermin(DB00039)|Pegaptanib(DB04895)	TTTTGAAATGGCGCCCTGTGT	0.478													13	19					0	0	0.013537	0	0
AGAP4	119016	broad.mit.edu	37	10	46321385	46321385	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:46321385C>T	uc001jcx.3	-	7	2096	c.1970G>A	c.(1969-1971)GGC>GAC	p.G657D	AGAP4_uc010qfl.1_Missense_Mutation_p.G680D|AGAP4_uc001jcy.3_Missense_Mutation_p.G572D|uc010qfm.1_5'Flank	NM_133446	NP_597703	Q96P64	AGAP4_HUMAN	ArfGAP with GTPase domain, ankyrin repeat and PH	657	ANK 2.				regulation of ARF GTPase activity		ARF GTPase activator activity|zinc ion binding			ovary(1)	1						GTCGGGGCAGCCGTACTGCAG	0.522													19	125					0	0	0.004656	0	0
DRGX	644168	broad.mit.edu	37	10	50594752	50594752	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:50594752C>T	uc010qgq.1	-	4	402	c.402G>A	c.(400-402)AAG>AAA	p.K134K		NM_001080520	NP_001073989	A6NNA5	DRGX_HUMAN	dorsal root ganglia homeobox	134					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0						GCGCCTCCTTCTTACTCCGGG	0.642													5	31					0	0	0.003080	0	0
PRKG1	5592	broad.mit.edu	37	10	54042050	54042050	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:54042050C>T	uc001jjm.2	+	14	1832	c.1638C>T	c.(1636-1638)ATC>ATT	p.I546I	PRKG1_uc001jjo.2_Silent_p.I561I|PRKG1_uc009xow.1_Silent_p.I264I|uc001jjq.1_Intron	NM_001098512	NP_001091982	Q13976	KGP1_HUMAN	protein kinase, cGMP-dependent, type I isoform	546	Protein kinase.				actin cytoskeleton organization|platelet activation|signal transduction	cytosol	ATP binding|cGMP binding|cGMP-dependent protein kinase activity			lung(2)|stomach(1)|ovary(1)|central_nervous_system(1)|skin(1)	6		all_cancers(4;2.13e-08)|all_epithelial(4;2.44e-08)|all_lung(4;0.000173)		all cancers(4;1.18e-05)|GBM - Glioblastoma multiforme(4;0.000359)|Epithelial(53;0.00532)|Lung(62;0.0606)		CACTGGGAATCCTAATGTATG	0.453													7	15					0	0	0.004482	0	0
HERC4	26091	broad.mit.edu	37	10	69751987	69751987	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:69751987G>A	uc001jng.3	-	11	1551	c.1240C>T	c.(1240-1242)CCT>TCT	p.P414S	HERC4_uc009xpq.2_5'UTR|HERC4_uc001jnf.3_RNA|HERC4_uc001jnh.3_Missense_Mutation_p.P414S|HERC4_uc009xpr.2_Missense_Mutation_p.P414S|HERC4_uc001jni.3_Missense_Mutation_p.P158S|HERC4_uc001jnj.2_Missense_Mutation_p.P414S	NM_022079	NP_071362	Q5GLZ8	HERC4_HUMAN	hect domain and RLD 4 isoform a	414					cell differentiation|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|spermatogenesis	cytosol	ubiquitin-protein ligase activity			ovary(1)|breast(1)|skin(1)	3						CTTCCAGAAGGATAGCTCAGC	0.323													11	34					0	0	0.013537	0	0
TET1	80312	broad.mit.edu	37	10	70333230	70333230	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:70333230C>T	uc001jok.3	+	2	1640	c.1135C>T	c.(1135-1137)CCT>TCT	p.P379S		NM_030625	NP_085128	Q8NFU7	TET1_HUMAN	CXXC finger 6	379					DNA demethylation|inner cell mass cell differentiation|negative regulation of methylation-dependent chromatin silencing|stem cell maintenance		iron ion binding|methylcytosine dioxygenase activity|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|structure-specific DNA binding|zinc ion binding			ovary(5)|lung(2)|prostate(1)|breast(1)	9						ATGGGAACTTCCTGGTGCTGA	0.507													14	117					0	0	0.002450	0	0
HK1	3098	broad.mit.edu	37	10	71142522	71142522	+	Silent	SNP	C	T	T	rs61751207		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:71142522C>T	uc001jpl.3	+	10	1646	c.1545C>T	c.(1543-1545)TTC>TTT	p.F515F	HK1_uc001jpg.3_Silent_p.F503F|HK1_uc001jph.3_Silent_p.F519F|HK1_uc001jpi.3_Silent_p.F519F|HK1_uc001jpj.3_Silent_p.F550F|HK1_uc001jpk.3_Silent_p.F514F|HK1_uc009xqd.2_Silent_p.F393F	NM_000188	NP_000179	P19367	HXK1_HUMAN	hexokinase 1 isoform HKI	515	Catalytic.				glucose transport|glycolysis|transmembrane transport	cytosol|mitochondrial outer membrane|nucleus	ATP binding|glucokinase activity			ovary(1)	1						TGCCCTCCTTCGTCCGGAGAA	0.627													4	38					0	0	0.009096	0	0
ADAMTS14	140766	broad.mit.edu	37	10	72498716	72498716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:72498716G>A	uc001jrh.2	+	11	1718	c.1718G>A	c.(1717-1719)CGA>CAA	p.R573Q	ADAMTS14_uc001jrg.2_Missense_Mutation_p.R576Q|ADAMTS14_uc001jri.1_Missense_Mutation_p.R96Q	NM_080722	NP_542453	Q8WXS8	ATS14_HUMAN	ADAM metallopeptidase with thrombospondin type 1	573	TSP type-1 1.				collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|upper_aerodigestive_tract(1)	6						GGCGGGGTGCGATCCCGCAGC	0.657													4	32					0	0	0.000602	0	0
UNC5B	219699	broad.mit.edu	37	10	73048347	73048347	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:73048347G>A	uc001jro.2	+	7	1369	c.924G>A	c.(922-924)TGG>TGA	p.W308*	UNC5B_uc001jrp.2_Nonsense_Mutation_p.W308*	NM_170744	NP_734465	Q8IZJ1	UNC5B_HUMAN	unc-5 homolog B precursor	308	TSP type-1 2.|Extracellular (Potential).				apoptosis|axon guidance|regulation of apoptosis	integral to membrane				ovary(2)|lung(1)	3						GGACGGAGTGGAGCAAGTGGT	0.607													7	68					0	0	0.001984	0	0
TTC18	118491	broad.mit.edu	37	10	75072273	75072273	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:75072273C>T	uc009xrc.2	-	11	1372	c.1251G>A	c.(1249-1251)GTG>GTA	p.V417V	TTC18_uc001jty.2_Silent_p.V417V|TTC18_uc009xrd.1_Silent_p.V225V	NM_145170	NP_660153	Q5T0N1	TTC18_HUMAN	tetratricopeptide repeat domain 18	417							binding			ovary(2)|central_nervous_system(1)	3	Prostate(51;0.0119)					CCTTTTCTTTCACTGGTTTAT	0.383													8	65					0	0	0.006214	0	0
LRIT2	340745	broad.mit.edu	37	10	85981712	85981712	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:85981712C>T	uc001kcy.2	-	3	1625	c.1617G>A	c.(1615-1617)GGG>GGA	p.G539G	LRIT2_uc010qmc.1_Silent_p.G549G	NM_001017924	NP_001017924	A6NDA9	LRIT2_HUMAN	leucine rich repeat containing 22 precursor	539						integral to membrane				ovary(2)	2						TCTCCTTGTCCCCCTCAGTGT	0.582													8	105					0	0	0.006214	0	0
PLCE1	51196	broad.mit.edu	37	10	96018889	96018889	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:96018889G>A	uc001kjk.2	+	13	4430	c.3796G>A	c.(3796-3798)GAT>AAT	p.D1266N	PLCE1_uc010qnx.1_Missense_Mutation_p.D1250N|PLCE1_uc001kjm.2_Missense_Mutation_p.D958N	NM_016341	NP_057425	Q9P212	PLCE1_HUMAN	phospholipase C, epsilon 1 isoform 1	1266					activation of MAPK activity|activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|calcium-mediated signaling|cell proliferation|cytoskeleton organization|diacylglycerol biosynthetic process|elevation of cytosolic calcium ion concentration|epidermal growth factor receptor signaling pathway|glomerulus development|heart development|lipid catabolic process|Ras protein signal transduction|regulation of cell growth|regulation of G-protein coupled receptor protein signaling pathway|regulation of Ras protein signal transduction|regulation of smooth muscle contraction	cytosol|Golgi membrane|membrane fraction|plasma membrane	calcium ion binding|guanyl-nucleotide exchange factor activity|phosphatidylinositol phospholipase C activity|Ras GTPase binding|receptor signaling protein activity			ovary(2)|skin(1)	3		Colorectal(252;0.0458)				AAACACCAGCGATCTTCAGCC	0.468													11	83					0	0	0.013537	0	0
ANKRD2	26287	broad.mit.edu	37	10	99343350	99343350	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:99343350G>A	uc001knw.2	+	9	1160	c.951G>A	c.(949-951)ACG>ACA	p.T317T	DHDPSL_uc001knx.2_5'Flank|DHDPSL_uc001kny.2_5'Flank|DHDPSL_uc001knz.2_5'Flank|PI4K2A_uc010qoy.1_5'Flank|ANKRD2_uc009xvu.2_Silent_p.T284T	NM_020349	NP_065082	Q9GZV1	ANKR2_HUMAN	ankyrin repeat domain 2 isoform a	317					muscle contraction|muscle organ development		structural constituent of muscle				0		all_hematologic(284;1.95e-06)|Colorectal(252;0.0163)		Epithelial(162;1.18e-94)|all cancers(201;9.31e-86)|BRCA - Breast invasive adenocarcinoma(275;0.0233)|STAD - Stomach adenocarcinoma(243;0.181)|KIRC - Kidney renal clear cell carcinoma(50;0.206)|Kidney(138;0.241)		AGACCCCGACGGACCTGGTGC	0.627													3	8					0	0	0.009096	0	0
PYROXD2	84795	broad.mit.edu	37	10	100148244	100148244	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:100148244G>A	uc001kpc.2	-	13	1400	c.1314C>T	c.(1312-1314)ATC>ATT	p.I438I	PYROXD2_uc001kpb.2_Intron|PYROXD2_uc001kpd.2_Intron	NM_032709	NP_116098	Q8N2H3	PYRD2_HUMAN	pyridine nucleotide-disulphide oxidoreductase	438							oxidoreductase activity			central_nervous_system(1)	1						GCGAGGAAGGGATGCAGAGCT	0.622													4	11					0	0	0.009096	0	0
SEC31B	25956	broad.mit.edu	37	10	102262191	102262191	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:102262191C>T	uc001krc.1	-	11	1332	c.1230G>A	c.(1228-1230)CTG>CTA	p.L410L	SEC31B_uc010qpo.1_Silent_p.L409L|SEC31B_uc001krd.1_5'UTR|SEC31B_uc001krf.1_5'UTR|SEC31B_uc001kre.1_5'UTR|SEC31B_uc001krg.1_5'UTR	NM_015490	NP_056305	Q9NQW1	SC31B_HUMAN	SEC31 homolog B	410					protein transport|vesicle-mediated transport	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane				ovary(1)	1		Colorectal(252;0.117)		Epithelial(162;2.36e-10)|all cancers(201;2.09e-08)		GCTGTGGCACCAGATGGGCAG	0.527													6	41					0	0	0.001984	0	0
SEMA4G	57715	broad.mit.edu	37	10	102740344	102740344	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:102740344G>A	uc010qpt.1	+	12	1804	c.1361G>A	c.(1360-1362)TGG>TAG	p.W454*	SEMA4G_uc001krv.2_RNA|SEMA4G_uc001krw.1_Nonsense_Mutation_p.W454*|SEMA4G_uc001krx.2_Nonsense_Mutation_p.W454*|MRPL43_uc001kry.1_Intron|MRPL43_uc010qpu.1_Intron	NM_017893	NP_060363	Q9NTN9	SEM4G_HUMAN	semaphorin 4G	454	Extracellular (Potential).|Sema.				cell differentiation|nervous system development	integral to membrane	receptor activity			breast(1)	1		Colorectal(252;0.234)		Epithelial(162;3.71e-09)|all cancers(201;2.1e-07)		GCTGATGGCTGGATCCACAAG	0.512													8	51					0	0	0.006214	0	0
NFKB2	4791	broad.mit.edu	37	10	104156228	104156228	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:104156228C>T	uc001kvb.2	+	4	391	c.126C>T	c.(124-126)ATC>ATT	p.I42I	NFKB2_uc001kva.2_Silent_p.I42I|NFKB2_uc010qqk.1_Silent_p.I42I|NFKB2_uc001kvd.2_Silent_p.I42I|NFKB2_uc009xxc.2_Silent_p.I42I	NM_001077494	NP_001070962	Q00653	NFKB2_HUMAN	nuclear factor of kappa light polypeptide gene	42	RHD.				innate immune response|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	Bcl3/NF-kappaB2 complex|cytosol|nucleoplasm	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			lung(3)	3		Colorectal(252;0.00957)		Epithelial(162;3.4e-08)|all cancers(201;6.41e-07)		ACCTGGTGATCGTGGAACAGC	0.607			T	IGH@	B-NHL								5	32					0	0	0.000602	0	0
SMC3	9126	broad.mit.edu	37	10	112361499	112361499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:112361499C>T	uc001kze.2	+	24	2875	c.2749C>T	c.(2749-2751)CAT>TAT	p.H917Y		NM_005445	NP_005436	Q9UQE7	SMC3_HUMAN	structural maintenance of chromosomes 3	917					cell division|DNA mediated transformation|DNA repair|meiosis|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic spindle organization|negative regulation of DNA endoreduplication|signal transduction|sister chromatid cohesion	basement membrane|chromatin|chromosome, centromeric region|cytoplasm|meiotic cohesin complex|nuclear matrix|nucleoplasm|spindle pole	ATP binding|dynein binding|microtubule motor activity|protein heterodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(234;0.0848)|Lung NSC(174;0.238)		Epithelial(162;0.00206)|all cancers(201;0.0227)|BRCA - Breast invasive adenocarcinoma(275;0.127)		TGCTATAAATCATGATACTAA	0.368													7	68					0	0	0.006214	0	0
HABP2	3026	broad.mit.edu	37	10	115335736	115335736	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:115335736C>T	uc001lai.3	+	4	407	c.304C>T	c.(304-306)CCT>TCT	p.P102S	HABP2_uc010qrz.1_RNA|HABP2_uc010qry.1_Silent_p.L90L	NM_004132	NP_004123	Q14520	HABP2_HUMAN	hyaluronan binding protein 2 preproprotein	102	EGF-like 1.				cell adhesion|proteolysis	extracellular space	glycosaminoglycan binding|serine-type endopeptidase activity			ovary(2)|skin(1)	3		Colorectal(252;0.0233)|Breast(234;0.0672)		Epithelial(162;0.00319)|all cancers(201;0.0112)		CTGCCTGGCTCCTTTCTCTGG	0.527													12	51					0	0	0.010729	0	0
TDRD1	56165	broad.mit.edu	37	10	115963294	115963294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:115963294G>A	uc001lbg.1	+	8	1102	c.949G>A	c.(949-951)GAA>AAA	p.E317K	TDRD1_uc001lbf.2_Missense_Mutation_p.E308K|TDRD1_uc001lbh.1_Missense_Mutation_p.E308K|TDRD1_uc001lbi.1_Missense_Mutation_p.E308K|TDRD1_uc010qsc.1_Missense_Mutation_p.E26K|TDRD1_uc001lbj.2_Missense_Mutation_p.E26K	NM_198795	NP_942090	Q9BXT4	TDRD1_HUMAN	tudor domain containing 1	317	Tudor 1.				DNA methylation involved in gamete generation|gene silencing by RNA|germ cell development|meiosis|multicellular organismal development|piRNA metabolic process|spermatogenesis	pi-body	nucleic acid binding|protein binding|zinc ion binding				0		Colorectal(252;0.172)|Breast(234;0.188)		Epithelial(162;0.0343)|all cancers(201;0.0754)		TGTTAAGGGGGAAGTTTGTAT	0.348													9	35					0	0	0.008291	0	0
KCNK18	338567	broad.mit.edu	37	10	118969539	118969539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:118969539C>T	uc010qsr.1	+	3	884	c.884C>T	c.(883-885)TCC>TTC	p.S295F		NM_181840	NP_862823	Q7Z418	KCNKI_HUMAN	potassium channel, subfamily K, member 18	295	Helical; (Potential).					integral to membrane|plasma membrane				upper_aerodigestive_tract(1)	1		Colorectal(252;0.19)		all cancers(201;0.0211)		GCCTACATTTCCTGTGCAGCT	0.498													22	76					0	0	0.003330	0	0
INPP5F	22876	broad.mit.edu	37	10	121571402	121571402	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:121571402G>A	uc001leo.2	+	15	1987	c.1821G>A	c.(1819-1821)ATG>ATA	p.M607I		NM_014937	NP_055752	Q9Y2H2	SAC2_HUMAN	inositol polyphosphate-5-phosphatase F	607							phosphoric ester hydrolase activity			ovary(2)	2		Lung NSC(174;0.109)|all_lung(145;0.142)		all cancers(201;0.00205)|BRCA - Breast invasive adenocarcinoma(275;0.158)		AAAGTTACATGAAGTTACTAC	0.453													7	55					0	0	0.006214	0	0
HTRA1	5654	broad.mit.edu	37	10	124248996	124248996	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:124248996G>A	uc001lgj.2	+	3	759	c.631G>A	c.(631-633)GAA>AAA	p.E211K		NM_002775	NP_002766	Q92743	HTRA1_HUMAN	HtrA serine peptidase 1 precursor	211	Serine protease.				proteolysis|regulation of cell growth	extracellular space	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_neural(114;0.0765)|Lung NSC(174;0.133)|all_lung(145;0.163)|Breast(234;0.238)				TATTGTGTCGGAAGATGGACT	0.493													9	74					0	0	0.008291	0	0
DMBT1	1755	broad.mit.edu	37	10	124390709	124390709	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:124390709G>A	uc001lgk.1	+	46	5977	c.5871G>A	c.(5869-5871)GGG>GGA	p.G1957G	DMBT1_uc001lgl.1_Silent_p.G1947G|DMBT1_uc001lgm.1_Silent_p.G1329G|DMBT1_uc009xzz.1_Silent_p.G1957G|DMBT1_uc010qtx.1_Silent_p.G677G|DMBT1_uc009yab.1_Silent_p.G660G|DMBT1_uc009yac.1_Silent_p.G251G	NM_007329	NP_015568	Q9UGM3	DMBT1_HUMAN	deleted in malignant brain tumors 1 isoform b	1957	SRCR 14.				epithelial cell differentiation|induction of bacterial agglutination|innate immune response|interspecies interaction between organisms|protein transport|response to virus	extrinsic to membrane|phagocytic vesicle membrane|zymogen granule membrane	calcium-dependent protein binding|Gram-negative bacterial cell surface binding|Gram-positive bacterial cell surface binding|pattern recognition receptor activity|scavenger receptor activity|zymogen binding			central_nervous_system(7)	7		all_neural(114;0.0765)|Lung NSC(174;0.132)|all_lung(145;0.163)|Breast(234;0.238)				AGTGCTCAGGGACGGAATCCA	0.552													8	79					0	0	0.003080	0	0
C10orf120	399814	broad.mit.edu	37	10	124457698	124457698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:124457698C>T	uc001lgn.2	-	3	591	c.559G>A	c.(559-561)GAA>AAA	p.E187K		NM_001010912	NP_001010912	Q5SQS8	CJ120_HUMAN	hypothetical protein LOC399814	187										kidney(1)	1		all_neural(114;0.169)|Glioma(114;0.222)				GTAAACCTTTCAATGTAGGGT	0.473													8	55					0	0	0.006214	0	0
FANK1	92565	broad.mit.edu	37	10	127697113	127697113	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:127697113C>T	uc001ljh.3	+	8	947	c.843C>T	c.(841-843)CCC>CCT	p.P281P	FANK1_uc009yan.2_Silent_p.P307P|FANK1_uc001lji.2_Silent_p.P275P	NM_145235	NP_660278	Q8TC84	FANK1_HUMAN	fibronectin type III and ankyrin repeat domains	281	ANK 6.					cytoplasm|nucleus				ovary(1)	1		all_lung(145;0.00752)|Lung NSC(174;0.0115)|Colorectal(57;0.0847)|all_neural(114;0.0936)				GAAAGACGCCCCTTATGGTAG	0.468													9	50					0	0	0.006214	0	0
EBF3	253738	broad.mit.edu	37	10	131640528	131640528	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr10:131640528G>A	uc001lki.1	-	13	1256	c.1197C>T	c.(1195-1197)ATC>ATT	p.I399I		NM_001005463	NP_001005463	Q9H4W6	COE3_HUMAN	early B-cell factor 3	408					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|metal ion binding|protein binding			central_nervous_system(1)|pancreas(1)	2		all_cancers(35;1.8e-08)|all_epithelial(44;8.26e-08)|Lung NSC(174;0.0091)|all_lung(145;0.0123)|Breast(234;0.039)|all_neural(114;0.0722)|Colorectal(57;0.0764)		OV - Ovarian serous cystadenocarcinoma(35;0.00513)		GCGCCTCGGCGATGTCCGCCG	0.662													9	59					0	0	0.006214	0	0
MUC6	4588	broad.mit.edu	37	11	1029567	1029567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:1029567G>A	uc001lsw.2	-	9	1115	c.1064C>T	c.(1063-1065)ACC>ATC	p.T355I		NM_005961	NP_005952	Q6W4X9	MUC6_HUMAN	mucin 6, gastric	355	TIL.				maintenance of gastrointestinal epithelium	extracellular region	extracellular matrix structural constituent			ovary(1)	1		all_cancers(49;3.3e-08)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.229)		all cancers(45;1.24e-24)|BRCA - Breast invasive adenocarcinoma(625;0.00031)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)		GGGGCACTGGGTGACGGGCAC	0.642													9	28					0	0	0.006214	0	0
OR51F2	119694	broad.mit.edu	37	11	4843076	4843076	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:4843076G>A	uc010qyn.1	+	1	461	c.461G>A	c.(460-462)CGA>CAA	p.R154Q		NM_001004753	NP_001004753	Q8NH61	O51F2_HUMAN	olfactory receptor, family 51, subfamily F,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|pancreas(1)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.0778)		Epithelial(150;5.06e-12)|BRCA - Breast invasive adenocarcinoma(625;0.00438)|LUSC - Lung squamous cell carcinoma(625;0.19)		ACCAATGCCCGAATTGCCAAG	0.463													35	105					0	0	0.004289	0	0
OR51I2	390064	broad.mit.edu	37	11	5475345	5475345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:5475345G>A	uc010qzf.1	+	1	627	c.627G>A	c.(625-627)ATG>ATA	p.M209I	HBG2_uc001mak.1_Intron|HBE1_uc001mam.1_Intron|OR51B5_uc001maq.1_Intron	NM_001004754	NP_001004754	Q9H344	O51I2_HUMAN	olfactory receptor, family 51, subfamily I,	209	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(2)	4		Medulloblastoma(188;0.0075)|all_neural(188;0.0572)|Breast(177;0.0675)		Epithelial(150;1.09e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)		CCTTTGGCATGGACCTGTTTT	0.483													13	108					0	0	0.002450	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537042	5537042	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:5537042T>G	uc001maz.3	-	1	915	c.630A>C	c.(628-630)GAA>GAC	p.E210D	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	210										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		GGCGGGAAACTTCTGGGTTCT	0.463													18	100					0	0	0.004990	0	0
OR56A3	390083	broad.mit.edu	37	11	5968788	5968788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:5968788C>T	uc010qzt.1	+	1	212	c.212C>T	c.(211-213)TCC>TTC	p.S71F		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	71	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		AGCCTCCTCTCCCTGCTGGAC	0.602													24	76					0	0	0.002780	0	0
OR56A3	390083	broad.mit.edu	37	11	5969142	5969142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:5969142C>T	uc010qzt.1	+	1	566	c.566C>T	c.(565-567)TCC>TTC	p.S189F		NM_001003443	NP_001003443	Q8NH54	O56A3_HUMAN	olfactory receptor, family 56, subfamily A,	189	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;9.41e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ATGTCTGTTTCCAGACTCTCC	0.463													24	40					0	0	0.002780	0	0
HPX	3263	broad.mit.edu	37	11	6453013	6453013	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:6453013G>A	uc001mdg.2	-	9	1048	c.987C>T	c.(985-987)TTC>TTT	p.F329F	HPX_uc001mdf.2_Silent_p.F75F|HPX_uc009yfc.2_RNA	NM_000613	NP_000604	P02790	HEMO_HUMAN	hemopexin precursor	329	Hemopexin-like 5.				cellular iron ion homeostasis|interspecies interaction between organisms	extracellular space	heme transporter activity|metal ion binding|protein binding				0		Medulloblastoma(188;0.00776)|all_neural(188;0.0652)|Breast(177;0.114)		Epithelial(150;5.46e-08)|BRCA - Breast invasive adenocarcinoma(625;0.19)		CCTTTGTCAGGAAGACATATA	0.517													14	97					0	0	0.001855	0	0
OR6A2	8590	broad.mit.edu	37	11	6816144	6816144	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:6816144G>A	uc001mes.1	-	1	996	c.796C>T	c.(796-798)CGG>TGG	p.R266W		NM_003696	NP_003687	O95222	OR6A2_HUMAN	olfactory receptor, family 6, subfamily A,	266	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity	p.R266W(1)		ovary(3)|central_nervous_system(1)|pancreas(1)	5		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		GCCTTTGGCCGAGCATAGATG	0.473													12	56					0	0	0.010729	0	0
OR10A5	144124	broad.mit.edu	37	11	6867376	6867376	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:6867376C>T	uc001met.1	+	1	463	c.463C>T	c.(463-465)CCT>TCT	p.P155S		NM_178168	NP_835462	Q9H207	O10A5_HUMAN	olfactory receptor, family 10, subfamily A,	155	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.68e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		CCCAGGCTTTCCTGTAGCTAC	0.542													11	71					0	0	0.008291	0	0
OR2D3	120775	broad.mit.edu	37	11	6942379	6942379	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:6942379C>T	uc010rav.1	+	1	147	c.147C>T	c.(145-147)ATC>ATT	p.I49I		NM_001004684	NP_001004684	Q8NGH3	OR2D3_HUMAN	olfactory receptor, family 2, subfamily D,	49	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0523)|all_neural(188;0.236)		Epithelial(150;4.78e-08)|BRCA - Breast invasive adenocarcinoma(625;0.129)		TTTTCCTCATCATTTATCTGC	0.423													6	54					0	0	0.003080	0	0
ZNF214	7761	broad.mit.edu	37	11	7021272	7021272	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:7021272G>A	uc001mfa.2	-	3	1945	c.1642C>T	c.(1642-1644)CAT>TAT	p.H548Y	ZNF214_uc010ray.1_Missense_Mutation_p.H548Y|ZNF214_uc009yfh.1_Missense_Mutation_p.H548Y	NM_013249	NP_037381	Q9UL59	ZN214_HUMAN	zinc finger protein 214	548	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1				Epithelial(150;3.87e-08)|BRCA - Breast invasive adenocarcinoma(625;0.081)		TCTCCTGTATGGACCCTCTGA	0.418													10	64					0	0	0.008291	0	0
MRVI1	10335	broad.mit.edu	37	11	10615060	10615060	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:10615060G>A	uc010rcc.1	-	17	2540	c.2154C>T	c.(2152-2154)TCC>TCT	p.S718S	uc001miu.2_Intron|MRVI1_uc001miw.2_Silent_p.S709S|MRVI1_uc010rcb.1_Silent_p.S710S|MRVI1_uc009ygb.1_Silent_p.S403S|MRVI1_uc001mix.2_Silent_p.S403S|MRVI1_uc001miz.2_Silent_p.S627S|MRVI1_uc009ygc.1_Silent_p.S627S|MRVI1_uc010rcd.1_Silent_p.S512S|MRVI1_uc009ygd.1_Silent_p.S403S|MRVI1_uc010rce.1_RNA	NM_001100167	NP_001093637	Q9Y6F6	MRVI1_HUMAN	JAW1-related protein isoform c	691					platelet activation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm|platelet dense tubular network membrane|sarcoplasmic reticulum				ovary(2)|central_nervous_system(1)	3				all cancers(16;2.68e-07)|Epithelial(150;3.04e-07)|BRCA - Breast invasive adenocarcinoma(625;0.0723)		AGGAGGGAATGGATGATGAGC	0.517													16	34					0	0	0.007413	0	0
SPON1	10418	broad.mit.edu	37	11	14063082	14063082	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:14063082A>C	uc001mle.2	+	3	898	c.360A>C	c.(358-360)GAA>GAC	p.E120D		NM_006108	NP_006099	Q9HCB6	SPON1_HUMAN	spondin 1, extracellular matrix protein	120	Reelin.				cell adhesion	extracellular space|proteinaceous extracellular matrix	protein binding				0				Epithelial(150;0.00898)		TAGACGAAGAAGAAACTCAGT	0.453													10	115					0	0	0.008291	0	0
PSMA1	5682	broad.mit.edu	37	11	14535181	14535181	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:14535181G>A	uc001mlk.2	-	7	625	c.479C>T	c.(478-480)TCC>TTC	p.S160F	PSMA1_uc001mll.2_Missense_Mutation_p.S166F|PSMA1_uc010rcp.1_RNA|PSMA1_uc001mlj.2_Missense_Mutation_p.S135F	NM_002786	NP_002777	P25786	PSA1_HUMAN	proteasome alpha 1 subunit isoform 2	160					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cytoplasm|nucleus|polysome|proteasome core complex, alpha-subunit complex	protein binding|RNA binding|threonine-type endopeptidase activity			upper_aerodigestive_tract(1)|skin(1)	2						GGCTCCAATGGACATGGCTCT	0.373													8	23					0	0	0.003080	0	0
PDE3B	5140	broad.mit.edu	37	11	14865471	14865471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:14865471C>T	uc001mln.2	+	12	2772	c.2419C>T	c.(2419-2421)CCT>TCT	p.P807S	PDE3B_uc010rcr.1_Missense_Mutation_p.P756S	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	807	Catalytic (By similarity).				cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						TTCAAACATTCCTGCATTAGA	0.438													32	61					0	0	0.013726	0	0
PLEKHA7	144100	broad.mit.edu	37	11	16822622	16822622	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:16822622C>T	uc001mmo.2	-	17	2323	c.2308G>A	c.(2308-2310)GAG>AAG	p.E770K	PLEKHA7_uc010rcu.1_Missense_Mutation_p.E770K|PLEKHA7_uc010rcv.1_Missense_Mutation_p.E344K|PLEKHA7_uc001mmn.2_Missense_Mutation_p.E478K	NM_175058	NP_778228	Q6IQ23	PKHA7_HUMAN	pleckstrin homology domain containing, family A	770	Potential.				epithelial cell-cell adhesion|zonula adherens maintenance	centrosome|zonula adherens	delta-catenin binding			skin(2)|central_nervous_system(1)	3						TTTTCCATCTCCTGTTGGCCA	0.517													21	113					0	0	0.012319	0	0
PTPN5	84867	broad.mit.edu	37	11	18754841	18754841	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:18754841C>T	uc001mpd.2	-	11	1590	c.1159G>A	c.(1159-1161)GTG>ATG	p.V387M	PTPN5_uc001mpb.2_Missense_Mutation_p.V355M|PTPN5_uc001mpc.2_Missense_Mutation_p.V387M|PTPN5_uc001mpe.2_Missense_Mutation_p.V355M|PTPN5_uc010rdj.1_Missense_Mutation_p.V331M|PTPN5_uc001mpf.2_Missense_Mutation_p.V363M|PTPN5_uc010rdk.1_Missense_Mutation_p.V332M	NM_006906	NP_008837	P54829	PTN5_HUMAN	protein-tyrosine-phosphatase non-receptor 5	387	Tyrosine-protein phosphatase.					integral to membrane	phosphotyrosine binding|protein tyrosine phosphatase activity			ovary(2)	2						TCCTGCCACACCATGCGCCAG	0.587													21	67					0	0	0.012319	0	0
SLC5A12	159963	broad.mit.edu	37	11	26714049	26714049	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:26714049G>A	uc001mra.2	-	9	1453	c.1140C>T	c.(1138-1140)ATC>ATT	p.I380I	SLC5A12_uc001mrb.2_RNA|SLC5A12_uc001mrc.3_Silent_p.I380I	NM_178498	NP_848593	Q1EHB4	SC5AC_HUMAN	solute carrier family 5 (sodium/glucose	380	Cytoplasmic (Potential).				sodium ion transport	apical plasma membrane|integral to membrane	symporter activity			ovary(1)|skin(1)	2						AGCCTTTACTGATCCAGGTGC	0.458													6	32					0	0	0.001168	0	0
METT5D1	196074	broad.mit.edu	37	11	28311863	28311863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:28311863C>T	uc001msh.2	+	5	973	c.518C>T	c.(517-519)TCC>TTC	p.S173F	METT5D1_uc001msg.2_Missense_Mutation_p.S173F|METT5D1_uc001mse.2_Missense_Mutation_p.S173F	NM_001113528	NP_001107000	A6NJ78	MET15_HUMAN	methyltransferase 5 domain containing 1 isoform	173							methyltransferase activity				0						CTTGGGTGTTCCTCCATGCAA	0.473													22	63					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	11	30938460	30938460	+	RNA	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:30938460C>T	uc001mss.1	-	4		c.512G>A			uc009yjk.1_Missense_Mutation_p.E585K					Homo sapiens mRNA for KIAA1493 protein, partial cds.																		AGCCCTTTTTCCGTTTTCTTT	0.413													17	30					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	11	30953328	30953328	+	Missense_Mutation	SNP	G	A	A	rs150997514	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:30953328G>A	uc009yjk.1	-	10	1300	c.1231C>T	c.(1231-1233)CGG>TGG	p.R411W	uc009yjl.1_3'UTR					RecName: Full=Doublecortin domain-containing protein 5;																		TGCGTTTTCCGTCCAGGTGAG	0.378													7	18					0	0	0.003080	0	0
CCDC73	493860	broad.mit.edu	37	11	32635300	32635300	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:32635300C>T	uc001mtv.2	-	16	2608	c.2564G>A	c.(2563-2565)GGA>GAA	p.G855E		NM_001008391	NP_001008392	Q6ZRK6	CCD73_HUMAN	sarcoma antigen NY-SAR-79	855										ovary(1)|central_nervous_system(1)	2	Breast(20;0.112)					GAACATTTTTCCTGAAACAAT	0.348													12	78					0	0	0.010729	0	0
OR4P4	81300	broad.mit.edu	37	11	55405836	55405836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:55405836G>A	uc010rij.1	+	1	3	c.3G>A	c.(1-3)ATG>ATA	p.M1I		NM_001004124	NP_001004124	Q8NGL7	OR4P4_HUMAN	olfactory receptor, family 4, subfamily P,	1	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			central_nervous_system(1)	1						ACTGGACCATGGAAAAAAGCA	0.303													34	74					0	0	0.003271	0	0
SPRYD5	84767	broad.mit.edu	37	11	55653274	55653274	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:55653274C>T	uc010rip.1	+	2	462	c.370C>T	c.(370-372)CAC>TAC	p.H124Y	SPRYD5_uc010riq.1_5'Flank	NM_032681	NP_116070	Q9BSJ1	SPRY5_HUMAN	SPRY domain containing 5	124	B box-type.					intracellular	zinc ion binding				0		all_epithelial(135;0.226)				GCACCGGAATCACATACACTG	0.478													7	19					0	0	0.004482	0	0
OR8I2	120586	broad.mit.edu	37	11	55861147	55861147	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:55861147C>T	uc010rix.1	+	1	364	c.364C>T	c.(364-366)CGC>TGC	p.R122C		NM_001003750	NP_001003750	Q8N0Y5	OR8I2_HUMAN	olfactory receptor, family 8, subfamily I,	122	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			breast(1)	1	Esophageal squamous(21;0.00693)					GGCCTACAATCGCTACATAGC	0.433													22	51					0	0	0.010504	0	0
GLYATL2	219970	broad.mit.edu	37	11	58604580	58604580	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:58604580C>T	uc001nnd.3	-	5	515	c.384G>A	c.(382-384)ATG>ATA	p.M128I	GLYATL2_uc009ymq.2_Missense_Mutation_p.M128I	NM_145016	NP_659453	Q8WU03	GLYL2_HUMAN	glycine-N-acyltransferase-like 2	128						mitochondrion	glycine N-acyltransferase activity			ovary(1)|skin(1)	2		Breast(21;0.0044)|all_epithelial(135;0.0216)			Glycine(DB00145)	GGATGGTTTTCATGTAATCTA	0.388													21	52					0	0	0.010504	0	0
OR5A2	219981	broad.mit.edu	37	11	59189494	59189494	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:59189494C>T	uc010rkt.1	-	1	933	c.933G>A	c.(931-933)GGG>GGA	p.G311G		NM_001001954	NP_001001954	Q8NGI9	OR5A2_HUMAN	olfactory receptor, family 5, subfamily A,	311	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						CGTGAGAAATCCCGGGGTCCC	0.418													8	47					0	0	0.004482	0	0
SLC22A6	9356	broad.mit.edu	37	11	62747245	62747245	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:62747245C>T	uc001nwk.2	-	7	1520	c.1213G>A	c.(1213-1215)GCA>ACA	p.A405T	SLC22A6_uc001nwl.2_Missense_Mutation_p.A405T|SLC22A6_uc001nwj.2_Missense_Mutation_p.A405T|SLC22A6_uc001nwm.2_Missense_Mutation_p.A405T	NM_004790	NP_004781	Q4U2R8	S22A6_HUMAN	solute carrier family 22 member 6 isoform a	405	Helical; (Potential).				alpha-ketoglutarate transport	basolateral plasma membrane|integral to plasma membrane|membrane fraction	inorganic anion exchanger activity|protein binding				0						CAGATGCCTGCCAGCAGCAGT	0.612													4	32					0	0	0.000602	0	0
SLC22A10	387775	broad.mit.edu	37	11	63129941	63129941	+	RNA	SNP	G	A	A	rs148177936	by1000genomes	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:63129941G>A	uc010rmo.1	+	9		c.1063G>A						Q63ZE4	S22AA_HUMAN	Homo sapiens mRNA for putative protein product of HMFN2567, complete cds.							integral to membrane	transmembrane transporter activity			ovary(2)	2						TGCTGGAATAGAATGAAGAAT	0.448													5	12					0	0	0.001168	0	0
PLCB3	5331	broad.mit.edu	37	11	64023222	64023222	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:64023222C>T	uc001nzb.2	+	8	627	c.627C>T	c.(625-627)TCC>TCT	p.S209S	PLCB3_uc009ypg.1_Silent_p.S209S|PLCB3_uc009yph.1_Silent_p.S142S|PLCB3_uc009ypi.2_Silent_p.S209S	NM_000932	NP_000923	Q01970	PLCB3_HUMAN	phospholipase C beta 3	209					intracellular signal transduction|lipid catabolic process|synaptic transmission	cytosol	calcium ion binding|calmodulin binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|pancreas(1)	2						ATGAGTTTTCCTTGGAAATCT	0.612													15	90					0	0	0.006122	0	0
MALAT1	378938	broad.mit.edu	37	11	65266481	65266481	+	RNA	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:65266481C>T	uc010roh.1	+	1		c.1249C>T				NR_002819				Homo sapiens clone alpha1 mRNA sequence.												0						GAGTTGTTCTCCGTCTATAAA	0.537													19	73					0	0	0.014323	0	0
TCIRG1	10312	broad.mit.edu	37	11	67816682	67816682	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:67816682C>T	uc001one.2	+	15	1916	c.1808C>T	c.(1807-1809)GCC>GTC	p.A603V	TCIRG1_uc001ong.2_Missense_Mutation_p.A387V|TCIRG1_uc001onh.2_Missense_Mutation_p.A305V|TCIRG1_uc001oni.2_Missense_Mutation_p.A107V|TCIRG1_uc009ysd.2_5'Flank	NM_006019	NP_006010	Q13488	VPP3_HUMAN	T-cell, immune regulator 1 isoform a	603	Helical; (Potential).			Missing (in Ref. 1; AAA97878).	ATP hydrolysis coupled proton transport|cellular defense response|cellular iron ion homeostasis|insulin receptor signaling pathway|positive regulation of cell proliferation|transferrin transport	apical plasma membrane|endosome membrane|integral to plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	hydrogen ion transmembrane transporter activity			ovary(1)	1						GCCGCCTCGGCCCCCAGCATC	0.632													28	77					0	0	0.009535	0	0
SUV420H1	51111	broad.mit.edu	37	11	67939171	67939171	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:67939171C>T	uc001onm.1	-	7	915	c.659G>A	c.(658-660)CGA>CAA	p.R220Q	SUV420H1_uc009yse.1_5'UTR|SUV420H1_uc001onn.1_Missense_Mutation_p.R48Q|SUV420H1_uc009ysf.2_Intron|SUV420H1_uc001ono.1_Missense_Mutation_p.R220Q|SUV420H1_uc001onp.2_Missense_Mutation_p.R220Q|SUV420H1_uc010rqa.1_Missense_Mutation_p.R197Q|SUV420H1_uc001onq.2_Missense_Mutation_p.R220Q	NM_017635	NP_060105	Q4FZB7	SV421_HUMAN	suppressor of variegation 4-20 homolog 1 isoform	220	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			ovary(2)|kidney(1)	3						TTTGTCATTTCGTTTCCTATT	0.299													7	32					0	0	0.001984	0	0
SHANK2	22941	broad.mit.edu	37	11	70333073	70333073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:70333073C>T	uc001oqc.2	-	21	3403	c.3325G>A	c.(3325-3327)GAT>AAT	p.D1109N	SHANK2_uc010rqn.1_Missense_Mutation_p.D521N|SHANK2_uc001opz.2_Missense_Mutation_p.D514N|uc009ysn.1_Intron|SHANK2_uc001opy.2_Intron	NM_012309	NP_036441	Q9UPX8	SHAN2_HUMAN	SH3 and multiple ankyrin repeat domains 2	730					intracellular signal transduction	cell junction|cytoplasm|postsynaptic density|postsynaptic membrane	GKAP/Homer scaffold activity|ionotropic glutamate receptor binding|SH3 domain binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(11;4.72e-09)|STAD - Stomach adenocarcinoma(18;0.071)			ACATCCTCATCCCCCAGGTCT	0.697													15	39					0	0	0.004007	0	0
P2RY2	5029	broad.mit.edu	37	11	72946232	72946232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:72946232G>A	uc001otj.2	+	3	1361	c.1028G>A	c.(1027-1029)AGA>AAA	p.R343K	P2RY2_uc001otk.2_Missense_Mutation_p.R343K|P2RY2_uc001otl.2_Missense_Mutation_p.R343K	NM_002564	NP_002555	P41231	P2RY2_HUMAN	purinergic receptor P2Y2	343	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger	integral to plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(2)|lung(1)|skin(1)	4					Suramin(DB04786)	AGATCCGACAGAACTGACATG	0.637													13	56					0	0	0.001855	0	0
ARHGEF17	9828	broad.mit.edu	37	11	73022436	73022436	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:73022436T>C	uc001otu.2	+	1	2774	c.2753T>C	c.(2752-2754)ATC>ACC	p.I918T		NM_014786	NP_055601	Q96PE2	ARHGH_HUMAN	Rho guanine nucleotide exchange factor (GEF) 17	918					actin cytoskeleton organization|apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	Rho guanyl-nucleotide exchange factor activity				0						CCGAGGCTAATCCGCCGAGGC	0.637													14	53					0	0	0.002450	0	0
FAT3	120114	broad.mit.edu	37	11	92086811	92086811	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:92086811C>T	uc001pdj.3	+	1	1550	c.1533C>T	c.(1531-1533)ATC>ATT	p.I511I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	511	Cadherin 5.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				CCTATAGTATCGCTAGCCTGA	0.383										TCGA Ovarian(4;0.039)			106	271					0	0	0.014410	0	0
CCDC67	159989	broad.mit.edu	37	11	93141502	93141502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:93141502G>A	uc001pdq.2	+	12	1532	c.1432G>A	c.(1432-1434)GGA>AGA	p.G478R	CCDC67_uc001pdo.1_Missense_Mutation_p.G478R	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	478										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				TCATGTCAATGGAAAATCAAC	0.373													3	3					0	0	0.004672	0	0
MRE11A	4361	broad.mit.edu	37	11	94169038	94169038	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:94169038C>T	uc001peu.2	-	18	2143	c.1954G>A	c.(1954-1956)GAA>AAA	p.E652K	MRE11A_uc001pev.2_Missense_Mutation_p.E624K|MRE11A_uc009ywj.2_Missense_Mutation_p.E655K	NM_005591	NP_005582	P49959	MRE11_HUMAN	meiotic recombination 11 homolog A isoform 1	652					DNA duplex unwinding|double-strand break repair via homologous recombination|double-strand break repair via nonhomologous end joining|negative regulation of DNA endoreduplication|positive regulation of kinase activity|positive regulation of protein autophosphorylation|reciprocal meiotic recombination|regulation of mitotic recombination|sister chromatid cohesion|telomere maintenance via telomerase	Mre11 complex|nucleoplasm	3'-5' exonuclease activity|double-stranded DNA binding|manganese ion binding|protein C-terminus binding|single-stranded DNA specific endodeoxyribonuclease activity			breast(4)|lung(1)	5		Acute lymphoblastic leukemia(157;2.37e-05)|all_hematologic(158;0.00824)				ATGTCTTCTTCCACATCTGAT	0.328								Homologous_recombination	Ataxia-Telangiectasia-Like_Disorder				11	54					0	0	0.013537	0	0
MMP1	4312	broad.mit.edu	37	11	102662226	102662226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:102662226C>T	uc001phi.2	-	8	1177	c.1034G>A	c.(1033-1035)GGG>GAG	p.G345E	uc001phh.1_Intron|MMP1_uc010ruv.1_Missense_Mutation_p.G279E	NM_002421	NP_002412	P03956	MMP1_HUMAN	matrix metalloproteinase 1 isoform 1	345	Hemopexin-like 2.				blood coagulation|collagen catabolic process|interspecies interaction between organisms|leukocyte migration|proteolysis	proteinaceous extracellular matrix	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(2)|ovary(1)|lung(1)	4	all_epithelial(12;0.0127)	all_neural(303;0.000318)|all_hematologic(158;0.00092)|Acute lymphoblastic leukemia(157;0.000967)	Epithelial(9;0.072)|Lung(13;0.0828)|LUSC - Lung squamous cell carcinoma(19;0.151)|all cancers(10;0.233)	OV - Ovarian serous cystadenocarcinoma(223;1.82e-07)|Epithelial(105;1.51e-06)|BRCA - Breast invasive adenocarcinoma(274;0.014)		GTACTTATTCCCTGCCAATCA	0.428													35	76					0	0	0.013726	0	0
DSCAML1	57453	broad.mit.edu	37	11	117376338	117376338	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:117376338C>T	uc001prh.1	-	9	2075	c.2073G>A	c.(2071-2073)AGG>AGA	p.R691R		NM_020693	NP_065744	Q8TD84	DSCL1_HUMAN	Down syndrome cell adhesion molecule like 1	631	Extracellular (Potential).|Ig-like C2-type 7.				axonogenesis|brain development|cell fate determination|dorsal/ventral pattern formation|embryonic skeletal system morphogenesis|homophilic cell adhesion	cell surface|integral to membrane|plasma membrane	protein homodimerization activity			ovary(3)|large_intestine(2)|skin(2)|upper_aerodigestive_tract(1)	8	all_hematologic(175;0.0487)	Breast(348;0.0424)|Medulloblastoma(222;0.0523)|all_hematologic(192;0.232)		BRCA - Breast invasive adenocarcinoma(274;9.12e-06)|Epithelial(105;0.00172)		GTCCGTCCTTCCTCCAGGTGA	0.587													16	31					0	0	0.004007	0	0
TMPRSS13	84000	broad.mit.edu	37	11	117774375	117774375	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:117774375T>A	uc001prs.1	-	12	1765	c.1672A>T	c.(1672-1674)ATG>TTG	p.M558L	TMPRSS13_uc009yzr.1_Missense_Mutation_p.M237L|TMPRSS13_uc001prt.1_Missense_Mutation_p.M237L	NM_001077263	NP_001070731	Q9BYE2	TMPSD_HUMAN	transmembrane protease, serine 13	553	Extracellular (Potential).|Peptidase S1.				proteolysis	integral to membrane	scavenger receptor activity|serine-type endopeptidase activity			pancreas(1)	1	all_hematologic(175;0.0487)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.78e-05)|Epithelial(105;0.00106)		CTTACCTCCATCTTGCTGTAA	0.582													20	29					0	0	0.003330	0	0
BCL9L	283149	broad.mit.edu	37	11	118773223	118773223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:118773223G>A	uc001pug.2	-	6	2194	c.1229C>T	c.(1228-1230)TCC>TTC	p.S410F	BCL9L_uc009zal.2_Missense_Mutation_p.S405F	NM_182557	NP_872363	Q86UU0	BCL9L_HUMAN	B-cell CLL/lymphoma 9-like	410	Pro-rich.|Necessary for interaction with CTNNB1 (By similarity).				negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of epithelial to mesenchymal transition|positive regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent		transcription coactivator activity			ovary(1)|pancreas(1)	2	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|all_hematologic(192;0.103)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.66e-05)		CGTCTGGAGGGACCGTTCCCG	0.687													7	29					0	0	0.003080	0	0
DPAGT1	1798	broad.mit.edu	37	11	118967749	118967749	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:118967749A>T	uc001pvi.2	-	9	1606	c.1186T>A	c.(1186-1188)TCC>ACC	p.S396T	H2AFX_uc001pvg.2_5'Flank|H2AFX_uc001pvh.1_5'Flank|DPAGT1_uc001pvj.2_Missense_Mutation_p.S289T|DPAGT1_uc009zaq.2_RNA|DPAGT1_uc001pvk.2_Missense_Mutation_p.S224T|DPAGT1_uc010ryz.1_Missense_Mutation_p.S396T|DPAGT1_uc001pvm.1_3'UTR|DPAGT1_uc010rza.1_Missense_Mutation_p.S315T	NM_001382	NP_001373	Q9H3H5	GPT_HUMAN	UDP-N-acetylglucosamine-dolichyl-phosphate	396	Helical; (Potential).				dolichol biosynthetic process|dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine|protein oligomerization	integral to endoplasmic reticulum membrane|microsome	phospho-N-acetylmuramoyl-pentapeptide-transferase activity|transferase activity, transferring glycosyl groups|UDP-N-acetylglucosamine-dolichyl-phosphate N-acetylglucosaminephosphotransferase activity			breast(2)|ovary(1)	3	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.55e-05)		TATCGAATGGAGAAGGTGATG	0.488													13	26					0	0	0.002450	0	0
SORL1	6653	broad.mit.edu	37	11	121476278	121476278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:121476278G>A	uc001pxx.2	+	35	5026	c.4946G>A	c.(4945-4947)GGA>GAA	p.G1649E	SORL1_uc010rzp.1_Missense_Mutation_p.G495E|SORL1_uc010rzq.1_Missense_Mutation_p.G264E	NM_003105	NP_003096	Q92673	SORL_HUMAN	sortilin-related receptor containing LDLR class	1649	Extracellular (Potential).				cholesterol metabolic process|lipid transport|receptor-mediated endocytosis	integral to plasma membrane|low-density lipoprotein particle	low-density lipoprotein particle binding|transmembrane receptor activity			ovary(5)|breast(4)|large_intestine(2)|skin(2)|central_nervous_system(1)|pancreas(1)	15		Breast(109;0.00119)|Medulloblastoma(222;0.0429)|all_neural(223;0.113)		BRCA - Breast invasive adenocarcinoma(274;3.34e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.108)		ACCCCAGAGGGATGTAAGTGT	0.458													32	93					0	0	0.013726	0	0
C11orf63	79864	broad.mit.edu	37	11	122795661	122795661	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:122795661G>A	uc001pym.2	+	4	1218	c.921G>A	c.(919-921)ATG>ATA	p.M307I		NM_024806	NP_079082	Q6NUN7	CK063_HUMAN	hypothetical protein LOC79864 isoform 1	307										ovary(3)	3		Breast(109;0.00249)|Lung NSC(97;0.0177)|all_lung(97;0.018)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;5.34e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0311)		CCAAGGAAATGGAAAATGCTG	0.353													16	42					0	0	0.008871	0	0
OR6T1	219874	broad.mit.edu	37	11	123813602	123813602	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:123813602T>G	uc010sab.1	-	1	944	c.944A>C	c.(943-945)AAA>ACA	p.K315T		NM_001005187	NP_001005187	Q8NGN1	OR6T1_HUMAN	olfactory receptor, family 6, subfamily T,	315	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		GACCCTCAGTTTCATCACAGC	0.428													3	94					0	0	0.004672	0	0
OR10G4	390264	broad.mit.edu	37	11	123886770	123886770	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:123886770C>T	uc010sac.1	+	1	489	c.489C>T	c.(487-489)TTC>TTT	p.F163F		NM_001004462	NP_001004462	Q8NGN3	O10G4_HUMAN	olfactory receptor, family 10, subfamily G,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)|central_nervous_system(1)	4		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0401)		TATTGACTTTCCATTTGCCCT	0.577													18	53					0	0	0.003755	0	0
OR10G9	219870	broad.mit.edu	37	11	123894487	123894487	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:123894487C>T	uc010sad.1	+	1	768	c.768C>T	c.(766-768)TTC>TTT	p.F256F		NM_001001953	NP_001001953	Q8NGN4	O10G9_HUMAN	olfactory receptor, family 10, subfamily G,	256	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCTGTGTTTTCATTTACCTGA	0.542													12	55					0	0	0.013537	0	0
OR10G7	390265	broad.mit.edu	37	11	123909220	123909220	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:123909220G>A	uc001pzq.1	-	1	489	c.489C>T	c.(487-489)TTC>TTT	p.F163F		NM_001004463	NP_001004463	Q8NGN6	O10G7_HUMAN	olfactory receptor, family 10, subfamily G,	163	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0521)		AGGGCAAATGGAAAGTCAATA	0.577													6	134					0	0	0.013537	0	0
PUS3	83480	broad.mit.edu	37	11	125766075	125766075	+	Silent	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:125766075A>G	uc001qcy.2	-	2	203	c.105T>C	c.(103-105)AAT>AAC	p.N35N	HYLS1_uc009zbv.2_Intron|HYLS1_uc001qcx.3_Intron	NM_031307	NP_112597	Q9BZE2	PUS3_HUMAN	pseudouridylate synthase 3	35						nucleus	RNA binding			ovary(1)	1	all_hematologic(175;0.177)	Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.131)|all_lung(97;0.139)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.1e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.043)		AGTCCTCCTTATTTTTGGCCT	0.423													16	92					0	0	0.004990	0	0
CDON	50937	broad.mit.edu	37	11	125853845	125853845	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:125853845G>A	uc009zbw.2	-	16	3045	c.2917C>T	c.(2917-2919)CTG>TTG	p.L973L	CDON_uc001qdb.3_Silent_p.L350L|CDON_uc001qdc.3_Silent_p.L973L	NM_016952	NP_058648	Q4KMG0	CDON_HUMAN	surface glycoprotein, Ig superfamily member	973	Helical; (Potential).				cell adhesion|muscle cell differentiation|positive regulation of muscle cell differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|skin(2)|breast(1)	6	all_hematologic(175;0.177)	Breast(109;0.00157)|Lung NSC(97;0.0127)|all_lung(97;0.0133)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.51e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0604)		ATGACGCCCAGCACACAGCCA	0.478													3	34					0	0	0.004672	0	0
ST14	6768	broad.mit.edu	37	11	130059739	130059740	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr11:130059739_130059740CC>TT	uc001qfw.2	+	5	739_740	c.546_547CC>TT	c.(544-549)CCCCCG>CCTTCG	p.P183S	ST14_uc010sca.1_5'Flank	NM_021978	NP_068813	Q9Y5Y6	ST14_HUMAN	matriptase	183	Extracellular (Potential).				proteolysis	integral to plasma membrane	serine-type endopeptidase activity			ovary(2)|skin(2)|central_nervous_system(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000602)|Breast(109;0.000962)|all_lung(97;0.00126)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0183)|Lung(977;0.228)	Urokinase(DB00013)	TCATGCTGCCCCCGCGGGCGCG	0.668													19	52					0	0	0.004672	0	0
LRTM2	654429	broad.mit.edu	37	12	1943561	1943561	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:1943561G>A	uc001qjt.2	+	5	1593	c.787G>A	c.(787-789)GAT>AAT	p.D263N	CACNA2D4_uc001qjp.2_Intron|CACNA2D4_uc009zds.1_Intron|CACNA2D4_uc009zdt.1_Intron|CACNA2D4_uc009zdr.1_Intron|LRTM2_uc001qju.2_Missense_Mutation_p.D263N|LRTM2_uc010sdx.1_Missense_Mutation_p.D263N|LRTM2_uc001qjv.2_Missense_Mutation_p.D25N	NM_001039029	NP_001034118	Q8N967	LRTM2_HUMAN	leucine-rich repeats and transmembrane domains 2	263	Extracellular (Potential).					integral to membrane				large_intestine(1)	1	Ovarian(42;0.107)		OV - Ovarian serous cystadenocarcinoma(31;0.000834)			AGCTGGGCTGGATATTCCTGG	0.637													4	22					0	0	0.009096	0	0
CACNA1C	775	broad.mit.edu	37	12	2224708	2224708	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:2224708G>A	uc009zdu.1	+	2	681	c.368G>A	c.(367-369)TGG>TAG	p.W123*	CACNA1C_uc009zdv.1_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkb.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkc.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qke.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkf.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qjz.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkd.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkg.2_Nonsense_Mutation_p.W123*|CACNA1C_uc009zdw.1_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkh.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkl.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkn.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qko.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkp.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkr.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qku.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkq.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qks.2_Nonsense_Mutation_p.W123*|CACNA1C_uc001qkt.2_Nonsense_Mutation_p.W123*	NM_199460	NP_955630	Q13936	CAC1C_HUMAN	calcium channel, voltage-dependent, L type,	123	Cytoplasmic (Potential).|I.				axon guidance|calcium ion transport into cytosol|energy reserve metabolic process|regulation of insulin secretion	cytoplasm|postsynaptic density|voltage-gated calcium channel complex	calmodulin binding|voltage-gated calcium channel activity			ovary(10)|central_nervous_system(1)	11			OV - Ovarian serous cystadenocarcinoma(31;0.00256)	LUAD - Lung adenocarcinoma(1;0.134)	Ibutilide(DB00308)|Isradipine(DB00270)|Magnesium Sulfate(DB00653)|Mibefradil(DB01388)|Nicardipine(DB00622)|Verapamil(DB00661)	ATTGTCGAATGGAAATATCCT	0.647													3	24					0	0	0.009096	0	0
AKAP3	10566	broad.mit.edu	37	12	4736365	4736365	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:4736365G>A	uc001qnb.3	-	4	1932	c.1703C>T	c.(1702-1704)CCC>CTC	p.P568L		NM_006422	NP_006413	O75969	AKAP3_HUMAN	A-kinase anchor protein 3	568					acrosome reaction|cellular component movement	acrosomal vesicle	protein kinase A binding			skin(3)|large_intestine(1)|ovary(1)|kidney(1)	6						AGATTCATCGGGAGCTACAGG	0.478													4	41					0	0	0.009096	0	0
KCNA6	3742	broad.mit.edu	37	12	4919804	4919804	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:4919804C>T	uc001qng.2	+	1	1463	c.597C>T	c.(595-597)TTC>TTT	p.F199F		NM_002235	NP_002226	P17658	KCNA6_HUMAN	potassium voltage-gated channel, shaker-related	199						voltage-gated potassium channel complex	voltage-gated potassium channel activity			skin(2)|ovary(1)	3						TACCCCAGTTCCGTGTAGATG	0.557										HNSCC(72;0.22)			4	28					0	0	0.009096	0	0
C1S	716	broad.mit.edu	37	12	7177387	7177387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:7177387C>T	uc001qsj.2	+	15	2218	c.1499C>T	c.(1498-1500)TCC>TTC	p.S500F	C1S_uc001qsk.2_Missense_Mutation_p.S500F|C1S_uc001qsl.2_Missense_Mutation_p.S500F|C1S_uc009zfr.2_Missense_Mutation_p.S333F|C1S_uc009zfs.2_RNA	NM_201442	NP_958850	P09871	C1S_HUMAN	complement component 1, s subcomponent	500	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular region	calcium ion binding|serine-type endopeptidase activity			skin(1)	1					Abciximab(DB00054)|Adalimumab(DB00051)|Basiliximab(DB00074)|Cetuximab(DB00002)|Etanercept(DB00005)|Gemtuzumab ozogamicin(DB00056)|Ibritumomab(DB00078)|Immune globulin(DB00028)|Muromonab(DB00075)|Rituximab(DB00073)|Trastuzumab(DB00072)	CTGGCAAAATCCAAGATGCTC	0.512													6	23					0	0	0.001984	0	0
CD163	9332	broad.mit.edu	37	12	7635262	7635262	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:7635262C>T	uc001qsz.3	-	14	3352	c.3224G>A	c.(3223-3225)CGA>CAA	p.R1075Q	CD163_uc001qta.3_Missense_Mutation_p.R1075Q|CD163_uc009zfw.2_Missense_Mutation_p.R1108Q	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	1075	Cytoplasmic (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						TCTCTGTCTTCGCTTTTTAGT	0.433													15	110					0	0	0.006122	0	0
PZP	5858	broad.mit.edu	37	12	9345243	9345243	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:9345243G>A	uc001qvl.2	-	12	1376	c.1347C>T	c.(1345-1347)TCC>TCT	p.S449S	PZP_uc009zgl.2_Silent_p.S318S	NM_002864	NP_002855			pregnancy-zone protein precursor											ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)	5						TTCCACTTAAGGAGAAAACAC	0.498													12	61					0	0	0.013537	0	0
GSG1	83445	broad.mit.edu	37	12	13243455	13243455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:13243455C>T	uc001rbn.2	-	2	519	c.346G>A	c.(346-348)GAA>AAA	p.E116K	GSG1_uc001rbj.2_Missense_Mutation_p.E103K|GSG1_uc001rbk.2_Missense_Mutation_p.E103K|GSG1_uc001rbl.2_Missense_Mutation_p.E103K|GSG1_uc001rbm.2_Missense_Mutation_p.E103K|GSG1_uc001rbo.2_Missense_Mutation_p.E116K|GSG1_uc001rbp.2_Missense_Mutation_p.E116K|GSG1_uc001rbq.1_Missense_Mutation_p.E116K	NM_001080555	NP_001074024	Q2KHT4	GSG1_HUMAN	germ cell associated 1 isoform 4	103						endoplasmic reticulum membrane|integral to membrane					0		Prostate(47;0.183)		BRCA - Breast invasive adenocarcinoma(232;0.15)		TCCACAGTTTCCTCACAGGAT	0.552													7	35					0	0	0.003080	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716319	13716319	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:13716319G>A	uc001rbt.2	-	13	4032	c.3853C>T	c.(3853-3855)CCG>TCG	p.P1285S		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1285	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GAATTAGTCGGGCTCTGAGGG	0.597													11	68					0	0	0.010729	0	0
ABCC9	10060	broad.mit.edu	37	12	22059109	22059109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:22059109C>T	uc001rfi.1	-	10	1589	c.1569G>A	c.(1567-1569)ATG>ATA	p.M523I	ABCC9_uc001rfh.2_Missense_Mutation_p.M523I|ABCC9_uc001rfj.1_Missense_Mutation_p.M523I	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	523	Cytoplasmic (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	ATAGTTCTTTCATTCTTGTTT	0.368													4	32					0	0	0.000602	0	0
ABCC9	10060	broad.mit.edu	37	12	22063888	22063888	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:22063888C>T	uc001rfi.1	-	7	1056	c.1036G>A	c.(1036-1038)GAA>AAA	p.E346K	ABCC9_uc001rfh.2_Missense_Mutation_p.E346K|ABCC9_uc001rfj.1_Missense_Mutation_p.E346K	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	346	Extracellular (Potential).|ABC transmembrane type-1 1.				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	TCAAGAAATTCCTTTGATGAG	0.368													8	39					0	0	0.006214	0	0
LRRK2	120892	broad.mit.edu	37	12	40702473	40702473	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:40702473C>T	uc001rmg.3	+	29	4285	c.4164C>T	c.(4162-4164)CTC>CTT	p.L1388L	LRRK2_uc009zjw.2_Silent_p.L226L|LRRK2_uc001rmi.2_Silent_p.L221L	NM_198578	NP_940980	Q5S007	LRRK2_HUMAN	leucine-rich repeat kinase 2	1388	Roc.				activation of MAPKK activity|determination of adult lifespan|exploration behavior|intracellular distribution of mitochondria|negative regulation of branching morphogenesis of a nerve|negative regulation of dendritic spine morphogenesis|negative regulation of neuroblast proliferation|negative regulation of neuron maturation|neuromuscular junction development|neuron death|peptidyl-serine phosphorylation|positive regulation of autophagy|positive regulation of dopamine receptor signaling pathway|positive regulation of programmed cell death|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein phosphorylation|positive regulation of protein ubiquitination|protein autophosphorylation|regulation of kidney size|regulation of locomotion|regulation of membrane potential|response to oxidative stress|small GTPase mediated signal transduction|tangential migration from the subventricular zone to the olfactory bulb	external side of mitochondrial outer membrane	ATP binding|GTP binding|GTP-dependent protein kinase activity|GTPase activator activity|MAP kinase kinase activity|protein homodimerization activity|tubulin binding			ovary(12)|stomach(5)|upper_aerodigestive_tract(2)|lung(2)|large_intestine(1)|urinary_tract(1)|pancreas(1)	24	all_cancers(12;0.00108)|Breast(8;0.218)	Lung NSC(34;0.0942)|all_lung(34;0.11)				AGAGAGATCTCGTCCTAAATG	0.358													4	22					0	0	0.009096	0	0
DDX23	9416	broad.mit.edu	37	12	49225073	49225073	+	Silent	SNP	T	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:49225073T>A	uc001rsm.2	-	16	2182	c.2091A>T	c.(2089-2091)GGA>GGT	p.G697G		NM_004818	NP_004809	Q9BUQ8	DDX23_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 23	697	Helicase C-terminal.					catalytic step 2 spliceosome|nucleoplasm|U5 snRNP	ATP binding|ATP-dependent RNA helicase activity|nucleic acid binding|protein binding			kidney(3)|ovary(1)|lung(1)|skin(1)	6						CCTGGCCTTTTCCACCGTGCA	0.512													18	78					0	0	0.008871	0	0
FAIM2	23017	broad.mit.edu	37	12	50295091	50295091	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:50295091C>T	uc001rvj.1	-	2	178	c.33G>A	c.(31-33)AAG>AAA	p.K11K	FAIM2_uc001rvi.1_5'UTR|FAIM2_uc001rvk.1_RNA	NM_012306	NP_036438	Q9BWQ8	FAIM2_HUMAN	Fas apoptotic inhibitory molecule 2	11					anti-apoptosis|apoptosis	cell junction|integral to membrane|postsynaptic membrane				large_intestine(1)|ovary(1)|skin(1)	3						TCCCAGGGGCCTTGTTAGCCA	0.597													5	32					0	0	0.000602	0	0
