Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
WASH7P	653635	broad.mit.edu	37	1	15844	15844	+	RNA	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:15844T>C	uc009vis.2	-	2		c.258A>G			WASH7P_uc009vit.2_RNA|WASH7P_uc001aae.3_RNA|WASH7P_uc009viu.2_RNA|WASH7P_uc001aab.3_RNA|WASH7P_uc001aah.3_RNA|WASH7P_uc009vir.2_RNA|WASH7P_uc009viq.2_RNA|WASH7P_uc001aac.3_RNA|WASH7P_uc009viv.2_RNA|WASH7P_uc009viw.2_RNA|WASH7P_uc009vix.2_RNA|WASH7P_uc009vjd.2_RNA					Homo sapiens cDNA FLJ31670 fis, clone NT2RI2004984.												0						CGCTCCTTCATGCTGCGCAGC	0.647000													2	6					0	0	0.004672	0	0
PEX14	5195	broad.mit.edu	37	1	10689598	10689598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:10689598C>T	uc001arn.2	+	9	709	c.688C>T	c.(688-690)CCT>TCT	p.P230S	PEX14_uc009vmv.2_Missense_Mutation_p.P166S|PEX14_uc010oam.1_Missense_Mutation_p.P166S|PEX14_uc010oan.1_Missense_Mutation_p.P187S|PEX14_uc009vmw.2_Missense_Mutation_p.P166S	NM_004565	NP_004556	O75381	PEX14_HUMAN	peroxisomal biogenesis factor 14	230					negative regulation of sequence-specific DNA binding transcription factor activity|negative regulation of transcription, DNA-dependent|protein homooligomerization|protein import into peroxisome matrix|transmembrane transport	integral to membrane|nucleus|peroxisomal membrane|protein complex	protein N-terminus binding|transcription corepressor activity			breast(1)	1	Ovarian(185;0.203)	all_lung(284;6.02e-06)|Lung NSC(185;9.62e-06)|Renal(390;0.000147)|Breast(348;0.000932)|Colorectal(325;0.00215)|Hepatocellular(190;0.00913)|Ovarian(437;0.023)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0292)|Colorectal(212;9.13e-08)|COAD - Colon adenocarcinoma(227;2.07e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000482)|Kidney(185;0.00174)|KIRC - Kidney renal clear cell carcinoma(229;0.00457)|STAD - Stomach adenocarcinoma(132;0.0249)|READ - Rectum adenocarcinoma(331;0.0419)		GAGGCAGTTCCCTCCATCCCC	0.657000													57	102					0	0	0.014410	0	0
LOC649330	649330	broad.mit.edu	37	1	12907847	12907847	+	Missense_Mutation	SNP	C	T	T	rs150230498		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:12907847C>T	uc009vno.2	-	1	391	c.296G>A	c.(295-297)CGA>CAA	p.R99Q	HNRNPCL1_uc010obf.1_Missense_Mutation_p.R99Q	NM_001146181	NP_001139653	B7ZW38	B7ZW38_HUMAN	heterogeneous nuclear ribonucleoprotein C-like	99							nucleic acid binding|nucleotide binding				0						CGCTGCTGATCGTTTCACACC	0.488000													15	119					0	0	0.006122	0	0
MST1P9	11223	broad.mit.edu	37	1	17087475	17087475	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:17087475G>A	uc010ock.1	-	2	190	c.190C>T	c.(190-192)CGC>TGC	p.R64C	CROCC_uc009voy.1_Intron|MST1P9_uc001azp.3_5'Flank	NR_002729				SubName: Full=Hepatocyte growth factor-like protein homolog;												0						GGCCCACAGCGACCAGCACAC	0.632000													32	161					0	0	0.009718	0	0
CDA	978	broad.mit.edu	37	1	20931527	20931527	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:20931527C>T	uc001bdk.2	+	2	440	c.261C>T	c.(259-261)ATC>ATT	p.I87I	CDA_uc001bdl.2_RNA|CDA_uc009vpv.2_Intron	NM_001785	NP_001776	P32320	CDD_HUMAN	cytidine deaminase	87					cell surface receptor linked signaling pathway|cytosine metabolic process|negative regulation of cell growth|negative regulation of nucleotide metabolic process|protein homotetramerization|pyrimidine nucleoside salvage	cytosol|extracellular region	cytidine deaminase activity|nucleoside binding|protein homodimerization activity|zinc ion binding			ovary(1)	1		Lung NSC(340;1.75e-08)|all_lung(284;5.99e-08)|Colorectal(325;3.46e-05)|Renal(390;0.000147)|Breast(348;0.00179)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0182)|GBM - Glioblastoma multiforme(114;1.06e-08)|COAD - Colon adenocarcinoma(152;1.22e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000148)|Kidney(64;0.000184)|KIRC - Kidney renal clear cell carcinoma(64;0.0027)|STAD - Stomach adenocarcinoma(196;0.00308)|READ - Rectum adenocarcinoma(331;0.0652)|Lung(427;0.199)	Azacitidine(DB00928)|Capecitabine(DB01101)|Cytarabine(DB00987)|Gemcitabine(DB00441)	CAATTGCTATCGCCAGGTGAG	0.428000													8	22					0	0	0.008291	0	0
AK2	204	broad.mit.edu	37	1	33478982	33478982	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:33478982G>A	uc001bwp.1	-	6	562	c.520C>T	c.(520-522)CGT>TGT	p.R174C	uc001bwn.2_Intron|AK2_uc001bwo.1_Missense_Mutation_p.R174C|AK2_uc010ohq.1_Missense_Mutation_p.R166C|AK2_uc009vud.1_Missense_Mutation_p.R132C|AK2_uc010ohr.1_Missense_Mutation_p.R126C|AK2_uc001bwq.1_Missense_Mutation_p.R126C	NM_001625	NP_001616	P54819	KAD2_HUMAN	adenylate kinase 2 isoform a	174					nucleobase, nucleoside and nucleotide interconversion	mitochondrial intermembrane space	adenylate kinase activity|ATP binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)				TCTGATCGACGGATCAAGGGT	0.483000													12	16					0	0	0.001855	0	0
EIF2C3	192669	broad.mit.edu	37	1	36439064	36439064	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:36439064C>T	uc001bzp.2	+	5	866	c.610C>T	c.(610-612)CAT>TAT	p.H204Y	EIF2C3_uc001bzn.1_Missense_Mutation_p.H204Y|EIF2C3_uc001bzo.2_RNA|EIF2C3_uc001bzq.2_Intron	NM_024852	NP_079128	Q9H9G7	AGO3_HUMAN	eukaryotic translation initiation factor 2C, 3	204					mRNA catabolic process|negative regulation of translation involved in gene silencing by miRNA	cytoplasmic mRNA processing body|cytosol	protein binding|RNA binding				0		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0887)				GTTTGGATTCCATCAGTCTGT	0.463000													123	181					0	0	0.014410	0	0
THRAP3	9967	broad.mit.edu	37	1	36748266	36748267	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:36748266_36748267CC>TT	uc001cae.3	+	3	326_327	c.102_103CC>TT	c.(100-105)AGCCGA>AGTTGA	p.R35*	THRAP3_uc001caf.3_Nonsense_Mutation_p.R35*|THRAP3_uc001cag.1_Nonsense_Mutation_p.R35*	NM_005119	NP_005110	Q9Y2W1	TR150_HUMAN	thyroid hormone receptor associated protein 3	35	Arg-rich.|Ser-rich.				androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ATP binding|ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			ovary(5)|lung(3)|breast(1)	9		Myeloproliferative disorder(586;0.0255)|all_neural(195;0.164)				GGTCCCGAAGCCGATCTCTCTC	0.455000			T	USP6	aneurysmal bone cysts								39	57					0	0	0.004672	0	0
RPS8	6202	broad.mit.edu	37	1	45243706	45243706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:45243706G>A	uc001cmi.2	+	5	445	c.422G>A	c.(421-423)CGA>CAA	p.R141Q	SNORD38B_uc001cml.2_5'Flank	NM_001012	NP_001003	P62241	RS8_HUMAN	ribosomal protein S8	141					endocrine pancreas development|maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)|translational elongation|translational termination|viral transcription	cytosolic small ribosomal subunit	protein binding|structural constituent of ribosome			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)					AACAAAAAACGATCTAAAAAA	0.433000													6	15					0	0	0.001168	0	0
C1orf173	127254	broad.mit.edu	37	1	75038844	75038844	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:75038844C>T	uc001dgg.2	-	14	2769	c.2550G>A	c.(2548-2550)AGG>AGA	p.R850R		NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	850	Glu-rich.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						CTTCACCCAGCCTTCTGACCC	0.532000													40	81					0	0	0.014410	0	0
ZNF644	84146	broad.mit.edu	37	1	91403151	91403151	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:91403151G>A	uc001dnw.2	-	4	3721	c.3579C>T	c.(3577-3579)ATC>ATT	p.I1193I	ZNF644_uc001dnv.2_Intron|ZNF644_uc001dnx.2_Intron	NM_201269	NP_958357	Q9H582	ZN644_HUMAN	zinc finger protein 644 isoform 1	1193					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|breast(1)|skin(1)	3		all_lung(203;0.00206)|Lung NSC(277;0.0519)|Lung SC(238;0.101)		all cancers(265;0.00102)|Epithelial(280;0.00766)|KIRC - Kidney renal clear cell carcinoma(1967;0.147)|OV - Ovarian serous cystadenocarcinoma(397;0.173)		TCTGATTATGGATCTTTTGAG	0.373000													24	45					0	0	0.002780	0	0
FNDC7	163479	broad.mit.edu	37	1	109271303	109271303	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:109271303G>A	uc001dvx.2	+	8	1419	c.1419G>A	c.(1417-1419)ATG>ATA	p.M473I	FNDC7_uc010ova.1_Missense_Mutation_p.M240I	NM_001144937	NP_001138409	Q5VTL7	FNDC7_HUMAN	fibronectin type III domain containing 7	474	Fibronectin type-III 6.					extracellular region				ovary(1)|skin(1)	2		all_lung(203;0.00439)|Lung NSC(277;0.00683)|all_epithelial(167;0.00728)		Colorectal(144;0.0314)|Lung(183;0.0924)|COAD - Colon adenocarcinoma(174;0.119)|Epithelial(280;0.173)|all cancers(265;0.244)		CATTCTCCATGATTAATGTGC	0.423000													31	58					0	0	0.003271	0	0
C1orf103	55791	broad.mit.edu	37	1	111494606	111494606	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:111494606A>C	uc001eaa.2	-	2	1156	c.900T>G	c.(898-900)TTT>TTG	p.F300L	C1orf103_uc001dzz.2_Intron|C1orf103_uc001eab.2_Intron|C1orf103_uc001eac.1_Intron	NM_018372	NP_060842	Q5T3J3	LRIF1_HUMAN	receptor-interacting factor 1 isoform 1	300					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nuclear matrix	protein binding				0		all_cancers(81;1.02e-05)|all_epithelial(167;1.87e-05)|all_lung(203;0.000234)|Lung NSC(277;0.000451)		Lung(183;0.0155)|Colorectal(144;0.0314)|all cancers(265;0.082)|LUSC - Lung squamous cell carcinoma(189;0.0826)|Epithelial(280;0.0891)|COAD - Colon adenocarcinoma(174;0.134)		GAGATGGCGTAAAAGGCTGTA	0.338000													31	42					0	0	0.012213	0	0
RSBN1	54665	broad.mit.edu	37	1	114340551	114340551	+	Missense_Mutation	SNP	G	A	A	rs140048385		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:114340551G>A	uc001edq.2	-	2	847	c.811C>T	c.(811-813)CTT>TTT	p.L271F	RSBN1_uc001edr.2_RNA	NM_018364	NP_060834	Q5VWQ0	RSBN1_HUMAN	round spermatid basic protein 1	271						nucleus				ovary(1)	1	Lung SC(450;0.184)	all_cancers(81;3.78e-08)|all_epithelial(167;5.56e-08)|all_lung(203;6.97e-06)|Lung NSC(69;1.18e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		TACATTTTAAGGCGTCTTCCT	0.398000													59	89					0	0	0.014410	0	0
SYCP1	6847	broad.mit.edu	37	1	115487076	115487076	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:115487076G>A	uc001efr.2	+	24	2252	c.2043G>A	c.(2041-2043)GAG>GAA	p.E681E	SYCP1_uc010owt.1_RNA|SYCP1_uc001efq.2_Silent_p.E681E|SYCP1_uc009wgw.2_Silent_p.E681E	NM_003176	NP_003167	Q15431	SYCP1_HUMAN	synaptonemal complex protein 1	681	Nuclear localization signal (Potential).|Potential.				cell division|reciprocal meiotic recombination|spermatogenesis|synaptonemal complex assembly		DNA binding			skin(1)	1	Lung SC(450;0.211)	all_cancers(81;8.65e-08)|all_epithelial(167;3.32e-07)|all_lung(203;6.55e-06)|Lung NSC(69;1.11e-05)|Acute lymphoblastic leukemia(138;0.221)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		TTTTGGAAGAGGTGGGAAAAA	0.264000													18	28					0	0	0.007413	0	0
TBX15	6913	broad.mit.edu	37	1	119469190	119469190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:119469190G>A	uc001ehl.1	-	3	461	c.146C>T	c.(145-147)CCA>CTA	p.P49L		NM_152380	NP_689593	Q96SF7	TBX15_HUMAN	T-box 15	155	T-box.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			large_intestine(1)|pancreas(1)	2	all_neural(166;0.117)	all_cancers(81;0.000692)|all_lung(203;3.05e-06)|Lung NSC(69;2.13e-05)|all_epithelial(167;0.000237)		Lung(183;0.044)|LUSC - Lung squamous cell carcinoma(189;0.141)		CTGCTGATGTGGATCTAGGCC	0.438000													30	34					0	0	0.003271	0	0
GJA5	2702	broad.mit.edu	37	1	147231317	147231317	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:147231317G>A	uc001eps.1	-	2	171	c.30C>T	c.(28-30)TTC>TTT	p.F10F	GJA5_uc001ept.1_Silent_p.F10F	NM_181703	NP_859054	P36382	CXA5_HUMAN	connexin 40	10	Cytoplasmic (Potential).				angiogenesis|cell-cell junction assembly|muscle contraction	integral to membrane				ovary(1)	1	all_hematologic(923;0.0276)		LUSC - Lung squamous cell carcinoma(543;0.202)			CTTCCTCCAGGAAATTTCCCA	0.512000													37	70					0	0	0.006999	0	0
TCHH	7062	broad.mit.edu	37	1	152080284	152080284	+	Silent	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:152080284T>G	uc001ezp.2	-	2	5409	c.5409A>C	c.(5407-5409)CTA>CTC	p.L1803L	TCHH_uc009wne.1_Silent_p.L1803L	NM_007113	NP_009044	Q07283	TRHY_HUMAN	trichohyalin	1803	23 X 26 AA approximate tandem repeats.				keratinization	cytoskeleton	calcium ion binding			ovary(3)|kidney(1)|central_nervous_system(1)	5	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			TCTCCTGGCGTAGCTGTTCCT	0.577000													3	136					0	0	0.004672	0	0
LCE3D	84648	broad.mit.edu	37	1	152552340	152552340	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:152552340T>G	uc001fab.2	-	2	130	c.73A>C	c.(73-75)AGC>CGC	p.S25R		NM_032563	NP_115952	Q9BYE3	LCE3D_HUMAN	late cornified envelope 3D	25					keratinization						0	Hepatocellular(266;0.0877)|all_hematologic(923;0.127)|Melanoma(130;0.242)		LUSC - Lung squamous cell carcinoma(543;0.206)	UCEC - Uterine corpus endometrioid carcinoma (5;0.153)|KIRC - Kidney renal clear cell carcinoma(4;0.0323)|Kidney(5;0.0378)		TGTACTGGGCTCTTTGGGGGA	0.622000													64	103					0	0	0.014410	0	0
ARHGEF2	9181	broad.mit.edu	37	1	155920116	155920116	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:155920116C>T	uc001fmt.2	-	21	2979	c.2861G>A	c.(2860-2862)CGT>CAT	p.R954H	ARHGEF2_uc001fmq.2_Missense_Mutation_p.R192H|ARHGEF2_uc001fmr.2_Missense_Mutation_p.R926H|ARHGEF2_uc001fms.2_Missense_Mutation_p.R953H|ARHGEF2_uc001fmu.2_Missense_Mutation_p.R998H	NM_001162383	NP_001155855	Q92974	ARHG2_HUMAN	Rho/Rac guanine nucleotide exchange factor 2	954					actin filament organization|apoptosis|cell division|cell morphogenesis|induction of apoptosis by extracellular signals|intracellular protein transport|mitosis|negative regulation of microtubule depolymerization|nerve growth factor receptor signaling pathway|positive regulation of NF-kappaB transcription factor activity|regulation of cell proliferation|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|Golgi apparatus|microtubule|ruffle membrane|spindle|tight junction	microtubule binding|Rac GTPase binding|Rac guanyl-nucleotide exchange factor activity|zinc ion binding			ovary(1)	1	Hepatocellular(266;0.133)|all_hematologic(923;0.145)|all_neural(408;0.195)					CGGAGACAGACGGCTGCTACC	0.622000													62	87					0	0	0.014410	0	0
C1orf66	51093	broad.mit.edu	37	1	156704242	156704242	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:156704242G>A	uc001fpu.2	+	6	1712	c.1078G>A	c.(1078-1080)GGC>AGC	p.G360S	C1orf66_uc001fpv.2_Intron	NM_015997	NP_057081	Q96FB5	RRNAD_HUMAN	hypothetical protein LOC51093 isoform 1	360						integral to membrane	rRNA (adenine-N6,N6-)-dimethyltransferase activity				0	all_hematologic(923;0.088)|Hepatocellular(266;0.158)					CCGTCGGCCAGGCGTGCAGGG	0.592000													4	7					0	0	0.001168	0	0
FCRL4	83417	broad.mit.edu	37	1	157556085	157556085	+	Silent	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:157556085A>C	uc001fqw.2	-	6	1144	c.1008T>G	c.(1006-1008)ACT>ACG	p.T336T	FCRL4_uc010phy.1_RNA	NM_031282	NP_112572	Q96PJ5	FCRL4_HUMAN	Fc receptor-like 4 precursor	336	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)|kidney(1)|skin(1)	4	all_hematologic(112;0.0378)|Hepatocellular(266;0.178)	Prostate(1639;0.245)				GGGAACGCTGAGTTTTCCTCC	0.587000													46	57					0	0	0.014410	0	0
FCRL3	115352	broad.mit.edu	37	1	157666002	157666002	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:157666002G>T	uc001frb.2	-	7	1252	c.960C>A	c.(958-960)TTC>TTA	p.F320L	FCRL3_uc001fqx.3_RNA|FCRL3_uc001fqy.3_RNA|FCRL3_uc001fqz.3_Missense_Mutation_p.F320L|FCRL3_uc009wsn.2_RNA|FCRL3_uc009wso.2_RNA|FCRL3_uc001fra.2_Missense_Mutation_p.F46L|FCRL3_uc001frc.1_Missense_Mutation_p.F320L	NM_052939	NP_443171	Q96P31	FCRL3_HUMAN	Fc receptor-like 3 precursor	320	Ig-like C2-type 4.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(3)|breast(1)	4	all_hematologic(112;0.0378)					TGTGCCAGGAGAATGTGACAG	0.517000													50	70					3.07002e-29	3.18944e-29	0.014410	1	0
MAEL	84944	broad.mit.edu	37	1	166974589	166974589	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:166974589G>A	uc001gdy.1	+	8	871	c.800G>A	c.(799-801)CGA>CAA	p.R267Q	MAEL_uc001gdz.1_Missense_Mutation_p.R236Q|MAEL_uc009wvf.1_RNA	NM_032858	NP_116247	Q96JY0	MAEL_HUMAN	maelstrom homolog	267					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|multicellular organismal development|piRNA metabolic process|spermatogenesis	piP-body	DNA binding			skin(1)	1						ACTTGGATTCGAAGCCTCCTA	0.403000													24	31					0	0	0.010818	0	0
POU2F1	5451	broad.mit.edu	37	1	167343506	167343506	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:167343506C>T	uc001gec.2	+	7	657	c.495C>T	c.(493-495)CCC>CCT	p.P165P	POU2F1_uc010plg.1_RNA|POU2F1_uc001ged.2_Silent_p.P163P|POU2F1_uc001gee.2_Silent_p.P165P|POU2F1_uc010plh.1_Intron|POU2F1_uc001gef.2_Silent_p.P177P|POU2F1_uc001geg.2_Silent_p.P63P	NM_002697	NP_002688	P14859	PO2F1_HUMAN	POU class 2 homeobox 1	165					negative regulation of transcription, DNA-dependent|transcription from RNA polymerase III promoter	nucleoplasm	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity	p.P165S(1)		central_nervous_system(2)|skin(2)|breast(1)	5						CGCAGATCCCCCTGTCTCAGC	0.562000													17	20					0	0	0.012319	0	0
SCYL3	57147	broad.mit.edu	37	1	169823502	169823502	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:169823502G>A	uc001ggs.2	-	13	2276	c.2078C>T	c.(2077-2079)CCT>CTT	p.P693L	SCYL3_uc010plw.1_Missense_Mutation_p.P285L|SCYL3_uc001ggt.2_Missense_Mutation_p.P639L|SCYL3_uc001ggu.2_RNA	NM_181093	NP_851607	Q8IZE3	PACE1_HUMAN	SCY1-like 3 isoform 2	693	Interaction with EZR.				cell migration	Golgi apparatus|lamellipodium	ATP binding|protein binding|protein kinase activity			ovary(1)|skin(1)	2	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					CCTCAGTTCAGGTAATATAAG	0.398000													35	53					0	0	0.004878	0	0
ASTN1	460	broad.mit.edu	37	1	176853524	176853524	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:176853524G>A	uc001glc.2	-	19	3389	c.3177C>T	c.(3175-3177)CTC>CTT	p.L1059L	ASTN1_uc001glb.1_Silent_p.L1059L|ASTN1_uc001gld.1_Silent_p.L1059L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	1067	Fibronectin type-III 1.				cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						TCTCTTGACGGAGGAGGTAAT	0.517000													60	60					0	0	0.014410	0	0