KRT74	121391	broad.mit.edu	37	12	52963682	52963682	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:52963682G>A	uc001sap.1	-	6	1143	c.1095C>T	c.(1093-1095)ATC>ATT	p.I365I		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	365	Rod.|Coil 2.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		GGATCCTCTGGATGAGCCGGT	0.592													12	42					0	0	0.003163	0	0
MAP3K12	7786	broad.mit.edu	37	12	53880233	53880233	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:53880233T>A	uc001sdm.1	-	4	618	c.520A>T	c.(520-522)ATC>TTC	p.I174F	MAP3K12_uc001sdn.1_Missense_Mutation_p.I207F	NM_006301	NP_006292	Q12852	M3K12_HUMAN	mitogen-activated protein kinase kinase kinase	174	Protein kinase.				histone phosphorylation|JNK cascade|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|protein autophosphorylation	cytosol|membrane fraction|plasma membrane	ATP binding|magnesium ion binding|MAP kinase kinase kinase activity|protein homodimerization activity|protein kinase binding			lung(2)|ovary(1)|breast(1)|skin(1)	5						TTGAAAGTGATGATGTTGGGG	0.587													6	46					0	0	0.001168	0	0
ITGA5	3678	broad.mit.edu	37	12	54799683	54799683	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:54799683G>A	uc001sga.2	-	10	1002	c.934C>T	c.(934-936)CGA>TGA	p.R312*	ITGA5_uc010sow.1_RNA|ITGA5_uc009znp.1_RNA	NM_002205	NP_002196	P08648	ITA5_HUMAN	integrin alpha 5 precursor	312	Extracellular (Potential).|FG-GAP 4.				angiogenesis|axon guidance|blood coagulation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte migration|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of vascular endothelial growth factor receptor signaling pathway|wound healing, spreading of epidermal cells	alphav-beta3 integrin-vitronectin complex|integrin complex|ruffle	platelet-derived growth factor receptor binding|receptor activity|vascular endothelial growth factor receptor 2 binding			ovary(2)	2						TAGAGGGATCGAATGTCTGAG	0.512													5	66					0	0	0.000602	0	0
OR6C2	341416	broad.mit.edu	37	12	55846693	55846693	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:55846693G>A	uc001sgz.1	+	1	696	c.696G>A	c.(694-696)AGG>AGA	p.R232R		NM_054105	NP_473446	Q9NZP2	OR6C2_HUMAN	olfactory receptor, family 6, subfamily C,	232	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2						TTCAGCAAAGGAAAAAGGCCT	0.413													10	75					0	0	0.010729	0	0
PAN2	9924	broad.mit.edu	37	12	56720705	56720705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:56720705G>A	uc001skx.2	-	7	1331	c.958C>T	c.(958-960)CCA>TCA	p.P320S	PAN2_uc001skw.2_5'Flank|PAN2_uc001skz.2_Missense_Mutation_p.P320S|PAN2_uc001sky.2_Missense_Mutation_p.P320S	NM_001127460	NP_001120932	Q504Q3	PAN2_HUMAN	PAN2 polyA specific ribonuclease subunit homolog	320					nuclear-transcribed mRNA catabolic process, nonsense-mediated decay|nuclear-transcribed mRNA poly(A) tail shortening|ubiquitin-dependent protein catabolic process	cytosol|nucleus	nucleic acid binding|poly(A)-specific ribonuclease activity|ubiquitin thiolesterase activity			ovary(2)|skin(2)|large_intestine(1)|breast(1)	6						ATATCGGCTGGGTTGGCCAGG	0.527													5	41					0	0	0.000602	0	0
RDH16	8608	broad.mit.edu	37	12	57351060	57351060	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:57351060C>T	uc001smi.3	-	1	359	c.187G>A	c.(187-189)GAG>AAG	p.E63K	RDH16_uc009zpa.2_Missense_Mutation_p.G4E|RDH16_uc010sqx.1_RNA	NM_003708	NP_003699	O75452	RDH16_HUMAN	retinol dehydrogenase 16	63	Cytoplasmic (Potential).				lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	binding|electron carrier activity|retinol dehydrogenase activity				0						GCTCCTTTCTCCGTCAGACAT	0.597													8	31					0	0	0.003080	0	0
MYO1A	4640	broad.mit.edu	37	12	57424050	57424050	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:57424050C>T	uc001smw.3	-	24	2778	c.2535G>A	c.(2533-2535)AGG>AGA	p.R845R	MYO1A_uc010sqz.1_Silent_p.R683R|MYO1A_uc009zpd.2_Silent_p.R845R	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	845					sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity	p.R845R(1)		skin(4)|ovary(2)|urinary_tract(1)	7						AGAGCTTTTCCCTCAGGATCT	0.557													12	45					0	0	0.013537	0	0
MYO1A	4640	broad.mit.edu	37	12	57430593	57430593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:57430593G>A	uc001smw.3	-	21	2480	c.2237C>T	c.(2236-2238)TCC>TTC	p.S746F	MYO1A_uc010sqz.1_Missense_Mutation_p.S584F|MYO1A_uc009zpd.2_Missense_Mutation_p.S746F	NM_005379	NP_005370	Q9UBC5	MYO1A_HUMAN	myosin IA	746	IQ 3.				sensory perception of sound|vesicle localization	brush border|cortical actin cytoskeleton|filamentous actin|lateral plasma membrane|microvillus|myosin complex	actin binding|ATP binding|calmodulin binding|motor activity			skin(4)|ovary(2)|urinary_tract(1)	7						CAATAACACGGATGCCTTTAT	0.453													18	87					0	0	0.010504	0	0
GRIP1	23426	broad.mit.edu	37	12	66923614	66923614	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:66923614G>A	uc001stk.2	-	5	740	c.499C>T	c.(499-501)CGA>TGA	p.R167*	GRIP1_uc010sta.1_Nonsense_Mutation_p.R111*|GRIP1_uc001stl.1_Nonsense_Mutation_p.R111*|GRIP1_uc001stm.2_Nonsense_Mutation_p.R167*	NM_021150	NP_066973	Q9Y3R0	GRIP1_HUMAN	glutamate receptor interacting protein 1	167	PDZ 2.				androgen receptor signaling pathway|intracellular signal transduction|positive regulation of transcription, DNA-dependent|synaptic transmission	cell junction|cytoplasmic membrane-bounded vesicle|cytosol|endoplasmic reticulum|postsynaptic membrane	androgen receptor binding|beta-catenin binding|protein C-terminus binding|receptor signaling complex scaffold activity|transcription coactivator activity			ovary(2)	2			GBM - Glioblastoma multiforme(2;0.00069)	GBM - Glioblastoma multiforme(28;0.0933)		CACCTACCTCGAATTACAAAA	0.244													11	48					0	0	0.013537	0	0
BEST3	144453	broad.mit.edu	37	12	70049133	70049133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:70049133C>T	uc001svg.2	-	10	1788	c.1561G>A	c.(1561-1563)GAT>AAT	p.D521N	BEST3_uc001svd.1_Intron|BEST3_uc001sve.1_Intron|BEST3_uc001svf.2_Missense_Mutation_p.D308N|BEST3_uc010stm.1_Missense_Mutation_p.D415N	NM_032735	NP_116124	Q8N1M1	BEST3_HUMAN	vitelliform macular dystrophy 2-like 3 isoform	521	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	chloride channel activity				0	Breast(13;2.31e-06)|Esophageal squamous(21;0.187)		Lung(24;0.000278)|OV - Ovarian serous cystadenocarcinoma(12;0.0019)|STAD - Stomach adenocarcinoma(21;0.00694)			GTAGCGGAATCATGGTGGTAG	0.557													19	110					0	0	0.008871	0	0
TRHDE	29953	broad.mit.edu	37	12	72866856	72866856	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:72866856G>A	uc001sxa.2	+	5	1375	c.1345G>A	c.(1345-1347)GAC>AAC	p.D449N		NM_013381	NP_037513	Q9UKU6	TRHDE_HUMAN	thyrotropin-releasing hormone degrading enzyme	449	Extracellular (Potential).				cell-cell signaling|proteolysis|signal transduction	integral to plasma membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding			ovary(2)|skin(1)	3						GTGGTTTGGTGACCTTGTGAC	0.373													18	114					0	0	0.006122	0	0
MYF5	4617	broad.mit.edu	37	12	81111089	81111089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:81111089G>A	uc001szg.2	+	1	382	c.247G>A	c.(247-249)GAT>AAT	p.D83N		NM_005593	NP_005584	P13349	MYF5_HUMAN	myogenic factor 5	83	Basic motif.				muscle cell fate commitment|positive regulation of muscle cell differentiation|skeletal muscle tissue development	nucleoplasm	DNA binding|protein heterodimerization activity|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CACCACCATGGATCGGCGGAA	0.617													4	18					0	0	0.000602	0	0
PLXNC1	10154	broad.mit.edu	37	12	94641880	94641880	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:94641880C>T	uc001tdc.2	+	13	2839	c.2590C>T	c.(2590-2592)CAA>TAA	p.Q864*		NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	864	Extracellular (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						AGTGAAAATTCAAGTATGTTT	0.498													5	29					0	0	0.000602	0	0
NT5DC3	51559	broad.mit.edu	37	12	104174101	104174101	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:104174101C>T	uc010swe.1	-	13	1412	c.1371G>A	c.(1369-1371)TGG>TGA	p.W457*		NM_001031701	NP_001026871	Q86UY8	NT5D3_HUMAN	5'-nucleotidase domain containing 3	457							hydrolase activity|metal ion binding			ovary(2)|skin(1)	3						TTTCCTTTTTCCACTCCTGCA	0.473													10	68					0	0	0.013537	0	0
RAD9B	144715	broad.mit.edu	37	12	110956480	110956480	+	Splice_Site	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:110956480G>T	uc001trf.3	+	7	734	c.596_splice	c.e7-1	p.D199_splice	RAD9B_uc001trg.3_Splice_Site_p.D199_splice|RAD9B_uc010sya.1_Splice_Site_p.D130_splice|RAD9B_uc001tre.3_Splice_Site_p.D127_splice|RAD9B_uc001trd.3_Splice_Site_p.D41_splice	NM_152442	NP_689655	Q6WBX8	RAD9B_HUMAN	RAD9 homolog B						cell cycle checkpoint|DNA repair|DNA replication	nucleoplasm	protein binding			pancreas(1)|skin(1)	2						ATATTAAACAGATTTGAGCAA	0.333													4	40					0.00909568	0.00968782	0.009096	1	0
ATXN2	6311	broad.mit.edu	37	12	111957770	111957770	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:111957770A>G	uc001tsj.2	-	8	1541	c.1379T>C	c.(1378-1380)CTG>CCG	p.L460P	ATXN2_uc001tsh.2_Missense_Mutation_p.L195P|ATXN2_uc001tsi.2_Missense_Mutation_p.L171P|ATXN2_uc001tsk.2_RNA|ATXN2_uc001tsm.1_Missense_Mutation_p.L195P	NM_002973	NP_002964	Q99700	ATX2_HUMAN	ataxin 2	460					cell death|cytoplasmic mRNA processing body assembly|regulation of translation|RNA metabolic process|RNA transport|stress granule assembly	nucleus|perinuclear region of cytoplasm|polysome|stress granule|trans-Golgi network	protein C-terminus binding|RNA binding			ovary(1)|breast(1)	2						ATCATTTTCCAGGGCCACTCG	0.418													3	63					0	0	0.004672	0	0
RPH3A	22895	broad.mit.edu	37	12	113314621	113314621	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:113314621C>T	uc010syl.1	+	13	1483	c.1121C>T	c.(1120-1122)CCC>CTC	p.P374L	RPH3A_uc001ttz.2_Missense_Mutation_p.P374L|RPH3A_uc001tty.2_Missense_Mutation_p.P370L|RPH3A_uc009zwe.1_Missense_Mutation_p.P370L|RPH3A_uc010sym.1_Missense_Mutation_p.P325L|RPH3A_uc001tua.2_Missense_Mutation_p.P134L	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	374	Pro-rich.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		CAGCCACCACCCCCAGAGGAG	0.597													5	32					0	0	0.001168	0	0
CCDC60	160777	broad.mit.edu	37	12	119909840	119909840	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:119909840C>T	uc001txe.2	+	3	677	c.212C>T	c.(211-213)GCT>GTT	p.A71V	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	71	Potential.									ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GGATATTTTGCTATTCTGAGG	0.443													11	76					0	0	0.013537	0	0
CCDC60	160777	broad.mit.edu	37	12	119960774	119960774	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:119960774C>T	uc001txe.2	+	10	1536	c.1071C>T	c.(1069-1071)AGC>AGT	p.S357S	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	357										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		GTGCAGAAAGCCACATCCAAC	0.488													19	112					0	0	0.008871	0	0
CCDC60	160777	broad.mit.edu	37	12	119978426	119978426	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:119978426G>A	uc001txe.2	+	14	2024	c.1559G>A	c.(1558-1560)CGA>CAA	p.R520Q	uc001txf.2_Intron	NM_178499	NP_848594	Q8IWA6	CCD60_HUMAN	coiled-coil domain containing 60	520										ovary(2)|upper_aerodigestive_tract(1)	3	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)			BRCA - Breast invasive adenocarcinoma(302;0.207)		CAGTTTGTGCGAGAACACATC	0.512													8	80					0	0	0.003080	0	0
GCN1L1	10985	broad.mit.edu	37	12	120575528	120575528	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:120575528T>G	uc001txo.2	-	49	6497	c.6484A>C	c.(6484-6486)AGC>CGC	p.S2162R		NM_006836	NP_006827	Q92616	GCN1L_HUMAN	GCN1 general control of amino-acid synthesis	2162					regulation of translation	ribosome	protein binding|translation factor activity, nucleic acid binding			ovary(4)	4	all_neural(191;0.0804)|Medulloblastoma(191;0.0922)					ACCTCAGGGCTGCGGGTGGCC	0.582													7	24					0	0	0.003080	0	0
AACS	65985	broad.mit.edu	37	12	125621227	125621227	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:125621227G>A	uc001uhc.2	+	17	1904	c.1698G>A	c.(1696-1698)GTG>GTA	p.V566V	AACS_uc001uhd.2_Intron|AACS_uc009zyh.2_RNA|AACS_uc009zyi.2_Silent_p.V164V	NM_023928	NP_076417	Q86V21	AACS_HUMAN	acetoacetyl-CoA synthetase	566					fatty acid metabolic process	cytosol	acetoacetate-CoA ligase activity|ATP binding			ovary(1)|liver(1)|central_nervous_system(1)	3	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;9.82e-05)|Epithelial(86;0.000642)|all cancers(50;0.00843)		TCGAGGAGGTGGAGGACAGCC	0.612													5	26					0	0	0.001168	0	0
TMEM132B	114795	broad.mit.edu	37	12	125834396	125834396	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr12:125834396G>A	uc001uhe.1	+	2	459	c.451G>A	c.(451-453)GAC>AAC	p.D151N		NM_052907	NP_443139	Q14DG7	T132B_HUMAN	transmembrane protein 132B	151	Extracellular (Potential).					integral to membrane				skin(11)|ovary(5)|large_intestine(1)|pancreas(1)|breast(1)	19	all_neural(191;0.101)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;0.000423)|Epithelial(86;0.00394)|all cancers(50;0.0362)		GGATGACAGTGACCTTACGGA	0.537													22	84					0	0	0.002780	0	0
C1QTNF9	338872	broad.mit.edu	37	13	24895823	24895823	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:24895823G>T	uc001upj.2	+	4	980	c.919G>T	c.(919-921)GGA>TGA	p.G307*	C1QTNF9_uc001upe.2_RNA	NM_178540	NP_848635	P0C862	C1T9A_HUMAN	C1q and tumor necrosis factor related protein 9	307	C1q.					collagen	hormone activity				0		all_cancers(29;3.55e-20)|all_epithelial(30;4.25e-17)|all_lung(29;1.04e-16)|Lung SC(185;0.0225)|Breast(139;0.052)		all cancers(112;0.00565)|Epithelial(112;0.027)|OV - Ovarian serous cystadenocarcinoma(117;0.115)|Lung(94;0.159)		GCAGGTGACAGGAGGAGAGAG	0.532													7	54					0.00448238	0.00478952	0.004482	1	0
FLT3	2322	broad.mit.edu	37	13	28578193	28578193	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:28578193G>A	uc001urw.2	-	24	3060	c.2978C>T	c.(2977-2979)TCG>TTG	p.S993L	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.S952L	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	993	Cytoplasmic (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	GTTCCTCTACGAATCTTCGAC	0.448			Mis|O		AML|ALL								8	44					0	0	0.010729	0	0
FLT1	2321	broad.mit.edu	37	13	28896930	28896930	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:28896930C>T	uc001usb.3	-	21	3235	c.2950G>A	c.(2950-2952)GAG>AAG	p.E984K	FLT1_uc010aap.2_5'Flank|FLT1_uc010aaq.2_Missense_Mutation_p.E109K|FLT1_uc001usa.3_Missense_Mutation_p.E202K	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	984	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	TACCTACCCTCCTCTTCCTCA	0.403													11	80					0	0	0.013537	0	0
FRY	10129	broad.mit.edu	37	13	32826065	32826065	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:32826065A>C	uc001utx.2	+	50	7717	c.7221A>C	c.(7219-7221)GAA>GAC	p.E2407D	FRY_uc010tdw.1_RNA|FRY_uc001uty.2_5'Flank	NM_023037	NP_075463	Q5TBA9	FRY_HUMAN	furry homolog	2407					regulation of transcription, DNA-dependent|transcription, DNA-dependent	integral to membrane				ovary(5)|large_intestine(1)|skin(1)	7		Lung SC(185;0.0271)		all cancers(112;4.81e-05)|Epithelial(112;0.000656)|OV - Ovarian serous cystadenocarcinoma(117;0.0123)|BRCA - Breast invasive adenocarcinoma(63;0.0295)|GBM - Glioblastoma multiforme(144;0.104)		GTGGCCAAGAAGTAGGATTGA	0.388													4	63					0	0	0.009096	0	0
DCLK1	9201	broad.mit.edu	37	13	36382405	36382405	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:36382405C>T	uc001uvf.2	-	14	2052	c.1819G>A	c.(1819-1821)GAC>AAC	p.D607N	DCLK1_uc001uve.3_Missense_Mutation_p.D300N|DCLK1_uc010teh.1_Missense_Mutation_p.D300N|DCLK1_uc010abk.2_Missense_Mutation_p.D127N	NM_004734	NP_004725	O15075	DCLK1_HUMAN	doublecortin-like kinase 1	607	Protein kinase.				cell differentiation|central nervous system development|endosome transport|intracellular signal transduction|response to virus	integral to plasma membrane	ATP binding|protein serine/threonine kinase activity|receptor signaling protein activity			stomach(6)|ovary(2)|skin(1)	9		Breast(139;0.0147)|Lung SC(185;0.0685)|Prostate(109;0.122)	KIRC - Kidney renal clear cell carcinoma(5;0.119)|Kidney(79;0.169)	all cancers(112;1.72e-06)|Epithelial(112;4.24e-05)|BRCA - Breast invasive adenocarcinoma(63;0.00159)|OV - Ovarian serous cystadenocarcinoma(117;0.0158)|GBM - Glioblastoma multiforme(144;0.0638)		GAAGGAAAGTCCACCTGCCCC	0.428													15	120					0	0	0.010504	0	0
FREM2	341640	broad.mit.edu	37	13	39422804	39422804	+	Missense_Mutation	SNP	G	A	A	rs143509403		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:39422804G>A	uc001uwv.2	+	8	6685	c.6376G>A	c.(6376-6378)GAT>AAT	p.D2126N	FREM2_uc001uww.2_Missense_Mutation_p.D212N	NM_207361	NP_997244	Q5SZK8	FREM2_HUMAN	FRAS1-related extracellular matrix protein 2	2126	Extracellular (Potential).|Calx-beta 4.				cell communication|homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(7)|pancreas(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	11		Lung NSC(96;1.04e-07)|Prostate(109;0.00384)|Breast(139;0.00396)|Lung SC(185;0.0565)|Hepatocellular(188;0.114)		all cancers(112;3.32e-07)|Epithelial(112;1.66e-05)|OV - Ovarian serous cystadenocarcinoma(117;0.00154)|BRCA - Breast invasive adenocarcinoma(63;0.00631)|GBM - Glioblastoma multiforme(144;0.0312)		CTCTGTCTCCGATTGTGAGTG	0.358													3	10					0	0	0.009096	0	0
SPERT	220082	broad.mit.edu	37	13	46287544	46287544	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:46287544C>T	uc001van.1	+	3	464	c.384C>T	c.(382-384)TTC>TTT	p.F128F	SPERT_uc001vao.2_Silent_p.F92F	NM_152719	NP_689932	Q8NA61	SPERT_HUMAN	spermatid associated	128						cytoplasmic membrane-bounded vesicle				central_nervous_system(1)|pancreas(1)	2		Breast(56;0.000819)|Lung NSC(96;0.00227)|Prostate(109;0.00703)|Lung SC(185;0.0367)|Hepatocellular(98;0.0556)	KIRC - Kidney renal clear cell carcinoma(16;0.234)	GBM - Glioblastoma multiforme(144;7.26e-05)		ACGAGATGTTCGTGTTCCAGG	0.632													8	44					0	0	0.004482	0	0
MYCBP2	23077	broad.mit.edu	37	13	77619581	77619581	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:77619581C>A	uc001vkf.2	-	84	13946	c.13855G>T	c.(13855-13857)GTT>TTT	p.V4619F	MYCBP2_uc010aev.2_Missense_Mutation_p.V4023F|MYCBP2_uc001vke.2_Missense_Mutation_p.V1236F	NM_015057	NP_055872	O75592	MYCB2_HUMAN	MYC binding protein 2	4619					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ligase activity|protein binding|zinc ion binding			ovary(4)|breast(4)|skin(3)|lung(2)|pancreas(1)	14		Breast(118;0.212)|Acute lymphoblastic leukemia(28;0.22)		GBM - Glioblastoma multiforme(99;0.109)		GGTGGATGAACAACATGGAGT	0.423													7	51					2.17888e-05	2.34071e-05	0.006214	1	0
RNF219	79596	broad.mit.edu	37	13	79191089	79191089	+	Silent	SNP	G	A	A	rs149298632		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:79191089G>A	uc001vkw.1	-	6	866	c.807C>T	c.(805-807)TCC>TCT	p.S269S	uc001vku.1_RNA|RNF219_uc010afb.1_Silent_p.S79S|RNF219_uc010afc.2_Intron	NM_024546	NP_078822	Q5W0B1	RN219_HUMAN	ring finger protein 219	269	Potential.						zinc ion binding			large_intestine(2)	2		Acute lymphoblastic leukemia(28;0.0279)|Breast(118;0.0848)		GBM - Glioblastoma multiforme(99;0.0414)		TCTGGCAAATGGAATTCATAG	0.438													9	56					0	0	0.004482	0	0
SLITRK1	114798	broad.mit.edu	37	13	84455007	84455007	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:84455007G>A	uc001vlk.2	-	1	1522	c.636C>T	c.(634-636)AAC>AAT	p.N212N		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	212	Extracellular (Potential).|LRRCT 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		AGTCCCAAGGGTTATCCTCTA	0.562													5	38					0	0	0.001984	0	0
SLITRK6	84189	broad.mit.edu	37	13	86369460	86369460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:86369460C>T	uc001vll.1	-	2	1643	c.1184G>A	c.(1183-1185)GGA>GAA	p.G395E	SLITRK6_uc010afe.1_Intron	NM_032229	NP_115605	Q9H5Y7	SLIK6_HUMAN	slit and trk like 6 precursor	395	Extracellular (Potential).|LRR 7.					integral to membrane				large_intestine(1)|ovary(1)|central_nervous_system(1)	3	all_neural(89;0.117)|Medulloblastoma(90;0.163)			GBM - Glioblastoma multiforme(99;0.0456)		ACGATTGTTTCCCAAGTGAAG	0.348													6	30					0	0	0.001168	0	0
SLITRK5	26050	broad.mit.edu	37	13	88330434	88330434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:88330434G>A	uc001vln.2	+	2	3010	c.2791G>A	c.(2791-2793)GAA>AAA	p.E931K	SLITRK5_uc010tic.1_Missense_Mutation_p.E690K	NM_015567	NP_056382	O94991	SLIK5_HUMAN	SLIT and NTRK-like family, member 5 precursor	931	Cytoplasmic (Potential).					integral to membrane				ovary(2)|pancreas(2)|central_nervous_system(1)	5	all_neural(89;0.101)|Medulloblastoma(90;0.163)					CAACCGGAACGAATATCTGGA	0.522													10	81					0	0	0.010729	0	0
GPC6	10082	broad.mit.edu	37	13	93879740	93879740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:93879740C>T	uc001vlt.2	+	1	663	c.31C>T	c.(31-33)CCC>TCC	p.P11S	GPC6_uc010tig.1_Missense_Mutation_p.P11S	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	11						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				TGTGATTCTTCCCCTCTTGGG	0.637											OREG0022460	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	11	45					0	0	0.013537	0	0
SLC15A1	6564	broad.mit.edu	37	13	99364143	99364143	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:99364143G>A	uc001vno.2	-	11	942	c.865C>T	c.(865-867)CCA>TCA	p.P289S		NM_005073	NP_005064	P46059	S15A1_HUMAN	solute carrier family 15 (oligopeptide	289	Helical; (Potential).				digestion|protein transport	integral to plasma membrane|membrane fraction	peptide:hydrogen symporter activity			ovary(1)	1	all_neural(89;0.101)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)				Cefadroxil(DB01140)|Ceftibuten(DB01415)|Cyclacillin(DB01000)	ATTGGGAGTGGAATATACAGG	0.517													10	66					0	0	0.013537	0	0
CLYBL	171425	broad.mit.edu	37	13	100517114	100517114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:100517114C>T	uc001vok.2	+	5	597	c.583C>T	c.(583-585)CTC>TTC	p.L195F	CLYBL_uc010tix.1_Missense_Mutation_p.L195F|CLYBL_uc010tiy.1_Missense_Mutation_p.L161F	NM_206808	NP_996531	Q8N0X4	CLYBL_HUMAN	citrate lyase beta like precursor	195					cellular aromatic compound metabolic process	citrate lyase complex|mitochondrion	citrate (pro-3S)-lyase activity|metal ion binding				0	all_neural(89;0.0837)|Medulloblastoma(90;0.18)|Lung SC(71;0.184)					TCAAGTAGGTCTCTTTCTAGA	0.438													9	75					0	0	0.006214	0	0
NALCN	259232	broad.mit.edu	37	13	101776979	101776979	+	Silent	SNP	G	A	A	rs79766279	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:101776979G>A	uc001vox.1	-	18	2361	c.2172C>T	c.(2170-2172)ACC>ACT	p.T724T		NM_052867	NP_443099	Q8IZF0	NALCN_HUMAN	voltage gated channel like 1	724	Cytoplasmic (Potential).					integral to membrane	sodium channel activity|voltage-gated ion channel activity			ovary(8)|breast(4)|skin(2)|pancreas(1)|central_nervous_system(1)	16	all_neural(89;0.0438)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)					TAGTGACTGCGGTCTCCTTTT	0.328													9	56					0	0	0.002450	0	0
TNFSF13B	10673	broad.mit.edu	37	13	108922354	108922354	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr13:108922354C>T	uc001vqr.2	+	1	378	c.111C>T	c.(109-111)CCC>CCT	p.P37P	TNFSF13B_uc010agj.2_Silent_p.P37P	NM_006573	NP_006564	Q9Y275	TN13B_HUMAN	tumor necrosis factor superfamily, member 13b	37	Cytoplasmic (Potential).				cell proliferation|immune response|signal transduction	extracellular space|integral to membrane|plasma membrane|soluble fraction	cytokine activity|tumor necrosis factor receptor binding				0	all_lung(23;0.000396)|all_neural(89;0.00256)|Medulloblastoma(90;0.00596)|Lung NSC(43;0.00902)|Lung SC(71;0.104)		all cancers(43;0.184)|BRCA - Breast invasive adenocarcinoma(86;0.19)			AGGAAAGCCCCTCTGTCCGAT	0.537													17	113					0	0	0.007413	0	0
OR11H6	122748	broad.mit.edu	37	14	20692782	20692782	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:20692782C>T	uc010tlc.1	+	1	914	c.914C>T	c.(913-915)CCC>CTC	p.P305L		NM_001004480	NP_001004480	Q8NGC7	O11H6_HUMAN	olfactory receptor, family 11, subfamily H,	305	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3	all_cancers(95;0.00108)		Epithelial(56;1.75e-06)|all cancers(55;1.22e-05)	GBM - Glioblastoma multiforme(265;0.0143)		TTCTTAAATCCCCTTATCTAT	0.418													12	65					0	0	0.010729	0	0
TOX4	9878	broad.mit.edu	37	14	21961098	21961098	+	Silent	SNP	C	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:21961098C>G	uc001waz.2	+	7	1426	c.1323C>G	c.(1321-1323)CCC>CCG	p.P441P	TOX4_uc001way.2_Silent_p.P311P|TOX4_uc001wba.2_RNA|TOX4_uc010tlu.1_Silent_p.P418P|TOX4_uc010tlv.1_Silent_p.P311P	NM_014828	NP_055643	O94842	TOX4_HUMAN	epidermal Langerhans cell protein LCP1	441	Gln/Pro-rich.					chromatin|nucleus|PTW/PP1 phosphatase complex	DNA binding|protein binding			ovary(1)	1	all_cancers(95;0.000465)		Epithelial(56;6.61e-06)|all cancers(55;5.15e-05)	GBM - Glioblastoma multiforme(265;0.0149)		TGCCTCCACCCCGACTACAGC	0.582													18	96					0	0	0.007413	0	0
Unknown	0	broad.mit.edu	37	14	22192091	22192091	+	RNA	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:22192091G>A	uc001wbn.2	+	1		c.84G>A								Homo sapiens mRNA for T cell receptor alpha variable 3, partial cds, clone: SEB 36.																		AGGTGGGCTGGAAAGGACCCC	0.582													15	63					0	0	0.004007	0	0
MYH7	4625	broad.mit.edu	37	14	23890224	23890224	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:23890224C>T	uc001wjx.2	-	26	3385	c.3279G>A	c.(3277-3279)AGG>AGA	p.R1093R	MIR208B_hsa-mir-208b|MI0005570_5'Flank	NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	1093	Potential.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		CATCCTCAATCCTTGCGTTGA	0.587													8	62					0	0	0.004482	0	0
MYH7	4625	broad.mit.edu	37	14	23900816	23900816	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:23900816C>T	uc001wjx.2	-	8	816	c.710G>A	c.(709-711)CGG>CAG	p.R237Q		NM_000257	NP_000248	P12883	MYH7_HUMAN	myosin, heavy chain 7, cardiac muscle, beta	237	Myosin head-like.				adult heart development|muscle filament sliding|regulation of heart rate|ventricular cardiac muscle tissue morphogenesis	focal adhesion|muscle myosin complex|myosin filament|nucleus|sarcomere	actin binding|actin-dependent ATPase activity|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(3)|skin(1)	4	all_cancers(95;2.54e-05)			GBM - Glioblastoma multiforme(265;0.00725)		GTTGTCGTTCCGGACGGTCTT	0.597													8	103					0	0	0.003080	0	0
TSSK4	283629	broad.mit.edu	37	14	24676702	24676702	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:24676702C>T	uc001wng.2	+	3	959	c.791C>T	c.(790-792)TCC>TTC	p.S264F	TM9SF1_uc010tob.1_Intron|TSSK4_uc001wne.2_Missense_Mutation_p.S188F|TSSK4_uc001wnf.2_Missense_Mutation_p.S194F|TSSK4_uc001wnh.2_Missense_Mutation_p.S274F	NM_174944	NP_777604	Q6SA08	TSSK4_HUMAN	testis-specific serine kinase 4	264	Protein kinase.				cell differentiation|multicellular organismal development|positive regulation of CREB transcription factor activity|spermatogenesis		ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity				0				GBM - Glioblastoma multiforme(265;0.018)		CATACCATCTCCCAGGAGTGC	0.532													11	36					0	0	0.008291	0	0
HEATR5A	25938	broad.mit.edu	37	14	31827966	31827966	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:31827966G>A	uc001wrf.3	-	10	1486	c.1409C>T	c.(1408-1410)TCG>TTG	p.S470L	HEATR5A_uc010ami.2_Missense_Mutation_p.S368L|HEATR5A_uc001wrg.1_Missense_Mutation_p.S352L|HEATR5A_uc010tpk.1_Missense_Mutation_p.S763L	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	757							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CTCATAAATCGAATAAGGGTC	0.403													20	58					0	0	0.008871	0	0
Unknown	0	broad.mit.edu	37	14	36840694	36840694	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:36840694G>A	uc001wtp.2	+	1	325	c.76G>A	c.(76-78)GAT>AAT	p.D26N		NM_199286	NP_954980			stella																		TTCCCGGGACGATTCAGGGGC	0.478													4	30					0	0	0.009096	0	0
ARID4A	5926	broad.mit.edu	37	14	58813764	58813764	+	Silent	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:58813764A>G	uc001xdp.2	+	14	1355	c.1101A>G	c.(1099-1101)CAA>CAG	p.Q367Q	ARID4A_uc001xdo.2_Silent_p.Q367Q|ARID4A_uc001xdq.2_Silent_p.Q367Q|ARID4A_uc010apg.1_Silent_p.Q45Q	NM_002892	NP_002883	P29374	ARI4A_HUMAN	retinoblastoma-binding protein 1 isoform I	367	ARID.				negative regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	transcriptional repressor complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(3)|skin(2)|lung(1)	6						TATGGAAGCAAATTTATATGG	0.264													7	28					0	0	0.006214	0	0
SIX4	51804	broad.mit.edu	37	14	61180337	61180337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:61180337G>A	uc001xfc.2	-	3	2134	c.2134C>T	c.(2134-2136)CGT>TGT	p.R712C		NM_017420	NP_059116	Q9UIU6	SIX4_HUMAN	sine oculis homeobox homolog 4	712						nucleus				breast(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(108;0.0275)		AGAACCAAACGATGTTCTTGG	0.443													11	32					0	0	0.010729	0	0
KCNH5	27133	broad.mit.edu	37	14	63175152	63175152	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:63175152C>T	uc001xfx.2	-	11	2092	c.2041G>A	c.(2041-2043)GAT>AAT	p.D681N	KCNH5_uc001xfy.2_3'UTR	NM_139318	NP_647479	Q8NCM2	KCNH5_HUMAN	potassium voltage-gated channel, subfamily H,	681	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent	integral to membrane	calmodulin binding|two-component sensor activity|voltage-gated potassium channel activity			ovary(4)|skin(4)|central_nervous_system(1)	9				OV - Ovarian serous cystadenocarcinoma(108;0.00958)|BRCA - Breast invasive adenocarcinoma(234;0.168)		TTCTTCACATCACTGATCTTA	0.463													13	43					0	0	0.013537	0	0
FAM71D	161142	broad.mit.edu	37	14	67671581	67671581	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:67671581G>A	uc001xja.1	+	5	941	c.687G>A	c.(685-687)AGG>AGA	p.R229R	FAM71D_uc010aqn.1_RNA	NM_173526	NP_775797	Q8N9W8	FA71D_HUMAN	hypothetical protein LOC161142	229										ovary(1)	1		all_hematologic(31;0.0116)		all cancers(60;0.00107)|BRCA - Breast invasive adenocarcinoma(234;0.00993)|OV - Ovarian serous cystadenocarcinoma(108;0.012)		AACATGTCAGGGACAGCATAG	0.502													9	51					0	0	0.006214	0	0
ADAM21	8747	broad.mit.edu	37	14	70924646	70924646	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:70924646G>A	uc001xmd.2	+	1	430	c.430G>A	c.(430-432)GAA>AAA	p.E144K		NM_003813	NP_003804	Q9UKJ8	ADA21_HUMAN	ADAM metallopeptidase domain 21 preproprotein	144					proteolysis|single fertilization	integral to membrane	metalloendopeptidase activity|zinc ion binding			pancreas(1)|skin(1)	2				all cancers(60;0.00326)|BRCA - Breast invasive adenocarcinoma(234;0.00646)|OV - Ovarian serous cystadenocarcinoma(108;0.0401)		CCTCACTTATGAAATTGAACC	0.438													10	58					0	0	0.008291	0	0
YLPM1	56252	broad.mit.edu	37	14	75266252	75266252	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:75266252G>A	uc001xqj.3	+	5	4376	c.4252G>A	c.(4252-4254)GAA>AAA	p.E1418K	YLPM1_uc001xql.3_RNA	NM_019589	NP_062535	P49750	YLPM1_HUMAN	YLP motif containing 1	1223					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear speck				ovary(2)|pancreas(1)	3			KIRC - Kidney renal clear cell carcinoma(43;0.238)	BRCA - Breast invasive adenocarcinoma(234;0.00162)		CCCCATGGCGGAACATATGCC	0.498													17	152					0	0	0.006122	0	0
EML5	161436	broad.mit.edu	37	14	89093244	89093244	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:89093244C>T	uc001xxg.2	-	35	4864	c.4678G>A	c.(4678-4680)GGG>AGG	p.G1560R	EML5_uc001xxf.2_Missense_Mutation_p.G347R|EML5_uc001xxh.1_Missense_Mutation_p.G691R	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	1552						cytoplasm|microtubule				ovary(3)	3						CTCAGTAGCCCTTTTTTGCTA	0.468													5	47					0	0	0.000602	0	0
RPS6KA5	9252	broad.mit.edu	37	14	91386649	91386649	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:91386649A>G	uc001xys.2	-	7	922	c.707T>C	c.(706-708)GTT>GCT	p.V236A	RPS6KA5_uc010twi.1_Missense_Mutation_p.V157A|RPS6KA5_uc001xyt.2_Missense_Mutation_p.V236A|RPS6KA5_uc010att.1_RNA	NM_004755	NP_004746	O75582	KS6A5_HUMAN	ribosomal protein S6 kinase, polypeptide 5	236	Protein kinase 1.				axon guidance|epidermal growth factor receptor signaling pathway|histone phosphorylation|innate immune response|interleukin-1-mediated signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|nerve growth factor receptor signaling pathway|positive regulation of histone acetylation|positive regulation of histone phosphorylation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytoplasm|nucleoplasm	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			ovary(1)	1		all_cancers(154;0.0148)|Melanoma(154;0.099)|all_epithelial(191;0.146)		Epithelial(152;0.182)|BRCA - Breast invasive adenocarcinoma(234;0.201)		CCACCAGTCAACTGCCTATAA	0.294													24	80					0	0	0.004656	0	0
TC2N	123036	broad.mit.edu	37	14	92265364	92265364	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:92265364C>T	uc001xzu.3	-	6	797	c.606G>A	c.(604-606)AGG>AGA	p.R202R	TC2N_uc001xzt.3_Silent_p.R202R|TC2N_uc010auc.2_Silent_p.R202R|TC2N_uc001xzv.3_Silent_p.R202R	NM_001128595	NP_001122067	Q8N9U0	TAC2N_HUMAN	tandem C2 domains, nuclear	202						nucleus				upper_aerodigestive_tract(1)	1				COAD - Colon adenocarcinoma(157;0.218)		GAGAATTTTTCCTTGAAGAAG	0.323													16	42					0	0	0.007413	0	0
KIAA1409	57578	broad.mit.edu	37	14	94120324	94120324	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:94120324G>A	uc001ybv.1	+	36	5970	c.5887G>A	c.(5887-5889)GAC>AAC	p.D1963N	KIAA1409_uc001ybs.1_Missense_Mutation_p.D1941N	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	2118						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		GTCTCTGATGGACTTCAATGA	0.512													14	141					0	0	0.004007	0	0
DICER1	23405	broad.mit.edu	37	14	95573953	95573953	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:95573953G>A	uc001ydw.2	-	18	2978	c.2796C>T	c.(2794-2796)ATC>ATT	p.I932I	DICER1_uc010avh.1_5'Flank|DICER1_uc001ydv.2_Silent_p.I922I|DICER1_uc001ydx.2_Silent_p.I932I	NM_030621	NP_085124	Q9UPY3	DICER_HUMAN	dicer1	932	PAZ.				negative regulation of Schwann cell proliferation|negative regulation of transcription from RNA polymerase II promoter|nerve development|neuron projection morphogenesis|peripheral nervous system myelin formation|positive regulation of myelination|positive regulation of Schwann cell differentiation|pre-miRNA processing|production of siRNA involved in RNA interference|targeting of mRNA for destruction involved in RNA interference	cytosol|RNA-induced silencing complex	ATP binding|ATP-dependent helicase activity|double-stranded RNA binding|metal ion binding|protein binding|ribonuclease III activity			skin(2)|ovary(1)|pancreas(1)|lung(1)	5		all_cancers(154;0.0621)|all_epithelial(191;0.223)		Epithelial(152;0.211)|COAD - Colon adenocarcinoma(157;0.215)		ACCTTGGAATGATAACGGCAT	0.284			Mis F|N			pleuropulmonary blastoma			DICER_1_syndrome_|Familial_Multinodular_Goiter_				8	67					0	0	0.003080	0	0
TCL6	27004	broad.mit.edu	37	14	96135887	96135887	+	Splice_Site	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:96135887G>A	uc001yeq.2	+	5	1661	c.192_splice	c.e5-1	p.W64_splice	TCL6_uc001yep.1_Splice_Site|TCL6_uc001yes.2_3'UTR|TCL6_uc001yet.1_Splice_Site_p.R6_splice|TCL6_uc001yeu.2_Splice_Site|TCL6_uc001yev.2_3'UTR|TCL1B_uc001yew.2_Splice_Site|TCL1B_uc001yex.2_Splice_Site|TCL1B_uc010avj.2_Intron|TCL6_uc010avk.1_5'Flank	NM_020554	NP_065579			SubName: Full=T-cell leukemia/lymphoma 6 ORF163;												0		all_cancers(154;0.103)		Epithelial(152;0.0655)|all cancers(159;0.149)|BRCA - Breast invasive adenocarcinoma(234;0.206)|COAD - Colon adenocarcinoma(157;0.207)		gttttctacaggttagaagca	0			T	TRA@	T-ALL								4	30					0	0	0.000602	0	0
TCL1B	9623	broad.mit.edu	37	14	96157638	96157638	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:96157638C>T	uc001yez.2	+	3	409	c.367C>T	c.(367-369)CAG>TAG	p.Q123*	TCL1B_uc001yew.2_RNA|TCL1B_uc001yex.2_RNA|TCL1B_uc010avj.2_RNA|TCL1B_uc001yfa.2_Nonsense_Mutation_p.Q123*	NM_004918	NP_004909	O95988	TCL1B_HUMAN	T-cell leukemia/lymphoma 1B	123										ovary(1)	1		all_cancers(154;0.103)		COAD - Colon adenocarcinoma(157;0.205)|Epithelial(152;0.248)		CCTAACATATCAGCCGGAGAG	0.552													7	48					0	0	0.003080	0	0
BDKRB1	623	broad.mit.edu	37	14	96730842	96730842	+	Silent	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:96730842T>C	uc001yfh.2	+	3	1031	c.823T>C	c.(823-825)TTA>CTA	p.L275L	BDKRB1_uc010avn.2_Intron	NM_000710	NP_000701	P46663	BKRB1_HUMAN	bradykinin receptor B1	275	Extracellular (Potential).				elevation of cytosolic calcium ion concentration	endoplasmic reticulum|integral to plasma membrane	bradykinin receptor activity			ovary(3)	3		all_cancers(154;0.0677)|Melanoma(154;0.155)|all_epithelial(191;0.179)		COAD - Colon adenocarcinoma(157;0.208)|Epithelial(152;0.226)		CCTGGAATTCTTATTCCAGGT	0.552													11	61					0	0	0.010729	0	0
ATG2B	55102	broad.mit.edu	37	14	96800178	96800178	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:96800178C>T	uc001yfi.2	-	8	1419	c.1054G>A	c.(1054-1056)GAT>AAT	p.D352N		NM_018036	NP_060506	Q96BY7	ATG2B_HUMAN	ATG2 autophagy related 2 homolog B	352										ovary(1)|kidney(1)|skin(1)	3		all_cancers(154;0.0462)|all_epithelial(191;0.123)|Melanoma(154;0.155)		Epithelial(152;0.21)|COAD - Colon adenocarcinoma(157;0.244)		TTTTTCCTATCTTTATTAGCT	0.343													4	55					0	0	0.000602	0	0
DLK1	8788	broad.mit.edu	37	14	101201188	101201188	+	Silent	SNP	C	T	T	rs12975		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:101201188C>T	uc001yhs.3	+	5	1260	c.1107C>T	c.(1105-1107)ATC>ATT	p.I369I	DLK1_uc001yhu.3_Silent_p.I296I	NM_003836	NP_003827	P80370	DLK1_HUMAN	delta-like 1 homolog precursor	369	Cytoplasmic (Potential).				multicellular organismal development	extracellular space|integral to membrane|soluble fraction				ovary(2)|breast(1)|skin(1)	4		Melanoma(154;0.155)				CCGAGAAGATCGACATGACCA	0.557													18	47					0	0	0.006122	0	0
TECPR2	9895	broad.mit.edu	37	14	102901109	102901109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:102901109C>T	uc001ylw.1	+	9	2103	c.1955C>T	c.(1954-1956)TCC>TTC	p.S652F	TECPR2_uc010awl.2_Missense_Mutation_p.S652F|TECPR2_uc010txx.1_Intron	NM_014844	NP_055659	O15040	TCPR2_HUMAN	tectonin beta-propeller repeat containing 2	652							protein binding			lung(1)|central_nervous_system(1)|skin(1)	3						ACTGTGCCTTCCAGCCTCAGC	0.602													5	21					0	0	0.001168	0	0
RCOR1	23186	broad.mit.edu	37	14	103167667	103167667	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:103167667G>A	uc001ymb.2	+	4	489	c.489G>A	c.(487-489)CAG>CAA	p.Q163Q		NM_015156	NP_055971	Q9UKL0	RCOR1_HUMAN	REST corepressor 1	163	Interaction with HDAC1.|ELM2.				blood coagulation|histone H4 deacetylation|interspecies interaction between organisms	transcriptional repressor complex	protein binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription|transcription regulatory region DNA binding			ovary(1)	1						ACATGGAACAGGTAATATCAT	0.323													4	48					0	0	0.000602	0	0
KIF26A	26153	broad.mit.edu	37	14	104624133	104624133	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:104624133C>T	uc001yos.3	+	4	777	c.777C>T	c.(775-777)GTC>GTT	p.V259V		NM_015656	NP_056471	Q9ULI4	KI26A_HUMAN	kinesin family member 26A	259					blood coagulation|enteric nervous system development|microtubule-based movement|negative regulation of signal transduction|regulation of cell growth by extracellular stimulus	cytosol|microtubule	ATP binding|microtubule binding|microtubule motor activity			pancreas(1)	1		all_cancers(154;0.109)|Melanoma(154;0.0525)|all_epithelial(191;0.0767)	Epithelial(46;0.152)	Epithelial(152;0.161)		CAGACACGGTCCGAGAATGCC	0.701													6	16					0	0	0.001984	0	0
ADAM6	8755	broad.mit.edu	37	14	106725194	106725194	+	RNA	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:106725194C>T	uc010tyt.1	-	588		c.18353G>A								Parts of antibodies, mostly variable regions.												0						CTTCCCCTCACTGTGTCTTTC	0.552													16	135					0	0	0.003163	0	0
ADAM6	8755	broad.mit.edu	37	14	106757778	106757778	+	RNA	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:106757778C>T	uc010tyt.1	-	472		c.16287G>A								Parts of antibodies, mostly variable regions.												0						TAGGATTTTTCGTCATTCGAA	0.532													11	40					0	0	0.010729	0	0
ADAM6	8755	broad.mit.edu	37	14	106791043	106791043	+	RNA	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:106791043G>A	uc010tyt.1	-	386		c.14575C>T								Parts of antibodies, mostly variable regions.												0						TCAGCTCTCAGGCTGTTCATT	0.507													50	134					0	0	0.014410	0	0
ADAM6	8755	broad.mit.edu	37	14	106849116	106849116	+	RNA	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:106849116G>A	uc010tyt.1	-	291		c.11936C>T								Parts of antibodies, mostly variable regions.												0						TAGCAACAAGGAAAACCCAGC	0.483													10	44					0	0	0.001855	0	0
ADAM6	8755	broad.mit.edu	37	14	107083466	107083466	+	RNA	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:107083466G>A	uc010tyt.1	-	113		c.5327C>T								Parts of antibodies, mostly variable regions.												0						TACTGATGGAGCCACCAGAGA	0.587													16	40					0	0	0.014323	0	0
ADAM6	8755	broad.mit.edu	37	14	107178856	107178856	+	RNA	SNP	G	A	A	rs145906311	by1000genomes	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr14:107178856G>A	uc010tyt.1	-	32		c.2382C>T								Parts of antibodies, mostly variable regions.												0						TGTCCACAGGGTCCATGTTGG	0.512													9	157					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	15	20193368	20193368	+	RNA	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:20193368C>T	uc010tyv.1	-	1		c.5G>A								Homo sapiens immunoglobulin heavy chain leader and variable region mRNA, partial cds.																		GCCCAAACTCCATGGTGAGCC	0.512													16	68					0	0	0.004990	0	0
Unknown	0	broad.mit.edu	37	15	20644055	20644055	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:20644055G>A	uc001ytg.2	-	23	3424	c.2715C>T	c.(2713-2715)TTC>TTT	p.F905F	uc010tyx.1_RNA|uc001yth.3_Silent_p.F905F					RecName: Full=Putative HERC2-like protein 3;																		CGGAATCAGGGAAGTAGTCCT	0.592													5	12					0	0	0.001168	0	0
SCG5	6447	broad.mit.edu	37	15	32935871	32935872	+	Missense_Mutation	DNP	TT	CC	CC			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:32935871_32935872TT>CC	uc001zha.2	+	2	195_196	c.78_79TT>CC	c.(76-81)GCTTAC>GCCCAC	p.Y27H	SCG5_uc001zgz.2_Missense_Mutation_p.Y27H	NM_001144757	NP_001138229	P05408	7B2_HUMAN	secretogranin V isoform 1	27					intracellular protein transport|neuropeptide signaling pathway|peptide hormone processing|regulation of hormone secretion	extracellular region|stored secretory granule	enzyme inhibitor activity|GTP binding|unfolded protein binding				0		all_lung(180;7.32e-08)		all cancers(64;6.48e-17)|Epithelial(43;1.23e-11)|GBM - Glioblastoma multiforme(186;1.39e-05)|BRCA - Breast invasive adenocarcinoma(123;0.0212)		CAGCATTTGCTTACAGCCCCCG	0.535													16	68					0	0	0.004672	0	0
RYR3	6263	broad.mit.edu	37	15	33765704	33765704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:33765704C>T	uc001zhi.2	+	2	206	c.136C>T	c.(136-138)CGC>TGC	p.R46C	RYR3_uc010bar.2_Missense_Mutation_p.R46C	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	46	Cytoplasmic (By similarity).				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ACTTGGGAATCGCCTGTGCTT	0.547													7	45					0	0	0.003080	0	0
RYR3	6263	broad.mit.edu	37	15	34080525	34080525	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:34080525G>A	uc001zhi.2	+	67	9766	c.9696G>A	c.(9694-9696)GAG>GAA	p.E3232E	RYR3_uc010bar.2_Silent_p.E3232E	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	3232					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		CGGTGCAGGAGGAGGAGCAGT	0.562													16	71					0	0	0.008871	0	0
RYR3	6263	broad.mit.edu	37	15	34130703	34130703	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:34130703G>A	uc001zhi.2	+	89	12592	c.12522G>A	c.(12520-12522)AAG>AAA	p.K4174K	RYR3_uc010bar.2_Silent_p.K4169K	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	4174					cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		ACGTGAAAAAGATGACTGCGA	0.502													9	18					0	0	0.006214	0	0
TMEM62	80021	broad.mit.edu	37	15	43452952	43452952	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:43452952C>T	uc001zqr.2	+	10	1535	c.1256C>T	c.(1255-1257)CCC>CTC	p.P419L	TMEM62_uc010bda.2_Missense_Mutation_p.P289L|TMEM62_uc001zqt.2_5'UTR	NM_024956	NP_079232	Q0P6H9	TMM62_HUMAN	transmembrane protein 62	419						integral to membrane				ovary(1)|breast(1)	2		all_cancers(109;1.16e-10)|all_epithelial(112;2.01e-09)|Lung NSC(122;8.91e-07)|all_lung(180;8.8e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;4.23e-07)		AGTTTTGATCCCCTGGCATCA	0.318													10	34					0	0	0.013537	0	0
SPG11	80208	broad.mit.edu	37	15	44944342	44944342	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:44944342G>A	uc001ztx.2	-	5	1023	c.992C>T	c.(991-993)TCC>TTC	p.S331F	SPG11_uc010ueh.1_Missense_Mutation_p.S331F|SPG11_uc010uei.1_Missense_Mutation_p.S331F|SPG11_uc001zua.1_Missense_Mutation_p.S331F	NM_025137	NP_079413	Q96JI7	SPTCS_HUMAN	spatacsin isoform 1	331	Extracellular (Potential).				cell death	cytosol|integral to membrane|nucleus	protein binding			ovary(4)|skin(1)	5		all_cancers(109;1.29e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;1.34e-07)|all_lung(180;1.21e-06)|Melanoma(134;0.0122)		all cancers(107;2.93e-22)|GBM - Glioblastoma multiforme(94;1.55e-06)|COAD - Colon adenocarcinoma(120;0.0432)|Colorectal(105;0.0484)|Lung(196;0.104)|LUSC - Lung squamous cell carcinoma(244;0.214)		AATTTGGAAGGAAAACTTGGC	0.358													16	37					0	0	0.006122	0	0
TRPM7	54822	broad.mit.edu	37	15	50926735	50926735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:50926735G>A	uc001zyt.3	-	8	1115	c.851C>T	c.(850-852)CCT>CTT	p.P284L	TRPM7_uc010bew.1_Missense_Mutation_p.P284L	NM_017672	NP_060142	Q96QT4	TRPM7_HUMAN	transient receptor potential cation channel,	284	Cytoplasmic (Potential).				cell death	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein serine/threonine kinase activity			ovary(4)|stomach(3)|breast(1)|central_nervous_system(1)|skin(1)	10				all cancers(107;0.000819)|GBM - Glioblastoma multiforme(94;0.0045)		TGCCACCACAGGGACACCCTG	0.403													5	14					0	0	0.001168	0	0
RAB27A	5873	broad.mit.edu	37	15	55520877	55520877	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:55520877A>C	uc002aco.2	-	5	506	c.273T>G	c.(271-273)GAT>GAG	p.D91E	RAB27A_uc002acr.2_Missense_Mutation_p.D91E|RAB27A_uc002acp.2_Missense_Mutation_p.D91E|RAB27A_uc002acq.2_Missense_Mutation_p.D91E	NM_183234	NP_899057	P51159	RB27A_HUMAN	Ras-related protein Rab-27A	91					small GTPase mediated signal transduction	dendrite|exocytic vesicle|late endosome|lysosome|melanosome	GTP binding|GTPase activity			ovary(1)	1				all cancers(107;0.0273)|GBM - Glioblastoma multiforme(80;0.0993)		AACCCATAGCATCTCTGAAGA	0.408													18	33					0	0	0.008871	0	0
CGNL1	84952	broad.mit.edu	37	15	57744421	57744421	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:57744421A>G	uc002aeg.2	+	6	2064	c.1988A>G	c.(1987-1989)GAG>GGG	p.E663G	CGNL1_uc010bfw.2_Missense_Mutation_p.E663G	NM_032866	NP_116255	Q0VF96	CGNL1_HUMAN	cingulin-like 1	663	Potential.					myosin complex|tight junction	motor activity			skin(6)|ovary(4)|central_nervous_system(1)	11				all cancers(107;0.121)|GBM - Glioblastoma multiforme(80;0.186)		GAAAAGGTGGAGGAGAACTCC	0.493													10	20					0	0	0.008291	0	0
ALDH1A2	8854	broad.mit.edu	37	15	58287308	58287308	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:58287308C>T	uc002aex.2	-	5	581	c.523G>A	c.(523-525)GAA>AAA	p.E175K	ALDH1A2_uc002aey.2_Missense_Mutation_p.E175K|ALDH1A2_uc010ugv.1_Missense_Mutation_p.E154K|ALDH1A2_uc010ugw.1_Missense_Mutation_p.E146K|ALDH1A2_uc002aew.2_Missense_Mutation_p.E79K	NM_003888	NP_003879	O94788	AL1A2_HUMAN	aldehyde dehydrogenase 1A2 isoform 1	175					negative regulation of cell proliferation|neural tube development|response to cytokine stimulus	nucleus	3-chloroallyl aldehyde dehydrogenase activity|retinal binding|retinal dehydrogenase activity			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(80;0.152)|all cancers(107;0.18)	NADH(DB00157)|Tretinoin(DB00755)|Vitamin A(DB00162)	CCAATGGGTTCATGTCTTGTA	0.383													23	80					0	0	0.006320	0	0
DENND4A	10260	broad.mit.edu	37	15	66044926	66044926	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:66044926C>T	uc002aph.2	-	4	730	c.352G>A	c.(352-354)GAA>AAA	p.E118K	DENND4A_uc002api.2_Missense_Mutation_p.E118K|DENND4A_uc002apj.3_Missense_Mutation_p.E118K|DENND4A_uc010ujj.1_Missense_Mutation_p.E118K	NM_005848	NP_005839	Q7Z401	MYCPP_HUMAN	DENN/MADD domain containing 4A isoform 2	118	MABP.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|protein binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4						TGAATAATTTCACAACCCTGT	0.323													3	6					0	0	0.009096	0	0
MAP2K1	5604	broad.mit.edu	37	15	66729162	66729163	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:66729162_66729163CC>TT	uc010bhq.2	+	3	845_846	c.370_371CC>TT	c.(370-372)CCG>TTG	p.P124L	MAP2K1_uc010ujp.1_Missense_Mutation_p.P102L	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	124	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						GTGCAACTCTCCGTACATCGTG	0.51									Cardiofaciocutaneous_syndrome				15	37					0	0	0.004672	0	0
CORO2B	10391	broad.mit.edu	37	15	69011843	69011843	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:69011843C>T	uc002arj.3	+	11	1292	c.1263C>T	c.(1261-1263)GTC>GTT	p.V421V	CORO2B_uc010bic.2_Silent_p.V416V|CORO2B_uc002ark.2_Silent_p.V188V	NM_006091	NP_006082	Q9UQ03	COR2B_HUMAN	coronin, actin binding protein, 2B	421					actin cytoskeleton organization	actin cytoskeleton|cytoplasm|membrane	actin filament binding			ovary(3)|skin(2)|large_intestine(1)	6						GTGTTGTGGTCAACGGAATAG	0.408													17	34					0	0	0.004007	0	0
CHRNA3	1136	broad.mit.edu	37	15	78893897	78893897	+	Missense_Mutation	SNP	C	T	T	rs140801923		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:78893897C>T	uc002bec.2	-	5	1273	c.1087G>A	c.(1087-1089)GAG>AAG	p.E363K	CHRNA3_uc002bea.2_RNA|CHRNA3_uc002beb.2_Missense_Mutation_p.E363K	NM_000743	NP_000734	P32297	ACHA3_HUMAN	cholinergic receptor, nicotinic, alpha 3	363	Cytoplasmic (Potential).				activation of transmembrane receptor protein tyrosine kinase activity|behavioral response to nicotine|locomotory behavior|regulation of acetylcholine secretion|regulation of dendrite morphogenesis|regulation of excitatory postsynaptic membrane potential|regulation of smooth muscle contraction|synaptic transmission involved in micturition|synaptic transmission, cholinergic	cell junction|dendrite|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic density|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(3)|ovary(1)	4						GCGTTGCCCTCGTTGCTTGTT	0.572													17	38					0	0	0.004007	0	0
SLC28A1	9154	broad.mit.edu	37	15	85431019	85431019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:85431019G>A	uc002blg.2	+	3	230	c.28G>A	c.(28-30)GAG>AAG	p.E10K	SLC28A1_uc010upd.1_5'UTR|SLC28A1_uc010bnb.2_Missense_Mutation_p.E10K|SLC28A1_uc010upe.1_Missense_Mutation_p.E10K|SLC28A1_uc010upf.1_Missense_Mutation_p.E10K|SLC28A1_uc010upg.1_Missense_Mutation_p.E10K|SLC28A1_uc002blf.2_Missense_Mutation_p.E10K	NM_004213	NP_004204	O00337	S28A1_HUMAN	solute carrier family 28, member 1 isoform 1	10					nucleobase, nucleoside and nucleotide metabolic process	integral to plasma membrane|membrane fraction	nucleoside binding			skin(2)|ovary(1)	3			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GAGACGAAGAGAGTCCATCTC	0.582													15	41					0	0	0.003163	0	0
MCTP2	55784	broad.mit.edu	37	15	95022241	95022241	+	Missense_Mutation	SNP	G	A	A	rs141407505	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:95022241G>A	uc002btj.2	+	22	2680	c.2615G>A	c.(2614-2616)CGG>CAG	p.R872Q	MCTP2_uc010boj.2_Missense_Mutation_p.R601Q|MCTP2_uc010bok.2_Missense_Mutation_p.R817Q|MCTP2_uc002btl.2_Missense_Mutation_p.R460Q	NM_018349	NP_060819	Q6DN12	MCTP2_HUMAN	multiple C2 domains, transmembrane 2 isoform 1	872					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(1)|pancreas(1)|skin(1)	3	Lung NSC(78;0.0821)|all_lung(78;0.148)		BRCA - Breast invasive adenocarcinoma(143;0.0323)|OV - Ovarian serous cystadenocarcinoma(32;0.0593)			AGCCCCCTGCGGAAGAAGCGC	0.522													4	14					0	0	0.001168	0	0
IGF1R	3480	broad.mit.edu	37	15	99500542	99500542	+	Silent	SNP	C	T	T	rs70958400		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:99500542C>T	uc002bul.2	+	21	4025	c.3975C>T	c.(3973-3975)GCC>GCT	p.A1325A	IGF1R_uc010bon.2_Silent_p.A1324A	NM_000875	NP_000866	P08069	IGF1R_HUMAN	insulin-like growth factor 1 receptor precursor	1325	Cytoplasmic (Potential).				anti-apoptosis|immune response|insulin receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of DNA replication|protein autophosphorylation|protein tetramerization	microsome	ATP binding|identical protein binding|insulin binding|insulin receptor binding|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor receptor activity|metal ion binding|phosphatidylinositol 3-kinase binding			lung(3)|kidney(3)|ovary(1)|central_nervous_system(1)	8	all_cancers(4;4.17e-14)|all_epithelial(3;4.34e-15)|Lung NSC(78;0.00175)|all_lung(78;0.00351)|Melanoma(26;0.00505)|Medulloblastoma(229;0.163)		Epithelial(2;1.94e-12)|all cancers(5;6.83e-11)|BRCA - Breast invasive adenocarcinoma(2;2.88e-09)|OV - Ovarian serous cystadenocarcinoma(32;0.00261)		Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)|Mecasermin(DB01277)	GACACAAGGCCGAGAACGGCC	0.682													14	24					0	0	0.002450	0	0
PCSK6	5046	broad.mit.edu	37	15	101983763	101983763	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr15:101983763G>A	uc002bwy.2	-	3	714	c.400C>T	c.(400-402)CAG>TAG	p.Q134*	PCSK6_uc010bpd.2_Nonsense_Mutation_p.Q4*|PCSK6_uc010bpe.2_Nonsense_Mutation_p.Q134*|PCSK6_uc002bxa.2_Nonsense_Mutation_p.Q134*|PCSK6_uc002bxb.2_Nonsense_Mutation_p.Q134*|PCSK6_uc002bxc.1_Nonsense_Mutation_p.Q134*|PCSK6_uc002bxd.1_Nonsense_Mutation_p.Q134*|PCSK6_uc002bxe.2_Nonsense_Mutation_p.Q134*|PCSK6_uc002bxg.1_Nonsense_Mutation_p.Q134*	NM_002570	NP_002561	P29122	PCSK6_HUMAN	paired basic amino acid cleaving system 4	134					glycoprotein metabolic process|nerve growth factor processing|nerve growth factor production|nerve growth factor receptor signaling pathway|regulation of BMP signaling pathway|secretion by cell	cell surface|endomembrane system|endoplasmic reticulum|extracellular matrix|extracellular space|Golgi lumen|membrane|soluble fraction	eukaryotic cell surface binding|heparin binding|nerve growth factor binding|serine-type endopeptidase activity			pancreas(2)	2	Lung NSC(78;0.00102)|all_lung(78;0.00128)|Melanoma(26;0.00505)		OV - Ovarian serous cystadenocarcinoma(32;0.000803)|LUSC - Lung squamous cell carcinoma(107;0.187)|Lung(145;0.23)			CTCTGTACCTGGGGGTCCATT	0.458													15	86					0	0	0.004007	0	0
PDPK1	5170	broad.mit.edu	37	16	2607941	2607941	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:2607941C>T	uc002cqs.2	+	2	406	c.262C>T	c.(262-264)CTT>TTT	p.L88F	PDPK1_uc002cqt.2_Missense_Mutation_p.L88F|PDPK1_uc010bsn.2_Missense_Mutation_p.L88F|PDPK1_uc002cqu.2_Missense_Mutation_p.L61F|PDPK1_uc002cqv.1_Missense_Mutation_p.L61F|PDPK1_uc010uwe.1_Missense_Mutation_p.L88F|uc010bso.1_5'Flank	NM_002613	NP_002604	O15530	PDPK1_HUMAN	3-phosphoinositide dependent protein kinase-1	88	ATP (By similarity).|Protein kinase.				actin cytoskeleton organization|activation of protein kinase B activity|insulin receptor signaling pathway|negative regulation of protein kinase activity|nerve growth factor receptor signaling pathway|peptidyl-threonine phosphorylation|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of establishment of protein localization in plasma membrane|synaptic transmission|T cell costimulation|T cell receptor signaling pathway	cytosol|nucleoplasm|plasma membrane	3-phosphoinositide-dependent protein kinase activity|ATP binding			central_nervous_system(2)|ovary(1)	3		Ovarian(90;0.17)			Celecoxib(DB00482)	TGGGAAAATCCTTGGGGAAGG	0.617													7	57					0	0	0.001984	0	0
TFAP4	7023	broad.mit.edu	37	16	4312623	4312623	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:4312623C>T	uc010uxg.1	-	2	423	c.169G>A	c.(169-171)GAG>AAG	p.E57K		NM_003223	NP_003214	Q01664	TFAP4_HUMAN	transcription factor AP-4 (activating enhancer	57	Basic motif.				DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|negative regulation by host of viral transcription|negative regulation of cell cycle arrest|negative regulation of cell proliferation|negative regulation of cyclin-dependent protein kinase activity|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|positive regulation by host of viral transcription|positive regulation of apoptosis|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|regulation of S phase of mitotic cell cycle	transcriptional repressor complex	E-box binding|histone deacetylase binding|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			ovary(1)	1						CGTCTCCGCTCGTTGCTGTTG	0.617													14	85					0	0	0.004007	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857172	9857172	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:9857172G>A	uc002czo.3	-	13	4777	c.4229C>T	c.(4228-4230)TCG>TTG	p.S1410L	GRIN2A_uc010uym.1_Missense_Mutation_p.S1410L|GRIN2A_uc010uyn.1_3'UTR|GRIN2A_uc002czr.3_3'UTR	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1410	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGAACAGTACGATGCCGTTGA	0.498													5	43					0	0	0.000602	0	0