CEP350	9857	broad.mit.edu	37	1	180056804	180056804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:180056804C>T	uc001gnt.2	+	32	6760	c.6377C>T	c.(6376-6378)TCC>TTC	p.S2126F	CEP350_uc009wxl.2_Missense_Mutation_p.S2125F|CEP350_uc001gnv.2_Missense_Mutation_p.S261F|CEP350_uc001gnw.1_5'UTR	NM_014810	NP_055625	Q5VT06	CE350_HUMAN	centrosome-associated protein 350	2126						centrosome|nucleus|spindle				ovary(4)	4						AAAACGCTCTCCTCAGCTTCT	0.378000													4	6					0	0	0.000602	0	0
CACNA1E	777	broad.mit.edu	37	1	181727126	181727126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:181727126G>A	uc001gow.2	+	31	4538	c.4373G>A	c.(4372-4374)CGC>CAC	p.R1458H	CACNA1E_uc009wxs.2_Missense_Mutation_p.R1346H|CACNA1E_uc001gox.1_Missense_Mutation_p.R684H|CACNA1E_uc009wxt.2_Missense_Mutation_p.R684H	NM_000721	NP_000712	Q15878	CAC1E_HUMAN	calcium channel, voltage-dependent, R type,	1458	Cytoplasmic (Potential).				energy reserve metabolic process|membrane depolarization|synaptic transmission	voltage-gated calcium channel complex	voltage-gated calcium channel activity			ovary(3)|central_nervous_system(2)|pancreas(1)	6						CCTCTCACCCGCTACATGCCG	0.512000													12	165					0	0	0.003163	0	0
LAMC2	3918	broad.mit.edu	37	1	183191251	183191251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:183191251G>A	uc001gqa.2	+	6	982	c.668G>A	c.(667-669)CGA>CAA	p.R223Q	LAMC2_uc001gpz.3_Missense_Mutation_p.R223Q|LAMC2_uc010poa.1_5'UTR	NM_005562	NP_005553	Q13753	LAMC2_HUMAN	laminin, gamma 2 isoform a precursor	223	Laminin IV type A.				cell adhesion|epidermis development|hemidesmosome assembly		heparin binding			skin(2)|ovary(1)	3						GCTGTCCAACGAAATGGGTCT	0.453000													64	91					0	0	0.014410	0	0
FAM5C	339479	broad.mit.edu	37	1	190067660	190067660	+	Missense_Mutation	SNP	C	T	T	rs139472620		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:190067660C>T	uc001gse.1	-	8	2021	c.1789G>A	c.(1789-1791)GAG>AAG	p.E597K	FAM5C_uc010pot.1_Missense_Mutation_p.E495K	NM_199051	NP_950252	Q76B58	FAM5C_HUMAN	family with sequence similarity 5, member C	597						extracellular region				lung(2)|ovary(1)|kidney(1)|skin(1)	5	Prostate(682;0.198)					TTAGTCCGCTCCCAGTCTGGA	0.478000													128	182					0	0	0.014410	0	0
CR2	1380	broad.mit.edu	37	1	207651278	207651278	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:207651278T>C	uc001hfw.2	+	15	2868	c.2774T>C	c.(2773-2775)CTG>CCG	p.L925P	CR2_uc001hfv.2_Missense_Mutation_p.L984P|CR2_uc009xch.2_Missense_Mutation_p.L863P	NM_001877	NP_001868	P20023	CR2_HUMAN	complement component (3d/Epstein Barr virus)	925	Sushi 15.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to membrane|plasma membrane	complement receptor activity|protein homodimerization activity			upper_aerodigestive_tract(3)|skin(3)|urinary_tract(1)|ovary(1)	8						CAGAAAGGGCTGGAACCAAGG	0.438000													26	27					0	0	0.012213	0	0
CR1	1378	broad.mit.edu	37	1	207785063	207785063	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:207785063C>T	uc001hfy.2	+	30	5127	c.4987C>T	c.(4987-4989)CTA>TTA	p.L1663L	CR1_uc001hfx.2_Silent_p.L2113L	NM_000573	NP_000564	P17927	CR1_HUMAN	complement receptor 1 isoform F precursor	1663	Sushi 26.|Extracellular (Potential).				complement activation, classical pathway|innate immune response	integral to plasma membrane	complement receptor activity			ovary(3)	3						TGAGCATACCCTAAGCCATCA	0.522000													67	109					0	0	0.014410	0	0
USH2A	7399	broad.mit.edu	37	1	216062298	216062298	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:216062298G>A	uc001hku.1	-	41	8080	c.7693C>T	c.(7693-7695)CAT>TAT	p.H2565Y		NM_206933	NP_996816	O75445	USH2A_HUMAN	usherin isoform B	2565	Fibronectin type-III 12.|Extracellular (Potential).				maintenance of organ identity|photoreceptor cell maintenance|response to stimulus|sensory perception of sound	basement membrane|cytoplasm|integral to membrane|stereocilium membrane	collagen binding			ovary(20)|upper_aerodigestive_tract(2)|skin(2)|kidney(1)|central_nervous_system(1)	26				OV - Ovarian serous cystadenocarcinoma(81;0.0547)|all cancers(67;0.0875)		ATGTTATAATGGGTAATAACC	0.418000										HNSCC(13;0.011)			57	68					0	0	0.014410	0	0
ENAH	55740	broad.mit.edu	37	1	225685482	225685482	+	Missense_Mutation	SNP	C	A	A	rs114476062	byFrequency	TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:225685482C>A	uc001hpc.1	-	15	2224	c.1771G>T	c.(1771-1773)GCA>TCA	p.A591S	ENAH_uc001hpd.1_Missense_Mutation_p.A570S|ENAH_uc001hpb.1_Missense_Mutation_p.A210S	NM_001008493	NP_001008493	Q8N8S7	ENAH_HUMAN	enabled homolog isoform a	591					axon guidance|intracellular transport|T cell receptor signaling pathway	cytosol|filopodium|focal adhesion|lamellipodium|synapse	actin binding|SH3 domain binding|WW domain binding			ovary(1)|skin(1)	2	Breast(184;0.206)			GBM - Glioblastoma multiforme(131;0.19)		TTCCTCTATGCAGTATTTGAC	0.353000													10	66					7.93312e-07	8.13011e-07	0.002450	1	0
OBSCN	84033	broad.mit.edu	37	1	228505387	228505387	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:228505387G>A	uc009xez.1	+	52	13828	c.13784G>A	c.(13783-13785)CGT>CAT	p.R4595H	OBSCN_uc001hsn.2_Missense_Mutation_p.R4595H	NM_001098623	NP_001092093	Q5VST9	OBSCN_HUMAN	obscurin, cytoskeletal calmodulin and	4595	Fibronectin type-III 3.				apoptosis|cell differentiation|induction of apoptosis by extracellular signals|multicellular organismal development|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol|M band|Z disc	ATP binding|metal ion binding|protein binding|protein serine/threonine kinase activity|protein tyrosine kinase activity|Rho guanyl-nucleotide exchange factor activity|structural constituent of muscle|titin binding			stomach(8)|large_intestine(7)|breast(5)|ovary(4)|skin(2)|central_nervous_system(1)|pancreas(1)	28		Prostate(94;0.0405)				TACCGCTTCCGTGTGGCAGCT	0.672000													37	59					0	0	0.014410	0	0
RYR2	6262	broad.mit.edu	37	1	237791228	237791228	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:237791228G>A	uc001hyl.1	+	41	6408	c.6288G>A	c.(6286-6288)GGG>GGA	p.G2096G		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2096	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ACGGCATTGGGGGTCTTGTTC	0.572000													15	22					0	0	0.006122	0	0
RYR2	6262	broad.mit.edu	37	1	237794808	237794808	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr1:237794808C>T	uc001hyl.1	+	42	6642	c.6522C>T	c.(6520-6522)GTC>GTT	p.V2174V		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	2174	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			TGATGGAGGTCATGGTGAACG	0.433000													18	30					0	0	0.002780	0	0
DIP2C	22982	broad.mit.edu	37	10	395372	395372	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:395372G>A	uc001ifp.2	-	25	3098	c.3008C>T	c.(3007-3009)ACC>ATC	p.T1003I	DIP2C_uc009xhi.1_Missense_Mutation_p.T389I	NM_014974	NP_055789	Q9Y2E4	DIP2C_HUMAN	DIP2 disco-interacting protein 2 homolog C	1003						nucleus	catalytic activity|transcription factor binding			breast(4)|ovary(2)|large_intestine(1)	7		all_cancers(4;0.00336)|all_lung(4;0.00732)|Lung NSC(4;0.00785)|all_epithelial(10;0.0159)|Colorectal(49;0.235)	OV - Ovarian serous cystadenocarcinoma(33;0.136)	Epithelial(11;0.0123)|all cancers(11;0.0467)|Lung(33;0.0864)|OV - Ovarian serous cystadenocarcinoma(14;0.106)		CTGCACGCAGGTCAGCGAGTT	0.572000													26	8					0	0	0.007291	0	0
UCMA	221044	broad.mit.edu	37	10	13275623	13275623	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:13275623C>T	uc001imd.2	-	3	208	c.135G>A	c.(133-135)CAG>CAA	p.Q45Q		NM_145314	NP_660357	Q8WVF2	UCMA_HUMAN	upper zone of growth plate and cartilage matrix	45						proteinaceous extracellular matrix					0						TGAAAATCTTCTGTTTTGCAT	0.597000													42	17					0	0	0.014410	0	0
ZNF239	8187	broad.mit.edu	37	10	44052281	44052281	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:44052281G>A	uc001jaw.3	-	2	1900	c.1247C>T	c.(1246-1248)TCC>TTC	p.S416F	ZNF239_uc001jax.3_Missense_Mutation_p.S416F|ZNF239_uc009xmj.2_Missense_Mutation_p.S416F|ZNF239_uc009xmk.2_Missense_Mutation_p.S416F	NM_005674	NP_005665	Q16600	ZN239_HUMAN	zinc finger protein 239	416	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|RNA binding|zinc ion binding				0						GAGGAGTTTGGAACTCTGGCT	0.532000													20	10					0	0	0.003330	0	0
OGDHL	55753	broad.mit.edu	37	10	50952707	50952707	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:50952707G>A	uc001jie.2	-	13	1863	c.1721C>T	c.(1720-1722)TCC>TTC	p.S574F	OGDHL_uc009xog.2_Missense_Mutation_p.S601F|OGDHL_uc010qgt.1_Missense_Mutation_p.S517F|OGDHL_uc010qgu.1_Missense_Mutation_p.S365F|OGDHL_uc009xoh.2_Missense_Mutation_p.S365F	NM_018245	NP_060715	Q9ULD0	OGDHL_HUMAN	oxoglutarate dehydrogenase-like isoform a	574					glycolysis	mitochondrial matrix	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			pancreas(1)	1						AGGCCAGGGGGAGTCCAACCA	0.547000													36	8					0	0	0.009718	0	0
ANK3	288	broad.mit.edu	37	10	61834107	61834107	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:61834107G>A	uc001jky.2	-	37	6724	c.6532C>T	c.(6532-6534)CCC>TCC	p.P2178S	ANK3_uc001jkw.2_Intron|ANK3_uc009xpa.2_Intron|ANK3_uc001jkx.2_Intron|ANK3_uc010qih.1_Intron|ANK3_uc001jkz.3_Intron|ANK3_uc001jkv.2_Intron|ANK3_uc009xpb.1_Intron	NM_020987	NP_066267	Q12955	ANK3_HUMAN	ankyrin 3 isoform 1	2178					establishment of protein localization|signal transduction	basolateral plasma membrane|cytoplasm|cytoskeleton	protein binding			skin(9)|ovary(6)|pancreas(2)|central_nervous_system(2)	19						CCAGCTGAGGGATCATAGCTC	0.473000													35	13					0	0	0.003755	0	0
CYP2C18	1562	broad.mit.edu	37	10	96454787	96454787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:96454787G>A	uc001kjv.3	+	4	921	c.595G>A	c.(595-597)GAA>AAA	p.E199K	CYP2C18_uc001kjw.3_Missense_Mutation_p.E199K|CYP2C19_uc009xus.1_Intron|CYP2C19_uc010qny.1_5'UTR	NM_000772	NP_000763	P33260	CP2CI_HUMAN	cytochrome P450 family 2 subfamily C polypeptide	199					xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(3)|lung(1)|skin(1)	5		Colorectal(252;0.09)		all cancers(201;2.8e-06)|KIRC - Kidney renal clear cell carcinoma(50;0.0646)|Kidney(138;0.0805)		TAACTTGATGGAAAAATTCAA	0.388000													21	8					0	0	0.012319	0	0
PSD	5662	broad.mit.edu	37	10	104174701	104174701	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:104174701C>T	uc001kvg.1	-	4	1570	c.1043G>A	c.(1042-1044)GGC>GAC	p.G348D	PSD_uc001kvh.1_5'UTR|PSD_uc009xxd.1_Missense_Mutation_p.G348D	NM_002779	NP_002770	A5PKW4	PSD1_HUMAN	pleckstrin and Sec7 domain containing	348					regulation of ARF protein signal transduction	cytoplasm|plasma membrane|ruffle	ARF guanyl-nucleotide exchange factor activity|signal transducer activity			breast(2)|urinary_tract(1)	3				Epithelial(162;1.27e-08)|all cancers(201;2.85e-07)		ATCCTCATTGCCACTGCCGAG	0.652000													35	12					0	0	0.006999	0	0
TACC2	10579	broad.mit.edu	37	10	123842764	123842764	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:123842764C>T	uc001lfv.2	+	4	1109	c.749C>T	c.(748-750)CCT>CTT	p.P250L	TACC2_uc001lfw.2_Intron|TACC2_uc009xzx.2_Missense_Mutation_p.P250L|TACC2_uc010qtv.1_Missense_Mutation_p.P250L	NM_206862	NP_996744	O95359	TACC2_HUMAN	transforming, acidic coiled-coil containing	250						microtubule organizing center|nucleus	nuclear hormone receptor binding			ovary(4)|breast(3)|skin(2)|central_nervous_system(1)	10		all_neural(114;0.0656)|Lung NSC(174;0.136)|all_lung(145;0.17)|Breast(234;0.197)				CAAGTGACCCCTGAGGCCCCT	0.627000													26	2					0	0	0.006320	0	0
MGMT	4255	broad.mit.edu	37	10	131506200	131506200	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr10:131506200C>T	uc001lkh.2	+	3	286	c.260C>T	c.(259-261)CCG>CTG	p.P87L		NM_002412	NP_002403	P16455	MGMT_HUMAN	O-6-methylguanine-DNA methyltransferase	56										ovary(1)|breast(1)	2		all_cancers(35;9.44e-09)|all_epithelial(44;6.98e-08)|Lung NSC(174;0.0157)|all_lung(145;0.0201)|all_neural(114;0.0732)|Colorectal(57;0.0792)|Breast(234;0.167)		OV - Ovarian serous cystadenocarcinoma(35;0.00291)		CTCGGAGGTCCGGAGCCCCTG	0.612000								Direct_reversal_of_damage					22	7					0	0	0.014323	0	0
MUC2	4583	broad.mit.edu	37	11	1096345	1096345	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:1096345G>A	uc001lsx.1	+	37	13483	c.13456G>A	c.(13456-13458)GAC>AAC	p.D4486N		NM_002457	NP_002448	Q02817	MUC2_HUMAN	mucin 2 precursor	4486	VWFD 4.	Cleavage; by autolysis; in vitro.				inner mucus layer|outer mucus layer	protein binding			lung(1)|breast(1)	2		all_cancers(49;1.08e-07)|all_epithelial(84;5.08e-05)|Breast(177;0.000307)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.191)		BRCA - Breast invasive adenocarcinoma(625;0.000207)|Lung(200;0.0576)|LUSC - Lung squamous cell carcinoma(625;0.0703)	Pranlukast(DB01411)	GGGCTGGGGCGACCCGCACTA	0.662000													19	36					0	0	0.012319	0	0
OR52J3	119679	broad.mit.edu	37	11	5068426	5068426	+	Missense_Mutation	SNP	G	A	A	rs146686931		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:5068426G>A	uc010qyv.1	+	1	671	c.671G>A	c.(670-672)CGT>CAT	p.R224H		NM_001001916	NP_001001916	Q8NH60	O52J3_HUMAN	olfactory receptor, family 52, subfamily J,	224	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|lung(1)|skin(1)	3		Medulloblastoma(188;0.00131)|all_neural(188;0.0189)|Breast(177;0.0204)		Epithelial(150;9.29e-10)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.19)		TACATTCTCCGTGCTGTCTTC	0.448000													55	69					0	0	0.014410	0	0
UBQLNL	143630	broad.mit.edu	37	11	5537331	5537331	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:5537331C>T	uc001maz.3	-	1	626	c.341G>A	c.(340-342)CGG>CAG	p.R114Q	HBG2_uc001mak.1_Intron	NM_145053	NP_659490	Q8IYU4	UBQLN_HUMAN	ubiquilin-like	114										large_intestine(2)|skin(1)	3		Medulloblastoma(188;0.00225)|Breast(177;0.0155)|all_neural(188;0.0212)		Epithelial(150;1.92e-09)|BRCA - Breast invasive adenocarcinoma(625;0.136)		TGGCAGGTCCCGGAAGGAATG	0.542000													15	85					0	0	0.004990	0	0
OR52B6	340980	broad.mit.edu	37	11	5602625	5602625	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:5602625C>T	uc010qzi.1	+	1	519	c.519C>T	c.(517-519)ATC>ATT	p.I173I	HBG2_uc001mak.1_Intron	NM_001005162	NP_001005162	Q8NGF0	O52B6_HUMAN	olfactory receptor, family 52, subfamily B,	173	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Medulloblastoma(188;0.00225)|Breast(177;0.0204)|all_neural(188;0.0212)		Epithelial(150;3.56e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)		ACAGCTTCATCATTATGTTTC	0.498000													117	154					0	0	0.014410	0	0
OR52N5	390075	broad.mit.edu	37	11	5799168	5799168	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:5799168C>T	uc010qzn.1	-	1	697	c.697G>A	c.(697-699)GCA>ACA	p.A233T	TRIM5_uc001mbq.1_Intron|TRIM22_uc009yet.1_Intron	NM_001001922	NP_001001922	Q8NH56	O52N5_HUMAN	olfactory receptor, family 52, subfamily N,	233	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)	2		Medulloblastoma(188;0.0075)|all_neural(188;0.0577)|Breast(177;0.086)		Epithelial(150;3.05e-11)|LUSC - Lung squamous cell carcinoma(625;0.112)|BRCA - Breast invasive adenocarcinoma(625;0.135)|Lung(200;0.195)		CTGATCGCTGCCTTGAGGATC	0.443000													22	39					0	0	0.003330	0	0
ZNF215	7762	broad.mit.edu	37	11	6964314	6964314	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:6964314G>A	uc001mey.2	+	5	1072	c.484G>A	c.(484-486)GAA>AAA	p.E162K	ZNF215_uc010raw.1_Intron|ZNF215_uc010rax.1_Intron|ZNF215_uc001mez.1_Missense_Mutation_p.E162K	NM_013250	NP_037382	Q9UL58	ZN215_HUMAN	zinc finger protein 215	162					viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding				0				Epithelial(150;6.33e-08)|BRCA - Breast invasive adenocarcinoma(625;0.134)		AATGTTTTAGGAACCAGTGAC	0.438000													49	73					0	0	0.014410	0	0
INSC	387755	broad.mit.edu	37	11	15260488	15260488	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:15260488C>T	uc001mly.2	+	11	1448	c.1402C>T	c.(1402-1404)CTG>TTG	p.L468L	INSC_uc001mlz.2_Silent_p.L421L|INSC_uc001mma.2_Silent_p.L421L|INSC_uc010rcs.1_Silent_p.L456L|INSC_uc001mmb.2_Silent_p.L421L|INSC_uc001mmc.2_Silent_p.L379L	NM_001031853	NP_001027024	Q1MX18	INSC_HUMAN	inscuteable isoform a	468					cell differentiation|nervous system development	cytoplasm	binding			upper_aerodigestive_tract(2)|ovary(2)|central_nervous_system(1)	5						CATGGGCATGCTGTCTGAAAA	0.592000													24	33					0	0	0.006320	0	0
SLC17A6	57084	broad.mit.edu	37	11	22391586	22391586	+	Missense_Mutation	SNP	A	T	T	rs140368718		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:22391586A>T	uc001mqk.2	+	8	1306	c.893A>T	c.(892-894)AAA>ATA	p.K298I		NM_020346	NP_065079	Q9P2U8	VGLU2_HUMAN	solute carrier family 17 (sodium-dependent	298	Cytoplasmic (Potential).				sodium ion transport	cell junction|integral to membrane|synaptic vesicle membrane|synaptosome	L-glutamate transmembrane transporter activity|symporter activity			ovary(3)|breast(1)	4						GAATTTCAGAAATTCAAGACT	0.333000													9	7					0	0	0.010729	0	0
MUC15	143662	broad.mit.edu	37	11	26586930	26586930	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:26586930T>A	uc001mqx.2	-	2	742	c.476A>T	c.(475-477)AAA>ATA	p.K159I	ANO3_uc010rdr.1_Intron|ANO3_uc001mqt.3_Intron|ANO3_uc010rds.1_Intron|ANO3_uc010rdt.1_Intron|MUC15_uc001mqw.2_Missense_Mutation_p.K186I|MUC15_uc001mqy.2_Missense_Mutation_p.K186I	NM_145650	NP_663625	Q8N387	MUC15_HUMAN	mucin 15 isoform b	159	Extracellular (Potential).					extracellular region|integral to membrane|plasma membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						ATCAGGAGTTTTCACGGTGTC	0.453000													34	34					0	0	0.013726	0	0
NR1H3	10062	broad.mit.edu	37	11	47283529	47283529	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:47283529C>T	uc009ylm.2	+	7	1169	c.948C>T	c.(946-948)CTC>CTT	p.L316L	NR1H3_uc009yll.1_Silent_p.L322L|NR1H3_uc010rhk.1_Silent_p.L322L|NR1H3_uc001nek.2_Silent_p.L271L|NR1H3_uc001nej.2_Silent_p.L256L|NR1H3_uc001nel.2_Silent_p.L335L|NR1H3_uc001nen.3_Silent_p.L256L|NR1H3_uc001nem.2_Silent_p.L316L|NR1H3_uc001nep.2_Silent_p.L165L	NM_005693	NP_005684	Q13133	NR1H3_HUMAN	nuclear receptor subfamily 1, group H, member 3	316	Ligand-binding (Potential).				apoptotic cell clearance|cellular response to lipopolysaccharide|cholesterol homeostasis|negative regulation of cholesterol storage|negative regulation of inflammatory response|negative regulation of interferon-gamma-mediated signaling pathway|negative regulation of lipid transport|negative regulation of macrophage activation|negative regulation of pancreatic juice secretion|negative regulation of pinocytosis|negative regulation of secretion of lysosomal enzymes|negative regulation of transcription from RNA polymerase II promoter|positive regulation of cellular protein metabolic process|positive regulation of cholesterol efflux|positive regulation of cholesterol homeostasis|positive regulation of fatty acid biosynthetic process|positive regulation of lipoprotein lipase activity|positive regulation of receptor biosynthetic process|positive regulation of toll-like receptor 4 signaling pathway|positive regulation of transcription from RNA polymerase II promoter|positive regulation of triglyceride biosynthetic process|regulation of circadian rhythm|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|response to progesterone stimulus|triglyceride homeostasis	nuclear chromatin|nucleoplasm	cholesterol binding|steroid hormone receptor activity|sterol response element binding|transcription coactivator activity|zinc ion binding			ovary(2)|lung(1)	3						TCACCTTCCTCAAGGATTTCA	0.493000													82	129					0	0	0.014410	0	0
OR5T2	219464	broad.mit.edu	37	11	55999715	55999715	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:55999715A>T	uc010rjc.1	-	1	947	c.947T>A	c.(946-948)TTT>TAT	p.F316Y		NM_001004746	NP_001004746	Q8NGG2	OR5T2_HUMAN	olfactory receptor, family 5, subfamily T,	316	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00448)					AATGGTGTAAAATATTGACAC	0.383000													71	88					0	0	0.014410	0	0
OR5M10	390167	broad.mit.edu	37	11	56344433	56344433	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:56344433G>A	uc001niz.1	-	1	765	c.765C>T	c.(763-765)CTC>CTT	p.L255L		NM_001004741	NP_001004741	Q6IEU7	OR5MA_HUMAN	olfactory receptor, family 5, subfamily M,	255	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACATGCAGAAGAGGGTTCCAT	0.448000													52	77					0	0	0.014410	0	0
EML3	256364	broad.mit.edu	37	11	62373339	62373339	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:62373339G>A	uc001ntu.1	-	14	2078	c.1770C>T	c.(1768-1770)TCC>TCT	p.S590S	EML3_uc001ntr.1_Silent_p.S562S|EML3_uc001nts.1_Silent_p.S562S|EML3_uc001ntt.1_Silent_p.S474S|EML3_uc010rly.1_Silent_p.S590S	NM_153265	NP_694997	Q32P44	EMAL3_HUMAN	echinoderm microtubule associated protein like	590						cytoplasm|microtubule	protein binding			ovary(1)	1						GGATTACAGGGGAGAAGCCCT	0.617000													44	57					0	0	0.014410	0	0
SLC22A10	387775	broad.mit.edu	37	11	63072305	63072305	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:63072305C>T	uc009yor.2	+	9	1750	c.1542C>T	c.(1540-1542)CTC>CTT	p.L514L	SLC22A10_uc010rmo.1_Intron|SLC22A10_uc001nwu.3_RNA|SLC22A10_uc010rmp.1_3'UTR	NM_001039752	NP_001034841	Q63ZE4	S22AA_HUMAN	solute carrier family 22, member 10	514	Helical; (Potential).					integral to membrane	transmembrane transporter activity			ovary(2)	2						TTGTCTTCCTCCTACCAGAAA	0.448000													38	71					0	0	0.014410	0	0
LGALS12	85329	broad.mit.edu	37	11	63283073	63283073	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:63283073C>T	uc001nxa.2	+	8	1093	c.752C>T	c.(751-753)CCT>CTT	p.P251L	LGALS12_uc001nxb.2_Missense_Mutation_p.P242L|LGALS12_uc001nxc.2_Missense_Mutation_p.P252L|LGALS12_uc001nxd.2_Missense_Mutation_p.P190L|LGALS12_uc001nxe.2_Missense_Mutation_p.P181L|LGALS12_uc009yot.2_Missense_Mutation_p.P211L	NM_033101	NP_149092	Q96DT0	LEG12_HUMAN	lectin, galactoside-binding, soluble, 12 isoform	251	Galectin 2.				apoptosis|induction of apoptosis by intracellular signals	nucleus	lactose binding			ovary(2)	2						GCCCATGCTCCTGTGACACTC	0.597000													49	56					0	0	0.014410	0	0
ADRBK1	156	broad.mit.edu	37	11	67050673	67050674	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:67050673_67050674CC>TT	uc009yrn.1	+	15	1568_1569	c.1302_1303CC>TT	c.(1300-1305)AACCGG>AATTGG	p.R435W	ADRBK1_uc009yrm.1_Intron	NM_001619	NP_001610	P25098	ARBK1_HUMAN	beta-adrenergic receptor kinase 1	435	Protein kinase.				activation of phospholipase C activity|cardiac muscle contraction|desensitization of G-protein coupled receptor protein signaling pathway|muscarinic acetylcholine receptor signaling pathway|negative regulation of striated muscle contraction|negative regulation of the force of heart contraction by chemical signal|nerve growth factor receptor signaling pathway|peptidyl-serine phosphorylation|positive regulation of catecholamine secretion|tachykinin receptor signaling pathway	cytosol|soluble fraction	alpha-2A adrenergic receptor binding|ATP binding|beta-adrenergic receptor kinase activity|Edg-2 lysophosphatidic acid receptor binding|G-protein coupled receptor kinase activity|signal transducer activity			large_intestine(1)	1			BRCA - Breast invasive adenocarcinoma(15;2.26e-06)		Adenosine triphosphate(DB00171)	GGGATGTCAACCGGAGATTGGG	0.634000													55	107					0	0	0.004672	0	0
SAPS3	55291	broad.mit.edu	37	11	68331883	68331883	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:68331883C>T	uc001onw.2	+	9	1225	c.958C>T	c.(958-960)CTG>TTG	p.L320L	SAPS3_uc001onv.2_Silent_p.L320L|SAPS3_uc001ony.3_Silent_p.L320L|SAPS3_uc001onx.2_Silent_p.L320L|SAPS3_uc009ysh.2_Silent_p.L320L|SAPS3_uc001onu.2_Silent_p.L320L|SAPS3_uc010rqc.1_Intron|SAPS3_uc010rqd.1_Silent_p.L27L	NM_001164161	NP_001157633	Q5H9R7	PP6R3_HUMAN	SAPS domain family, member 3 isoform 6	320					regulation of phosphoprotein phosphatase activity	cytoplasm|nucleus	protein phosphatase binding				0			LUAD - Lung adenocarcinoma(13;0.102)			TCATGAACTCCTGCTGGAGCC	0.483000													67	86					0	0	0.014410	0	0
RSF1	51773	broad.mit.edu	37	11	77409601	77409601	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:77409601A>T	uc001oyn.2	-	7	2766	c.2646T>A	c.(2644-2646)AGT>AGA	p.S882R	RSF1_uc001oym.2_Missense_Mutation_p.S630R	NM_016578	NP_057662	Q96T23	RSF1_HUMAN	remodeling and spacing factor 1	882	Poly-Glu.				CenH3-containing nucleosome assembly at centromere|negative regulation of DNA binding|negative regulation of transcription, DNA-dependent|nucleosome positioning|positive regulation of transcription, DNA-dependent|positive regulation of viral transcription|transcription initiation, DNA-dependent	RSF complex	histone binding|protein binding|zinc ion binding			ovary(2)|central_nervous_system(2)	4	all_cancers(14;1.54e-17)|all_epithelial(13;4.06e-20)|Ovarian(111;0.152)		Epithelial(5;3e-50)|all cancers(3;6.37e-47)|BRCA - Breast invasive adenocarcinoma(5;9.82e-31)			TGGCTTCTTCACTTTCCTTTT	0.428000													60	83					0	0	0.014410	0	0
PGR	5241	broad.mit.edu	37	11	100933232	100933232	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:100933232G>A	uc001pgh.2	-	4	2901	c.2158C>T	c.(2158-2160)CAA>TAA	p.Q720*	PGR_uc001pgg.2_Nonsense_Mutation_p.Q101*|PGR_uc001pgi.2_Intron|PGR_uc009yww.1_Intron|PGR_uc001pgj.2_RNA|PGR_uc009ywx.1_RNA	NM_000926	NP_000917	P06401	PRGR_HUMAN	progesterone receptor	720	Steroid-binding.				cell-cell signaling|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor	cytoplasm|nucleoplasm	enzyme binding|receptor binding|sequence-specific DNA binding transcription factor activity|steroid binding|steroid hormone receptor activity|zinc ion binding			lung(1)|liver(1)|central_nervous_system(1)|pancreas(1)	4		Acute lymphoblastic leukemia(157;0.000885)|all_hematologic(158;0.014)		LUSC - Lung squamous cell carcinoma(1;0.0387)|BRCA - Breast invasive adenocarcinoma(274;0.124)|OV - Ovarian serous cystadenocarcinoma(223;0.148)|Lung(307;0.164)	Desogestrel(DB00304)|Drospirenone(DB01395)|Dydrogesterone(DB00378)|Ethynodiol Diacetate(DB00823)|Etonogestrel(DB00294)|Levonorgestrel(DB00367)|Medroxyprogesterone(DB00603)|Megestrol(DB00351)|Mifepristone(DB00834)|Norethindrone(DB00717)|Norgestimate(DB00957)|Norgestrel(DB00506)|Progesterone(DB00396)	TCGCCTAGTTGATTAAGACTT	0.363000													59	92					0	0	0.014410	0	0
DDI1	414301	broad.mit.edu	37	11	103908172	103908172	+	Missense_Mutation	SNP	C	T	T	rs114077203	byFrequency	TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:103908172C>T	uc001phr.2	+	1	865	c.622C>T	c.(622-624)CGG>TGG	p.R208W	PDGFD_uc001php.2_Intron|PDGFD_uc001phq.2_Intron	NM_001001711	NP_001001711	Q8WTU0	DDI1_HUMAN	DDI1, DNA-damage inducible 1, homolog 1	208					proteolysis		aspartic-type endopeptidase activity			large_intestine(3)|upper_aerodigestive_tract(1)|pancreas(1)	5		Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.00648)|Melanoma(852;0.055)|all_neural(303;0.164)		BRCA - Breast invasive adenocarcinoma(274;0.00128)|Epithelial(105;0.0631)|all cancers(92;0.169)		CCCACTGGATCGGGAAGCTCA	0.493000													47	47					0	0	0.014410	0	0
RDX	5962	broad.mit.edu	37	11	110104105	110104105	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:110104105T>C	uc001pku.2	-	13	1754	c.1444A>G	c.(1444-1446)ACA>GCA	p.T482A	RDX_uc009yxx.1_RNA|RDX_uc009yxy.2_Missense_Mutation_p.T482A|RDX_uc009yxz.2_Missense_Mutation_p.T135A|RDX_uc009yya.2_Intron|RDX_uc001pks.2_Missense_Mutation_p.T16A|RDX_uc001pkt.2_Missense_Mutation_p.T136A|RDX_uc010rwe.1_Missense_Mutation_p.T346A	NM_002906	NP_002897	P35241	RADI_HUMAN	radixin	482	Glu-rich.				actin filament capping	cleavage furrow|cytoskeleton|extrinsic to membrane|Golgi apparatus|nucleolus|plasma membrane	actin binding				0		all_cancers(61;7.18e-13)|all_epithelial(67;2.61e-07)|Melanoma(852;1.46e-05)|all_hematologic(158;3.66e-05)|Acute lymphoblastic leukemia(157;3.95e-05)|all_neural(223;0.0281)|Medulloblastoma(222;0.0425)|Breast(348;0.0544)		Epithelial(105;1.13e-06)|BRCA - Breast invasive adenocarcinoma(274;9.75e-06)|all cancers(92;5.9e-05)|OV - Ovarian serous cystadenocarcinoma(223;0.0248)		TCGTTTTCTGTTGGAGGAATG	0.458000													122	126					0	0	0.014410	0	0
MLL	4297	broad.mit.edu	37	11	118344458	118344458	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:118344458C>T	uc001pta.2	+	3	2607	c.2584C>T	c.(2584-2586)CGA>TGA	p.R862*	MLL_uc001ptb.2_Nonsense_Mutation_p.R862*|MLL_uc001psz.1_Nonsense_Mutation_p.R895*|MLL_uc001ptd.1_Intron	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	862					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		GTCCAAAGATCGAGATGCTGA	0.303000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								6	11					0	0	0.001168	0	0
HYOU1	10525	broad.mit.edu	37	11	118925230	118925230	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:118925230C>T	uc001puu.2	-	7	847	c.654G>A	c.(652-654)CGG>CGA	p.R218R	HYOU1_uc001put.2_Silent_p.R183R|HYOU1_uc010ryu.1_Silent_p.R238R|HYOU1_uc010ryv.1_Silent_p.R107R|HYOU1_uc001pux.3_Silent_p.R218R|HYOU1_uc010ryw.1_RNA|HYOU1_uc001puw.1_Silent_p.R218R	NM_006389	NP_006380	Q9Y4L1	HYOU1_HUMAN	hypoxia up-regulated 1 precursor	218						endoplasmic reticulum lumen	ATP binding|protein binding				0	all_hematologic(175;0.0839)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)|all_hematologic(192;0.207)		BRCA - Breast invasive adenocarcinoma(274;7.78e-05)		TAATATCTTTCCGGCGGAAGA	0.567000													56	81					0	0	0.014410	0	0
VWA5A	4013	broad.mit.edu	37	11	123993685	123993685	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:123993685C>T	uc001pzu.2	+	8	988	c.779C>T	c.(778-780)CCA>CTA	p.P260L	VWA5A_uc001pzr.2_Missense_Mutation_p.P260L|VWA5A_uc001pzs.2_Missense_Mutation_p.P260L|VWA5A_uc010sae.1_Missense_Mutation_p.P276L|VWA5A_uc001pzt.2_Missense_Mutation_p.P260L	NM_001130142	NP_001123614	O00534	VMA5A_HUMAN	BCSC-1 isoform 1	260										upper_aerodigestive_tract(1)|ovary(1)	2						ATGGGAGATCCATCTGCAATG	0.408000													21	37					0	0	0.003330	0	0
OR8B2	26595	broad.mit.edu	37	11	124253052	124253052	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:124253052A>C	uc010sai.1	-	1	188	c.188T>G	c.(187-189)CTC>CGC	p.L63R	OR8B2_uc001qab.3_RNA	NM_001005468	NP_001005468	Q96RD0	OR8B2_HUMAN	olfactory receptor, family 8, subfamily B,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GAGATTGAAGAGGAAATAGTA	0.393000													6	115					0	0	0.002450	0	0
OR8B3	390271	broad.mit.edu	37	11	124267060	124267060	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:124267060A>C	uc010saj.1	-	1	188	c.188T>G	c.(187-189)CTC>CGC	p.L63R	OR8B2_uc001qab.3_Intron	NM_001005467	NP_001005467	Q8NGG8	OR8B3_HUMAN	olfactory receptor, family 8, subfamily B,	63	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0277)		GAGATTGAAGAGGAAATAGTA	0.388000													30	60					0	0	0.004878	0	0
TMEM45B	120224	broad.mit.edu	37	11	129722390	129722390	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:129722390A>C	uc001qfe.1	+	2	74	c.13A>C	c.(13-15)AAG>CAG	p.K5Q	TMEM45B_uc001qff.1_Missense_Mutation_p.K5Q	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	5						integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		GGCAAATTTCAAGGGCCACGC	0.473000													22	34					0	0	0.003954	0	0
TMEM45B	120224	broad.mit.edu	37	11	129722409	129722409	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:129722409G>A	uc001qfe.1	+	2	93	c.32G>A	c.(31-33)GGG>GAG	p.G11E	TMEM45B_uc001qff.1_Missense_Mutation_p.G11E	NM_138788	NP_620143	Q96B21	TM45B_HUMAN	transmembrane protein 45B	11	Helical; (Potential).					integral to membrane					0	all_hematologic(175;0.0537)	Breast(109;0.00526)|Lung NSC(97;0.00901)|all_lung(97;0.018)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.012)|Lung(977;0.179)|LUSC - Lung squamous cell carcinoma(976;0.189)		GCGCTTCCAGGGAGTTTCTTC	0.463000													30	41					0	0	0.013726	0	0
ADAMTS8	11095	broad.mit.edu	37	11	130275743	130275743	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr11:130275743G>A	uc001qgg.3	-	9	2738	c.2380C>T	c.(2380-2382)CCT>TCT	p.P794S	ADAMTS8_uc001qgf.2_Missense_Mutation_p.P275S	NM_007037	NP_008968	Q9UP79	ATS8_HUMAN	ADAM metallopeptidase with thrombospondin type 1	794	Spacer.				negative regulation of cell proliferation|proteolysis	proteinaceous extracellular matrix	heparin binding|integrin binding|low affinity phosphate transmembrane transporter activity|metalloendopeptidase activity|zinc ion binding			central_nervous_system(1)	1	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.039)|Lung(977;0.213)		ACCTCGCCAGGGACTGTCAGG	0.567000													104	140					0	0	0.014410	0	0
PRB1	5542	broad.mit.edu	37	12	11506847	11506847	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:11506847C>T	uc001qzw.1	-	3	227	c.190G>A	c.(190-192)GGA>AGA	p.G64R	PRB1_uc001qzu.1_Missense_Mutation_p.G64R|PRB1_uc001qzv.1_Missense_Mutation_p.G64R	NM_005039	NP_005030	P04280	PRP1_HUMAN	proline-rich protein BstNI subfamily 1 isoform 1	125	15 X 20 AA approximate tandem repeats of P-P-G-K-P-Q-G-P-P-[PAQ]-Q-[GE]-[GD]- [NKS]-[KSQRN]-[PRQS]-[QS] [GPS]-[PQAR]- [PSR].|4.		Missing (in clone CP-4).|Missing (in clone CP-5).|Missing (in allele M).			extracellular region					0			OV - Ovarian serous cystadenocarcinoma(49;0.185)			TTGTTGCCTCCTTGTGGGGGT	0.607000													123	229					0	0	0.014410	0	0
GRIN2B	2904	broad.mit.edu	37	12	13716997	13716997	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:13716997C>T	uc001rbt.2	-	13	3354	c.3175G>A	c.(3175-3177)GAT>AAT	p.D1059N		NM_000834	NP_000825	Q13224	NMDE2_HUMAN	N-methyl-D-aspartate receptor subunit 2B	1059	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	glycine binding|N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			central_nervous_system(4)|ovary(3)|skin(3)|lung(2)	12					Felbamate(DB00949)|Haloperidol(DB00502)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	TCAGAGACATCGGAGCGGATC	0.572000													19	30					0	0	0.002780	0	0
ABCC9	10060	broad.mit.edu	37	12	22089526	22089526	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:22089526G>A	uc001rfi.1	-	1	103	c.83C>T	c.(82-84)GCC>GTC	p.A28V	ABCC9_uc001rfh.2_Missense_Mutation_p.A28V|ABCC9_uc001rfj.1_Missense_Mutation_p.A28V|ABCC9_uc001rfk.2_Missense_Mutation_p.A28V|ABCC9_uc001rfl.1_Missense_Mutation_p.A28V	NM_005691	NP_005682	O60706	ABCC9_HUMAN	ATP-binding cassette, sub-family C, member 9	28	Extracellular (Potential).				defense response to virus|potassium ion import	ATP-sensitive potassium channel complex	ATP binding|ATPase activity, coupled to transmembrane movement of substances|potassium channel regulator activity|sulfonylurea receptor activity			ovary(4)|skin(2)	6					Adenosine triphosphate(DB00171)|Glibenclamide(DB01016)	CAGGTTGAGGGCATCCACAAA	0.323000													25	27					0	0	0.009535	0	0
RAPGEF3	10411	broad.mit.edu	37	12	48134173	48134173	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:48134173T>G	uc009zkp.2	-	21	2551	c.2111A>C	c.(2110-2112)AAG>ACG	p.K704T	uc001rpv.2_RNA|RAPGEF3_uc001rpw.2_Missense_Mutation_p.K39T|RAPGEF3_uc001rpx.2_Missense_Mutation_p.K161T|RAPGEF3_uc010sln.1_Intron|RAPGEF3_uc001rpy.2_RNA|RAPGEF3_uc009zkq.2_Missense_Mutation_p.K704T|RAPGEF3_uc001rpz.3_Missense_Mutation_p.K746T	NM_001098532	NP_001092002	A8K2G5	A8K2G5_HUMAN	Rap guanine nucleotide exchange factor 3 isoform	704					regulation of protein phosphorylation|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cAMP-dependent protein kinase complex	cAMP-dependent protein kinase regulator activity|guanyl-nucleotide exchange factor activity			lung(2)|skin(1)|pancreas(1)	4	Lung SC(27;0.192)			GBM - Glioblastoma multiforme(48;0.0375)		CTTCTGCTCCTTGAGGCTGTG	0.587000													12	50					0	0	0.013537	0	0
KRT72	140807	broad.mit.edu	37	12	52992816	52992816	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:52992816C>T	uc001sar.2	-	2	593	c.507G>A	c.(505-507)AGG>AGA	p.R169R	KRT72_uc001saq.2_Silent_p.R169R|KRT72_uc010sns.1_Silent_p.R169R|KRT72_uc010snt.1_5'UTR	NM_001146225	NP_001139697	Q14CN4	K2C72_HUMAN	keratin 72 isoform 1	169	Linker 1.|Rod.					keratin filament	structural molecule activity			ovary(5)|pancreas(1)	6				BRCA - Breast invasive adenocarcinoma(357;0.195)		CCAGGTTCTTCCTGCAGTTGT	0.562000													41	63					0	0	0.011902	0	0