ATF7IP2	80063	broad.mit.edu	37	16	10525283	10525283	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:10525283G>A	uc002czu.2	+	3	1033	c.806G>A	c.(805-807)TGG>TAG	p.W269*	ATF7IP2_uc002czv.2_Nonsense_Mutation_p.W269*|ATF7IP2_uc010uyo.1_RNA|ATF7IP2_uc010uyp.1_Intron|ATF7IP2_uc002czw.2_Nonsense_Mutation_p.W269*|ATF7IP2_uc010uyq.1_RNA	NM_024997	NP_079273	Q5U623	MCAF2_HUMAN	activating transcription factor 7 interacting	269					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						GACTCAACATGGCAGTCATCA	0.328													5	30					0	0	0.000602	0	0
XYLT1	64131	broad.mit.edu	37	16	17221565	17221565	+	Silent	SNP	G	A	A	rs112238716		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:17221565G>A	uc002dfa.2	-	10	2266	c.2181C>T	c.(2179-2181)ATC>ATT	p.I727I		NM_022166	NP_071449	Q86Y38	XYLT1_HUMAN	xylosyltransferase I	727	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|extracellular region|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			ovary(4)	4						GTGGGCTTGCGATCTTGAAGA	0.493													12	117					0	0	0.013537	0	0
CP110	9738	broad.mit.edu	37	16	19547897	19547897	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:19547897C>T	uc002dgl.3	+	4	1153	c.906C>T	c.(904-906)CTC>CTT	p.L302L	CP110_uc002dgk.3_Silent_p.L302L			O43303	CP110_HUMAN	RecName: Full=Centrosomal protein of 110 kDa;          Short=Cep110;	302					centriole replication|G2/M transition of mitotic cell cycle|regulation of cytokinesis	centriole|cytosol	protein binding				0						ATGTTCTTCTCCAAGGTGCTT	0.438													11	37					0	0	0.001855	0	0
GP2	2813	broad.mit.edu	37	16	20329667	20329667	+	Missense_Mutation	SNP	C	T	T	rs17853083		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:20329667C>T	uc002dgv.2	-	8	1185	c.1102G>A	c.(1102-1104)GAA>AAA	p.E368K	GP2_uc002dgw.2_Missense_Mutation_p.E365K|GP2_uc002dgx.2_Missense_Mutation_p.E221K|GP2_uc002dgy.2_Missense_Mutation_p.E218K	NM_001007240	NP_001007241	P55259	GP2_HUMAN	zymogen granule membrane glycoprotein 2 isoform	368	ZP.					anchored to membrane|extracellular region|plasma membrane				ovary(3)|skin(1)	4						GCATCCCCTTCGTAAGGATTC	0.507													15	102					0	0	0.006122	0	0
ACSM1	116285	broad.mit.edu	37	16	20673121	20673121	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:20673121G>A	uc002dhm.1	-	6	1055	c.987C>T	c.(985-987)TTC>TTT	p.F329F	ACSM1_uc002dhn.1_RNA|ACSM1_uc010bwg.1_Silent_p.F329F	NM_052956	NP_443188	Q08AH1	ACSM1_HUMAN	acyl-CoA synthetase medium-chain family member	329					benzoate metabolic process|butyrate metabolic process|energy derivation by oxidation of organic compounds|fatty acid oxidation|xenobiotic metabolic process	mitochondrial matrix	acyl-CoA ligase activity|ATP binding|butyrate-CoA ligase activity|GTP binding|metal ion binding			central_nervous_system(1)|skin(1)	2						CATACCTGGTGAAATCCTGCT	0.388													6	34					0	0	0.004482	0	0
ANKS4B	257629	broad.mit.edu	37	16	21261615	21261615	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:21261615C>T	uc010bwp.1	+	2	771	c.728C>T	c.(727-729)TCA>TTA	p.S243L	CRYM_uc010bwq.1_Intron	NM_145865	NP_665872	Q8N8V4	ANS4B_HUMAN	harmonin-interacting ankyrin-repeat containing	243										ovary(2)	2				GBM - Glioblastoma multiforme(48;0.0565)		GACTCGTTCTCAGGGGACTTC	0.488													6	64					0	0	0.001984	0	0
METTL9	51108	broad.mit.edu	37	16	21629267	21629267	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:21629267C>T	uc002dje.2	+	3	637	c.438C>T	c.(436-438)ACC>ACT	p.T146T	uc002diq.3_Intron|METTL9_uc002djf.2_Silent_p.T146T	NM_016025	NP_057109	Q9H1A3	METL9_HUMAN	methyltransferase like 9 isoform 1	146										ovary(1)	1				GBM - Glioblastoma multiforme(48;0.0759)		ACTGGAAAACCCACAGACTTC	0.393													14	74					0	0	0.001855	0	0
OTOA	146183	broad.mit.edu	37	16	21709162	21709162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:21709162C>T	uc002djh.2	+	9	807	c.806C>T	c.(805-807)TCG>TTG	p.S269L	uc002diq.3_Intron|OTOA_uc010vbj.1_Missense_Mutation_p.S190L	NM_144672	NP_653273	Q7RTW8	OTOAN_HUMAN	otoancorin isoform 1	269					sensory perception of sound	anchored to membrane|apical plasma membrane|proteinaceous extracellular matrix				ovary(1)|central_nervous_system(1)|skin(1)	3				GBM - Glioblastoma multiforme(48;0.0414)		GTTCACCTATCGTTTGAAGAA	0.323													4	58					0	0	0.001984	0	0
PRKCB	5579	broad.mit.edu	37	16	24046747	24046747	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:24046747G>A	uc002dmd.2	+	5	605	c.408G>A	c.(406-408)ATG>ATA	p.M136I	PRKCB_uc002dme.2_Missense_Mutation_p.M136I	NM_212535	NP_997700	P05771	KPCB_HUMAN	protein kinase C, beta isoform 1	136	Phorbol-ester/DAG-type 2.				apoptosis|B cell activation|B cell receptor signaling pathway|intracellular signal transduction|lipoprotein transport|platelet activation|positive regulation of I-kappaB kinase/NF-kappaB cascade|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|synaptic transmission|transcription, DNA-dependent	cytosol|nucleus|plasma membrane	androgen receptor binding|ATP binding|chromatin binding|histone binding|histone kinase activity (H3-T6 specific)|ligand-dependent nuclear receptor transcription coactivator activity|protein kinase C activity|protein kinase C binding|zinc ion binding			ovary(3)|central_nervous_system(3)|lung(2)|large_intestine(1)	9					Vitamin E(DB00163)	CAGCCTGCATGATGAATGTGC	0.632													8	49					0	0	0.008291	0	0
ARHGAP17	55114	broad.mit.edu	37	16	24946942	24946942	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:24946942G>A	uc002dnb.2	-	18	1836	c.1743C>T	c.(1741-1743)GAC>GAT	p.D581D	ARHGAP17_uc002dmy.2_Silent_p.D26D|ARHGAP17_uc002dmz.2_Silent_p.D105D|ARHGAP17_uc002dna.2_Silent_p.D308D|ARHGAP17_uc002dnc.2_Silent_p.D503D|ARHGAP17_uc010vcf.1_Silent_p.D324D	NM_001006634	NP_001006635	Q68EM7	RHG17_HUMAN	nadrin isoform 1	581	Pro-rich.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|tight junction	GTPase activator activity|SH3 domain binding				0				GBM - Glioblastoma multiforme(48;0.0407)		CAGATACAGGGTCCTTCGGTT	0.493													5	38					0	0	0.003080	0	0
CLN3	1201	broad.mit.edu	37	16	28493843	28493843	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:28493843G>A	uc002dpo.2	-	11	1184	c.861C>T	c.(859-861)CCC>CCT	p.P287P	uc010vct.1_Intron|CLN3_uc002dpl.2_Silent_p.P209P|CLN3_uc010vcu.1_Silent_p.P187P|CLN3_uc002dpn.2_Silent_p.P188P|CLN3_uc002dpm.2_Silent_p.P233P|CLN3_uc010vcv.1_Silent_p.P263P|CLN3_uc010byd.2_Silent_p.P287P|CLN3_uc002dpp.2_Silent_p.P287P|CLN3_uc002dpt.1_Silent_p.P187P|CLN3_uc002dpq.1_Silent_p.P239P|CLN3_uc010bye.1_Intron|CLN3_uc002dpr.1_RNA|CLN3_uc010byf.1_RNA|CLN3_uc002dps.1_Silent_p.P160P|CLN3_uc002dpu.1_Silent_p.P185P|CLN3_uc002dpw.1_Silent_p.P134P|CLN3_uc010vcw.1_Silent_p.P233P|CLN3_uc002dqa.2_Missense_Mutation_p.P365L|CLN3_uc010vcx.1_Missense_Mutation_p.P214L|CLN3_uc002dpx.1_Silent_p.P164P|CLN3_uc002dpy.1_Silent_p.P131P	NM_000086	NP_000077	Q13286	CLN3_HUMAN	ceroid-lipofuscinosis, neuronal 3	287	Helical; (Potential).				amyloid precursor protein catabolic process|arginine transport|associative learning|autophagic vacuole fusion|cell death|cellular amino acid metabolic process|cytosolic calcium ion homeostasis|galactosylceramide metabolic process|globoside metabolic process|glucosylceramide metabolic process|ionotropic glutamate receptor signaling pathway|lysosomal lumen acidification|lysosomal lumen pH elevation|negative regulation of catalytic activity|negative regulation of macroautophagy|negative regulation of neuron apoptosis|negative regulation of proteolysis|neuromuscular process controlling balance|neurotransmitter metabolic process|protein catabolic process|protein folding|protein processing|receptor-mediated endocytosis|regulation of action potential|sphingomyelin metabolic process|vacuolar transport	autophagic vacuole|caveola|cytosol|early endosome|Golgi membrane|Golgi stack|integral to endoplasmic reticulum membrane|late endosome|lysosomal membrane|membrane fraction|mitochondrion|neuron projection|nucleus|synaptic vesicle|trans-Golgi network	unfolded protein binding				0						CTACGACCAAGGGAACAATGT	0.562													5	38					0	0	0.000602	0	0
ITGAX	3687	broad.mit.edu	37	16	31388540	31388540	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:31388540C>T	uc002ebu.1	+	23	2810	c.2743C>T	c.(2743-2745)CAG>TAG	p.Q915*	ITGAX_uc002ebt.2_Nonsense_Mutation_p.Q915*	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	915	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GACCACCTTCCAGCTGGAGCT	0.547													6	36					0	0	0.001984	0	0
ITGAX	3687	broad.mit.edu	37	16	31391663	31391663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:31391663C>T	uc002ebu.1	+	27	3204	c.3137C>T	c.(3136-3138)ACC>ATC	p.T1046I	ITGAX_uc002ebt.2_Missense_Mutation_p.T1046I	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	1046	Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CTGGATTTCACCCTGAAGGGC	0.632													3	15					0	0	0.000602	0	0
PHKB	5257	broad.mit.edu	37	16	47628101	47628101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:47628101C>T	uc002eev.3	+	12	1232	c.1180C>T	c.(1180-1182)CCA>TCA	p.P394S	PHKB_uc002eeu.3_Missense_Mutation_p.P387S	NM_000293	NP_000284	Q93100	KPBB_HUMAN	phosphorylase kinase, beta isoform a	394					glucose metabolic process|glycogen catabolic process	cytosol|plasma membrane	calmodulin binding|glucan 1,4-alpha-glucosidase activity			ovary(1)|large_intestine(1)|breast(1)	3		all_cancers(37;0.00447)|all_lung(18;0.00616)|Lung NSC(13;0.0418)|Breast(268;0.203)				TCTTTTGACTCCAGTACTTCA	0.318													3	24					0	0	0.009096	0	0
ABCC12	94160	broad.mit.edu	37	16	48167618	48167618	+	Missense_Mutation	SNP	G	A	A	rs145682279		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:48167618G>A	uc002efc.1	-	7	1454	c.1108C>T	c.(1108-1110)CGC>TGC	p.R370C	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.R370C|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	370	ABC transmembrane type-1 1.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				GTGAGTTTGCGTCTCAGGAGG	0.577													5	47					0	0	0.001168	0	0
ABCC12	94160	broad.mit.edu	37	16	48180277	48180277	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:48180277G>A	uc002efc.1	-	1	405	c.59C>T	c.(58-60)TCC>TTC	p.S20F	ABCC12_uc002eey.1_RNA|ABCC12_uc002eez.1_RNA|ABCC12_uc002efa.1_RNA|ABCC12_uc002efb.1_RNA|ABCC12_uc002efd.1_RNA|ABCC12_uc002efe.1_Missense_Mutation_p.S20F|ABCC12_uc010vgj.1_RNA	NM_033226	NP_150229	Q96J65	MRP9_HUMAN	ATP-binding cassette protein C12	20						integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3		all_cancers(37;0.0474)|all_lung(18;0.047)				TTCTGCAAAGGATCTCCGCCG	0.587													12	63					0	0	0.013537	0	0
ABCC11	85320	broad.mit.edu	37	16	48226442	48226442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:48226442G>A	uc002eff.1	-	19	3045	c.2695C>T	c.(2695-2697)CTC>TTC	p.L899F	ABCC11_uc002efg.1_Missense_Mutation_p.L899F|ABCC11_uc002efh.1_Missense_Mutation_p.L899F|ABCC11_uc010vgk.1_RNA	NM_033151	NP_149163	Q96J66	ABCCB_HUMAN	ATP-binding cassette, sub-family C, member 11	899	ABC transmembrane type-1 2.					integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(3)|skin(2)|central_nervous_system(1)	6		all_cancers(37;0.127)|all_lung(18;0.132)|Breast(268;0.166)				TTGTTGAAGAGCTTGTTGTGC	0.507									Cerumen_Type				7	43					0	0	0.004482	0	0
LONP2	83752	broad.mit.edu	37	16	48286166	48286166	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:48286166C>T	uc002efi.1	+	2	447	c.358C>T	c.(358-360)CCC>TCC	p.P120S	LONP2_uc010vgm.1_RNA|LONP2_uc002efj.1_Missense_Mutation_p.P120S	NM_031490	NP_113678	Q86WA8	LONP2_HUMAN	peroxisomal LON protease-like	120	Lon.				misfolded or incompletely synthesized protein catabolic process|protein targeting to peroxisome|signal peptide processing	nucleoid|peroxisomal matrix	ATP binding|ATP-dependent peptidase activity|enzyme binding|sequence-specific DNA binding|serine-type endopeptidase activity				0						GAAGCCATATCCCATTGCTGA	0.473													5	37					0	0	0.000602	0	0
CBLN1	869	broad.mit.edu	37	16	49315257	49315257	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:49315257G>A	uc002efq.2	-	1	459	c.120C>T	c.(118-120)TCC>TCT	p.S40S		NM_004352	NP_004343	P23435	CBLN1_HUMAN	cerebellin 1 precursor	40					nervous system development|synaptic transmission	cell junction|extracellular region|synapse					0		all_cancers(37;0.0766)|all_lung(18;0.24)				ACGTGGGGTTGGAGTCGCACA	0.692													7	32					0	0	0.001984	0	0
ZNF423	23090	broad.mit.edu	37	16	49671203	49671203	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:49671203G>A	uc002efs.2	-	5	2158	c.1860C>T	c.(1858-1860)CTC>CTT	p.L620L	ZNF423_uc010vgn.1_Silent_p.L503L	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	620					cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				CGCTTGCTGAGAGCCGCTGCC	0.567													7	43					0	0	0.001984	0	0
MMP2	4313	broad.mit.edu	37	16	55517950	55517950	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:55517950C>T	uc002ehz.3	+	3	714	c.403C>T	c.(403-405)CTG>TTG	p.L135L	MMP2_uc010vhd.1_Silent_p.L59L|MMP2_uc010ccc.2_Silent_p.L85L	NM_004530	NP_004521	P08253	MMP2_HUMAN	matrix metalloproteinase 2 isoform a	135	Collagenase-like 1.				angiogenesis|collagen catabolic process|proteolysis	extracellular space|membrane|nucleus|proteinaceous extracellular matrix	metalloendopeptidase activity|protein binding|zinc ion binding			large_intestine(3)|ovary(3)|lung(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|kidney(1)	11		Renal(780;0.00183)|Breast(268;0.00354)|Hepatocellular(780;0.00826)|all_neural(199;0.0189)		UCEC - Uterine corpus endometrioid carcinoma (183;0.0185)|all cancers(182;7.16e-45)|Epithelial(162;5.26e-37)|GBM - Glioblastoma multiforme(240;9e-08)|Kidney(780;0.00227)|BRCA - Breast invasive adenocarcinoma(181;0.00786)	Marimastat(DB00786)|Sulindac(DB00605)	CACACCTGATCTGGACCCAGA	0.383													8	55					0	0	0.004482	0	0
CES1	1066	broad.mit.edu	37	16	55857487	55857487	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:55857487G>A	uc002eim.2	-	4	619	c.511C>T	c.(511-513)CGC>TGC	p.R171C	CES1_uc002eil.2_Missense_Mutation_p.R172C|CES1_uc002ein.2_Missense_Mutation_p.R171C	NM_001025194	NP_001020365	P23141	EST1_HUMAN	carboxylesterase 1 isoform b precursor	171					response to toxin	endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity				0				all cancers(182;0.13)|Epithelial(162;0.137)	Aminoglutethimide(DB00357)|Bezafibrate(DB01393)|Cholestyramine(DB01432)|Moexipril(DB00691)	ATGCCCAGGCGATATTGAATG	0.572													5	51					0	0	0.000602	0	0
RRAD	6236	broad.mit.edu	37	16	66956094	66956094	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:66956094C>T	uc002eqn.2	-	5	964	c.812G>A	c.(811-813)CGA>CAA	p.R271Q	RRAD_uc002eqo.2_Missense_Mutation_p.R271Q	NM_001128850	NP_001122322	P55042	RAD_HUMAN	Ras-related associated with diabetes	271					small GTPase mediated signal transduction	plasma membrane	calmodulin binding|GTP binding|GTPase activity				0		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0862)|Epithelial(162;0.198)		AAGGCTCTCTCGCCTCCGGGT	0.607													4	45					0	0	0.009096	0	0
CES3	23491	broad.mit.edu	37	16	67006790	67006790	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:67006790C>T	uc002eqt.2	+	13	1627	c.1554C>T	c.(1552-1554)CCC>CCT	p.P518P	CES3_uc010cdz.2_Silent_p.P515P|CES3_uc010cea.2_RNA|CES3_uc010viw.1_Silent_p.P157P	NM_024922	NP_079198	Q6UWW8	EST3_HUMAN	carboxylesterase 3 precursor	518						endoplasmic reticulum lumen	carboxylesterase activity|methyl indole-3-acetate esterase activity|methyl jasmonate esterase activity|methyl salicylate esterase activity			ovary(3)|central_nervous_system(2)	5		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0488)|Epithelial(162;0.127)		CTCCTTGGCCCCAATTCAACC	0.602													18	57					0	0	0.010504	0	0
HYDIN	54768	broad.mit.edu	37	16	71015351	71015351	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:71015351G>A	uc002ezr.2	-	29	4578	c.4450C>T	c.(4450-4452)CTG>TTG	p.L1484L		NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	1485										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				TCTCCGCTCAGAGTGATATTT	0.483													8	35					0	0	0.002450	0	0
PMFBP1	83449	broad.mit.edu	37	16	72164148	72164148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:72164148C>T	uc002fcc.3	-	12	1933	c.1761G>A	c.(1759-1761)ATG>ATA	p.M587I	PMFBP1_uc002fcd.2_Missense_Mutation_p.M582I|PMFBP1_uc002fce.2_Intron|PMFBP1_uc002fcf.2_Missense_Mutation_p.M437I|PMFBP1_uc010cgo.1_5'Flank	NM_031293	NP_112583	Q8TBY8	PMFBP_HUMAN	polyamine modulated factor 1 binding protein 1	587	Potential.									ovary(2)	2		Ovarian(137;0.179)				CATTCATTTTCATATCCTGCT	0.448													13	66					0	0	0.013537	0	0
MLKL	197259	broad.mit.edu	37	16	74708878	74708878	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:74708878G>A	uc002fdb.2	-	10	1802	c.1361C>T	c.(1360-1362)TCT>TTT	p.S454F	MLKL_uc002fdc.2_Missense_Mutation_p.S246F	NM_152649	NP_689862	Q8NB16	MLKL_HUMAN	mixed lineage kinase domain-like isoform 1	454	Protein kinase.						ATP binding|protein binding|protein kinase activity			stomach(2)	2						GGGCCGCACAGAGGGATCATG	0.552													4	33					0	0	0.009096	0	0
NUDT7	283927	broad.mit.edu	37	16	77759470	77759470	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:77759470C>T	uc010chd.2	+	2	247	c.178C>T	c.(178-180)CGG>TGG	p.R60W	NUDT7_uc002fff.2_Missense_Mutation_p.R60W|NUDT7_uc010vnj.1_Missense_Mutation_p.R60W	NM_001105663	NP_001099133	P0C024	NUDT7_HUMAN	nudix motif 7	60	Nudix hydrolase.				nucleoside diphosphate metabolic process	peroxisome	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides|magnesium ion binding|manganese ion binding			ovary(1)|kidney(1)	2						GTTCACCGTCCGGTCAGAGAA	0.428													5	35					0	0	0.000602	0	0
PKD1L2	114780	broad.mit.edu	37	16	81181855	81181855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr16:81181855G>A	uc002fgh.1	-	29	4861	c.4861C>T	c.(4861-4863)CGG>TGG	p.R1621W	PKD1L2_uc002fgg.1_RNA	NM_052892	NP_443124	Q7Z442	PK1L2_HUMAN	polycystin 1-like 2 isoform a	1621	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane	calcium ion binding|ion channel activity|sugar binding			ovary(1)|central_nervous_system(1)|pancreas(1)	3						TTCGCGACCCGGGGACGGGTG	0.587													6	42					0	0	0.003080	0	0
ZZEF1	23140	broad.mit.edu	37	17	3922983	3922983	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:3922983G>A	uc002fxe.2	-	46	7549	c.7485C>T	c.(7483-7485)TTC>TTT	p.F2495F	ZZEF1_uc002fxg.1_5'Flank	NM_015113	NP_055928	O43149	ZZEF1_HUMAN	zinc finger, ZZ type with EF hand domain 1	2495							calcium ion binding|zinc ion binding			ovary(2)|central_nervous_system(1)|pancreas(1)	4						CCTCCAGGAAGAAATAATCGG	0.562													22	57					0	0	0.014323	0	0
MYBBP1A	10514	broad.mit.edu	37	17	4455771	4455771	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:4455771G>A	uc002fyb.3	-	6	774	c.712C>T	c.(712-714)CTA>TTA	p.L238L	MYBBP1A_uc002fxz.3_Silent_p.L238L	NM_014520	NP_055335	Q9BQG0	MBB1A_HUMAN	MYB binding protein 1a isoform 2	238	Interaction with MYB (By similarity).				nucleocytoplasmic transport|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|NLS-dependent protein nuclear import complex|nucleolus	DNA binding|DNA-directed DNA polymerase activity|transcription factor binding			ovary(1)|skin(1)	2						TCTGAGAATAGGTTCACGGAT	0.557													12	42					0	0	0.002450	0	0
AIPL1	23746	broad.mit.edu	37	17	6338369	6338369	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:6338369C>T	uc002gcp.2	-	1	151	c.56G>A	c.(55-57)GGG>GAG	p.G19E	AIPL1_uc002gcq.2_Missense_Mutation_p.G19E|AIPL1_uc002gcr.2_Missense_Mutation_p.G19E|AIPL1_uc010clk.2_Missense_Mutation_p.G19E|AIPL1_uc010cll.2_Missense_Mutation_p.G19E|AIPL1_uc002gcs.2_Missense_Mutation_p.G19E	NM_014336	NP_055151	Q9NZN9	AIPL1_HUMAN	aryl hydrocarbon receptor interacting	19					protein farnesylation|protein folding|visual perception	cytoplasm|nucleus	farnesylated protein binding|unfolded protein binding				0				COAD - Colon adenocarcinoma(228;0.141)		GCCCGTGCCCCCGTGCAGAAT	0.602													7	24					0	0	0.004482	0	0
TP53	7157	broad.mit.edu	37	17	7577141	7577141	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:7577141C>T	uc002gim.2	-	8	991	c.797G>A	c.(796-798)GGA>GAA	p.G266E	TP53_uc002gig.1_Intron|TP53_uc002gih.2_Missense_Mutation_p.G266E|TP53_uc010cne.1_5'Flank|TP53_uc010cnf.1_Missense_Mutation_p.G134E|TP53_uc010cng.1_Missense_Mutation_p.G134E|TP53_uc002gii.1_Missense_Mutation_p.G134E|TP53_uc010cnh.1_Missense_Mutation_p.G266E|TP53_uc010cni.1_Missense_Mutation_p.G266E|TP53_uc002gij.2_Missense_Mutation_p.G266E	NM_001126112	NP_001119584	P04637	P53_HUMAN	tumor protein p53 isoform a	266	|Interaction with E4F1.|Interaction with HIPK1 (By similarity).|Interaction with AXIN1 (By similarity).		G -> R (in sporadic cancers; somatic mutation).|G -> V (in sporadic cancers; somatic mutation).|G -> E (in sporadic cancers; somatic mutation).|G -> A (in sporadic cancers; somatic mutation).		activation of caspase activity by cytochrome c|base-excision repair|blood coagulation|cell cycle arrest|cell differentiation|cell proliferation|cellular protein localization|cellular response to drug|cellular response to glucose starvation|cellular response to hypoxia|cellular response to ionizing radiation|cellular response to UV|determination of adult lifespan|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in transcription of p21 class mediator|ER overload response|interspecies interaction between organisms|negative regulation of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of helicase activity|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription from RNA polymerase II promoter|nucleotide-excision repair|oxidative stress-induced premature senescence|positive regulation of histone deacetylation|positive regulation of neuron apoptosis|positive regulation of peptidyl-tyrosine phosphorylation|positive regulation of reactive oxygen species metabolic process|positive regulation of thymocyte apoptosis|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|protein localization|protein tetramerization|Ras protein signal transduction|regulation of mitochondrial membrane permeability|replicative senescence|response to antibiotic|response to gamma radiation|response to X-ray	cytoplasm|cytosol|endoplasmic reticulum|insoluble fraction|mitochondrion|nuclear chromatin|nuclear matrix|nucleolus|nucleus|PML body|protein complex|replication fork	ATP binding|chaperone binding|chromatin binding|copper ion binding|damaged DNA binding|DNA strand annealing activity|histone acetyltransferase binding|p53 binding|protease binding|protein binding|protein heterodimerization activity|protein kinase binding|protein N-terminus binding|protein phosphatase 2A binding|RNA polymerase II transcription factor binding|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|transcription regulatory region DNA binding|transcription repressor activity|ubiquitin protein ligase binding|zinc ion binding	p.G266E(45)|p.G266R(42)|p.G266V(32)|p.G266*(12)|p.0?(7)|p.G266fs*79(5)|p.?(3)|p.G262_F270delGNLLGRNSF(2)|p.G266A(2)|p.G266G(2)|p.G266_E271delGRNSFE(2)|p.G262_S269delGNLLGRNS(2)|p.G266fs*4(1)|p.G266T(1)|p.L265_K305del41(1)|p.E258fs*71(1)|p.G266fs*9(1)|p.L265_R267delLGR(1)|p.G266_N268delGRN(1)|p.G262fs*2(1)		large_intestine(4656)|breast(2429)|upper_aerodigestive_tract(2212)|lung(2028)|ovary(1592)|oesophagus(1462)|haematopoietic_and_lymphoid_tissue(1228)|stomach(1136)|urinary_tract(1114)|central_nervous_system(1085)|liver(805)|skin(694)|pancreas(375)|biliary_tract(247)|soft_tissue(209)|prostate(194)|endometrium(150)|bone(102)|vulva(79)|kidney(79)|cervix(68)|thyroid(54)|salivary_gland(43)|adrenal_gland(37)|peritoneum(33)|eye(24)|thymus(21)|genital_tract(16)|autonomic_ganglia(16)|small_intestine(14)|testis(11)|penis(10)|vagina(6)|meninges(5)|pituitary(4)|pleura(3)|gastrointestinal_tract_(site_indeterminate)(1)|NS(1)|Fallopian tube(1)|placenta(1)	22245		all_cancers(10;1.01e-06)|Myeloproliferative disorder(207;0.0122)|Prostate(122;0.081)		GBM - Glioblastoma multiforme(2;1.59e-06)|READ - Rectum adenocarcinoma(115;0.174)		GCTGTTCCGTCCCAGTAGATT	0.517		111	Mis|N|F		breast|colorectal|lung|sarcoma|adrenocortical|glioma|multiple other tumour types	breast|sarcoma|adrenocortical carcinoma|glioma|multiple other tumour types		Other_conserved_DNA_damage_response_genes	Hereditary_Adrenocortical_Cancer|Endometrial_Cancer_Familial_Clustering_of|Hereditary_Breast-Ovarian_Cancer_non-BRCA1/2|Li-Fraumeni_syndrome|Osteosarcoma_Familial_Clustering_of	HNSCC(1;<9.43e-08)|TCGA GBM(1;<1E-08)|TSP Lung(2;<1E-08)|TCGA Ovarian(1;<1.89e-07)|Multiple Myeloma(5;0.019)			5	8					0	0	0.000602	0	0
DNAH2	146754	broad.mit.edu	37	17	7721972	7721972	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:7721972C>T	uc002giu.1	+	69	10562	c.10548C>T	c.(10546-10548)GCC>GCT	p.A3516A	DNAH2_uc010cnm.1_Silent_p.A454A	NM_020877	NP_065928	Q9P225	DYH2_HUMAN	dynein heavy chain domain 3	3516	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(6)|skin(6)|central_nervous_system(1)	13		all_cancers(10;4.66e-07)|Prostate(122;0.081)				GCCTGGAGGCCCAGCTGCTGG	0.592													5	77					0	0	0.000602	0	0
MYH1	4619	broad.mit.edu	37	17	10415854	10415854	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:10415854C>T	uc002gmo.2	-	12	1112	c.1018G>A	c.(1018-1020)GAA>AAA	p.E340K	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	340	Myosin head-like.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						CCCAGAATTTCAATGGCACTC	0.398													6	20					0	0	0.001168	0	0
MYH2	4620	broad.mit.edu	37	17	10428286	10428286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:10428286C>T	uc010coi.2	-	34	4887	c.4759G>A	c.(4759-4761)GAG>AAG	p.E1587K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1587K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1587	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TCAATTTCCTCATCTTTTTCA	0.453													10	71					0	0	0.008291	0	0
MYH2	4620	broad.mit.edu	37	17	10436891	10436891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:10436891C>T	uc010coi.2	-	20	2367	c.2239G>A	c.(2239-2241)GCC>ACC	p.A747T	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.A747T|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	747	Myosin head-like.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						TTCTCAGAGGCCTTCTTGCTA	0.398													11	55					0	0	0.008291	0	0
DNAH9	1770	broad.mit.edu	37	17	11622765	11622765	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:11622765C>T	uc002gne.2	+	27	5735	c.5667C>T	c.(5665-5667)ATC>ATT	p.I1889I	DNAH9_uc010coo.2_Silent_p.I1183I	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	1889	AAA 1 (By similarity).				cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		CACTGGGCATCCTGGTCTATG	0.627													8	43					0	0	0.004482	0	0
TOP3A	7156	broad.mit.edu	37	17	18181278	18181278	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:18181278G>A	uc002gsx.1	-	18	2767	c.2538C>T	c.(2536-2538)TTC>TTT	p.F846F	TOP3A_uc010cpz.1_Silent_p.F298F|TOP3A_uc010vxr.1_Silent_p.F376F|TOP3A_uc002gsw.1_Silent_p.F298F|TOP3A_uc010vxs.1_Silent_p.F744F	NM_004618	NP_004609	Q13472	TOP3A_HUMAN	topoisomerase (DNA) III alpha	846	2 X 27 AA approximate repeats.				DNA topological change|meiosis	chromosome|PML body	ATP binding|DNA topoisomerase type I activity|protein binding|zinc ion binding			skin(3)	3						CTGCCCACAGGAAGAAGTTGC	0.647													16	39					0	0	0.004007	0	0
Unknown	0	broad.mit.edu	37	17	18343596	18343596	+	RNA	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:18343596G>A	uc010vya.1	+	1		c.375G>A								Homo sapiens cDNA FLJ56791 complete cds, highly similar to Keratin, type I cytoskeletal 16.																		ggtggcttgggtgctggcttg	0.438													7	4					0	0	0.003080	0	0
USP22	23326	broad.mit.edu	37	17	20921333	20921333	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:20921333G>A	uc002gym.3	-	5	816	c.612C>T	c.(610-612)TTC>TTT	p.F204F	USP22_uc002gyn.3_Silent_p.F192F|USP22_uc002gyl.3_Silent_p.F99F	NM_015276	NP_056091	Q9UPT9	UBP22_HUMAN	ubiquitin thiolesterase 22	204					cell cycle|embryo development|histone deubiquitination|histone H4 acetylation|histone ubiquitination|positive regulation of mitotic cell cycle|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent|ubiquitin-dependent protein catabolic process	SAGA complex	ligand-dependent nuclear receptor transcription coactivator activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity|zinc ion binding			lung(1)	1						TGTCAGACAGGAAGAAGTCCC	0.572													19	49					0	0	0.007413	0	0
TLCD1	116238	broad.mit.edu	37	17	27052510	27052510	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:27052510C>T	uc002hco.2	-	2	381	c.266G>A	c.(265-267)TGC>TAC	p.C89Y	TLCD1_uc010waw.1_Missense_Mutation_p.C42Y	NM_138463	NP_612472	Q96CP7	TLCD1_HUMAN	TLC domain containing 1 isoform 1	89	TLC.|Helical; (Potential).					integral to membrane					0	Lung NSC(42;0.00431)					CGCAGAGAAGCAAACGAGCAA	0.542													20	47					0	0	0.010504	0	0
CRLF3	51379	broad.mit.edu	37	17	29120537	29120537	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:29120537C>T	uc002hfr.3	-	5	866	c.757G>A	c.(757-759)GGA>AGA	p.G253R	CRLF3_uc010wbr.1_Missense_Mutation_p.G137R	NM_015986	NP_057070	Q8IUI8	CRLF3_HUMAN	cytokine receptor-like factor 3	253	Fibronectin type-III.				negative regulation of cell growth|negative regulation of S phase of mitotic cell cycle|positive regulation of cell cycle arrest|positive regulation of JAK-STAT cascade|positive regulation of transcription from RNA polymerase II promoter	cytoplasm					0		all_hematologic(16;0.014)|Acute lymphoblastic leukemia(14;0.0236)|Myeloproliferative disorder(56;0.0255)				CGGCCATCTCCTCGGGCGCAG	0.473													13	37					0	0	0.002450	0	0
RHBDL3	162494	broad.mit.edu	37	17	30616032	30616032	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:30616032G>A	uc002hhe.1	+	4	530	c.516G>A	c.(514-516)CTG>CTA	p.L172L	RHBDL3_uc010csw.1_Silent_p.L164L|RHBDL3_uc010csx.1_Silent_p.L172L|RHBDL3_uc010csy.1_Silent_p.L74L|RHBDL3_uc002hhf.1_Silent_p.L74L	NM_138328	NP_612201	P58872	RHBL3_HUMAN	rhomboid protease 3	172	Helical; (Potential).				proteolysis	integral to membrane	calcium ion binding|serine-type endopeptidase activity			ovary(1)	1		Breast(31;0.116)|Ovarian(249;0.182)				TCACGCTGCTGGAGGCAAGGA	0.602													5	24					0	0	0.000602	0	0
SLFN11	91607	broad.mit.edu	37	17	33690647	33690647	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:33690647C>T	uc010ctp.2	-	4	622	c.180G>A	c.(178-180)GTG>GTA	p.V60V	SLFN11_uc010ctq.2_Silent_p.V60V|SLFN11_uc002hjh.3_Silent_p.V60V|SLFN11_uc002hjg.3_Silent_p.V60V|SLFN11_uc010ctr.2_Silent_p.V60V	NM_001104588	NP_001098058	Q7Z7L1	SLN11_HUMAN	schlafen family member 11	60						nucleus	ATP binding			large_intestine(1)|ovary(1)|skin(1)	3		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)		CCATTCGAATCACTCCTCCTC	0.448													16	98					0	0	0.006122	0	0
TADA2A	6871	broad.mit.edu	37	17	35822210	35822210	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:35822210C>T	uc002hnt.2	+	10	854	c.697C>T	c.(697-699)CTT>TTT	p.L233F	TADA2A_uc002hnu.1_Missense_Mutation_p.L233F|TADA2A_uc002hnv.2_Missense_Mutation_p.L233F|TADA2A_uc002hnw.2_Missense_Mutation_p.L132F|TADA2A_uc010cvb.2_Missense_Mutation_p.L29F	NM_001488	NP_001479	O75478	TAD2A_HUMAN	transcriptional adaptor 2A isoform a	233					histone H3 acetylation|transcription from RNA polymerase II promoter	chromosome|PCAF complex	DNA binding|sequence-specific DNA binding transcription factor activity|transcription cofactor activity|zinc ion binding			breast(3)|skin(1)	4						ATTAATCAACCTTAGAAAGTT	0.239													7	35					0	0	0.003080	0	0
GPR179	440435	broad.mit.edu	37	17	36486212	36486212	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:36486212C>T	uc002hpz.2	-	11	3261	c.3240G>A	c.(3238-3240)CAG>CAA	p.Q1080Q		NM_001004334	NP_001004334	Q6PRD1	GP179_HUMAN	GPR158-like 1 precursor	1080	Cytoplasmic (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3	Breast(7;2.97e-12)	Breast(25;0.0101)|Ovarian(249;0.15)				TGGAACCCTGCTGAACAGGGG	0.582													12	42					0	0	0.002450	0	0
KRT38	8687	broad.mit.edu	37	17	39594742	39594742	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:39594742C>T	uc002hwq.1	-	5	1443	c.1020_splice	c.e5+1	p.L340_splice		NM_006771	NP_006762	O76015	KRT38_HUMAN	keratin 38							intermediate filament	structural molecule activity			skin(2)	2		Breast(137;0.000496)				AGGACACGTACCAAGGTGTGC	0.567													11	36					0	0	0.002450	0	0
AOC2	314	broad.mit.edu	37	17	40997012	40997012	+	Silent	SNP	C	T	T	rs148771457	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:40997012C>T	uc002ibu.2	+	1	404	c.369C>T	c.(367-369)ATC>ATT	p.I123I	AOC2_uc002ibt.2_Silent_p.I123I	NM_009590	NP_033720	O75106	AOC2_HUMAN	amine oxidase, copper containing 2 isoform b	123					catecholamine metabolic process|visual perception	cytoplasm|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|electron carrier activity|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			ovary(2)	2		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)		CACTGGCCATCGTCCTCTTTG	0.662													18	18					0	0	0.004990	0	0
SLC4A1	6521	broad.mit.edu	37	17	42334865	42334865	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:42334865G>A	uc002igf.3	-	13	1628	c.1479C>T	c.(1477-1479)ATC>ATT	p.I493I	SLC4A1_uc002igg.3_Silent_p.I493I	NM_000342	NP_000333	P02730	B3AT_HUMAN	solute carrier family 4, anion exchanger, member	493	Helical; (Potential).|Membrane (anion exchange).				bicarbonate transport|cellular ion homeostasis	basolateral plasma membrane|cortical cytoskeleton|integral to plasma membrane|Z disc	ankyrin binding|chloride transmembrane transporter activity|inorganic anion exchanger activity|protein anchor|protein homodimerization activity			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(137;0.014)|Prostate(33;0.0181)		BRCA - Breast invasive adenocarcinoma(366;0.115)		GCCAGAAGCCGATCCACACGC	0.592													8	36					0	0	0.004482	0	0
XYLT2	64132	broad.mit.edu	37	17	48433239	48433239	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:48433239G>A	uc002iqo.2	+	6	1295	c.1186G>A	c.(1186-1188)GAT>AAT	p.D396N	XYLT2_uc010dbo.2_RNA	NM_022167	NP_071450	Q9H1B5	XYLT2_HUMAN	xylosyltransferase II	396	Lumenal (Potential).				glycosaminoglycan biosynthetic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane	acetylglucosaminyltransferase activity|protein xylosyltransferase activity			pancreas(1)	1	Breast(11;7.18e-19)					CATTGTGGTGGATGGCGGTTC	0.582													22	30					0	0	0.012319	0	0
LPO	4025	broad.mit.edu	37	17	56344874	56344874	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:56344874G>A	uc002ivt.2	+	12	2174	c.1858G>A	c.(1858-1860)GAA>AAA	p.E620K	LPO_uc010wns.1_Missense_Mutation_p.E561K|LPO_uc010dcp.2_Missense_Mutation_p.E537K|LPO_uc010dcq.2_Missense_Mutation_p.E291K|LPO_uc010dcr.2_Missense_Mutation_p.E183K	NM_006151	NP_006142	P22079	PERL_HUMAN	lactoperoxidase isoform 1 preproprotein	620					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|breast(1)	2						GCCGCTGGTGGAAAGGGGTCG	0.602													5	33					0	0	0.000602	0	0
GH2	2689	broad.mit.edu	37	17	61958244	61958244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:61958244G>A	uc002jco.1	-	4	406	c.344C>T	c.(343-345)CCC>CTC	p.P115L	GH2_uc002jcj.2_Missense_Mutation_p.P115L|CSH2_uc002jck.2_Intron|GH2_uc002jcl.1_Missense_Mutation_p.P115L|GH2_uc002jcm.1_Missense_Mutation_p.P115L|GH2_uc002jcn.1_Missense_Mutation_p.P100L	NM_002059	NP_002050	P01242	SOM2_HUMAN	growth hormone 2 isoform 1	115						extracellular region	hormone activity			upper_aerodigestive_tract(2)|pancreas(1)	3						GAGCTGCACGGGCTCCAGCCA	0.632													14	53					0	0	0.001855	0	0
GPR142	350383	broad.mit.edu	37	17	72368044	72368044	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:72368044C>T	uc010wqy.1	+	4	694	c.694C>T	c.(694-696)CGC>TGC	p.R232C	GPR142_uc010wqx.1_Missense_Mutation_p.R144C	NM_181790	NP_861455	Q7Z601	GP142_HUMAN	G protein-coupled receptor 142	232	Extracellular (Potential).					cell junction|cytoplasm|integral to membrane	G-protein coupled receptor activity			ovary(2)|central_nervous_system(1)|skin(1)	4						GGCTGTGGTGCGCACGGCCAA	0.642													4	24					0	0	0.009096	0	0
TNRC6C	57690	broad.mit.edu	37	17	76045228	76045228	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:76045228C>T	uc002jud.2	+	4	685	c.85C>T	c.(85-87)CAA>TAA	p.Q29*	TNRC6C_uc002juf.2_Nonsense_Mutation_p.Q29*|TNRC6C_uc002jue.2_Nonsense_Mutation_p.Q29*	NM_018996	NP_061869	Q9HCJ0	TNR6C_HUMAN	trinucleotide repeat containing 6C isoform 2	29	Sufficient for interaction with argonaute family proteins.				gene silencing by RNA|regulation of translation		nucleotide binding|RNA binding			ovary(1)|central_nervous_system(1)	2			BRCA - Breast invasive adenocarcinoma(99;0.00269)|Lung(188;0.0973)			CGCACTCGTCCAAAGCCCTTC	0.557													8	30					0	0	0.003080	0	0
ACTG1	71	broad.mit.edu	37	17	79478095	79478095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:79478095G>A	uc002kaj.1	-	4	867	c.842C>T	c.(841-843)TCC>TTC	p.S281F	ACTG1_uc002kah.1_Missense_Mutation_p.S159F|ACTG1_uc002kai.1_Missense_Mutation_p.S238F|ACTG1_uc002kak.1_Missense_Mutation_p.S281F|ACTG1_uc010wun.1_Missense_Mutation_p.S281F|ACTG1_uc002kal.1_Missense_Mutation_p.S281F|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	281					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			CTTCATGATGGAGTTGAAGGT	0.562													26	50					0	0	0.007291	0	0
C17orf70	80233	broad.mit.edu	37	17	79517272	79517272	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:79517272A>G	uc002kaq.2	-	3	1301	c.1246_splice	c.e3+1	p.G416_splice	C17orf70_uc002kao.1_5'Flank|C17orf70_uc010wuq.1_Intron|C17orf70_uc002kap.2_Splice_Site_p.G265_splice	NM_001109760	NP_001103230	Q0VG06	FP100_HUMAN	Fanconi anemia core complex 100 kDa subunit						DNA repair	cytoplasm|intermediate filament cytoskeleton|nucleoplasm	DNA binding			ovary(1)|skin(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0371)			AGCAGCTCATACCTTCATGCG	0.592													35	64					0	0	0.006230	0	0
ENOSF1	55556	broad.mit.edu	37	18	677819	677819	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:677819G>A	uc002kku.3	-	13	1047	c.972C>T	c.(970-972)TTC>TTT	p.F324F	ENOSF1_uc002kkt.3_Silent_p.F242F|ENOSF1_uc010dke.2_RNA|ENOSF1_uc010dkf.2_Silent_p.F331F|ENOSF1_uc002kkv.3_Silent_p.F311F|ENOSF1_uc002kkw.3_Silent_p.F143F|ENOSF1_uc002kkx.3_Silent_p.F248F	NM_017512	NP_059982	Q7L5Y1	ENOF1_HUMAN	enolase superfamily 1 isoform rTS beta	324					cellular amino acid catabolic process	mitochondrion	isomerase activity|metal ion binding			ovary(1)	1						CAATCTGGAGGAACTGCAGGG	0.473													12	66					0	0	0.013537	0	0
IMPA2	3613	broad.mit.edu	37	18	12030427	12030427	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:12030427G>A	uc002kqp.1	+	8	1051	c.837G>A	c.(835-837)ACG>ACA	p.T279T	IMPA2_uc002kqo.1_Silent_p.T90T|IMPA2_uc002kqq.1_Silent_p.T159T	NM_014214	NP_055029	O14732	IMPA2_HUMAN	inositol(myo)-1(or 4)-monophosphatase 2	279					inositol phosphate dephosphorylation|signal transduction	cytoplasm	inositol-1(or 4)-monophosphatase activity|metal ion binding|protein homodimerization activity			skin(2)	2					Lithium(DB01356)	CCTTACAGACGATTAACTATG	0.627													7	39					0	0	0.003080	0	0
C18orf19	125228	broad.mit.edu	37	18	13681760	13681760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:13681760G>A	uc010dlh.2	-	3	749	c.317C>T	c.(316-318)CCG>CTG	p.P106L	C18orf19_uc010dlg.2_Missense_Mutation_p.P106L|C18orf19_uc010dli.2_Missense_Mutation_p.P106L|C18orf19_uc002ksj.3_Missense_Mutation_p.P106L|C18orf19_uc010dlj.2_Intron	NM_001098801	NP_001092271	Q96ND0	CR019_HUMAN	hypothetical protein LOC125228	106						integral to membrane				breast(2)	2						CTTTTTTTCCGGAGTTCCCTG	0.438													25	110					0	0	0.006320	0	0
CTAGE1	64693	broad.mit.edu	37	18	19996025	19996025	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:19996025G>A	uc002ktv.1	-	1	1854	c.1750C>T	c.(1750-1752)CCT>TCT	p.P584S		NM_172241	NP_758441	Q96RT6	CTGE2_HUMAN	cutaneous T-cell lymphoma-associated antigen 1	584						integral to membrane				ovary(1)	1	all_cancers(21;0.000361)|all_epithelial(16;9.61e-06)|Colorectal(14;0.0533)|Lung NSC(20;0.0605)|Ovarian(2;0.116)|all_lung(20;0.135)					GCTGAATCAGGATATGATTGT	0.478													5	52					0	0	0.000602	0	0
ASXL3	80816	broad.mit.edu	37	18	31226315	31226315	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:31226315G>A	uc010dmg.1	+	4	408	c.353G>A	c.(352-354)GGA>GAA	p.G118E	ASXL3_uc002kxq.2_5'UTR	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	118					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GAAGAAAATGGAGGTAAGTGT	0.388													5	51					0	0	0.000602	0	0
MOCOS	55034	broad.mit.edu	37	18	33836961	33836961	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:33836961C>T	uc002kzq.3	+	12	2218	c.2195C>T	c.(2194-2196)TCT>TTT	p.S732F		NM_017947	NP_060417	Q96EN8	MOCOS_HUMAN	molybdenum cofactor sulfurase	732	MOSC.				Mo-molybdopterin cofactor biosynthetic process|water-soluble vitamin metabolic process	cytosol	lyase activity|Mo-molybdopterin cofactor sulfurase activity|molybdenum ion binding|pyridoxal phosphate binding			skin(1)	1					Pyridoxal Phosphate(DB00114)	GCCACCCTTTCTCTGGTGAAT	0.438													17	130					0	0	0.010504	0	0
SLC14A2	8170	broad.mit.edu	37	18	43224002	43224002	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:43224002C>T	uc010dnj.2	+	11	1549	c.1228C>T	c.(1228-1230)CTG>TTG	p.L410L	SLC14A2_uc002lbb.2_Silent_p.L410L|SLC14A2_uc002lbe.2_Silent_p.L410L	NM_007163	NP_009094	Q15849	UT2_HUMAN	solute carrier family 14 (urea transporter),	410	Helical; (Potential).					apical plasma membrane|integral to membrane|membrane fraction	protein binding|urea transmembrane transporter activity			upper_aerodigestive_tract(1)|ovary(1)|central_nervous_system(1)|skin(1)	4						CATCATCTTCCTGCTCCTGAC	0.547													11	90					0	0	0.013537	0	0
DCC	1630	broad.mit.edu	37	18	50734142	50734142	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:50734142C>T	uc002lfe.1	+	11	2403	c.1816C>T	c.(1816-1818)CCG>TCG	p.P606S	DCC_uc010xdr.1_Missense_Mutation_p.P454S|DCC_uc010dpf.1_Missense_Mutation_p.P261S	NM_005215	NP_005206	P43146	DCC_HUMAN	netrin receptor DCC precursor	606	Extracellular (Potential).|Fibronectin type-III 2.				apoptosis|induction of apoptosis|negative regulation of collateral sprouting|negative regulation of dendrite development	cytosol|integral to membrane				skin(8)|ovary(6)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	17		all_cancers(7;0.11)|all_epithelial(6;0.00126)		Colorectal(16;0.0251)|COAD - Colon adenocarcinoma(17;0.0942)		TCGCTATGGTCCGGGCGTCTC	0.353													12	100					0	0	0.013537	0	0
TCF4	6925	broad.mit.edu	37	18	53070735	53070735	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:53070735C>T	uc002lfz.2	-	6	931	c.319G>A	c.(319-321)GGC>AGC	p.G107S	TCF4_uc010xdu.1_5'Flank|TCF4_uc010xdv.1_5'Flank|TCF4_uc002lfx.2_Missense_Mutation_p.G37S|TCF4_uc010xdw.1_5'UTR|TCF4_uc002lfy.2_Missense_Mutation_p.G65S|TCF4_uc010xdx.1_Missense_Mutation_p.G83S|TCF4_uc010dph.1_Missense_Mutation_p.G107S|TCF4_uc010xdy.1_Missense_Mutation_p.G83S|TCF4_uc002lga.2_Missense_Mutation_p.G209S|TCF4_uc010dpi.2_Missense_Mutation_p.G107S|TCF4_uc002lgc.3_Missense_Mutation_p.G28S	NM_003199	NP_003190	P15884	ITF2_HUMAN	transcription factor 4 isoform b	107					positive regulation of neuron differentiation|protein-DNA complex assembly|transcription initiation from RNA polymerase II promoter	transcription factor complex	E-box binding|protein C-terminus binding|protein heterodimerization activity|RNA polymerase II core promoter proximal region sequence-specific DNA binding|RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription|sequence-specific DNA binding RNA polymerase recruiting transcription factor activity|TFIIB-class binding transcription factor activity|TFIIB-class transcription factor binding			ovary(1)|lung(1)	2				Colorectal(16;0.00108)|READ - Rectum adenocarcinoma(59;0.0649)|COAD - Colon adenocarcinoma(17;0.0718)		GAGTATGAGCCCCTTTCTGTT	0.408													13	107					0	0	0.013537	0	0
ALPK2	115701	broad.mit.edu	37	18	56204723	56204723	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:56204723G>A	uc002lhj.3	-	5	2910	c.2696C>T	c.(2695-2697)TCA>TTA	p.S899L	ALPK2_uc002lhk.1_Missense_Mutation_p.S230L	NM_052947	NP_443179	Q86TB3	ALPK2_HUMAN	heart alpha-kinase	899							ATP binding|protein serine/threonine kinase activity			ovary(7)|skin(5)|lung(1)|central_nervous_system(1)	14						AGCTGTGTGTGAAATGTTCAA	0.502													8	39					0	0	0.006214	0	0
KIAA1468	57614	broad.mit.edu	37	18	59972714	59972714	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:59972714C>T	uc002lil.2	+	29	3813	c.3598C>T	c.(3598-3600)CAG>TAG	p.Q1200*	KIAA1468_uc010xel.1_Nonsense_Mutation_p.Q1200*|KIAA1468_uc002lim.2_Nonsense_Mutation_p.Q878*	NM_020854	NP_065905	Q9P260	K1468_HUMAN	hypothetical protein LOC57614	1200							binding			ovary(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)	6		Colorectal(73;0.186)				CAAAATGGGCCAGTTGACAAC	0.403													12	78					0	0	0.001855	0	0
SERPINB7	8710	broad.mit.edu	37	18	61468108	61468108	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:61468108G>A	uc002ljl.2	+	7	702	c.606G>A	c.(604-606)GGG>GGA	p.G202G	SERPINB7_uc002ljm.2_Silent_p.G202G|SERPINB7_uc010xet.1_Silent_p.G185G|SERPINB7_uc010dqg.2_Silent_p.G202G	NM_001040147	NP_001035237	O75635	SPB7_HUMAN	serine (or cysteine) proteinase inhibitor, clade	202					regulation of proteolysis	cytoplasm	serine-type endopeptidase inhibitor activity			lung(2)|central_nervous_system(1)	3		Esophageal squamous(42;0.129)				AGTGCTCTGGGAAGGCAGTCG	0.363													5	49					0	0	0.000602	0	0
HMSD	284293	broad.mit.edu	37	18	61621780	61621780	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:61621780G>A	uc010dqj.2	+	3	360	c.211G>A	c.(211-213)GAT>AAT	p.D71N		NM_001123366	NP_001116838	A8MTL9	HMSD_HUMAN	histocompatibility (minor) serpin domain	71						extracellular region	serine-type endopeptidase inhibitor activity				0						AAAGTCTTATGATTTCCTCAC	0.388													11	32					0	0	0.010729	0	0
FBXO15	201456	broad.mit.edu	37	18	71797881	71797881	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr18:71797881G>A	uc002lle.2	-	4	453	c.117C>T	c.(115-117)ATC>ATT	p.I39I	FBXO15_uc002llf.2_Silent_p.I115I	NM_152676	NP_689889	Q8NCQ5	FBX15_HUMAN	F-box protein 15 isoform 1	39	F-box.									ovary(2)|pancreas(1)	3		Esophageal squamous(42;0.103)|Prostate(75;0.173)		BRCA - Breast invasive adenocarcinoma(31;0.143)		AGTAGATTCCGATCCAAATAA	0.338													4	18					0	0	0.000602	0	0
OR4F17	81099	broad.mit.edu	37	19	110688	110688	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:110688G>A	uc002loc.1	+	1	10	c.10G>A	c.(10-12)GAA>AAA	p.E4K	OR4F17_uc002lob.1_Missense_Mutation_p.E4K	NM_001005240	NP_001005240	Q8NGA8	O4F17_HUMAN	olfactory receptor, family 4, subfamily F,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_cancers(10;1.05e-30)|all_epithelial(18;3.04e-19)|Acute lymphoblastic leukemia(61;4.36e-14)|all_hematologic(61;4.84e-09)|Lung NSC(49;2.49e-05)|all_lung(49;4.36e-05)|Breast(49;0.000304)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		TATGGTGACTGAATTCATTTT	0.388													9	335					0	0	0.008291	0	0
THEG	51298	broad.mit.edu	37	19	375772	375772	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:375772C>T	uc002lol.2	-	1	238	c.199G>A	c.(199-201)GAG>AAG	p.E67K	THEG_uc002lom.2_Missense_Mutation_p.E67K	NM_016585	NP_057669	Q9P2T0	THEG_HUMAN	Theg homolog isoform 1	67					cell differentiation|chaperone-mediated protein complex assembly|multicellular organismal development|spermatogenesis	nucleus	protein binding			ovary(1)	1		all_cancers(10;1.13e-36)|all_epithelial(18;1.46e-23)|Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.1e-06)|all_lung(49;1.55e-06)|Breast(49;4.08e-05)|Hepatocellular(1079;0.137)|Renal(1328;0.228)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCACCTCCTCGGGGGGAAGC	0.612													9	90					0	0	0.013537	0	0
ABCA7	10347	broad.mit.edu	37	19	1046387	1046387	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:1046387C>T	uc002lqw.3	+	13	1835	c.1604C>T	c.(1603-1605)CCG>CTG	p.P535L	ABCA7_uc010dsb.1_Missense_Mutation_p.P397L	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	535	Extracellular (By similarity).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		ATGCCCTATCCGTGCTATGTG	0.697													26	160					0	0	0.006320	0	0
EEF2	1938	broad.mit.edu	37	19	3982416	3982416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:3982416G>A	uc002lze.2	-	5	702	c.619C>T	c.(619-621)CCT>TCT	p.P207S		NM_001961	NP_001952	P13639	EF2_HUMAN	eukaryotic translation elongation factor 2	207						cytosol|ribonucleoprotein complex	GTP binding|GTPase activity|protein binding|translation elongation factor activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.00461)|GBM - Glioblastoma multiforme(1328;0.0223)|STAD - Stomach adenocarcinoma(1328;0.18)		CCGAGGACAGGATCGATCTGG	0.637													4	50					0	0	0.009096	0	0
CREB3L3	84699	broad.mit.edu	37	19	4159755	4159755	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:4159755C>T	uc002lzl.2	+	4	668	c.552C>T	c.(550-552)CTC>CTT	p.L184L	CREB3L3_uc002lzm.2_Silent_p.L174L|CREB3L3_uc010xib.1_Silent_p.L175L|CREB3L3_uc010xic.1_Silent_p.L175L	NM_032607	NP_115996	Q68CJ9	CR3L3_HUMAN	cAMP responsive element binding protein 3-like	184	Cytoplasmic (Potential).				response to unfolded protein	endoplasmic reticulum membrane|integral to membrane|nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|skin(1)	2				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0232)|STAD - Stomach adenocarcinoma(1328;0.18)		AAGACCTCCTCCTTTCGGGCA	0.448													7	56					0	0	0.003080	0	0
CHAF1A	10036	broad.mit.edu	37	19	4429574	4429574	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:4429574C>T	uc002mal.2	+	9	1844	c.1744C>T	c.(1744-1746)CGC>TGC	p.R582C		NM_005483	NP_005474	Q13111	CAF1A_HUMAN	chromatin assembly factor 1, subunit A (p150)	582					cell cycle|DNA repair|DNA replication|DNA replication-dependent nucleosome assembly|protein complex assembly|regulation of transcription, DNA-dependent|transcription, DNA-dependent	CAF-1 complex|WINAC complex	chromatin binding|chromo shadow domain binding|unfolded protein binding			ovary(1)|skin(1)	2		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|BRCA - Breast invasive adenocarcinoma(158;0.0148)|STAD - Stomach adenocarcinoma(1328;0.18)		GGCACTCATCCGCGCGCGAGA	0.622								Chromatin_Structure					6	32					0	0	0.003080	0	0
C3	718	broad.mit.edu	37	19	6718157	6718157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:6718157G>A	uc002mfm.2	-	4	514	c.452C>T	c.(451-453)ACC>ATC	p.T151I		NM_000064	NP_000055	P01024	CO3_HUMAN	complement component 3 precursor	151					complement activation, alternative pathway|complement activation, classical pathway|G-protein coupled receptor protein signaling pathway|inflammatory response|positive regulation vascular endothelial growth factor production	extracellular space	endopeptidase inhibitor activity|receptor binding			skin(3)|ovary(1)|pancreas(1)	5				GBM - Glioblastoma multiforme(1328;1.36e-05)|Lung(535;0.00661)		GTGGTTGACGGTGAAGATCCG	0.662													12	52					0	0	0.001855	0	0
INSR	3643	broad.mit.edu	37	19	7143027	7143027	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:7143027G>A	uc002mgd.1	-	12	2451	c.2342C>T	c.(2341-2343)CCC>CTC	p.P781L	INSR_uc002mge.1_Missense_Mutation_p.P769L	NM_000208	NP_000199	P06213	INSR_HUMAN	insulin receptor isoform Long precursor	781	Fibronectin type-III 2.|Extracellular (Potential).				activation of MAPK activity|activation of protein kinase B activity|carbohydrate metabolic process|fibroblast growth factor receptor signaling pathway|G-protein coupled receptor protein signaling pathway|glucose homeostasis|heart morphogenesis|peptidyl-tyrosine phosphorylation|positive regulation of cell migration|positive regulation of cell proliferation|positive regulation of developmental growth|positive regulation of DNA replication|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of glycolysis|positive regulation of MAPKKK cascade|positive regulation of mitosis|positive regulation of nitric oxide biosynthetic process|positive regulation of protein kinase B signaling cascade|positive regulation of protein phosphorylation|positive regulation of respiratory burst|protein autophosphorylation|protein heterotetramerization|regulation of embryonic development|regulation of transcription, DNA-dependent|transformation of host cell by virus	caveola|endosome membrane|insulin receptor complex|microsome	ATP binding|GTP binding|insulin binding|insulin receptor activity|insulin receptor substrate binding|insulin-like growth factor I binding|insulin-like growth factor II binding|insulin-like growth factor receptor binding|metal ion binding|phosphatidylinositol 3-kinase binding|PTB domain binding|receptor signaling protein tyrosine kinase activity|SH2 domain binding			ovary(4)|lung(3)|central_nervous_system(2)|large_intestine(1)|stomach(1)|skin(1)	12					Insulin Glargine recombinant(DB00047)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	GGAAGTGTTGGGGAAAGCTGC	0.597													16	123					0	0	0.003163	0	0
MBD3L1	85509	broad.mit.edu	37	19	8953934	8953934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:8953934C>T	uc002mko.2	+	1	666	c.580C>T	c.(580-582)CGC>TGC	p.R194C		NM_145208	NP_660209	Q8WWY6	MB3L1_HUMAN	methyl-CpG binding domain protein 3-like	194					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0						TCCTGAAAAACGCTAAGAAAA	0.423													4	17					0	0	0.001168	0	0
MUC16	94025	broad.mit.edu	37	19	9074696	9074696	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:9074696C>T	uc002mkp.2	-	3	12954	c.12750G>A	c.(12748-12750)ACG>ACA	p.T4250T		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	4252	Thr-rich.|Extracellular (Potential).|Ser-rich.				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CCTCCATATTCGTCACTGCTG	0.478													6	47					0	0	0.001168	0	0
ZNF699	374879	broad.mit.edu	37	19	9407285	9407285	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:9407285G>A	uc002mlc.1	-	5	795	c.795C>T	c.(793-795)TTC>TTT	p.F265F		NM_198535	NP_940937	Q32M78	ZN699_HUMAN	zinc finger protein 699	265	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						GTGCCCTAAAGAATGAGGAAC	0.393													5	44					0	0	0.000602	0	0
DNMT1	1786	broad.mit.edu	37	19	10249161	10249161	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:10249161G>A	uc002mng.2	-	34	4201	c.4021C>T	c.(4021-4023)CTG>TTG	p.L1341L	DNMT1_uc002mne.2_RNA|DNMT1_uc002mnf.2_Silent_p.L265L|DNMT1_uc010xlc.1_Silent_p.L1357L|DNMT1_uc002mnh.2_Silent_p.L1236L|DNMT1_uc010xld.1_Silent_p.L1341L	NM_001379	NP_001370	P26358	DNMT1_HUMAN	DNA (cytosine-5-)-methyltransferase 1 isoform b	1341	Catalytic.|Interaction with the PRC2/EED-EZH2 complex (By similarity).				chromatin modification|maintenance of DNA methylation|negative regulation of histone H3-K9 methylation|negative regulation of transcription from RNA polymerase II promoter|positive regulation of gene expression|positive regulation of histone H3-K4 methylation|transcription, DNA-dependent	nucleus	DNA (cytosine-5-)-methyltransferase activity|DNA binding|transcription factor binding			ovary(2)|prostate(1)|lung(1)|breast(1)|skin(1)	6			OV - Ovarian serous cystadenocarcinoma(20;1.59e-09)|Epithelial(33;2.86e-06)|all cancers(31;6.68e-06)		Azacitidine(DB00928)|Decitabine(DB01262)|Flucytosine(DB01099)|Ifosfamide(DB01181)|Procainamide(DB01035)	ACCACGCTCAGCTGGCAGGCC	0.637													10	56					0	0	0.006214	0	0
PDE4A	5141	broad.mit.edu	37	19	10568687	10568687	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:10568687G>A	uc002moj.2	+	8	1118	c.1010G>A	c.(1009-1011)GGG>GAG	p.G337E	PDE4A_uc002mok.2_Missense_Mutation_p.G311E|PDE4A_uc002mol.2_Missense_Mutation_p.G276E|PDE4A_uc002mom.2_Missense_Mutation_p.G98E|PDE4A_uc002mon.2_Intron|PDE4A_uc002moo.2_5'Flank	NM_001111307	NP_001104777	P27815	PDE4A_HUMAN	phosphodiesterase 4A isoform 1	337	Catalytic.				signal transduction	cytosol|membrane fraction|perinuclear region of cytoplasm|ruffle membrane|soluble fraction	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding|protein binding			ovary(1)|breast(1)|central_nervous_system(1)	3			OV - Ovarian serous cystadenocarcinoma(20;5.8e-10)|Epithelial(33;7.58e-07)|all cancers(31;3.91e-06)		Cilostazol(DB01166)|Dipyridamole(DB00975)|Dyphylline(DB00651)|Enprofylline(DB00824)|Iloprost(DB01088)|Milrinone(DB00235)|Pentoxifylline(DB00806)|Phentolamine(DB00692)|Tadalafil(DB00820)|Theophylline(DB00277)	CAAATCACAGGGTTGAAAAAG	0.547													15	74					0	0	0.004990	0	0
ILVBL	10994	broad.mit.edu	37	19	15233527	15233527	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:15233527G>A	uc002nam.2	-	6	814	c.693C>T	c.(691-693)GGC>GGT	p.G231G	ILVBL_uc010dzw.2_Silent_p.G124G	NM_006844	NP_006835	A1L0T0	ILVBL_HUMAN	ilvB (bacterial acetolactate synthase)-like	231						integral to membrane	magnesium ion binding|thiamine pyrophosphate binding|transferase activity			ovary(2)	2						GGCCCACGAGGCCCTTGGGTG	0.622													10	49					0	0	0.010729	0	0
BRD4	23476	broad.mit.edu	37	19	15350007	15350008	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:15350007_15350008GG>AA	uc002nar.2	-	18	3866_3867	c.3644_3645CC>TT	c.(3643-3645)TCC>TTT	p.S1215F		NM_058243	NP_490597	O60885	BRD4_HUMAN	bromodomain-containing protein 4 isoform long	1215					interspecies interaction between organisms|positive regulation of G2/M transition of mitotic cell cycle|positive regulation of transcription elongation from RNA polymerase II promoter|regulation of transcription involved in G1 phase of mitotic cell cycle	condensed nuclear chromosome|cytoplasm	protein binding			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(3;3.02e-24)|Epithelial(3;4.71e-20)|all cancers(3;2.26e-18)			ACTTGGCTGTGGAGGAGGGGGT	0.629			T	NUT|C15orf55	lethal midline carcinoma of young people								4	21					0	0	0.004672	0	0
AKAP8	10270	broad.mit.edu	37	19	15484089	15484089	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:15484089G>A	uc002nav.2	-	5	495	c.434C>T	c.(433-435)CCC>CTC	p.P145L	AKAP8_uc010dzy.2_5'UTR|AKAP8_uc010dzz.1_RNA|AKAP8_uc010xog.1_5'UTR	NM_005858	NP_005849	O43823	AKAP8_HUMAN	A-kinase anchor protein 8	145					signal transduction	nuclear matrix				ovary(1)|breast(1)	2						GGGGCGGTAGGGGTTGTGCTC	0.642													5	37					0	0	0.000602	0	0