NCKAP1L	3071	broad.mit.edu	37	12	54912491	54912491	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:54912491C>T	uc001sgc.3	+	14	1474	c.1395C>T	c.(1393-1395)ATC>ATT	p.I465I	NCKAP1L_uc010sox.1_Silent_p.I7I|NCKAP1L_uc010soy.1_Silent_p.I415I	NM_005337	NP_005328	P55160	NCKPL_HUMAN	NCK-associated protein 1-like	465					actin polymerization-dependent cell motility|B cell homeostasis|B cell receptor signaling pathway|cortical actin cytoskeleton organization|erythrocyte development|maintenance of cell polarity|myeloid cell homeostasis|negative regulation of apoptosis|negative regulation of interleukin-17 production|negative regulation of interleukin-6 production|negative regulation of myosin-light-chain-phosphatase activity|neutrophil chemotaxis|positive regulation of actin filament polymerization|positive regulation of B cell differentiation|positive regulation of B cell proliferation|positive regulation of CD4-positive, alpha-beta T cell differentiation|positive regulation of CD8-positive, alpha-beta T cell differentiation|positive regulation of cell adhesion mediated by integrin|positive regulation of erythrocyte differentiation|positive regulation of gamma-delta T cell differentiation|positive regulation of neutrophil chemotaxis|positive regulation of phagocytosis, engulfment|positive regulation of T cell proliferation|protein complex assembly|response to drug|T cell homeostasis	cytosol|integral to plasma membrane|membrane fraction|SCAR complex	protein complex binding|protein kinase activator activity|Rac GTPase activator activity			ovary(3)|central_nervous_system(1)	4						TCGTCAGTATCCTCTCCTCTC	0.468000													28	54					0	0	0.004289	0	0
OR6C4	341418	broad.mit.edu	37	12	55945508	55945508	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:55945508C>T	uc010spp.1	+	1	498	c.498C>T	c.(496-498)TTC>TTT	p.F166F		NM_001005494	NP_001005494	Q8NGE1	OR6C4_HUMAN	olfactory receptor, family 6, subfamily C,	166	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						AGGTAGATTTCTGTGTCTCCA	0.478000													53	73					0	0	0.014410	0	0
NAB2	4665	broad.mit.edu	37	12	57486350	57486351	+	Missense_Mutation	DNP	CT	TA	TA			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:57486350_57486351CT>TA	uc001smz.2	+	3	1455_1456	c.1077_1078CT>TA	c.(1075-1080)TCCTTG>TCTATG	p.L360M		NM_005967	NP_005958	Q15742	NAB2_HUMAN	NGFI-A binding protein 2	360	Necessary for nuclear localization (By similarity).				cell proliferation|negative regulation of transcription from RNA polymerase III promoter|transcription, DNA-dependent	nucleus	transcription corepressor activity			upper_aerodigestive_tract(1)|ovary(1)	2						ACTTGTCCTCCTTGAAGGGCTC	0.550000													20	27					0	0	0.004672	0	0
GLI1	2735	broad.mit.edu	37	12	57859426	57859426	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:57859426C>T	uc001snx.2	+	6	649	c.571C>T	c.(571-573)CGG>TGG	p.R191W	GLI1_uc009zpq.2_Missense_Mutation_p.R63W	NM_005269	NP_005260	P08151	GLI1_HUMAN	GLI family zinc finger 1 isoform 1	191					epidermal cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|osteoblast differentiation|positive regulation of DNA replication|positive regulation of smoothened signaling pathway|positive regulation of transcription from RNA polymerase II promoter	cytosol|nucleus	transcription regulatory region DNA binding|zinc ion binding			skin(4)|ovary(4)|breast(3)|central_nervous_system(1)|urinary_tract(1)|kidney(1)|pancreas(1)	15			GBM - Glioblastoma multiforme(3;3.99e-32)			TGGCAAGTGCCGGGAGGAACC	0.552000													23	22					0	0	0.006320	0	0
PPM1H	57460	broad.mit.edu	37	12	63087742	63087742	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:63087742G>A	uc001srk.3	-	7	1260	c.1111C>T	c.(1111-1113)CCC>TCC	p.P371S		NM_020700	NP_065751	Q9ULR3	PPM1H_HUMAN	protein phosphatase 1H (PP2C domain containing)	371	PP2C-like.						phosphoprotein phosphatase activity			lung(3)|ovary(1)	4			GBM - Glioblastoma multiforme(1;0.000443)|BRCA - Breast invasive adenocarcinoma(9;0.209)	GBM - Glioblastoma multiforme(28;0.0126)		TATATAAGGGGGAACTTCAAG	0.507000													9	15					0	0	0.013537	0	0
PTPRB	5787	broad.mit.edu	37	12	70988325	70988325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:70988325G>A	uc001swb.3	-	4	814	c.784C>T	c.(784-786)CCT>TCT	p.P262S	PTPRB_uc010sto.1_Missense_Mutation_p.P262S|PTPRB_uc010stp.1_Missense_Mutation_p.P262S|PTPRB_uc001swc.3_Missense_Mutation_p.P480S|PTPRB_uc001swa.3_Missense_Mutation_p.P480S|PTPRB_uc001swd.3_Missense_Mutation_p.P479S|PTPRB_uc009zrr.1_Missense_Mutation_p.P359S|PTPRB_uc001swe.2_Missense_Mutation_p.P480S	NM_002837	NP_002828	P23467	PTPRB_HUMAN	protein tyrosine phosphatase, receptor type, B	262	Fibronectin type-III 3.|Extracellular (Potential).				angiogenesis	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(2)|skin(1)	3	Renal(347;0.236)		GBM - Glioblastoma multiforme(2;2.17e-05)|Lung(24;0.000636)|OV - Ovarian serous cystadenocarcinoma(12;0.00306)|STAD - Stomach adenocarcinoma(21;0.149)			AGGTAGCCAGGGGTCAGCCCG	0.507000													36	50					0	0	0.004289	0	0
CAPS2	84698	broad.mit.edu	37	12	75698579	75698579	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:75698579A>C	uc001sxk.3	-	9	991	c.794T>G	c.(793-795)ATG>AGG	p.M265R	CAPS2_uc001sxm.3_Missense_Mutation_p.M33R|CAPS2_uc009zsa.2_5'UTR|CAPS2_uc001sxi.3_Missense_Mutation_p.M33R|CAPS2_uc001sxj.3_Missense_Mutation_p.M208R|CAPS2_uc001sxl.3_Missense_Mutation_p.M246R	NM_032606	NP_115995	Q9BXY5	CAYP2_HUMAN	calcyphosine 2	265							calcium ion binding			ovary(2)	2						AAGAGGTGTCATCTTTGAATC	0.318000													21	34					0	0	0.014323	0	0
NAV3	89795	broad.mit.edu	37	12	78513269	78513269	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:78513269A>T	uc001syp.2	+	15	3466	c.3293A>T	c.(3292-3294)AAA>ATA	p.K1098I	NAV3_uc001syo.2_Missense_Mutation_p.K1098I|NAV3_uc010sub.1_Missense_Mutation_p.K598I|NAV3_uc009zsf.2_Missense_Mutation_p.K106I	NM_014903	NP_055718	Q8IVL0	NAV3_HUMAN	neuron navigator 3	1098	Ser-rich.					nuclear outer membrane	ATP binding|nucleoside-triphosphatase activity			large_intestine(6)|ovary(5)|lung(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	17						AAAATTCCAAAATCTGCTGCC	0.463000										HNSCC(70;0.22)			39	50					0	0	0.014410	0	0
LRRIQ1	84125	broad.mit.edu	37	12	85492135	85492135	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:85492135G>A	uc001tac.2	+	12	3001	c.2890G>A	c.(2890-2892)GGT>AGT	p.G964S	LRRIQ1_uc001tab.1_Missense_Mutation_p.G964S	NM_001079910	NP_001073379	Q96JM4	LRIQ1_HUMAN	leucine-rich repeats and IQ motif containing 1	964										ovary(4)|central_nervous_system(1)|skin(1)	6				GBM - Glioblastoma multiforme(134;0.212)		TCTTCTAGGTGGTTTAGAATC	0.308000													10	13					0	0	0.010729	0	0
PLXNC1	10154	broad.mit.edu	37	12	94692474	94692474	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:94692474C>T	uc001tdc.2	+	27	4390	c.4141C>T	c.(4141-4143)CCA>TCA	p.P1381S	PLXNC1_uc010sut.1_Missense_Mutation_p.P428S|PLXNC1_uc009zsv.2_Missense_Mutation_p.P120S	NM_005761	NP_005752	O60486	PLXC1_HUMAN	plexin C1 precursor	1381	Cytoplasmic (Potential).				axon guidance|cell adhesion	integral to membrane|intracellular|plasma membrane	receptor activity|receptor binding			ovary(2)|central_nervous_system(1)	3						CAGCAGAGCTCCATTTGCTAT	0.373000													17	22					0	0	0.004990	0	0
RAN	5901	broad.mit.edu	37	12	131357380	131357380	+	Splice_Site	SNP	G	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr12:131357380G>T	uc001uir.2	+	3	102	c.37_splice	c.e3-1	p.L13_splice	RAN_uc010tbk.1_Splice_Site|RAN_uc010tbl.1_Splice_Site|RAN_uc001uis.2_Splice_Site_p.L33_splice	NM_006325	NP_006316	P62826	RAN_HUMAN	ras-related nuclear protein						androgen receptor signaling pathway|cell division|DNA metabolic process|mitosis|mitotic spindle organization|positive regulation of transcription, DNA-dependent|protein export from nucleus|RNA export from nucleus|viral genome transport in host cell|viral infectious cycle	cytosol|melanosome|nuclear pore|nucleoplasm	androgen receptor binding|chromatin binding|GTP binding|GTPase activity|transcription coactivator activity				0	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	Lung NSC(355;7.46e-07)|all_epithelial(31;7.36e-06)		OV - Ovarian serous cystadenocarcinoma(86;9.18e-49)|Epithelial(86;1.42e-45)|all cancers(50;6.28e-40)		TTTTTCAACAGCTTGTATTGG	0.408000													51	87					4.88482e-21	5.05173e-21	0.014410	1	0
LOC284232	284232	broad.mit.edu	37	13	19428870	19428870	+	RNA	SNP	C	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:19428870C>A	uc010tcj.1	-	1		c.17240G>T				NR_027995				Homo sapiens ankyrin repeat domain 20 family, member A2 pseudogene (LOC284232), non-coding RNA.												0						tgagccactgcacccagccTC	0.159000													7	9					2.0095e-06	2.04554e-06	0.001984	1	0
GJB6	10804	broad.mit.edu	37	13	20797188	20797188	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:20797188G>A	uc001umz.3	-	3	985	c.432C>T	c.(430-432)ATC>ATT	p.I144I	GJB6_uc001unc.3_Silent_p.I144I|GJB6_uc001una.3_Silent_p.I144I|GJB6_uc001und.3_Silent_p.I144I|GJB6_uc001unb.3_Silent_p.I144I	NM_006783	NP_006774	O95452	CXB6_HUMAN	gap junction protein, beta 6	144	Helical; (Potential).				cell communication|sensory perception of sound	connexon complex|integral to membrane|intracellular membrane-bounded organelle				ovary(1)	1		all_cancers(29;2.04e-22)|all_epithelial(30;1.19e-19)|all_lung(29;2.27e-18)|Lung SC(185;0.0257)|Ovarian(182;0.0822)		all cancers(112;2.17e-05)|Epithelial(112;0.00075)|OV - Ovarian serous cystadenocarcinoma(117;0.00978)|Lung(94;0.0238)|GBM - Glioblastoma multiforme(144;0.0323)|LUSC - Lung squamous cell carcinoma(192;0.0744)		CTTCAAAGATGATTCGGAAAA	0.463000													26	35					0	0	0.008361	0	0
RNF17	56163	broad.mit.edu	37	13	25435432	25435432	+	Silent	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:25435432T>G	uc001upr.2	+	27	3842	c.3801T>G	c.(3799-3801)ACT>ACG	p.T1267T	RNF17_uc010tdd.1_Silent_p.T1126T|RNF17_uc010aab.2_RNA|RNF17_uc010tde.1_Silent_p.T1263T|RNF17_uc001ups.2_Silent_p.T1206T|RNF17_uc010aac.2_Silent_p.T465T|RNF17_uc010aad.2_Silent_p.T319T	NM_031277	NP_112567	Q9BXT8	RNF17_HUMAN	ring finger protein 17	1267	Tudor 3.				multicellular organismal development	cytoplasm|nucleus	hydrolase activity, acting on ester bonds|nucleic acid binding|zinc ion binding			ovary(1)|skin(1)	2		Lung SC(185;0.0225)|Breast(139;0.077)		all cancers(112;0.0114)|OV - Ovarian serous cystadenocarcinoma(117;0.0311)|Epithelial(112;0.0524)		ATGGATTCACTGAAAAGATTC	0.343000													60	221					0	0	0.014410	0	0
CENPJ	55835	broad.mit.edu	37	13	25459515	25459515	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:25459515G>A	uc001upt.3	-	13	3629	c.3376C>T	c.(3376-3378)CCC>TCC	p.P1126S	CENPJ_uc010tdf.1_RNA|CENPJ_uc010aae.2_RNA|CENPJ_uc010aaf.2_RNA	NM_018451	NP_060921	Q9HC77	CENPJ_HUMAN	centromere protein J	1126					cell division|centriole replication|G2/M transition of mitotic cell cycle|microtubule nucleation|microtubule polymerization	centriole|cytosol|gamma-tubulin small complex|microtubule	protein domain specific binding|tubulin binding			ovary(2)	2		Lung SC(185;0.0225)|Breast(139;0.0602)		all cancers(112;0.00793)|Epithelial(112;0.0411)|OV - Ovarian serous cystadenocarcinoma(117;0.139)		GGCTCCCTGGGAGAGGCAGCC	0.443000													37	81					0	0	0.006999	0	0
FLT3	2322	broad.mit.edu	37	13	28636041	28636041	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:28636041A>C	uc001urw.2	-	3	413	c.331T>G	c.(331-333)TCC>GCC	p.S111A	FLT3_uc010aao.2_RNA|FLT3_uc010tdn.1_Missense_Mutation_p.S111A	NM_004119	NP_004110	P36888	FLT3_HUMAN	fms-related tyrosine kinase 3 precursor	111	Extracellular (Potential).				positive regulation of cell proliferation	integral to plasma membrane	ATP binding|vascular endothelial growth factor receptor activity			haematopoietic_and_lymphoid_tissue(8536)|lung(7)|ovary(3)|stomach(1)|central_nervous_system(1)|skin(1)	8549	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0156)|Ovarian(182;0.0392)	Colorectal(13;0.000157)|READ - Rectum adenocarcinoma(15;0.105)	OV - Ovarian serous cystadenocarcinoma(117;0.00154)|all cancers(112;0.00459)|GBM - Glioblastoma multiforme(144;0.00562)|Epithelial(112;0.0959)|Lung(94;0.212)	Sorafenib(DB00398)|Sunitinib(DB01268)	CAATTCAGGGAGCTGTGCTTA	0.453000			Mis|O		AML|ALL								28	48					0	0	0.012213	0	0
ATP7B	540	broad.mit.edu	37	13	52523799	52523799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:52523799G>A	uc001vfw.2	-	12	3021	c.2864C>T	c.(2863-2865)CCT>CTT	p.P955L	ATP7B_uc010adv.2_Missense_Mutation_p.P525L|ATP7B_uc001vfx.2_Intron|ATP7B_uc001vfy.2_Missense_Mutation_p.P844L|ATP7B_uc010tgt.1_Missense_Mutation_p.P955L|ATP7B_uc010tgu.1_Missense_Mutation_p.P907L|ATP7B_uc010tgv.1_Missense_Mutation_p.P877L|ATP7B_uc001vfv.2_Missense_Mutation_p.P227L|ATP7B_uc010tgs.1_Missense_Mutation_p.P227L	NM_000053	NP_000044	P35670	ATP7B_HUMAN	ATPase, Cu++ transporting, beta polypeptide	955	Extracellular (Potential).				ATP biosynthetic process|cellular copper ion homeostasis|copper ion import|response to copper ion|sequestering of calcium ion	Golgi membrane|integral to plasma membrane|late endosome|mitochondrion	ATP binding|copper ion binding|copper-exporting ATPase activity|protein binding			ovary(1)|central_nervous_system(1)|skin(1)	3		Breast(56;0.000207)|Lung NSC(96;0.000845)|Prostate(109;0.0235)|Hepatocellular(98;0.065)|all_neural(104;0.19)		GBM - Glioblastoma multiforme(99;5.25e-08)		TCAACTTACAGGAAAGTATCT	0.353000									Wilson_disease				42	66					0	0	0.009718	0	0
THSD1	55901	broad.mit.edu	37	13	52951929	52951929	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:52951929G>A	uc001vgo.2	-	5	2721	c.2176C>T	c.(2176-2178)CCT>TCT	p.P726S	THSD1_uc001vgp.2_Missense_Mutation_p.P673S|THSD1_uc010tgz.1_Missense_Mutation_p.P347S|THSD1_uc010aea.2_Missense_Mutation_p.P187S	NM_018676	NP_061146	Q9NS62	THSD1_HUMAN	thrombospondin type I domain-containing 1	726	Cytoplasmic (Potential).					extracellular region|integral to membrane|intracellular membrane-bounded organelle				ovary(2)|upper_aerodigestive_tract(1)|skin(1)	4		Breast(56;0.000207)|Lung NSC(96;0.00145)|Hepatocellular(98;0.065)|Prostate(109;0.0771)|all_neural(104;0.173)		GBM - Glioblastoma multiforme(99;2.8e-08)		TAGGATTTAGGGAGAGGGTTT	0.537000													57	71					0	0	0.014410	0	0
SLITRK1	114798	broad.mit.edu	37	13	84454874	84454874	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:84454874C>T	uc001vlk.2	-	1	1655	c.769G>A	c.(769-771)GAA>AAA	p.E257K		NM_052910	NP_443142	Q96PX8	SLIK1_HUMAN	slit and trk like 1 protein precursor	257	Extracellular (Potential).|LRRCT 1.					integral to membrane				ovary(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)|skin(1)	5	Medulloblastoma(90;0.18)	Breast(118;0.212)		GBM - Glioblastoma multiforme(99;0.07)		AAGTCCTGTTCGGTGGTTTCA	0.547000													29	43					0	0	0.009535	0	0
TUBGCP3	10426	broad.mit.edu	37	13	113174230	113174230	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:113174230G>A	uc001vse.1	-	15	2038	c.1851C>T	c.(1849-1851)ATC>ATT	p.I617I	TUBGCP3_uc010tjq.1_Silent_p.I607I|TUBGCP3_uc001vsf.2_Silent_p.I617I	NM_006322	NP_006313	Q96CW5	GCP3_HUMAN	tubulin, gamma complex associated protein 3	617					G2/M transition of mitotic cell cycle|microtubule nucleation|single fertilization	centriole|cytosol|polar microtubule	gamma-tubulin binding|structural constituent of cytoskeleton			central_nervous_system(1)	1	all_lung(23;0.000374)|Lung NSC(43;0.0107)|Lung SC(71;0.0753)|all_neural(89;0.0804)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)					GCCTTCGCAGGATCTCAGGAC	0.592000													40	52					0	0	0.007835	0	0
GRK1	6011	broad.mit.edu	37	13	114322097	114322097	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr13:114322097G>A	uc010tkf.1	+	1	504	c.396G>A	c.(394-396)GCG>GCA	p.A132A		NM_002929	NP_002920	Q15835	RK_HUMAN	rhodopsin kinase precursor	132	RGS.|N-terminal.				regulation of G-protein coupled receptor protein signaling pathway|rhodopsin mediated phototransduction|rhodopsin mediated signaling pathway	membrane	ATP binding|G-protein coupled receptor kinase activity|rhodopsin kinase activity|signal transducer activity			ovary(2)	2	Lung NSC(43;0.0113)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_cancers(25;0.00696)|all_epithelial(44;0.00347)|all_lung(25;0.0221)|Breast(118;0.0411)|Lung NSC(25;0.0839)	all cancers(43;0.234)			GGATAGTGGCGAAGTTTAAGG	0.627000													3	13					0	0	0.004672	0	0
POTEG	404785	broad.mit.edu	37	14	19553567	19553567	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:19553567G>A	uc001vuz.1	+	1	203	c.151G>A	c.(151-153)GAT>AAT	p.D51N	POTEG_uc001vva.1_RNA|POTEG_uc010ahc.1_RNA	NM_001005356	NP_001005356	Q6S5H5	POTEG_HUMAN	POTE ankyrin domain family, member G	51										ovary(1)	1						AGACCACGACGATTCTGCTAT	0.602000													42	544					0	0	0.014410	0	0
OR4K1	79544	broad.mit.edu	37	14	20404752	20404752	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:20404752G>A	uc001vwj.1	+	1	927	c.927G>A	c.(925-927)TGG>TGA	p.W309*		NM_001004063	NP_001004063	Q8NGD4	OR4K1_HUMAN	olfactory receptor, family 4, subfamily K,	309	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|ovary(1)	3	all_cancers(95;0.00108)		Epithelial(56;9.96e-07)|all cancers(55;2.95e-06)	GBM - Glioblastoma multiforme(265;0.00124)		TGAACTCCTGGAAAAACTAGG	0.438000													8	85					0	0	0.003163	0	0
HEATR5A	25938	broad.mit.edu	37	14	31856331	31856331	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:31856331A>C	uc001wrf.3	-	2	382	c.305T>G	c.(304-306)GTT>GGT	p.V102G	HEATR5A_uc010ami.2_5'UTR|HEATR5A_uc001wrg.1_5'UTR|HEATR5A_uc010tpk.1_Missense_Mutation_p.V395G	NM_015473	NP_056288	Q86XA9	HTR5A_HUMAN	HEAT repeat containing 5A	389							binding			ovary(1)	1	Hepatocellular(127;0.0877)|Breast(36;0.137)		LUAD - Lung adenocarcinoma(48;0.00292)|Lung(238;0.0164)|BRCA - Breast invasive adenocarcinoma(188;0.0797)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.0059)		CATACCCATAACTTTCTTTAG	0.373000													65	56					0	0	0.014410	0	0
ARHGAP5	394	broad.mit.edu	37	14	32586368	32586368	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:32586368T>G	uc001wrl.2	+	3	3979	c.3740T>G	c.(3739-3741)TTC>TGC	p.F1247C	ARHGAP5_uc001wrm.2_Missense_Mutation_p.F1246C|ARHGAP5_uc001wrn.2_Missense_Mutation_p.F1247C|ARHGAP5_uc001wro.2_5'UTR|ARHGAP5_uc001wrp.2_Intron	NM_001173	NP_001025226	Q13017	RHG05_HUMAN	Rho GTPase activating protein 5 isoform b	1247					cell adhesion|Rho protein signal transduction	cytosol|membrane	GTP binding|GTPase activity|Rho GTPase activator activity|SH2 domain binding			ovary(4)|central_nervous_system(1)	5	Hepatocellular(127;0.0604)|Prostate(35;0.15)|Breast(36;0.186)		LUAD - Lung adenocarcinoma(48;0.00192)|Lung(238;0.00714)|BRCA - Breast invasive adenocarcinoma(188;0.0952)|STAD - Stomach adenocarcinoma(7;0.173)	GBM - Glioblastoma multiforme(265;0.00566)		ACTAAGAACTTCAATCCACCA	0.333000													33	39					0	0	0.004878	0	0
PRKCH	5583	broad.mit.edu	37	14	61915896	61915896	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:61915896G>A	uc001xfn.2	+	5	933	c.628G>A	c.(628-630)GTC>ATC	p.V210I	PRKCH_uc010tsa.1_Missense_Mutation_p.V49I	NM_006255	NP_006246	P24723	KPCL_HUMAN	protein kinase C, eta	210	Phorbol-ester/DAG-type 1.				intracellular signal transduction|platelet activation	cytosol|plasma membrane	ATP binding|enzyme binding|metal ion binding|protein kinase C activity			ovary(2)|haematopoietic_and_lymphoid_tissue(1)|lung(1)|large_intestine(1)|skin(1)	6				OV - Ovarian serous cystadenocarcinoma(108;0.045)|BRCA - Breast invasive adenocarcinoma(234;0.0906)|KIRC - Kidney renal clear cell carcinoma(182;0.182)		CACCTGTGTCGTCCATAAACG	0.423000													4	89					0	0	0.001168	0	0
ATP6V1D	51382	broad.mit.edu	37	14	67812508	67812508	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:67812508G>A	uc001xjf.2	-	6	609	c.433C>T	c.(433-435)CTG>TTG	p.L145L	ATP6V1D_uc001xje.2_RNA	NM_015994	NP_057078	Q9Y5K8	VATD_HUMAN	H(+)-transporting two-sector ATPase	145					ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytosol|proton-transporting two-sector ATPase complex, catalytic domain|vacuolar proton-transporting V-type ATPase complex	protein binding|proton-transporting ATPase activity, rotational mechanism			ovary(1)|lung(1)	2				all cancers(60;0.000739)|OV - Ovarian serous cystadenocarcinoma(108;0.00597)|BRCA - Breast invasive adenocarcinoma(234;0.00957)		AGTTCCACCAGTAGTTCCACT	0.453000													35	42					0	0	0.008740	0	0
ERH	2079	broad.mit.edu	37	14	69847262	69847262	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:69847262C>G	uc001xlc.2	-	4	379	c.308G>C	c.(307-309)GGG>GCG	p.G103A		NM_004450	NP_004441	P84090	ERH_HUMAN	enhancer of rudimentary homolog	103					cell cycle|pyrimidine nucleoside metabolic process	midbody	protein binding				0				all cancers(60;0.00365)|BRCA - Breast invasive adenocarcinoma(234;0.0137)|OV - Ovarian serous cystadenocarcinoma(108;0.0507)		CAATTATTTCCCAGCCTGTTG	0.493000													86	147					0	0	0.014410	0	0
PCNX	22990	broad.mit.edu	37	14	71542944	71542944	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:71542944G>A	uc001xmo.2	+	28	5591	c.5145G>A	c.(5143-5145)GAG>GAA	p.E1715E	PCNX_uc010are.1_Silent_p.E1604E|PCNX_uc010arf.1_Silent_p.E503E	NM_014982	NP_055797	Q96RV3	PCX1_HUMAN	pecanex-like 1	1715						integral to membrane				ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(12;0.206)	all cancers(60;0.00835)|BRCA - Breast invasive adenocarcinoma(234;0.00951)|OV - Ovarian serous cystadenocarcinoma(108;0.0417)		CTAAGCTAGAGGAGTGGCTAG	0.373000													33	114					0	0	0.008740	0	0
EML5	161436	broad.mit.edu	37	14	89151388	89151388	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:89151388T>C	uc001xxg.2	-	21	3139	c.2953A>G	c.(2953-2955)AAA>GAA	p.K985E	EML5_uc001xxh.1_Missense_Mutation_p.K124E	NM_183387	NP_899243	Q05BV3	EMAL5_HUMAN	echinoderm microtubule associated protein like	985						cytoplasm|microtubule				ovary(3)	3						GGGCCACTTTTATCCACTTCT	0.313000													47	80					0	0	0.014410	0	0
CCDC88C	440193	broad.mit.edu	37	14	91766303	91766303	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:91766303G>A	uc010aty.2	-	21	3846	c.3747C>T	c.(3745-3747)GGC>GGT	p.G1249G		NM_001080414	NP_001073883	Q9P219	DAPLE_HUMAN	DVL-binding protein DAPLE	1249	Potential.				microtubule cytoskeleton organization|protein destabilization|protein homooligomerization|regulation of protein phosphorylation|Wnt receptor signaling pathway	cytoplasm|insoluble fraction	microtubule binding|PDZ domain binding|protein self-association			ovary(3)	3		all_cancers(154;0.0468)				TCTGGTTCTCGCCCATGGCGA	0.652000													3	2					0	0	0.004672	0	0
KIAA1409	57578	broad.mit.edu	37	14	94007138	94007138	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:94007138C>T	uc001ybv.1	+	10	1037	c.954C>T	c.(952-954)CAC>CAT	p.H318H	KIAA1409_uc001ybs.1_Silent_p.H318H|KIAA1409_uc001ybu.1_Silent_p.H256H	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	495						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		ATGATAAACACGATCAGAGGC	0.433000													36	103					0	0	0.013114	0	0
KIAA1409	57578	broad.mit.edu	37	14	94044293	94044293	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:94044293C>T	uc001ybv.1	+	15	1869	c.1786C>T	c.(1786-1788)CGT>TGT	p.R596C	KIAA1409_uc001ybs.1_Missense_Mutation_p.R596C	NM_020818	NP_065869	Q9P2D8	UNC79_HUMAN	hypothetical protein LOC57578	773						integral to membrane				ovary(10)|skin(4)|large_intestine(3)	17		all_cancers(154;0.0354)|all_epithelial(191;0.216)		Epithelial(152;0.188)		TAGTCCGTTTCGTAGCCCTTT	0.433000													147	99					0	0	0.014410	0	0
PPP4R4	57718	broad.mit.edu	37	14	94708227	94708227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:94708227C>T	uc001ycs.1	+	10	1233	c.1079C>T	c.(1078-1080)CCA>CTA	p.P360L		NM_058237	NP_478144	Q6NUP7	PP4R4_HUMAN	HEAT-like repeat-containing protein isoform 1	360						cytoplasm|protein serine/threonine phosphatase complex	protein binding			skin(3)|upper_aerodigestive_tract(1)	4						AACCAGATTCCACCCCAAATC	0.333000													26	41					0	0	0.007291	0	0
MIR770	768222	broad.mit.edu	37	14	101318777	101318777	+	RNA	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:101318777G>A	hsa-mir-770|MI0005118	+			c.51G>A			MEG3_uc001yhy.2_Intron|MEG3_uc010txb.1_Intron|MEG3_uc010txc.1_Intron|MEG3_uc001yib.2_Intron|MEG3_uc010txd.1_Intron|MEG3_uc010txe.1_Intron|MEG3_uc001yic.2_Intron|MEG3_uc010txf.1_Intron|MEG3_uc010avz.1_Intron|MEG3_uc001yhw.2_Intron|MEG3_uc001yie.2_Intron|MEG3_uc001yhx.2_Intron|MEG3_uc010txg.1_Intron|MEG3_uc001yhz.2_Intron|MEG3_uc001yia.2_Intron|MEG3_uc010txh.1_Intron|MEG3_uc001yid.1_Intron|uc001yif.1_5'Flank																	0						CACATGAGCTGGGCCTCGTGG	0.587000													24	24					0	0	0.005443	0	0
C14orf73	91828	broad.mit.edu	37	14	103568549	103568549	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:103568549G>A	uc001ymk.2	+	2	565	c.489G>A	c.(487-489)AAG>AAA	p.K163K		NM_001077594	NP_001071062	Q17RC7	EX3L4_HUMAN	hypothetical protein LOC91828	163											0		Melanoma(154;0.155)	Epithelial(46;0.221)			TGGCCGAGAAGGCCTCGCGCA	0.652000													2	2					0	0	0.004672	0	0
ADAM6	8755	broad.mit.edu	37	14	106478467	106478467	+	RNA	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:106478467C>T	uc010tyt.1	-	1856		c.35865G>A								Parts of antibodies, mostly variable regions.												0						TCCCATATCCCCATGTCTGCA	0.592000													6	21					0	0	0.013537	0	0
ADAM6	8755	broad.mit.edu	37	14	106725437	106725437	+	RNA	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr14:106725437G>A	uc010tyt.1	-	588		c.18110C>T								Parts of antibodies, mostly variable regions.												0						GCACAGGAGAGTCTCAGGGAC	0.577000													67	157					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	15	20488793	20488793	+	RNA	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:20488793C>T	uc001ytf.1	+	2		c.276C>T								full-length cDNA clone CS0DI026YN18 of Placenta Cot 25-normalized of Homo sapiens (human).																		AGACCTCTCTCATGAGAACTT	0.413000													23	148					0	0	0.003954	0	0
C15orf23	90417	broad.mit.edu	37	15	40675107	40675107	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:40675107C>T	uc001zll.2	+	1	186	c.71C>T	c.(70-72)TCC>TTC	p.S24F	C15orf23_uc010ucp.1_Missense_Mutation_p.S24F|C15orf23_uc001zlo.2_Missense_Mutation_p.S24F|C15orf23_uc001zlm.2_RNA|C15orf23_uc001zln.2_RNA	NM_033286	NP_150628	Q9Y448	T4AF1_HUMAN	TRAF4 associated factor 1 isoform a	24						nucleus	protein binding			ovary(1)|skin(1)	2		all_cancers(109;2.34e-14)|all_epithelial(112;9.21e-12)|Lung NSC(122;2.95e-09)|all_lung(180;6.03e-08)|Melanoma(134;0.091)|Colorectal(260;0.198)|Ovarian(310;0.243)		GBM - Glioblastoma multiforme(113;3.39e-06)|BRCA - Breast invasive adenocarcinoma(123;0.0798)		GAGTGCGATTCCCACCCACTT	0.567000													25	34					0	0	0.005443	0	0
UBR1	197131	broad.mit.edu	37	15	43363004	43363004	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:43363004T>A	uc001zqq.2	-	5	714	c.648A>T	c.(646-648)GAA>GAT	p.E216D	UBR1_uc010udk.1_Missense_Mutation_p.E216D	NM_174916	NP_777576	Q8IWV7	UBR1_HUMAN	ubiquitin protein ligase E3 component n-recognin	216					cellular response to leucine|negative regulation of TOR signaling cascade	cytosol	leucine binding|zinc ion binding			lung(1)	1		all_cancers(109;4.32e-15)|all_epithelial(112;4.05e-13)|Lung NSC(122;1.75e-08)|all_lung(180;2e-07)|Melanoma(134;0.0179)|Colorectal(260;0.215)		GBM - Glioblastoma multiforme(94;4.08e-07)|COAD - Colon adenocarcinoma(120;0.185)|Colorectal(105;0.214)		TTATCTGGAGTTCAGGAGGCA	0.348000													58	103					0	0	0.014410	0	0
TPM1	7168	broad.mit.edu	37	15	63353939	63353939	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:63353939G>C	uc002alg.2	+	6	782	c.591G>C	c.(589-591)TTG>TTC	p.L197F	TPM1_uc002alh.2_Intron|TPM1_uc010bgn.2_Intron|TPM1_uc002ali.2_Missense_Mutation_p.L197F|TPM1_uc002alj.2_Missense_Mutation_p.L197F|TPM1_uc002alk.2_Intron|TPM1_uc002all.2_Intron|TPM1_uc002alm.2_Missense_Mutation_p.L239F|TPM1_uc010uie.1_Missense_Mutation_p.L197F|TPM1_uc002alp.2_Missense_Mutation_p.L197F|TPM1_uc010uif.1_Intron|TPM1_uc002alr.2_Intron|TPM1_uc002als.2_Missense_Mutation_p.L161F|TPM1_uc010uig.1_Missense_Mutation_p.L161F|TPM1_uc002alt.2_Intron|TPM1_uc010bgp.2_Intron	NM_001018005	NP_001018005	P09493	TPM1_HUMAN	tropomyosin 1 alpha chain isoform 1	197	By similarity.				cardiac muscle contraction|cellular component movement|cellular response to reactive oxygen species|muscle filament sliding|negative regulation of cell migration|positive regulation of ATPase activity|positive regulation of cell adhesion|positive regulation of heart rate by epinephrine|positive regulation of stress fiber assembly|regulation of muscle contraction|ruffle organization|sarcomere organization|ventricular cardiac muscle tissue morphogenesis|wound healing	bleb|cytosol|muscle thin filament tropomyosin|ruffle membrane|stress fiber	actin binding|structural constituent of cytoskeleton|structural constituent of muscle				0						AAGAAGAATTGAAAACTGTGA	0.483000													4	98					0	0	0.000602	0	0
HCN4	10021	broad.mit.edu	37	15	73615206	73615206	+	Silent	SNP	G	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:73615206G>C	uc002avp.2	-	8	4222	c.3228C>G	c.(3226-3228)CCC>CCG	p.P1076P		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	1076	Pro-rich.|Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		TGAGGCGGCCGGGGGTGAGCG	0.731000													2	13					0	0	0.004672	0	0
IL16	3603	broad.mit.edu	37	15	81584972	81584972	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:81584972C>T	uc002bgh.3	+	12	1872	c.1496C>T	c.(1495-1497)CCG>CTG	p.P499L	IL16_uc002bgc.2_RNA|IL16_uc010blq.1_Missense_Mutation_p.P499L|IL16_uc002bge.3_RNA|IL16_uc010unp.1_Missense_Mutation_p.P541L|IL16_uc002bgg.2_Missense_Mutation_p.P499L|IL16_uc002bgi.1_5'UTR|IL16_uc002bgj.2_5'UTR|IL16_uc002bgk.2_5'Flank	NM_172217	NP_757366	Q14005	IL16_HUMAN	interleukin 16 isoform 2	499					immune response|interspecies interaction between organisms|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|extracellular space|nucleus|plasma membrane	cytokine activity			ovary(2)|lung(1)|skin(1)	4						TCAGCACCCCCGCATCGCAGG	0.587000													18	44					0	0	0.006122	0	0
ALPK3	57538	broad.mit.edu	37	15	85400628	85400628	+	Missense_Mutation	SNP	C	T	T	rs147903664		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:85400628C>T	uc002ble.2	+	6	3432	c.3265C>T	c.(3265-3267)CCG>TCG	p.P1089S		NM_020778	NP_065829	Q96L96	ALPK3_HUMAN	alpha-kinase 3	1089					heart development	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(3)|ovary(3)|lung(2)|skin(2)|central_nervous_system(1)|breast(1)	12			BRCA - Breast invasive adenocarcinoma(143;0.0587)			GTGTAGCACCCCGACTTCTCA	0.637000													18	35					0	0	0.012319	0	0
ACAN	176	broad.mit.edu	37	15	89401708	89401708	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:89401708C>T	uc010upo.1	+	12	6266	c.5892C>T	c.(5890-5892)CTC>CTT	p.L1964L	ACAN_uc010upp.1_Silent_p.L1964L|ACAN_uc002bna.2_RNA	NM_013227	NP_037359	E7EX88	E7EX88_HUMAN	aggrecan isoform 2 precursor	1964					cell adhesion		hyaluronic acid binding|sugar binding			ovary(2)|central_nervous_system(1)	3	Lung NSC(78;0.0392)|all_lung(78;0.077)		BRCA - Breast invasive adenocarcinoma(143;0.146)			TTTTAGAACTCAGTGGTGCTC	0.547000													28	23					0	0	0.006320	0	0
SEMA4B	10509	broad.mit.edu	37	15	90764696	90764696	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:90764696C>T	uc002boy.2	+	7	976	c.693C>T	c.(691-693)TCC>TCT	p.S231S	SEMA4B_uc002boz.2_Silent_p.S231S|SEMA4B_uc010uqd.1_Silent_p.S69S|SEMA4B_uc002bpa.2_Silent_p.S69S|SEMA4B_uc010bnv.1_5'Flank	NM_020210	NP_064595			semaphorin 4B precursor											ovary(1)|breast(1)|kidney(1)	3	Melanoma(11;0.00551)|Lung NSC(78;0.0125)|all_lung(78;0.0272)		BRCA - Breast invasive adenocarcinoma(143;0.0107)|KIRC - Kidney renal clear cell carcinoma(17;0.0286)|Kidney(142;0.0514)|STAD - Stomach adenocarcinoma(125;0.217)			CCGAGAGCTCCCTCAACTGGC	0.617000											OREG0023469	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	3	5					0	0	0.004672	0	0
RGMA	56963	broad.mit.edu	37	15	93588422	93588422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:93588422C>T	uc002bss.1	-	4	1431	c.1159G>A	c.(1159-1161)GAC>AAC	p.D387N	RGMA_uc002bsq.1_Missense_Mutation_p.D371N|RGMA_uc010boi.1_Missense_Mutation_p.D278N|RGMA_uc002bsr.1_Missense_Mutation_p.D278N|RGMA_uc010urc.1_Missense_Mutation_p.D395N	NM_020211	NP_064596	Q96B86	RGMA_HUMAN	RGM domain family, member A precursor	387					axon guidance	anchored to membrane|endoplasmic reticulum|plasma membrane					0	Lung NSC(78;0.0542)|all_lung(78;0.0786)		BRCA - Breast invasive adenocarcinoma(143;0.0312)|OV - Ovarian serous cystadenocarcinoma(32;0.108)			AAGTTCACGTCGCCCGTGGTG	0.577000													5	8					0	0	0.003080	0	0
ERCC4	2072	broad.mit.edu	37	16	14029557	14029557	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr16:14029557C>T	uc002dce.2	+	8	1777	c.1768C>T	c.(1768-1770)CAG>TAG	p.Q590*	ERCC4_uc010uyz.1_Nonsense_Mutation_p.Q140*	NM_005236	NP_005227	Q92889	XPF_HUMAN	excision repair cross-complementing rodent	590					double-strand break repair via homologous recombination|meiotic mismatch repair|negative regulation of telomere maintenance|nucleotide-excision repair, DNA damage removal|nucleotide-excision repair, DNA incision, 3'-to lesion|nucleotide-excision repair, DNA incision, 5'-to lesion|resolution of meiotic recombination intermediates|telomere maintenance via telomere shortening|transcription-coupled nucleotide-excision repair	nuclear chromosome, telomeric region|nucleoplasm|nucleotide-excision repair factor 1 complex	damaged DNA binding|protein C-terminus binding|protein N-terminus binding|single-stranded DNA binding|single-stranded DNA specific endodeoxyribonuclease activity			lung(4)|ovary(3)|skin(2)|pancreas(1)	10						CTTTGTTCGGCAGCTTGAAAT	0.473000			Mis|N|F			skin basal cell|skin squamous cell|melanoma		Direct_reversal_of_damage|NER	Xeroderma_Pigmentosum				25	52					0	0	0.005443	0	0
VWA3A	146177	broad.mit.edu	37	16	22132418	22132418	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr16:22132418C>T	uc010vbq.1	+	13	1342	c.1246C>T	c.(1246-1248)CTG>TTG	p.L416L	VWA3A_uc010bxd.2_RNA|VWA3A_uc010bxc.2_Silent_p.L403L	NM_173615	NP_775886	A6NCI4	VWA3A_HUMAN	von Willebrand factor A domain containing 3A	416						extracellular region				skin(1)	1				GBM - Glioblastoma multiforme(48;0.0439)		GGTCAATGGTCTGAAAGGTAA	0.393000													32	58					0	0	0.007835	0	0
HSD3B7	80270	broad.mit.edu	37	16	30999184	30999184	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr16:30999184C>T	uc002eaf.2	+	7	896	c.790C>T	c.(790-792)CCC>TCC	p.P264S	HSD3B7_uc010cac.2_3'UTR|HSD3B7_uc002eag.2_3'UTR|HSD3B7_uc002eah.2_Missense_Mutation_p.P264S	NM_025193	NP_079469	Q9H2F3	3BHS7_HUMAN	hydroxy-delta-5-steroid dehydrogenase, 3 beta-	264					bile acid biosynthetic process	endoplasmic reticulum membrane|integral to membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|cholest-5-ene-3-beta,7-alpha-diol 3-beta-dehydrogenase activity				0						CGATGGATCACCCTACAGGAG	0.637000													73	144					0	0	0.014410	0	0
ITGAX	3687	broad.mit.edu	37	16	31371641	31371641	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr16:31371641T>C	uc002ebu.1	+	8	785	c.718T>C	c.(718-720)TTC>CTC	p.F240L	ITGAX_uc002ebt.2_Missense_Mutation_p.F240L|ITGAX_uc010vfk.1_5'Flank	NM_000887	NP_000878	P20702	ITAX_HUMAN	integrin alpha X precursor	240	VWFA.|Extracellular (Potential).				blood coagulation|cell adhesion|integrin-mediated signaling pathway|leukocyte migration|organ morphogenesis	integrin complex	protein binding|receptor activity			ovary(2)|central_nervous_system(1)|pancreas(1)	4						GCACCGATTGTTCCATGCCTC	0.378000													44	69					0	0	0.014410	0	0