NWD1	284434	broad.mit.edu	37	19	16860357	16860357	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:16860357C>T	uc002neu.3	+	6	1326	c.904C>T	c.(904-906)CTT>TTT	p.L302F	NWD1_uc002net.3_Missense_Mutation_p.L167F|NWD1_uc002nev.3_Missense_Mutation_p.L96F			Q149M9	NWD1_HUMAN	RecName: Full=NACHT and WD repeat domain-containing protein 1;	302	WD 1.						ATP binding			skin(3)|ovary(2)|pancreas(2)	7						CCGCCACCACCTTTGGCAGAG	0.622													6	24					0	0	0.001984	0	0
CPAMD8	27151	broad.mit.edu	37	19	17091485	17091485	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:17091485T>G	uc002nfb.2	-	14	1580	c.1548A>C	c.(1546-1548)GAA>GAC	p.E516D		NM_015692	NP_056507	Q8IZJ3	CPMD8_HUMAN	C3 and PZP-like, alpha-2-macroglobulin domain	469						extracellular space|plasma membrane	serine-type endopeptidase inhibitor activity			ovary(4)|breast(4)|large_intestine(3)|pancreas(1)|skin(1)	13						AAAAATAGGCTTCTTCCCCAA	0.577													5	48					0	0	0.001984	0	0
PIK3R2	5296	broad.mit.edu	37	19	18279570	18279570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:18279570C>T	uc002nia.1	+	15	2355	c.1843C>T	c.(1843-1845)CCG>TCG	p.P615S	PIK3R2_uc002nib.1_RNA|PIK3R2_uc010ebi.1_RNA	NM_005027	NP_005018	O00459	P85B_HUMAN	phosphoinositide-3-kinase, regulatory subunit 2	615					fibroblast growth factor receptor signaling pathway|insulin receptor signaling pathway|leukocyte migration|negative regulation of anti-apoptosis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction|T cell costimulation|T cell receptor signaling pathway	phosphatidylinositol 3-kinase complex	GTPase activator activity|phosphatidylinositol 3-kinase regulator activity|protein binding			lung(2)|stomach(1)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|pancreas(1)	6						GGACGATCTCCCGCACCACGA	0.667											OREG0025359	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	6	21					0	0	0.001984	0	0
PDE4C	5143	broad.mit.edu	37	19	18321849	18321849	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:18321849C>T	uc010xqc.1	-	15	2509	c.2029G>A	c.(2029-2031)GAA>AAA	p.E677K	PDE4C_uc002nik.3_Missense_Mutation_p.E677K|PDE4C_uc002nil.3_Missense_Mutation_p.E677K|PDE4C_uc002nif.3_Missense_Mutation_p.E446K|PDE4C_uc002nig.3_Missense_Mutation_p.E392K|PDE4C_uc002nih.3_Missense_Mutation_p.E447K|PDE4C_uc010ebk.2_Missense_Mutation_p.E571K|PDE4C_uc002nii.3_Missense_Mutation_p.E645K|PDE4C_uc010ebl.2_Missense_Mutation_p.E391K	NM_001098819	NP_001092289	Q08493	PDE4C_HUMAN	phosphodiesterase 4C isoform PDE4C-2	677					signal transduction	cytosol	3',5'-cyclic-AMP phosphodiesterase activity|metal ion binding			ovary(2)|skin(2)|central_nervous_system(1)	5					Dyphylline(DB00651)	GCTGTctcttccccctcctct	0.443													10	41					0	0	0.006214	0	0
DDX49	54555	broad.mit.edu	37	19	19035781	19035781	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:19035781C>T	uc002nkq.1	+	9	1077	c.1020C>T	c.(1018-1020)GCC>GCT	p.A340A	HOMER3_uc002nko.1_Intron|HOMER3_uc002nkp.1_Intron|DDX49_uc002nkr.1_RNA|DDX49_uc002nks.1_Silent_p.A233A|DDX49_uc002nkt.1_3'UTR	NM_019070	NP_061943	Q9Y6V7	DDX49_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 49	340	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			Epithelial(12;0.0289)			GCCGGACGGCCCGTGCAGGTG	0.662													4	8					0	0	0.009096	0	0
TMEM161A	54929	broad.mit.edu	37	19	19240968	19240968	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:19240968G>A	uc002nlg.2	-	6	622	c.592C>T	c.(592-594)CCT>TCT	p.P198S	TMEM161A_uc010eca.2_RNA|TMEM161A_uc002nlh.2_Missense_Mutation_p.P173S|TMEM161A_uc002nli.2_Intron|TMEM161A_uc002nlj.2_Missense_Mutation_p.P73S	NM_017814	NP_060284	Q9NX61	T161A_HUMAN	transmembrane protein 161A precursor	198	Cytoplasmic (Potential).				cellular response to oxidative stress|cellular response to UV|negative regulation of apoptosis|positive regulation of DNA repair|response to retinoic acid	integral to membrane				breast(2)	2			OV - Ovarian serous cystadenocarcinoma(5;1.19e-05)|Epithelial(12;0.0011)			CACTTACCAGGCTCCAGGCCC	0.617													6	18					0	0	0.001168	0	0
ZNF676	163223	broad.mit.edu	37	19	22364005	22364005	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:22364005C>T	uc002nqs.1	-	3	832	c.514G>A	c.(514-516)GAA>AAA	p.E172K		NM_001001411	NP_001001411	Q8N7Q3	ZN676_HUMAN	zinc finger protein 676	172	C2H2-type 1; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Lung NSC(12;0.0207)|all_lung(12;0.0214)|all_epithelial(12;0.114)				CCATTTTCTTCACATTTGTAG	0.343													5	40					0	0	0.001168	0	0
ZNF536	9745	broad.mit.edu	37	19	31039293	31039293	+	Missense_Mutation	SNP	G	A	A	rs140654011		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:31039293G>A	uc002nsu.1	+	4	2905	c.2767G>A	c.(2767-2769)GAC>AAC	p.D923N	ZNF536_uc010edd.1_Missense_Mutation_p.D923N	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	923					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding	p.D923N(1)		ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					AGCTTTCATGGACAGTTTTGT	0.498													25	155					0	0	0.005443	0	0
UBA2	10054	broad.mit.edu	37	19	34929578	34929578	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:34929578C>T	uc002nvk.2	+	6	558	c.488C>T	c.(487-489)CCT>CTT	p.P163L	UBA2_uc010xrx.1_Missense_Mutation_p.P36L|UBA2_uc002nvl.2_Missense_Mutation_p.P67L	NM_005499	NP_005490	Q9UBT2	SAE2_HUMAN	SUMO-1 activating enzyme subunit 2	163					protein sumoylation	nucleus	ATP binding|enzyme activator activity|ligase activity|metal ion binding|protein heterodimerization activity|SUMO activating enzyme activity			ovary(1)	1	Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.211)			GAGTGTCATCCTAAGCCGACC	0.403													21	60					0	0	0.010504	0	0
PSG3	5671	broad.mit.edu	37	19	43233499	43233499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:43233499G>A	uc002oue.2	-	5	1151	c.1019C>T	c.(1018-1020)TCA>TTA	p.S340L	PSG3_uc002ouf.2_Intron|PSG1_uc002oug.1_Missense_Mutation_p.S340L|PSG3_uc010eil.2_Missense_Mutation_p.S362L	NM_021016	NP_066296	Q16557	PSG3_HUMAN	pregnancy specific beta-1-glycoprotein 3	340	Ig-like C2-type 3.			Missing (in Ref. 9).	defense response|female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00682)				ATAGGTGAATGAAGGGTAAAT	0.473													19	131					0	0	0.008871	0	0
PSG6	5675	broad.mit.edu	37	19	43411107	43411107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:43411107C>T	uc002ovj.1	-	5	1259	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	PSG3_uc002ouf.2_Intron|PSG11_uc002ouw.2_Intron|PSG7_uc002ous.1_Intron|PSG7_uc002out.1_Intron|PSG10_uc002ouv.1_Intron|PSG6_uc002ovh.1_Missense_Mutation_p.E410K|PSG6_uc002ovi.2_Missense_Mutation_p.E404K|PSG6_uc010xwk.1_Missense_Mutation_p.E243K|PSG11_uc002ovk.1_Missense_Mutation_p.E402K|PSG6_uc002ove.1_Missense_Mutation_p.E193K|PSG6_uc002ovf.1_Missense_Mutation_p.E310K|PSG6_uc002ovg.1_Missense_Mutation_p.E403K	NM_002782	NP_002773	Q00889	PSG6_HUMAN	pregnancy specific beta-1-glycoprotein 6 isoform	403	Ig-like C2-type 3.				female pregnancy	extracellular region				ovary(1)|skin(1)	2		Prostate(69;0.00899)				TTGGAGATTTCCTTGCCAGTG	0.448													20	205					0	0	0.007413	0	0
ZNF222	7673	broad.mit.edu	37	19	44536205	44536205	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:44536205C>T	uc002oyc.2	+	4	561	c.378C>T	c.(376-378)TTC>TTT	p.F126F	ZNF284_uc010ejd.2_Intron|ZNF222_uc002oye.2_Silent_p.F166F|ZNF222_uc002oyd.2_Silent_p.F72F	NM_013360	NP_037492	Q9UK12	ZN222_HUMAN	zinc finger protein 222 isoform 2	126					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)	3		Prostate(69;0.0435)				AACAGTTCTTCAGTGATGTTT	0.398													24	67					0	0	0.002780	0	0
ZFP112	7771	broad.mit.edu	37	19	44833910	44833910	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:44833910G>A	uc010ejj.2	-	5	531	c.418C>T	c.(418-420)CTC>TTC	p.L140F	ZFP112_uc002ozc.3_Missense_Mutation_p.L134F|ZFP112_uc010xwy.1_Missense_Mutation_p.L157F|ZFP112_uc010xwz.1_Missense_Mutation_p.L139F	NM_001083335	NP_001076804	Q9UJU3	ZF112_HUMAN	zinc finger protein 228 isoform 1	140					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(2)	5						ACCTGGCCGAGGGAATTACCT	0.403													7	34					0	0	0.003080	0	0
ZNF285	26974	broad.mit.edu	37	19	44891413	44891413	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:44891413G>A	uc002ozd.3	-	4	1081	c.994C>T	c.(994-996)CAC>TAC	p.H332Y	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.H339Y	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	332	C2H2-type 3.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						TGATGGTTGTGAAGGGAAGAG	0.478													24	56					0	0	0.003954	0	0
ZNF229	7772	broad.mit.edu	37	19	44934628	44934628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:44934628C>T	uc002oze.1	-	6	762	c.328G>A	c.(328-330)GAA>AAA	p.E110K	ZNF229_uc010ejk.1_5'UTR|ZNF229_uc010ejl.1_Missense_Mutation_p.E104K	NM_014518	NP_055333	Q9UJW7	ZN229_HUMAN	zinc finger protein 229	110					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|pancreas(1)	4		Prostate(69;0.0352)				GCCACCTCTTCCCAGATTTTG	0.438													6	44					0	0	0.001168	0	0
PVR	5817	broad.mit.edu	37	19	45157261	45157261	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:45157261G>A	uc002ozm.2	+	4	1116	c.817G>A	c.(817-819)GAG>AAG	p.E273K	PVR_uc010ejs.2_Missense_Mutation_p.E273K|PVR_uc010xxb.1_Missense_Mutation_p.E273K|PVR_uc010xxc.1_Missense_Mutation_p.E273K|PVR_uc002ozn.2_Missense_Mutation_p.E218K	NM_006505	NP_006496	P15151	PVR_HUMAN	poliovirus receptor isoform alpha	273	Extracellular (Potential).|Ig-like C2-type 2.				adherens junction organization|cell adhesion|cell junction assembly|interspecies interaction between organisms|positive regulation of natural killer cell mediated cytotoxicity directed against tumor cell target|susceptibility to natural killer cell mediated cytotoxicity|susceptibility to T cell mediated cytotoxicity	cell junction|cell surface|cytoplasm|extracellular space|integral to membrane|nucleus	cell adhesion molecule binding|receptor activity				0	Lung NSC(12;0.00608)|all_lung(12;0.0148)	Medulloblastoma(540;0.0425)|Ovarian(192;0.0728)|Prostate(69;0.081)|all_neural(266;0.112)		Epithelial(262;0.000601)		CAGCAACCCAGAGCCCACAGG	0.368													43	285					0	0	0.014410	0	0
RTN2	6253	broad.mit.edu	37	19	45997948	45997948	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:45997948G>A	uc002pcb.2	-	3	623	c.395C>T	c.(394-396)CCA>CTA	p.P132L	RTN2_uc002pcc.2_Missense_Mutation_p.P132L|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	132						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		GCGCTCGGATGGAGGCGCGGT	0.682													12	56					0	0	0.010729	0	0
EHD2	30846	broad.mit.edu	37	19	48220193	48220193	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:48220193C>T	uc002phj.3	+	2	574	c.324C>T	c.(322-324)ACC>ACT	p.T108T	EHD2_uc010xyu.1_Intron	NM_014601	NP_055416	Q9NZN4	EHD2_HUMAN	EH-domain containing 2	108					blood coagulation|endocytic recycling	nucleus|plasma membrane|recycling endosome membrane	ATP binding|calcium ion binding|GTP binding|GTPase activity|nucleic acid binding			ovary(1)|skin(1)	2		all_cancers(25;6.74e-07)|all_lung(116;2.02e-05)|Lung NSC(112;3.77e-05)|all_epithelial(76;4.89e-05)|all_neural(266;0.0332)|Ovarian(192;0.086)		OV - Ovarian serous cystadenocarcinoma(262;0.000336)|all cancers(93;0.000415)|Epithelial(262;0.0132)|GBM - Glioblastoma multiforme(486;0.0537)		CTGAGGGCACCGTGCCCGGCA	0.667													4	53					0	0	0.001984	0	0
RPL13A	23521	broad.mit.edu	37	19	49993749	49993749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:49993749C>T	uc002pny.2	+	4	194	c.172C>T	c.(172-174)CTC>TTC	p.L58F	RPL13A_uc002pnz.2_5'UTR|RPL13A_uc002poa.2_Missense_Mutation_p.L48F|SNORD33_uc010emz.1_5'Flank|SNORD34_uc010ena.1_5'Flank|SNORD35A_uc010enb.1_5'Flank	NM_012423	NP_036555	P40429	RL13A_HUMAN	ribosomal protein L13a	58					endocrine pancreas development|translational elongation|translational termination|viral transcription	cytosol|large ribosomal subunit	structural constituent of ribosome				0		all_lung(116;1.62e-07)|Lung NSC(112;8.47e-07)|all_neural(266;0.0381)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00154)|GBM - Glioblastoma multiforme(486;0.0246)		CCTGGCTTTCCTCCGCAAGCG	0.637													9	30					0	0	0.008291	0	0
PRRG2	5639	broad.mit.edu	37	19	50086932	50086932	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:50086932C>T	uc002pon.3	+	3	384	c.219C>T	c.(217-219)TCC>TCT	p.S73S	PRRG2_uc010yaz.1_Silent_p.S50S	NM_000951	NP_000942	O14669	TMG2_HUMAN	proline rich Gla (G-carboxyglutamic acid) 2	73	Gla.|Extracellular (Potential).					extracellular region|integral to plasma membrane	calcium ion binding			skin(1)	1		all_lung(116;7.84e-06)|Lung NSC(112;2.8e-05)|all_neural(266;0.196)|Ovarian(192;0.231)		OV - Ovarian serous cystadenocarcinoma(262;0.00295)|GBM - Glioblastoma multiforme(134;0.0121)		AGAGGTGTTCCTGGGAAGAGG	0.577													29	78					0	0	0.010818	0	0
KLK7	5650	broad.mit.edu	37	19	51483667	51483667	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:51483667G>A	uc002puo.2	-	4	400	c.298C>T	c.(298-300)CGC>TGC	p.R100C	KLK7_uc002pup.2_Missense_Mutation_p.R100C|KLK7_uc010yco.1_5'UTR|KLK7_uc010eok.2_Missense_Mutation_p.R28C	NM_139277	NP_644806	P49862	KLK7_HUMAN	stratum corneum chymotryptic enzyme	100	Peptidase S1.				epidermis development|proteolysis	extracellular region	serine-type endopeptidase activity				0		all_neural(266;0.026)		OV - Ovarian serous cystadenocarcinoma(262;0.00382)|GBM - Glioblastoma multiforme(134;0.00895)		CCGGGGTGGCGGAATGACTTC	0.557													4	35					0	0	0.009096	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51645996	51645996	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:51645996C>T	uc002pvv.1	+	1	439	c.370C>T	c.(370-372)CGT>TGT	p.R124C	SIGLEC7_uc002pvw.1_Missense_Mutation_p.R124C|SIGLEC7_uc010eoq.1_RNA|SIGLEC7_uc010eor.1_Missense_Mutation_p.R124C	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	124	Extracellular (Potential).	Sialic acid.			cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		ATACTTCTTTCGTATGGAGAA	0.478													9	51					0	0	0.004482	0	0
SIGLEC7	27036	broad.mit.edu	37	19	51647767	51647767	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:51647767C>T	uc002pvv.1	+	2	607	c.538C>T	c.(538-540)CCT>TCT	p.P180S	SIGLEC7_uc002pvw.1_Intron|SIGLEC7_uc010eoq.1_Intron|SIGLEC7_uc010eor.1_Intron	NM_014385	NP_055200	Q9Y286	SIGL7_HUMAN	sialic acid binding Ig-like lectin 7 isoform 1	180	Ig-like C2-type 1.|Extracellular (Potential).				cell adhesion	integral to plasma membrane	receptor activity|sugar binding			large_intestine(1)	1		all_neural(266;0.0199)		GBM - Glioblastoma multiforme(134;0.000836)|OV - Ovarian serous cystadenocarcinoma(262;0.00297)		GGGGACGCCCCCTATGATCTC	0.652													19	105					0	0	0.008871	0	0
FPR2	2358	broad.mit.edu	37	19	52272360	52272360	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:52272360G>A	uc002pxr.2	+	2	494	c.449G>A	c.(448-450)TGG>TAG	p.W150*	FPR2_uc002pxs.3_Nonsense_Mutation_p.W150*|FPR2_uc010epf.2_Nonsense_Mutation_p.W150*	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	150	Helical; Name=4; (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						GTCGGACCTTGGATTCTTGCT	0.493													5	57					0	0	0.000602	0	0
LAIR1	3903	broad.mit.edu	37	19	54871657	54871657	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:54871657G>A	uc002qfk.1	-	4	697	c.387C>T	c.(385-387)TCC>TCT	p.S129S	LAIR1_uc002qfl.1_Intron|LAIR1_uc002qfm.1_Silent_p.S128S|LAIR1_uc002qfn.1_Intron|LAIR1_uc010yex.1_Silent_p.S122S|LAIR1_uc002qfo.2_Silent_p.S111S	NM_002287	NP_002278	Q6GTX8	LAIR1_HUMAN	leukocyte-associated immunoglobulin-like	129	Extracellular (Potential).					integral to membrane|plasma membrane	protein binding|receptor activity			ovary(4)	4	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.0573)		CTGTGTCCGGGGAGTCCGGGC	0.622													10	39					0	0	0.004007	0	0
NLRP2	55655	broad.mit.edu	37	19	55497556	55497556	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:55497556C>T	uc002qij.2	+	8	2325	c.2239C>T	c.(2239-2241)CTC>TTC	p.L747F	NLRP2_uc010yfp.1_Missense_Mutation_p.L724F|NLRP2_uc010esn.2_Missense_Mutation_p.L723F|NLRP2_uc010eso.2_Missense_Mutation_p.L744F|NLRP2_uc010esp.2_Missense_Mutation_p.L725F	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	747					apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		TCATCGGAACCTCTGCCTAGC	0.443													7	23					0	0	0.001984	0	0
NLRP2	55655	broad.mit.edu	37	19	55505674	55505674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:55505674G>A	uc002qij.2	+	11	2832	c.2746G>A	c.(2746-2748)GAT>AAT	p.D916N	NLRP2_uc010yfp.1_Missense_Mutation_p.D893N|NLRP2_uc010esn.2_Missense_Mutation_p.D892N|NLRP2_uc010eso.2_Missense_Mutation_p.D913N|NLRP2_uc010esp.2_Missense_Mutation_p.D894N	NM_017852	NP_060322	Q9NX02	NALP2_HUMAN	NLR family, pyrin domain containing 2	916	LRR 4.				apoptosis|positive regulation of caspase activity|positive regulation of interleukin-1 beta secretion	cytoplasm	ATP binding|Pyrin domain binding			ovary(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(297;0.163)	GBM - Glioblastoma multiforme(193;0.028)		TGGCTGCTGCGATCTCACAAA	0.468													14	71					0	0	0.004007	0	0
NLRP4	147945	broad.mit.edu	37	19	56392893	56392893	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:56392893G>A	uc002qmd.3	+	10	3347	c.2925G>A	c.(2923-2925)GAG>GAA	p.E975E	NLRP4_uc002qmf.2_Silent_p.E900E|NLRP4_uc010etf.2_Silent_p.E750E	NM_134444	NP_604393	Q96MN2	NALP4_HUMAN	NLR family, pyrin domain containing 4	975							ATP binding			ovary(5)|skin(4)|lung(3)|upper_aerodigestive_tract(1)|kidney(1)|pancreas(1)	15		Colorectal(82;0.0002)|Ovarian(87;0.221)		GBM - Glioblastoma multiforme(193;0.0606)		CTGAGGAAGAGAGAAATCCTA	0.438													3	39					0	0	0.004672	0	0
ZNF667	63934	broad.mit.edu	37	19	56953336	56953336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:56953336G>A	uc002qnd.2	-	5	1190	c.1028C>T	c.(1027-1029)TCA>TTA	p.S343L	ZNF667_uc010etl.2_Missense_Mutation_p.S125L|ZNF667_uc002qne.2_Missense_Mutation_p.S343L|ZNF667_uc010etm.2_Missense_Mutation_p.S286L	NM_022103	NP_071386	Q5HYK9	ZN667_HUMAN	zinc finger protein 667	343	C2H2-type 6.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1		Colorectal(82;0.000256)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0615)		CATCAGGGGTGAAATCCTATT	0.388													9	68					0	0	0.004482	0	0
PEG3	5178	broad.mit.edu	37	19	57326527	57326527	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:57326527C>T	uc002qnu.2	-	7	3634	c.3283G>A	c.(3283-3285)GAA>AAA	p.E1095K	ZIM2_uc010ygq.1_Intron|ZIM2_uc010ygr.1_Intron|ZIM2_uc002qnr.2_Intron|ZIM2_uc002qnq.2_Intron|ZIM2_uc010etp.2_Intron|ZIM2_uc010ygs.1_Intron|PEG3_uc002qnt.2_Missense_Mutation_p.E1066K|PEG3_uc002qnv.2_Missense_Mutation_p.E1095K|PEG3_uc002qnw.2_Missense_Mutation_p.E971K|PEG3_uc002qnx.2_Missense_Mutation_p.E969K|PEG3_uc010etr.2_Missense_Mutation_p.E1095K	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	1095					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		TGAGGGTCTTCCATGTCTGAG	0.512													10	85					0	0	0.008291	0	0
PEG3	5178	broad.mit.edu	37	19	57333105	57333105	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:57333105G>A	uc002qnu.2	-	4	934	c.583C>T	c.(583-585)CTT>TTT	p.L195F	ZIM2_uc010ygq.1_5'UTR|ZIM2_uc010ygr.1_5'UTR|ZIM2_uc002qnr.2_Missense_Mutation_p.L70F|ZIM2_uc002qnq.2_Missense_Mutation_p.L70F|ZIM2_uc010etp.2_Missense_Mutation_p.L70F|ZIM2_uc010ygs.1_Missense_Mutation_p.L70F|PEG3_uc002qnt.2_Missense_Mutation_p.L196F|PEG3_uc002qnv.2_Missense_Mutation_p.L195F|PEG3_uc002qnw.2_Missense_Mutation_p.L70F|PEG3_uc002qnx.2_Missense_Mutation_p.L69F|PEG3_uc010etr.2_Missense_Mutation_p.L195F	NM_001146186	NP_001139658	Q9GZU2	PEG3_HUMAN	paternally expressed 3 isoform 1	195					apoptosis|viral reproduction	cytoplasm|nucleus	nucleic acid binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		Colorectal(82;0.000256)|all_neural(62;0.103)|Ovarian(87;0.243)		GBM - Glioblastoma multiforme(193;0.0269)		GGAAGGGAAAGATCCCGCGGA	0.537													17	93					0	0	0.004990	0	0
ZIM3	114026	broad.mit.edu	37	19	57646515	57646515	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr19:57646515C>T	uc002qnz.1	-	5	1576	c.1190G>A	c.(1189-1191)GGA>GAA	p.G397E		NM_052882	NP_443114	Q96PE6	ZIM3_HUMAN	zinc finger, imprinted 3	397	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)|skin(1)	2		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.243)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		GAAGGCTTTTCCACATCTGTT	0.393													18	110					0	0	0.004990	0	0
LPIN1	23175	broad.mit.edu	37	2	11922584	11922584	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:11922584C>T	uc010yjn.1	+	8	1381	c.1107C>T	c.(1105-1107)GCC>GCT	p.A369A	LPIN1_uc010yjm.1_Silent_p.A454A|LPIN1_uc002rbt.2_Silent_p.A369A|LPIN1_uc002rbs.2_Silent_p.A405A	NM_145693	NP_663731	Q14693	LPIN1_HUMAN	lipin 1	369					fatty acid catabolic process|transcription, DNA-dependent|triglyceride biosynthetic process|triglyceride mobilization	cytosol|endoplasmic reticulum membrane	phosphatidate phosphatase activity			ovary(2)|large_intestine(1)|skin(1)	4	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.11)|OV - Ovarian serous cystadenocarcinoma(76;0.173)		CCCCCTCTGCCAGTGTAGTCC	0.517													13	40					0	0	0.006122	0	0
FAM49A	81553	broad.mit.edu	37	2	16740730	16740730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:16740730C>T	uc010exm.1	-	9	983	c.835G>A	c.(835-837)GAT>AAT	p.D279N	FAM49A_uc002rck.1_Missense_Mutation_p.D279N	NM_030797	NP_110424	Q9H0Q0	FA49A_HUMAN	family with sequence similarity 49, member A	279						intracellular					0	Acute lymphoblastic leukemia(172;0.0734)|all_hematologic(175;0.088)		GBM - Glioblastoma multiforme(3;0.00969)			ATTCTTACATCGATCTTGGAT	0.483													6	83					0	0	0.001984	0	0
DNAJC5G	285126	broad.mit.edu	37	2	27500810	27500810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:27500810G>A	uc002rjl.1	+	4	720	c.302G>A	c.(301-303)GGA>GAA	p.G101E	SLC30A3_uc010ylh.1_5'Flank|DNAJC5G_uc010yli.1_Intron|DNAJC5G_uc002rjm.1_Missense_Mutation_p.G101E	NM_173650	NP_775921	Q8N7S2	DNJ5G_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 5	101					protein folding	membrane	heat shock protein binding|unfolded protein binding			skin(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGCTCATTGGGAATATATCTG	0.403													18	57					0	0	0.006122	0	0
GALNT14	79623	broad.mit.edu	37	2	31133827	31133827	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:31133827G>A	uc002rnr.2	-	15	2218	c.1599C>T	c.(1597-1599)ATC>ATT	p.I533I	GALNT14_uc002rnq.2_Silent_p.I513I|GALNT14_uc002rns.2_Silent_p.I538I|GALNT14_uc010ymr.1_Silent_p.I498I	NM_024572	NP_078848	Q96FL9	GLT14_HUMAN	N-acetylgalactosaminyltransferase 14	533	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			upper_aerodigestive_tract(2)|skin(1)	3	Acute lymphoblastic leukemia(172;0.155)					GGTTGACGACGATTTCCTTGC	0.557													6	53					0	0	0.001168	0	0
XDH	7498	broad.mit.edu	37	2	31600013	31600013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:31600013C>T	uc002rnv.1	-	14	1412	c.1333G>A	c.(1333-1335)GGA>AGA	p.G445R		NM_000379	NP_000370	P47989	XDH_HUMAN	xanthine dehydrogenase	445					purine nucleotide catabolic process|xanthine catabolic process	cytosol|extracellular region|peroxisome	2 iron, 2 sulfur cluster binding|electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|molybdopterin cofactor binding|protein homodimerization activity|xanthine dehydrogenase activity|xanthine oxidase activity			skin(4)|breast(2)|ovary(1)|central_nervous_system(1)	8	Acute lymphoblastic leukemia(172;0.155)				Allopurinol(DB00437)|Carvedilol(DB01136)|Daunorubicin(DB00694)|Deferoxamine(DB00746)|Desflurane(DB01189)|Menadione(DB00170)|Mercaptopurine(DB01033)|Methotrexate(DB00563)|NADH(DB00157)|Nitrofurazone(DB00336)|Papaverine(DB01113)|Procarbazine(DB01168)|Pyrazinamide(DB00339)|Rasburicase(DB00049)|Spermine(DB00127)|Trifluoperazine(DB00831)|Vitamin E(DB00163)	TCTGTGGTTCCTGGCTTGAAT	0.502													11	66					0	0	0.008291	0	0
NLRC4	58484	broad.mit.edu	37	2	32476179	32476179	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:32476179C>T	uc002roi.2	-	4	1000	c.754G>A	c.(754-756)GAA>AAA	p.E252K	NLRC4_uc002roj.1_Missense_Mutation_p.E252K|NLRC4_uc010ezt.1_Intron	NM_021209	NP_067032	Q9NPP4	NLRC4_HUMAN	caspase recruitment domain protein 12	252	NACHT.				activation of caspase activity|defense response to bacterium|detection of bacterium|interleukin-1 beta secretion|positive regulation of apoptosis	cytoplasm	ATP binding|magnesium ion binding|protein homodimerization activity			ovary(3)|large_intestine(1)|lung(1)|skin(1)	6	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.208)					GGCTTGAATTCATTGTAGCCA	0.498													13	80					0	0	0.001855	0	0
LTBP1	4052	broad.mit.edu	37	2	33500900	33500900	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:33500900G>A	uc002ros.2	+	18	2905	c.2905G>A	c.(2905-2907)GGG>AGG	p.G969R	LTBP1_uc002rot.2_Missense_Mutation_p.G643R|LTBP1_uc002rou.2_Missense_Mutation_p.G642R|LTBP1_uc002rov.2_Missense_Mutation_p.G589R|LTBP1_uc010ymz.1_Missense_Mutation_p.G642R|LTBP1_uc010yna.1_Missense_Mutation_p.G589R	NM_206943	NP_996826	Q14766	LTBP1_HUMAN	latent transforming growth factor beta binding	968	EGF-like 6; calcium-binding (Potential).				negative regulation of transforming growth factor beta receptor signaling pathway by extracellular sequestering of TGFbeta	proteinaceous extracellular matrix	calcium ion binding|growth factor binding|transforming growth factor beta receptor activity			ovary(3)|skin(2)|upper_aerodigestive_tract(1)|lung(1)|central_nervous_system(1)	8	all_hematologic(175;0.115)	Medulloblastoma(90;0.215)				GGACGTCTGTGGGGAGGGGCA	0.537													12	98					0	0	0.010729	0	0
THADA	63892	broad.mit.edu	37	2	43726031	43726031	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:43726031G>A	uc002rsw.3	-	25	4037	c.3685C>T	c.(3685-3687)CCT>TCT	p.P1229S	THADA_uc010far.2_Missense_Mutation_p.P498S|THADA_uc002rsx.3_Missense_Mutation_p.P1229S|THADA_uc002rsy.3_RNA|THADA_uc010fas.1_RNA|THADA_uc002rsz.2_Missense_Mutation_p.P938S|THADA_uc010fat.1_Missense_Mutation_p.P376S|THADA_uc002rta.2_Missense_Mutation_p.P939S	NM_001083953	NP_001077422	Q6YHU6	THADA_HUMAN	thyroid adenoma associated	1229							binding			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(82;0.00361)|all_hematologic(82;0.00837)				GCAACATAAGGAATAATATTT	0.373													31	180					0	0	0.012213	0	0
PLEKHH2	130271	broad.mit.edu	37	2	43919744	43919744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:43919744C>T	uc010yny.1	+	4	361	c.278C>T	c.(277-279)TCG>TTG	p.S93L	PLEKHH2_uc002rte.3_Missense_Mutation_p.S93L|PLEKHH2_uc002rtf.3_Missense_Mutation_p.S93L	NM_172069	NP_742066	Q8IVE3	PKHH2_HUMAN	pleckstrin homology domain containing, family H	93	Potential.					cytoplasm|cytoskeleton|integral to membrane	binding			skin(2)|central_nervous_system(1)	3		all_hematologic(82;0.166)|Acute lymphoblastic leukemia(82;0.17)				GATCTGGAGTCGCTAATACAG	0.338													28	179					0	0	0.012213	0	0
LHCGR	3973	broad.mit.edu	37	2	48950671	48950671	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:48950671C>T	uc002rwu.3	-	6	530	c.460G>A	c.(460-462)GAA>AAA	p.E154K	GTF2A1L_uc002rwt.2_Intron|LHCGR_uc002rwv.2_RNA	NM_000233	NP_000224	P22888	LSHR_HUMAN	luteinizing hormone/choriogonadotropin receptor	154	Extracellular (Potential).|LRR 3.				male genitalia development|male gonad development	endosome|integral to plasma membrane	luteinizing hormone receptor activity			ovary(3)|lung(2)|breast(2)|skin(1)	8		all_hematologic(82;0.151)|Acute lymphoblastic leukemia(82;0.176)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Cetrorelix(DB00050)|Choriogonadotropin alfa(DB00097)|Goserelin(DB00014)|Lutropin alfa(DB00044)|Menotropins(DB00032)	TCACAAATTTCCCTTGAGGAA	0.338									Familial_Male-Limited_Precocious_Puberty				33	20					0	0	0.013726	0	0
BCL11A	53335	broad.mit.edu	37	2	60687932	60687932	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:60687932C>T	uc002sae.1	-	4	2343	c.2115G>A	c.(2113-2115)GAG>GAA	p.E705E	BCL11A_uc002sab.2_Silent_p.E705E|BCL11A_uc002sac.2_Intron|BCL11A_uc010ypi.1_Silent_p.E374E|BCL11A_uc010ypj.1_Silent_p.E671E|BCL11A_uc002sad.1_Silent_p.E553E|BCL11A_uc002saf.1_Silent_p.E671E	NM_022893	NP_075044	Q9H165	BC11A_HUMAN	B-cell CLL/lymphoma 11A isoform 1	705					negative regulation of axon extension|negative regulation of collateral sprouting|negative regulation of dendrite development|positive regulation of collateral sprouting|positive regulation of neuron projection development|positive regulation of transcription from RNA polymerase II promoter|protein sumoylation|regulation of dendrite development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|cytoplasm|nucleus|nucleus	nucleic acid binding|protein heterodimerization activity|protein homodimerization activity|zinc ion binding			central_nervous_system(6)|breast(3)|ovary(2)|skin(2)	13			LUSC - Lung squamous cell carcinoma(5;9.29e-08)|Lung(5;1.34e-06)|Epithelial(17;0.0562)|all cancers(80;0.199)			CTCCGTCCAGCTCCCCGGGCG	0.652			T	IGH@	B-CLL								105	141					0	0	0.014410	0	0
USP34	9736	broad.mit.edu	37	2	61441800	61441800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:61441800G>A	uc002sbe.2	-	68	8099	c.8077C>T	c.(8077-8079)CCA>TCA	p.P2693S		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	2693					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			GAATTGCTTGGTATAAGGGAC	0.413													5	45					0	0	0.000602	0	0
USP34	9736	broad.mit.edu	37	2	61575559	61575559	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:61575559A>C	uc002sbe.2	-	15	1753	c.1731T>G	c.(1729-1731)AGT>AGG	p.S577R		NM_014709	NP_055524	Q70CQ2	UBP34_HUMAN	ubiquitin specific protease 34	577					positive regulation of canonical Wnt receptor signaling pathway|protein K48-linked deubiquitination|ubiquitin-dependent protein catabolic process|Wnt receptor signaling pathway		cysteine-type endopeptidase activity|protein binding|ubiquitin thiolesterase activity|ubiquitin-specific protease activity			ovary(8)|breast(5)|skin(3)|lung(2)|prostate(1)	19			Epithelial(17;0.229)			TACCAGGACCACTGCTTCCAT	0.448													15	167					0	0	0.010504	0	0
BMP10	27302	broad.mit.edu	37	2	69092896	69092896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:69092896G>A	uc002sez.1	-	2	1301	c.1142C>T	c.(1141-1143)TCC>TTC	p.S381F		NM_014482	NP_055297	O95393	BMP10_HUMAN	bone morphogenetic protein 10 preproprotein	381					activin receptor signaling pathway|adult heart development|atrial cardiac muscle tissue morphogenesis|BMP signaling pathway|cardiac muscle cell proliferation|heart trabecula formation|negative regulation of cardiac muscle hypertrophy|negative regulation of cell growth|negative regulation of endothelial cell migration|Notch signaling pathway|pathway-restricted SMAD protein phosphorylation|positive regulation of cardiac muscle cell proliferation|positive regulation of cardiac muscle hypertrophy|positive regulation of pathway-restricted SMAD protein phosphorylation|positive regulation of transcription, DNA-dependent|sarcomere organization|ventricular cardiac muscle cell development|ventricular cardiac muscle tissue morphogenesis	cell surface|extracellular space|Z disc	cytokine activity|growth factor activity|receptor serine/threonine kinase binding			ovary(2)	2						AGCTTTCTGGGAATTCTTGAG	0.488													67	98					0	0	0.014410	0	0
DYSF	8291	broad.mit.edu	37	2	71894600	71894600	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:71894600G>A	uc002sie.2	+	47	5671	c.5295G>A	c.(5293-5295)GTG>GTA	p.V1765V	DYSF_uc010feg.2_Silent_p.V1796V|DYSF_uc010feh.2_Silent_p.V1772V|DYSF_uc002sig.3_Silent_p.V1751V|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Silent_p.V1786V|DYSF_uc010fef.2_Silent_p.V1803V|DYSF_uc010fei.2_Silent_p.V1782V|DYSF_uc010fek.2_Silent_p.V1783V|DYSF_uc010fej.2_Silent_p.V1773V|DYSF_uc010fel.2_Silent_p.V1752V|DYSF_uc010feo.2_Silent_p.V1797V|DYSF_uc010fem.2_Silent_p.V1787V|DYSF_uc010fen.2_Silent_p.V1804V|DYSF_uc002sif.2_Silent_p.V1766V|DYSF_uc010yqy.1_Silent_p.V646V|DYSF_uc010yqz.1_Silent_p.V526V	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1765	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						CGGAGCACGTGGAGTCACGGC	0.652													28	38					0	0	0.006320	0	0
DYSF	8291	broad.mit.edu	37	2	71896829	71896829	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:71896829C>T	uc002sie.2	+	50	5996	c.5620C>T	c.(5620-5622)CCC>TCC	p.P1874S	DYSF_uc010feg.2_Missense_Mutation_p.P1905S|DYSF_uc010feh.2_Missense_Mutation_p.P1881S|DYSF_uc002sig.3_Missense_Mutation_p.P1860S|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.P1895S|DYSF_uc010fef.2_Missense_Mutation_p.P1912S|DYSF_uc010fei.2_Missense_Mutation_p.P1891S|DYSF_uc010fek.2_Missense_Mutation_p.P1892S|DYSF_uc010fej.2_Missense_Mutation_p.P1882S|DYSF_uc010fel.2_Missense_Mutation_p.P1861S|DYSF_uc010feo.2_Missense_Mutation_p.P1906S|DYSF_uc010fem.2_Missense_Mutation_p.P1896S|DYSF_uc010fen.2_Missense_Mutation_p.P1913S|DYSF_uc002sif.2_Missense_Mutation_p.P1875S|DYSF_uc010yqy.1_Missense_Mutation_p.P755S|DYSF_uc010yqz.1_Missense_Mutation_p.P635S	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1874	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GTTCATTTTCCCCTTCGACTA	0.498													34	51					0	0	0.004878	0	0
ALMS1	7840	broad.mit.edu	37	2	73680578	73680578	+	Silent	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:73680578C>A	uc002sje.1	+	10	7038	c.6927C>A	c.(6925-6927)TCC>TCA	p.S2309S	ALMS1_uc002sjf.1_Silent_p.S2265S|ALMS1_uc002sjg.2_Silent_p.S1695S|ALMS1_uc002sjh.1_Silent_p.S1695S	NM_015120	NP_055935	Q8TCU4	ALMS1_HUMAN	Alstrom syndrome 1	2307					G2/M transition of mitotic cell cycle	centrosome|cilium|cytosol|microtubule basal body|spindle pole				skin(3)|ovary(2)|breast(2)|pancreas(1)|lung(1)	9						AACCCTCTTCCACGGGTGTAT	0.433													21	36					2.37509e-13	2.5653e-13	0.010504	1	0
Unknown	0	broad.mit.edu	37	2	90008072	90008072	+	RNA	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:90008072G>A	uc010fhm.2	+	9		c.1245G>A								Parts of antibodies, mostly variable regions.																		AGTGGATCTGGGACAGATTTC	0.502													10	128					0	0	0.010729	0	0
Unknown	0	broad.mit.edu	37	2	90077815	90077815	+	RNA	SNP	C	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:90077815C>G	uc010fhm.2	+	13		c.1392C>G								Parts of antibodies, mostly variable regions.																		TCCTGCTACTCTGGCTCCCAG	0.512													78	303					0	0	0.014410	0	0
VWA3B	200403	broad.mit.edu	37	2	98797639	98797639	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:98797639A>C	uc002syo.2	+	9	1539	c.1275A>C	c.(1273-1275)AAA>AAC	p.K425N	VWA3B_uc010yvh.1_Missense_Mutation_p.K275N|VWA3B_uc002syj.2_RNA|VWA3B_uc002syk.1_RNA|VWA3B_uc002syl.1_5'UTR|VWA3B_uc002sym.2_Missense_Mutation_p.K425N|VWA3B_uc002syn.1_RNA|VWA3B_uc010yvi.1_Missense_Mutation_p.K82N	NM_144992	NP_659429	Q502W6	VWA3B_HUMAN	von Willebrand factor A domain containing 3B	425										ovary(3)|large_intestine(2)|skin(1)	6						TGGATATAAAAGCCAAACCGG	0.572													10	82					0	0	0.013537	0	0
ST6GAL2	84620	broad.mit.edu	37	2	107449069	107449069	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:107449069G>A	uc002tdq.2	-	4	1214	c.1095C>T	c.(1093-1095)GTC>GTT	p.V365V	ST6GAL2_uc002tdr.2_Silent_p.V365V|ST6GAL2_uc002tds.3_Silent_p.V365V	NM_001142351	NP_001135823	Q96JF0	SIAT2_HUMAN	ST6 beta-galactosamide	365	Lumenal (Potential).				growth|multicellular organismal development|oligosaccharide metabolic process|protein glycosylation	Golgi cisterna membrane|integral to Golgi membrane	beta-galactoside alpha-2,6-sialyltransferase activity			pancreas(6)|ovary(4)|skin(1)	11						CCACCAAAATGACGTCTTTAT	0.468													6	68					0	0	0.003080	0	0
SLC5A7	60482	broad.mit.edu	37	2	108614294	108614294	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:108614294G>A	uc002tdv.2	+	5	725	c.449G>A	c.(448-450)GGA>GAA	p.G150E	SLC5A7_uc010ywm.1_5'UTR|SLC5A7_uc010fjj.2_Missense_Mutation_p.G150E|SLC5A7_uc010ywn.1_Missense_Mutation_p.G37E	NM_021815	NP_068587	Q9GZV3	SC5A7_HUMAN	solute carrier family 5 (choline transporter),	150	Cytoplasmic (Potential).				acetylcholine biosynthetic process|neurotransmitter secretion	integral to membrane|plasma membrane	choline:sodium symporter activity			ovary(2)|central_nervous_system(1)|skin(1)	4					Choline(DB00122)	TTTGTTTCAGGAGCCACCATC	0.438													67	226					0	0	0.014410	0	0
ACOXL	55289	broad.mit.edu	37	2	111562933	111562933	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:111562933G>A	uc002tgr.3	+	9	938	c.714G>A	c.(712-714)TCG>TCA	p.S238S	ACOXL_uc010fkc.2_Silent_p.S238S|ACOXL_uc010yxk.1_Silent_p.S238S	NM_001105516	NP_001098986	Q9NUZ1	ACOXL_HUMAN	acyl-Coenzyme A oxidase-like 2	238					fatty acid beta-oxidation	peroxisome	acyl-CoA dehydrogenase activity|acyl-CoA oxidase activity				0						TGACCCCTTCGAGATTAGCTG	0.463													6	81					0	0	0.001168	0	0
PSD4	23550	broad.mit.edu	37	2	113950850	113950850	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:113950850C>T	uc002tjc.2	+	8	2118	c.1935C>T	c.(1933-1935)GCC>GCT	p.A645A	PSD4_uc002tjd.2_Silent_p.A266A|PSD4_uc002tje.2_Silent_p.A616A|PSD4_uc002tjf.2_Silent_p.A266A	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	645	SEC7.				regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						TCCTCCAGGCCTTGGTGCTCA	0.607													4	43					0	0	0.000602	0	0
SLC35F5	80255	broad.mit.edu	37	2	114500402	114500402	+	Missense_Mutation	SNP	G	C	C	rs149790536		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:114500402G>C	uc002tku.1	-	7	1041	c.617C>G	c.(616-618)CCG>CGG	p.P206R	SLC35F5_uc002tkt.2_RNA|SLC35F5_uc002tkv.2_Missense_Mutation_p.P200R|SLC35F5_uc002tkw.2_Missense_Mutation_p.P206R	NM_025181	NP_079457	Q8WV83	S35F5_HUMAN	solute carrier family 35, member F5	206					transport	integral to membrane					0						ATGACTTGACGGAAGCTGTCG	0.393													9	46					0	0	0.004482	0	0
GLI2	2736	broad.mit.edu	37	2	121742241	121742241	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:121742241G>A	uc010flp.2	+	11	1908	c.1878G>A	c.(1876-1878)GAG>GAA	p.E626E	GLI2_uc002tmq.1_Silent_p.E298E|GLI2_uc002tmr.1_Silent_p.E281E|GLI2_uc002tmt.3_Silent_p.E298E|GLI2_uc002tmu.3_Silent_p.E281E|GLI2_uc002tmw.1_Silent_p.E609E	NM_005270	NP_005261	P10070	GLI2_HUMAN	GLI-Kruppel family member GLI2	626					axon guidance|branching morphogenesis of a tube|cell proliferation|cerebellar cortex morphogenesis|developmental growth|embryonic digestive tract development|epidermal cell differentiation|floor plate formation|heart development|hindgut morphogenesis|kidney development|lung development|negative regulation of transcription from RNA polymerase II promoter|odontogenesis of dentine-containing tooth|osteoblast development|osteoblast differentiation|pituitary gland development|positive regulation of DNA replication|positive regulation of T cell differentiation in thymus|positive regulation of transcription from RNA polymerase II promoter|proximal/distal pattern formation|skeletal system development|smoothened signaling pathway involved in ventral spinal cord interneuron specification|spinal cord ventral commissure morphogenesis	nucleus|nucleus	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|lung(2)|breast(1)|central_nervous_system(1)|pancreas(1)	13	Renal(3;0.0496)	Prostate(154;0.0623)				GCGGCCCAGAGAGCACCGAGG	0.667													6	37					0	0	0.003080	0	0
CNTNAP5	129684	broad.mit.edu	37	2	125521687	125521687	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:125521687T>G	uc002tno.2	+	16	2857	c.2493T>G	c.(2491-2493)AAT>AAG	p.N831K	CNTNAP5_uc010flu.2_Missense_Mutation_p.N832K	NM_130773	NP_570129	Q8WYK1	CNTP5_HUMAN	contactin associated protein-like 5 precursor	831	Laminin G-like 3.|Extracellular (Potential).				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(10)	10				BRCA - Breast invasive adenocarcinoma(221;0.248)		TCCTAGAAAATCTTGGCATTA	0.343													7	78					0	0	0.006214	0	0
SMPD4	55627	broad.mit.edu	37	2	130930247	130930247	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:130930247G>A	uc002tqq.1	-	7	1095	c.575C>T	c.(574-576)CCG>CTG	p.P192L	SMPD4_uc002tqp.1_5'UTR|SMPD4_uc010yzy.1_Intron|SMPD4_uc010yzz.1_Intron|SMPD4_uc002tqr.1_Missense_Mutation_p.P192L|SMPD4_uc002tqs.1_Missense_Mutation_p.P60L|SMPD4_uc002tqt.1_Missense_Mutation_p.P70L|SMPD4_uc010zaa.1_Missense_Mutation_p.P79L|SMPD4_uc010zab.1_Missense_Mutation_p.P119L|SMPD4_uc010zac.1_Intron|SMPD4_uc010zad.1_Intron	NM_017951	NP_060421	Q9NXE4	NSMA3_HUMAN	sphingomyelin phosphodiesterase 4 isoform 2	153					sphingomyelin catabolic process	endoplasmic reticulum membrane|Golgi membrane|integral to membrane|trans-Golgi network	metal ion binding|protein binding|sphingomyelin phosphodiesterase activity|sphingomyelin phosphodiesterase D activity				0	Colorectal(110;0.1)				Phosphatidylserine(DB00144)	atactcGAACGGATCTGAGAG	0.473													20	67					0	0	0.003330	0	0
NCKAP5	344148	broad.mit.edu	37	2	133540481	133540481	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:133540481G>A	uc002ttp.2	-	14	4277	c.3903C>T	c.(3901-3903)ATC>ATT	p.I1301I	NCKAP5_uc002ttq.2_Intron	NM_207363	NP_997246	O14513	NCKP5_HUMAN	Nck-associated protein 5 isoform 1	1301							protein binding				0						TATTGGTAATGATCTGAGTGC	0.562													6	72					0	0	0.001984	0	0
RAB3GAP1	22930	broad.mit.edu	37	2	135883819	135883819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:135883819C>T	uc002tuj.2	+	10	924	c.899C>T	c.(898-900)TCT>TTT	p.S300F	RAB3GAP1_uc010fnf.2_Missense_Mutation_p.S300F|RAB3GAP1_uc010fng.2_Missense_Mutation_p.S125F|RAB3GAP1_uc010fnh.1_RNA	NM_012233	NP_036365	Q15042	RB3GP_HUMAN	RAB3 GTPase-activating protein	300						centrosome|nucleus|soluble fraction	Rab GTPase activator activity|Rab GTPase binding			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(221;0.117)		GATGTTTATTCGTAAGTATGT	0.294													7	39					0	0	0.003080	0	0
LCT	3938	broad.mit.edu	37	2	136594497	136594498	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:136594497_136594498GG>AA	uc002tuu.1	-	1	253_254	c.242_243CC>TT	c.(241-243)GCC>GTT	p.A81V		NM_002299	NP_002290	P09848	LPH_HUMAN	lactase-phlorizin hydrolase preproprotein	81	Extracellular (Potential).				carbohydrate metabolic process|polysaccharide digestion	apical plasma membrane|integral to plasma membrane|membrane fraction	cation binding|glycosylceramidase activity|lactase activity			ovary(7)|central_nervous_system(2)|skin(2)|pancreas(1)|lung(1)	13				BRCA - Breast invasive adenocarcinoma(221;0.169)		TGATCTGACTGGCATGGAGACT	0.51													12	42					0	0	0.004672	0	0
THSD7B	80731	broad.mit.edu	37	2	138330046	138330046	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:138330046C>T	uc002tva.1	+	16	3256	c.3256C>T	c.(3256-3258)CCA>TCA	p.P1086S	THSD7B_uc010zbj.1_Intron	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		TGAAATTCCCCCAGAAACCCA	0.463													4	21					0	0	0.000602	0	0
LRP1B	53353	broad.mit.edu	37	2	141819819	141819819	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:141819819C>T	uc002tvj.1	-	8	2009	c.1037G>A	c.(1036-1038)GGG>GAG	p.G346E	LRP1B_uc010fnl.1_Intron	NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	346	Extracellular (Potential).|LDL-receptor class B 3.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		GGCGACATTCCCGTAGTCAGT	0.443										TSP Lung(27;0.18)			12	35					0	0	0.013537	0	0
KIF5C	3800	broad.mit.edu	37	2	149864535	149864535	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:149864535C>T	uc010zbu.1	+	23	2872	c.2504C>T	c.(2503-2505)TCC>TTC	p.S835F	KIF5C_uc002tws.1_RNA|KIF5C_uc002twu.1_Missense_Mutation_p.S117F	NM_004522	NP_004513	O60282	KIF5C_HUMAN	kinesin family member 5C	835					microtubule-based movement|organelle organization	cytoplasm|kinesin complex|microtubule	ATP binding|microtubule motor activity			skin(1)	1				BRCA - Breast invasive adenocarcinoma(221;0.108)		CAGAAAATTTCCTTCTTGGAG	0.542													8	47					0	0	0.004482	0	0
NEB	4703	broad.mit.edu	37	2	152425865	152425865	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:152425865C>T	uc010fnx.2	-	82	12540	c.12349G>A	c.(12349-12351)GAA>AAA	p.E4117K	NEB_uc002txr.2_Missense_Mutation_p.E540K	NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	4117	Nebulin 112.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		CGCAACCATTCCAAGTCAGCC	0.473													13	39					0	0	0.003163	0	0
NEB	4703	broad.mit.edu	37	2	152499715	152499715	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:152499715C>T	uc010fnx.2	-	58	8300	c.8109G>A	c.(8107-8109)ATG>ATA	p.M2703I		NM_004543	NP_004534	P20929	NEBU_HUMAN	nebulin isoform 3	2703	Nebulin 73.				muscle filament sliding|muscle organ development|regulation of actin filament length|somatic muscle development	actin cytoskeleton|cytosol|Z disc	actin binding|structural constituent of muscle			ovary(8)|large_intestine(5)|breast(3)|central_nervous_system(2)|skin(1)|pancreas(1)	20				BRCA - Breast invasive adenocarcinoma(221;0.219)		GTATGGAATCCATAAGGCTGG	0.373													44	111					0	0	0.014410	0	0
KCNJ3	3760	broad.mit.edu	37	2	155711698	155711698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:155711698C>T	uc002tyv.1	+	3	1574	c.1379C>T	c.(1378-1380)TCT>TTT	p.S460F	KCNJ3_uc010zce.1_3'UTR	NM_002239	NP_002230	P48549	IRK3_HUMAN	potassium inwardly-rectifying channel J3	460	Cytoplasmic (By similarity).				synaptic transmission	voltage-gated potassium channel complex	G-protein activated inward rectifier potassium channel activity|protein binding			upper_aerodigestive_tract(1)|pancreas(1)	2					Halothane(DB01159)	AAGATGTTATCTGATCCCATG	0.468													5	39					0	0	0.000602	0	0
CCDC148	130940	broad.mit.edu	37	2	159035451	159035451	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:159035451G>A	uc002tzq.2	-	12	1691	c.1428C>T	c.(1426-1428)GCC>GCT	p.A476A	CCDC148_uc002tzr.2_Silent_p.A324A|CCDC148_uc010foh.2_Silent_p.A189A	NM_138803	NP_620158	Q8NFR7	CC148_HUMAN	coiled-coil domain containing 148	476	Potential.									ovary(2)	2						CTTCTTGAAGGGCCACTTCCT	0.378													12	37					0	0	0.013537	0	0
SCN1A	6323	broad.mit.edu	37	2	166892769	166892769	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:166892769A>C	uc010zcz.1	-	16	3203	c.3185T>G	c.(3184-3186)CTT>CGT	p.L1062R	SCN1A_uc002udo.3_Missense_Mutation_p.L942R|SCN1A_uc010fpk.2_Missense_Mutation_p.L914R	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	1073						voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AAGATAGTCAAGATCTTTCCC	0.318													6	37					0	0	0.001168	0	0
SCN1A	6323	broad.mit.edu	37	2	166909411	166909411	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:166909411C>T	uc010zcz.1	-	5	663	c.645G>A	c.(643-645)TTG>TTA	p.L215L	SCN1A_uc002udo.3_Silent_p.L84L|SCN1A_uc010fpk.2_Silent_p.L84L	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	215	Helical; Voltage-sensor; Name=S4 of repeat I; (By similarity).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	TGAATGTTCTCAATGCCGAGA	0.453													5	19					0	0	0.001984	0	0
SCN9A	6335	broad.mit.edu	37	2	167056335	167056335	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:167056335G>A	uc010fpl.2	-	27	5122	c.4781C>T	c.(4780-4782)TCC>TTC	p.S1594F	uc002udp.2_Intron	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	1605	IV.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CAGGGTAGGGGACACAAAATA	0.418													6	80					0	0	0.003080	0	0
SCN9A	6335	broad.mit.edu	37	2	167162325	167162325	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:167162325C>T	uc010fpl.2	-	5	914	c.573G>A	c.(571-573)CTG>CTA	p.L191L	SCN9A_uc002udr.1_Silent_p.L62L|SCN9A_uc002uds.1_Silent_p.L62L|SCN9A_uc002udt.1_Silent_p.L62L	NM_002977	NP_002968	Q15858	SCN9A_HUMAN	sodium channel, voltage-gated, type IX, alpha	191	Helical; Name=S3 of repeat I; (Potential).|I.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|central_nervous_system(5)|skin(2)	13					Lamotrigine(DB00555)|Lidocaine(DB00281)	CGACAAAATCCAGCCAGTTCC	0.383													13	28					0	0	0.013537	0	0
SCN7A	6332	broad.mit.edu	37	2	167304175	167304175	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:167304175G>A	uc002udu.1	-	11	1461	c.1334C>T	c.(1333-1335)TCC>TTC	p.S445F	SCN7A_uc010fpm.1_RNA	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	445					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TGTGTCTGTGGAAATTGGTGA	0.383													18	63					0	0	0.014323	0	0
ABCB11	8647	broad.mit.edu	37	2	169870007	169870007	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:169870007G>A	uc002ueo.1	-	5	290	c.164C>T	c.(163-165)TCA>TTA	p.S55L		NM_003742	NP_003733	O95342	ABCBB_HUMAN	ATP-binding cassette, sub-family B (MDR/TAP),	55	Cytoplasmic (Potential).				bile acid biosynthetic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|bile acid-exporting ATPase activity|canalicular bile acid transmembrane transporter activity|sodium-exporting ATPase activity, phosphorylative mechanism			ovary(2)|large_intestine(2)|breast(1)	5					Adenosine triphosphate(DB00171)|Bosentan(DB00559)|Glibenclamide(DB01016)	GTCAGTTGATGAAGAAAACCG	0.418													10	61					0	0	0.006214	0	0
OLA1	29789	broad.mit.edu	37	2	175006601	175006601	+	Silent	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:175006601T>C	uc002uih.2	-	5	687	c.501A>G	c.(499-501)CTA>CTG	p.L167L	OLA1_uc002uii.2_Silent_p.L9L|OLA1_uc010fqq.2_Silent_p.L167L|OLA1_uc002uij.2_Silent_p.L9L|OLA1_uc002uik.2_Silent_p.L137L|OLA1_uc010fqr.2_Silent_p.L167L	NM_013341	NP_037473	Q9NTK5	OLA1_HUMAN	Obg-like ATPase 1 isoform 1	167					ATP catabolic process	cytoplasm	ATP binding|GTP binding|hydrolase activity|protein binding			ovary(1)|breast(1)	2						CCACCTTTTCTAGTTTATCTA	0.328													14	50					0	0	0.003163	0	0
TTN	7273	broad.mit.edu	37	2	179455277	179455277	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:179455277C>T	uc010zfg.1	-	253	53695	c.53471G>A	c.(53470-53472)TGG>TAG	p.W17824*	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Nonsense_Mutation_p.W11519*|TTN_uc010zfi.1_Nonsense_Mutation_p.W11452*|TTN_uc010zfj.1_Nonsense_Mutation_p.W11327*	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	18751							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			AGGCTTTGTCCACACCAAATC	0.443													30	107					0	0	0.012213	0	0
TTN	7273	broad.mit.edu	37	2	179547564	179547564	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:179547564C>T	uc010zfg.1	-	132	29446	c.29222G>A	c.(29221-29223)CGG>CAG	p.R9741Q	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.R6402Q|TTN_uc010fre.1_Missense_Mutation_p.R588Q	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	10668							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TTCTTCTTCCCGTTGTACTGA	0.353													7	49					0	0	0.001984	0	0
TTN	7273	broad.mit.edu	37	2	179576075	179576075	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:179576075C>T	uc010zfg.1	-	94	24380	c.24156G>A	c.(24154-24156)GAG>GAA	p.E8052E	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Silent_p.E4713E	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	8979							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GAAGTTTTTGCTCTGTAGGAA	0.323													4	42					0	0	0.009096	0	0
TTN	7273	broad.mit.edu	37	2	179622509	179622509	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:179622509C>T	uc010zfi.1	-	44	10524	c.10300G>A	c.(10300-10302)GAG>AAG	p.E3434K	TTN_uc010zfg.1_Intron|TTN_uc010zfh.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Intron|TTN_uc002unb.2_Intron	NM_133432	NP_597676	Q8WZ42	TITIN_HUMAN	titin isoform novex-1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			CTGACTGTCTCCCCGTTGTGC	0.468													8	116					0	0	0.003080	0	0
TTN	7273	broad.mit.edu	37	2	179634647	179634647	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:179634647G>A	uc010zfg.1	-	37	8885	c.8661C>T	c.(8659-8661)ACC>ACT	p.T2887T	TTN_uc010zfh.1_Silent_p.T2841T|TTN_uc010zfi.1_Silent_p.T2841T|TTN_uc010zfj.1_Silent_p.T2841T|TTN_uc002unb.2_Silent_p.T2887T	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	2887							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TATTTTTCATGGTTTTTGTAA	0.373													7	46					0	0	0.001984	0	0
ITGA4	3676	broad.mit.edu	37	2	182374525	182374525	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:182374525G>A	uc002unu.2	+	16	2599	c.1836G>A	c.(1834-1836)ATG>ATA	p.M612I	ITGA4_uc010frj.1_Missense_Mutation_p.M94I	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	612	SG1.|Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	AAGACATAATGAAAAAAACAG	0.328													6	38					0	0	0.001168	0	0
ITGA4	3676	broad.mit.edu	37	2	182396419	182396419	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:182396419C>T	uc002unu.2	+	25	3463	c.2700C>T	c.(2698-2700)TTC>TTT	p.F900F	ITGA4_uc002unv.2_Silent_p.F145F	NM_000885	NP_000876	P13612	ITA4_HUMAN	integrin alpha 4 precursor	900	Extracellular (Potential).				blood coagulation|integrin-mediated signaling pathway|leukocyte cell-cell adhesion|leukocyte migration|regulation of immune response	integrin complex	identical protein binding|receptor activity			ovary(3)|lung(1)|central_nervous_system(1)|pancreas(1)	6			OV - Ovarian serous cystadenocarcinoma(117;0.0593)		Natalizumab(DB00108)	GTTTAAATTTCTTGTGTAATT	0.308													16	67					0	0	0.004007	0	0
COL5A2	1290	broad.mit.edu	37	2	189927950	189927950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:189927950C>T	uc002uqk.2	-	27	2092	c.1817G>A	c.(1816-1818)GGA>GAA	p.G606E	COL5A2_uc010frx.2_Missense_Mutation_p.G182E	NM_000393	NP_000384	P05997	CO5A2_HUMAN	alpha 2 type V collagen preproprotein	606					axon guidance|collagen fibril organization|eye morphogenesis|skin development	collagen type V	extracellular matrix structural constituent			ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.127)			CCCTCTGATTCCTATGGAGCC	0.507													20	89					0	0	0.008871	0	0
DNAH7	56171	broad.mit.edu	37	2	196681503	196681503	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:196681503G>A	uc002utj.3	-	51	9711	c.9610C>T	c.(9610-9612)CGT>TGT	p.R3204C		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3204					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GCAATAGGACGATAGCCCATG	0.433													11	51					0	0	0.010729	0	0
DNAH7	56171	broad.mit.edu	37	2	196681677	196681677	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:196681677C>T	uc002utj.3	-	51	9537	c.9436G>A	c.(9436-9438)GAA>AAA	p.E3146K		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	3146	AAA 5 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						TCTTCTATTTCTTTTAACTGC	0.294													5	18					0	0	0.000602	0	0
DNAH7	56171	broad.mit.edu	37	2	196759829	196759829	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:196759829G>A	uc002utj.3	-	30	4868	c.4767C>T	c.(4765-4767)TCC>TCT	p.S1589S		NM_018897	NP_061720	Q8WXX0	DYH7_HUMAN	dynein, axonemal, heavy chain 7	1589	AAA 2 (By similarity).				ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			skin(10)|ovary(2)	12						GAATCTTCTCGGAAAAGAATG	0.373													5	29					0	0	0.001168	0	0
PLCL1	5334	broad.mit.edu	37	2	198949102	198949102	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:198949102C>T	uc010fsp.2	+	2	1152	c.861C>T	c.(859-861)ATC>ATT	p.I287I	PLCL1_uc002uuv.3_Silent_p.I208I	NM_001114661	NP_001108133	Q15111	PLCL1_HUMAN	RecName: Full=Inactive phospholipase C-like protein 1;          Short=PLC-L1; AltName: Full=Phospholipase C-deleted in lung carcinoma; AltName: Full=Phospholipase C-related but catalytically inactive protein;          Short=PRIP;	287					intracellular signal transduction|lipid metabolic process	cytoplasm	calcium ion binding|phosphatidylinositol phospholipase C activity|signal transducer activity			ovary(1)|skin(1)	2					Quinacrine(DB01103)	TTAAAGAAATCCAGAAGAGCA	0.408													18	43					0	0	0.006122	0	0
NBEAL1	65065	broad.mit.edu	37	2	203948235	203948235	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:203948235G>T	uc002uzt.3	+	9	1311	c.978G>T	c.(976-978)CAG>CAT	p.Q326H		NM_001114132	NP_001107604	Q6ZS30	NBEL1_HUMAN	neurobeachin-like 1 isoform 3	326							binding			ovary(1)|skin(1)	2						TTGCTCTACAGATCAAAATGC	0.323													61	177					1.73933e-33	1.88885e-33	0.014410	1	0
ZDBF2	57683	broad.mit.edu	37	2	207172139	207172139	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:207172139C>T	uc002vbp.2	+	5	3137	c.2887C>T	c.(2887-2889)CCT>TCT	p.P963S		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	963							nucleic acid binding|zinc ion binding			ovary(3)	3						TTCTGATGTCCCTCTTCAGGC	0.383													4	36					0	0	0.009096	0	0
CPO	130749	broad.mit.edu	37	2	207833919	207833919	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:207833919G>A	uc002vby.2	+	9	930	c.884G>A	c.(883-885)AGA>AAA	p.R295K		NM_173077	NP_775100	Q8IVL8	CBPO_HUMAN	carboxypeptidase O precursor	295					proteolysis	extracellular region	metallocarboxypeptidase activity|zinc ion binding			large_intestine(1)|ovary(1)	2				LUSC - Lung squamous cell carcinoma(261;0.0744)|Epithelial(149;0.0807)|Lung(261;0.142)		GGGTCTTCAAGAGATTGGGCC	0.458													24	75					0	0	0.005443	0	0
CPS1	1373	broad.mit.edu	37	2	211540556	211540556	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:211540556C>T	uc002vee.3	+	36	4398	c.4266C>T	c.(4264-4266)TCC>TCT	p.S1422S	CPS1_uc010fur.2_Silent_p.S1428S|CPS1_uc010fus.2_Silent_p.S971S	NM_001875	NP_001866	P31327	CPSM_HUMAN	carbamoyl-phosphate synthetase 1 isoform b	1422					carbamoyl phosphate biosynthetic process|citrulline biosynthetic process|glutamine metabolic process|glycogen catabolic process|nitric oxide metabolic process|positive regulation of vasodilation|response to lipopolysaccharide|triglyceride catabolic process|urea cycle	mitochondrial nucleoid	ATP binding|carbamoyl-phosphate synthase (ammonia) activity			ovary(8)|central_nervous_system(3)|breast(1)|skin(1)	13				Epithelial(149;0.00697)|Lung(261;0.0521)|LUSC - Lung squamous cell carcinoma(261;0.0544)|all cancers(144;0.0843)		GCCTCTCTTCCATCAGAAAGT	0.448													6	38					0	0	0.001168	0	0
ERBB4	2066	broad.mit.edu	37	2	212286791	212286791	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:212286791C>T	uc002veg.1	-	24	3003	c.2905G>A	c.(2905-2907)GAA>AAA	p.E969K	ERBB4_uc002veh.1_Missense_Mutation_p.E969K|ERBB4_uc010zji.1_Missense_Mutation_p.E959K|ERBB4_uc010zjj.1_Missense_Mutation_p.E959K	NM_005235	NP_005226	Q15303	ERBB4_HUMAN	v-erb-a erythroblastic leukemia viral oncogene	969	Protein kinase.|Cytoplasmic (Potential).				cell proliferation|regulation of transcription, DNA-dependent|transcription, DNA-dependent|transmembrane receptor protein tyrosine kinase signaling pathway	basolateral plasma membrane|cytoplasm|integral to membrane|nucleus	ATP binding|protein binding|receptor signaling protein tyrosine kinase activity|transmembrane receptor protein tyrosine kinase activity			lung(21)|skin(5)|stomach(2)|breast(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	33		Renal(323;0.06)|Lung NSC(271;0.197)		UCEC - Uterine corpus endometrioid carcinoma (47;0.214)|Epithelial(149;5.86e-06)|all cancers(144;2.95e-05)|Lung(261;0.00244)|LUSC - Lung squamous cell carcinoma(224;0.00266)		GCAGCCAGTTCCTTAAATTTA	0.383										TSP Lung(8;0.080)			10	24					0	0	0.013537	0	0
PECR	55825	broad.mit.edu	37	2	216908654	216908654	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:216908654G>A	uc002vft.2	-	7	867	c.799C>T	c.(799-801)CTC>TTC	p.L267F	PECR_uc010zjq.1_RNA|PECR_uc002vfr.2_Missense_Mutation_p.L129F|PECR_uc002vfs.2_Missense_Mutation_p.L121F	NM_018441	NP_060911	Q9BY49	PECR_HUMAN	peroxisomal trans-2-enoyl-CoA reductase	267					fatty acid biosynthetic process|regulation of apoptosis	peroxisome	binding|trans-2-enoyl-CoA reductase (NADPH) activity				0		Renal(323;0.0327)		Epithelial(149;3.8e-06)|all cancers(144;0.000272)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Adenine(DB00173)	TGAGTATAGAGACTCCGGCCC	0.493													8	50					0	0	0.004482	0	0
MARCH4	57574	broad.mit.edu	37	2	217142513	217142513	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:217142513G>A	uc002vgb.2	-	3	2514	c.747C>T	c.(745-747)ATC>ATT	p.I249I		NM_020814	NP_065865	Q9P2E8	MARH4_HUMAN	membrane-associated ring finger (C3HC4) 4	249	Helical; (Potential).					Golgi membrane|Golgi stack|integral to membrane|trans-Golgi network	ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1		Renal(323;0.0854)		Epithelial(149;2.19e-05)|all cancers(144;0.00121)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(261;0.0125)		AAATACTGGCGATGAGGAAGA	0.562													6	60					0	0	0.001168	0	0
EPHA4	2043	broad.mit.edu	37	2	222428586	222428586	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:222428586G>A	uc002vmq.2	-	3	730	c.688C>T	c.(688-690)CGA>TGA	p.R230*	EPHA4_uc002vmr.2_Nonsense_Mutation_p.R230*|EPHA4_uc010zlm.1_Nonsense_Mutation_p.R171*|EPHA4_uc010zln.1_Nonsense_Mutation_p.R230*	NM_004438	NP_004429	P54764	EPHA4_HUMAN	ephrin receptor EphA4 precursor	230	Cys-rich.|Extracellular (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			lung(6)|large_intestine(2)|central_nervous_system(2)|urinary_tract(1)|skin(1)	12		Renal(207;0.0183)		Epithelial(121;5.38e-09)|all cancers(144;2.47e-06)|LUSC - Lung squamous cell carcinoma(224;0.0115)|Lung(261;0.0154)		CAGGAGCCTCGAACTTCCACC	0.502													11	72					0	0	0.010729	0	0
COL4A4	1286	broad.mit.edu	37	2	227945193	227945193	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:227945193C>T	uc010zlt.1	-	24	2423	c.1769G>A	c.(1768-1770)GGA>GAA	p.G590E		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	590	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		TCCAGCATGTCCATCCCGACC	0.448													20	81					0	0	0.003330	0	0
SPHKAP	80309	broad.mit.edu	37	2	228886639	228886639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:228886639C>T	uc002vpq.2	-	6	532	c.485G>A	c.(484-486)GGG>GAG	p.G162E	SPHKAP_uc002vpp.2_Missense_Mutation_p.G162E|SPHKAP_uc010zlx.1_Missense_Mutation_p.G162E	NM_001142644	NP_001136116	Q2M3C7	SPKAP_HUMAN	sphingosine kinase type 1-interacting protein	162						cytoplasm	protein binding			skin(5)|ovary(4)|lung(1)	10		Renal(207;0.025)|all_hematologic(139;0.15)|all_lung(227;0.204)|Acute lymphoblastic leukemia(138;0.205)|Esophageal squamous(248;0.23)		Epithelial(121;8.17e-11)|all cancers(144;7.92e-08)|Lung(261;0.0168)|LUSC - Lung squamous cell carcinoma(224;0.0232)		TGGTCTGTTCCCTCTTGCACA	0.433													5	21					0	0	0.000602	0	0
DNER	92737	broad.mit.edu	37	2	230231626	230231626	+	Missense_Mutation	SNP	C	T	T	rs150035332		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:230231626C>T	uc002vpv.2	-	12	2212	c.2065G>A	c.(2065-2067)GAG>AAG	p.E689K		NM_139072	NP_620711	Q8NFT8	DNER_HUMAN	delta-notch-like EGF repeat-containing	689	Cytoplasmic (Potential).				central nervous system development|endocytosis|neuron migration|Notch signaling pathway|synapse assembly	dendrite|early endosome|integral to membrane|plasma membrane	calcium ion binding|clathrin binding|transmembrane receptor activity			lung(5)|ovary(2)|skin(1)	8		all_lung(227;0.00413)|Renal(207;0.0113)|Lung NSC(271;0.0211)|all_hematologic(139;0.105)|Acute lymphoblastic leukemia(138;0.175)		Epithelial(121;1.4e-11)|all cancers(144;7.7e-09)|LUSC - Lung squamous cell carcinoma(224;0.034)|Lung(119;0.0375)		TTGCTGAACTCGCTGTCGATG	0.572													5	60					0	0	0.000602	0	0
SLC16A14	151473	broad.mit.edu	37	2	230910957	230910957	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:230910957C>T	uc002vqd.1	-	4	1248	c.885G>A	c.(883-885)AAG>AAA	p.K295K	FBXO36_uc010fxi.1_Intron|SLC16A14_uc002vqe.2_Silent_p.K295K|SLC16A14_uc002vqf.2_Silent_p.K295K	NM_152527	NP_689740	Q7RTX9	MOT14_HUMAN	solute carrier family 16 (monocarboxylic acid	295	Extracellular (Potential).					integral to membrane|plasma membrane	symporter activity			ovary(4)|skin(2)	6		Renal(207;0.025)|all_hematologic(139;0.122)|all_lung(227;0.149)|Acute lymphoblastic leukemia(138;0.164)		Epithelial(121;7.31e-13)|all cancers(144;5.1e-10)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00948)		CCTCGAAGCCCTTCCTGACTC	0.517													8	41					0	0	0.006214	0	0
COL6A3	1293	broad.mit.edu	37	2	238253035	238253035	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:238253035G>A	uc002vwl.2	-	36	7911	c.7626C>T	c.(7624-7626)TTC>TTT	p.F2542F	COL6A3_uc002vwo.2_Silent_p.F2336F|COL6A3_uc010znj.1_Silent_p.F1935F|COL6A3_uc002vwj.2_5'Flank|COL6A3_uc002vwp.1_Silent_p.F363F	NM_004369	NP_004360	P12111	CO6A3_HUMAN	alpha 3 type VI collagen isoform 1 precursor	2542	VWFA 11.|Nonhelical region.				axon guidance|cell adhesion|muscle organ development	collagen type VI|extracellular space	serine-type endopeptidase inhibitor activity			ovary(8)|central_nervous_system(6)|skin(2)|upper_aerodigestive_tract(1)|pancreas(1)	18		Breast(86;0.000301)|Renal(207;0.000966)|all_hematologic(139;0.067)|Ovarian(221;0.0694)|all_lung(227;0.0943)|Melanoma(123;0.203)		Epithelial(121;1.23e-21)|OV - Ovarian serous cystadenocarcinoma(60;1.34e-10)|Kidney(56;5.71e-09)|KIRC - Kidney renal clear cell carcinoma(57;1.51e-07)|BRCA - Breast invasive adenocarcinoma(100;0.00025)|Lung(119;0.0142)|LUSC - Lung squamous cell carcinoma(224;0.034)		GCCTTGTAAGGAACAAGGGGG	0.552													20	120					0	0	0.007413	0	0
OR6B3	150681	broad.mit.edu	37	2	240985478	240985478	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr2:240985478C>T	uc010zoe.1	-	1	12	c.12G>A	c.(10-12)GAG>GAA	p.E4E		NM_173351	NP_775486	Q8NGW1	OR6B3_HUMAN	olfactory receptor, family 6, subfamily B,	4	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		all_epithelial(40;1.64e-11)|Breast(86;0.000327)|Renal(207;0.00571)|Ovarian(221;0.104)|all_hematologic(139;0.182)|all_lung(227;0.229)|Melanoma(123;0.238)		Epithelial(121;1.05e-29)|all cancers(36;3.52e-28)|OV - Ovarian serous cystadenocarcinoma(60;4.63e-14)|Kidney(56;2.99e-09)|KIRC - Kidney renal clear cell carcinoma(57;3.23e-08)|BRCA - Breast invasive adenocarcinoma(100;1.56e-05)|Lung(119;0.00344)|LUSC - Lung squamous cell carcinoma(224;0.0148)|Colorectal(34;0.019)|COAD - Colon adenocarcinoma(134;0.141)		TGGTGACATTCTCCCCACTCA	0.597													5	37					0	0	0.000602	0	0
ANGPT4	51378	broad.mit.edu	37	20	861925	861925	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:861925G>A	uc002wei.2	-	5	943	c.840C>T	c.(838-840)TTC>TTT	p.F280F	ANGPT4_uc010zpn.1_Silent_p.F274F	NM_015985	NP_057069	Q9Y264	ANGP4_HUMAN	angiopoietin 4 precursor	280					anti-apoptosis|blood coagulation|cellular response to hypoxia|leukocyte migration|negative regulation of angiogenesis|negative regulation of blood vessel endothelial cell migration|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of peptidyl-tyrosine phosphorylation|signal transduction	extracellular space	receptor tyrosine kinase binding|transmembrane receptor protein tyrosine kinase activator activity			ovary(2)	2						CTGCCATTATGAAGGCTGCAA	0.567													7	25					0	0	0.001984	0	0
PLCB4	5332	broad.mit.edu	37	20	9364892	9364892	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:9364892G>A	uc002wnf.2	+	13	1034	c.898G>A	c.(898-900)GAA>AAA	p.E300K	PLCB4_uc010gbw.1_Missense_Mutation_p.E300K|PLCB4_uc010gbx.2_Missense_Mutation_p.E300K|PLCB4_uc002wne.2_Missense_Mutation_p.E300K|PLCB4_uc002wnh.2_Missense_Mutation_p.E147K	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	300					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						GATGTCAGATGAAAACGCCCC	0.413													8	64					0	0	0.008291	0	0
PAK7	57144	broad.mit.edu	37	20	9520187	9520187	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:9520187G>A	uc002wnl.2	-	11	2627	c.2082C>T	c.(2080-2082)CTC>CTT	p.L694L	PAK7_uc002wnk.2_Silent_p.L694L|PAK7_uc002wnj.2_Silent_p.L694L|PAK7_uc010gby.1_Silent_p.L607L	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	694	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GATGTCCGAGGAGTTCCTGGG	0.517													30	147					0	0	0.010818	0	0
PAK7	57144	broad.mit.edu	37	20	9624876	9624876	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:9624876C>T	uc002wnl.2	-	4	646	c.101G>A	c.(100-102)GGC>GAC	p.G34D	PAK7_uc002wnk.2_Missense_Mutation_p.G34D|PAK7_uc002wnj.2_Missense_Mutation_p.G34D|PAK7_uc010gby.1_Missense_Mutation_p.G34D	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	34	Linker.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTGGGGAAGGCCGGTAAACTT	0.498													21	47					0	0	0.008871	0	0
ANKRD5	63926	broad.mit.edu	37	20	10035229	10035229	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:10035229C>T	uc002wno.2	+	10	2547	c.2154C>T	c.(2152-2154)ATC>ATT	p.I718I	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Silent_p.I718I|ANKRD5_uc010gbz.2_Silent_p.I529I	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	718							calcium ion binding			ovary(1)|breast(1)	2						AAGTGGATATCACATTTATTC	0.363													4	40					0	0	0.001168	0	0
ANKRD5	63926	broad.mit.edu	37	20	10036195	10036195	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:10036195G>A	uc002wno.2	+	11	2611	c.2218G>A	c.(2218-2220)GAA>AAA	p.E740K	uc002wnn.1_Intron|ANKRD5_uc002wnp.2_Missense_Mutation_p.E740K|ANKRD5_uc010gbz.2_Missense_Mutation_p.E551K	NM_022096	NP_071379	Q9NU02	ANKR5_HUMAN	ankyrin repeat domain protein 5	740							calcium ion binding			ovary(1)|breast(1)	2						CAGGAAGAGGGAACTACGGCG	0.458													7	22					0	0	0.001984	0	0
SLC24A3	57419	broad.mit.edu	37	20	19665960	19665960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:19665960G>A	uc002wrl.2	+	12	1476	c.1279G>A	c.(1279-1281)GAC>AAC	p.D427N		NM_020689	NP_065740	Q9HC58	NCKX3_HUMAN	solute carrier family 24	427	Cytoplasmic (Potential).|Poly-Glu.					integral to membrane|plasma membrane	calcium, potassium:sodium antiporter activity|symporter activity			ovary(1)	1						ggaagaggaggacgaggatga	0.383													14	48					0	0	0.004007	0	0
C20orf26	26074	broad.mit.edu	37	20	20168671	20168671	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:20168671G>C	uc002wru.2	+	14	1559	c.1483G>C	c.(1483-1485)GAC>CAC	p.D495H	C20orf26_uc010zse.1_Missense_Mutation_p.D475H	NM_015585	NP_056400	Q8NHU2	CT026_HUMAN	hypothetical protein LOC26074	495										ovary(3)|pancreas(1)	4				READ - Rectum adenocarcinoma(2;0.171)		GGAGGACTTAGACCGTTACAA	0.443													7	72					0	0	0.003080	0	0
FOXS1	2307	broad.mit.edu	37	20	30432705	30432705	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:30432705G>A	uc002wwt.1	-	1	716	c.641C>T	c.(640-642)TCA>TTA	p.S214L		NM_004118	NP_004109	O43638	FOXS1_HUMAN	forkhead box S1	214					anti-apoptosis|artery morphogenesis|blood vessel remodeling|camera-type eye development|cardiac muscle cell proliferation|collagen fibril organization|embryonic heart tube development|insulin receptor signaling pathway|lymphangiogenesis|negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|neural crest cell fate commitment|neuromuscular process controlling balance|Notch signaling pathway|ossification|paraxial mesodermal cell fate commitment|patterning of blood vessels|positive regulation of multicellular organism growth|positive regulation of transcription from RNA polymerase II promoter|regulation of blood vessel size|regulation of organ growth|somitogenesis|vascular endothelial growth factor receptor signaling pathway|vasculogenesis|ventricular cardiac muscle tissue morphogenesis	transcription factor complex	chromatin DNA binding|DNA bending activity|double-stranded DNA binding|promoter binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding			ovary(1)	1						CGCTGGGCATGAGGAAGATGA	0.617													9	46					0	0	0.006214	0	0
C20orf114	92747	broad.mit.edu	37	20	31877752	31877752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:31877752G>A	uc002wyw.1	+	4	480	c.319G>A	c.(319-321)GAG>AAG	p.E107K	C20orf114_uc010gej.1_Missense_Mutation_p.E107K	NM_033197	NP_149974	Q8TDL5	LPLC1_HUMAN	LPLUNC1 protein precursor	107						extracellular space	lipid binding			central_nervous_system(2)|skin(2)	4						CAATGACCAGGAGCTGCTAGT	0.552													16	50					0	0	0.004990	0	0
FAM83C	128876	broad.mit.edu	37	20	33879675	33879675	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:33879675G>A	uc010zux.1	-	1	551	c.433C>T	c.(433-435)CAG>TAG	p.Q145*	FAM83C_uc002xcb.1_5'UTR	NM_178468	NP_848563	Q9BQN1	FA83C_HUMAN	hypothetical protein LOC128876	145										ovary(2)	2			BRCA - Breast invasive adenocarcinoma(18;0.00252)			ACCACAGCCTGGGTGGGGCTG	0.597													22	116					0	0	0.003330	0	0
TGM2	7052	broad.mit.edu	37	20	36789988	36789988	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:36789988C>T	uc002xhr.2	-	2	124	c.24G>A	c.(22-24)GAG>GAA	p.E8E	TGM2_uc010zvx.1_Silent_p.E8E|TGM2_uc010zvy.1_Intron|TGM2_uc002xhs.1_Silent_p.E8E|TGM2_uc002xht.2_Silent_p.E8E|TGM2_uc002xhu.3_Silent_p.E8E	NM_004613	NP_004604	P21980	TGM2_HUMAN	transglutaminase 2 isoform a	8					apoptotic cell clearance|peptide cross-linking|positive regulation of cell adhesion		acyltransferase activity|metal ion binding|protein binding|protein-glutamine gamma-glutamyltransferase activity			large_intestine(1)|lung(1)|ovary(1)	3		Myeloproliferative disorder(115;0.00878)			L-Glutamine(DB00130)	GATCACACCTCTCTAAGACCA	0.622													19	63					0	0	0.010504	0	0
KIAA1755	85449	broad.mit.edu	37	20	36859609	36859609	+	Silent	SNP	G	A	A	rs138852455		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:36859609G>A	uc002xhy.1	-	5	2138	c.1866C>T	c.(1864-1866)ATC>ATT	p.I622I	KIAA1755_uc002xhz.1_Silent_p.I622I	NM_001029864	NP_001025035	Q5JYT7	K1755_HUMAN	hypothetical protein LOC85449	622										ovary(4)|pancreas(1)	5		Myeloproliferative disorder(115;0.00874)				CTTACCTGGGGATGGTACACA	0.612													10	18					0	0	0.006214	0	0
CHD6	84181	broad.mit.edu	37	20	40053932	40053932	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:40053932T>C	uc002xka.1	-	29	4410	c.4232A>G	c.(4231-4233)AAG>AGG	p.K1411R		NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	1411					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				GCACAGTTCCTTGCGGTTGCA	0.547													7	49					0	0	0.001984	0	0
PTPRT	11122	broad.mit.edu	37	20	40714415	40714415	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:40714415C>T	uc002xkg.2	-	28	4109	c.3925G>A	c.(3925-3927)GAC>AAC	p.D1309N	PTPRT_uc010ggj.2_Missense_Mutation_p.D1328N|PTPRT_uc010ggi.2_Missense_Mutation_p.D512N	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1309	Cytoplasmic (Potential).|Tyrosine-protein phosphatase 2.				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				ATGTCCTCGTCGATGTCTGCG	0.557													7	81					0	0	0.003080	0	0
PTPRT	11122	broad.mit.edu	37	20	40733322	40733322	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:40733322C>T	uc002xkg.2	-	25	3611	c.3427G>A	c.(3427-3429)GCG>ACG	p.A1143T	PTPRT_uc010ggj.2_Missense_Mutation_p.A1162T|PTPRT_uc010ggi.2_Missense_Mutation_p.A346T	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	1143	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				CAGAGGCACGCTTCCAGGATG	0.522													11	44					0	0	0.010729	0	0
PTPRT	11122	broad.mit.edu	37	20	40743942	40743942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:40743942C>T	uc002xkg.2	-	22	3180	c.2996G>A	c.(2995-2997)CGA>CAA	p.R999Q	PTPRT_uc010ggj.2_Missense_Mutation_p.R1018Q|PTPRT_uc010ggi.2_Missense_Mutation_p.R202Q	NM_007050	NP_008981	O14522	PTPRT_HUMAN	protein tyrosine phosphatase, receptor type, T	999	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				homophilic cell adhesion|transmembrane receptor protein tyrosine kinase signaling pathway	cell surface|integral to membrane|plasma membrane	alpha-catenin binding|beta-catenin binding|cadherin binding|delta-catenin binding|gamma-catenin binding|protein tyrosine phosphatase activity|receptor activity			skin(8)|ovary(7)|lung(5)	20		Myeloproliferative disorder(115;0.00452)|Lung NSC(126;0.0573)|all_lung(126;0.0783)				TGGCCAGTATCGCACACATTT	0.438													15	46					0	0	0.004007	0	0
WFDC3	140686	broad.mit.edu	37	20	44416617	44416617	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:44416617C>T	uc002xpf.1	-	4	300	c.216G>A	c.(214-216)AGG>AGA	p.R72R	WFDC3_uc002xpj.1_RNA|WFDC3_uc002xph.1_RNA|WFDC3_uc010ghh.1_RNA	NM_080614	NP_542181	Q8IUB2	WFDC3_HUMAN	WAP four-disulfide core domain 3 precursor	72	WAP 2.					extracellular region	serine-type endopeptidase inhibitor activity				0		Myeloproliferative disorder(115;0.0122)				AATCTCTTTTCCTCCCTGTAG	0.308													7	23					0	0	0.003080	0	0
NCOA5	57727	broad.mit.edu	37	20	44699170	44699171	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:44699170_44699171GG>AA	uc002xrd.2	-	2	571_572	c.43_44CC>TT	c.(43-45)CCA>TTA	p.P15L	NCOA5_uc002xrc.2_5'UTR|NCOA5_uc002xre.2_Missense_Mutation_p.P15L	NM_020967	NP_066018	Q9HCD5	NCOA5_HUMAN	nuclear receptor coactivator 5	15	Arg/Asp-rich (mixed charge).|Transcription repression.				regulation of transcription, DNA-dependent|transcription, DNA-dependent|translation	nucleus	aminoacyl-tRNA ligase activity|ATP binding			central_nervous_system(1)|skin(1)	2		Myeloproliferative disorder(115;0.0122)				AAAGCCATATGGATCCCTGTGG	0.505													10	70					0	0	0.004672	0	0
EYA2	2139	broad.mit.edu	37	20	45702961	45702961	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:45702961C>T	uc002xsm.2	+	7	1022	c.648C>T	c.(646-648)TCC>TCT	p.S216S	EYA2_uc010ghp.2_Silent_p.S216S|EYA2_uc002xsn.2_Silent_p.S221S|EYA2_uc002xso.2_Silent_p.S216S|EYA2_uc002xsp.2_Silent_p.S216S|EYA2_uc002xsq.2_Silent_p.S216S	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	216					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				ACCAGAGTTCCGAGTCACTTG	0.597													12	73					0	0	0.013537	0	0
ZMYND8	23613	broad.mit.edu	37	20	45853154	45853154	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:45853154G>A	uc002xta.1	-	19	3266	c.3012C>T	c.(3010-3012)ATC>ATT	p.I1004I	ZMYND8_uc010ghq.1_Silent_p.I635I|ZMYND8_uc010ghr.1_Silent_p.I906I|ZMYND8_uc002xst.1_Silent_p.I886I|ZMYND8_uc002xsu.1_Silent_p.I877I|ZMYND8_uc002xsv.1_Silent_p.I932I|ZMYND8_uc002xsw.1_Silent_p.I710I|ZMYND8_uc002xsx.1_Silent_p.I710I|ZMYND8_uc002xsy.1_Silent_p.I933I|ZMYND8_uc002xsz.1_Silent_p.I895I|ZMYND8_uc010zxy.1_Silent_p.I1031I|ZMYND8_uc002xtb.1_Silent_p.I978I|ZMYND8_uc002xss.2_Silent_p.I1004I|ZMYND8_uc010zxz.1_Silent_p.I872I|ZMYND8_uc002xtc.1_Silent_p.I978I|ZMYND8_uc002xtd.1_Silent_p.I953I|ZMYND8_uc002xte.1_Silent_p.I958I|ZMYND8_uc010zya.1_Silent_p.I1004I|ZMYND8_uc002xtf.1_Silent_p.I1024I|ZMYND8_uc002xsr.1_Silent_p.I103I	NM_012408	NP_036540	Q9ULU4	PKCB1_HUMAN	zinc finger, MYND-type containing 8 isoform b	1004							protein binding|zinc ion binding			central_nervous_system(2)|urinary_tract(1)|ovary(1)|skin(1)	5			Epithelial(1;0.0289)|all cancers(1;0.0962)|OV - Ovarian serous cystadenocarcinoma(1;0.154)			TCACCTCGGCGATGAGCCGGT	0.612													33	100					0	0	0.012213	0	0
DDX27	55661	broad.mit.edu	37	20	47843021	47843021	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:47843021C>T	uc002xuh.2	+	7	809	c.748C>T	c.(748-750)CCT>TCT	p.P250S		NM_017895	NP_060365	Q96GQ7	DDX27_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 27	250	Helicase ATP-binding.					nucleus	ATP binding|ATP-dependent helicase activity|nucleic acid binding|protein binding			kidney(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.000899)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			GGCGTGCATACCTGTGGGTCT	0.587													6	59					0	0	0.003080	0	0
KCNG1	3755	broad.mit.edu	37	20	49626318	49626318	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:49626318G>T	uc002xwa.3	-	2	853	c.558C>A	c.(556-558)GAC>GAA	p.D186E	KCNG1_uc002xwb.2_Missense_Mutation_p.D186E	NM_002237	NP_002228	Q9UIX4	KCNG1_HUMAN	potassium voltage-gated channel, subfamily G,	186	Cytoplasmic (Potential).					voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)|central_nervous_system(1)	2						CCAGCGCGTCGTCCTCTTCCT	0.711													14	45					0.00244969	0.00262036	0.002450	1	0
TSHZ2	128553	broad.mit.edu	37	20	51870136	51870136	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:51870136G>A	uc002xwo.2	+	2	1095	c.139G>A	c.(139-141)GAC>AAC	p.D47N		NM_173485	NP_775756	Q9NRE2	TSH2_HUMAN	teashirt zinc finger homeobox 2	47					multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(5)|haematopoietic_and_lymphoid_tissue(1)	6			STAD - Stomach adenocarcinoma(23;0.1)			GGGTGGCAATGACACAGGGAC	0.408													5	34					0	0	0.000602	0	0
ZNF831	128611	broad.mit.edu	37	20	57769657	57769658	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:57769657_57769658CC>TT	uc002yan.2	+	1	3583_3584	c.3583_3584CC>TT	c.(3583-3585)CCC>TTC	p.P1195F		NM_178457	NP_848552	Q5JPB2	ZN831_HUMAN	zinc finger protein 831	1195						intracellular	nucleic acid binding|zinc ion binding			skin(13)|ovary(1)	14	all_lung(29;0.0085)					TGTCCCTCTGCCCGCGGAGCAG	0.634													5	27					0	0	0.004672	0	0
CHRNA4	1137	broad.mit.edu	37	20	61982010	61982010	+	Silent	SNP	G	A	A	rs121912254		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:61982010G>A	uc002yes.2	-	5	931	c.753C>T	c.(751-753)ATC>ATT	p.I251I	CHRNA4_uc002yet.1_Silent_p.I75I|CHRNA4_uc011aaw.1_RNA|CHRNA4_uc010gke.1_Silent_p.I180I|CHRNA4_uc002yev.1_Silent_p.I75I|CHRNA4_uc010gkf.1_Silent_p.I75I	NM_000744	NP_000735	P43681	ACHA4_HUMAN	cholinergic receptor, nicotinic, alpha 4 subunit	251	Helical; (Potential).				B cell activation|behavioral response to nicotine|calcium ion transport|cognition|DNA repair|membrane depolarization|regulation of action potential|regulation of dopamine secretion|regulation of inhibitory postsynaptic membrane potential|response to hypoxia|response to oxidative stress|sensory perception of pain|synaptic transmission, cholinergic	cell junction|dendrite|external side of plasma membrane|membrane fraction|neuronal cell body|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	acetylcholine receptor activity|nicotinic acetylcholine-activated cation-selective channel activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;1.71e-10)				Nicotine(DB00184)|Varenicline(DB01273)	GGCAGGGGATGATGAGGTTGA	0.592													5	42					0	0	0.001168	0	0
OPRL1	4987	broad.mit.edu	37	20	62724142	62724142	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr20:62724142C>T	uc002yic.2	+	3	471	c.69C>T	c.(67-69)TCC>TCT	p.S23S	OPRL1_uc002yid.2_Silent_p.S23S|OPRL1_uc002yif.3_Silent_p.S23S	NM_182647	NP_872588	P41146	OPRX_HUMAN	opiate receptor-like 1	23	Extracellular (Potential).				elevation of cytosolic calcium ion concentration|inhibition of adenylate cyclase activity by G-protein signaling pathway|sensory perception	integral to plasma membrane	protein binding|X-opioid receptor activity			central_nervous_system(1)|skin(1)	2	all_cancers(38;4.74e-11)|all_epithelial(29;1.33e-12)|Lung NSC(23;3.27e-09)|all_lung(23;1.02e-08)					GCAACCTGTCCCTCCTGAGCC	0.647													24	65					0	0	0.004656	0	0
KRTAP13-1	140258	broad.mit.edu	37	21	31768587	31768587	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr21:31768587G>A	uc002yoa.2	+	1	196	c.183G>A	c.(181-183)TGG>TGA	p.W61*		NM_181599	NP_853630	Q8IUC0	KR131_HUMAN	keratin associated protein 13-1	61	5 X 10 AA approximate repeats.|2.					intermediate filament				ovary(1)	1						AGACCTGCTGGGAGCCCACCA	0.607													4	29					0	0	0.000602	0	0
TCP10L	140290	broad.mit.edu	37	21	33951009	33951009	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr21:33951009G>A	uc002ypw.3	-	4	609	c.493C>T	c.(493-495)CCA>TCA	p.P165S		NM_144659	NP_653260	Q9NV44	CU077_HUMAN	T-complex 10A-2	Error:Variant_position_missing_in_Q9NV44_after_alignment											0						GTCACCTTTGGAGGAGCTGAA	0.473													14	75					0	0	0.004007	0	0
ITSN1	6453	broad.mit.edu	37	21	35258600	35258600	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr21:35258600A>G	uc002yta.1	+	39	5121	c.4853A>G	c.(4852-4854)AAC>AGC	p.N1618S	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Missense_Mutation_p.N1613S|ITSN1_uc002ytj.2_Missense_Mutation_p.N1557S|ITSN1_uc010gmm.1_RNA|ITSN1_uc010gmn.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1618	C2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						GGAAAGAGCAACCCGTACTGT	0.438													4	21					0	0	0.001168	0	0
SIM2	6493	broad.mit.edu	37	21	38098503	38098503	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr21:38098503G>A	uc002yvr.2	+	6	683	c.627G>A	c.(625-627)GGG>GGA	p.G209G	SIM2_uc002yvq.2_Silent_p.G209G	NM_005069	NP_005060	Q14190	SIM2_HUMAN	single-minded homolog 2 long isoform	209					cell differentiation|nervous system development	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			central_nervous_system(1)	1						AGATTGTGGGGCTGGTGGCCG	0.567													6	75					0	0	0.003080	0	0
DSCAM	1826	broad.mit.edu	37	21	42080488	42080488	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr21:42080488G>A	uc002yyq.1	-	2	705	c.253C>T	c.(253-255)CCC>TCC	p.P85S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	85	Extracellular (Potential).|Ig-like C2-type 1.				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				GGAGGGAAGGGGAAAATTTGG	0.498													8	52					0	0	0.003080	0	0
CCT8L2	150160	broad.mit.edu	37	22	17072290	17072290	+	Missense_Mutation	SNP	C	T	T	rs141686687		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:17072290C>T	uc002zlp.1	-	1	1411	c.1151G>A	c.(1150-1152)GGG>GAG	p.G384E		NM_014406	NP_055221	Q96SF2	TCPQM_HUMAN	T-complex protein 1	384					cellular protein metabolic process	cytoplasm	anion channel activity|ATP binding|calcium-activated potassium channel activity			ovary(1)	1	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				ACTCCGCAGCCCCTGGGTGGT	0.567													14	61					0	0	0.001855	0	0
XKR3	150165	broad.mit.edu	37	22	17288747	17288747	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:17288747A>C	uc002zlv.2	-	2	315	c.217T>G	c.(217-219)TTT>GTT	p.F73V	XKR3_uc011agf.1_Missense_Mutation_p.F73V	NM_175878	NP_787074	Q5GH77	XKR3_HUMAN	X Kell blood group precursor-related family,	73	Helical; (Potential).					integral to membrane|plasma membrane				large_intestine(1)|ovary(1)|skin(1)	3	all_hematologic(4;0.00567)|Acute lymphoblastic leukemia(84;0.0977)	all_epithelial(15;0.0157)|Lung NSC(13;0.147)|all_lung(157;0.175)				ACAATAATAAAGCTGATGGTA	0.358													9	42					0	0	0.004482	0	0
ZNF280A	129025	broad.mit.edu	37	22	22868490	22868490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:22868490C>T	uc002zwe.2	-	2	1718	c.1465G>A	c.(1465-1467)GAA>AAA	p.E489K	LOC96610_uc011aim.1_Intron	NM_080740	NP_542778	P59817	Z280A_HUMAN	zinc finger protein 280A	489					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1	all_hematologic(9;0.0135)|Acute lymphoblastic leukemia(84;0.17)	all_hematologic(6;1.74e-30)|Acute lymphoblastic leukemia(6;7.75e-22)		READ - Rectum adenocarcinoma(21;0.145)		ACTTTTGTTTCACGAGGGAAC	0.403													5	49					0	0	0.001984	0	0
IGLL3	91353	broad.mit.edu	37	22	25714033	25714033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:25714033C>T	uc003abr.2	+	1	146	c.46C>T	c.(46-48)CCA>TCA	p.P16S		NM_001013618	NP_001013640			immunoglobulin lambda-like polypeptide 3												0						CCCAGCGTTGCCATCAGCACC	0.617													4	8					0	0	0.009096	0	0
MYO18B	84700	broad.mit.edu	37	22	26294333	26294333	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:26294333G>A	uc003abz.1	+	29	4978	c.4728G>A	c.(4726-4728)AGG>AGA	p.R1576R	MYO18B_uc003aca.1_Silent_p.R1457R|MYO18B_uc010guy.1_Silent_p.R1458R|MYO18B_uc010guz.1_Silent_p.R1456R|MYO18B_uc011aka.1_Silent_p.R730R|MYO18B_uc011akb.1_Silent_p.R1089R	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	1576	Potential.|Tail.					nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						AACTGAAGAGGAAGTGCCACC	0.493													9	47					0	0	0.004482	0	0
MYO18B	84700	broad.mit.edu	37	22	26423285	26423285	+	Missense_Mutation	SNP	C	T	T	rs149103381	by1000genomes	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:26423285C>T	uc003abz.1	+	43	7595	c.7345C>T	c.(7345-7347)CGG>TGG	p.R2449W	MYO18B_uc003aca.1_Missense_Mutation_p.R2330W|MYO18B_uc010guy.1_Missense_Mutation_p.R2331W|MYO18B_uc010guz.1_Missense_Mutation_p.R2329W|MYO18B_uc011aka.1_Missense_Mutation_p.R1603W|MYO18B_uc011akb.1_Missense_Mutation_p.R1962W|MYO18B_uc010gva.1_Missense_Mutation_p.R432W|MYO18B_uc010gvb.1_RNA	NM_032608	NP_115997	Q8IUG5	MY18B_HUMAN	myosin XVIIIB	2449						nucleus|sarcomere|unconventional myosin complex	actin binding|ATP binding|motor activity			ovary(5)|central_nervous_system(3)|large_intestine(2)|breast(2)	12						CCCAGCTATCCGGAAGCCCCA	0.552													10	82					0	0	0.008291	0	0
THOC5	8563	broad.mit.edu	37	22	29924434	29924434	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:29924434G>A	uc003afr.2	-	11	1282	c.947C>T	c.(946-948)GCC>GTC	p.A316V	THOC5_uc003afq.2_5'UTR|THOC5_uc003afs.2_Missense_Mutation_p.A316V|THOC5_uc003aft.2_Missense_Mutation_p.A316V|THOC5_uc003afu.2_Missense_Mutation_p.A316V|THOC5_uc010gvo.2_Missense_Mutation_p.A60V	NM_001002878	NP_001002878	Q13769	THOC5_HUMAN	THO complex 5	316					intronless viral mRNA export from host nucleus|monocyte differentiation|mRNA processing|primitive hemopoiesis|RNA splicing	cytoplasm|intermediate filament cytoskeleton|THO complex part of transcription export complex	protein binding|RNA binding			breast(3)	3						CTCCTCCTCGGCATCTGAGTC	0.567													27	62					0	0	0.009535	0	0
APOL3	80833	broad.mit.edu	37	22	36538042	36538042	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:36538042C>T	uc003aot.2	-	3	453	c.415G>A	c.(415-417)GAA>AAA	p.E139K	APOL3_uc003aoq.2_Missense_Mutation_p.E68K|APOL3_uc003aor.2_Missense_Mutation_p.E68K|APOL3_uc003aos.2_Missense_Mutation_p.E68K|APOL3_uc003aou.2_5'UTR|APOL3_uc003aov.2_5'UTR	NM_145640	NP_663615	O95236	APOL3_HUMAN	apolipoprotein L3 isoform 1	139					inflammatory response|lipoprotein metabolic process|positive regulation of I-kappaB kinase/NF-kappaB cascade	cytoplasm|extracellular region	lipid binding|lipid transporter activity|signal transducer activity				0						TGCACATATTCGTCCTCAATA	0.428													11	38					0	0	0.008291	0	0
CSF2RB	1439	broad.mit.edu	37	22	37322096	37322096	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:37322096C>T	uc003aqa.3	+	4	485	c.268C>T	c.(268-270)CGC>TGC	p.R90C	CSF2RB_uc003aqc.3_Missense_Mutation_p.R90C	NM_000395	NP_000386	P32927	IL3RB_HUMAN	colony stimulating factor 2 receptor, beta	90	Extracellular (Potential).				respiratory gaseous exchange	granulocyte macrophage colony-stimulating factor receptor complex	cytokine receptor activity			skin(2)|pancreas(1)	3					Sargramostim(DB00020)	CCCCCATCCCCGCTGCGTGCC	0.607													7	41					0	0	0.004482	0	0
SREBF2	6721	broad.mit.edu	37	22	42273334	42273334	+	Silent	SNP	C	T	T	rs146289041		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:42273334C>T	uc003bbi.2	+	8	1657	c.1488C>T	c.(1486-1488)CCC>CCT	p.P496P	WBP2NL_uc011ape.1_Intron|LOC339674_uc003bba.1_Intron|SREBF2_uc003bbj.2_RNA	NM_004599	NP_004590	Q12772	SRBP2_HUMAN	sterol regulatory element-binding transcription	496	Helical; (Potential).			NP->FL: Loss of cleavage by S2P.|P->L: Reduced cleavage by S2P.	cholesterol metabolic process	ER to Golgi transport vesicle membrane|Golgi membrane|nucleus|SREBP-SCAP-Insig complex	protein C-terminus binding			breast(2)|ovary(1)|central_nervous_system(1)	4						CCTTTAACCCCCTGACTTCCC	0.597													12	90					0	0	0.013537	0	0
PRR5-ARHGAP8	553158	broad.mit.edu	37	22	45110508	45110508	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:45110508G>A	uc003bfd.2	+	2	444	c.172G>A	c.(172-174)GGG>AGG	p.G58R	PRR5_uc003bew.1_Missense_Mutation_p.G49R|PRR5_uc003bex.1_5'UTR|PRR5_uc010gzt.1_Missense_Mutation_p.G81R|PRR5_uc010gzu.1_Intron|PRR5_uc003bey.1_Missense_Mutation_p.G49R|PRR5_uc003bez.1_5'UTR|PRR5-ARHGAP8_uc003bfc.2_Missense_Mutation_p.G58R|PRR5-ARHGAP8_uc011aqi.1_Missense_Mutation_p.G49R|PRR5_uc003bfa.1_5'UTR|PRR5_uc003bfb.1_Missense_Mutation_p.G58R|PRR5_uc003bfe.1_RNA	NM_181335	NP_851852			Rho GTPase activating protein 8 isoform 2											skin(2)	2						CCAGCGCAAGGGGCTGCCCGA	0.647													4	71					0	0	0.000602	0	0
GRAMD4	23151	broad.mit.edu	37	22	47062751	47062751	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:47062751C>T	uc003bhx.2	+	9	878	c.839C>T	c.(838-840)CCC>CTC	p.P280L	GRAMD4_uc010had.2_Missense_Mutation_p.P219L	NM_015124	NP_055939	Q6IC98	GRAM4_HUMAN	death-inducing-protein	280					apoptosis	integral to membrane|mitochondrial membrane				ovary(1)	1		Breast(42;0.00571)|Ovarian(80;0.00965)|all_neural(38;0.0416)		UCEC - Uterine corpus endometrioid carcinoma (28;0.0178)|BRCA - Breast invasive adenocarcinoma(115;0.166)		AGCATCGTGCCCGAAGTGTCT	0.617													9	98					0	0	0.004482	0	0
MOV10L1	54456	broad.mit.edu	37	22	50537973	50537973	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr22:50537973G>A	uc003bjj.2	+	3	467	c.384G>A	c.(382-384)GTG>GTA	p.V128V	MOV10L1_uc003bjk.3_Silent_p.V128V|MOV10L1_uc011arp.1_Silent_p.V108V|MOV10L1_uc010han.2_Silent_p.V108V	NM_018995	NP_061868	Q9BXT6	M10L1_HUMAN	MOV10-like 1 isoform 1	128					germ cell development|multicellular organismal development|spermatogenesis		ATP binding|ATP-dependent RNA helicase activity|magnesium ion binding|RNA binding			ovary(2)|skin(1)	3		all_cancers(38;3.31e-11)|all_epithelial(38;5.69e-10)|all_lung(38;3.73e-05)|Breast(42;0.000525)|Lung NSC(38;0.000954)|Ovarian(80;0.0367)|Lung SC(80;0.114)		LUAD - Lung adenocarcinoma(64;0.0215)|BRCA - Breast invasive adenocarcinoma(115;0.24)		CTTCCCTGGTGGAGGGCGCAG	0.527													8	45					0	0	0.004482	0	0
GRM7	2917	broad.mit.edu	37	3	7620939	7620939	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:7620939G>A	uc003bqm.2	+	8	2620	c.2346G>A	c.(2344-2346)GAG>GAA	p.E782E	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.E782E|GRM7_uc003bql.2_Silent_p.E782E|GRM7_uc003bqn.1_Silent_p.E365E|GRM7_uc010hch.1_Silent_p.E293E	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	782	Cytoplasmic (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GTGTACCCGAGAATTTTAACG	0.438													8	32					0	0	0.004482	0	0
NUP210	23225	broad.mit.edu	37	3	13401897	13401897	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:13401897G>A	uc003bxv.1	-	15	2110	c.2027C>T	c.(2026-2028)TCC>TTC	p.S676F	NUP210_uc003bxx.2_Missense_Mutation_p.S348F	NM_024923	NP_079199	Q8TEM1	PO210_HUMAN	nucleoporin 210 precursor	676	Lumenal (Probable).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore				ovary(3)|large_intestine(3)|skin(3)|pancreas(1)|liver(1)	11	all_neural(104;0.187)					GAAGAATTTGGACGGCTCGAG	0.567													7	28					0	0	0.003080	0	0
COLQ	8292	broad.mit.edu	37	3	15529735	15529735	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:15529735G>A	uc003bzx.2	-	3	425	c.299C>T	c.(298-300)TCC>TTC	p.S100F	HACL1_uc011avr.1_RNA|COLQ_uc003bzv.2_Missense_Mutation_p.S90F|COLQ_uc003bzz.2_Missense_Mutation_p.S100F|COLQ_uc010heo.2_Intron|COLQ_uc003cac.1_RNA|COLQ_uc003cae.1_5'UTR|COLQ_uc003cad.1_RNA	NM_005677	NP_005668	Q9Y215	COLQ_HUMAN	acetylcholinesterase collagen-like tail subunit	100	Collagen-like 1.				acetylcholine catabolic process in synaptic cleft|asymmetric protein localization	basal lamina|cell junction|collagen|extracellular space|synaptic cleft					0						AGGCCCAGGGGAGCCTAGCGA	0.582													17	59					0	0	0.007413	0	0
EFHB	151651	broad.mit.edu	37	3	19959793	19959793	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:19959793C>T	uc003cbl.3	-	4	1304	c.1108G>A	c.(1108-1110)GAT>AAT	p.D370N	EFHB_uc003cbm.2_Missense_Mutation_p.D240N	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	370					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						GGTGCTTGATCGTGAGATTTT	0.378													77	230					0	0	0.014410	0	0
TRANK1	9881	broad.mit.edu	37	3	36873885	36873885	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:36873885C>T	uc003cgj.2	-	12	5709	c.5407G>A	c.(5407-5409)GAA>AAA	p.E1803K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2353					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TCCATATTTTCATCATCCCTG	0.478													25	65					0	0	0.003954	0	0
TRANK1	9881	broad.mit.edu	37	3	36873917	36873917	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:36873917T>G	uc003cgj.2	-	12	5677	c.5375A>C	c.(5374-5376)AAA>ACA	p.K1792T		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	2342					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CATGCCAAATTTCCCTTCTAT	0.483													25	68					0	0	0.004656	0	0
TRANK1	9881	broad.mit.edu	37	3	36898891	36898891	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:36898891C>T	uc003cgj.2	-	3	842	c.540G>A	c.(538-540)CCG>CCA	p.P180P		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	730					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						CACCCAGAGTCGGCTTGTCAT	0.577													18	40					0	0	0.004990	0	0
TRANK1	9881	broad.mit.edu	37	3	36899257	36899257	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:36899257G>T	uc003cgj.2	-	3	476	c.174C>A	c.(172-174)AAC>AAA	p.N58K		NM_014831	NP_055646	O15050	TRNK1_HUMAN	lupus brain antigen 1	608					DNA repair		ATP binding|ATP-dependent DNA helicase activity|DNA binding			ovary(1)|central_nervous_system(1)	2						TCCTCCTCCTGTTCTCCATCA	0.537													17	100					9.16793e-09	9.88077e-09	0.004990	1	0
SCN11A	11280	broad.mit.edu	37	3	38938483	38938483	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:38938483C>T	uc011ays.1	-	14	2455	c.2256G>A	c.(2254-2256)GGG>GGA	p.G752G	SCN11A_uc010hhn.1_5'Flank	NM_014139	NP_054858	Q9UI33	SCNBA_HUMAN	sodium channel, voltage-gated, type XI, alpha	752	II.				response to drug	voltage-gated sodium channel complex	voltage-gated sodium channel activity			skin(6)|ovary(1)|haematopoietic_and_lymphoid_tissue(1)|pancreas(1)	9				Kidney(284;0.00202)|KIRC - Kidney renal clear cell carcinoma(284;0.00226)	Cocaine(DB00907)	GCCAGAAATCCCCCATGTGCC	0.493													10	32					0	0	0.008291	0	0
VIPR1	7433	broad.mit.edu	37	3	42573337	42573337	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:42573337G>A	uc003clf.2	+	9	1018	c.894G>A	c.(892-894)AAG>AAA	p.K298K	VIPR1_uc011azl.1_Silent_p.K250K|VIPR1_uc011azm.1_Silent_p.K88K|VIPR1_uc011azn.1_Silent_p.K271K|VIPR1_uc003clg.2_5'UTR	NM_004624	NP_004615	P32241	VIPR1_HUMAN	vasoactive intestinal peptide receptor 1	298	Helical; Name=5; (Potential).				digestion|G-protein signaling, coupled to cyclic nucleotide second messenger|immune response|muscle contraction|positive regulation of cell proliferation|synaptic transmission	integral to plasma membrane	vasoactive intestinal polypeptide receptor activity			skin(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.241)		GGATCATAAAGGGCCCCATCC	0.363													14	34					0	0	0.002450	0	0
CDCP1	64866	broad.mit.edu	37	3	45134810	45134810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:45134810G>A	uc003com.2	-	6	1721	c.1586C>T	c.(1585-1587)TCC>TTC	p.S529F		NM_022842	NP_073753	Q9H5V8	CDCP1_HUMAN	CUB domain-containing protein 1 isoform 1	529	CUB.|Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(193;0.00928)|KIRC - Kidney renal clear cell carcinoma(197;0.0519)|Kidney(197;0.0651)		ACCCTGCCTGGAGGCCTCTTG	0.522													15	40					0	0	0.006122	0	0
LIMD1	8994	broad.mit.edu	37	3	45636773	45636773	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:45636773C>T	uc003coq.2	+	1	451	c.402C>T	c.(400-402)TCC>TCT	p.S134S		NM_014240	NP_055055	Q9UGP4	LIMD1_HUMAN	LIM domains containing 1	134	Mediates nuclear export.				cytoplasmic mRNA processing body assembly|gene silencing by miRNA|multicellular organismal development|negative regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	cytoplasmic mRNA processing body|nucleus|RNA-induced silencing complex	protein binding|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.011)|KIRC - Kidney renal clear cell carcinoma(197;0.0264)|Kidney(197;0.0315)		AGCAGAGATCCAGGCCATACC	0.657													8	55					0	0	0.004482	0	0
CCR5	1234	broad.mit.edu	37	3	46415077	46415077	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:46415077G>A	uc003cpo.3	+	3	806	c.684G>A	c.(682-684)AAG>AAA	p.K228K	CCR5_uc010hjd.2_Silent_p.K228K	NM_001100168	NP_001093638	P51681	CCR5_HUMAN	chemokine (C-C motif) receptor 5	228	Cytoplasmic (Potential).		Missing.		cell-cell signaling|cellular defense response|dendritic cell chemotaxis|elevation of cytosolic calcium ion concentration|entry into host cell|immune response|inflammatory response|initiation of viral infection	endosome|external side of plasma membrane|integral to plasma membrane	actin binding|C-C chemokine receptor activity|coreceptor activity|phosphatidylinositol phospholipase C activity			lung(4)|upper_aerodigestive_tract(1)|central_nervous_system(1)	6				BRCA - Breast invasive adenocarcinoma(193;0.00112)|KIRC - Kidney renal clear cell carcinoma(197;0.017)|Kidney(197;0.02)	Maraviroc(DB04835)	GAAATGAGAAGAAGAGGCACA	0.478													26	219					0	0	0.005443	0	0
DHX30	22907	broad.mit.edu	37	3	47859547	47859547	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:47859547C>T	uc003cru.2	+	4	490	c.64C>T	c.(64-66)CCC>TCC	p.P22S	DHX30_uc003crs.2_5'UTR|DHX30_uc003crt.2_5'UTR	NM_138615	NP_619520	Q7L2E3	DHX30_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 30	22						mitochondrial nucleoid	ATP binding|ATP-dependent helicase activity|protein binding|RNA binding			ovary(2)|skin(2)	4				BRCA - Breast invasive adenocarcinoma(193;0.000696)|KIRC - Kidney renal clear cell carcinoma(197;0.00609)|Kidney(197;0.007)		gtgcaaacttcccccaccccg	0.169													7	110					0	0	0.004482	0	0
ARIH2	10425	broad.mit.edu	37	3	48965197	48965197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:48965197C>T	uc003cvb.2	+	3	518	c.206C>T	c.(205-207)TCT>TTT	p.S69F	ARIH2_uc003cvc.2_Missense_Mutation_p.S69F|ARIH2_uc003cvf.2_5'UTR|ARIH2_uc010hkl.2_Missense_Mutation_p.S69F|ARIH2_uc003cvd.1_Missense_Mutation_p.S69F|ARIH2_uc003cve.1_Missense_Mutation_p.S69F	NM_006321	NP_006312	O95376	ARI2_HUMAN	ariadne homolog 2	69	Asp/Glu-rich (acidic).				developmental cell growth|hemopoietic stem cell proliferation|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	nucleic acid binding|protein binding|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;9.42e-05)|Kidney(197;0.00258)|KIRC - Kidney renal clear cell carcinoma(197;0.00269)		TACAAGGAATCTGAGGGTGCC	0.512													11	44					0	0	0.013537	0	0
BSN	8927	broad.mit.edu	37	3	49689107	49689107	+	Silent	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:49689107A>G	uc003cxe.3	+	5	2232	c.2118A>G	c.(2116-2118)GAA>GAG	p.E706E		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	706					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGGAGGTGGAACAGCTGGACA	0.632													12	63					0	0	0.013537	0	0
BSN	8927	broad.mit.edu	37	3	49695059	49695059	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:49695059C>T	uc003cxe.3	+	5	8184	c.8070C>T	c.(8068-8070)ATC>ATT	p.I2690I		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	2690					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		CCATCCACATCACAGCTGCCA	0.632													9	43					0	0	0.004482	0	0
RBM6	10180	broad.mit.edu	37	3	50005945	50005945	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:50005945C>T	uc003cyc.2	+	3	1220	c.1087C>T	c.(1087-1089)CCA>TCA	p.P363S	RBM6_uc011bdh.1_RNA|RBM6_uc010hlc.1_Intron|RBM6_uc003cyd.2_Intron|RBM6_uc003cye.2_Intron|RBM6_uc011bdi.1_Intron|RBM6_uc010hld.1_Intron|RBM6_uc010hle.1_Intron|RBM6_uc010hlf.1_Intron	NM_005777	NP_005768	P78332	RBM6_HUMAN	RNA binding motif protein 6	363					RNA processing	nucleus	DNA binding|nucleotide binding|RNA binding|zinc ion binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;6.81e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0084)|Kidney(197;0.00977)		CAGCCAAAGTCCAGTTCAAGA	0.458													4	42					0	0	0.009096	0	0
RRP9	9136	broad.mit.edu	37	3	51969657	51969657	+	Missense_Mutation	SNP	G	A	A	rs140029162	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:51969657G>A	uc003dbw.1	-	9	826	c.787C>T	c.(787-789)CGC>TGC	p.R263C		NM_004704	NP_004695	O43818	U3IP2_HUMAN	RNA, U3 small nucleolar interacting protein 2	263	WD 3.				rRNA processing	nucleolus|small nuclear ribonucleoprotein complex|small nucleolar ribonucleoprotein complex	RNA binding			breast(2)|ovary(1)	3				BRCA - Breast invasive adenocarcinoma(193;8.04e-05)|Kidney(197;0.000553)|KIRC - Kidney renal clear cell carcinoma(197;0.000724)		TTCACGGAGCGATCGTGGGAT	0.602													13	32					0	0	0.002450	0	0
CACNA2D3	55799	broad.mit.edu	37	3	54604085	54604085	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:54604085C>A	uc003dhf.2	+	8	890	c.842C>A	c.(841-843)TCC>TAC	p.S281Y	CACNA2D3_uc011beu.1_RNA|CACNA2D3_uc003dhg.1_Missense_Mutation_p.S187Y|CACNA2D3_uc003dhh.1_RNA|CACNA2D3_uc010hmv.1_Missense_Mutation_p.S15Y	NM_018398	NP_060868	Q8IZS8	CA2D3_HUMAN	calcium channel, voltage-dependent, alpha	281	Extracellular (Potential).|VWFA.					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			large_intestine(3)|ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	7				KIRC - Kidney renal clear cell carcinoma(284;0.00287)|Kidney(284;0.00327)		ACAGTCTCATCCATTTTGGAT	0.453													19	143					1.01871e-10	1.09911e-10	0.008871	1	0
HESX1	8820	broad.mit.edu	37	3	57233859	57233859	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:57233859C>T	uc003din.3	-	1	422	c.88G>A	c.(88-90)GAC>AAC	p.D30N		NM_003865	NP_003856	Q9UBX0	HESX1_HUMAN	HESX homeobox 1	30						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(284;0.0109)|Kidney(284;0.0126)		TTCTTCTGGTCCAGTCCTAAG	0.488													15	111					0	0	0.004007	0	0
SLMAP	7871	broad.mit.edu	37	3	57893673	57893673	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:57893673G>A	uc003dje.1	+	16	1718	c.1513G>A	c.(1513-1515)GAA>AAA	p.E505K	SLMAP_uc003djd.1_Missense_Mutation_p.E488K|SLMAP_uc003djf.1_Missense_Mutation_p.E467K|SLMAP_uc003djg.1_Missense_Mutation_p.E99K|SLMAP_uc011bez.1_Intron|SLMAP_uc011bfa.1_Missense_Mutation_p.E39K|SLMAP_uc003djh.2_Intron|SLMAP_uc003dji.1_Missense_Mutation_p.E39K|SLMAP_uc011bfb.1_Missense_Mutation_p.E39K|SLMAP_uc011bfc.1_Intron	NM_007159	NP_009090	Q14BN4	SLMAP_HUMAN	sarcolemma associated protein	505	Cytoplasmic (Potential).|Potential.				muscle contraction|protein folding	integral to plasma membrane|microtubule organizing center|prefoldin complex|sarcolemma|smooth endoplasmic reticulum	unfolded protein binding				0				BRCA - Breast invasive adenocarcinoma(55;0.000271)|KIRC - Kidney renal clear cell carcinoma(284;0.0602)|Kidney(284;0.0754)|OV - Ovarian serous cystadenocarcinoma(275;0.182)		TCTTCGAAAGGAATTGATCGA	0.378													13	16					0	0	0.002450	0	0
FLNB	2317	broad.mit.edu	37	3	58154354	58154354	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:58154354C>T	uc003djj.2	+	44	7551	c.7386C>T	c.(7384-7386)ATC>ATT	p.I2462I	FLNB_uc010hne.2_Silent_p.I2493I|FLNB_uc003djk.2_Silent_p.I2451I|FLNB_uc010hnf.2_Silent_p.I2438I|FLNB_uc003djl.2_Silent_p.I2282I|FLNB_uc003djm.2_Silent_p.I2269I|uc003djn.2_Intron	NM_001457	NP_001448	O75369	FLNB_HUMAN	filamin B isoform 2	2462	Filamin 23.|Interaction with INPPL1.				actin cytoskeleton organization|cell differentiation|cytoskeletal anchoring at plasma membrane|signal transduction	cell cortex|integral to membrane|nucleus|sarcomere	actin binding			breast(8)|ovary(5)|lung(3)|skin(2)|central_nervous_system(1)	19				BRCA - Breast invasive adenocarcinoma(55;0.000335)|KIRC - Kidney renal clear cell carcinoma(284;0.0726)|Kidney(284;0.0898)		CCAACCACATCGTGGGCAGTC	0.527													6	47					0	0	0.001984	0	0
FHIT	2272	broad.mit.edu	37	3	59737982	59737982	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:59737982T>G	uc003dkx.3	-	9	785	c.414A>C	c.(412-414)GAA>GAC	p.E138D	FHIT_uc003dky.2_Missense_Mutation_p.E138D|FHIT_uc010hnn.1_Missense_Mutation_p.E138D	NM_002012	NP_002003	P49789	FHIT_HUMAN	fragile histidine triad gene	138					nucleotide metabolic process		bis(5'-adenosyl)-triphosphatase activity|protein binding				0		all_cancers(2;2.37e-314)|all_epithelial(2;5.17e-286)|Colorectal(2;1.24e-68)|all_lung(2;1.31e-45)|Lung NSC(2;1.79e-44)|all_hematologic(2;1.59e-23)|Renal(2;1.03e-13)|Breast(2;1.06e-10)|Esophageal squamous(2;6.31e-09)|Melanoma(2;1.83e-07)|Acute lymphoblastic leukemia(2;5.46e-05)|all_neural(2;0.00118)|Medulloblastoma(2;0.00263)|Hepatocellular(2;0.0245)|Ovarian(2;0.0408)		UCEC - Uterine corpus endometrioid carcinoma (45;0.0887)|Epithelial(1;9.28e-70)|all cancers(1;3.07e-60)|Colorectal(1;2.33e-53)|STAD - Stomach adenocarcinoma(1;7.22e-48)|COAD - Colon adenocarcinoma(3;1.05e-44)|READ - Rectum adenocarcinoma(3;2.41e-08)|KIRC - Kidney renal clear cell carcinoma(10;0.000109)|Kidney(10;0.000125)|Lung(1;0.000161)|LUSC - Lung squamous cell carcinoma(1;0.000742)|OV - Ovarian serous cystadenocarcinoma(275;0.00372)|BRCA - Breast invasive adenocarcinoma(55;0.00448)		GAGCTGCGGCTTCTGCTGCCA	0.512			T	HMGA2	pleomorphic salivary gland adenoma				Renal_Cell_Cancer_associated_with_constitutional_translocation_of_chromosome_3				11	35					0	0	0.013537	0	0
PRICKLE2	166336	broad.mit.edu	37	3	64133290	64133290	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:64133290G>A	uc003dmf.2	-	7	1462	c.876C>T	c.(874-876)CTC>CTT	p.L292L		NM_198859	NP_942559	Q7Z3G6	PRIC2_HUMAN	prickle-like 2	292	LIM zinc-binding 3.					cytoplasm|nuclear membrane	zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(201;0.136)		BRCA - Breast invasive adenocarcinoma(55;0.000971)|KIRC - Kidney renal clear cell carcinoma(15;0.00443)|Kidney(15;0.00497)		GCCGCCCCAGGAGGGATTTCT	0.542													24	57					0	0	0.004656	0	0
MAGI1	9223	broad.mit.edu	37	3	65365122	65365122	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:65365122A>T	uc003dmn.2	-	17	3335	c.2809T>A	c.(2809-2811)TCG>ACG	p.S937T	MAGI1_uc003dmm.2_Missense_Mutation_p.S965T|MAGI1_uc003dmo.2_Missense_Mutation_p.S965T|MAGI1_uc003dmp.2_Missense_Mutation_p.S937T|MAGI1_uc003dmq.1_RNA|MAGI1_uc010hnx.1_Missense_Mutation_p.S248T	NM_001033057	NP_001028229	Q96QZ7	MAGI1_HUMAN	membrane associated guanylate kinase, WW and PDZ	965					cell adhesion|cell surface receptor linked signaling pathway|protein complex assembly	tight junction	ATP binding|protein C-terminus binding			lung(2)|skin(1)|breast(1)|kidney(1)|pancreas(1)	6		Lung NSC(201;0.0016)		BRCA - Breast invasive adenocarcinoma(55;0.00138)|KIRC - Kidney renal clear cell carcinoma(15;0.0988)|Kidney(15;0.133)		GTGTTCAGCGAGTTCTGGCTG	0.468													10	40					0	0	0.006214	0	0
ROBO2	6092	broad.mit.edu	37	3	77656953	77656953	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:77656953G>A	uc003dpy.3	+	21	3784	c.3141G>A	c.(3139-3141)GGG>GGA	p.G1047G	ROBO2_uc003dpz.2_Silent_p.G1051G|ROBO2_uc011bgj.1_RNA|ROBO2_uc011bgk.1_Silent_p.G1051G|ROBO2_uc003dqa.2_Silent_p.G174G	NM_002942	NP_002933	Q9HCK4	ROBO2_HUMAN	roundabout, axon guidance receptor, homolog 2	1047	Cytoplasmic (Potential).				apoptosis involved in luteolysis|axon midline choice point recognition|cellular response to hormone stimulus|homophilic cell adhesion|metanephros development|negative regulation of negative chemotaxis|negative regulation of synaptogenesis|olfactory bulb interneuron development|positive regulation of axonogenesis|retinal ganglion cell axon guidance|ureteric bud development	axolemma|cell surface|integral to membrane	axon guidance receptor activity|identical protein binding			lung(5)|skin(3)|ovary(1)|large_intestine(1)|liver(1)	11				Epithelial(33;0.00199)|LUSC - Lung squamous cell carcinoma(21;0.008)|BRCA - Breast invasive adenocarcinoma(55;0.00884)|Lung(72;0.0183)|KIRC - Kidney renal clear cell carcinoma(39;0.0832)|Kidney(39;0.103)		TTTCAGGTGGGAAAGGTGGAA	0.393													4	33					0	0	0.000602	0	0
OR5H15	403274	broad.mit.edu	37	3	97888470	97888470	+	Silent	SNP	T	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:97888470T>A	uc011bgu.1	+	1	927	c.927T>A	c.(925-927)GTT>GTA	p.V309V		NM_001005515	NP_001005515	A6NDH6	O5H15_HUMAN	olfactory receptor, family 5, subfamily H,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						AAAGAAATGTTAAGGTTTCAT	0.289													14	20					0	0	0.004007	0	0
ABI3BP	25890	broad.mit.edu	37	3	100595388	100595388	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:100595388C>T	uc003dun.2	-	7	819	c.734G>A	c.(733-735)AGG>AAG	p.R245K	ABI3BP_uc003duo.2_Missense_Mutation_p.R238K|ABI3BP_uc003dup.3_Missense_Mutation_p.R238K	NM_015429	NP_056244	Q7Z7G0	TARSH_HUMAN	ABI gene family, member 3 (NESH) binding protein	245						extracellular space				ovary(2)|large_intestine(1)|haematopoietic_and_lymphoid_tissue(1)	4						GATTAGTTTCCTTGGGACATA	0.363													7	51					0	0	0.003080	0	0
ZPLD1	131368	broad.mit.edu	37	3	102187820	102187820	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:102187820C>T	uc003dvs.1	+	15	1656	c.774C>T	c.(772-774)GAC>GAT	p.D258D	ZPLD1_uc003dvt.1_Silent_p.D274D|ZPLD1_uc011bhg.1_Silent_p.D258D	NM_175056	NP_778226	Q8TCW7	ZPLD1_HUMAN	zona pellucida-like domain containing 1	258	ZP.|Extracellular (Potential).					integral to membrane				ovary(2)|skin(2)|central_nervous_system(1)	5						GTGACAAGGACCCTCAGACCA	0.438													8	23					0	0	0.004482	0	0
CD200R1L	344807	broad.mit.edu	37	3	112548169	112548169	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:112548169C>T	uc003dzi.1	-	2	335	c.109G>A	c.(109-111)GAA>AAA	p.E37K	CD200R1L_uc011bhw.1_Missense_Mutation_p.E16K|CD200R1L_uc010hqf.1_Missense_Mutation_p.E16K	NM_001008784	NP_001008784	Q6Q8B3	MO2R2_HUMAN	CD200 cell surface glycoprotein receptor 2	37	Extracellular (Potential).					integral to membrane	receptor activity			ovary(1)	1						ATATTACCTTCTGCAAAAATT	0.423													6	20					0	0	0.001168	0	0
ZBTB20	26137	broad.mit.edu	37	3	114070395	114070395	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:114070395G>A	uc003ebi.2	-	4	710	c.530C>T	c.(529-531)GCC>GTC	p.A177V	ZBTB20_uc003ebj.2_Missense_Mutation_p.A104V|ZBTB20_uc010hqp.2_Missense_Mutation_p.A104V|ZBTB20_uc003ebk.2_Missense_Mutation_p.A104V|ZBTB20_uc003ebl.2_Missense_Mutation_p.A104V|ZBTB20_uc003ebm.2_Missense_Mutation_p.A104V|ZBTB20_uc003ebn.2_Missense_Mutation_p.A104V|uc003ebo.1_5'Flank	NM_015642	NP_056457	Q9HC78	ZBT20_HUMAN	zinc finger and BTB domain containing 20 isoform	177					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(4)|skin(1)	5				LUSC - Lung squamous cell carcinoma(41;0.0581)|Lung(219;0.191)		CAGGATGCTGGCGGCCGTGAG	0.592													6	30					0	0	0.001168	0	0
HGD	3081	broad.mit.edu	37	3	120352073	120352073	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:120352073G>A	uc003edw.2	-	13	1479	c.1109C>T	c.(1108-1110)CCC>CTC	p.P370L	HGD_uc003edv.2_Missense_Mutation_p.P229L	NM_000187	NP_000178	Q93099	HGD_HUMAN	homogentisate 1,2-dioxygenase	370					L-phenylalanine catabolic process|tyrosine catabolic process	cytosol	homogentisate 1,2-dioxygenase activity|metal ion binding				0				GBM - Glioblastoma multiforme(114;0.158)		AGGTCCATGGGGGGTCATTGT	0.542													14	75					0	0	0.002450	0	0
MYLK	4638	broad.mit.edu	37	3	123428636	123428636	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:123428636C>T	uc003ego.2	-	14	2191	c.1909G>A	c.(1909-1911)GGA>AGA	p.G637R	MYLK_uc011bjw.1_Missense_Mutation_p.G637R|MYLK_uc003egp.2_Missense_Mutation_p.G568R|MYLK_uc003egq.2_Missense_Mutation_p.G637R|MYLK_uc003egr.2_Missense_Mutation_p.G568R|MYLK_uc003egs.2_Missense_Mutation_p.G461R	NM_053025	NP_444253	Q15746	MYLK_HUMAN	myosin light chain kinase isoform 1	637	Ig-like C2-type 5.				aorta smooth muscle tissue morphogenesis|muscle contraction	cytosol	actin binding|ATP binding|calmodulin binding|metal ion binding|myosin light chain kinase activity			ovary(6)|skin(2)|stomach(1)	9		Lung NSC(201;0.0496)		GBM - Glioblastoma multiforme(114;0.0736)		ACCTGGCTTCCATCCATGACT	0.517													78	215					0	0	0.014410	0	0
HEG1	57493	broad.mit.edu	37	3	124739810	124739810	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:124739810G>A	uc003ehs.3	-	4	1146	c.1078C>T	c.(1078-1080)CCC>TCC	p.P360S	HEG1_uc011bke.1_Missense_Mutation_p.P360S	NM_020733	NP_065784	Q9ULI3	HEG1_HUMAN	HEG homolog 1 precursor	360	Extracellular (Potential).					extracellular region|integral to membrane	calcium ion binding			ovary(2)	2						GAGTCCTTGGGGAAGCCTTCT	0.522													5	32					0	0	0.001168	0	0
ALDH1L1	10840	broad.mit.edu	37	3	125856685	125856685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:125856685C>T	uc003eim.1	-	10	1385	c.1195G>A	c.(1195-1197)GAT>AAT	p.D399N	ALDH1L1_uc010hse.1_RNA|ALDH1L1_uc011bki.1_Missense_Mutation_p.D298N|ALDH1L1_uc003eio.2_Missense_Mutation_p.D101N|ALDH1L1_uc010hsf.1_Missense_Mutation_p.D425N	NM_012190	NP_036322	O75891	AL1L1_HUMAN	aldehyde dehydrogenase 1 family, member L1	399					10-formyltetrahydrofolate catabolic process|biosynthetic process		acyl carrier activity|cofactor binding|formyltetrahydrofolate dehydrogenase activity|hydroxymethyl-, formyl- and related transferase activity|methyltransferase activity			large_intestine(1)|ovary(1)|central_nervous_system(1)|skin(1)	4				GBM - Glioblastoma multiforme(114;0.0462)	Tetrahydrofolic acid(DB00116)	CCCTCCTCATCGTCCCCTCGC	0.557													11	32					0	0	0.008291	0	0