ZFHX3	463	broad.mit.edu	37	16	72827191	72827191	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr16:72827191G>A	uc002fck.2	-	9	10063	c.9390C>T	c.(9388-9390)AAC>AAT	p.N3130N	ZFHX3_uc002fcl.2_Silent_p.N2216N	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	3130					muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				AGGAGGGGCTGTTGAGGCCCG	0.542000													5	143					0	0	0.001984	0	0
FAM92B	339145	broad.mit.edu	37	16	85135862	85135862	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr16:85135862G>A	uc010vok.1	-	6	765	c.609C>T	c.(607-609)GCC>GCT	p.A203A		NM_198491	NP_940893	Q6ZTR7	FA92B_HUMAN	hypothetical protein LOC339145	203										central_nervous_system(1)	1						GGGTCTGGAAGGCGCTAGAAT	0.463000													34	58					0	0	0.009718	0	0
IRF8	3394	broad.mit.edu	37	16	85936730	85936730	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr16:85936730C>T	uc002fjh.2	+	2	166	c.109C>T	c.(109-111)CGG>TGG	p.R37W	IRF8_uc002fji.2_Missense_Mutation_p.R37W	NM_002163	NP_002154	Q02556	IRF8_HUMAN	interferon regulatory factor 8	37	IRF tryptophan pentad repeat.				interferon-gamma-mediated signaling pathway|negative regulation of transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	nucleus	DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity			breast(2)|ovary(1)	3		Prostate(104;0.0771)				GAGCATGTTCCGGATCCCTTG	0.522000													39	41					0	0	0.005524	0	0
ABR	29	broad.mit.edu	37	17	975870	975870	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:975870G>A	uc002fsd.2	-	8	988	c.878C>T	c.(877-879)ACA>ATA	p.T293I	ABR_uc002fse.2_Missense_Mutation_p.T247I|ABR_uc010vqg.1_Missense_Mutation_p.T75I|ABR_uc002fsg.2_Missense_Mutation_p.T256I|ABR_uc002fsh.1_Missense_Mutation_p.T177I	NM_021962	NP_068781	Q12979	ABR_HUMAN	active breakpoint cluster region-related	293					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity|protein binding|Rho guanyl-nucleotide exchange factor activity			upper_aerodigestive_tract(1)	1				UCEC - Uterine corpus endometrioid carcinoma (25;0.0228)		CTTGGGCGTTGTCACTGCAGT	0.657000													11	15					0	0	0.010729	0	0
NLRP1	22861	broad.mit.edu	37	17	5462153	5462153	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:5462153G>A	uc002gci.2	-	4	2418	c.1863C>T	c.(1861-1863)TTC>TTT	p.F621F	NLRP1_uc002gcg.1_Silent_p.F621F|NLRP1_uc002gck.2_Silent_p.F621F|NLRP1_uc002gcj.2_Silent_p.F621F|NLRP1_uc002gcl.2_Silent_p.F621F|NLRP1_uc002gch.3_Silent_p.F621F|NLRP1_uc010clh.2_Silent_p.F621F	NM_033004	NP_127497	Q9C000	NALP1_HUMAN	NLR family, pyrin domain containing 1 isoform 1	621	NACHT.				defense response to bacterium|induction of apoptosis|neuron apoptosis|positive regulation of interleukin-1 beta secretion|response to muramyl dipeptide	cytoplasm|NALP1 inflammasome complex|nucleus	ATP binding|caspase activator activity|enzyme binding|protein domain specific binding			lung(4)|breast(2)|ovary(1)|central_nervous_system(1)|skin(1)	9		Colorectal(1115;3.48e-05)				AGAGGTGAATGAAGCTGTAGC	0.458000													22	25					0	0	0.014323	0	0
BCL6B	255877	broad.mit.edu	37	17	6927948	6927948	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:6927948G>A	uc002geg.2	+	4	687	c.630G>A	c.(628-630)GGG>GGA	p.G210G	BCL6B_uc010clt.1_Silent_p.G210G	NM_181844	NP_862827	Q8N143	BCL6B_HUMAN	B-cell CLL/lymphoma 6, member B (zinc finger	210						nucleus	zinc ion binding			skin(1)	1						CCCAAGCAGGGAGCCTGGTCG	0.527000													51	68					0	0	0.014410	0	0
MYH4	4622	broad.mit.edu	37	17	10348633	10348633	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:10348633G>A	uc002gmn.2	-	36	5327	c.5216C>T	c.(5215-5217)TCC>TTC	p.S1739F	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1739	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						CTGGATTTGGGAAATGTCTGT	0.443000													65	77					0	0	0.014410	0	0
MYH2	4620	broad.mit.edu	37	17	10428903	10428903	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:10428903C>T	uc010coi.2	-	32	4530	c.4402G>A	c.(4402-4404)GAA>AAA	p.E1468K	uc002gml.1_Intron|MYH2_uc002gmp.3_Missense_Mutation_p.E1468K|MYH2_uc010coj.2_Intron	NM_001100112	NP_001093582	Q9UKX2	MYH2_HUMAN	myosin heavy chain IIa	1468	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(5)|pancreas(4)|skin(3)|lung(1)|kidney(1)	14						GCATGCGTTTCCTCACATTTC	0.478000													15	28					0	0	0.003163	0	0
DNAH9	1770	broad.mit.edu	37	17	11790251	11790251	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:11790251A>C	uc002gne.2	+	57	11149	c.11081A>C	c.(11080-11082)AAG>ACG	p.K3694T	DNAH9_uc010coo.2_Missense_Mutation_p.K2988T|DNAH9_uc002gnf.2_Missense_Mutation_p.K6T|DNAH9_uc010vvh.1_Missense_Mutation_p.K47T	NM_001372	NP_001363	Q9NYC9	DYH9_HUMAN	dynein, axonemal, heavy chain 9 isoform 2	3694					cell projection organization|cellular component movement|microtubule-based movement|spermatogenesis	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			skin(10)|ovary(4)|breast(3)|central_nervous_system(2)|pancreas(1)	20		Breast(5;0.0122)|all_epithelial(5;0.131)		Colorectal(4;6.88e-05)|COAD - Colon adenocarcinoma(4;0.000813)|READ - Rectum adenocarcinoma(10;0.157)		GACCTCAGCAAGATCCATCCA	0.488000													43	54					0	0	0.014410	0	0
RICH2	9912	broad.mit.edu	37	17	12859277	12859277	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:12859277C>T	uc002gnr.3	+	14	1557	c.1230C>T	c.(1228-1230)CTC>CTT	p.L410L	RICH2_uc010vvk.1_Silent_p.L410L|RICH2_uc010vvl.1_Silent_p.L410L|RICH2_uc002gns.3_Silent_p.L210L|RICH2_uc010vvm.1_Silent_p.L410L|RICH2_uc010vvn.1_RNA|RICH2_uc002gnt.1_Silent_p.L133L	NM_014859	NP_055674	Q17R89	RHG44_HUMAN	Rho GTPase-activating protein RICH2	410	Rho-GAP.				regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol	GTPase activator activity				0						GACCCAACCTCCTATGGCCAC	0.473000													8	30					0	0	0.003080	0	0
PSMD11	5717	broad.mit.edu	37	17	30806301	30806301	+	Silent	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:30806301T>C	uc010cta.1	+	10	985	c.945T>C	c.(943-945)GAT>GAC	p.D315D	PSMD11_uc002hhm.2_Silent_p.D315D	NM_002815	NP_002806	O00231	PSD11_HUMAN	proteasome 26S non-ATPase subunit 11	315	PCI.				anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|apoptosis|DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|mRNA metabolic process|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|regulation of apoptosis|regulation of cellular amino acid metabolic process|S phase of mitotic cell cycle|viral reproduction	proteasome complex	protein binding			ovary(1)	1		Breast(31;0.159)|Ovarian(249;0.182)	BRCA - Breast invasive adenocarcinoma(9;0.109)			AGCTCCGGGATGACCCAATCA	0.473000													75	117					0	0	0.014410	0	0
PLXDC1	57125	broad.mit.edu	37	17	37224149	37224149	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:37224149C>T	uc002hrg.2	-	14	1659	c.1447G>A	c.(1447-1449)GAG>AAG	p.E483K	uc002hre.1_Intron|uc002hrf.1_Intron|PLXDC1_uc010cvr.1_Missense_Mutation_p.E179K|PLXDC1_uc002hrh.2_RNA|PLXDC1_uc002hri.2_RNA|PLXDC1_uc002hrj.1_RNA|PLXDC1_uc002hrk.1_RNA	NM_020405	NP_065138	Q8IUK5	PXDC1_HUMAN	plexin domain containing 1 precursor	483	Cytoplasmic (Potential).				angiogenesis	cytoplasm|extracellular region|integral to membrane|tight junction				ovary(1)|kidney(1)|skin(1)	3						GGCTCCACCTCCGCATAGGTG	0.577000													36	60					0	0	0.006999	0	0
GRB7	2886	broad.mit.edu	37	17	37898596	37898596	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:37898596G>A	uc002hsr.2	+	2	292	c.42G>A	c.(40-42)CCG>CCA	p.P14P	GRB7_uc002hss.2_Silent_p.P14P|GRB7_uc010cwc.2_Silent_p.P14P|GRB7_uc002hst.2_Silent_p.P14P	NM_005310	NP_005301	Q14451	GRB7_HUMAN	growth factor receptor-bound protein 7	14					blood coagulation|epidermal growth factor receptor signaling pathway|leukocyte migration|negative regulation of translation|positive regulation of cell migration|stress granule assembly	cytosol|focal adhesion|stress granule	phosphatidylinositol binding|protein kinase binding|SH3/SH2 adaptor activity			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(6;1.06e-93)|all_epithelial(6;2.33e-113)|Breast(7;9.37e-100)|Lung NSC(9;9.76e-10)|all_lung(9;5.34e-09)|Colorectal(19;0.000442)|Esophageal squamous(10;0.052)		UCEC - Uterine corpus endometrioid carcinoma (11;0.000126)|Epithelial(3;6.86e-60)|all cancers(3;1.65e-53)|BRCA - Breast invasive adenocarcinoma(8;2.03e-43)|STAD - Stomach adenocarcinoma(3;1.43e-12)|Colorectal(5;6.23e-08)|COAD - Colon adenocarcinoma(5;8.58e-06)|Lung(15;0.00193)|LUAD - Lung adenocarcinoma(14;0.0664)|LUSC - Lung squamous cell carcinoma(15;0.171)			GCAGCTCTCCGGAAGACCTTT	0.617000													99	143					0	0	0.014410	0	0
KRT25	147183	broad.mit.edu	37	17	38906650	38906650	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:38906650A>C	uc002hve.2	-	6	1218	c.1157T>G	c.(1156-1158)CTT>CGT	p.L386R		NM_181534	NP_853512	Q7Z3Z0	K1C25_HUMAN	keratin 25	386	Rod.|Coil 2.					cytoplasm|intermediate filament	structural molecule activity			ovary(2)	2		Breast(137;0.00526)				TCCTCCTATAAGGAGACAGTA	0.473000													99	112					0	0	0.014410	0	0
KRT15	3866	broad.mit.edu	37	17	39673185	39673185	+	Missense_Mutation	SNP	C	T	T	rs138271368		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:39673185C>T	uc002hwy.2	-	3	804	c.613G>A	c.(613-615)GTT>ATT	p.V205I	KRT15_uc002hwz.2_Missense_Mutation_p.V107I|KRT15_uc002hxa.2_Missense_Mutation_p.V40I|KRT15_uc002hxb.1_Missense_Mutation_p.V40I	NM_002275	NP_002266	P19012	K1C15_HUMAN	keratin 15	205	Rod.|Coil 1B.				epidermis development	intermediate filament	protein binding|structural constituent of cytoskeleton				0		Breast(137;0.000286)				TCAGCCTCAACGCCCTGGCGC	0.612000													36	46					0	0	0.008740	0	0
FMNL1	752	broad.mit.edu	37	17	43322700	43322700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:43322700G>A	uc002iin.2	+	22	3009	c.2809G>A	c.(2809-2811)GAT>AAT	p.D937N	FMNL1_uc002iiq.2_Missense_Mutation_p.D515N|FMNL1_uc010dag.2_RNA|LOC100133991_uc010dah.2_5'Flank	NM_005892	NP_005883	O95466	FMNL_HUMAN	formin-like 1	937	FH2.				actin cytoskeleton organization		actin binding|Rho GTPase binding			pancreas(1)	1						TGTGCGGCAGGATGACTGCAT	0.642000													53	12					0	0	0.014410	0	0
LRRC37A4	55073	broad.mit.edu	37	17	43587657	43587657	+	RNA	SNP	C	T	T	rs148404065	by1000genomes	TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:43587657C>T	uc002ije.2	-	3		c.1397G>A			uc010wjp.1_RNA					Homo sapiens cDNA FLJ34414 fis, clone HEART2003168, highly similar to Homo sapiens c114 SLIT-like testicular protein (LOC474170), mRNA.												0						GGTGACAACACATCTGTTTTA	0.279000													4	69					0	0	0.000602	0	0
CDK5RAP3	80279	broad.mit.edu	37	17	46053336	46053336	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:46053336G>A	uc002imr.2	+	8	839	c.755G>A	c.(754-756)CGA>CAA	p.R252Q	CDK5RAP3_uc010wlc.1_Missense_Mutation_p.R272Q|CDK5RAP3_uc002imq.1_Missense_Mutation_p.R27Q|CDK5RAP3_uc002imu.2_Missense_Mutation_p.R96Q|CDK5RAP3_uc002ims.2_Missense_Mutation_p.R165Q|CDK5RAP3_uc002imv.2_Missense_Mutation_p.R96Q|CDK5RAP3_uc002imw.2_Missense_Mutation_p.R96Q|CDK5RAP3_uc002imx.2_Missense_Mutation_p.R27Q	NM_176096	NP_788276	Q96JB5	CK5P3_HUMAN	CDK5 regulatory subunit associated protein 3	252					brain development|regulation of cyclin-dependent protein kinase activity|regulation of neuron differentiation		neuronal Cdc2-like kinase binding				0						GTGGTGGAACGACCCCACCTC	0.602000													6	44					0	0	0.008291	0	0
MED13	9969	broad.mit.edu	37	17	60023955	60023955	+	Silent	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:60023955A>T	uc002izo.2	-	30	6476	c.6399T>A	c.(6397-6399)GTT>GTA	p.V2133V		NM_005121	NP_005112	Q9UHV7	MED13_HUMAN	mediator complex subunit 13	2133					androgen receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|transcription initiation from RNA polymerase II promoter	mediator complex	ligand-dependent nuclear receptor transcription coactivator activity|receptor activity|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			large_intestine(1)|ovary(1)	2						ACTGTTCCAAAACAAACCTGA	0.393000													25	35					0	0	0.008361	0	0
C17orf77	146723	broad.mit.edu	37	17	72588529	72588529	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:72588529A>T	uc002jla.1	+	3	706	c.344A>T	c.(343-345)AAA>ATA	p.K115I	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	115	Cys-rich.					extracellular region					0						CATTCTTTGAAAAGACTAAGG	0.428000													44	66					0	0	0.014410	0	0
TSEN54	283989	broad.mit.edu	37	17	73519416	73519416	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:73519416G>A	uc002jof.1	+	9	1346	c.1313G>A	c.(1312-1314)CGG>CAG	p.R438Q	LLGL2_uc002jog.1_5'Flank|LLGL2_uc010dgf.1_5'Flank|LLGL2_uc002joh.2_5'Flank|LLGL2_uc002joi.2_5'Flank	NM_207346	NP_997229	Q7Z6J9	SEN54_HUMAN	tRNA splicing endonuclease 54 homolog	438					mRNA processing|tRNA splicing, via endonucleolytic cleavage and ligation	nucleolus				ovary(1)	1	all_cancers(13;3.15e-09)|all_epithelial(9;5.78e-10)|Breast(9;5.8e-10)|all_lung(278;0.246)		all cancers(21;4.57e-07)|Epithelial(20;2.92e-06)|Lung(188;0.0809)|LUSC - Lung squamous cell carcinoma(166;0.154)			GGAGGTGCCCGGTAAGTTTCC	0.537000													4	130					0	0	0.009096	0	0
EVPL	2125	broad.mit.edu	37	17	74004309	74004309	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:74004309G>A	uc002jqi.2	-	22	5205	c.4977C>T	c.(4975-4977)CTC>CTT	p.L1659L	EVPL_uc010wss.1_Silent_p.L1681L|EVPL_uc010wst.1_Silent_p.L1129L	NM_001988	NP_001979	Q92817	EVPL_HUMAN	envoplakin	1659	Central fibrous rod domain.				keratinization|peptide cross-linking	cornified envelope|cytoplasm|desmosome	protein binding, bridging|structural molecule activity			pancreas(2)|central_nervous_system(1)|skin(1)	4						GGAGGTCCCGGAGCGTCCGCT	0.667000													25	39					0	0	0.006320	0	0
PGS1	9489	broad.mit.edu	37	17	76399761	76399761	+	Silent	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:76399761T>G	uc002jvm.2	+	7	1005	c.993T>G	c.(991-993)CTT>CTG	p.L331L	PGS1_uc010wtt.1_RNA|PGS1_uc010dho.2_RNA|PGS1_uc002jvn.2_Silent_p.L44L|PGS1_uc002jvo.2_RNA|PGS1_uc002jvp.1_Silent_p.L44L	NM_024419	NP_077733	Q32NB8	PGPS1_HUMAN	phosphatidylglycerophosphate synthase 1	331					phospholipid biosynthetic process	endoplasmic reticulum|mitochondrion	ATP binding|CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity				0			BRCA - Breast invasive adenocarcinoma(99;0.00144)|OV - Ovarian serous cystadenocarcinoma(97;0.031)			GCAACTCTCTTTTGACCCAGG	0.542000													49	73					0	0	0.014410	0	0
DNAH17	8632	broad.mit.edu	37	17	76557814	76557814	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:76557814C>T	uc002jvv.1	-	8	1030	c.924G>A	c.(922-924)CTG>CTA	p.L308L						RecName: Full=Dynein heavy chain 17, axonemal; AltName: Full=Axonemal beta dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain 17; AltName: Full=Ciliary dynein heavy chain-like protein 1; AltName: Full=Axonemal dynein heavy chain-like protein 1; AltName: Full=Dynein light chain 2, axonemal;											ovary(6)|breast(2)|skin(1)	9			BRCA - Breast invasive adenocarcinoma(99;0.00294)|OV - Ovarian serous cystadenocarcinoma(97;0.0656)			CGACGTGCTTCAGGTGTTTCA	0.642000													6	17					0	0	0.003080	0	0
SLC26A11	284129	broad.mit.edu	37	17	78201660	78201660	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:78201660C>G	uc002jyb.1	+	7	906	c.637C>G	c.(637-639)CTG>GTG	p.L213V	SLC26A11_uc002jyc.1_Missense_Mutation_p.L213V|SLC26A11_uc002jyd.1_Missense_Mutation_p.L213V|SLC26A11_uc010dhv.1_Missense_Mutation_p.L213V	NM_173626	NP_775897	Q86WA9	S2611_HUMAN	solute carrier family 26, member 11	213	Helical; (Potential).					endoplasmic reticulum|Golgi apparatus|integral to membrane|lysosomal membrane|plasma membrane	anion:anion antiporter activity|secondary active sulfate transmembrane transporter activity				0	all_neural(118;0.0538)		OV - Ovarian serous cystadenocarcinoma(97;0.0344)|BRCA - Breast invasive adenocarcinoma(99;0.0908)			GCTGCTGCTGCTGGTGCTGAA	0.682000													4	173					0	0	0.000602	0	0
RPTOR	57521	broad.mit.edu	37	17	78820344	78820345	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr17:78820344_78820345CC>TT	uc002jyt.1	+	11	2089_2090	c.1284_1285CC>TT	c.(1282-1287)AACCCA>AATTCA	p.P429S	RPTOR_uc010wuf.1_Missense_Mutation_p.P244S|RPTOR_uc010wug.1_Missense_Mutation_p.P429S	NM_020761	NP_065812	Q8N122	RPTOR_HUMAN	raptor isoform 1	429					cell cycle arrest|cell growth|cellular response to amino acid stimulus|cellular response to nutrient levels|insulin receptor signaling pathway|positive regulation of protein serine/threonine kinase activity|positive regulation of TOR signaling cascade|TOR signaling cascade	cytosol|lysosome|TORC1 complex	protein complex binding			lung(4)|urinary_tract(1)|ovary(1)	6						AGAACCGAAACCCACCCGAACA	0.619000													61	72					0	0	0.004672	0	0
SPIRE1	56907	broad.mit.edu	37	18	12452347	12452347	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr18:12452347G>A	uc002kre.2	-	16	1966	c.1919C>T	c.(1918-1920)TCA>TTA	p.S640L	SPIRE1_uc002krc.2_RNA|SPIRE1_uc010wzw.1_Missense_Mutation_p.S506L|SPIRE1_uc010wzx.1_Missense_Mutation_p.S429L|SPIRE1_uc010wzy.1_Missense_Mutation_p.S626L	NM_001128626	NP_001122098	Q08AE8	SPIR1_HUMAN	spire homolog 1 isoform a	640						cytoskeleton|perinuclear region of cytoplasm	actin binding				0						AGGTCCCAATGAAAAGATAGG	0.483000													19	38					0	0	0.002780	0	0
MEP1B	4225	broad.mit.edu	37	18	29784173	29784173	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr18:29784173G>A	uc002kxj.3	+	7	444	c.397G>A	c.(397-399)GTT>ATT	p.V133I		NM_005925	NP_005916	Q16820	MEP1B_HUMAN	meprin A beta precursor	133	Extracellular (Potential).|Metalloprotease.				digestion|proteolysis	extracellular space|integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			ovary(2)	2						AAATAGGCGGGTTGGGAAGCA	0.512000													3	20					0	0	0.004672	0	0
ASXL3	80816	broad.mit.edu	37	18	31325120	31325120	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr18:31325120G>A	uc010dmg.1	+	12	5363	c.5308G>A	c.(5308-5310)GGA>AGA	p.G1770R	ASXL3_uc002kxq.2_Missense_Mutation_p.G1477R	NM_030632	NP_085135	Q9C0F0	ASXL3_HUMAN	additional sex combs like 3	1770					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	metal ion binding			ovary(2)|pancreas(1)	3						GCCCAGATTGGGAGCCAAGCT	0.517000													16	22					0	0	0.007413	0	0
SYT4	6860	broad.mit.edu	37	18	40850564	40850564	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr18:40850564C>T	uc002law.2	-	4	1389	c.1020G>A	c.(1018-1020)AAG>AAA	p.K340K	SYT4_uc010dng.2_RNA|SYT4_uc010xcm.1_Silent_p.K322K|SYT4_uc010dnh.2_Intron	NM_020783	NP_065834	Q9H2B2	SYT4_HUMAN	synaptotagmin IV	340	C2 2.|Cytoplasmic (Potential).					cell junction|integral to membrane|synaptic vesicle membrane	transporter activity			skin(5)	5						GAGTCTTCTTCTTGGAGATTC	0.428000													34	52					0	0	0.009718	0	0
DSEL	92126	broad.mit.edu	37	18	65178426	65178426	+	Silent	SNP	C	T	T	rs146176907		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr18:65178426C>T	uc002lke.1	-	2	4674	c.3450G>A	c.(3448-3450)AGG>AGA	p.R1150R		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	1140						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				AGGCAAAAATCCTTTCAGTAG	0.393000													24	28					0	0	0.002780	0	0
ABCA7	10347	broad.mit.edu	37	19	1047197	1047197	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:1047197C>T	uc002lqw.3	+	15	2118	c.1887C>T	c.(1885-1887)TTC>TTT	p.F629F	ABCA7_uc010dsb.1_Silent_p.F491F	NM_019112	NP_061985	Q8IZY2	ABCA7_HUMAN	ATP-binding cassette, sub-family A, member 7	629	Helical; (Potential).				phagocytosis|transmembrane transport	ATP-binding cassette (ABC) transporter complex|endosome membrane|Golgi membrane|integral to membrane|plasma membrane	ATP binding|ATPase activity|transporter activity			pancreas(7)|ovary(1)|central_nervous_system(1)	9		Acute lymphoblastic leukemia(61;2.53e-14)|all_hematologic(61;8.18e-10)|Lung NSC(49;1.04e-05)|all_lung(49;1.53e-05)|Breast(49;9.42e-05)|Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCGTGGTCTTCCTGTTCTTGG	0.687000													9	21					0	0	0.001855	0	0
SPPL2B	56928	broad.mit.edu	37	19	2338753	2338753	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:2338753C>T	uc002lvs.2	+	4	452	c.372C>T	c.(370-372)GTC>GTT	p.V124V	SPPL2B_uc010dsw.1_Silent_p.V96V|SPPL2B_uc010dsy.1_Silent_p.V96V|SPPL2B_uc010dsz.1_Silent_p.V124V|SPPL2B_uc002lvr.2_Silent_p.V124V|SPPL2B_uc010dta.1_5'UTR|SPPL2B_uc002lvu.2_5'Flank	NM_152988	NP_694533	Q8TCT7	PSL1_HUMAN	signal peptide peptidase-like 2B isoform 2	124	Cytoplasmic (Potential).|PA.					Golgi membrane|integral to membrane	aspartic-type endopeptidase activity				0		Hepatocellular(1079;0.137)		UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		GCCCCCAGGTCCCCCCGGGGG	0.642000													18	19					0	0	0.006122	0	0
ZNF556	80032	broad.mit.edu	37	19	2878302	2878302	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:2878302G>A	uc002lwp.1	+	4	1433	c.1346G>A	c.(1345-1347)GGA>GAA	p.G449E	ZNF556_uc002lwq.2_Missense_Mutation_p.G448E	NM_024967	NP_079243	Q9HAH1	ZN556_HUMAN	zinc finger protein 556	449					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(3)	3				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		AGTCACACAGGAAAGAAATCC	0.383000													38	63					0	0	0.010771	0	0
PLIN4	729359	broad.mit.edu	37	19	4513234	4513234	+	Silent	SNP	C	T	T	rs145635295	by1000genomes	TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:4513234C>T	uc002mar.1	-	3	696	c.696G>A	c.(694-696)GTG>GTA	p.V232V	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	232	27 X 33 AA approximate tandem repeat.|5.					lipid particle|plasma membrane					0						TGGCCACATTCACTGCCCCTG	0.567000													127	151					0	0	0.014410	0	0
HSD11B1L	374875	broad.mit.edu	37	19	5687522	5687522	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:5687522C>T	uc002mck.2	+	7	761	c.511C>T	c.(511-513)CCC>TCC	p.P171S	HSD11B1L_uc002mcu.2_Missense_Mutation_p.P37S|HSD11B1L_uc002mcl.2_Missense_Mutation_p.P90S|HSD11B1L_uc002mcm.2_Missense_Mutation_p.P37S|HSD11B1L_uc002mcq.2_Missense_Mutation_p.P37S|HSD11B1L_uc002mcr.2_Missense_Mutation_p.P90S|HSD11B1L_uc002mcs.2_Missense_Mutation_p.P225S|HSD11B1L_uc010dug.2_Missense_Mutation_p.P218S|HSD11B1L_uc002mct.2_Missense_Mutation_p.P37S|HSD11B1L_uc002mco.2_Missense_Mutation_p.P84S|HSD11B1L_uc002mcn.2_Missense_Mutation_p.P171S|HSD11B1L_uc002mcp.2_Missense_Mutation_p.P37S|RPL36_uc002mcv.2_5'Flank|RPL36_uc002mcw.2_5'Flank	NM_198533	NP_940935	Q7Z5J1	DHI1L_HUMAN	short-chain dehydrogenase/reductase 10 isoform	171						extracellular region	binding|oxidoreductase activity				0						AGGCCGCGTGCCCACGTCGTT	0.711000													4	10					0	0	0.001168	0	0
DENND1C	79958	broad.mit.edu	37	19	6479890	6479890	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:6479890G>A	uc002mfe.2	-	3	198	c.106C>T	c.(106-108)CCT>TCT	p.P36S	DENND1C_uc002mfd.2_5'UTR|DENND1C_uc010xje.1_Intron	NM_024898	NP_079174	Q8IV53	DEN1C_HUMAN	DENN/MADD domain containing 1C	36	UDENN.					clathrin-coated vesicle|cytosol	guanyl-nucleotide exchange factor activity			large_intestine(1)	1						AAGTCTGGAGGGAACTGCCGC	0.647000													7	10					0	0	0.001984	0	0
MUC16	94025	broad.mit.edu	37	19	9064411	9064411	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:9064411G>A	uc002mkp.2	-	3	23239	c.23035C>T	c.(23035-23037)CCC>TCC	p.P7679S		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	7681	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						TTCACAAAGGGAGGGCTAGGC	0.542000													21	39					0	0	0.012319	0	0
OR7D2	162998	broad.mit.edu	37	19	9296616	9296616	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:9296616C>T	uc002mkz.1	+	1	347	c.159C>T	c.(157-159)TCC>TCT	p.S53S		NM_175883	NP_787079	Q96RA2	OR7D2_HUMAN	olfactory receptor, family 7, subfamily D,	53	Cytoplasmic (Potential).				regulation of transcription, DNA-dependent|sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|upper_aerodigestive_tract(1)	3						GCTCTGACTCCCACCTCCACA	0.532000													63	97					0	0	0.014410	0	0
ZNF844	284391	broad.mit.edu	37	19	12187502	12187502	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:12187502A>G	uc002mtb.2	+	4	1710	c.1567A>G	c.(1567-1569)AAA>GAA	p.K523E	ZNF844_uc010dym.1_Missense_Mutation_p.K366E	NM_001136501	NP_001129973	Q08AG5	ZN844_HUMAN	zinc finger protein 844	523					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						CAAATGCATGAAAGGACTCAC	0.413000													3	88					0	0	0.009096	0	0
EMR3	84658	broad.mit.edu	37	19	14755005	14755005	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:14755005A>T	uc002mzi.3	-	9	1113	c.965T>A	c.(964-966)TTC>TAC	p.F322Y	EMR3_uc010dzp.2_Missense_Mutation_p.F270Y|EMR3_uc010xnv.1_Missense_Mutation_p.F196Y	NM_032571	NP_115960	Q9BY15	EMR3_HUMAN	egf-like module-containing mucin-like receptor	322	Extracellular (Potential).|GPS.				neuropeptide signaling pathway	extracellular space|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity	p.F322F(1)		ovary(5)|skin(1)	6						GTGTATCAGGAAGCAGCCATC	0.502000													46	51					0	0	0.014410	0	0
OR7A10	390892	broad.mit.edu	37	19	14952489	14952489	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:14952489G>A	uc002mzx.1	-	1	201	c.201C>T	c.(199-201)TCC>TCT	p.S67S		NM_001005190	NP_001005190	O76100	OR7AA_HUMAN	olfactory receptor, family 7, subfamily A,	67	Helical; Name=2; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	Ovarian(108;0.203)					TGTCTACGAAGGACAGGTTGG	0.522000													32	66					0	0	0.006230	0	0
OR10H4	126541	broad.mit.edu	37	19	16060701	16060701	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:16060701G>C	uc010xov.1	+	1	884	c.884G>C	c.(883-885)AGG>ACG	p.R295T		NM_001004465	NP_001004465	Q8NGA5	O10H4_HUMAN	olfactory receptor, family 10, subfamily H,	295	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|breast(1)	2						TTCAGCCTAAGGAACAAGGAG	0.443000													73	80					0	0	0.014410	0	0
ZNF208	7757	broad.mit.edu	37	19	22155282	22155282	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:22155282T>C	uc002nqp.2	-	5	2403	c.2254A>G	c.(2254-2256)AAG>GAG	p.K752E	ZNF208_uc002nqo.1_Intron	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TGAATTACCTTATGTTTAGTA	0.373000													4	67					0	0	0.009096	0	0
ZNF208	7757	broad.mit.edu	37	19	22157551	22157551	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:22157551G>A	uc002nqp.2	-	4	434	c.285C>T	c.(283-285)TTC>TTT	p.F95F	ZNF208_uc002nqo.1_Silent_p.F95F|ZNF208_uc010ecw.1_5'Flank	NM_007153	NP_009084			zinc finger protein 208											ovary(5)|skin(2)	7		all_lung(12;0.0961)|Lung NSC(12;0.103)				TCACTTTTTGGAAAGAATCTT	0.333000													12	19					0	0	0.013537	0	0
Unknown	0	broad.mit.edu	37	19	22784267	22784267	+	RNA	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:22784267G>A	uc002nqu.3	+	6		c.701G>A								Homo sapiens cDNA FLJ60031 complete cds, moderately similar to Golgin subfamily A member 2.																		GAAGAGGAGGGAGCCCAGGAG	0.468000													7	5					0	0	0.003080	0	0
Unknown	0	broad.mit.edu	37	19	24102841	24102841	+	RNA	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:24102841G>A	uc002nrp.1	-	3		c.627C>T			uc010eda.1_RNA					Homo sapiens cDNA FLJ43698 fis, clone TCERX2000998.																		AAGAAAAAGAGCCCTGGAATA	0.413000													39	36					0	0	0.014410	0	0
CHST8	64377	broad.mit.edu	37	19	34263753	34263753	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:34263753G>A	uc002nus.3	+	5	1565	c.1060G>A	c.(1060-1062)GAT>AAT	p.D354N	CHST8_uc002nut.3_Missense_Mutation_p.D354N|CHST8_uc002nuu.2_Missense_Mutation_p.D354N	NM_001127895	NP_001121367	Q9H2A9	CHST8_HUMAN	carbohydrate (N-acetylgalactosamine 4-0)	354	Lumenal (Potential).				carbohydrate biosynthetic process|central nervous system development|hormone biosynthetic process|proteoglycan biosynthetic process|sulfur compound metabolic process	Golgi membrane|integral to membrane	N-acetylgalactosamine 4-O-sulfotransferase activity			skin(2)|large_intestine(1)|ovary(1)	4	Esophageal squamous(110;0.162)					CATGGAGGACGATGCCAACTT	0.632000													23	34					0	0	0.004656	0	0
MLL4	9757	broad.mit.edu	37	19	36223529	36223529	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:36223529G>T	uc010eei.2	+	29	6079	c.6079G>T	c.(6079-6081)GAG>TAG	p.E2027*		NM_014727	NP_055542	Q9UMN6	MLL4_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 4	2027					chromatin-mediated maintenance of transcription		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			central_nervous_system(6)|breast(2)|ovary(1)|kidney(1)|skin(1)	11	all_lung(56;3.33e-07)|Lung NSC(56;5.02e-07)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0515)			CTCCGAGGAGGAGTCCAGCCC	0.697000													22	1					9.95505e-16	1.02718e-15	0.014323	1	0
ZNF146	7705	broad.mit.edu	37	19	36727835	36727835	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:36727835T>C	uc002odq.3	+	4	2016	c.493T>C	c.(493-495)TTT>CTT	p.F165L	ZNF146_uc010eet.2_Missense_Mutation_p.F165L|ZNF146_uc010eeu.2_Missense_Mutation_p.F165L	NM_007145	NP_009076	Q15072	OZF_HUMAN	zinc finger protein 146	165	C2H2-type 6.				regulation of transcription, DNA-dependent	cytoplasm|nucleolus	DNA binding|heparin binding|zinc ion binding				0	Esophageal squamous(110;0.162)					TGGAACAGCCTTTGGCCAGAA	0.418000													30	56					0	0	0.003271	0	0
SUPT5H	6829	broad.mit.edu	37	19	39967006	39967006	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:39967006C>T	uc002olo.3	+	30	3410	c.3231C>T	c.(3229-3231)AAC>AAT	p.N1077N	SUPT5H_uc002olp.3_Silent_p.N1077N|SUPT5H_uc002olq.3_Silent_p.N1073N|SUPT5H_uc002oln.3_Silent_p.N1077N|SUPT5H_uc002olr.3_Silent_p.N1077N	NM_001111020	NP_001104490	O00267	SPT5H_HUMAN	suppressor of Ty 5 homolog isoform a	1077					cell cycle|chromatin remodeling|mRNA capping|negative regulation of transcription elongation, DNA-dependent|negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription elongation from RNA polymerase II promoter|positive regulation of transcription from RNA polymerase II promoter|positive regulation of viral transcription|response to organic substance|retroviral genome replication|transcription elongation from RNA polymerase II promoter	nucleoplasm	enzyme binding|protein heterodimerization activity			ovary(3)|pancreas(1)	4	all_cancers(60;6.69e-07)|all_lung(34;2.66e-08)|Lung NSC(34;3e-08)|all_epithelial(25;1.57e-06)|Ovarian(47;0.159)		Epithelial(26;3.9e-26)|all cancers(26;1.35e-23)|LUSC - Lung squamous cell carcinoma(53;0.000657)			AGATCCTCAACCTCCGCTTCC	0.597000													56	12					0	0	0.014410	0	0
AXL	558	broad.mit.edu	37	19	41736918	41736918	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:41736918G>A	uc010ehj.2	+	5	823	c.633G>A	c.(631-633)AAG>AAA	p.K211K	CYP2F1_uc010xvw.1_Intron|AXL_uc010ehi.1_Silent_p.K211K|AXL_uc010ehk.2_Silent_p.K211K	NM_021913	NP_068713	P30530	UFO_HUMAN	AXL receptor tyrosine kinase isoform 1	211	Ig-like C2-type 2.|Extracellular (Potential).					integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(4)|stomach(3)|ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)	13						ATAACGCCAAGGGGGTCACCA	0.602000													82	113					0	0	0.014410	0	0
CEACAM21	90273	broad.mit.edu	37	19	42092220	42092220	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:42092220C>T	uc002ore.3	+	6	974	c.878C>T	c.(877-879)TCC>TTC	p.S293F	CEACAM21_uc002orc.1_RNA|CEACAM21_uc002ord.1_Intron|CEACAM21_uc002orf.2_RNA|CEACAM21_uc002org.3_Missense_Mutation_p.S292F	NM_001098506	NP_001091976	Q3KPI0	CEA21_HUMAN	carcinoembryonic antigen-related cell adhesion	293	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1						AGCTCCATCTCCTAGGTAAGA	0.592000													24	2					0	0	0.012213	0	0
CD79A	973	broad.mit.edu	37	19	42384973	42384974	+	Missense_Mutation	DNP	TC	AT	AT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:42384973_42384974TC>AT	uc002orv.2	+	5	792_793	c.607_608TC>AT	c.(607-609)TCC>ATC	p.S203I	CD79A_uc002oru.2_Missense_Mutation_p.S165I|ARHGEF1_uc002orw.1_5'Flank|ARHGEF1_uc002orx.2_5'Flank|ARHGEF1_uc002ory.2_5'Flank|ARHGEF1_uc002orz.2_5'Flank	NM_001783	NP_001774	P11912	CD79A_HUMAN	CD79A antigen isoform 1 precursor	203	Cytoplasmic (Potential).|ITAM.			S->A: Increased phosphorylation of Y-188; when associated with A-197 and V-209.	B cell differentiation|B cell proliferation|B cell receptor signaling pathway	B cell receptor complex|external side of plasma membrane|integral to membrane|membrane raft|multivesicular body	transmembrane receptor activity			ovary(2)|pancreas(1)	3						TGAGGACATCTCCCGGGGCCTC	0.634000			O|S		DLBCL								14	17					0	0	0.004672	0	0
MEGF8	1954	broad.mit.edu	37	19	42879809	42879809	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:42879809C>T	uc002otl.3	+	41	7854	c.7219C>T	c.(7219-7221)CGC>TGC	p.R2407C	MEGF8_uc002otm.3_Missense_Mutation_p.R2015C|MEGF8_uc002otn.3_Missense_Mutation_p.R68C	NM_001410	NP_001401	Q7Z7M0	MEGF8_HUMAN	multiple EGF-like-domains 8	2474	Extracellular (Potential).					integral to membrane	calcium ion binding|structural molecule activity			ovary(1)	1		Prostate(69;0.00682)				AGGCCCCGGCCGCACTGTCCT	0.647000													14	6					0	0	0.004007	0	0
ZC3H4	23211	broad.mit.edu	37	19	47584871	47584871	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:47584871G>A	uc002pga.3	-	11	1377	c.1339C>T	c.(1339-1341)CCG>TCG	p.P447S	ZC3H4_uc002pgb.1_Intron	NM_015168	NP_055983	Q9UPT8	ZC3H4_HUMAN	zinc finger CCCH-type containing 4	447	C3H1-type 3.						nucleic acid binding|zinc ion binding			skin(4)|ovary(2)	6		all_cancers(25;3.3e-08)|all_epithelial(76;2.28e-06)|all_lung(116;7.86e-06)|Lung NSC(112;2.31e-05)|all_neural(266;0.026)|Ovarian(192;0.0392)|Breast(70;0.0889)		OV - Ovarian serous cystadenocarcinoma(262;5.76e-05)|all cancers(93;7.69e-05)|Epithelial(262;0.00354)|GBM - Glioblastoma multiforme(486;0.0372)		AGCTTACACGGGAAATCACGT	0.473000													71	12					0	0	0.014410	0	0
HRC	3270	broad.mit.edu	37	19	49658119	49658119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:49658119C>T	uc002pmv.2	-	1	563	c.376G>A	c.(376-378)GAG>AAG	p.E126K	TRPM4_uc002pmw.2_5'Flank|TRPM4_uc010emu.2_5'Flank|TRPM4_uc010yak.1_5'Flank|TRPM4_uc002pmx.2_5'Flank|TRPM4_uc010emv.2_5'Flank|TRPM4_uc010yal.1_5'Flank	NM_002152	NP_002143	P23327	SRCH_HUMAN	histidine rich calcium binding protein	126	4 X tandem repeats, acidic.|6 X approximate tandem repeats.				muscle contraction	sarcoplasmic reticulum lumen	calcium ion binding			ovary(1)	1		all_lung(116;3.16e-06)|Lung NSC(112;6.25e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		all cancers(93;2.01e-05)|OV - Ovarian serous cystadenocarcinoma(262;0.00019)|GBM - Glioblastoma multiforme(486;0.00279)|Epithelial(262;0.00622)		CCACCATGCTCTGCAAAGACC	0.602000													32	48					0	0	0.003755	0	0
ALDH16A1	126133	broad.mit.edu	37	19	49967982	49967982	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:49967982C>T	uc002pnt.2	+	12	1647	c.1531C>T	c.(1531-1533)CCC>TCC	p.P511S	ALDH16A1_uc010yar.1_Missense_Mutation_p.P460S|ALDH16A1_uc010yas.1_Missense_Mutation_p.P346S|ALDH16A1_uc010yat.1_Missense_Mutation_p.P348S	NM_153329	NP_699160	Q8IZ83	A16A1_HUMAN	aldehyde dehydrogenase 16 family, member A1	511							oxidoreductase activity|protein binding			skin(1)	1		all_lung(116;5.39e-06)|Lung NSC(112;1.97e-05)|all_neural(266;0.0966)|Ovarian(192;0.15)		OV - Ovarian serous cystadenocarcinoma(262;0.00156)|GBM - Glioblastoma multiforme(486;0.0251)		CCTCGCTGTTCCCTCAACCCT	0.612000													215	35					0	0	0.014410	0	0
ZNF480	147657	broad.mit.edu	37	19	52825015	52825015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:52825015C>T	uc010ydl.1	+	5	582	c.512C>T	c.(511-513)TCT>TTT	p.S171F	ZNF480_uc002pyv.2_Missense_Mutation_p.S94F|ZNF480_uc010ydm.1_Missense_Mutation_p.S128F|ZNF480_uc010epn.2_Missense_Mutation_p.S2F|uc002pyw.1_Intron	NM_144684	NP_653285	Q8WV37	ZN480_HUMAN	zinc finger protein 480	171					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	nucleic acid binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00212)|OV - Ovarian serous cystadenocarcinoma(262;0.00369)		CAAGAAATGTCTTCCAGTGTC	0.353000													33	47					0	0	0.004289	0	0