TMCC1	23023	broad.mit.edu	37	3	129547218	129547219	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:129547218_129547219CC>TT	uc003emz.3	-	4	504_505	c.3_4GG>AA	c.(1-6)ATGGAG>ATAAAG	p.1_2ME>IK	TMCC1_uc010htg.2_Intron	NM_001017395	NP_001017395	O94876	TMCC1_HUMAN	transmembrane and coiled-coil domain family 1	1_2						integral to membrane				skin(1)	1						CCCGAAGGCTCCATCAGTAGAC	0.411													21	40					0	0	0.004672	0	0
COL6A6	131873	broad.mit.edu	37	3	130300724	130300724	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:130300724G>A	uc010htl.2	+	8	3898	c.3867G>A	c.(3865-3867)CAG>CAA	p.Q1289Q	COL6A6_uc003eni.3_5'Flank	NM_001102608	NP_001096078	A6NMZ7	CO6A6_HUMAN	collagen type VI alpha 6 precursor	1289	VWFA 7.|Nonhelical region.				axon guidance|cell adhesion	collagen				ovary(6)|central_nervous_system(1)|pancreas(1)	8						ATACATTTCAGAATAAATCAG	0.328													26	135					0	0	0.007291	0	0
TOPBP1	11073	broad.mit.edu	37	3	133329853	133329853	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:133329853C>A	uc003eps.2	-	25	4300	c.4168G>T	c.(4168-4170)GTT>TTT	p.V1390F		NM_007027	NP_008958	Q92547	TOPB1_HUMAN	topoisomerase (DNA) II binding protein 1	1390	BRCT 8.				DNA repair|response to ionizing radiation	microtubule organizing center|PML body|spindle pole	DNA binding|protein C-terminus binding			ovary(2)|kidney(2)|skin(1)|lung(1)|pancreas(1)	7						AATACCTCAACAATGCCAGAT	0.328								Other_conserved_DNA_damage_response_genes					10	129					3.07112e-06	3.30277e-06	0.010729	1	0
HLTF	6596	broad.mit.edu	37	3	148792049	148792049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:148792049G>A	uc003ewq.1	-	4	700	c.482C>T	c.(481-483)TCA>TTA	p.S161L	HLTF_uc003ewr.1_Missense_Mutation_p.S161L|HLTF_uc003ews.1_Missense_Mutation_p.S161L|HLTF_uc010hve.1_Missense_Mutation_p.S161L	NM_139048	NP_620636	Q14527	HLTF_HUMAN	helicase-like transcription factor	161					chromatin modification|transcription, DNA-dependent	nucleus	ATP binding|DNA binding|helicase activity|ligase activity|zinc ion binding			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0473)|Lung(72;0.0607)			CAACTGATCTGAAACCGCTTT	0.353													13	35					0	0	0.013537	0	0
TM4SF1	4071	broad.mit.edu	37	3	149093295	149093295	+	Silent	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:149093295T>C	uc003exb.1	-	3	582	c.348A>G	c.(346-348)GCA>GCG	p.A116A	TM4SF1_uc003exc.1_Silent_p.A27A	NM_014220	NP_055035	P30408	T4S1_HUMAN	transmembrane 4 superfamily member 1	116	Extracellular (Probable).					integral to plasma membrane					0			LUSC - Lung squamous cell carcinoma(72;0.0378)|Lung(72;0.048)			GTGGTCCTTCTGCTAAGCCAA	0.478													15	33					0	0	0.003163	0	0
KCNAB1	7881	broad.mit.edu	37	3	156170718	156170718	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:156170718C>T	uc003far.2	+	3	414	c.350C>T	c.(349-351)TCA>TTA	p.S117L	KCNAB1_uc011bon.1_Missense_Mutation_p.S117L|KCNAB1_uc003fas.2_Missense_Mutation_p.S106L|KCNAB1_uc003fat.2_Missense_Mutation_p.S99L|KCNAB1_uc010hvt.1_Missense_Mutation_p.S99L	NM_172160	NP_751892	Q14722	KCAB1_HUMAN	potassium voltage-gated channel, shaker-related	117						cytoplasm|integral to membrane	oxidoreductase activity|potassium channel regulator activity|voltage-gated potassium channel activity			ovary(3)|skin(1)	4			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			GGTCAAATTTCAGATGAGGTA	0.363													16	113					0	0	0.008871	0	0
LEKR1	389170	broad.mit.edu	37	3	156745976	156745976	+	Missense_Mutation	SNP	C	T	T	rs137970825	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:156745976C>T	uc003fba.1	+	13	1876	c.541C>T	c.(541-543)CGG>TGG	p.R181W		NM_001004316	NP_001004316	Q6ZMV7	LEKR1_HUMAN	leucine, glutamate and lysine rich 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment											0			LUSC - Lung squamous cell carcinoma(72;0.0461)|Lung(72;0.0465)			ATCCCATATTCGGTACACTGA	0.338													4	29					0	0	0.000602	0	0
B3GALNT1	8706	broad.mit.edu	37	3	160803699	160803699	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:160803699G>A	uc003fdv.2	-	5	1263	c.844C>T	c.(844-846)CAT>TAT	p.H282Y	B3GALNT1_uc003fdw.2_Missense_Mutation_p.H282Y|B3GALNT1_uc003fdx.2_Missense_Mutation_p.H282Y|B3GALNT1_uc003fdy.2_Missense_Mutation_p.H282Y|B3GALNT1_uc003fdz.2_Missense_Mutation_p.H282Y|B3GALNT1_uc003fea.2_Missense_Mutation_p.H282Y|B3GALNT1_uc011bpa.1_Intron	NM_033169	NP_149359	O75752	B3GL1_HUMAN	UDP-Gal:betaGlcNAc beta	282	Lumenal (Potential).				protein glycosylation	Golgi membrane|integral to membrane	galactosylgalactosylglucosylceramide beta-D-acetylgalactosaminyltransferase activity|UDP-galactose:beta-N-acetylglucosamine beta-1,3-galactosyltransferase activity			skin(1)	1			LUSC - Lung squamous cell carcinoma(72;4.41e-05)|Lung(72;4.61e-05)			TCTGGAATATGAATGTTCACT	0.373													8	18					0	0	0.003080	0	0
ZBBX	79740	broad.mit.edu	37	3	167031881	167031881	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:167031881T>G	uc003fep.2	-	16	1621	c.1298A>C	c.(1297-1299)AAG>ACG	p.K433T	ZBBX_uc011bpc.1_Missense_Mutation_p.K433T|ZBBX_uc003feq.2_Missense_Mutation_p.K404T	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	433						intracellular	zinc ion binding			ovary(2)	2						AAAGCTATTCTTCTGACAATC	0.308													9	40					0	0	0.008291	0	0
WDR49	151790	broad.mit.edu	37	3	167196724	167196724	+	Missense_Mutation	SNP	C	T	T	rs76736291	by1000genomes	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:167196724C>T	uc003fev.1	-	15	2342	c.2036G>A	c.(2035-2037)CGA>CAA	p.R679Q	WDR49_uc003feu.1_Missense_Mutation_p.R504Q|WDR49_uc011bpd.1_Missense_Mutation_p.R644Q|WDR49_uc003few.1_3'UTR	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	679										large_intestine(1)|ovary(1)|skin(1)	3						CTTGGCTTTTCGTTCATGATG	0.318													9	27					0	0	0.006214	0	0
MECOM	2122	broad.mit.edu	37	3	168810796	168810796	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:168810796G>A	uc003ffi.3	-	13	2819	c.2550C>T	c.(2548-2550)TTC>TTT	p.F850F	MECOM_uc010hwk.1_Silent_p.F864F|MECOM_uc003ffj.3_Silent_p.F915F|MECOM_uc011bpi.1_Silent_p.F842F|MECOM_uc003ffn.3_Silent_p.F850F|MECOM_uc003ffk.2_Silent_p.F841F|MECOM_uc003ffl.2_Silent_p.F1001F|MECOM_uc011bpj.1_Silent_p.F1038F|MECOM_uc011bpk.1_Silent_p.F840F	NM_005241	NP_005232	Q03112	EVI1_HUMAN	MDS1 and EVI1 complex locus isoform b	850					apoptosis|cell differentiation|hemopoietic stem cell proliferation|negative regulation of JNK cascade|negative regulation of programmed cell death|negative regulation of transcription, DNA-dependent|regulation of cell cycle	nuclear speck	DNA binding|protein binding|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(5)|skin(5)|upper_aerodigestive_tract(1)|central_nervous_system(1)|ovary(1)|pancreas(1)	14						TGTTCCCAATGAAATTTCGAA	0.433													15	50					0	0	0.003163	0	0
NCEH1	57552	broad.mit.edu	37	3	172353837	172353837	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:172353837G>A	uc011bpx.1	-	4	736	c.598C>T	c.(598-600)CAT>TAT	p.H200Y	NCEH1_uc003fig.2_Missense_Mutation_p.H192Y|NCEH1_uc011bpw.1_Missense_Mutation_p.H27Y|NCEH1_uc011bpy.1_Missense_Mutation_p.H27Y	NM_001146276	NP_001139748	Q6PIU2	NCEH1_HUMAN	arylacetamide deacetylase-like 1 isoform a	160	Lumenal (Potential).				lipid catabolic process	endoplasmic reticulum|integral to membrane|microsome	carboxylesterase activity				0						ACAACATCATGAATTTGCTCA	0.393													17	66					0	0	0.007413	0	0
KCNMB2	10242	broad.mit.edu	37	3	178546140	178546140	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:178546140G>A	uc003fjd.2	+	4	745	c.402G>A	c.(400-402)GAG>GAA	p.E134E	uc003fjb.1_Intron|uc003fjc.1_Intron|KCNMB2_uc003fje.2_Silent_p.E134E|KCNMB2_uc003fjf.2_Silent_p.E134E|KCNMB2_uc011bqa.1_Intron|KCNMB2_uc011bqb.1_Intron	NM_181361	NP_852006	Q9Y691	KCMB2_HUMAN	calcium-activated potassium channel beta 2	134	Extracellular (Potential).				detection of calcium ion|platelet activation|regulation of action potential in neuron|regulation of vasoconstriction	voltage-gated potassium channel complex	calcium-activated potassium channel activity|ion channel inhibitor activity|potassium channel regulator activity			ovary(1)	1	all_cancers(143;5.38e-18)|Ovarian(172;0.00769)|Breast(254;0.125)		OV - Ovarian serous cystadenocarcinoma(80;1.32e-27)|GBM - Glioblastoma multiforme(14;0.0321)|BRCA - Breast invasive adenocarcinoma(182;0.0841)			ACACAGAAGAGACAATAAAAA	0.502													5	16					0	0	0.001168	0	0
MASP1	5648	broad.mit.edu	37	3	186938832	186938832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:186938832C>T	uc003frh.1	-	15	2232	c.1900G>A	c.(1900-1902)GAG>AAG	p.E634K		NM_001879	NP_001870	P48740	MASP1_HUMAN	mannan-binding lectin serine protease 1 isoform	634	Peptidase S1.				complement activation, lectin pathway|negative regulation of complement activation|proteolysis	extracellular space	calcium ion binding|calcium-dependent protein binding|protein binding|protein homodimerization activity|serine-type endopeptidase activity			ovary(2)|breast(1)|liver(1)	4	all_cancers(143;5.33e-12)|Ovarian(172;0.0339)		OV - Ovarian serous cystadenocarcinoma(80;3.49e-18)	GBM - Glioblastoma multiforme(93;0.0366)		CCTTCCTTCTCCCCAGCACAG	0.567													7	17					0	0	0.003080	0	0
ATP13A5	344905	broad.mit.edu	37	3	193032768	193032768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:193032768C>T	uc011bsq.1	-	18	2151	c.2151G>A	c.(2149-2151)ATG>ATA	p.M717I		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	717					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TACCTGTAATCATCACAGTCC	0.423													19	154					0	0	0.007413	0	0
ATP13A5	344905	broad.mit.edu	37	3	193036884	193036884	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:193036884G>A	uc011bsq.1	-	17	1929	c.1929C>T	c.(1927-1929)TTC>TTT	p.F643F		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	643					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		GTTCCTGTGGGAAATTCTTGG	0.483													35	90					0	0	0.004878	0	0
MUC20	200958	broad.mit.edu	37	3	195453126	195453126	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr3:195453126C>T	uc010hzo.2	+	3	1265	c.1139C>T	c.(1138-1140)CCG>CTG	p.P380L	MUC20_uc010hzp.2_Missense_Mutation_p.P345L|MUC20_uc011bte.1_RNA	NM_152673	NP_689886	Q8N307	MUC20_HUMAN	mucin 20 isoform L	551	Involved in oligomerization.				protein homooligomerization	apical plasma membrane|basal plasma membrane|extracellular region|microvillus membrane					0	all_cancers(143;1.8e-08)|Ovarian(172;0.0634)	Lung NSC(153;0.191)	Epithelial(36;1e-21)|all cancers(36;9.02e-20)|OV - Ovarian serous cystadenocarcinoma(49;1.6e-18)|Lung(62;0.000104)|LUSC - Lung squamous cell carcinoma(58;0.000128)	GBM - Glioblastoma multiforme(46;1.66e-05)		GGAGCAGCTCCGGTCTCCATA	0.552													7	35					0	0	0.001984	0	0
TACC3	10460	broad.mit.edu	37	4	1729699	1729699	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:1729699C>T	uc003gdo.2	+	4	678	c.570C>T	c.(568-570)TCC>TCT	p.S190S	TACC3_uc010ibz.2_Silent_p.S190S|TACC3_uc003gdp.2_Intron	NM_006342	NP_006333	Q9Y6A5	TACC3_HUMAN	transforming, acidic coiled-coil containing	190						centrosome				ovary(1)|central_nervous_system(1)	2		Breast(71;0.212)|all_epithelial(65;0.241)	OV - Ovarian serous cystadenocarcinoma(23;0.00765)|Epithelial(3;0.0126)			GTTCCTATTCCTTAGACAGAA	0.547													9	41					0	0	0.010729	0	0
HTT	3064	broad.mit.edu	37	4	3134345	3134345	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:3134345C>T	uc011bvq.1	+	18	2444	c.2299C>T	c.(2299-2301)CGA>TGA	p.R767*		NM_002111	NP_002102	P42858	HD_HUMAN	huntingtin	765					establishment of mitotic spindle orientation|Golgi organization|retrograde vesicle-mediated transport, Golgi to ER|vesicle transport along microtubule	autophagic vacuole|axon|cytoplasmic vesicle membrane|cytosol|dendrite|endoplasmic reticulum|Golgi apparatus|late endosome|membrane fraction|nucleus|protein complex	beta-tubulin binding|dynactin binding|dynein intermediate chain binding|p53 binding|transcription factor binding			skin(2)|ovary(1)|lung(1)	4		all_epithelial(65;0.18)		UCEC - Uterine corpus endometrioid carcinoma (64;0.187)		CCCACAGGTTCGAGGAGCCAC	0.517													10	33					0	0	0.008291	0	0
C4orf50	389197	broad.mit.edu	37	4	5966754	5966754	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:5966754C>T	uc003git.1	-	6	666	c.576G>A	c.(574-576)CTG>CTA	p.L192L		NM_207405	NP_997288	Q6ZRC1	CD050_HUMAN	hypothetical protein LOC389197	192										pancreas(2)|breast(1)	3						TTCTCACCTTCAGAGAATCCA	0.373													5	49					0	0	0.000602	0	0
HTRA3	94031	broad.mit.edu	37	4	8304223	8304223	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:8304223G>A	uc003gla.2	+	7	1289	c.1085G>A	c.(1084-1086)CGG>CAG	p.R362Q		NM_053044	NP_444272	P83110	HTRA3_HUMAN	HtrA serine peptidase 3 precursor	362	PDZ.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity			ovary(1)	1						ATACGGATGCGGACGATCACA	0.388													6	32					0	0	0.001168	0	0
LDB2	9079	broad.mit.edu	37	4	16760876	16760876	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:16760876T>G	uc003goz.2	-	2	456	c.140A>C	c.(139-141)GAC>GCC	p.D47A	LDB2_uc003gpa.2_Missense_Mutation_p.D47A|LDB2_uc003gpb.2_Missense_Mutation_p.D47A|LDB2_uc011bxh.1_Missense_Mutation_p.D47A|LDB2_uc010iee.2_Missense_Mutation_p.D47A	NM_001290	NP_001281	O43679	LDB2_HUMAN	LIM domain binding 2 isoform a	47							LIM domain binding|transcription cofactor activity				0						CCAGAGGTTGTCACTATCCTG	0.408													6	25					0	0	0.001984	0	0
PPARGC1A	10891	broad.mit.edu	37	4	23825971	23825971	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:23825971G>A	uc003gqs.2	-	7	929	c.809C>T	c.(808-810)CCC>CTC	p.P270L	PPARGC1A_uc003gqt.2_RNA|PPARGC1A_uc011bxp.1_RNA|PPARGC1A_uc010ier.1_RNA	NM_013261	NP_037393	Q9UBK2	PRGC1_HUMAN	peroxisome proliferator-activated receptor	270					androgen receptor signaling pathway|brown fat cell differentiation|cellular glucose homeostasis|digestion|fatty acid oxidation|gluconeogenesis|mitochondrion organization|mRNA processing|neuron death|positive regulation of fatty acid oxidation|positive regulation of gluconeogenesis|positive regulation of histone acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|protein complex assembly|protein stabilization|response to muscle activity|response to starvation|RNA splicing|temperature homeostasis|transcription initiation from RNA polymerase II promoter	DNA-directed RNA polymerase II, core complex	androgen receptor binding|DNA binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|nucleotide binding|RNA binding|RNA polymerase II transcription cofactor activity|transcription factor binding			ovary(2)|lung(2)|kidney(2)|skin(2)	8		Breast(46;0.0503)				GGAACCCTTGGGGTCACTGGA	0.393													12	96					0	0	0.010729	0	0
DHX15	1665	broad.mit.edu	37	4	24543549	24543549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:24543549G>A	uc003gqx.2	-	8	1600	c.1432C>T	c.(1432-1434)CCT>TCT	p.P478S	DHX15_uc003gqw.2_5'Flank	NM_001358	NP_001349	O43143	DHX15_HUMAN	DEAH (Asp-Glu-Ala-His) box polypeptide 15	478	Helicase C-terminal.				mRNA processing	U12-type spliceosomal complex	ATP binding|ATP-dependent helicase activity|nucleic acid binding|RNA helicase activity			ovary(1)	1		Breast(46;0.0503)				CATTTTCCAGGTCTGGTACGT	0.428													12	36					0	0	0.001855	0	0
N4BP2	55728	broad.mit.edu	37	4	40108641	40108641	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:40108641C>T	uc003guy.3	+	5	1833	c.1495C>T	c.(1495-1497)CGT>TGT	p.R499C	N4BP2_uc010ifq.2_Missense_Mutation_p.R419C|N4BP2_uc010ifr.2_Missense_Mutation_p.R419C	NM_018177	NP_060647	Q86UW6	N4BP2_HUMAN	Nedd4 binding protein 2	499						cytoplasm	ATP binding|ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity|endonuclease activity|protein binding			lung(3)|breast(2)|kidney(2)|ovary(1)	8						GAACCAGAATCGTGGTAAGAA	0.294													9	36					0	0	0.004482	0	0
GABRG1	2565	broad.mit.edu	37	4	46099293	46099293	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:46099293G>A	uc003gxb.2	-	2	330	c.178C>T	c.(178-180)CAT>TAT	p.H60Y		NM_173536	NP_775807	Q8N1C3	GBRG1_HUMAN	gamma-aminobutyric acid A receptor, gamma 1	60	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway	cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity			ovary(2)	2				Lung(65;0.106)|LUSC - Lung squamous cell carcinoma(721;0.23)		TCTCCTTCATGAATTTTTGGG	0.368													25	112					0	0	0.004656	0	0
TEC	7006	broad.mit.edu	37	4	48143371	48143371	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:48143371C>T	uc003gxz.2	-	15	1626	c.1535_splice	c.e15+1	p.R512_splice		NM_003215	NP_003206	P42680	TEC_HUMAN	tec protein tyrosine kinase						intracellular protein kinase cascade	cytosol	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding			lung(4)|stomach(1)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)	9						CTTGGACATACCTGGCCATTC	0.363													5	14					0	0	0.001168	0	0
FRYL	285527	broad.mit.edu	37	4	48566105	48566105	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:48566105G>A	uc003gyh.1	-	31	4061	c.3456C>T	c.(3454-3456)GGC>GGT	p.G1152G	FRYL_uc003gyk.2_Silent_p.G1152G|FRYL_uc003gyi.1_Silent_p.G41G	NM_015030	NP_055845	O94915	FRYL_HUMAN	furry-like	1152					regulation of transcription, DNA-dependent|transcription, DNA-dependent		protein binding			skin(1)	1						CTGCTTCACAGCCCAGCTGGT	0.478													5	42					0	0	0.001168	0	0
LRRC66	339977	broad.mit.edu	37	4	52860739	52860739	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:52860739C>T	uc003gzi.2	-	4	2462	c.2449G>A	c.(2449-2451)GAG>AAG	p.E817K		NM_001024611	NP_001019782	Q68CR7	LRC66_HUMAN	leucine rich repeat containing 66	817						integral to membrane				ovary(1)|central_nervous_system(1)|skin(1)	3						CCCGGAAACTCATCCCCTAAG	0.473													7	42					0	0	0.004482	0	0
ARL9	132946	broad.mit.edu	37	4	57389936	57389936	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:57389936A>G	uc003hby.1	+	4	714	c.266A>G	c.(265-267)AAG>AGG	p.K89R		NM_206919	NP_996802	Q6T311	ARL9_HUMAN	ADP-ribosylation factor-like 9	153							GTP binding				0	Glioma(25;0.08)|all_neural(26;0.101)					AATGACAGGAAGATGTTCTTG	0.448													8	31					0	0	0.004482	0	0
CXCL10	3627	broad.mit.edu	37	4	76943918	76943918	+	Silent	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:76943918T>C	uc003hjl.3	-	2	184	c.114A>G	c.(112-114)CAA>CAG	p.Q38Q	ART3_uc003hji.2_Intron|ART3_uc003hjj.2_Intron|ART3_uc003hjk.2_Intron	NM_001565	NP_001556	P02778	CXL10_HUMAN	small inducible cytokine B10 precursor	38					blood circulation|cell surface receptor linked signaling pathway|cell-cell signaling|chemotaxis|inflammatory response|muscle organ development|positive regulation of cell proliferation	extracellular space	cAMP-dependent protein kinase regulator activity|chemokine activity				0			Lung(101;0.0809)|LUSC - Lung squamous cell carcinoma(112;0.0934)			GATTAACAGGTTGATTACTAA	0.398													14	44					0	0	0.002450	0	0
GK2	2712	broad.mit.edu	37	4	80327831	80327831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:80327831C>T	uc003hlu.2	-	1	1542	c.1524G>A	c.(1522-1524)ATG>ATA	p.M508I		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	508					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CCATTGACTTCATTACGGCTT	0.448													15	43					0	0	0.004007	0	0
HELQ	113510	broad.mit.edu	37	4	84367225	84367225	+	Silent	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:84367225A>C	uc003hom.2	-	5	1586	c.1407T>G	c.(1405-1407)GGT>GGG	p.G469G	HELQ_uc010ikb.2_Silent_p.G402G|HELQ_uc003hol.3_RNA|HELQ_uc010ikc.2_RNA	NM_133636	NP_598375	Q8TDG4	HELQ_HUMAN	DNA helicase HEL308	469	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|nucleic acid binding			ovary(1)|breast(1)|skin(1)	3						GGCTTCCTTCACCAATCATGT	0.318								Direct_reversal_of_damage|Other_identified_genes_with_known_or_suspected_DNA_repair_function					6	73					0	0	0.003080	0	0
MMRN1	22915	broad.mit.edu	37	4	90856667	90856667	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:90856667G>A	uc003hst.2	+	6	1907	c.1836G>A	c.(1834-1836)GAG>GAA	p.E612E	MMRN1_uc010iku.2_Intron|MMRN1_uc011cds.1_Silent_p.E354E	NM_007351	NP_031377	Q13201	MMRN1_HUMAN	multimerin 1	612	Potential.				cell adhesion|platelet activation|platelet degranulation	extracellular region|platelet alpha granule lumen				ovary(4)	4		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;6.96e-05)		ACACAGAAGAGAATTTACATG	0.338													19	38					0	0	0.007413	0	0
NHEDC1	150159	broad.mit.edu	37	4	103822377	103822377	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:103822377G>A	uc003hww.2	-	12	1567	c.1445C>T	c.(1444-1446)CCA>CTA	p.P482L	NHEDC1_uc003hwu.2_Intron|NHEDC1_uc010ilm.2_Intron|NHEDC1_uc003hwv.2_Intron|NHEDC1_uc011cev.1_Missense_Mutation_p.P255L	NM_139173	NP_631912	Q4ZJI4	NHDC1_HUMAN	Na+/H+ exchanger domain containing 1 isoform 1	482	Helical; (Potential).					integral to membrane	solute:hydrogen antiporter activity			ovary(1)|skin(1)	2		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;1.5e-08)		AGCTCCATTTGGAGCTGTGAT	0.443													53	214					0	0	0.014410	0	0
NHEDC2	133308	broad.mit.edu	37	4	103952958	103952958	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:103952958A>G	uc003hwx.3	-	10	2026	c.1154T>C	c.(1153-1155)GTT>GCT	p.V385A	NHEDC2_uc010iln.1_Missense_Mutation_p.V237A|NHEDC2_uc003hwy.2_Missense_Mutation_p.V385A|NHEDC2_uc011cew.1_Missense_Mutation_p.V328A|NHEDC2_uc011cex.1_Missense_Mutation_p.V328A	NM_178833	NP_849155	Q86UD5	NHDC2_HUMAN	Na+/H+ exchanger domain containing 2	385					sodium ion transport	integral to membrane|mitochondrial membrane	solute:hydrogen antiporter activity				0				OV - Ovarian serous cystadenocarcinoma(123;2.3e-08)		TATCTTTTCAACCTCTGCCTA	0.343													6	16					0	0	0.001168	0	0
CFI	3426	broad.mit.edu	37	4	110667386	110667386	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:110667386C>T	uc003hzr.3	-	11	1629	c.1421G>A	c.(1420-1422)CGA>CAA	p.R474Q	CFI_uc003hzq.2_Missense_Mutation_p.R271Q|CFI_uc011cft.1_Missense_Mutation_p.R482Q|CFI_uc003hzs.3_Missense_Mutation_p.R467Q	NM_000204	NP_000195	P05156	CFAI_HUMAN	complement factor I preproprotein	474	Peptidase S1.				complement activation, classical pathway|innate immune response|proteolysis	extracellular space|membrane	scavenger receptor activity|serine-type endopeptidase activity				0		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.000331)		ACCTTTTTCTCGTCCCCAGCC	0.418													12	24					0	0	0.010729	0	0
ENPEP	2028	broad.mit.edu	37	4	111431408	111431408	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:111431408G>A	uc003iab.3	+	6	1544	c.1202G>A	c.(1201-1203)GGA>GAA	p.G401E		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	401	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	CAGTGGTTTGGAAATATTGTG	0.378													13	31					0	0	0.002450	0	0
NDST4	64579	broad.mit.edu	37	4	115769495	115769495	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:115769495C>T	uc003ibu.2	-	9	2496	c.1817_splice	c.e9-1	p.G606_splice	NDST4_uc010imw.2_Splice_Site	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase							Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GCAGTTGTTCCTGTTACAAAA	0.284													15	52					0	0	0.003163	0	0
NDST3	9348	broad.mit.edu	37	4	118975722	118975722	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:118975722C>T	uc003ibx.2	+	2	1060	c.657C>T	c.(655-657)GAC>GAT	p.D219D	NDST3_uc011cgf.1_Silent_p.D219D|NDST3_uc003ibw.2_Silent_p.D219D	NM_004784	NP_004775	O95803	NDST3_HUMAN	N-deacetylase/N-sulfotransferase (heparan	219	Lumenal (Potential).|Heparan sulfate N-deacetylase 3.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			large_intestine(1)	1						CTGGAACTGACTGGACAGTTT	0.373													5	101					0	0	0.001984	0	0
METTL14	57721	broad.mit.edu	37	4	119631359	119631359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:119631359C>T	uc003icf.2	+	11	1389	c.1273C>T	c.(1273-1275)CGT>TGT	p.R425C	METTL14_uc003icg.2_Missense_Mutation_p.R387C	NM_020961	NP_066012	Q9HCE5	MTL14_HUMAN	methyltransferase like 14	425	Gly-rich.					nucleus	mRNA (2'-O-methyladenosine-N6-)-methyltransferase activity				0						TTCTGCTGGCCGTGGACGAGA	0.522													16	23					0	0	0.003163	0	0
PRDM5	11107	broad.mit.edu	37	4	121828664	121828664	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:121828664A>C	uc003idn.2	-	2	392	c.142T>G	c.(142-144)TTG>GTG	p.L48V	PRDM5_uc003ido.2_Missense_Mutation_p.L48V|PRDM5_uc010ine.2_Missense_Mutation_p.L48V|PRDM5_uc010inf.2_Missense_Mutation_p.L48V|PRDM5_uc003idp.1_Missense_Mutation_p.L48V	NM_018699	NP_061169	Q9NQX1	PRDM5_HUMAN	PR domain containing 5	48	SET.				histone deacetylation|histone H3-K9 methylation|mitotic cell cycle|negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	repressing transcription factor binding|sequence-specific DNA binding|transcription regulatory region DNA binding|zinc ion binding			central_nervous_system(1)|pancreas(1)	2						TTTTCATCCAAGTCTTCAGGC	0.328													3	74					0	0	0.004672	0	0
TBC1D9	23158	broad.mit.edu	37	4	141555210	141555210	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:141555210G>A	uc010ioj.2	-	16	2910	c.2638C>T	c.(2638-2640)CCT>TCT	p.P880S		NM_015130	NP_055945	Q6ZT07	TBCD9_HUMAN	TBC1 domain family, member 9 (with GRAM domain)	880						intracellular	calcium ion binding|Rab GTPase activator activity			ovary(1)	1	all_hematologic(180;0.162)	Medulloblastoma(177;0.00498)				CATGCCCAAGGAAAGAGAAGA	0.512													4	13					0	0	0.009096	0	0
DCHS2	54798	broad.mit.edu	37	4	155155827	155155827	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:155155827G>A	uc003inw.2	-	25	8612	c.8612C>T	c.(8611-8613)CCC>CTC	p.P2871L		NM_017639	NP_060109	Q6V1P9	PCD23_HUMAN	dachsous 2 isoform 1	2871					homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(3)|pancreas(1)	4	all_hematologic(180;0.208)	Renal(120;0.0854)		LUSC - Lung squamous cell carcinoma(193;0.107)		AGAAAAATTGGGAGTCATGCC	0.517													15	103					0	0	0.003163	0	0
GRIA2	2891	broad.mit.edu	37	4	158224909	158224909	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:158224909G>A	uc003ipm.3	+	3	894	c.435G>A	c.(433-435)TGG>TGA	p.W145*	GRIA2_uc011cit.1_Nonsense_Mutation_p.W98*|GRIA2_uc003ipl.3_Nonsense_Mutation_p.W145*|GRIA2_uc003ipk.3_Nonsense_Mutation_p.W98*|GRIA2_uc010iqh.1_RNA	NM_001083619	NP_001077088	P42262	GRIA2_HUMAN	glutamate receptor, ionotropic, AMPA 2 isoform 2	145	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|endoplasmic reticulum membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity			central_nervous_system(3)|ovary(1)	4	all_hematologic(180;0.24)	Renal(120;0.0458)		COAD - Colon adenocarcinoma(41;0.0294)	L-Glutamic Acid(DB00142)	ACTATCAATGGGACAAGTTTG	0.443													12	64					0	0	0.010729	0	0
FAM198B	51313	broad.mit.edu	37	4	159092232	159092233	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:159092232_159092233CC>TT	uc003ipp.3	-	2	747_748	c.295_296GG>AA	c.(295-297)GGG>AAG	p.G99K	uc003ipu.1_5'Flank|FAM198B_uc003ipq.3_Missense_Mutation_p.G99K|FAM198B_uc003ipr.3_Missense_Mutation_p.G99K|FAM198B_uc003ips.2_Missense_Mutation_p.G99K|uc003ipt.1_RNA	NM_016613	NP_057697	Q6UWH4	F198B_HUMAN	hypothetical protein LOC51313 isoform 2	99	Extracellular (Potential).					Golgi membrane|integral to membrane					0						CAGAGTGGACCCATTGCCCTGG	0.624													12	68					0	0	0.004672	0	0
TLL1	7092	broad.mit.edu	37	4	166999147	166999147	+	Missense_Mutation	SNP	G	A	A	rs150952504		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:166999147G>A	uc003irh.1	+	18	3054	c.2407G>A	c.(2407-2409)GAA>AAA	p.E803K	TLL1_uc011cjn.1_Missense_Mutation_p.E826K|TLL1_uc011cjo.1_Missense_Mutation_p.E627K	NM_012464	NP_036596	O43897	TLL1_HUMAN	tolloid-like 1 precursor	803	CUB 4.				cell differentiation|proteolysis|skeletal system development	extracellular region	calcium ion binding|metalloendopeptidase activity|zinc ion binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7	all_hematologic(180;0.221)	Melanoma(52;0.0315)|Prostate(90;0.0405)		GBM - Glioblastoma multiforme(119;0.103)		ATGCACTTGGGAAATCAGCGC	0.488													5	44					0	0	0.000602	0	0
DDX60L	91351	broad.mit.edu	37	4	169341442	169341442	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:169341442T>G	uc003irq.3	-	18	2705	c.2484A>C	c.(2482-2484)AGA>AGC	p.R828S	DDX60L_uc003irr.1_Missense_Mutation_p.R828S|DDX60L_uc003irs.1_Missense_Mutation_p.R555S	NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	828	Helicase ATP-binding.						ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		GACAATAATCTCTTGTAAAAG	0.368													3	15					0	0	0.004672	0	0
FBXO8	26269	broad.mit.edu	37	4	175184102	175184102	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:175184102G>A	uc003itp.2	-	2	992	c.142C>T	c.(142-144)CAA>TAA	p.Q48*	FBXO8_uc003itq.2_Nonsense_Mutation_p.Q48*	NM_012180	NP_036312	Q9NRD0	FBX8_HUMAN	F-box only protein 8	48					regulation of ARF protein signal transduction|ubiquitin-dependent protein catabolic process	cytoplasm|ubiquitin ligase complex	ARF guanyl-nucleotide exchange factor activity			breast(2)	2		Prostate(90;0.00201)|Melanoma(52;0.012)|Renal(120;0.0183)|all_neural(102;0.0887)|all_hematologic(60;0.107)		all cancers(43;7.29e-18)|Epithelial(43;1.85e-15)|OV - Ovarian serous cystadenocarcinoma(60;5.62e-09)|GBM - Glioblastoma multiforme(59;0.00115)|STAD - Stomach adenocarcinoma(60;0.00299)|LUSC - Lung squamous cell carcinoma(193;0.1)		ATGCCTCCTTGGACTTGTTTA	0.438													15	74					0	0	0.004007	0	0
WDR17	116966	broad.mit.edu	37	4	177094490	177094490	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:177094490C>T	uc003iuj.2	+	27	3590	c.3434C>T	c.(3433-3435)ACT>ATT	p.T1145I	WDR17_uc003iuk.2_Missense_Mutation_p.T1121I|WDR17_uc003ium.3_Missense_Mutation_p.T1106I|WDR17_uc003iul.1_Intron|WDR17_uc003iun.2_Missense_Mutation_p.T356I	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	1145										ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		TATATTCGTACTGAAAAATTA	0.333													5	20					0	0	0.001168	0	0
KLKB1	3818	broad.mit.edu	37	4	187173248	187173248	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr4:187173248C>T	uc003iyy.2	+	11	1293	c.1222C>T	c.(1222-1224)CTG>TTG	p.L408L	KLKB1_uc011clc.1_Silent_p.L206L|KLKB1_uc011cld.1_Silent_p.L370L	NM_000892	NP_000883	P03952	KLKB1_HUMAN	plasma kallikrein B1 precursor	408	Peptidase S1.				blood coagulation, intrinsic pathway|Factor XII activation|fibrinolysis|plasminogen activation|positive regulation of fibrinolysis	cytoplasm|extracellular space|plasma membrane	serine-type endopeptidase activity			ovary(1)	1		all_cancers(14;1.55e-52)|all_epithelial(14;7.69e-39)|all_lung(41;1.34e-13)|Lung NSC(41;3.58e-13)|Melanoma(20;1.91e-06)|Colorectal(36;0.00664)|Hepatocellular(41;0.00886)|Renal(120;0.00988)|Prostate(90;0.00996)|all_hematologic(60;0.014)|all_neural(102;0.243)		OV - Ovarian serous cystadenocarcinoma(60;1.29e-10)|BRCA - Breast invasive adenocarcinoma(30;3.8e-05)|GBM - Glioblastoma multiforme(59;0.000131)|STAD - Stomach adenocarcinoma(60;0.000292)|LUSC - Lung squamous cell carcinoma(40;0.00241)|READ - Rectum adenocarcinoma(43;0.168)		GCAGGTGAGCCTGCAGGTGAA	0.537													6	62					0	0	0.001168	0	0
TPPP	11076	broad.mit.edu	37	5	677984	677985	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:677984_677985GG>AA	uc003jbg.3	-	1	909_910	c.191_192CC>TT	c.(190-192)GCC>GTT	p.A64V	TPPP_uc003jbh.3_Missense_Mutation_p.A64V	NM_007030	NP_008961	O94811	TPPP_HUMAN	tubulin polymerization promoting protein	64	Mediates interaction with LIMK1.				microtubule bundle formation|microtubule polymerization|positive regulation of protein polymerization	nucleus|perinuclear region of cytoplasm|soluble fraction	calcium ion binding|microtubule binding				0		Ovarian(839;0.0563)	Epithelial(17;0.000445)|all cancers(22;0.00176)|OV - Ovarian serous cystadenocarcinoma(19;0.00227)|Lung(60;0.0863)	GBM - Glioblastoma multiforme(108;0.0191)		CGGTGGCCCTGGCGTCCCCGTG	0.663													5	22					0	0	0.004672	0	0
DNAH5	1767	broad.mit.edu	37	5	13913929	13913929	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:13913929A>C	uc003jfd.2	-	11	1501	c.1459T>G	c.(1459-1461)TTT>GTT	p.F487V	DNAH5_uc003jfe.1_RNA	NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	487	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					AGGGTTGTAAAGATGTCTATT	0.358									Kartagener_syndrome				9	58					0	0	0.004482	0	0
C7	730	broad.mit.edu	37	5	40945392	40945392	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:40945392G>A	uc003jmh.2	+	7	774	c.660G>A	c.(658-660)CGG>CGA	p.R220R	C7_uc011cpn.1_Intron	NM_000587	NP_000578	P10643	CO7_HUMAN	complement component 7 precursor	220	MACPF.		R -> Q (in C7D).		complement activation, alternative pathway|complement activation, classical pathway|cytolysis	extracellular region|membrane attack complex					0		Ovarian(839;0.0112)				CATCTAGTCGGAAGCGCTCCT	0.313													9	15					0	0	0.006214	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41061746	41061746	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:41061746G>A	uc003jmj.3	-	6	1031	c.541C>T	c.(541-543)CGA>TGA	p.R181*		NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	181							binding			ovary(6)|central_nervous_system(2)	8						TCAGACAGTCGGTTGGCATCC	0.483													20	107					0	0	0.010504	0	0
GHR	2690	broad.mit.edu	37	5	42718878	42718878	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:42718878C>T	uc003jmt.2	+	10	1312	c.1269C>T	c.(1267-1269)CTC>CTT	p.L423L	GHR_uc011cpq.1_Silent_p.L236L	NM_000163	NP_000154	P10912	GHR_HUMAN	growth hormone receptor precursor	423	Cytoplasmic (Potential).				2-oxoglutarate metabolic process|activation of JAK2 kinase activity|activation of MAPK activity|allantoin metabolic process|citrate metabolic process|creatine metabolic process|creatinine metabolic process|endocytosis|fatty acid metabolic process|growth hormone receptor signaling pathway|insulin-like growth factor receptor signaling pathway|isoleucine metabolic process|JAK-STAT cascade|multicellular organismal metabolic process|oxaloacetate metabolic process|positive regulation of multicellular organism growth|positive regulation of tyrosine phosphorylation of Stat3 protein|positive regulation of tyrosine phosphorylation of Stat5 protein|receptor internalization|response to cycloheximide|response to estradiol stimulus|succinate metabolic process|taurine metabolic process|valine metabolic process	cell surface|extracellular space|growth hormone receptor complex|integral to plasma membrane	growth factor binding|peptide hormone binding|proline-rich region binding|protein homodimerization activity|protein kinase binding			lung(4)|kidney(1)|skin(1)	6		Myeloproliferative disorder(839;0.00878)			Pegvisomant(DB00082)|Somatropin recombinant(DB00052)	AAGCAGATCTCTTATGCCTTG	0.453													13	31					0	0	0.013537	0	0
PAIP1	10605	broad.mit.edu	37	5	43529889	43529889	+	Missense_Mutation	SNP	G	A	A	rs149920694		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:43529889G>A	uc003job.2	-	10	1592	c.1345C>T	c.(1345-1347)CCA>TCA	p.P449S	PAIP1_uc003joa.2_Missense_Mutation_p.P370S|PAIP1_uc010ivp.2_Intron|PAIP1_uc010ivo.2_RNA|PAIP1_uc003joc.2_Missense_Mutation_p.P337S	NM_006451	NP_006442	Q9H074	PAIP1_HUMAN	poly(A) binding protein interacting protein 1	449	PABPC1-interacting motif-1 (PAM1).				mRNA stabilization|nuclear-transcribed mRNA poly(A) tail shortening|translational initiation	cytosol	protein binding|RNA binding|translation activator activity			ovary(1)	1	Lung NSC(6;2.07e-05)					AAAACTTACGGATCACCAGCC	0.353													9	43					0	0	0.008291	0	0
ISL1	3670	broad.mit.edu	37	5	50687133	50687133	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:50687133C>T	uc003jor.2	+	5	1339	c.791C>T	c.(790-792)CCC>CTC	p.P264L		NM_002202	NP_002193	P61371	ISL1_HUMAN	islet-1	264	Gln-rich.				generation of precursor metabolites and energy|multicellular organismal development	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(2)|ovary(1)	3		Lung NSC(810;0.000845)|Breast(144;0.0411)				ACAGGAACTCCCATGGTGGCT	0.522													13	24					0	0	0.003163	0	0
ITGA1	3672	broad.mit.edu	37	5	52183650	52183650	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:52183650G>A	uc003jou.2	+	8	829	c.777G>A	c.(775-777)AAG>AAA	p.K259K	ITGA1_uc003jov.2_RNA	NM_181501	NP_852478	P56199	ITA1_HUMAN	integrin, alpha 1 precursor	259	Extracellular (Potential).|VWFA.				axon guidance|cell-matrix adhesion|integrin-mediated signaling pathway|muscle contraction	integrin complex	collagen binding|receptor activity			ovary(2)|lung(1)	3		Lung NSC(810;5.05e-05)|Breast(144;0.0851)				ACTTTAGAAAGGAGGCATTCA	0.408													7	40					0	0	0.001984	0	0
CMYA5	202333	broad.mit.edu	37	5	79031855	79031855	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:79031855G>A	uc003kgc.2	+	2	7339	c.7267G>A	c.(7267-7269)GAT>AAT	p.D2423N		NM_153610	NP_705838	Q8N3K9	CMYA5_HUMAN	cardiomyopathy associated 5	2423						perinuclear region of cytoplasm				ovary(6)|pancreas(2)|lung(1)	9		Lung NSC(167;0.00296)|all_lung(232;0.00327)|Ovarian(174;0.0262)		OV - Ovarian serous cystadenocarcinoma(54;9.85e-46)|Epithelial(54;3.38e-40)|all cancers(79;3.43e-35)		CAGTTTAATTGATTTCAGTGA	0.353													9	14					0	0	0.008291	0	0
VCAN	1462	broad.mit.edu	37	5	82815862	82815862	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:82815862C>T	uc003kii.3	+	7	2093	c.1737C>T	c.(1735-1737)GTC>GTT	p.V579V	VCAN_uc003kij.3_Intron|VCAN_uc010jau.2_Silent_p.V579V|VCAN_uc003kik.3_Intron	NM_004385	NP_004376	P13611	CSPG2_HUMAN	versican isoform 1 precursor	579	GAG-alpha (glucosaminoglycan attachment domain).				cell adhesion|cell recognition|glial cell migration	extracellular space|proteinaceous extracellular matrix	calcium ion binding|hyaluronic acid binding|sugar binding			ovary(7)|skin(6)|lung(2)|central_nervous_system(1)	16		Lung NSC(167;0.0216)|all_lung(232;0.0251)|Ovarian(174;0.142)		OV - Ovarian serous cystadenocarcinoma(54;2.47e-41)|Epithelial(54;2.51e-34)|all cancers(79;5.19e-29)		TTCCTGAAGTCATTACGGTGT	0.433													33	43					0	0	0.013726	0	0
MCTP1	79772	broad.mit.edu	37	5	94275830	94275830	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:94275830G>A	uc003kkx.2	-	5	1131	c.1131C>T	c.(1129-1131)CTC>CTT	p.L377L	MCTP1_uc003kkv.2_Silent_p.L156L|MCTP1_uc003kkw.2_Silent_p.L156L|MCTP1_uc003kkz.2_Silent_p.L38L	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	377					calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		GGATGACTGAGAGCAAAATGA	0.433													45	115					0	0	0.014410	0	0
PCSK1	5122	broad.mit.edu	37	5	95735866	95735866	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:95735866C>A	uc003kls.1	-	10	1427	c.1221G>T	c.(1219-1221)ATG>ATT	p.M407I	PCSK1_uc010jbi.1_Missense_Mutation_p.M97I	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	407	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	CCAGGTGCTGCATATCTCGCC	0.473													14	62					2.31682e-05	2.48622e-05	0.003163	1	0
ERAP2	64167	broad.mit.edu	37	5	96248423	96248423	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:96248423G>A	uc003kmq.2	+	16	3147	c.2437G>A	c.(2437-2439)GAA>AAA	p.E813K	uc003kmo.1_Intron|ERAP2_uc003kmt.2_Missense_Mutation_p.E813K|ERAP2_uc003kmr.2_RNA|ERAP2_uc003kms.2_Missense_Mutation_p.E762K|ERAP2_uc003kmu.2_RNA	NM_022350	NP_071745	Q6P179	ERAP2_HUMAN	endoplasmic reticulum aminopeptidase 2	813	Lumenal (Potential).				antigen processing and presentation of endogenous peptide antigen via MHC class I|proteolysis|regulation of blood pressure	endoplasmic reticulum lumen|endoplasmic reticulum membrane|integral to membrane	aminopeptidase activity|metallopeptidase activity|zinc ion binding				0		all_cancers(142;0.000311)|all_epithelial(76;1.54e-06)|all_lung(232;0.0131)|Lung NSC(167;0.0161)|Colorectal(57;0.0596)|Ovarian(225;0.105)		COAD - Colon adenocarcinoma(37;0.0703)		AGAGCAATATGAACTGTCAAT	0.343													17	28					0	0	0.004007	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834427	101834427	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:101834427G>A	uc003knn.2	-	1	294	c.122C>T	c.(121-123)TCC>TTC	p.S41F	SLCO6A1_uc003kno.2_Missense_Mutation_p.S41F|SLCO6A1_uc003knp.2_Missense_Mutation_p.S41F|SLCO6A1_uc003knq.2_Missense_Mutation_p.S41F	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	41	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GGGCTTCGAGGACTTCGGGGT	0.577													68	130					0	0	0.014410	0	0
PPIP5K2	23262	broad.mit.edu	37	5	102469317	102469317	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:102469317C>T	uc003kod.3	+	3	794	c.275C>T	c.(274-276)CCT>CTT	p.P92L	PPIP5K2_uc011cva.1_RNA|PPIP5K2_uc003koe.2_Missense_Mutation_p.P92L|PPIP5K2_uc010jbo.1_Intron	NM_015216	NP_056031	O43314	VIP2_HUMAN	Histidine acid phosphatase domain containing 1	92					inositol metabolic process	cytosol	acid phosphatase activity|ATP binding|diphosphoinositol-pentakisphosphate kinase activity|inositol 1,3,4,5,6-pentakisphosphate kinase activity|inositol hexakisphosphate 5-kinase activity			ovary(1)|skin(1)	2						GAAAACTGGCCTTTATGTGAT	0.308													21	32					0	0	0.003954	0	0
ADAMTS19	171019	broad.mit.edu	37	5	129019852	129019852	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:129019852G>A	uc003kvb.1	+	18	2686	c.2686G>A	c.(2686-2688)GAA>AAA	p.E896K	ADAMTS19_uc010jdh.1_RNA	NM_133638	NP_598377	Q8TE59	ATS19_HUMAN	ADAM metallopeptidase with thrombospondin type 1	896	Spacer.				proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(5)|breast(2)|lung(1)|skin(1)	9		all_cancers(142;0.0148)|Prostate(80;0.0494)|Breast(839;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)	OV - Ovarian serous cystadenocarcinoma(64;0.222)		TCTTCACTATGAATACACTAT	0.453													13	46					0	0	0.001855	0	0
FSTL4	23105	broad.mit.edu	37	5	132736636	132736636	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:132736636T>G	uc003kyn.1	-	4	421	c.203A>C	c.(202-204)AAG>ACG	p.K68T		NM_015082	NP_055897	Q6MZW2	FSTL4_HUMAN	follistatin-like 4 precursor	68						extracellular region	calcium ion binding			central_nervous_system(1)|skin(1)	2		all_cancers(142;0.244)	KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			GCTGCAGAACTTCTTCCCGCA	0.627													7	41					0	0	0.001984	0	0
CDKL3	51265	broad.mit.edu	37	5	133541810	133541810	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:133541810G>A	uc011cxm.1	-	10	1240	c.1153C>T	c.(1153-1155)CTG>TTG	p.L385L	CDKL3_uc011cxn.1_RNA|PPP2CA_uc003kze.2_Silent_p.L39L	NM_001113575	NP_001107047	Q8IVW4	CDKL3_HUMAN	cyclin-dependent kinase-like 3 isoform 1	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment						cytoplasm	ATP binding|cyclin-dependent protein kinase activity			breast(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0186)|Kidney(363;0.0365)			TCTTTTGTCAGGATTTCTTTA	0.363													13	30					0	0	0.001855	0	0
H2AFY	9555	broad.mit.edu	37	5	134696251	134696251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:134696251G>A	uc003lam.1	-	5	734	c.524C>T	c.(523-525)ACC>ATC	p.T175I	H2AFY_uc003lao.1_Missense_Mutation_p.T174I|H2AFY_uc003lan.1_Missense_Mutation_p.T175I|H2AFY_uc003lap.1_RNA|H2AFY_uc003laq.1_RNA|H2AFY_uc003lar.1_RNA|H2AFY_uc011cxz.1_Intron|H2AFY_uc003las.1_Missense_Mutation_p.T175I|H2AFY_uc003lat.1_Missense_Mutation_p.T174I	NM_138610	NP_613258	O75367	H2AY_HUMAN	H2A histone family, member Y isoform 3	175					chromatin modification|dosage compensation|nucleosome assembly	Barr body|nucleosome	DNA binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TGTGCCCTCGGTTGTGCTGTC	0.597													16	51					0	0	0.006122	0	0
TRPC7	57113	broad.mit.edu	37	5	135561779	135561779	+	Silent	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:135561779A>C	uc003lbn.1	-	8	2205	c.2202T>G	c.(2200-2202)TCT>TCG	p.S734S	TRPC7_uc010jef.1_Silent_p.S671S|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_Silent_p.S665S|TRPC7_uc010jei.1_Silent_p.S610S|TRPC7_uc010jej.1_Silent_p.S286S	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	735	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			TTTTGGCCTTAGATTTGCAGA	0.403													2	11					0	0	0.004672	0	0
TRPC7	57113	broad.mit.edu	37	5	135693067	135693067	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:135693067C>T	uc003lbn.1	-	1	9	c.6G>A	c.(4-6)AGG>AGA	p.R2R	TRPC7_uc010jef.1_5'UTR|TRPC7_uc010jeg.1_RNA|TRPC7_uc010jeh.1_5'UTR|TRPC7_uc010jei.1_5'UTR|TRPC7_uc010jej.1_5'UTR	NM_020389	NP_065122	Q9HCX4	TRPC7_HUMAN	transient receptor potential cation channel,	3	Cytoplasmic (Potential).				axon guidance|platelet activation	integral to membrane|plasma membrane	calcium channel activity|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AGGTGCTGTTCCTCAACCTAT	0.527													12	24					0	0	0.013537	0	0
SLC23A1	9963	broad.mit.edu	37	5	138713965	138713965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:138713965G>A	uc003leh.2	-	11	1352	c.1255C>T	c.(1255-1257)CTC>TTC	p.L419F	SLC23A1_uc003leg.2_Missense_Mutation_p.L423F	NM_005847	NP_005838	Q9UHI7	S23A1_HUMAN	solute carrier family 23 (nucleobase	419	Helical; (Potential).				brain development|nucleobase, nucleoside, nucleotide and nucleic acid metabolic process|response to toxin|transepithelial L-ascorbic acid transport|water-soluble vitamin metabolic process	apical plasma membrane|cytoplasm|integral to plasma membrane|intracellular organelle|membrane fraction	dehydroascorbic acid transporter activity|L-ascorbate:sodium symporter activity|nucleobase transmembrane transporter activity|protein binding|sodium-dependent L-ascorbate transmembrane transporter activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00325)		Vitamin C(DB00126)	GAGGAGAAGAGGGCCGTGAAC	0.682													3	14					0	0	0.004672	0	0
NRG2	9542	broad.mit.edu	37	5	139267057	139267057	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:139267057C>T	uc003lex.1	-	2	965	c.740G>A	c.(739-741)GGA>GAA	p.G247E	NRG2_uc003lev.1_Missense_Mutation_p.G247E|NRG2_uc003lew.1_Missense_Mutation_p.G247E|NRG2_uc003ley.1_Missense_Mutation_p.G247E	NM_004883	NP_004874	O14511	NRG2_HUMAN	neuregulin 2 isoform 1	247	Ig-like C2-type.|Extracellular (Potential).				embryo development	extracellular region|integral to membrane|plasma membrane	growth factor activity			pancreas(2)|breast(2)|ovary(1)|skin(1)	6			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			ACCCACCTGTCCCGTCTGGCT	0.587													13	23					0	0	0.001855	0	0
PCDHA6	56142	broad.mit.edu	37	5	140208960	140208960	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:140208960G>A	uc003lho.2	+	1	1311	c.1284G>A	c.(1282-1284)CGG>CGA	p.R428R	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Silent_p.R428R|PCDHA6_uc011dab.1_Silent_p.R428R	NM_018909	NP_061732	Q9UN73	PCDA6_HUMAN	protocadherin alpha 6 isoform 1 precursor	428	Cadherin 4.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	extracellular region|integral to plasma membrane	calcium ion binding|protein binding			haematopoietic_and_lymphoid_tissue(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAACCGCGCGGGACGGGGGCT	0.622													31	87					0	0	0.008361	0	0
PCDHA12	56137	broad.mit.edu	37	5	140255514	140255514	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:140255514C>T	uc003lic.2	+	1	584	c.457C>T	c.(457-459)CCT>TCT	p.P153S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc011daf.1_Missense_Mutation_p.P153S	NM_018903	NP_061726	Q9UN75	PCDAC_HUMAN	protocadherin alpha 12 isoform 1 precursor	153	Extracellular (Potential).|Cadherin 2.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			CTCTCATTTTCCTCTAGAGGG	0.438													21	38					0	0	0.010504	0	0
PCDHB17	54661	broad.mit.edu	37	5	140537184	140537185	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:140537184_140537185CC>TT	uc003lis.2	+	1	1605_1606	c.1605_1606CC>TT	c.(1603-1608)GACCGC>GATTGC	p.R536C		NR_001280				SubName: Full=Protocadherin-psi1;												0						GCGCCTCAGACCGCGGTTCTCC	0.653													18	41					0	0	0.004672	0	0
DIAPH1	1729	broad.mit.edu	37	5	140954566	140954566	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:140954566G>A	uc003llb.3	-	15	1750	c.1609C>T	c.(1609-1611)CTG>TTG	p.L537L	DIAPH1_uc003llc.3_Silent_p.L528L|DIAPH1_uc010jgc.1_5'Flank	NM_005219	NP_005210	O60610	DIAP1_HUMAN	diaphanous 1 isoform 1	537	Potential.				regulation of microtubule-based process|sensory perception of sound	cytoplasm|cytoskeleton|ruffle membrane	actin binding|receptor binding|Rho GTPase binding			skin(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TCTGCTTCCAGGTCCTGTTTC	0.488													25	43					0	0	0.003954	0	0
SH3RF2	153769	broad.mit.edu	37	5	145393464	145393464	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:145393464C>T	uc003lnt.2	+	5	1137	c.899C>T	c.(898-900)TCC>TTC	p.S300F	SH3RF2_uc011dbl.1_Missense_Mutation_p.S300F	NM_152550	NP_689763	Q8TEC5	SH3R2_HUMAN	SH3 domain containing ring finger 2	300							ligase activity|protein phosphatase 1 binding|zinc ion binding			ovary(1)|skin(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GGGCAGTTTTCCATCACAACA	0.577													25	91					0	0	0.003954	0	0
POU4F3	5459	broad.mit.edu	37	5	145719426	145719426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:145719426C>T	uc003loa.2	+	2	525	c.436C>T	c.(436-438)CCA>TCA	p.P146S		NM_002700	NP_002691	Q15319	PO4F3_HUMAN	POU class 4 homeobox 3	146					sensory perception of sound|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0			KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			ACAGATCCATCCACACCACCT	0.677													14	23					0	0	0.002450	0	0
GALNT10	55568	broad.mit.edu	37	5	153709196	153709196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:153709196G>A	uc003lvh.2	+	4	598	c.466G>A	c.(466-468)GAG>AAG	p.E156K	GALNT10_uc003lvg.1_Missense_Mutation_p.E156K|GALNT10_uc010jic.2_RNA|GALNT10_uc010jid.2_Missense_Mutation_p.E59K	NM_198321	NP_938080	Q86SR1	GLT10_HUMAN	GalNAc transferase 10 isoform a	156	Catalytic subdomain A.|Lumenal (Potential).					Golgi membrane|integral to membrane	metal ion binding|polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(2)	2	Renal(175;0.00488)	Medulloblastoma(196;0.0354)|all_neural(177;0.147)|all_hematologic(541;0.21)	Kidney(363;8.21e-05)|KIRC - Kidney renal clear cell carcinoma(527;0.000577)			CTTCCACAACGAGGGCTGGTC	0.582													22	36					0	0	0.014323	0	0
KIF4B	285643	broad.mit.edu	37	5	154393533	154393533	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:154393533G>A	uc010jih.1	+	1	274	c.114G>A	c.(112-114)GAG>GAA	p.E38E		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	38	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			TGCCCGGGGAGACTCAGGTGG	0.527													12	35					0	0	0.001855	0	0
FAM71B	153745	broad.mit.edu	37	5	156589928	156589928	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:156589928C>T	uc003lwn.2	-	2	1448	c.1348G>A	c.(1348-1350)GGT>AGT	p.G450S		NM_130899	NP_570969	Q8TC56	FA71B_HUMAN	family with sequence similarity 71, member B	450	Bipartite nuclear localization signal (Potential).					nucleus				ovary(4)|pancreas(1)|skin(1)	6	Renal(175;0.00212)	Medulloblastoma(196;0.0523)|all_neural(177;0.21)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGACTTTCACCTGCCTTGCGG	0.483													145	312					0	0	0.014410	0	0
ITK	3702	broad.mit.edu	37	5	156638340	156638340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:156638340C>T	uc003lwo.1	+	3	368	c.286C>T	c.(286-288)CGT>TGT	p.R96C		NM_005546	NP_005537	Q08881	ITK_HUMAN	IL2-inducible T-cell kinase	96	PH.				cellular defense response|intracellular signal transduction|T cell receptor signaling pathway	cytosol|plasma membrane	ATP binding|metal ion binding|non-membrane spanning protein tyrosine kinase activity|protein binding	p.R96H(1)		lung(12)|ovary(8)|skin(4)|stomach(1)|central_nervous_system(1)	26	Renal(175;0.00212)	Medulloblastoma(196;0.0354)|all_neural(177;0.1)	Kidney(164;0.000171)|KIRC - Kidney renal clear cell carcinoma(164;0.000785)			TGCTCCAGATCGTGAGAGCCG	0.493			T	SYK	peripheral T-cell lymphoma								139	270					0	0	0.014410	0	0
GABRA1	2554	broad.mit.edu	37	5	161302609	161302609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:161302609C>T	uc010jiw.2	+	7	988	c.520C>T	c.(520-522)CCT>TCT	p.P174S	GABRA1_uc010jix.2_Missense_Mutation_p.P174S|GABRA1_uc010jiy.2_Missense_Mutation_p.P174S|GABRA1_uc003lyx.3_Missense_Mutation_p.P174S|GABRA1_uc010jiz.2_Missense_Mutation_p.P174S|GABRA1_uc010jja.2_Missense_Mutation_p.P174S|GABRA1_uc010jjb.2_Missense_Mutation_p.P174S	NM_000806	NP_000797	P14867	GBRA1_HUMAN	gamma-aminobutyric acid (GABA) A receptor, alpha	174	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|pancreas(1)	3	Renal(175;0.00259)	Medulloblastoma(196;0.0208)|all_neural(177;0.0672)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.228)	Alprazolam(DB00404)|Butabarbital(DB00237)|Butalbital(DB00241)|Butethal(DB01353)|Chlordiazepoxide(DB00475)|Clobazam(DB00349)|Clonazepam(DB01068)|Clorazepate(DB00628)|Desflurane(DB01189)|Diazepam(DB00829)|Enflurane(DB00228)|Ethanol(DB00898)|Ethchlorvynol(DB00189)|Etomidate(DB00292)|Flumazenil(DB01205)|Flurazepam(DB00690)|Halazepam(DB00801)|Halothane(DB01159)|Hexobarbital(DB01355)|Isoflurane(DB00753)|Lorazepam(DB00186)|Meprobamate(DB00371)|Metharbital(DB00463)|Methohexital(DB00474)|Methoxyflurane(DB01028)|Methylphenobarbital(DB00849)|Methyprylon(DB01107)|Midazolam(DB00683)|Nitrazepam(DB01595)|Oxazepam(DB00842)|Pentobarbital(DB00312)|Phenobarbital(DB01174)|Picrotoxin(DB00466)|Prazepam(DB01588)|Primidone(DB00794)|Progabide(DB00837)|Propofol(DB00818)|Quazepam(DB01589)|Secobarbital(DB00418)|Sevoflurane(DB01236)|Talbutal(DB00306)|Thiamylal(DB01154)|Thiopental(DB00599)|Topiramate(DB00273)|Zaleplon(DB00962)|Zolpidem(DB00425)	GGAGGACTTCCCTATGGATGC	0.378													19	61					0	0	0.012319	0	0
GABRP	2568	broad.mit.edu	37	5	170232762	170232762	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:170232762G>A	uc003mau.2	+	7	782	c.584G>A	c.(583-585)GGG>GAG	p.G195E	GABRP_uc011dev.1_Missense_Mutation_p.G195E	NM_014211	NP_055026	O00591	GBRP_HUMAN	gamma-aminobutyric acid (GABA) A receptor, pi	195	Extracellular (Potential).					cell junction|chloride channel complex|postsynaptic membrane	chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			breast(1)	1	Renal(175;0.000159)|Lung NSC(126;0.0122)|all_lung(126;0.0193)	Medulloblastoma(196;0.0109)|all_neural(177;0.0298)	Kidney(164;7.24e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000516)			TGGCTGAGAGGGAACGACTCT	0.527													15	24					0	0	0.003163	0	0
DRD1	1812	broad.mit.edu	37	5	174868996	174868996	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:174868996C>T	uc003mcz.2	-	2	2052	c.1107G>A	c.(1105-1107)GCG>GCA	p.A369A		NM_000794	NP_000785	P21728	DRD1_HUMAN	dopamine receptor D1	369	Cytoplasmic (Potential).				activation of adenylate cyclase activity by dopamine receptor signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|adult walking behavior|cerebral cortex GABAergic interneuron migration|elevation of cytosolic calcium ion concentration involved in G-protein signaling coupled to IP3 second messenger|mating behavior|positive regulation of cAMP biosynthetic process|positive regulation of cell migration|positive regulation of potassium ion transport|positive regulation of release of sequestered calcium ion into cytosol|positive regulation of synaptic transmission, glutamatergic|prepulse inhibition|response to drug|synapse assembly|visual learning	endoplasmic reticulum membrane|membrane fraction	protein binding			ovary(2)|skin(1)	3	all_cancers(89;0.00895)|Renal(175;0.000159)|Lung NSC(126;0.00625)|all_lung(126;0.0104)	Medulloblastoma(196;0.0208)|all_neural(177;0.0277)|all_hematologic(541;0.214)	Kidney(164;3.85e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000183)		Acetophenazine(DB01063)|Amantadine(DB00915)|Apomorphine(DB00714)|Carphenazine(DB01038)|Chlorprothixene(DB01239)|Clozapine(DB00363)|Cocaine(DB00907)|Dopamine(DB00988)|Fenoldopam(DB00800)|Flupenthixol(DB00875)|Fluphenazine(DB00623)|Haloperidol(DB00502)|Levodopa(DB01235)|Lisuride(DB00589)|Loxapine(DB00408)|Methylergonovine(DB00353)|Minaprine(DB00805)|Olanzapine(DB00334)|Pegademase bovine(DB00061)|Pergolide(DB01186)|Perphenazine(DB00850)|Prochlorperazine(DB00433)|Promazine(DB00420)|Propiomazine(DB00777)|Quetiapine(DB01224)|Thiethylperazine(DB00372)|Thioridazine(DB00679)|Triflupromazine(DB00508)|Zuclopenthixol(DB01624)	TGGAAAACATCGCGGCCCCAT	0.498													14	101					0	0	0.002450	0	0
CDHR2	54825	broad.mit.edu	37	5	176005596	176005596	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:176005596C>T	uc003mem.1	+	16	1871	c.1805C>T	c.(1804-1806)TCC>TTC	p.S602F	CDHR2_uc003men.1_Missense_Mutation_p.S602F	NM_017675	NP_060145	Q9BYE9	CDHR2_HUMAN	protocadherin LKC precursor	602	Extracellular (Potential).|Cadherin 6.				homophilic cell adhesion|negative regulation of cell growth	apical plasma membrane|cell junction|integral to membrane	calcium ion binding|protein binding			ovary(2)	2						GGCAATGTCTCCGTGACCATC	0.612													11	32					0	0	0.001855	0	0
ZFP2	80108	broad.mit.edu	37	5	178359314	178359314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:178359314G>A	uc003mjn.1	+	5	1509	c.1000G>A	c.(1000-1002)GCT>ACT	p.A334T	ZFP2_uc010jky.2_Missense_Mutation_p.A334T|ZFP2_uc010jkx.1_Missense_Mutation_p.A334T	NM_030613	NP_085116	Q6ZN57	ZFP2_HUMAN	zinc finger protein 2 homolog	334	C2H2-type 9.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.00655)|GBM - Glioblastoma multiforme(465;0.0302)|OV - Ovarian serous cystadenocarcinoma(192;0.0615)|Epithelial(171;0.111)		GTGTGGAAAAGCTTTCAGTAA	0.378													10	21					0	0	0.006214	0	0
GFPT2	9945	broad.mit.edu	37	5	179728600	179728600	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr5:179728600G>A	uc003mlw.1	-	19	2111	c.2013C>T	c.(2011-2013)TTC>TTT	p.F671F		NM_005110	NP_005101	O94808	GFPT2_HUMAN	glutamine-fructose-6-phosphate transaminase 2	671	SIS 2.				dolichol-linked oligosaccharide biosynthetic process|energy reserve metabolic process|fructose 6-phosphate metabolic process|glutamine metabolic process|post-translational protein modification|protein N-linked glycosylation via asparagine|UDP-N-acetylglucosamine biosynthetic process	cytosol	glutamine-fructose-6-phosphate transaminase (isomerizing) activity|sugar binding			ovary(1)|skin(1)	2	all_cancers(89;4.97e-05)|all_epithelial(37;1.22e-05)|Renal(175;0.000269)|Lung NSC(126;0.00199)|all_lung(126;0.00351)|Breast(19;0.137)	Medulloblastoma(196;0.0392)|all_neural(177;0.0529)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)		L-Glutamine(DB00130)	GATTTCTGGGGAAGTCAACCT	0.453													24	61					0	0	0.003954	0	0
EXOC2	55770	broad.mit.edu	37	6	599152	599152	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:599152A>T	uc003mtd.2	-	8	950	c.816T>A	c.(814-816)AAT>AAA	p.N272K	EXOC2_uc003mte.2_Missense_Mutation_p.N272K|EXOC2_uc011dho.1_Intron	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	272					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		CATTGAGTGCATTTCTAGTGG	0.333													16	141					0	0	0.008871	0	0
EXOC2	55770	broad.mit.edu	37	6	599156	599156	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:599156C>T	uc003mtd.2	-	8	946	c.812G>A	c.(811-813)AGA>AAA	p.R271K	EXOC2_uc003mte.2_Missense_Mutation_p.R271K|EXOC2_uc011dho.1_Intron	NM_018303	NP_060773	Q96KP1	EXOC2_HUMAN	Sec5 protein	271					exocytosis|protein transport					breast(4)|ovary(2)|pancreas(1)	7	Ovarian(93;0.0733)	Breast(5;0.0014)|all_lung(73;0.0697)|all_hematologic(90;0.0897)		OV - Ovarian serous cystadenocarcinoma(45;0.0507)|BRCA - Breast invasive adenocarcinoma(62;0.14)		GAGTGCATTTCTAGTGGAATC	0.333													18	138					0	0	0.010504	0	0
MYLK4	340156	broad.mit.edu	37	6	2685565	2685565	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:2685565G>A	uc003mty.3	-	6	807	c.510C>T	c.(508-510)TTC>TTT	p.F170F		NM_001012418	NP_001012418	Q86YV6	MYLK4_HUMAN	myosin light chain kinase family, member 4	170	Protein kinase.						ATP binding|protein serine/threonine kinase activity			breast(3)|ovary(1)	4	Ovarian(93;0.0412)	all_hematologic(90;0.0897)				TCTTAGACTCGAAGGCATCGT	0.562													32	93					0	0	0.004289	0	0
FAM50B	26240	broad.mit.edu	37	6	3850489	3850489	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:3850489G>A	uc003mvu.2	+	2	556	c.444G>A	c.(442-444)GTG>GTA	p.V148V		NM_012135	NP_036267	Q9Y247	FA50B_HUMAN	family with sequence similarity 50, member B	148						nucleus				pancreas(1)	1	Ovarian(93;0.0925)	all_hematologic(90;0.108)				ACCCCGACGTGGACACCAGCT	0.662													8	45					0	0	0.003080	0	0
GCM2	9247	broad.mit.edu	37	6	10874463	10874463	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:10874463G>A	uc003mzn.3	-	5	1358	c.1286C>T	c.(1285-1287)CCC>CTC	p.P429L	SYCP2L_uc011dim.1_Intron	NM_004752	NP_004743	O75603	GCM2_HUMAN	glial cells missing homolog 2	429					cellular calcium ion homeostasis|cellular phosphate ion homeostasis|parathyroid gland development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding|sequence-specific DNA binding			ovary(2)|central_nervous_system(1)	3	Breast(50;0.0838)|Ovarian(93;0.107)	all_hematologic(90;0.135)				AGGACCCCAGGGTTCTGGATA	0.552													12	31					0	0	0.001855	0	0
TBC1D7	51256	broad.mit.edu	37	6	13306760	13306760	+	Splice_Site	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:13306760C>T	uc003naj.2	-	7	757	c.666_splice	c.e7-1	p.R222_splice	TBC1D7_uc011dis.1_Intron|TBC1D7_uc003nan.2_Splice_Site_p.R222_splice|TBC1D7_uc003nal.2_Splice_Site_p.R222_splice|TBC1D7_uc003nam.2_Splice_Site_p.R222_splice|TBC1D7_uc003nao.2_Splice_Site_p.R195_splice|TBC1D7_uc010jpd.2_Splice_Site_p.R176_splice|TBC1D7_uc003nap.2_Intron	NM_016495	NP_057579	Q9P0N9	TBCD7_HUMAN	TBC1 domain family, member 7 isoform a						positive regulation of protein ubiquitination	cytoplasmic membrane-bounded vesicle	protein binding|Rab GTPase activator activity			ovary(1)	1	Breast(50;0.0296)|Ovarian(93;0.0339)	all_hematologic(90;0.135)	Epithelial(50;0.0784)|BRCA - Breast invasive adenocarcinoma(129;0.13)|all cancers(50;0.21)			ATCCCAAACCCTACAAAAATA	0.289													10	92					0	0	0.008291	0	0
KIAA0319	9856	broad.mit.edu	37	6	24547428	24547428	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:24547428C>T	uc011djo.1	-	21	3421	c.3184G>A	c.(3184-3186)GGA>AGA	p.G1062R	KIAA0319_uc011djp.1_Missense_Mutation_p.G1017R|KIAA0319_uc003neh.1_Missense_Mutation_p.G1062R|KIAA0319_uc011djq.1_Missense_Mutation_p.G1053R|KIAA0319_uc011djr.1_Missense_Mutation_p.G1001R|KIAA0319_uc010jpt.1_Missense_Mutation_p.G473R	NM_014809	NP_055624	Q5VV43	K0319_HUMAN	KIAA0319 precursor	1062	Cytoplasmic (Potential).				negative regulation of dendrite development|neuron migration	early endosome membrane|integral to membrane|plasma membrane	protein binding			ovary(1)|skin(1)	2						AAGGAAGCTCCATTTCTGATG	0.463													14	91					0	0	0.003163	0	0
HIST1H2BH	8345	broad.mit.edu	37	6	26252154	26252154	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:26252154C>T	uc003nhh.2	+	1	276	c.276C>T	c.(274-276)TCC>TCT	p.S92S	HIST1H3F_uc003nhg.1_5'Flank	NM_003524	NP_003515	Q93079	H2B1H_HUMAN	histone cluster 1, H2bh	92					nucleosome assembly	nucleosome|nucleus	DNA binding			ovary(3)	3						CCATCACCTCCAGGGAGATCC	0.602													9	71					0	0	0.008291	0	0
HIST1H2BM	8342	broad.mit.edu	37	6	27782846	27782846	+	Missense_Mutation	SNP	C	T	T	rs141452609	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:27782846C>T	uc003njo.2	+	1	25	c.25C>T	c.(25-27)CCA>TCA	p.P9S	HIST1H2AJ_uc003njn.1_5'Flank	NM_003521	NP_003512	Q99879	H2B1M_HUMAN	histone cluster 1, H2bm	9					nucleosome assembly	nucleosome|nucleus	DNA binding			large_intestine(1)	1						CAAATCTGCTCCAGTCCCTAA	0.428													5	51					0	0	0.001984	0	0
C6orf15	29113	broad.mit.edu	37	6	31079814	31079814	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:31079814C>T	uc003nsk.1	-	2	322	c.322G>A	c.(322-324)GAT>AAT	p.D108N	PSORS1C1_uc003nsl.1_5'Flank|PSORS1C1_uc010jsj.1_5'Flank	NM_014070	NP_054789	Q6UXA7	CF015_HUMAN	STG protein precursor	108											0						GGCCAGGAATCCATGGCAGGC	0.627													12	39					0	0	0.013537	0	0
TNXB	7148	broad.mit.edu	37	6	31977639	31977639	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:31977639C>T	uc011dpc.1	-	12	2265	c.1356G>A	c.(1354-1356)CGG>CGA	p.R452R		NM_032470	NP_115859	P22105	TENX_HUMAN	tenascin XB isoform 2	4068	Fibrinogen C-terminal.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GGAAGGGGATCCGCAGCCCAC	0.701													10	70					0	0	0.010729	0	0
TNXB	7148	broad.mit.edu	37	6	32053803	32053803	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:32053803G>T	uc003nzl.2	-	7	3074	c.2872C>A	c.(2872-2874)CAG>AAG	p.Q958K		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1045					actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						TGGGGGCGCTGCTGCAGGAGA	0.667													58	149					1.72845e-40	1.87907e-40	0.014410	1	0
EGFL8	80864	broad.mit.edu	37	6	32135728	32135728	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:32135728C>T	uc003oab.1	+	9	935	c.877C>T	c.(877-879)CGA>TGA	p.R293*	PPT2_uc003nzy.1_RNA|EGFL8_uc003oac.1_Nonsense_Mutation_p.R293*	NM_030652	NP_085155	Q99944	EGFL8_HUMAN	NG3 protein precursor	293						extracellular region|integral to membrane	calcium ion binding				0						CGTCAATCATCGATAAGAAGC	0.547													36	232					0	0	0.004878	0	0
FANCE	2178	broad.mit.edu	37	6	35434023	35434023	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:35434023C>T	uc003oko.1	+	10	1697	c.1512C>T	c.(1510-1512)ATC>ATT	p.I504I	FANCE_uc010jvw.1_Silent_p.I497I|RPL10A_uc003okp.1_5'Flank|RPL10A_uc003okq.1_5'Flank|RPL10A_uc003okr.1_5'Flank|RPL10A_uc003oks.1_5'Flank	NM_021922	NP_068741	Q9HB96	FANCE_HUMAN	Fanconi anemia, complementation group E	504					DNA repair	nucleoplasm	protein binding			ovary(1)|lung(1)|skin(1)	3						CTCCCCAGATCACTGAGACCC	0.582			N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				6	66					0	0	0.004482	0	0
MAPK13	5603	broad.mit.edu	37	6	36106539	36106539	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:36106539C>T	uc003ols.2	+	10	921	c.823C>T	c.(823-825)CCA>TCA	p.P275S	MAPK13_uc003olt.2_RNA	NM_002754	NP_002745	O15264	MK13_HUMAN	mitogen-activated protein kinase 13	275	Protein kinase.				cell cycle|intracellular protein kinase cascade|nerve growth factor receptor signaling pathway|positive regulation of interleukin-6 production|Ras protein signal transduction|response to stress		ATP binding|MAP kinase activity|protein binding			breast(2)|central_nervous_system(1)	3						TCAGCTGTTCCCACGGGCCAG	0.627													6	33					0	0	0.001984	0	0
FTSJD2	23070	broad.mit.edu	37	6	37443964	37443964	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:37443964C>T	uc003ons.2	+	20	2352	c.2099C>T	c.(2098-2100)CCC>CTC	p.P700L		NM_015050	NP_055865	Q8N1G2	MTR1_HUMAN	FtsJ methyltransferase domain containing 2	700					mRNA capping	cytoplasm|nucleus	mRNA (nucleoside-2'-O-)-methyltransferase activity|nucleic acid binding			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GACATGAATCCCATCAGGTGA	0.547													24	72					0	0	0.005443	0	0
MDGA1	266727	broad.mit.edu	37	6	37606050	37606051	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:37606050_37606051CC>TT	uc003onu.1	-	16	3885_3886	c.2706_2707GG>AA	c.(2704-2709)GGGGAT>GGAAAT	p.D903N	MDGA1_uc003onv.1_Missense_Mutation_p.D172N	NM_153487	NP_705691	Q8NFP4	MDGA1_HUMAN	MAM domain containing	903	MAM.				brain development|neuron migration|spinal cord association neuron differentiation	anchored to plasma membrane				central_nervous_system(2)	2						ATGGCAATATCCCCCAGGTAGC	0.574													7	25					0	0	0.004672	0	0
KCNK17	89822	broad.mit.edu	37	6	39267425	39267425	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:39267425G>A	uc003ooo.2	-	5	917	c.777C>T	c.(775-777)ATC>ATT	p.I259I	KCNK17_uc003oop.2_3'UTR	NM_031460	NP_113648	Q96T54	KCNKH_HUMAN	potassium channel, subfamily K, member 17	259	Helical; (Potential).					integral to membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2						TGAGTTTGATGATCAAGGCCA	0.557													11	105					0	0	0.010729	0	0
LRFN2	57497	broad.mit.edu	37	6	40359880	40359880	+	Silent	SNP	G	A	A	rs144850104	byFrequency	TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:40359880G>A	uc003oph.1	-	3	2637	c.2172C>T	c.(2170-2172)TTC>TTT	p.F724F		NM_020737	NP_065788	Q9ULH4	LRFN2_HUMAN	leucine rich repeat and fibronectin type III	724	Cytoplasmic (Potential).					cell junction|integral to membrane|postsynaptic membrane				ovary(2)|skin(1)	3	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCCCCATGTCGAAGGAGTGGC	0.692													8	11					0	0	0.003080	0	0
FRS3	10817	broad.mit.edu	37	6	41743249	41743249	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:41743249G>A	uc003orc.1	-	4	405	c.161C>T	c.(160-162)GCC>GTC	p.A54V		NM_006653	NP_006644	O43559	FRS3_HUMAN	fibroblast growth factor receptor substrate 3	54	IRS-type PTB.				fibroblast growth factor receptor signaling pathway	plasma membrane	fibroblast growth factor receptor binding|insulin receptor binding			ovary(2)	2	Ovarian(28;0.0355)|Colorectal(47;0.121)		Epithelial(12;8.38e-05)|STAD - Stomach adenocarcinoma(11;0.000204)|Colorectal(64;0.00062)|COAD - Colon adenocarcinoma(64;0.00152)			CCAGCGGACGGCCTCACGCCG	0.612													5	28					0	0	0.000602	0	0
CUL9	23113	broad.mit.edu	37	6	43163864	43163864	+	Silent	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:43163864C>A	uc003ouk.2	+	10	2521	c.2446C>A	c.(2446-2448)CGA>AGA	p.R816R	CUL9_uc003oul.2_Silent_p.R816R|CUL9_uc010jyk.2_5'UTR	NM_015089	NP_055904	Q8IWT3	CUL9_HUMAN	p53-associated parkin-like cytoplasmic protein	816					ubiquitin-dependent protein catabolic process	cullin-RING ubiquitin ligase complex|cytoplasm	ATP binding|ubiquitin protein ligase binding|zinc ion binding			ovary(5)|lung(3)|skin(2)|breast(1)|central_nervous_system(1)	12						TGTTACTGGCCGAGATTCTAT	0.577													4	108					0.00909568	0.00968782	0.009096	1	0
PKHD1	5314	broad.mit.edu	37	6	51491840	51491840	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:51491840G>A	uc003pah.1	-	66	12016	c.11740C>T	c.(11740-11742)CGA>TGA	p.R3914*		NM_138694	NP_619639	P08F94	PKHD1_HUMAN	fibrocystin isoform 1	3914	Cytoplasmic (Potential).				cell-cell adhesion|cilium assembly|homeostatic process|kidney development|negative regulation of cellular component movement	anchored to external side of plasma membrane|apical plasma membrane|integral to membrane|microtubule basal body	protein binding|receptor activity			lung(15)|ovary(15)|large_intestine(5)|central_nervous_system(3)|skin(3)|breast(2)|upper_aerodigestive_tract(1)	44	Lung NSC(77;0.0605)					TGTGATTCTCGGCGTTTGGAT	0.438													11	109					0	0	0.008291	0	0
FAM83B	222584	broad.mit.edu	37	6	54735063	54735063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:54735063C>T	uc003pck.2	+	2	135	c.19C>T	c.(19-21)CTT>TTT	p.L7F		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	7										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					CTCATCAATGCTTTCCTCATT	0.398													8	44					0	0	0.003080	0	0
FAM83B	222584	broad.mit.edu	37	6	54805297	54805297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:54805297G>A	uc003pck.2	+	5	1644	c.1528G>A	c.(1528-1530)GAC>AAC	p.D510N		NM_001010872	NP_001010872	Q5T0W9	FA83B_HUMAN	hypothetical protein LOC222584	510										ovary(6)	6	Lung NSC(77;0.0178)|Renal(3;0.122)					AGCTACACCGGACTCAAATGG	0.423													6	46					0	0	0.001168	0	0
COL19A1	1310	broad.mit.edu	37	6	70639420	70639420	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:70639420C>T	uc003pfc.1	+	6	611	c.494C>T	c.(493-495)CCT>CTT	p.P165L	COL19A1_uc010kam.1_Missense_Mutation_p.P61L	NM_001858	NP_001849	Q14993	COJA1_HUMAN	alpha 1 type XIX collagen precursor	165	TSP N-terminal.				cell differentiation|cell-cell adhesion|extracellular matrix organization|skeletal system development	collagen	extracellular matrix structural constituent|protein binding, bridging			ovary(2)|breast(2)	4						GAACTCCGTCCTTTGTTTGAT	0.393													21	36					0	0	0.012319	0	0
KHDC1L	100129128	broad.mit.edu	37	6	73935121	73935121	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:73935121C>T	uc003pgm.3	-	1	55	c.11G>A	c.(10-12)GGA>GAA	p.G4E	KHDC1_uc011dyl.1_RNA	NM_001126063	NP_001119535	Q5JSQ8	KHDCL_HUMAN	KH homology domain containing 1-like	4										skin(1)	1						AGCACTCGTTCCCACGGCCAT	0.532													11	10					0	0	0.013537	0	0
OOEP	441161	broad.mit.edu	37	6	74079101	74079101	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:74079101G>A	uc003pgu.3	-	2	198	c.198C>T	c.(196-198)GAC>GAT	p.D66D	OOEP_uc003pgv.3_Silent_p.D11D	NM_001080507	NP_001073976	A6NGQ2	OOEP_HUMAN	oocyte expressed protein homolog	66	KH; atypical.					cytoplasm					0						TTATGGCTCGGTCTGGGCCTA	0.537													8	9					0	0	0.003080	0	0
COL12A1	1303	broad.mit.edu	37	6	75893246	75893246	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:75893246C>T	uc003phs.2	-	10	1577	c.1411G>A	c.(1411-1413)GAA>AAA	p.E471K	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_Missense_Mutation_p.E129K	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	471	VWFA 2.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						GGTGAAATTTCAAAACTTTTT	0.353													33	55					0	0	0.010818	0	0
COL12A1	1303	broad.mit.edu	37	6	75898978	75898978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:75898978G>A	uc003phs.2	-	7	944	c.778C>T	c.(778-780)CCA>TCA	p.P260S	COL12A1_uc003pht.2_Intron|COL12A1_uc003phu.1_5'Flank	NM_004370	NP_004361	Q99715	COCA1_HUMAN	collagen, type XII, alpha 1 long isoform	260	VWFA 1.				cell adhesion|collagen fibril organization|skeletal system development	collagen type XII|extracellular space	extracellular matrix structural constituent conferring tensile strength			ovary(6)|large_intestine(1)|breast(1)|skin(1)	9						TCTCTTGCTGGAATTTCCACT	0.373													17	35					0	0	0.006122	0	0
FILIP1	27145	broad.mit.edu	37	6	76063340	76063340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:76063340C>T	uc003pia.2	-	4	917	c.544G>A	c.(544-546)GAG>AAG	p.E182K	FILIP1_uc003phy.1_Missense_Mutation_p.E182K|FILIP1_uc003phz.2_Missense_Mutation_p.E83K|FILIP1_uc010kbe.2_Missense_Mutation_p.E185K	NM_015687	NP_056502	Q7Z7B0	FLIP1_HUMAN	filamin A interacting protein 1	182										skin(3)|ovary(1)	4						TTCTCTAACTCGTATACGGTG	0.507													28	123					0	0	0.005443	0	0
IMPG1	3617	broad.mit.edu	37	6	76720925	76720925	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:76720925T>G	uc003pik.1	-	8	954	c.824A>C	c.(823-825)AAG>ACG	p.K275T		NM_001563	NP_001554	Q17R60	IMPG1_HUMAN	interphotoreceptor matrix proteoglycan 1	275	SEA 1.				visual perception	proteinaceous extracellular matrix	extracellular matrix structural constituent|receptor activity			ovary(2)|skin(1)	3		Acute lymphoblastic leukemia(125;0.0418)|all_hematologic(105;0.222)				TGGAAGTTTCTTAAATATCTT	0.323													4	60					0	0	0.009096	0	0
DOPEY1	23033	broad.mit.edu	37	6	83847360	83847360	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:83847360C>T	uc003pjs.1	+	21	3859	c.3599C>T	c.(3598-3600)TCC>TTC	p.S1200F	DOPEY1_uc011dyy.1_Missense_Mutation_p.S1191F|DOPEY1_uc010kbl.1_Missense_Mutation_p.S1191F|DOPEY1_uc003pjt.2_RNA	NM_015018	NP_055833	Q5JWR5	DOP1_HUMAN	dopey family member 1	1200					protein transport					ovary(2)|breast(1)|central_nervous_system(1)	4		all_cancers(76;2.29e-06)|Acute lymphoblastic leukemia(125;3.41e-06)|all_hematologic(105;0.000865)|all_epithelial(107;0.00203)		BRCA - Breast invasive adenocarcinoma(397;0.053)		GAAGATGACTCCATTCAACAG	0.418													20	45					0	0	0.008871	0	0
GJA10	84694	broad.mit.edu	37	6	90604872	90604872	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:90604872G>A	uc011eaa.1	+	1	685	c.685G>A	c.(685-687)GAA>AAA	p.E229K		NM_032602	NP_115991	Q969M2	CXA10_HUMAN	gap junction protein, alpha 10	229	Helical; (Potential).				synaptic transmission	connexon complex|integral to membrane	gap junction channel activity				0		all_cancers(76;5.71e-06)|Acute lymphoblastic leukemia(125;2.23e-10)|Prostate(29;5.55e-10)|all_hematologic(105;2.42e-06)|all_epithelial(107;0.00527)		BRCA - Breast invasive adenocarcinoma(108;0.0915)		CAATATACTGGAAATATTTCA	0.403													16	50					0	0	0.004007	0	0
C6orf182	285753	broad.mit.edu	37	6	109484108	109484108	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:109484108C>T	uc010kdk.2	+	13	1895	c.1318C>T	c.(1318-1320)CAT>TAT	p.H440Y	C6orf182_uc003psx.3_3'UTR|C6orf182_uc010kdl.2_Missense_Mutation_p.H440Y|C6orf182_uc003psy.3_Missense_Mutation_p.H440Y	NM_001083535	NP_001077004	Q8IYX8	CE57L_HUMAN	hypothetical protein LOC285753	440						microtubule|microtubule organizing center					0		all_cancers(87;4.45e-07)|Acute lymphoblastic leukemia(125;2.15e-10)|all_hematologic(75;3.25e-08)|all_epithelial(87;0.000254)|Colorectal(196;0.0293)|all_lung(197;0.11)		BRCA - Breast invasive adenocarcinoma(108;0.00123)|Epithelial(106;0.0022)|all cancers(137;0.00405)|OV - Ovarian serous cystadenocarcinoma(136;0.0233)		CAGCAGCTTTCATCCAATACG	0.353													4	21					0	0	0.009096	0	0
CLVS2	134829	broad.mit.edu	37	6	123377155	123377155	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:123377155C>T	uc003pzi.1	+	5	1749	c.880C>T	c.(880-882)CCA>TCA	p.P294S		NM_001010852	NP_001010852	Q5SYC1	CLVS2_HUMAN	retinaldehyde binding protein 1-like 2	294					lysosome organization	clathrin-coated vesicle|early endosome membrane|trans-Golgi network	phosphatidylinositol-3,5-bisphosphate binding|transporter activity			ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|pancreas(1)	5						GGAACTCTCCCCAAAGTCCAT	0.502													4	20					0	0	0.009096	0	0
PTPRK	5796	broad.mit.edu	37	6	128312513	128312513	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:128312513C>T	uc003qbk.2	-	20	3269	c.2902G>A	c.(2902-2904)GAT>AAT	p.D968N	PTPRK_uc003qbj.2_Missense_Mutation_p.D969N|PTPRK_uc010kfc.2_Missense_Mutation_p.D975N|PTPRK_uc011ebu.1_Missense_Mutation_p.D991N	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	968	Tyrosine-protein phosphatase 1.|Cytoplasmic (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CTCCAGAAATCATACACTGTT	0.328													5	29					0	0	0.000602	0	0
PTPRK	5796	broad.mit.edu	37	6	128505770	128505770	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:128505770G>A	uc003qbk.2	-	7	1336	c.969C>T	c.(967-969)ATC>ATT	p.I323I	PTPRK_uc003qbj.2_Silent_p.I323I|PTPRK_uc010kfc.2_Silent_p.I323I|PTPRK_uc011ebu.1_Silent_p.I323I|PTPRK_uc003qbl.1_Silent_p.I193I|PTPRK_uc011ebv.1_Silent_p.I323I	NM_002844	NP_002835	Q15262	PTPRK_HUMAN	protein tyrosine phosphatase, receptor type, K	323	Fibronectin type-III 1.|Extracellular (Potential).				cell migration|cellular response to reactive oxygen species|cellular response to UV|focal adhesion assembly|negative regulation of cell cycle|negative regulation of cell migration|negative regulation of keratinocyte proliferation|negative regulation of transcription, DNA-dependent|protein localization at cell surface|transforming growth factor beta receptor signaling pathway	adherens junction|cell surface|cell-cell junction|integral to plasma membrane|leading edge membrane	beta-catenin binding|gamma-catenin binding|protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			ovary(3)|skin(2)|pancreas(1)|kidney(1)|central_nervous_system(1)	8				all cancers(137;0.0118)|GBM - Glioblastoma multiforme(226;0.0372)|OV - Ovarian serous cystadenocarcinoma(136;0.24)		CTTTCAGGATGATAGGACCAT	0.453													32	66					0	0	0.010818	0	0
ENPP1	5167	broad.mit.edu	37	6	132201143	132201143	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:132201143C>T	uc011ecf.1	+	20	2089	c.2069C>T	c.(2068-2070)CCC>CTC	p.P690L		NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	690	Nuclease.|Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	ATCTTAATGCCCCTTTGGACA	0.403													8	95					0	0	0.004482	0	0
TAAR9	134860	broad.mit.edu	37	6	132859895	132859895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:132859895C>T	uc011eci.1	+	2	469	c.467C>T	c.(466-468)TCC>TTC	p.S156F		NM_175057	NP_778227	Q96RI9	TAAR9_HUMAN	trace amine associated receptor 9	156	Helical; Name=4; (Potential).					plasma membrane	G-protein coupled receptor activity				0	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.0042)|GBM - Glioblastoma multiforme(226;0.00816)		ATTGTTCTTTCCTGGTTCTTT	0.413													19	51					0	0	0.006122	0	0
EYA4	2070	broad.mit.edu	37	6	133789870	133789870	+	Splice_Site	SNP	G	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:133789870G>T	uc003qec.3	+	11	1428	c.970_splice	c.e11+1	p.G324_splice	EYA4_uc011ecq.1_Splice_Site_p.G270_splice|EYA4_uc011ecr.1_Missense_Mutation_p.G270V|EYA4_uc003qed.3_Splice_Site_p.G324_splice|EYA4_uc003qee.3_Splice_Site_p.G301_splice|EYA4_uc011ecs.1_Missense_Mutation_p.G324V|uc003qef.1_Intron	NM_004100	NP_004091	O95677	EYA4_HUMAN	eyes absent 4 isoform a						anatomical structure morphogenesis|chromatin modification|DNA repair|multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent|visual perception	cytoplasm|nucleus	metal ion binding|protein tyrosine phosphatase activity			large_intestine(2)	2	Colorectal(23;0.221)			GBM - Glioblastoma multiforme(68;0.00457)|OV - Ovarian serous cystadenocarcinoma(155;0.0152)		AACCAACCAGGTACAGATCTT	0.433													20	54					2.54575e-18	2.75559e-18	0.010504	1	0
MAP7	9053	broad.mit.edu	37	6	136693712	136693712	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:136693712G>A	uc003qgz.2	-	8	1049	c.803C>T	c.(802-804)TCG>TTG	p.S268L	MAP7_uc011edf.1_Missense_Mutation_p.S253L|MAP7_uc011edg.1_Missense_Mutation_p.S298L|MAP7_uc010kgu.2_Missense_Mutation_p.S290L|MAP7_uc011edh.1_Missense_Mutation_p.S253L|MAP7_uc010kgv.2_Missense_Mutation_p.S290L|MAP7_uc010kgs.2_Missense_Mutation_p.S122L|MAP7_uc011edi.1_Missense_Mutation_p.S122L|MAP7_uc010kgq.1_Missense_Mutation_p.S174L|MAP7_uc003qha.1_Missense_Mutation_p.S231L|MAP7_uc010kgr.2_Missense_Mutation_p.S122L|MAP7_uc010kgt.2_Missense_Mutation_p.S290L|MAP7_uc003qhb.2_RNA	NM_003980	NP_003971	Q14244	MAP7_HUMAN	microtubule-associated protein 7	268					establishment or maintenance of cell polarity|microtubule cytoskeleton organization|protein localization in plasma membrane|response to osmotic stress	basolateral plasma membrane|microtubule|microtubule associated complex|nucleus|perinuclear region of cytoplasm	receptor binding|structural molecule activity				0	Colorectal(23;0.24)			GBM - Glioblastoma multiforme(68;0.00199)|OV - Ovarian serous cystadenocarcinoma(155;0.00643)		TCGATCCATCGAATTTCTAGA	0.512													13	35					0	0	0.013537	0	0
CCDC28A	25901	broad.mit.edu	37	6	139094890	139094890	+	Missense_Mutation	SNP	C	T	T	rs143573686		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:139094890C>T	uc003qie.2	+	1	234	c.79C>T	c.(79-81)CTC>TTC	p.L27F	uc003qid.1_5'Flank	NM_015439	NP_056254	Q8IWP9	CC28A_HUMAN	coiled-coil domain containing 28A	27											0				OV - Ovarian serous cystadenocarcinoma(155;0.000201)|GBM - Glioblastoma multiforme(68;0.000306)		GAGGCTGTACCTCTTACGTCA	0.632													50	106					0	0	0.014410	0	0
TAB2	23118	broad.mit.edu	37	6	149700528	149700528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:149700528C>T	uc003qmj.2	+	3	1655	c.1477C>T	c.(1477-1479)CAT>TAT	p.H493Y	TAB2_uc011eec.1_Missense_Mutation_p.H461Y|TAB2_uc010kia.1_Missense_Mutation_p.H493Y|TAB2_uc010kib.1_Missense_Mutation_p.H493Y|TAB2_uc003qmk.3_RNA	NM_015093	NP_055908	Q9NYJ8	TAB2_HUMAN	mitogen-activated protein kinase kinase kinase 7	493					activation of MAPK activity|heart development|I-kappaB kinase/NF-kappaB cascade|innate immune response|JNK cascade|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of NF-kappaB transcription factor activity|stress-activated MAPK cascade|T cell receptor signaling pathway|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|endosome membrane|plasma membrane	K63-linked polyubiquitin binding|zinc ion binding				0						TCTTCTTAATCATCCTGATCA	0.423													15	42					0	0	0.002450	0	0
NOX3	50508	broad.mit.edu	37	6	155718019	155718019	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:155718019G>A	uc003qqm.2	-	13	1761	c.1658C>T	c.(1657-1659)TCA>TTA	p.S553L		NM_015718	NP_056533	Q9HBY0	NOX3_HUMAN	NADPH oxidase 3	553	Cytoplasmic (Potential).						electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			ovary(1)	1		Breast(66;0.0183)		OV - Ovarian serous cystadenocarcinoma(155;2.18e-12)|BRCA - Breast invasive adenocarcinoma(81;0.00815)		GGGGTCAGCTGATGAATACAA	0.463													19	54					0	0	0.006122	0	0
LPA	4018	broad.mit.edu	37	6	161007493	161007493	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:161007493G>A	uc003qtl.2	-	26	4237	c.4117C>T	c.(4117-4119)CCT>TCT	p.P1373S		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3881	Kringle 34.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	TCTTCAGAAGGAAGCTCTGTG	0.478													11	42					0	0	0.004007	0	0
PARK2	5071	broad.mit.edu	37	6	161807882	161807882	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:161807882C>T	uc003qtx.3	-	10	1245	c.1111G>A	c.(1111-1113)GCG>ACG	p.A371T	PARK2_uc003qtv.3_RNA|PARK2_uc010kkd.2_Missense_Mutation_p.A180T|PARK2_uc003qtw.3_Missense_Mutation_p.A180T|PARK2_uc003qty.3_Missense_Mutation_p.A343T|PARK2_uc003qtz.3_Missense_Mutation_p.A222T|PARK2_uc011egf.1_Missense_Mutation_p.A45T	NM_004562	NP_004553	O60260	PRKN2_HUMAN	parkin isoform 1	371	IBR-type.		A -> T (in a patient with Parkinson disease; unknown pathological significance).		aggresome assembly|central nervous system development|mitochondrion degradation|negative regulation of actin filament bundle assembly|negative regulation of cell death|negative regulation of protein phosphorylation|negative regulation of release of cytochrome c from mitochondria|neuron death|positive regulation of I-kappaB kinase/NF-kappaB cascade|protein autoubiquitination|protein K48-linked ubiquitination|protein K63-linked ubiquitination|protein monoubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of autophagy|regulation of reactive oxygen species metabolic process	aggresome|cytosol|endoplasmic reticulum|Golgi apparatus|mitochondrion|nucleus|perinuclear region of cytoplasm	chaperone binding|PDZ domain binding|protein kinase binding|ubiquitin protein ligase binding|ubiquitin-protein ligase activity|zinc ion binding			upper_aerodigestive_tract(1)	1		all_cancers(1;8.13e-65)|all_epithelial(1;5.77e-64)|Colorectal(1;9.65e-15)|all_lung(1;1.66e-13)|Lung NSC(1;7.54e-11)|Melanoma(1;1.75e-09)|Breast(66;7.81e-05)|Ovarian(120;0.000981)|Prostate(117;0.0288)|Esophageal squamous(34;0.102)		UCEC - Uterine corpus endometrioid carcinoma (4;0.0663)|all cancers(1;1.9e-63)|Epithelial(1;1.5e-59)|Colorectal(1;2.16e-23)|OV - Ovarian serous cystadenocarcinoma(65;3.53e-20)|COAD - Colon adenocarcinoma(1;2.11e-15)|STAD - Stomach adenocarcinoma(1;4.64e-07)|BRCA - Breast invasive adenocarcinoma(81;1.49e-06)|READ - Rectum adenocarcinoma(1;2.95e-06)|GBM - Glioblastoma multiforme(2;7.23e-06)|Lung(1;0.00163)|KIRC - Kidney renal clear cell carcinoma(4;0.00371)|LUSC - Lung squamous cell carcinoma(1;0.00442)|Kidney(4;0.0046)		TCATGGTACGCTTCTTTACAT	0.458													18	47					0	0	0.008871	0	0
SMOC2	64094	broad.mit.edu	37	6	168927053	168927053	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:168927053A>C	uc003qws.1	+	3	304	c.284A>C	c.(283-285)AAG>ACG	p.K95T	SMOC2_uc003qwr.1_Missense_Mutation_p.K95T	NM_022138	NP_071421	Q9H3U7	SMOC2_HUMAN	SPARC related modular calcium binding 2	95	Thyroglobulin type-1 1.				signal transduction	basement membrane	calcium ion binding			ovary(1)	1		Breast(66;0.000141)|Esophageal squamous(34;0.222)|Ovarian(120;0.231)		OV - Ovarian serous cystadenocarcinoma(33;1.31e-19)|BRCA - Breast invasive adenocarcinoma(81;3.06e-06)|GBM - Glioblastoma multiforme(31;0.00109)		GCCGAAAGGAAGTATACCCAG	0.507													4	28					0	0	0.009096	0	0
PSMB1	5689	broad.mit.edu	37	6	170852708	170852708	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr6:170852708G>A	uc011ehe.1	-	4	501	c.414C>T	c.(412-414)ATC>ATT	p.I138I	PSMB1_uc003qxq.2_RNA|PSMB1_uc003qxr.2_Silent_p.I37I	NM_002793	NP_002784	P20618	PSB1_HUMAN	proteasome beta 1 subunit precursor	138					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|interspecies interaction between organisms|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	cell junction|cytoplasm|nucleus|proteasome core complex	protein binding|threonine-type endopeptidase activity			ovary(1)	1		Breast(66;5.08e-05)|Ovarian(120;0.0563)|Esophageal squamous(34;0.246)		OV - Ovarian serous cystadenocarcinoma(33;7.5e-23)|BRCA - Breast invasive adenocarcinoma(81;4.88e-06)|GBM - Glioblastoma multiforme(31;0.00643)	Bortezomib(DB00188)	CAAGTCCACCGATGATGTTGT	0.418													13	35					0	0	0.001855	0	0
MAD1L1	8379	broad.mit.edu	37	7	2269665	2269665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:2269665G>A	uc003slh.1	-	3	370	c.104C>T	c.(103-105)ACC>ATC	p.T35I	MAD1L1_uc003slf.1_Missense_Mutation_p.T35I|MAD1L1_uc003slg.1_Missense_Mutation_p.T35I|MAD1L1_uc010ksh.1_Missense_Mutation_p.T35I|MAD1L1_uc003sli.1_Intron|MAD1L1_uc010ksi.1_Missense_Mutation_p.T35I|MAD1L1_uc010ksj.2_Missense_Mutation_p.T35I	NM_001013836	NP_001013858	Q9Y6D9	MD1L1_HUMAN	MAD1-like 1 protein	35					cell division|mitotic anaphase|mitotic cell cycle spindle assembly checkpoint|mitotic metaphase|mitotic prometaphase|mitotic telophase	actin cytoskeleton|centrosome|condensed chromosome kinetochore|cytosol|mitochondrion|nucleus|spindle	protein binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0272)		UCEC - Uterine corpus endometrioid carcinoma (27;0.134)|OV - Ovarian serous cystadenocarcinoma(56;3.63e-14)		TGGGGCCGAGGTAGAAATATC	0.572													13	22					0	0	0.001855	0	0
CARD11	84433	broad.mit.edu	37	7	2959141	2959141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:2959141G>A	uc003smv.2	-	18	2779	c.2375C>T	c.(2374-2376)ACC>ATC	p.T792I		NM_032415	NP_115791	Q9BXL7	CAR11_HUMAN	caspase recruitment domain family, member 11	792					positive regulation of cytokine production|positive regulation of NF-kappaB transcription factor activity|regulation of apoptosis|T cell costimulation|T cell receptor signaling pathway	cytosol|membrane raft|plasma membrane	CARD domain binding|guanylate kinase activity			haematopoietic_and_lymphoid_tissue(43)|ovary(2)|kidney(2)|skin(2)|central_nervous_system(1)	50		Ovarian(82;0.0115)		OV - Ovarian serous cystadenocarcinoma(56;8.44e-14)		CAGGGACATGGTGCAGGCGTC	0.597			Mis		DLBCL								6	22					0	0	0.001984	0	0
COL28A1	340267	broad.mit.edu	37	7	7571504	7571504	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:7571504G>A	uc003src.1	-	3	273	c.156C>T	c.(154-156)ATC>ATT	p.I52I	COL28A1_uc011jxe.1_5'UTR	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	52	VWFA 1.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		AGCTGTCCACGATGAAGACAA	0.363													8	36					0	0	0.006214	0	0
PRPS1L1	221823	broad.mit.edu	37	7	18066664	18066664	+	Silent	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:18066664A>G	uc003stz.2	-	1	823	c.742T>C	c.(742-744)TTG>CTG	p.L248L		NM_175886	NP_787082	P21108	PRPS3_HUMAN	phosphoribosyl pyrophosphate synthetase 1-like	248					nucleoside metabolic process|ribonucleoside monophosphate biosynthetic process		ATP binding|kinase activity|magnesium ion binding|protein homodimerization activity|ribose phosphate diphosphokinase activity			ovary(1)	1	Lung NSC(10;0.0385)|all_lung(11;0.0736)					CCATGAGTCAAGATAGCATAA	0.458													12	50					0	0	0.013537	0	0
HDAC9	9734	broad.mit.edu	37	7	18801793	18801793	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:18801793G>A	uc003suh.2	+	14	2089	c.2048G>A	c.(2047-2049)CGA>CAA	p.R683Q	HDAC9_uc003sue.2_Missense_Mutation_p.R683Q|HDAC9_uc011jyd.1_Missense_Mutation_p.R683Q|HDAC9_uc003sui.2_Missense_Mutation_p.R686Q|HDAC9_uc003suj.2_Missense_Mutation_p.R642Q|HDAC9_uc003sua.1_Missense_Mutation_p.R661Q	NM_058176	NP_478056	Q9UKV0	HDAC9_HUMAN	histone deacetylase 9 isoform 1	683	Histone deacetylase.				B cell differentiation|cellular response to insulin stimulus|heart development|histone H3 deacetylation|histone H4 deacetylation|inflammatory response|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|peptidyl-lysine deacetylation|positive regulation of cell migration involved in sprouting angiogenesis|regulation of skeletal muscle fiber development|transcription, DNA-dependent	cytoplasm|histone deacetylase complex|histone methyltransferase complex|transcription factor complex	histone deacetylase activity (H3-K16 specific)|histone deacetylase binding|histone deacetylase binding|NAD-dependent histone deacetylase activity (H3-K14 specific)|NAD-dependent histone deacetylase activity (H3-K9 specific)|NAD-dependent histone deacetylase activity (H4-K16 specific)|protein binding|protein kinase C binding|repressing transcription factor binding|transcription corepressor activity			lung(2)|central_nervous_system(2)|kidney(1)	5	all_lung(11;0.187)				Valproic Acid(DB00313)	ATTCAAGGTCGAAAAGCCAGC	0.448													9	21					0	0	0.008291	0	0
DNAH11	8701	broad.mit.edu	37	7	21747388	21747388	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:21747388A>C	uc003svc.2	+	41	6670	c.6639A>C	c.(6637-6639)AAA>AAC	p.K2213N		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2213	AAA 2 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						TAAACCCTAAAGCTGTGACAA	0.393									Kartagener_syndrome				7	31					0	0	0.001984	0	0
NUPL2	11097	broad.mit.edu	37	7	23236306	23236306	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:23236306C>T	uc003svu.2	+	5	789	c.530C>T	c.(529-531)TCT>TTT	p.S177F	NUPL2_uc003svv.2_RNA|NUPL2_uc003svw.2_Missense_Mutation_p.S54F|NUPL2_uc011jyw.1_RNA|NUPL2_uc003svx.2_Missense_Mutation_p.S54F|NUPL2_uc011jyx.1_5'UTR	NM_007342	NP_031368	O15504	NUPL2_HUMAN	nucleoporin like 2	177					carbohydrate metabolic process|glucose transport|mRNA transport|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear membrane|nuclear pore	nuclear export signal receptor activity|nucleic acid binding|zinc ion binding			skin(2)|ovary(1)	3						CAGCTAAATTCTGTCCAACGT	0.308													5	45					0	0	0.001168	0	0
STK31	56164	broad.mit.edu	37	7	23823225	23823225	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:23823225G>A	uc003sws.3	+	17	2158	c.2091G>A	c.(2089-2091)CAG>CAA	p.Q697Q	STK31_uc003swt.3_Silent_p.Q674Q|STK31_uc011jze.1_Silent_p.Q697Q|STK31_uc010kuq.2_Silent_p.Q674Q	NM_031414	NP_113602	Q9BXU1	STK31_HUMAN	serine/threonine kinase 31 isoform a	697							ATP binding|nucleic acid binding|protein serine/threonine kinase activity			skin(3)|lung(2)|ovary(2)|stomach(2)	9						GTTTGGCACAGAAATGGTTCC	0.348													16	89					0	0	0.008871	0	0
HOXA3	3200	broad.mit.edu	37	7	27149901	27149901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:27149901G>A	uc011jzl.1	-	2	559	c.359C>T	c.(358-360)CCG>CTG	p.P120L	HOXA3_uc011jzk.1_Intron|HOXA3_uc003syk.2_Missense_Mutation_p.P120L	NM_030661	NP_109377	O43365	HXA3_HUMAN	homeobox A3 isoform a	120	Pro-rich.				angiogenesis	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			breast(2)	2						AGAGggaggcgggggcgcggc	0.299													6	16					0	0	0.001168	0	0
SCRN1	9805	broad.mit.edu	37	7	29983621	29983621	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:29983621C>T	uc010kvp.2	-	3	720	c.516G>A	c.(514-516)GGG>GGA	p.G172G	SCRN1_uc011jzy.1_Silent_p.G104G|SCRN1_uc003tak.2_Silent_p.G172G|SCRN1_uc011jzz.1_Silent_p.G172G|SCRN1_uc011kaa.1_Silent_p.G192G|SCRN1_uc011jzw.1_Silent_p.G104G|SCRN1_uc011jzx.1_Intron	NM_001145515	NP_001138987	Q12765	SCRN1_HUMAN	secernin 1 isoform c	172					exocytosis|proteolysis	cytoplasm|nuclear membrane	dipeptidase activity			ovary(2)	2						CCCAGTACTTCCCTATGGTCT	0.527													13	90					0	0	0.003163	0	0
DPY19L2P1	554236	broad.mit.edu	37	7	35130006	35130006	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:35130006T>G	uc003teq.1	-	21	2286	c.1179A>C	c.(1177-1179)GAA>GAC	p.E393D	DPY19L2P1_uc003tep.1_RNA|DPY19L2P1_uc010kwz.1_RNA					RecName: Full=Protein dpy-19 homolog 2-like 2; AltName: Full=Dpy-19-like protein 2 pseudogene 2;												0						TCTCTCCTACTTCTTTGGCAG	0.299													9	112					0	0	0.006214	0	0
EEPD1	80820	broad.mit.edu	37	7	36194329	36194329	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:36194329C>T	uc003tfa.2	+	2	1036	c.396C>T	c.(394-396)CCC>CCT	p.P132P		NM_030636	NP_085139	Q7L9B9	EEPD1_HUMAN	endonuclease/exonuclease/phosphatase family	132					DNA repair		DNA binding				0						CAGCTGTGCCCCTCACCCCAC	0.652													8	27					0	0	0.003080	0	0
GPR141	353345	broad.mit.edu	37	7	37780105	37780105	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:37780105C>T	uc003tfm.1	+	1	110	c.110C>T	c.(109-111)TCC>TTC	p.S37F	uc003tfl.2_Intron	NM_181791	NP_861456	Q7Z602	GP141_HUMAN	G protein-coupled receptor 141	37	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(3)	3						GGTGTCATTTCCATTCTTTTC	0.498													13	65					0	0	0.013537	0	0
AMPH	273	broad.mit.edu	37	7	38424484	38424484	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:38424484G>A	uc003tgu.2	-	21	2092	c.2023C>T	c.(2023-2025)CAG>TAG	p.Q675*	AMPH_uc003tgv.2_Nonsense_Mutation_p.Q633*|AMPH_uc003tgt.2_Nonsense_Mutation_p.Q560*	NM_001635	NP_001626	P49418	AMPH_HUMAN	amphiphysin isoform 1	675	SH3.				endocytosis|synaptic transmission	actin cytoskeleton|cell junction|synaptic vesicle membrane				ovary(3)|liver(1)|skin(1)	5						TCTCTGTACTGAAGCCAGTCT	0.498													25	76					0	0	0.003330	0	0
Unknown	0	broad.mit.edu	37	7	39894080	39894080	+	RNA	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:39894080C>T	uc003thg.2	-	1		c.780G>A								full-length cDNA clone CS0DF025YB16 of Fetal brain of Homo sapiens (human).																		TTCCTTGTCTCAAATTCCAAG	0.358													13	31					0	0	0.006320	0	0
NPC1L1	29881	broad.mit.edu	37	7	44561362	44561362	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:44561362G>A	uc003tlb.2	-	12	2958	c.2902C>T	c.(2902-2904)CGC>TGC	p.R968C	NPC1L1_uc003tlc.2_Missense_Mutation_p.R968C|NPC1L1_uc011kbw.1_Missense_Mutation_p.R922C|NPC1L1_uc003tla.2_5'Flank	NM_013389	NP_037521	Q9UHC9	NPCL1_HUMAN	Niemann-Pick C1-like protein 1 isoform 1	968	Cytoplasmic (Potential).				cholesterol biosynthetic process|intestinal cholesterol absorption|lipoprotein metabolic process	apical plasma membrane|cytoplasmic vesicle membrane|integral to membrane	hedgehog receptor activity|protein binding			ovary(3)|central_nervous_system(1)|skin(1)	5					Ezetimibe(DB00973)	ATATAAAGGCGGCAGCAGGAG	0.597													6	60					0	0	0.001168	0	0
TBRG4	9238	broad.mit.edu	37	7	45143016	45143016	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:45143016G>A	uc003tmv.2	-	6	1218	c.1092C>T	c.(1090-1092)ATC>ATT	p.I364I	TBRG4_uc003tmu.2_Silent_p.I189I|TBRG4_uc003tmw.2_Silent_p.I254I|TBRG4_uc003tmx.2_Silent_p.I254I|TBRG4_uc011kcd.1_Silent_p.I375I	NM_004749	NP_004740	Q969Z0	TBRG4_HUMAN	cell cycle progression 2 protein isoform 1	364					apoptosis|cell cycle arrest|cellular respiration|G1 phase of mitotic cell cycle|positive regulation of cell proliferation	mitochondrion	ATP binding|protein binding|protein kinase activity				0						GGGGCAGGGTGATGTCCTGCG	0.582													3	10					0	0	0.004672	0	0
PKD1L1	168507	broad.mit.edu	37	7	47840287	47840287	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:47840287C>T	uc003tny.1	-	54	8153	c.8153G>A	c.(8152-8154)GGG>GAG	p.G2718E	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2718	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TAAAAGGATCCCAAAGTAACA	0.458													4	49					0	0	0.001984	0	0
PKD1L1	168507	broad.mit.edu	37	7	47847981	47847981	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:47847981G>A	uc003tny.1	-	52	7691	c.7691C>T	c.(7690-7692)TCC>TTC	p.S2564F	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2564	Helical; (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TCCAACCACGGAGAGCTGGAA	0.498													6	30					0	0	0.001984	0	0
PKD1L1	168507	broad.mit.edu	37	7	47894637	47894637	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:47894637C>T	uc003tny.1	-	30	4702	c.4702G>A	c.(4702-4704)GAT>AAT	p.D1568N		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1568	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						CTCCTATTATCCTGTCATCAC	0.363													12	38					0	0	0.002450	0	0
PKD1L1	168507	broad.mit.edu	37	7	47898329	47898329	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:47898329G>A	uc003tny.1	-	27	4304	c.4304C>T	c.(4303-4305)TCG>TTG	p.S1435L		NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	1435	Extracellular (Potential).|REJ.				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TTCCTCCTTCGAGTTTTCTTG	0.433													24	60					0	0	0.004656	0	0
ZPBP	11055	broad.mit.edu	37	7	50057911	50057911	+	Silent	SNP	A	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:50057911A>C	uc003tou.2	-	6	778	c.708T>G	c.(706-708)GTT>GTG	p.V236V	ZPBP_uc011kci.1_Silent_p.V162V|ZPBP_uc010kyw.2_Silent_p.V235V	NM_007009	NP_008940	Q9BS86	ZPBP1_HUMAN	zona pellucida binding protein isoform 1	236					binding of sperm to zona pellucida	extracellular region					0	Glioma(55;0.08)|all_neural(89;0.245)					CTAGAGATGAAACTGAGAAAA	0.303													4	43					0	0	0.009096	0	0
EGFR	1956	broad.mit.edu	37	7	55240685	55240685	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:55240685C>T	uc003tqk.2	+	17	2175	c.1929C>T	c.(1927-1929)ATC>ATT	p.I643I	EGFR_uc010kzg.1_Silent_p.I598I|EGFR_uc011kco.1_Silent_p.I590I	NM_005228	NP_005219	P00533	EGFR_HUMAN	epidermal growth factor receptor isoform a	643	Extracellular (Potential).				activation of phospholipase A2 activity by calcium-mediated signaling|activation of phospholipase C activity|axon guidance|cell proliferation|cell-cell adhesion|negative regulation of apoptosis|negative regulation of epidermal growth factor receptor signaling pathway|ossification|positive regulation of catenin import into nucleus|positive regulation of cell migration|positive regulation of cyclin-dependent protein kinase activity involved in G1/S|positive regulation of epithelial cell proliferation|positive regulation of MAP kinase activity|positive regulation of nitric oxide biosynthetic process|positive regulation of phosphorylation|positive regulation of protein kinase B signaling cascade|protein autophosphorylation|protein insertion into membrane|regulation of nitric-oxide synthase activity|regulation of peptidyl-tyrosine phosphorylation|response to stress|response to UV-A	basolateral plasma membrane|endoplasmic reticulum membrane|endosome|extracellular space|Golgi membrane|integral to membrane|nuclear membrane|Shc-EGFR complex	actin filament binding|ATP binding|double-stranded DNA binding|epidermal growth factor receptor activity|identical protein binding|MAP/ERK kinase kinase activity|protein heterodimerization activity|protein phosphatase binding|receptor signaling protein tyrosine kinase activity			lung(9213)|central_nervous_system(103)|stomach(41)|upper_aerodigestive_tract(39)|prostate(32)|ovary(31)|thyroid(24)|breast(11)|peritoneum(9)|oesophagus(9)|salivary_gland(9)|large_intestine(8)|kidney(8)|urinary_tract(6)|skin(5)|adrenal_gland(5)|soft_tissue(4)|bone(3)|NS(2)|pancreas(2)|haematopoietic_and_lymphoid_tissue(2)|thymus(2)|liver(2)|eye(1)	9571	all_cancers(1;1.57e-46)|all_epithelial(1;5.62e-37)|Lung NSC(1;9.29e-25)|all_lung(1;4.39e-23)|Esophageal squamous(2;7.55e-08)|Breast(14;0.0318)		GBM - Glioblastoma multiforme(1;0)|all cancers(1;2.19e-314)|Lung(13;4.65e-05)|LUSC - Lung squamous cell carcinoma(13;0.000168)|STAD - Stomach adenocarcinoma(5;0.00164)|Epithelial(13;0.0607)		Cetuximab(DB00002)|Erlotinib(DB00530)|Gefitinib(DB00317)|Lapatinib(DB01259)|Lidocaine(DB00281)|Panitumumab(DB01269)|Trastuzumab(DB00072)	GGCCTAAGATCCCGTCCATCG	0.607		8	A|O|Mis		glioma|NSCLC	NSCLC			Lung_Cancer_Familial_Clustering_of	TCGA GBM(3;<1E-08)|TSP Lung(4;<1E-08)			4	61					0	0	0.000602	0	0
ZNF107	51427	broad.mit.edu	37	7	64168626	64168626	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:64168626C>T	uc003ttd.2	+	7	2730	c.1944C>T	c.(1942-1944)TCC>TCT	p.S648S	ZNF107_uc003tte.2_Silent_p.S648S	NM_016220	NP_057304	Q9UII5	ZN107_HUMAN	zinc finger protein 107	648	C2H2-type 21.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Lung NSC(55;0.00948)|all_lung(88;0.0249)				TTAACTGCTCCTCAACCCTTA	0.378													5	17					0	0	0.000602	0	0
WBSCR17	64409	broad.mit.edu	37	7	70886089	70886089	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:70886089C>T	uc003tvy.2	+	5	960	c.960C>T	c.(958-960)ATC>ATT	p.I320I	WBSCR17_uc003tvz.2_Silent_p.I19I	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	320	Catalytic subdomain B.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CTCTCCCCATCAGGTCTGTGG	0.612													8	27					0	0	0.004482	0	0
MAGI2	9863	broad.mit.edu	37	7	78130895	78130895	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:78130895C>T	uc003ugx.2	-	5	1218	c.964G>A	c.(964-966)GAC>AAC	p.D322N	MAGI2_uc003ugy.2_Missense_Mutation_p.D322N|MAGI2_uc011kgr.1_Missense_Mutation_p.D154N|MAGI2_uc011kgs.1_Missense_Mutation_p.D159N	NM_012301	NP_036433	Q86UL8	MAGI2_HUMAN	membrane associated guanylate kinase, WW and PDZ	322	WW 1.|Interaction with DDN.					cell junction|synapse|synaptosome	phosphatase binding			ovary(5)|lung(4)|breast(1)|skin(1)	11		all_cancers(73;0.0064)|all_epithelial(88;0.087)|all_neural(109;0.0936)|Medulloblastoma(109;0.166)|Melanoma(862;0.236)				GAAACTCACTCAATGAAGTAG	0.383													15	67					0	0	0.004990	0	0
PCLO	27445	broad.mit.edu	37	7	82545510	82545510	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:82545510A>T	uc003uhx.2	-	7	12081	c.11792T>A	c.(11791-11793)GTG>GAG	p.V3931E	PCLO_uc003uhv.2_Missense_Mutation_p.V3931E|PCLO_uc010lec.2_Missense_Mutation_p.V896E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3862	Gln-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CATTGTTGCCACAGCTTGGAA	0.458													29	277					0	0	0.008361	0	0
PCLO	27445	broad.mit.edu	37	7	82582033	82582033	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:82582033C>T	uc003uhx.2	-	5	8525	c.8236G>A	c.(8236-8238)GAT>AAT	p.D2746N	PCLO_uc003uhv.2_Missense_Mutation_p.D2746N|PCLO_uc010lec.2_5'Flank	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	2677					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GCAGAAAGATCAATACATTTA	0.348													8	23					0	0	0.004482	0	0
PCLO	27445	broad.mit.edu	37	7	82585034	82585034	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:82585034C>T	uc003uhx.2	-	5	5524	c.5235G>A	c.(5233-5235)CCG>CCA	p.P1745P	PCLO_uc003uhv.2_Silent_p.P1745P	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1676					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTTGTGACTCGGGCTACTGT	0.488													10	141					0	0	0.008291	0	0
PCLO	27445	broad.mit.edu	37	7	82585486	82585486	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:82585486C>T	uc003uhx.2	-	5	5072	c.4783G>A	c.(4783-4785)GAA>AAA	p.E1595K	PCLO_uc003uhv.2_Missense_Mutation_p.E1595K	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1526					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						TTTGTTTCTTCCTTCTTCTGG	0.428													20	153					0	0	0.008871	0	0
PCLO	27445	broad.mit.edu	37	7	82585784	82585784	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:82585784C>T	uc003uhx.2	-	5	4774	c.4485G>A	c.(4483-4485)GAG>GAA	p.E1495E	PCLO_uc003uhv.2_Silent_p.E1495E	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	1426					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						ACTCAGACTTCTCTTTATGGT	0.368													7	40					0	0	0.001984	0	0
PCLO	27445	broad.mit.edu	37	7	82764634	82764634	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:82764634C>T	uc003uhx.2	-	3	2521	c.2232G>A	c.(2230-2232)CAG>CAA	p.Q744Q	PCLO_uc003uhv.2_Silent_p.Q744Q	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	690	Pro-rich.				cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						GGGCCTTGTCCTGCTCAGATG	0.517													6	50					0	0	0.001984	0	0
CROT	54677	broad.mit.edu	37	7	86978460	86978460	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:86978460C>T	uc003uit.2	+	3	321	c.76C>T	c.(76-78)CCT>TCT	p.P26S	CROT_uc003uis.3_Missense_Mutation_p.P26S|CROT_uc003uiu.2_Missense_Mutation_p.P26S	NM_021151	NP_066974	Q9UKG9	OCTC_HUMAN	peroxisomal carnitine O-octanoyltransferase	26					fatty acid beta-oxidation using acyl-CoA oxidase|generation of precursor metabolites and energy|transport	peroxisomal matrix	carnitine O-octanoyltransferase activity			ovary(2)|lung(1)	3	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)				L-Carnitine(DB00583)	ACTGCCTGTTCCTTCACTTGA	0.294													7	68					0	0	0.003080	0	0
ADAM22	53616	broad.mit.edu	37	7	87774728	87774728	+	Splice_Site	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:87774728A>G	uc003ujn.2	+	17	1472	c.1393_splice	c.e17-2	p.E465_splice	ADAM22_uc003ujk.1_Splice_Site_p.E465_splice|ADAM22_uc003ujl.1_Splice_Site_p.E465_splice|ADAM22_uc003ujm.2_Splice_Site_p.E465_splice|ADAM22_uc003ujo.2_Splice_Site_p.E465_splice|ADAM22_uc003ujp.1_Splice_Site_p.E517_splice	NM_021723	NP_068369	Q9P0K1	ADA22_HUMAN	ADAM metallopeptidase domain 22 isoform 1						cell adhesion|central nervous system development|negative regulation of cell adhesion|proteolysis	integral to membrane	integrin binding|metalloendopeptidase activity|protein binding|receptor activity|zinc ion binding			ovary(4)|skin(2)|lung(1)|kidney(1)	8	Esophageal squamous(14;0.00202)		STAD - Stomach adenocarcinoma(171;0.215)			TATATTCCTTAGGAATGTGTC	0.343													7	53					0	0	0.001984	0	0
STEAP2	261729	broad.mit.edu	37	7	89856353	89856353	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:89856353C>T	uc003ujz.2	+	3	954	c.561C>T	c.(559-561)TTC>TTT	p.F187F	STEAP2_uc003ujy.2_Silent_p.F229F|STEAP2_uc010len.2_Silent_p.F187F|STEAP2_uc003uka.2_Silent_p.F187F|STEAP2_uc003ukb.2_Silent_p.F187F|STEAP2_uc003ukc.2_Silent_p.F187F|STEAP2_uc003ukd.2_Silent_p.F187F	NM_152999	NP_694544	Q8NFT2	STEA2_HUMAN	six transmembrane epithelial antigen of the	187					electron transport chain|endocytosis|Golgi to plasma membrane transport|ion transport|iron ion homeostasis|regulated secretory pathway|response to hormone stimulus	cytosol|early endosome|endosome membrane|integral to Golgi membrane|plasma membrane|trans-Golgi network transport vesicle|vesicular fraction	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding|oxidoreductase activity|transporter activity			ovary(2)	2	all_hematologic(106;0.112)					AGTTGAATTTCATTCCCATTG	0.423													12	68					0	0	0.002450	0	0
AKAP9	10142	broad.mit.edu	37	7	91646386	91646386	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:91646386A>T	uc003ulg.2	+	12	4032	c.3807A>T	c.(3805-3807)AAA>AAT	p.K1269N	AKAP9_uc003ule.2_Missense_Mutation_p.K1281N|AKAP9_uc003ulf.2_Missense_Mutation_p.K1269N|AKAP9_uc003uli.2_Missense_Mutation_p.K894N	NM_005751	NP_005742	Q99996	AKAP9_HUMAN	A-kinase anchor protein 9 isoform 2	1281					G2/M transition of mitotic cell cycle|signal transduction|synaptic transmission|transport	centrosome|cytosol|Golgi apparatus	receptor binding			breast(7)|ovary(6)|lung(5)|skin(3)|large_intestine(2)|prostate(2)|central_nervous_system(1)	26	all_cancers(62;2.46e-09)|all_epithelial(64;4.42e-08)|Breast(17;0.00206)|all_lung(186;0.185)|all_hematologic(106;0.215)|Lung NSC(181;0.249)		STAD - Stomach adenocarcinoma(171;6.16e-05)|Lung(22;0.123)|LUSC - Lung squamous cell carcinoma(200;0.225)			AATACAACAAACTCTTGGTAC	0.313			T	BRAF	papillary thyroid								4	8					0	0	0.009096	0	0
SAMD9L	219285	broad.mit.edu	37	7	92763163	92763163	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:92763163C>T	uc003umh.1	-	5	3338	c.2122G>A	c.(2122-2124)GAT>AAT	p.D708N	SAMD9L_uc003umj.1_Missense_Mutation_p.D708N|SAMD9L_uc003umi.1_Missense_Mutation_p.D708N|SAMD9L_uc010lfb.1_Missense_Mutation_p.D708N|SAMD9L_uc003umk.1_Missense_Mutation_p.D708N|SAMD9L_uc010lfc.1_Missense_Mutation_p.D708N|SAMD9L_uc010lfd.1_Missense_Mutation_p.D708N|SAMD9L_uc011khx.1_Intron	NM_152703	NP_689916	Q8IVG5	SAM9L_HUMAN	sterile alpha motif domain containing 9-like	708										ovary(4)	4	all_cancers(62;4.15e-11)|all_epithelial(64;2.29e-10)|Breast(17;0.000675)|Lung NSC(181;0.0755)|all_lung(186;0.0989)		STAD - Stomach adenocarcinoma(171;0.000302)			TTAACAAAATCTGAAGAATAG	0.323													14	36					0	0	0.001855	0	0
PPP1R9A	55607	broad.mit.edu	37	7	94539924	94539924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:94539924G>A	uc003unp.2	+	2	781	c.499G>A	c.(499-501)GGA>AGA	p.G167R	PPP1R9A_uc010lfj.2_Missense_Mutation_p.G167R|PPP1R9A_uc011kif.1_Missense_Mutation_p.G167R|PPP1R9A_uc003unq.2_Missense_Mutation_p.G167R|PPP1R9A_uc011kig.1_Missense_Mutation_p.G167R	NM_017650	NP_060120	Q9ULJ8	NEB1_HUMAN	protein phosphatase 1, regulatory (inhibitor)	167						cell junction|synapse|synaptosome	actin binding			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	4	all_cancers(62;9.12e-11)|all_epithelial(64;4.34e-09)		STAD - Stomach adenocarcinoma(171;0.0031)			AGAGAAAGCTGGAGGGAGTGA	0.498										HNSCC(28;0.073)			11	52					0	0	0.010729	0	0
ZKSCAN5	23660	broad.mit.edu	37	7	99117471	99117471	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:99117471C>T	uc003uqv.2	+	4	699	c.575C>T	c.(574-576)CCT>CTT	p.P192L	ZKSCAN5_uc010lfx.2_Missense_Mutation_p.P192L|ZKSCAN5_uc003uqw.2_Missense_Mutation_p.P192L|ZKSCAN5_uc003uqx.2_Intron|ZKSCAN5_uc003uqy.2_5'UTR	NM_145102	NP_659570	Q9Y2L8	ZKSC5_HUMAN	zinc finger with KRAB and SCAN domains 5	192					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1	all_cancers(62;2.54e-08)|all_epithelial(64;2.55e-09)|Lung NSC(181;0.0053)|all_lung(186;0.00895)|Esophageal squamous(72;0.0166)					CTCCAAGTTCCTTCCCTTCCC	0.532													13	65					0	0	0.006122	0	0
GPC2	221914	broad.mit.edu	37	7	99773357	99773357	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:99773357G>A	uc003utv.2	-	3	654	c.486C>T	c.(484-486)ACC>ACT	p.T162T	GPC2_uc010lgr.2_RNA|GPC2_uc003utw.1_Silent_p.T162T|STAG3_uc010lgs.1_5'Flank|STAG3_uc003utx.1_5'Flank|STAG3_uc011kjk.1_5'Flank	NM_152742	NP_689955	Q8N158	GPC2_HUMAN	glypican 2 precursor	162						anchored to membrane|endoplasmic reticulum|extracellular space|plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			breast(1)|pancreas(1)	2	Lung NSC(181;0.0181)|all_lung(186;0.0284)|Esophageal squamous(72;0.0439)					AATCCGCCAGGGTGTCATCCA	0.602													13	45					0	0	0.002450	0	0
ZAN	7455	broad.mit.edu	37	7	100350464	100350464	+	Silent	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:100350464A>G	uc003uwj.2	+	14	2901	c.2736A>G	c.(2734-2736)AAA>AAG	p.K912K	ZAN_uc003uwk.2_Silent_p.K912K|ZAN_uc003uwl.2_RNA|ZAN_uc010lhh.2_RNA|ZAN_uc010lhi.2_RNA	NM_003386	NP_003377	Q9Y493	ZAN_HUMAN	zonadhesin isoform 3	912	66 X heptapeptide repeats (approximate) (mucin-like domain).|Extracellular (Potential).				binding of sperm to zona pellucida|cell-cell adhesion	integral to membrane|plasma membrane				ovary(4)|large_intestine(3)|central_nervous_system(2)|pancreas(2)	11	Lung NSC(181;0.041)|all_lung(186;0.0581)		STAD - Stomach adenocarcinoma(171;0.19)			CCCCAGAAAAACCCACCATCT	0.517													9	39					0	0	0.004482	0	0
MUC17	140453	broad.mit.edu	37	7	100686258	100686258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:100686258C>T	uc003uxp.1	+	3	11614	c.11561C>T	c.(11560-11562)TCA>TTA	p.S3854L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3854	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					AAAGCCGGTTCATTCTCCATA	0.468													14	58					0	0	0.001855	0	0
SERPINE1	5054	broad.mit.edu	37	7	100771851	100771851	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:100771851C>T	uc003uxt.2	+	2	325	c.177C>T	c.(175-177)CCC>CCT	p.P59P	SERPINE1_uc011kkj.1_Silent_p.P44P|SERPINE1_uc003uxu.1_5'Flank	NM_000602	NP_000593	P05121	PAI1_HUMAN	plasminogen activator inhibitor-1 isoform 1	59					angiogenesis|cellular response to chemical stimulus|cellular response to lipopolysaccharide|chronological cell aging|defense response to Gram-negative bacterium|fibrinolysis|negative regulation of apoptosis|negative regulation of cell adhesion mediated by integrin|negative regulation of fibrinolysis|negative regulation of plasminogen activation|negative regulation of smooth muscle cell migration|negative regulation of smooth muscle cell-matrix adhesion|negative regulation of vascular wound healing|platelet activation|platelet degranulation|positive regulation of angiogenesis|positive regulation of interleukin-8 production|positive regulation of leukotriene production involved in inflammatory response|positive regulation of monocyte chemotaxis|positive regulation of receptor-mediated endocytosis|regulation of receptor activity	extracellular matrix|extracellular space|plasma membrane|platelet alpha granule lumen	protease binding|serine-type endopeptidase inhibitor activity			ovary(1)|lung(1)|central_nervous_system(1)	3	Lung NSC(181;0.136)|all_lung(186;0.182)				Atorvastatin(DB01076)|Dimethyl sulfoxide(DB01093)|Drotrecogin alfa(DB00055)|Simvastatin(DB00641)|Tenecteplase(DB00031)|Troglitazone(DB00197)|Urokinase(DB00013)	TTTTCTCACCCTATGGGGTGG	0.587													8	36					0	0	0.004482	0	0
MOGAT3	346606	broad.mit.edu	37	7	100839531	100839531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:100839531G>A	uc003uyc.2	-	6	975	c.808C>T	c.(808-810)CGC>TGC	p.R270C	MOGAT3_uc010lhr.2_Intron	NM_178176	NP_835470	Q86VF5	MOGT3_HUMAN	monoacylglycerol O-acyltransferase 3	270					glycerol metabolic process|lipid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	2-acylglycerol O-acyltransferase activity|diacylglycerol O-acyltransferase activity			ovary(2)	2	Lung NSC(181;0.168)|all_lung(186;0.215)					AAGAGACCGCGACCCCAGAAG	0.607													3	14					0	0	0.004672	0	0
CUX1	1523	broad.mit.edu	37	7	101918629	101918629	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:101918629C>T	uc003uyt.2	+	17	1581	c.1562C>T	c.(1561-1563)GCC>GTC	p.A521V	CUX1_uc011kkn.1_Missense_Mutation_p.A482V|CUX1_uc003uyw.2_Missense_Mutation_p.A475V|CUX1_uc003uyv.2_Missense_Mutation_p.A505V|CUX1_uc003uyu.2_Missense_Mutation_p.A519V|CUX1_uc003uyz.2_RNA	NM_001913	NP_001904	P39880	CUX1_HUMAN	cut-like homeobox 1 isoform b	333	Potential.				negative regulation of transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8						GAGCTTGAGGCCGTGAGTCAC	0.602													10	27					0	0	0.006214	0	0
PIK3CG	5294	broad.mit.edu	37	7	106508112	106508112	+	Missense_Mutation	SNP	G	A	A	rs142342118		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:106508112G>A	uc003vdv.3	+	2	191	c.106G>A	c.(106-108)GAG>AAG	p.E36K	PIK3CG_uc003vdu.2_Missense_Mutation_p.E36K|PIK3CG_uc003vdw.2_Missense_Mutation_p.E36K	NM_002649	NP_002640	P48736	PK3CG_HUMAN	phosphoinositide-3-kinase, catalytic, gamma	36					G-protein coupled receptor protein signaling pathway|phosphatidylinositol-mediated signaling|platelet activation	phosphatidylinositol 3-kinase complex	1-phosphatidylinositol-3-kinase activity|ATP binding|phosphatidylinositol-4,5-bisphosphate 3-kinase activity|protein binding			lung(16)|central_nervous_system(8)|breast(5)|pancreas(3)|stomach(2)|ovary(2)|upper_aerodigestive_tract(1)|skin(1)	38						GTCCTCCATGGAGCTCATCCC	0.647													16	53					0	0	0.007413	0	0
CFTR	1080	broad.mit.edu	37	7	117232194	117232194	+	Missense_Mutation	SNP	G	A	A	rs121908780		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:117232194G>A	uc003vjd.2	+	14	2105	c.1973G>A	c.(1972-1974)AGA>AAA	p.R658K	CFTR_uc011knq.1_Missense_Mutation_p.R64K	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	658	Cytoplasmic (Potential).				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	GCAGAAAGAAGAAATTCAATC	0.373									Cystic_Fibrosis				6	32					0	0	0.001168	0	0
TSPAN12	23554	broad.mit.edu	37	7	120428845	120428845	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:120428845A>G	uc003vjk.2	-	8	1093	c.719T>C	c.(718-720)CTC>CCC	p.L240P	TSPAN12_uc010lkj.2_Missense_Mutation_p.L113P	NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	240	Helical; (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					AGTAATGGTGAGAATCATGGC	0.468													7	67					0	0	0.001984	0	0
GCC1	79571	broad.mit.edu	37	7	127224625	127224625	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:127224625C>T	uc003vma.2	-	1	1030	c.612G>A	c.(610-612)GCG>GCA	p.A204A		NM_024523	NP_078799	Q96CN9	GCC1_HUMAN	Golgi coiled-coil protein 1	204	Potential.					Golgi membrane|plasma membrane	protein binding			ovary(2)	2						TCTCCTCCTCCGCCTTGTTAC	0.547											OREG0003809	type=REGULATORY REGION|Gene=GCC1|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	22	103					0	0	0.012319	0	0
AHCYL2	23382	broad.mit.edu	37	7	129046260	129046260	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:129046260C>T	uc011kov.1	+	10	1302	c.1248C>T	c.(1246-1248)TCC>TCT	p.S416S	AHCYL2_uc003vot.2_Silent_p.S415S|AHCYL2_uc003vov.2_Silent_p.S313S|AHCYL2_uc011kow.1_Silent_p.S314S|AHCYL2_uc011kox.1_Silent_p.S313S	NM_015328	NP_056143	Q96HN2	SAHH3_HUMAN	S-adenosylhomocysteine hydrolase-like 2 isoform	416					one-carbon metabolic process		adenosylhomocysteinase activity			ovary(2)	2						CCATGGGCTCCATTGTGTATG	0.493													21	71					0	0	0.002780	0	0
PLXNA4	91584	broad.mit.edu	37	7	131825483	131825483	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:131825483G>A	uc003vra.3	-	30	5542	c.5313C>T	c.(5311-5313)CTC>CTT	p.L1771L	PLXNA4_uc003vqz.3_Silent_p.L56L	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	1771	Cytoplasmic (Potential).					integral to membrane|intracellular|plasma membrane				ovary(1)	1						CCACCACAGAGAGGCAGGCGT	0.557													10	93					0	0	0.006214	0	0
PLXNA4	91584	broad.mit.edu	37	7	132192880	132192880	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:132192880C>T	uc003vra.3	-	2	802	c.573G>A	c.(571-573)GGG>GGA	p.G191G	PLXNA4_uc003vrc.2_Silent_p.G191G|PLXNA4_uc003vrb.2_Silent_p.G191G	NM_020911	NP_065962	Q9HCM2	PLXA4_HUMAN	plexin A4 isoform 1	191	Extracellular (Potential).|Sema.					integral to membrane|intracellular|plasma membrane				ovary(1)	1						ACTCGGGCTTCCCATCCACTG	0.537													11	81					0	0	0.008291	0	0
UBN2	254048	broad.mit.edu	37	7	138968105	138968105	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:138968105C>T	uc011kqr.1	+	15	2454	c.2454C>T	c.(2452-2454)CCC>CCT	p.P818P		NM_173569	NP_775840	Q6ZU65	UBN2_HUMAN	ubinuclein 2	818										ovary(1)|skin(1)	2						TAGCTACTCCCAAAAAACTAG	0.448													16	41					0	0	0.003163	0	0
RAB19	401409	broad.mit.edu	37	7	140107535	140107535	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:140107535A>G	uc010lni.2	+	2	287	c.89A>G	c.(88-90)AAG>AGG	p.K30R	RAB19_uc011krc.1_Missense_Mutation_p.K30R	NM_001008749	NP_001008749	A4D1S5	RAB19_HUMAN	RAB19, member RAS oncogene family	30	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	plasma membrane	GTP binding				0	Melanoma(164;0.0142)					AATGTGGGGAAGACGTGTGTG	0.493													10	51					0	0	0.008291	0	0
MGAM	8972	broad.mit.edu	37	7	141708471	141708471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:141708471G>A	uc003vwy.2	+	3	347	c.293G>A	c.(292-294)CGA>CAA	p.R98Q		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	98	P-type 1.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GAATTGGAACGAATTAATTGC	0.403													4	50					0	0	0.009096	0	0
MGAM	8972	broad.mit.edu	37	7	141721462	141721462	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:141721462C>T	uc003vwy.2	+	6	689	c.635C>T	c.(634-636)TCT>TTT	p.S212F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	212	Lumenal (Potential).|Maltase.				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	GCTGCTGCTTCTTTGACCTAC	0.433													9	61					0	0	0.006214	0	0
TRPV5	56302	broad.mit.edu	37	7	142625268	142625268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:142625268G>A	uc003wby.1	-	7	1088	c.824C>T	c.(823-825)TCC>TTC	p.S275F	TRPV5_uc003wbz.2_Missense_Mutation_p.S275F	NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	275	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					GTAGAGAATGGAGGTCAGGGG	0.567													7	76					0	0	0.001984	0	0
OR2F2	135948	broad.mit.edu	37	7	143632903	143632903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:143632903C>T	uc011ktv.1	+	1	578	c.578C>T	c.(577-579)TCC>TTC	p.S193F		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	193	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					GTGGACACCTCCTCCAATGAG	0.488													15	49					0	0	0.004007	0	0
OR6B1	135946	broad.mit.edu	37	7	143701836	143701836	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:143701836C>T	uc003wdt.1	+	1	747	c.747C>T	c.(745-747)TTC>TTT	p.F249F		NM_001005281	NP_001005281	O95007	OR6B1_HUMAN	olfactory receptor, family 6, subfamily B,	249	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	Melanoma(164;0.0783)					TCACCATTTTCTATTCAGCCA	0.443													19	80					0	0	0.007413	0	0
OR2A5	393046	broad.mit.edu	37	7	143748185	143748186	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:143748185_143748186GG>AA	uc011ktw.1	+	1	691_692	c.691_692GG>AA	c.(691-693)GGG>AAG	p.G231K		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	231	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					GATCCAGTCTGGGGAGGGCCGC	0.604													26	90					0	0	0.004672	0	0
OR2A5	393046	broad.mit.edu	37	7	143748223	143748223	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:143748223C>T	uc011ktw.1	+	1	729	c.729C>T	c.(727-729)TCC>TCT	p.S243S		NM_012365	NP_036497	Q96R48	OR2A5_HUMAN	olfactory receptor, family 2, subfamily A,	243	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Melanoma(164;0.0783)					CCTGCTCCTCCCACCTTTGCA	0.617													20	84					0	0	0.014323	0	0
NOBOX	135935	broad.mit.edu	37	7	144098647	144098647	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:144098647C>T	uc011kue.1	-	4	336	c.336G>A	c.(334-336)GAG>GAA	p.E112E		NM_001080413	NP_001073882	O60393	NOBOX_HUMAN	NOBOX oogenesis homeobox	112					cell differentiation|oogenesis	nucleus	sequence-specific DNA binding			ovary(1)	1	Melanoma(164;0.14)					GCAGTTCCTCCTCCCCGGGTC	0.617													8	47					0	0	0.003080	0	0
ZNF212	7988	broad.mit.edu	37	7	148947455	148947455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:148947455C>T	uc003wfp.2	+	2	326	c.230C>T	c.(229-231)GCT>GTT	p.A77V		NM_012256	NP_036388	Q9UDV6	ZN212_HUMAN	zinc finger protein 212	77					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|identical protein binding|zinc ion binding			ovary(1)	1	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)			AAGAAGCTGGCTGACTGCGAG	0.652													12	63					0	0	0.013537	0	0
GIMAP8	155038	broad.mit.edu	37	7	150174533	150174533	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:150174533G>A	uc003whj.2	+	5	1993	c.1663G>A	c.(1663-1665)GAC>AAC	p.D555N		NM_175571	NP_783161	Q8ND71	GIMA8_HUMAN	GTPase, IMAP family member 8	555						endoplasmic reticulum|Golgi apparatus|mitochondrion	GTP binding			skin(3)|ovary(2)|breast(1)|central_nervous_system(1)	7			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.17)		CTTTGGAGCAGACTTTACGAA	0.483													4	69					0	0	0.001168	0	0
GIMAP7	168537	broad.mit.edu	37	7	150217792	150217792	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:150217792G>A	uc003whk.2	+	2	860	c.730G>A	c.(730-732)GAA>AAA	p.E244K		NM_153236	NP_694968	Q8NHV1	GIMA7_HUMAN	GTPase, IMAP family member 7	244							GTP binding			pancreas(1)|skin(1)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0218)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		TAAATCAGAGGAAGAAAAGGA	0.264													4	19					0	0	0.000602	0	0
NOS3	4846	broad.mit.edu	37	7	150698495	150698495	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:150698495C>T	uc003wif.2	+	11	1706	c.1410C>T	c.(1408-1410)TCC>TCT	p.S470S	NOS3_uc011kuy.1_Silent_p.S264S|NOS3_uc011kuz.1_Silent_p.S470S|NOS3_uc011kva.1_Silent_p.S470S|NOS3_uc011kvb.1_Silent_p.S470S	NM_000603	NP_000594	P29474	NOS3_HUMAN	nitric oxide synthase 3 isoform 1	470	Interaction with NOSIP.				anti-apoptosis|arginine catabolic process|blood vessel remodeling|endothelial cell migration|mitochondrion organization|negative regulation of muscle hyperplasia|negative regulation of platelet activation|nitric oxide biosynthetic process|platelet activation|positive regulation of angiogenesis|positive regulation of guanylate cyclase activity|positive regulation of vasodilation|regulation of blood vessel size|regulation of nitric-oxide synthase activity|regulation of systemic arterial blood pressure by endothelin|response to fluid shear stress|response to heat|smooth muscle hyperplasia	caveola|cytoskeleton|cytosol|Golgi membrane	actin monomer binding|arginine binding|cadmium ion binding|calmodulin binding|flavin adenine dinucleotide binding|FMN binding|heme binding|NADP binding|nitric-oxide synthase activity|tetrahydrobiopterin binding			central_nervous_system(5)|large_intestine(2)|skin(1)	8	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	L-Arginine(DB00125)|L-Citrulline(DB00155)|Rosuvastatin(DB01098)|Tetrahydrobiopterin(DB00360)	ATTTCCTGTCCCCGGCCTTCC	0.617													7	46					0	0	0.004482	0	0
MLL3	58508	broad.mit.edu	37	7	151945055	151945055	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr7:151945055T>C	uc003wla.2	-	14	2683	c.2464A>G	c.(2464-2466)AAA>GAA	p.K822E		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	822					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		ATGCCAATTTTTGGAGTGACT	0.413			N		medulloblastoma								6	242					0	0	0.003080	0	0
CSMD1	64478	broad.mit.edu	37	8	2857554	2857554	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:2857554A>G	uc011kwk.1	-	53	8522	c.8132T>C	c.(8131-8133)TTC>TCC	p.F2711S	CSMD1_uc011kwj.1_Missense_Mutation_p.F2040S|CSMD1_uc010lrg.2_Missense_Mutation_p.F721S	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2711	Extracellular (Potential).|Sushi 18.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		CACAAGCCGGAAACCAGGATT	0.532													9	69					0	0	0.004482	0	0
TNKS	8658	broad.mit.edu	37	8	9565929	9565929	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:9565929T>C	uc003wss.2	+	9	1510	c.1505T>C	c.(1504-1506)TTA>TCA	p.L502S	TNKS_uc011kwv.1_Missense_Mutation_p.L502S|TNKS_uc011kww.1_Missense_Mutation_p.L265S	NM_003747	NP_003738	O95271	TNKS1_HUMAN	tankyrase, TRF1-interacting ankyrin-related	502					mitotic spindle organization|mRNA transport|negative regulation of DNA binding|peptidyl-serine phosphorylation|peptidyl-threonine phosphorylation|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of telomere maintenance via telomerase|protein auto-ADP-ribosylation|protein localization to chromosome, telomeric region|protein poly-ADP-ribosylation|protein polyubiquitination|protein transport|spindle assembly|transmembrane transport|Wnt receptor signaling pathway	chromosome, centromeric region|Golgi membrane|microsome|nuclear chromosome, telomeric region|nuclear membrane|nuclear pore|pericentriolar material	NAD+ ADP-ribosyltransferase activity|protein binding|zinc ion binding			lung(4)|ovary(2)|kidney(1)	7				COAD - Colon adenocarcinoma(149;0.0467)		GAAGCAGACTTAGCTAAAGTT	0.318													6	62					0	0	0.001984	0	0
AMAC1L2	83650	broad.mit.edu	37	8	11188858	11188858	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:11188858C>T	uc003wtp.1	+	1	364	c.243C>T	c.(241-243)CTC>CTT	p.L81L		NM_054028	NP_473369	Q96KT7	AMCL2_HUMAN	acyl-malonyl condensing enzyme	81	DUF6 1.|Helical; (Potential).					integral to membrane					0			STAD - Stomach adenocarcinoma(15;0.00676)	COAD - Colon adenocarcinoma(149;0.0563)		TCTTCCACCTCCCTATTGCCC	0.617													28	148					0	0	0.010818	0	0
USP17L2	377630	broad.mit.edu	37	8	11996013	11996013	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:11996013C>T	uc003wvc.1	-	1	257	c.257G>A	c.(256-258)GGA>GAA	p.G86E	FAM66D_uc011kxp.1_Intron|FAM66D_uc011kxo.1_Intron	NM_201402	NP_958804	Q6R6M4	U17L2_HUMAN	deubiquitinating enzyme 3	86					apoptosis|cell cycle|G2/M transition checkpoint|mitotic cell cycle G1/S transition checkpoint|protein deubiquitination|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin thiolesterase activity|ubiquitin-specific protease activity			skin(2)|upper_aerodigestive_tract(1)	3						GCAGGTATTTCCCATATTCTG	0.567													5	67					0	0	0.001168	0	0
TNFRSF10C	8794	broad.mit.edu	37	8	22972261	22972261	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:22972261C>T	uc003xcy.2	+	3	459	c.258C>T	c.(256-258)TTC>TTT	p.F86F	TNFRSF10C_uc011kzr.1_RNA	NM_003841	NP_003832	O14798	TR10C_HUMAN	tumor necrosis factor receptor superfamily,	86	TNFR-Cys 2.				apoptosis	anchored to membrane|integral to plasma membrane	TRAIL binding|transmembrane receptor activity				0		Prostate(55;0.0421)|Breast(100;0.067)		Colorectal(74;0.0147)|COAD - Colon adenocarcinoma(73;0.0612)		CTTCTTGCTTCCCATGTACAG	0.502													8	63					0	0	0.004482	0	0
ADAM28	10863	broad.mit.edu	37	8	24199165	24199165	+	Nonsense_Mutation	SNP	G	A	A	rs141747646		TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:24199165G>A	uc003xdy.2	+	16	1808	c.1725G>A	c.(1723-1725)TGG>TGA	p.W575*	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Nonsense_Mutation_p.W262*	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	575	Extracellular (Potential).|Cys-rich.				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		ATTTGCCCTGGAAAGGACGGA	0.423													15	130					0	0	0.003163	0	0
C8orf80	389643	broad.mit.edu	37	8	27888814	27888814	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:27888814C>T	uc003xgm.3	-	15	1997	c.1854G>A	c.(1852-1854)GGG>GGA	p.G618G		NM_001010906	NP_001010906	Q68CJ6	SLIP_HUMAN	speckled-like pattern in the germinal center	618						nucleus	GTP binding|GTPase activity			ovary(1)|central_nervous_system(1)	2		Ovarian(32;0.0218)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0228)|KIRC - Kidney renal clear cell carcinoma(542;0.126)|Kidney(114;0.15)|Colorectal(74;0.181)		CACTTCTTATCCCAATTTCTG	0.463													17	75					0	0	0.004007	0	0
KIF13B	23303	broad.mit.edu	37	8	29043814	29043814	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:29043814G>A	uc003xhh.3	-	6	551	c.492C>T	c.(490-492)CCC>CCT	p.P164P	KIF13B_uc003xhj.2_Silent_p.P61P|KIF13B_uc010lvf.1_Silent_p.P100P	NM_015254	NP_056069	Q9NQT8	KI13B_HUMAN	kinesin family member 13B	164	Kinesin-motor.				microtubule-based movement|protein targeting|signal transduction|T cell activation	cytoplasm|microtubule	ATP binding|microtubule motor activity|protein kinase binding				0		Ovarian(32;0.000536)		KIRC - Kidney renal clear cell carcinoma(542;0.152)|Kidney(114;0.181)		TTTACCCTTTGGGATCAAGAA	0.313													28	106					0	0	0.009535	0	0
PURG	29942	broad.mit.edu	37	8	30889602	30889602	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:30889602G>A	uc003xin.2	-	1	716	c.697C>T	c.(697-699)CGT>TGT	p.R233C	WRN_uc003xio.3_5'Flank|PURG_uc003xim.1_Missense_Mutation_p.R233C	NM_013357	NP_037489	Q9UJV8	PURG_HUMAN	purine-rich element binding protein G isoform A	233	By similarity.					nucleus	DNA binding				0				KIRC - Kidney renal clear cell carcinoma(542;0.0895)|Kidney(114;0.108)		AAGGCATCACGAAACTCAATC	0.498													13	51					0	0	0.003163	0	0
RNF122	79845	broad.mit.edu	37	8	33416159	33416159	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:33416159G>A	uc003xjo.1	-	2	558	c.156C>T	c.(154-156)AGC>AGT	p.S52S		NM_024787	NP_079063	Q9H9V4	RN122_HUMAN	ring finger protein 122	52	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane	zinc ion binding				0				KIRC - Kidney renal clear cell carcinoma(67;0.0966)|Kidney(114;0.116)		AGAAGATAAGGCTGAGCATGA	0.547													4	18					0	0	0.009096	0	0
KCNU1	157855	broad.mit.edu	37	8	36766833	36766833	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:36766833G>A	uc010lvw.2	+	21	2198	c.2111G>A	c.(2110-2112)CGA>CAA	p.R704Q	KCNU1_uc003xjw.2_RNA	NM_001031836	NP_001027006	A8MYU2	KCNU1_HUMAN	potassium channel, subfamily U, member 1	704	Cytoplasmic (Potential).					voltage-gated potassium channel complex	binding|large conductance calcium-activated potassium channel activity|voltage-gated potassium channel activity			ovary(1)	1				KIRC - Kidney renal clear cell carcinoma(67;0.0504)|Kidney(114;0.0634)		CCTTAGAAACGAACTGGCAAG	0.468													20	127					0	0	0.012319	0	0
BAG4	9530	broad.mit.edu	37	8	38067591	38067591	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:38067591C>T	uc003xky.1	+	5	1236	c.954C>T	c.(952-954)GTC>GTT	p.V318V	BAG4_uc003xkz.1_Silent_p.V282V	NM_004874	NP_004865	O95429	BAG4_HUMAN	BCL2-associated athanogene 4	318					anti-apoptosis|apoptosis|protein folding	cytoplasm|nucleus	receptor signaling protein activity			ovary(1)	1	Colorectal(12;0.000442)	all_lung(54;0.00787)|Lung NSC(58;0.0295)|Hepatocellular(245;0.121)				CTTGCAGTGTCCATCAGTACG	0.463													12	71					0	0	0.013537	0	0
ADAM18	8749	broad.mit.edu	37	8	39537695	39537695	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:39537695G>A	uc003xni.2	+	16	1771	c.1771G>A	c.(1771-1773)GGA>AGA	p.G591R	ADAM18_uc010lww.2_RNA|ADAM18_uc010lwx.2_Missense_Mutation_p.G567R	NM_014237	NP_055052	Q9Y3Q7	ADA18_HUMAN	a disintegrin and metalloprotease domain 18	591	Cys-rich.|Extracellular (Potential).				cell differentiation|multicellular organismal development|proteolysis|spermatogenesis	integral to membrane|membrane fraction	metalloendopeptidase activity|zinc ion binding			central_nervous_system(2)|upper_aerodigestive_tract(1)|ovary(1)|kidney(1)|skin(1)	6		all_cancers(7;1.32e-05)|all_epithelial(6;3.08e-10)|all_lung(54;0.00187)|Hepatocellular(245;0.00745)|Lung NSC(58;0.00769)|Breast(189;0.0112)	LUSC - Lung squamous cell carcinoma(45;0.000199)			GAGATCAGATGGAACAGACAA	0.353													6	15					0	0	0.001168	0	0
ADAM2	2515	broad.mit.edu	37	8	39634660	39634660	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:39634660C>T	uc003xnj.2	-	11	987	c.912G>A	c.(910-912)CTG>CTA	p.L304L	ADAM2_uc003xnk.2_Silent_p.L285L|ADAM2_uc011lck.1_Silent_p.L304L|ADAM2_uc003xnl.2_Silent_p.L178L	NM_001464	NP_001455	Q99965	ADAM2_HUMAN	ADAM metallopeptidase domain 2 proprotein	304	Extracellular (Potential).|Peptidase M12B.				cell adhesion|fusion of sperm to egg plasma membrane|proteolysis	integral to plasma membrane	integrin binding|metalloendopeptidase activity|zinc ion binding			ovary(1)|lung(1)	2		all_cancers(7;2.38e-28)|all_epithelial(6;8.85e-21)|all_lung(54;1.24e-07)|Lung NSC(58;1.94e-07)|Hepatocellular(245;0.00745)|Breast(189;0.00908)|Renal(179;0.0183)|Colorectal(162;0.246)	LUSC - Lung squamous cell carcinoma(45;0.000149)	READ - Rectum adenocarcinoma(644;0.0689)|Kidney(114;0.162)		CAAGTGATTCCAGACTTATGG	0.368													6	32					0	0	0.001168	0	0
FAM150A	389658	broad.mit.edu	37	8	53454998	53454998	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:53454998G>A	uc003xrd.2	-	2	403	c.198C>T	c.(196-198)TTC>TTT	p.F66F	FAM150A_uc011ldt.1_Silent_p.F66F	NM_207413	NP_997296	Q6UXT8	F150A_HUMAN	hypothetical protein LOC389658 precursor	66						extracellular region					0		Lung NSC(129;0.0919)|all_epithelial(80;0.125)|all_lung(136;0.17)				AGTCTCTTGGGAATATTTCTG	0.274													4	27					0	0	0.009096	0	0
PREX2	80243	broad.mit.edu	37	8	68992680	68992680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:68992680C>T	uc003xxv.1	+	16	1672	c.1645C>T	c.(1645-1647)CTT>TTT	p.L549F	PREX2_uc003xxu.1_Missense_Mutation_p.L549F|PREX2_uc011lez.1_Missense_Mutation_p.L484F	NM_024870	NP_079146	Q70Z35	PREX2_HUMAN	DEP domain containing 2 isoform a	549	DEP 2.				G-protein coupled receptor protein signaling pathway|intracellular signal transduction	intracellular	protein binding|Rac GTPase activator activity|Rac guanyl-nucleotide exchange factor activity			skin(6)|large_intestine(4)|pancreas(3)|lung(2)|ovary(1)|kidney(1)	17						TTCTGTAGTCCTTGAAAAAAG	0.338													7	35					0	0	0.003080	0	0
KCNB2	9312	broad.mit.edu	37	8	73480034	73480034	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:73480034C>T	uc003xzb.2	+	2	653	c.65C>T	c.(64-66)CCA>CTA	p.P22L		NM_004770	NP_004761	Q92953	KCNB2_HUMAN	potassium voltage-gated channel, Shab-related	22	Cytoplasmic (Potential).				regulation of smooth muscle contraction	voltage-gated potassium channel complex	delayed rectifier potassium channel activity|protein binding			skin(3)|large_intestine(1)|pancreas(1)|ovary(1)|central_nervous_system(1)	7	Breast(64;0.137)		Epithelial(68;0.105)			TCCCTTCCTCCAGAGCCTGTG	0.537													11	61					0	0	0.008291	0	0
FAM92A1	137392	broad.mit.edu	37	8	94722059	94722059	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:94722059G>A	uc010maq.2	+	5	602	c.499G>A	c.(499-501)GAA>AAA	p.E167K	FAM92A1_uc003yfv.3_RNA|FAM92A1_uc003yfx.3_RNA|FAM92A1_uc003yfw.3_RNA|FAM92A1_uc010mar.2_Missense_Mutation_p.E12K	NM_145269	NP_660312	A1XBS5	F92A1_HUMAN	hypothetical protein LOC137392	167	Potential.										0	Breast(36;2.4e-06)		BRCA - Breast invasive adenocarcinoma(8;0.0168)			TCATCTGGAGGAAACTATTAA	0.338													4	19					0	0	0.001168	0	0
TMEM67	91147	broad.mit.edu	37	8	94809390	94809390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:94809390C>T	uc011lgk.1	+	19	1960	c.1889C>T	c.(1888-1890)TCC>TTC	p.S630F	TMEM67_uc010maw.2_Missense_Mutation_p.S336F|TMEM67_uc003yga.3_Missense_Mutation_p.S549F|TMEM67_uc011lgl.1_Missense_Mutation_p.S29F	NM_153704	NP_714915	Q5HYA8	MKS3_HUMAN	meckelin isoform 1	630					cilium assembly|ER-associated protein catabolic process|negative regulation of centrosome duplication	centrosome|cilium membrane|cytoplasmic vesicle membrane|endoplasmic reticulum membrane|integral to membrane|microtubule basal body	unfolded protein binding			ovary(2)	2	Breast(36;4.14e-07)		BRCA - Breast invasive adenocarcinoma(8;0.00896)			AAGCTCATATCCCAGATTACA	0.323													8	31					0	0	0.004482	0	0
MATN2	4147	broad.mit.edu	37	8	98943551	98943551	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:98943551G>A	uc003yic.2	+	3	744	c.513G>A	c.(511-513)GGG>GGA	p.G171G	MATN2_uc003yib.1_Silent_p.G171G|MATN2_uc010mbh.1_Silent_p.G171G|MATN2_uc003yid.2_Silent_p.G171G|MATN2_uc003yie.1_Silent_p.G171G|MATN2_uc010mbi.1_Silent_p.G45G	NM_002380	NP_002371	O00339	MATN2_HUMAN	matrilin 2 isoform a precursor	171	VWFA 1.					proteinaceous extracellular matrix	calcium ion binding			ovary(2)	2	Breast(36;1.43e-06)		OV - Ovarian serous cystadenocarcinoma(57;0.244)			TGACAGATGGGAGACCTCAGG	0.582													5	27					0	0	0.001984	0	0
CSMD3	114788	broad.mit.edu	37	8	113323258	113323258	+	Nonsense_Mutation	SNP	T	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:113323258T>A	uc003ynu.2	-	50	7993	c.7834A>T	c.(7834-7836)AAG>TAG	p.K2612*	CSMD3_uc003yns.2_Nonsense_Mutation_p.K1814*|CSMD3_uc003ynt.2_Nonsense_Mutation_p.K2572*|CSMD3_uc011lhx.1_Nonsense_Mutation_p.K2508*|CSMD3_uc003ynw.1_Nonsense_Mutation_p.K323*	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	2612	Extracellular (Potential).|Sushi 14.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						TAGGAAGACTTTCTGCACACA	0.458										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			5	43					0	0	0.001984	0	0
ZFAT	57623	broad.mit.edu	37	8	135649738	135649738	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:135649738G>A	uc003yup.2	-	3	589	c.414C>T	c.(412-414)ATC>ATT	p.I138I	ZFAT_uc003yun.2_Silent_p.I126I|ZFAT_uc003yuo.2_Silent_p.I126I|ZFAT_uc010meh.2_Silent_p.I126I|ZFAT_uc010mei.2_RNA|ZFAT_uc003yuq.2_Silent_p.I126I|ZFAT_uc010mej.2_Silent_p.I138I|ZFAT_uc003yur.2_Silent_p.I126I	NM_020863	NP_065914	Q9P243	ZFAT_HUMAN	zinc finger protein 406 isoform ZFAT-1	138	C2H2-type 2; degenerate.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1	all_epithelial(106;8.26e-19)|Lung NSC(106;3.47e-07)|all_lung(105;1.39e-06)|Ovarian(258;0.0102)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0432)			AATTCAGCACGATAATGCAGA	0.507													13	72					0	0	0.001855	0	0
FAM135B	51059	broad.mit.edu	37	8	139277969	139277969	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:139277969G>A	uc003yuy.2	-	4	445	c.274C>T	c.(274-276)CAT>TAT	p.H92Y	FAM135B_uc003yux.2_5'UTR|FAM135B_uc003yuz.2_RNA	NM_015912	NP_056996	Q49AJ0	F135B_HUMAN	hypothetical protein LOC51059	92										ovary(7)|skin(2)	9	all_epithelial(106;8.29e-14)|Lung NSC(106;6.88e-06)|all_lung(105;1.44e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0805)			AAGAGTAAATGAACTCGGAAG	0.473										HNSCC(54;0.14)			7	29					0	0	0.001984	0	0
DENND3	22898	broad.mit.edu	37	8	142188236	142188236	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:142188236C>A	uc003yvy.2	+	16	2815	c.2537C>A	c.(2536-2538)TCA>TAA	p.S846*	DENND3_uc010mep.2_Nonsense_Mutation_p.S807*	NM_014957	NP_055772	A2RUS2	DEND3_HUMAN	DENN/MADD domain containing 3	846										ovary(1)	1	all_cancers(97;7.36e-15)|all_epithelial(106;2.33e-13)|Lung NSC(106;1.23e-05)|all_lung(105;1.75e-05)|Ovarian(258;0.01)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.105)			ACACTGCAGTCACCAGGCGCC	0.507													4	18					0.00024832	0.000265905	0.009096	1	0
RHPN1	114822	broad.mit.edu	37	8	144464776	144464776	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr8:144464776G>A	uc003yyb.2	+	15	2101	c.1968G>A	c.(1966-1968)GTG>GTA	p.V656V		NM_052924	NP_443156	Q8TCX5	RHPN1_HUMAN	rhophilin 1	681					signal transduction	intracellular				large_intestine(1)	1	all_cancers(97;7.39e-11)|all_epithelial(106;5.44e-09)|Lung NSC(106;0.000167)|all_lung(105;0.000459)|Ovarian(258;0.0212)|Acute lymphoblastic leukemia(118;0.155)		Colorectal(110;0.107)|BRCA - Breast invasive adenocarcinoma(115;0.156)			GTGCCCCAGTGAAGCCAGCTC	0.701													7	20					0	0	0.008291	0	0
NFIB	4781	broad.mit.edu	37	9	14146711	14146711	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:14146711C>T	uc003zle.2	-	6	1337	c.902G>A	c.(901-903)CGA>CAA	p.R301Q	NFIB_uc003zld.2_Missense_Mutation_p.R49Q|NFIB_uc003zlf.2_Missense_Mutation_p.R301Q|NFIB_uc011lmo.1_Missense_Mutation_p.R301Q	NM_005596	NP_005587	O00712	NFIB_HUMAN	nuclear factor I/B	301					anterior commissure morphogenesis|chondrocyte differentiation|Clara cell differentiation|commissural neuron axon guidance|DNA replication|glial cell differentiation|lung ciliated cell differentiation|negative regulation of DNA binding|negative regulation of epithelial cell proliferation involved in lung morphogenesis|negative regulation of mesenchymal cell proliferation involved in lung development|positive regulation of transcription from RNA polymerase II promoter|principal sensory nucleus of trigeminal nerve development|Type I pneumocyte differentiation|Type II pneumocyte differentiation	cerebellar mossy fiber|nucleolus|nucleus	RNA polymerase II transcription corepressor activity|sequence-specific DNA binding RNA polymerase II transcription factor activity				0				GBM - Glioblastoma multiforme(50;4.4e-08)|LUAD - Lung adenocarcinoma(58;0.119)|Lung(218;0.164)		GTGCCATGTTCGACTTCCAGC	0.413			T	MYB|HGMA2	adenoid cystic carcinoma|lipoma								7	84					0	0	0.003080	0	0
IFNA10	3446	broad.mit.edu	37	9	21206918	21206918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:21206918C>T	uc003zoq.1	-	1	225	c.179G>A	c.(178-180)CGA>CAA	p.R60Q	IFNA14_uc003zoo.1_Intron	NM_002171	NP_002162	P01566	IFN10_HUMAN	interferon, alpha 10 precursor	60					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;1.26e-23)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)|OV - Ovarian serous cystadenocarcinoma(39;0.17)		CTGGGGGATTCGGAAATCATG	0.517													32	84					0	0	0.004289	0	0
IFNA14	3448	broad.mit.edu	37	9	21239911	21239911	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:21239911C>T	uc010mis.2	-	1	68	c.24G>A	c.(22-24)ATG>ATA	p.M8I	IFNA14_uc003zoo.1_RNA	NM_002172	NP_002163	P01570	IFN14_HUMAN	interferon, alpha 14 precursor	8					blood coagulation|regulation of type I interferon-mediated signaling pathway|response to virus|type I interferon-mediated signaling pathway	extracellular space	cytokine activity|cytokine receptor binding				0				Lung(24;2.12e-22)|LUSC - Lung squamous cell carcinoma(38;1.4e-13)		CCAGGGCCATCATTAAAGCAA	0.512													11	52					0	0	0.013537	0	0
TAF1L	138474	broad.mit.edu	37	9	32630351	32630351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:32630351C>T	uc003zrg.1	-	1	5317	c.5227G>A	c.(5227-5229)GAT>AAT	p.D1743N		NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1743					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TCTGCAAGATCACCATCTCCC	0.488													20	104					0	0	0.010504	0	0
TAF1L	138474	broad.mit.edu	37	9	32632084	32632084	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:32632084C>T	uc003zrg.1	-	1	3584	c.3494G>A	c.(3493-3495)AGA>AAA	p.R1165K	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1165					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		GACATCATCTCTGTGATTGTT	0.498													4	38					0	0	0.000602	0	0
C9orf128	392307	broad.mit.edu	37	9	35819900	35819901	+	Missense_Mutation	DNP	GT	AA	AA			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:35819900_35819901GT>AA	uc010mlc.2	-	4	1124_1125	c.839_840AC>TT	c.(838-840)CAC>CTT	p.H280L	C9orf128_uc003zyj.2_RNA|C9orf128_uc011lpg.1_Missense_Mutation_p.H280L	NM_001012446	NP_001012448	A6H8Z2	CI128_HUMAN	hypothetical protein LOC392307	280											0	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)			AGATGATCCGGTGCTCTCTCAA	0.515													5	34					0	0	0.004672	0	0
FAM75A6	389730	broad.mit.edu	37	9	43627544	43627544	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:43627544G>A	uc011lrb.1	-	4	1172	c.1143C>T	c.(1141-1143)CCC>CCT	p.P381P		NM_001145196	NP_001138668	Q5VVP1	F75A6_HUMAN	hypothetical protein LOC389730	381						integral to membrane					0						TGTTCCAGAAGGGTTTTGGGT	0.448													24	172					0	0	0.003330	0	0
PRKACG	5568	broad.mit.edu	37	9	71628337	71628337	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:71628337G>A	uc004agy.2	-	1	703	c.672C>T	c.(670-672)GCC>GCT	p.A224A		NM_002732	NP_002723	P22612	KAPCG_HUMAN	protein kinase, cAMP-dependent, catalytic,	224	Protein kinase.				activation of phospholipase C activity|activation of protein kinase A activity|blood coagulation|cellular response to glucagon stimulus|energy reserve metabolic process|gluconeogenesis|intracellular protein kinase cascade|male gonad development|nerve growth factor receptor signaling pathway|regulation of insulin secretion|spermatogenesis|transmembrane transport|triglyceride catabolic process|water transport	cytosol|nucleoplasm	ATP binding|cAMP-dependent protein kinase activity			ovary(1)|pancreas(1)|skin(1)	3						GCACCCCTAGGGCCCACCAGT	0.622													6	34					0	0	0.004482	0	0
TRPM6	140803	broad.mit.edu	37	9	77403570	77403570	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:77403570C>T	uc004ajl.1	-	20	2865	c.2627G>A	c.(2626-2628)AGC>AAC	p.S876N	TRPM6_uc004ajk.1_Missense_Mutation_p.S871N|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Intron|TRPM6_uc010mpd.1_Intron|TRPM6_uc010mpe.1_Intron|TRPM6_uc004ajm.1_Intron	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	876	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GATGTAAATGCTAACAAGCCA	0.507													9	36					0	0	0.004482	0	0
FLJ46321	389763	broad.mit.edu	37	9	84609196	84609196	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:84609196G>A	uc004amn.2	+	4	3858	c.3811G>A	c.(3811-3813)GAG>AAG	p.E1271K		NM_001001670	NP_001001670	Q6ZQQ2	F75D1_HUMAN	hypothetical protein LOC389763	1271						integral to membrane					0						ACAGAAGCAGGAGCCCAGGGT	0.542													7	60					0	0	0.001984	0	0
ZNF189	7743	broad.mit.edu	37	9	104171026	104171026	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:104171026C>T	uc004bbh.1	+	3	1252	c.976C>T	c.(976-978)CGA>TGA	p.R326*	ZNF189_uc004bbg.1_Nonsense_Mutation_p.R284*|ZNF189_uc004bbi.1_Nonsense_Mutation_p.R312*|ZNF189_uc011lvk.1_Nonsense_Mutation_p.R311*	NM_003452	NP_003443	O75820	ZN189_HUMAN	zinc finger protein 189 isoform 1	326	C2H2-type 7.				negative regulation of transcription from RNA polymerase II promoter	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)|skin(2)|kidney(1)|central_nervous_system(1)	6		Acute lymphoblastic leukemia(62;0.0559)				GAAAGCCTTTCGATTAAGCAC	0.398													7	59					0	0	0.003080	0	0
SVEP1	79987	broad.mit.edu	37	9	113170131	113170131	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:113170131G>A	uc010mtz.2	-	38	8086	c.7749C>T	c.(7747-7749)TTC>TTT	p.F2583F	SVEP1_uc010mty.2_Silent_p.F509F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	2583	Sushi 20.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						GAAACCCAGGGAAGCAACTGT	0.488													14	66					0	0	0.002450	0	0
SVEP1	79987	broad.mit.edu	37	9	113208295	113208295	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:113208295C>T	uc010mtz.2	-	26	4622	c.4285G>A	c.(4285-4287)GAT>AAT	p.D1429N	SVEP1_uc010mua.1_Missense_Mutation_p.D1429N	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1429					cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						ACTTCAAAATCCAGGTTAAAG	0.433													5	9					0	0	0.001168	0	0
C9orf84	158401	broad.mit.edu	37	9	114449114	114449114	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:114449114C>T	uc004bfr.2	-	26	4406	c.4271G>A	c.(4270-4272)CGA>CAA	p.R1424Q	C9orf84_uc011lwt.1_RNA|C9orf84_uc004bfq.2_Missense_Mutation_p.R1385Q|C9orf84_uc010mug.2_Missense_Mutation_p.R1335Q	NM_173521	NP_775792	Q5VXU9	CI084_HUMAN	hypothetical protein LOC158401 isoform 1	1424										ovary(2)	2						TGCTAGACGTCGTTTTTTGAA	0.373													4	49					0	0	0.009096	0	0
SUSD1	64420	broad.mit.edu	37	9	114905786	114905786	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:114905786G>A	uc004bfu.2	-	4	532	c.491C>T	c.(490-492)CCT>CTT	p.P164L	SUSD1_uc010mui.2_Missense_Mutation_p.P164L|SUSD1_uc010muj.2_Missense_Mutation_p.P164L	NM_022486	NP_071931	Q6UWL2	SUSD1_HUMAN	sushi domain containing 1 precursor	164	Extracellular (Potential).					integral to membrane	calcium ion binding				0						CGGGTGGAAAGGTTCAGGTCC	0.507													7	56					0	0	0.001984	0	0
AKNA	80709	broad.mit.edu	37	9	117104355	117104355	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:117104355G>A	uc004biq.3	-	19	3943	c.3808C>T	c.(3808-3810)CAG>TAG	p.Q1270*	AKNA_uc004bin.3_Nonsense_Mutation_p.Q517*|AKNA_uc004bio.3_Nonsense_Mutation_p.Q730*|AKNA_uc004bip.3_Nonsense_Mutation_p.Q1189*|AKNA_uc004bir.3_Nonsense_Mutation_p.Q1270*|AKNA_uc004bis.3_Nonsense_Mutation_p.Q1270*|AKNA_uc010mve.2_Nonsense_Mutation_p.Q1151*	NM_030767	NP_110394	Q7Z591	AKNA_HUMAN	AT-hook transcription factor	1270					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(4)|central_nervous_system(2)	6						AGGGGACACTGAAGGGTATCA	0.552													14	38					0	0	0.003163	0	0
PAPPA	5069	broad.mit.edu	37	9	118950283	118950283	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:118950283G>A	uc004bjn.2	+	2	1647	c.1266G>A	c.(1264-1266)GAG>GAA	p.E422E	PAPPA_uc011lxp.1_Silent_p.E215E|PAPPA_uc011lxq.1_Silent_p.E215E	NM_002581	NP_002572	Q13219	PAPP1_HUMAN	pregnancy-associated plasma protein A	422	Metalloprotease.				cell differentiation|female pregnancy	cytoplasm|extracellular region|membrane	metalloendopeptidase activity|zinc ion binding			ovary(4)|skin(4)|pancreas(1)	9						TTGGGGATGAGAACTGTGACC	0.632													7	32					0	0	0.001984	0	0
OR5C1	392391	broad.mit.edu	37	9	125551886	125551886	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:125551886C>T	uc011lzd.1	+	1	675	c.675C>T	c.(673-675)ATC>ATT	p.I225I		NM_001001923	NP_001001923	Q8NGR4	OR5C1_HUMAN	olfactory receptor, family 5, subfamily C,	225	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			pancreas(1)	1						ATGGCTTCATCGCTGGGGCTG	0.592													6	35					0	0	0.004482	0	0
ST6GALNAC6	30815	broad.mit.edu	37	9	130648991	130648991	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:130648991G>A	uc004bso.1	-	7	1008	c.889C>T	c.(889-891)CAG>TAG	p.Q297*	ST6GALNAC6_uc004bsn.1_Nonsense_Mutation_p.Q263*|ST6GALNAC6_uc011man.1_Nonsense_Mutation_p.Q97*|ST6GALNAC6_uc004bsp.1_Silent_p.S295S|ST6GALNAC6_uc004bsq.1_Nonsense_Mutation_p.Q263*|ST6GALNAC6_uc004bsr.2_Nonsense_Mutation_p.Q263*|ST6GALNAC6_uc010mxp.1_RNA	NM_013443	NP_038471	Q969X2	SIA7F_HUMAN	sialytransferase 7F	297	Lumenal (Potential).				protein glycosylation	integral to Golgi membrane|plasma membrane					0						TGCTCATTCTGGATGTAGGTG	0.547													15	55					0	0	0.003163	0	0
SPTAN1	6709	broad.mit.edu	37	9	131370322	131370322	+	Silent	SNP	A	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:131370322A>G	uc004bvl.3	+	33	4451	c.4338A>G	c.(4336-4338)GAA>GAG	p.E1446E	SPTAN1_uc004bvm.3_Silent_p.E1446E|SPTAN1_uc004bvn.3_Silent_p.E1426E	NM_003127	NP_003118	Q13813	SPTA2_HUMAN	spectrin, alpha, non-erythrocytic 1	1446	Spectrin 16.				actin filament capping|axon guidance|cellular component disassembly involved in apoptosis	cytosol|intracellular membrane-bounded organelle|membrane fraction|microtubule cytoskeleton|spectrin	actin binding|calcium ion binding|calmodulin binding|structural constituent of cytoskeleton			breast(5)|ovary(4)|pancreas(1)	10						AGTGCCTTGAACTGCAGGTGT	0.532													15	88					0	0	0.002450	0	0
LRRC8A	56262	broad.mit.edu	37	9	131670623	131670623	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:131670623C>T	uc004bwl.3	+	3	1434	c.1180C>T	c.(1180-1182)CTG>TTG	p.L394L	LRRC8A_uc010myp.2_Silent_p.L394L|LRRC8A_uc010myq.2_Silent_p.L394L	NM_019594	NP_062540	Q8IWT6	LRC8A_HUMAN	leucine rich repeat containing 8 family, member	394	LRR 1.				pre-B cell differentiation	integral to membrane					0						CGCCGTCTTCCTGTCGGAGGT	0.587													8	52					0	0	0.006214	0	0
GTF3C5	9328	broad.mit.edu	37	9	135927459	135927459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:135927459C>T	uc004cci.3	+	5	1118	c.781C>T	c.(781-783)CGT>TGT	p.R261C	GTF3C5_uc010mzz.2_Missense_Mutation_p.R136C|GTF3C5_uc004ccj.3_Missense_Mutation_p.R261C	NM_012087	NP_036219	Q9Y5Q8	TF3C5_HUMAN	general transcription factor IIIC, polypeptide 5	261						transcription factor TFIIIC complex	DNA binding|protein binding				0				OV - Ovarian serous cystadenocarcinoma(145;4.01e-06)|Epithelial(140;4e-05)		GTTTGACATCCGTCCCATCTG	0.567													7	29					0	0	0.004482	0	0
COL5A1	1289	broad.mit.edu	37	9	137593137	137593137	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:137593137C>T	uc004cfe.2	+	4	994	c.612C>T	c.(610-612)ATC>ATT	p.I204I		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	204	TSP N-terminal.|Laminin G-like.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		TCAATGGCATCATCGTGTTTG	0.557													3	15					0	0	0.009096	0	0
COL5A1	1289	broad.mit.edu	37	9	137677874	137677874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:137677874C>T	uc004cfe.2	+	31	3008	c.2626C>T	c.(2626-2628)CCA>TCA	p.P876S		NM_000093	NP_000084	P20908	CO5A1_HUMAN	alpha 1 type V collagen preproprotein	876	Triple-helical region.				axon guidance|cell adhesion|collagen biosynthetic process|collagen fibril organization|eye morphogenesis|fibril organization|integrin biosynthetic process|skin development|wound healing, spreading of epidermal cells	collagen type V	heparin binding|integrin binding|platelet-derived growth factor binding|proteoglycan binding			skin(4)|ovary(3)|pancreas(2)|central_nervous_system(1)|kidney(1)	11		Myeloproliferative disorder(178;0.0341)		all cancers(34;2.28e-08)|OV - Ovarian serous cystadenocarcinoma(145;6.03e-08)|Epithelial(140;6.4e-08)|GBM - Glioblastoma multiforme(294;0.131)		ACCAGGGTATCCAGGAAGACA	0.592													3	13					0	0	0.000602	0	0
EHMT1	79813	broad.mit.edu	37	9	140711964	140711965	+	Missense_Mutation	DNP	AC	TT	TT			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr9:140711964_140711965AC>TT	uc011mfc.1	+	24	3485_3486	c.3448_3449AC>TT	c.(3448-3450)ACC>TTC	p.T1150F	EHMT1_uc004coe.2_Missense_Mutation_p.T55F	NM_024757	NP_079033	Q9H9B1	EHMT1_HUMAN	euchromatic histone-lysine N-methyltransferase 1	1150	SET.				DNA methylation|embryo development|peptidyl-lysine dimethylation|peptidyl-lysine monomethylation	chromosome|nucleus	histone methyltransferase activity (H3-K27 specific)|histone methyltransferase activity (H3-K9 specific)|p53 binding|zinc ion binding			breast(2)|pancreas(1)	3	all_cancers(76;0.164)			OV - Ovarian serous cystadenocarcinoma(145;0.000183)|Epithelial(140;0.000728)		CCCACCAGGCACCTTTGTCTGC	0.609													7	52					0	0	0.004672	0	0
REPS2	9185	broad.mit.edu	37	X	17151948	17151948	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:17151948C>T	uc004cxv.1	+	15	1751	c.1580C>T	c.(1579-1581)TCT>TTT	p.S527F	REPS2_uc004cxw.1_Missense_Mutation_p.S526F|REPS2_uc011miw.1_Missense_Mutation_p.S325F	NM_004726	NP_004717	Q8NFH8	REPS2_HUMAN	RALBP1 associated Eps domain containing 2	527	Interaction with RALBP1.				epidermal growth factor receptor signaling pathway|protein complex assembly	cytoplasm	calcium ion binding|protein binding			skin(2)|central_nervous_system(1)	3	Hepatocellular(33;0.183)					TTGCTACAGTCTGAACAAGTG	0.478													20	91					0	0	0.004656	0	0
CNKSR2	22866	broad.mit.edu	37	X	21450848	21450848	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:21450848C>T	uc004czx.1	+	3	383	c.347C>T	c.(346-348)ACC>ATC	p.T116I	CNKSR2_uc004czw.2_Missense_Mutation_p.T116I|CNKSR2_uc011mjn.1_Missense_Mutation_p.T116I|CNKSR2_uc011mjo.1_Missense_Mutation_p.T116I	NM_014927	NP_055742	Q8WXI2	CNKR2_HUMAN	connector enhancer of kinase suppressor of Ras	116	CRIC.				regulation of signal transduction	cytoplasm|membrane	protein binding			large_intestine(1)|lung(1)	2						GATGGGAGGACCAGCCGAAAA	0.448													15	75					0	0	0.003163	0	0
FAM47A	158724	broad.mit.edu	37	X	34148949	34148949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:34148949G>A	uc004ddg.2	-	1	1480	c.1447C>T	c.(1447-1449)CCC>TCC	p.P483S		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	483										ovary(4)|central_nervous_system(1)	5						CGTGTCTTGGGATGTTCCGGG	0.617													5	40					0	0	0.000602	0	0
FAM47B	170062	broad.mit.edu	37	X	34961230	34961230	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:34961230G>A	uc004ddi.1	+	1	300	c.282G>A	c.(280-282)AAG>AAA	p.K94K		NM_152631	NP_689844	Q8NA70	FA47B_HUMAN	hypothetical protein LOC170062	94										ovary(3)|breast(1)	4						AAAGCAGGAAGAAAAAGCTGC	0.527													18	26					0	0	0.006122	0	0
MAGEB16	139604	broad.mit.edu	37	X	35820810	35820810	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:35820810T>G	uc010ngt.1	+	2	776	c.497T>G	c.(496-498)TTT>TGT	p.F166C		NM_001099921	NP_001093391	A2A368	MAGBG_HUMAN	melanoma antigen family B, 16	166	MAGE.									lung(3)|ovary(2)|breast(1)|skin(1)	7						GAGATGATATTTGGCCTTGAT	0.478													10	24					0	0	0.013537	0	0
FOXP3	50943	broad.mit.edu	37	X	49113391	49113391	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:49113391C>T	uc004dnf.3	-	5	721	c.533G>A	c.(532-534)AGG>AAG	p.R178K	FOXP3_uc011mnb.1_Missense_Mutation_p.R178K|FOXP3_uc011mnc.1_Missense_Mutation_p.R178K|FOXP3_uc004dne.3_Missense_Mutation_p.R143K|FOXP3_uc010niq.1_Missense_Mutation_p.R143K	NM_014009	NP_054728	Q9BZS1	FOXP3_HUMAN	forkhead box P3 isoform a	178					B cell homeostasis|cerebellum development|chromatin remodeling|embryo development|myeloid cell homeostasis|negative regulation of activated T cell proliferation|negative regulation of chronic inflammatory response|negative regulation of CREB transcription factor activity|negative regulation of cytokine secretion|negative regulation of histone acetylation|negative regulation of histone deacetylation|negative regulation of interferon-gamma biosynthetic process|negative regulation of interferon-gamma production|negative regulation of interleukin-10 production|negative regulation of interleukin-2 biosynthetic process|negative regulation of interleukin-2 production|negative regulation of interleukin-4 production|negative regulation of interleukin-5 production|negative regulation of interleukin-6 production|negative regulation of isotype switching to IgE isotypes|negative regulation of NF-kappaB transcription factor activity|negative regulation of T cell cytokine production|negative regulation of tumor necrosis factor production|pattern specification process|positive regulation of CD4-positive, CD25-positive, alpha-beta regulatory T cell differentiation|positive regulation of histone acetylation|positive regulation of immature T cell proliferation in thymus|positive regulation of peripheral T cell tolerance induction|positive regulation of T cell anergy|positive regulation of transcription from RNA polymerase II promoter|positive regulation of transforming growth factor-beta1 production|post-embryonic development|regulation of isotype switching to IgG isotypes|response to virus|T cell homeostasis|T cell receptor signaling pathway|tolerance induction to self antigen	cytoplasm|cytoplasm|nucleus|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|histone acetyltransferase binding|histone deacetylase binding|NF-kappaB binding|NFAT protein binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription corepressor activity|zinc ion binding				0	Ovarian(276;0.236)					CCTGTCCTTCCTGGGTGCACT	0.657													11	11					0	0	0.013537	0	0
DGKK	139189	broad.mit.edu	37	X	50163469	50163469	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:50163469G>A	uc010njr.1	-	4	934	c.874C>T	c.(874-876)CCC>TCC	p.P292S		NM_001013742	NP_001013764	Q5KSL6	DGKK_HUMAN	diacylglycerol kinase kappa	292	PH.				activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|diacylglycerol metabolic process|intracellular signal transduction|platelet activation|response to oxidative stress	cytoplasm|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)	2	Ovarian(276;0.236)					TTCCGGTTGGGTGCAGCCAGA	0.393													30	32					0	0	0.012213	0	0
MTMR8	55613	broad.mit.edu	37	X	63557176	63557176	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:63557176G>A	uc004dvs.2	-	9	1141	c.1073C>T	c.(1072-1074)CCA>CTA	p.P358L	MTMR8_uc011mou.1_Missense_Mutation_p.P358L|MTMR8_uc004dvt.1_Missense_Mutation_p.P358L	NM_017677	NP_060147	Q96EF0	MTMR8_HUMAN	myotubularin related protein 8	358	Myotubularin phosphatase.					nuclear envelope	protein tyrosine phosphatase activity			ovary(2)|breast(2)	4						CCTATAAAATGGATCTAGGAG	0.423													5	10					0	0	0.001168	0	0
MUM1L1	139221	broad.mit.edu	37	X	105449518	105449518	+	Silent	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:105449518G>A	uc004emf.1	+	4	742	c.93G>A	c.(91-93)AGG>AGA	p.R31R	MUM1L1_uc004emg.1_Silent_p.R31R	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	31										ovary(2)|pancreas(1)|skin(1)	4						ACAGTAAGAGGAAAAAGGCAT	0.353													3	6					0	0	0.009096	0	0
AKAP14	158798	broad.mit.edu	37	X	119048716	119048716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:119048716G>A	uc004ese.2	+	5	454	c.316G>A	c.(316-318)GAC>AAC	p.D106N	AKAP14_uc004esf.2_Intron	NM_178813	NP_848928	Q86UN6	AKA28_HUMAN	A kinase (PRKA) anchor protein 14 isoform a	106						cytoplasm					0						AGAGAGGAAAGACTTAATTCA	0.408													15	34					0	0	0.004007	0	0
GLUD2	2747	broad.mit.edu	37	X	120181873	120181873	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:120181873G>A	uc004eto.2	+	1	412	c.335G>A	c.(334-336)TGC>TAC	p.C112Y		NM_012084	NP_036216	P49448	DHE4_HUMAN	glutamate dehydrogenase 2 precursor	112					glutamate biosynthetic process|glutamate catabolic process	mitochondrial matrix	ADP binding|glutamate dehydrogenase|glutamate dehydrogenase activity|GTP binding|leucine binding			pancreas(1)	1					L-Glutamic Acid(DB00142)|NADH(DB00157)	ATCAAGCCCTGCAACCATGTG	0.647													6	9					0	0	0.001168	0	0
ODZ1	10178	broad.mit.edu	37	X	123654524	123654524	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:123654524C>T	uc004euj.2	-	18	3208	c.3144G>A	c.(3142-3144)ACG>ACA	p.T1048T	ODZ1_uc011muj.1_Silent_p.T1047T|ODZ1_uc010nqy.2_Silent_p.T1048T	NM_014253	NP_055068	Q9UKZ4	TEN1_HUMAN	odz, odd Oz/ten-m homolog 1 isoform 3	1048	Extracellular (Potential).				immune response|negative regulation of cell proliferation|nervous system development|signal transduction	extracellular region	heparin binding			ovary(11)|breast(4)|large_intestine(2)|skin(2)|pancreas(2)|upper_aerodigestive_tract(1)|lung(1)	23						CTACAGGAATCGTTGAATGTG	0.493													13	34					0	0	0.001855	0	0
SMARCA1	6594	broad.mit.edu	37	X	128582286	128582286	+	Silent	SNP	T	C	C			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:128582286T>C	uc004eun.3	-	24	3278	c.3165A>G	c.(3163-3165)TAA>TAG	p.*1055*	SMARCA1_uc004eup.3_Silent_p.*1043*|SMARCA1_uc011muk.1_Intron|SMARCA1_uc011mul.1_Intron	NM_003069	NP_003060	P28370	SMCA1_HUMAN	SWI/SNF-related matrix-associated	1055					ATP-dependent chromatin remodeling|brain development|neuron differentiation|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	NURF complex	ATP binding|DNA binding|helicase activity|nucleosome binding|protein binding			ovary(3)|skin(1)	4						TACCTAAAAGTTAGGAAAATG	0.299													5	24					0	0	0.001168	0	0
GPR112	139378	broad.mit.edu	37	X	135430517	135430517	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:135430517C>T	uc004ezu.1	+	6	4943	c.4652C>T	c.(4651-4653)CCC>CTC	p.P1551L	GPR112_uc010nsb.1_Missense_Mutation_p.P1346L|GPR112_uc010nsc.1_Missense_Mutation_p.P1318L	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	1551	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					TTGAAAAGTCCCTGTACAGCC	0.418													9	34					0	0	0.004482	0	0
GPR112	139378	broad.mit.edu	37	X	135469965	135469965	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:135469965G>A	uc004ezu.1	+	16	8134	c.7843G>A	c.(7843-7845)GAG>AAG	p.E2615K	GPR112_uc010nsb.1_Missense_Mutation_p.E2410K	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2615	Extracellular (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					ATCACTGACGGAGAGAATTCC	0.388													19	30					0	0	0.008871	0	0
CNGA2	1260	broad.mit.edu	37	X	150911672	150911672	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:150911672C>T	uc004fey.1	+	7	921	c.697C>T	c.(697-699)CTG>TTG	p.L233L		NM_005140	NP_005131	Q16280	CNGA2_HUMAN	cyclic nucleotide gated channel alpha 2	233	Helical; Name=H3; (Potential).				response to stimulus|sensory perception of smell	intracellular cyclic nucleotide activated cation channel complex	cAMP binding|intracellular cAMP activated cation channel activity			breast(3)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCCCACTGACCTGATCTATTT	0.542													4	17					0	0	0.000602	0	0
PNMA5	114824	broad.mit.edu	37	X	152159825	152159825	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:152159825C>T	uc010ntw.2	-	3	657	c.318G>A	c.(316-318)CTG>CTA	p.L106L	PNMA5_uc004fha.3_Silent_p.L106L|PNMA5_uc010ntx.2_Silent_p.L106L|PNMA5_uc004fgy.3_Silent_p.L106L	NM_001103151	NP_001096621	Q96PV4	PNMA5_HUMAN	paraneoplastic antigen like 5	106					apoptosis					ovary(1)|skin(1)	2	Acute lymphoblastic leukemia(192;6.56e-05)					ggaagtagttcagtctactga	0.04													25	64					0	0	0.002780	0	0
RENBP	5973	broad.mit.edu	37	X	153200957	153200957	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:153200957C>T	uc004fjo.1	-	10	1320	c.1150G>A	c.(1150-1152)GGA>AGA	p.G384R	NAA10_uc004fjm.1_5'Flank|NAA10_uc004fjn.1_5'Flank|NAA10_uc011mzg.1_5'Flank	NM_002910	NP_002901	P51606	RENBP_HUMAN	renin binding protein	384					mannose metabolic process|regulation of blood pressure		endopeptidase inhibitor activity|mannose-6-phosphate isomerase activity|N-acylglucosamine 2-epimerase activity			ovary(1)|pancreas(1)	2	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				N-Acetyl-D-glucosamine(DB00141)	AAAGGACCTCCCTTGATGGAG	0.642													13	32					0	0	0.004007	0	0
RENBP	5973	broad.mit.edu	37	X	153200958	153200958	+	Silent	SNP	C	T	T			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:153200958C>T	uc004fjo.1	-	10	1319	c.1149G>A	c.(1147-1149)AAG>AAA	p.K383K	NAA10_uc004fjm.1_5'Flank|NAA10_uc004fjn.1_5'Flank|NAA10_uc011mzg.1_5'Flank	NM_002910	NP_002901	P51606	RENBP_HUMAN	renin binding protein	383					mannose metabolic process|regulation of blood pressure		endopeptidase inhibitor activity|mannose-6-phosphate isomerase activity|N-acylglucosamine 2-epimerase activity			ovary(1)|pancreas(1)	2	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				N-Acetyl-D-glucosamine(DB00141)	AAGGACCTCCCTTGATGGAGA	0.642													13	32					0	0	0.004007	0	0
SLC30A10	55532	broad.mit.edu	37	1	220101176	220101176	+	Frame_Shift_Del	DEL	C	-	-			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:220101176delC	uc001hlw.2	-	1	818	c.607delG	c.(607-609)GAGfs	p.E203fs	SLC30A10_uc001hlu.1_Intron|SLC30A10_uc001hlx.2_5'UTR	NM_018713	NP_061183	Q6XR72	ZNT10_HUMAN	solute carrier family 30 (zinc transporter),	203	Cytoplasmic (Potential).				zinc ion transport	integral to membrane|plasma membrane	cation transmembrane transporter activity				0				GBM - Glioblastoma multiforme(131;0.051)|all cancers(67;0.209)		GCCCCCTTCTCCCGCTTCCTT	0.687													2	4	---	---	---	---					
FBXO28	23219	broad.mit.edu	37	1	224301887	224301887	+	Frame_Shift_Del	DEL	A	-	-			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr1:224301887delA	uc001hoh.2	+	1	97	c.56delA	c.(55-57)GACfs	p.D19fs	FBXO28_uc009xef.2_Frame_Shift_Del_p.D19fs|FBXO28_uc010pvc.1_5'UTR	NM_015176	NP_055991	Q9NVF7	FBX28_HUMAN	F-box protein 28 isoform a	19										ovary(2)|kidney(2)|lung(1)	5	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.0363)		GGCCAAGGCGACGGCGGTTCC	0.721													3	5	---	---	---	---					
FAM104A	84923	broad.mit.edu	37	17	71223356	71223357	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chr17:71223356_71223357insG	uc002jji.3	-	2	356_357	c.268_269insC	c.(268-270)CAGfs	p.Q90fs	FAM104A_uc002jjj.3_Frame_Shift_Ins_p.Q90fs	NM_032837	NP_116226	Q969W3	F104A_HUMAN	hypothetical protein LOC84923 isoform 2	90											0			LUSC - Lung squamous cell carcinoma(166;0.197)			TCTTTTGGTCTGGGGGGGAAGA	0.416													51	89	---	---	---	---					
DDX3X	1654	broad.mit.edu	37	X	41206947	41206948	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A2MU-06A-21D-A196-08	TCGA-EE-A2MU-10A-01D-A198-08									Somatic	Phase_I	Capture				Illumina GAIIx	d5c3e1c8-8b83-4678-9b28-b1c6beb793f8	2fe24235-9ab3-468d-9f11-54b0e6c0c8dc	g.chrX:41206947_41206948insG	uc004dfe.2	+	17	2819_2820	c.1964_1965insG	c.(1963-1965)CAGfs	p.Q655fs	DDX3X_uc004dff.2_Frame_Shift_Ins_p.Q654fs|DDX3X_uc011mkq.1_Frame_Shift_Ins_p.Q639fs|DDX3X_uc011mkr.1_Frame_Shift_Ins_p.Q525fs|DDX3X_uc011mks.1_Frame_Shift_Ins_p.Q132fs|DDX3X_uc004dfg.2_RNA	NM_001356	NP_001347	O00571	DDX3X_HUMAN	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3	655	Gly/Ser-rich.				interspecies interaction between organisms	cytoplasm|nuclear speck	ATP binding|ATP-dependent RNA helicase activity|DNA binding|protein binding|RNA binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6						TATAACTCCCAGGGGGTTGACT	0.421										HNSCC(61;0.18)			24	31	---	---	---	---					