ZNF83	55769	broad.mit.edu	37	19	53116885	53116885	+	Silent	SNP	A	G	G	rs7247257		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:53116885A>G	uc002pzu.3	-	2	2177	c.933T>C	c.(931-933)CAT>CAC	p.H311H	ZNF83_uc002pzv.3_Silent_p.H311H|ZNF83_uc010eps.2_Silent_p.H283H|ZNF83_uc010ept.2_Silent_p.H311H|ZNF83_uc010epu.2_Silent_p.H311H|ZNF83_uc010epv.2_Silent_p.H311H|ZNF83_uc010epw.2_Silent_p.H311H|ZNF83_uc010epx.2_Silent_p.H283H|ZNF83_uc010epy.2_Silent_p.H311H|ZNF83_uc010epz.2_Silent_p.H283H	NM_018300	NP_060770	P51522	ZNF83_HUMAN	zinc finger protein 83 isoform a	311	C2H2-type 8.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(262;0.00841)|GBM - Glioblastoma multiforme(134;0.0244)		TCTCTCCAGTATGAATTCTCC	0.418000													5	232					0	0	0.004482	0	0
ZNF845	91664	broad.mit.edu	37	19	53855364	53855365	+	Missense_Mutation	DNP	CA	TG	TG			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:53855364_53855365CA>TG	uc010ydv.1	+	4	1553_1554	c.1436_1437CA>TG	c.(1435-1437)ACA>ATG	p.T479M	ZNF845_uc010ydw.1_Missense_Mutation_p.T479M	NM_138374	NP_612383	Q96IR2	ZN845_HUMAN	zinc finger protein 845	479	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0						TTCAGTCAGACATCATCCCTTG	0.381000													5	147					0	0	0.004672	0	0
ZNF813	126017	broad.mit.edu	37	19	53994394	53994394	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:53994394A>C	uc002qbu.2	+	4	1036	c.908A>C	c.(907-909)GAA>GCA	p.E303A	ZNF813_uc010eqq.1_Intron	NM_001004301	NP_001004301	Q6ZN06	ZN813_HUMAN	zinc finger protein 813	303	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)	1				GBM - Glioblastoma multiforme(134;0.00619)		AAATGTGAAGAATGTGACAAA	0.388000													41	58					0	0	0.014410	0	0
LILRA2	11027	broad.mit.edu	37	19	55086319	55086319	+	Silent	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:55086319A>C	uc002qgg.3	+	4	563	c.474A>C	c.(472-474)GGA>GGC	p.G158G	LILRA2_uc010ern.2_Silent_p.G158G|LILRA2_uc002qgf.2_Silent_p.G158G|LILRA2_uc010yfe.1_Silent_p.G158G|LILRA2_uc010yff.1_Silent_p.G146G|LILRA2_uc010ero.2_Silent_p.G146G|LILRA2_uc010yfg.1_Silent_p.G158G	NM_001130917	NP_001124389	Q8N149	LIRA2_HUMAN	leukocyte immunoglobulin-like receptor,	158	Extracellular (Potential).|Ig-like C2-type 2.				defense response	integral to membrane	antigen binding|receptor activity			ovary(1)	1				GBM - Glioblastoma multiforme(193;0.0963)		GTAAGGAAGGAGAAGATGAAC	0.597000													66	78					0	0	0.014410	0	0
KIR2DL3	3804	broad.mit.edu	37	19	55255251	55255251	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:55255251G>A	uc002qgv.2	+	4	397	c.379G>A	c.(379-381)GAG>AAG	p.E127K	KIR2DL3_uc002qgx.2_Missense_Mutation_p.E127K|KIR2DL3_uc002qgy.2_Intron|KIR2DL3_uc010erw.1_Missense_Mutation_p.E127K|KIR2DL1_uc002qgz.1_Missense_Mutation_p.E37K|KIR2DL3_uc002qha.1_Intron	NM_015868	NP_056952	P43628	KI2L3_HUMAN	killer cell immunoglobulin-like receptor, two	127	Extracellular (Potential).				immune response|regulation of immune response	integral to plasma membrane	antigen binding|protein binding|receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		AGGTCTATATGAGAAACCTTC	0.557000													118	10					0	0	0.014410	0	0
ZNF835	90485	broad.mit.edu	37	19	57175066	57175066	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:57175066C>T	uc010ygo.1	-	2	1567	c.1567G>A	c.(1567-1569)GGA>AGA	p.G523R	ZNF835_uc010ygn.1_Missense_Mutation_p.G501R	NM_001005850	NP_001005850			zinc finger protein 835											pancreas(3)|skin(1)	4						CAAAGGCGTCCCGAACTGTCT	0.647000													184	32					0	0	0.014410	0	0
ZNF749	388567	broad.mit.edu	37	19	57955884	57955885	+	Missense_Mutation	DNP	CC	TG	TG			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:57955884_57955885CC>TG	uc002qoq.2	+	3	1622_1623	c.1368_1369CC>TG	c.(1366-1371)CACCAG>CATGAG	p.Q457E	ZNF547_uc002qpm.3_Intron	NM_001023561	NP_001018855	O43361	ZN749_HUMAN	zinc finger protein 749	457	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Colorectal(82;0.000256)|all_neural(62;0.0577)|Ovarian(87;0.221)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0264)|Lung(386;0.177)		TAGTTCAGCACCAGAAAATCCA	0.421000													4	92					0	0	0.004672	0	0
PXDN	7837	broad.mit.edu	37	2	1653276	1653276	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:1653276G>A	uc002qxa.2	-	17	2340	c.2276C>T	c.(2275-2277)TCG>TTG	p.S759L		NM_012293	NP_036425	Q92626	PXDN_HUMAN	peroxidasin precursor	759					extracellular matrix organization|hydrogen peroxide catabolic process|immune response	endoplasmic reticulum|extracellular space|proteinaceous extracellular matrix	extracellular matrix structural constituent|heme binding|interleukin-1 receptor antagonist activity|peroxidase activity			pancreas(6)|ovary(2)	8	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.0797)	all_cancers(51;0.0845)|Lung NSC(108;0.00641)|all_epithelial(98;0.00716)		all cancers(51;0.0492)|OV - Ovarian serous cystadenocarcinoma(76;0.0973)|Epithelial(75;0.17)|GBM - Glioblastoma multiforme(21;0.228)		GGCGGTCAGCGAGGCGCCCCA	0.627000													53	106					0	0	0.014410	0	0
RRM2	6241	broad.mit.edu	37	2	10267246	10267247	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:10267246_10267247GG>AA	uc002rah.2	+	7	888_889	c.697_698GG>AA	c.(697-699)GGC>AAC	p.G233N		NM_001034	NP_001025	P31350	RIR2_HUMAN	ribonucleotide reductase M2 polypeptide isoform	233					deoxyribonucleoside diphosphate metabolic process|deoxyribonucleotide biosynthetic process|DNA replication|nucleobase, nucleoside and nucleotide interconversion|regulation of transcription involved in G1/S phase of mitotic cell cycle	cytosol	ribonucleoside-diphosphate reductase activity|transition metal ion binding				0	all_hematologic(175;0.127)|Acute lymphoblastic leukemia(172;0.155)			Epithelial(75;0.188)|OV - Ovarian serous cystadenocarcinoma(76;0.221)		TGCAGTGGAAGGCATTTTCTTT	0.421000													67	104					0	0	0.004672	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765813	18765813	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:18765813G>A	uc002rcz.2	-	5	974	c.870C>T	c.(868-870)TAC>TAT	p.Y290Y	NT5C1B_uc002rcy.2_Silent_p.Y290Y|NT5C1B_uc010exr.2_Silent_p.Y232Y|NT5C1B_uc010yju.1_Silent_p.Y230Y|NT5C1B_uc002rda.2_Silent_p.Y230Y|NT5C1B_uc010yjv.1_Silent_p.Y307Y|NT5C1B_uc010yjw.1_Silent_p.Y273Y|NT5C1B_uc010exs.2_Silent_p.Y292Y|NT5C1B_uc002rdb.1_Silent_p.Y82Y	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	290					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGTTCTTCTCGTAGAACGACC	0.692000													9	17					0	0	0.001855	0	0
SPTBN1	6711	broad.mit.edu	37	2	54856482	54856482	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:54856482G>A	uc002rxu.2	+	14	2460	c.2211G>A	c.(2209-2211)AAG>AAA	p.K737K	SPTBN1_uc002rxv.1_Silent_p.K737K|SPTBN1_uc002rxx.2_Silent_p.K724K	NM_003128	NP_003119	Q01082	SPTB2_HUMAN	spectrin, beta, non-erythrocytic 1 isoform 1	737	Spectrin 5.				actin filament capping|axon guidance	cytosol|nucleolus|plasma membrane|sarcomere|spectrin	actin binding|calmodulin binding|protein binding|structural constituent of cytoskeleton			ovary(3)|breast(2)|central_nervous_system(2)|skin(1)	8			Lung(47;0.24)			CCATTCGGAAGAAGCGCCTGG	0.582000													27	38					0	0	0.007291	0	0
Unknown	0	broad.mit.edu	37	2	89345674	89345674	+	RNA	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:89345674A>G	uc010ytr.1	-	63		c.5664T>C			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		ATATCAGGCTAAAGCACTGCT	0.532000													71	11					0	0	0.014410	0	0
Unknown	0	broad.mit.edu	37	2	90139155	90139155	+	RNA	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:90139155C>T	uc010fhm.2	+	17		c.2067C>T								Parts of antibodies, mostly variable regions.																		TGCTCTGTTTCCCAGGTAAGG	0.498000													64	153					0	0	0.014410	0	0
SULT1C3	442038	broad.mit.edu	37	2	108881710	108881710	+	Nonsense_Mutation	SNP	G	A	A	rs146012391		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:108881710G>A	uc010ywo.1	+	7	818	c.818G>A	c.(817-819)TGG>TAG	p.W273*		NM_001008743	NP_001008743	Q6IMI6	ST1C3_HUMAN	sulfotransferase family, cytosolic, 1C, member	273						cytoplasm	alcohol sulfotransferase activity			skin(1)	1						CCTGGAGACTGGAAGAACTAT	0.478000													29	55					0	0	0.004289	0	0
ANAPC1	64682	broad.mit.edu	37	2	112545836	112545836	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:112545836A>G	uc002thi.2	-	39	5021	c.4774T>C	c.(4774-4776)TTC>CTC	p.F1592L		NM_022662	NP_073153	Q9H1A4	APC1_HUMAN	anaphase promoting complex subunit 1	1592					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell division|mitosis|mitotic cell cycle spindle assembly checkpoint|negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein K11-linked ubiquitination	anaphase-promoting complex|cytosol|nucleoplasm				skin(2)	2						TGAGCTGGGAAGTGCGGATAA	0.428000													19	48					0	0	0.003954	0	0
ERMN	57471	broad.mit.edu	37	2	158177966	158177966	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:158177966C>T	uc002tzh.2	-	3	934	c.672G>A	c.(670-672)GAG>GAA	p.E224E	ERMN_uc010zcj.1_Silent_p.E118E|ERMN_uc010zck.1_Silent_p.E204E|ERMN_uc002tzi.2_Silent_p.E237E	NM_020711	NP_065762	Q8TAM6	ERMIN_HUMAN	ermin, ERM-like protein isoform b	224						cytoplasm|cytoskeleton				ovary(1)|skin(1)	2						GTGGGGAGTCCTCACTTGCAT	0.373000													86	119					0	0	0.014410	0	0
ACVR1	90	broad.mit.edu	37	2	158630674	158630674	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:158630674G>A	uc002tzm.3	-	7	908	c.569C>T	c.(568-570)TCA>TTA	p.S190L	ACVR1_uc002tzn.3_Missense_Mutation_p.S190L|ACVR1_uc010fog.2_Missense_Mutation_p.S190L	NM_001111067	NP_001104537	Q04771	ACVR1_HUMAN	activin A receptor, type I precursor	190	Cytoplasmic (Potential).|GS.				BMP signaling pathway|G1/S transition of mitotic cell cycle|negative regulation of activin receptor signaling pathway|negative regulation of apoptosis|positive regulation of bone mineralization|positive regulation of osteoblast differentiation|positive regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	activin receptor complex	activin binding|ATP binding|follistatin binding|metal ion binding|protein homodimerization activity|SMAD binding|transforming growth factor beta binding			ovary(2)|skin(1)	3				BRCA - Breast invasive adenocarcinoma(221;0.104)	Adenosine triphosphate(DB00171)	GCCACTTCCTGATGTACACGA	0.418000													46	56					0	0	0.014410	0	0
SCN1A	6323	broad.mit.edu	37	2	166894575	166894575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:166894575G>A	uc010zcz.1	-	15	2642	c.2624C>T	c.(2623-2625)TCC>TTC	p.S875F	SCN1A_uc002udo.3_Missense_Mutation_p.S755F|SCN1A_uc010fpk.2_Missense_Mutation_p.S727F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	886	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGCCCCCACGGAATTGCCGAT	0.408000													29	34					0	0	0.012213	0	0
XIRP2	129446	broad.mit.edu	37	2	168107148	168107148	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:168107148C>G	uc002udx.2	+	8	9264	c.9246C>G	c.(9244-9246)CAC>CAG	p.H3082Q	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.H2907Q|XIRP2_uc010fpq.2_Missense_Mutation_p.H2860Q|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	2907					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						CAGTACAGCACCAAGTAGCAG	0.348000													11	19					0	0	0.001855	0	0
TTN	7273	broad.mit.edu	37	2	179434590	179434590	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:179434590G>A	uc010zfg.1	-	275	68789	c.68565C>T	c.(68563-68565)TTC>TTT	p.F22855F	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.F16550F|TTN_uc010zfi.1_Silent_p.F16483F|TTN_uc010zfj.1_Silent_p.F16358F	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23782							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TCCAAGAAAGGAATACTGAAG	0.413000													25	25					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179434752	179434752	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:179434752G>A	uc010zfg.1	-	275	68627	c.68403C>T	c.(68401-68403)CTC>CTT	p.L22801L	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.L16496L|TTN_uc010zfi.1_Silent_p.L16429L|TTN_uc010zfj.1_Silent_p.L16304L	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	23728							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GATTTTCTATGAGTCCAGTTA	0.438000													21	24					0	0	0.002780	0	0
TTN	7273	broad.mit.edu	37	2	179449181	179449181	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:179449181C>T	uc010zfg.1	-	260	57617	c.57393G>A	c.(57391-57393)AAG>AAA	p.K19131K	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Silent_p.K12826K|TTN_uc010zfi.1_Silent_p.K12759K|TTN_uc010zfj.1_Silent_p.K12634K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	20058							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			TGTTTCTTTCCTTGCGTTCAA	0.443000													17	32					0	0	0.007413	0	0
ZNF804A	91752	broad.mit.edu	37	2	185798354	185798354	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:185798354G>A	uc002uph.2	+	3	874	c.280G>A	c.(280-282)GAA>AAA	p.E94K		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	94						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						GAAACAAAGGGAATTTGCTCG	0.358000													14	34					0	0	0.004007	0	0
FAM171B	165215	broad.mit.edu	37	2	187626418	187626418	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:187626418G>A	uc002ups.2	+	8	1461	c.1349G>A	c.(1348-1350)AGA>AAA	p.R450K	FAM171B_uc002upr.1_Missense_Mutation_p.R417K|FAM171B_uc002upt.2_5'Flank	NM_177454	NP_803237	Q6P995	F171B_HUMAN	KIAA1946	450	Cytoplasmic (Potential).					integral to membrane	DNA binding			ovary(6)|breast(3)|central_nervous_system(1)	10						ACAGAAGAAAGAGTTTCCATG	0.358000													15	15					0	0	0.003163	0	0
HECW2	57520	broad.mit.edu	37	2	197183523	197183523	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:197183523C>T	uc002utm.1	-	9	2274	c.2091G>A	c.(2089-2091)TCG>TCA	p.S697S	HECW2_uc002utl.1_Silent_p.S341S	NM_020760	NP_065811	Q9P2P5	HECW2_HUMAN	HECT, C2 and WW domain containing E3 ubiquitin	697					protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm	ubiquitin-protein ligase activity			skin(5)|ovary(5)|lung(4)|pancreas(2)|central_nervous_system(1)|kidney(1)	18						CGGATTCCTGCGACCCTTCGG	0.612000													12	30					0	0	0.003163	0	0
KCTD18	130535	broad.mit.edu	37	2	201369527	201369528	+	Missense_Mutation	DNP	GG	AA	AA	rs144080666	byFrequency	TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:201369527_201369528GG>AA	uc002uvs.2	-	3	832_833	c.315_316CC>TT	c.(313-318)GACCAT>GATTAT	p.H106Y	KCTD18_uc002uvt.2_Missense_Mutation_p.H106Y|KCTD18_uc002uvu.1_Missense_Mutation_p.H106Y	NM_152387	NP_689600	Q6PI47	KCD18_HUMAN	potassium channel tetramerization domain	106						voltage-gated potassium channel complex	voltage-gated potassium channel activity			ovary(1)	1						TTGGCCAAATGGTCAGACAGGC	0.376000													31	47					0	0	0.004672	0	0
FN1	2335	broad.mit.edu	37	2	216253025	216253025	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:216253025C>T	uc002vfa.2	-	27	4519	c.4253_splice	c.e27-1	p.N1418_splice	FN1_uc002vfb.2_Splice_Site_p.N1327_splice|FN1_uc002vfc.2_Splice_Site_p.N1327_splice|FN1_uc002vfd.2_Splice_Site_p.N1418_splice|FN1_uc002vfe.2_Splice_Site_p.N1327_splice|FN1_uc002vff.2_Splice_Site_p.N1327_splice|FN1_uc002vfg.2_Splice_Site_p.N1327_splice|FN1_uc002vfh.2_Splice_Site_p.N1327_splice|FN1_uc002vfi.2_Splice_Site_p.N1418_splice|FN1_uc002vfj.2_Splice_Site_p.N1418_splice|FN1_uc002vez.2_Splice_Site|FN1_uc010zjp.1_Splice_Site_p.N45_splice	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein						acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	GGCAGGAGATCTGTAGGGGCA	0.438000													32	56					0	0	0.003755	0	0
SPEG	10290	broad.mit.edu	37	2	220342718	220342718	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:220342718G>A	uc010fwg.2	+	22	4918	c.4918G>A	c.(4918-4920)GCA>ACA	p.A1640T		NM_005876	NP_005867	Q15772	SPEG_HUMAN	SPEG complex locus	1640	Protein kinase 1.				muscle organ development|negative regulation of cell proliferation	nucleus	ATP binding|protein serine/threonine kinase activity			stomach(9)|ovary(4)|central_nervous_system(1)	14		Renal(207;0.0183)		Epithelial(149;4.5e-10)|all cancers(144;7.93e-08)|Lung(261;0.00639)|LUSC - Lung squamous cell carcinoma(224;0.00829)|READ - Rectum adenocarcinoma(5;0.163)		CAAGCCAAAGGCATCAGCGCG	0.637000													70	89					0	0	0.014410	0	0
NEU2	4759	broad.mit.edu	37	2	233899606	233899606	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:233899606G>A	uc010zmn.1	+	2	982	c.982G>A	c.(982-984)GCC>ACC	p.A328T		NM_005383	NP_005374	Q9Y3R4	NEUR2_HUMAN	neuraminidase 2	328							exo-alpha-sialidase activity				0		Breast(86;0.00279)|Renal(207;0.00339)|all_hematologic(139;0.0116)|all_lung(227;0.0271)|Acute lymphoblastic leukemia(138;0.0326)|Lung NSC(271;0.0839)		Epithelial(121;7.17e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000311)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(119;0.00942)|GBM - Glioblastoma multiforme(43;0.0488)		GGTACTGCTGGCCAAGGGCAG	0.632000													59	73					0	0	0.014410	0	0
SNED1	25992	broad.mit.edu	37	2	241991774	241991774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:241991774C>T	uc002wah.1	+	15	1972	c.1972C>T	c.(1972-1974)CCC>TCC	p.P658S		NM_001080437	NP_001073906	Q8TER0	SNED1_HUMAN	6720455I24Rik homolog precursor	658	EGF-like 10.				cell-matrix adhesion	extracellular region	calcium ion binding			breast(1)|central_nervous_system(1)	2		all_cancers(19;7.48e-31)|all_epithelial(40;1.35e-12)|Breast(86;0.000148)|Renal(207;0.00528)|Ovarian(221;0.104)|Esophageal squamous(248;0.131)|all_lung(227;0.17)|all_hematologic(139;0.182)|Melanoma(123;0.238)		Epithelial(32;6.46e-32)|all cancers(36;6.23e-29)|OV - Ovarian serous cystadenocarcinoma(60;2.1e-14)|Kidney(56;6.35e-09)|KIRC - Kidney renal clear cell carcinoma(57;5.98e-08)|BRCA - Breast invasive adenocarcinoma(100;3.66e-06)|Lung(119;0.00072)|LUSC - Lung squamous cell carcinoma(224;0.00553)|Colorectal(34;0.0162)|COAD - Colon adenocarcinoma(134;0.109)		TCTGGCAGCCCCCTCCCCCTG	0.657000													14	22					0	0	0.002450	0	0
TGM6	343641	broad.mit.edu	37	20	2411657	2411657	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:2411657G>A	uc002wfy.1	+	12	2012	c.1951G>A	c.(1951-1953)GAA>AAA	p.E651K	TGM6_uc010gal.1_Intron	NM_198994	NP_945345	O95932	TGM3L_HUMAN	transglutaminase 6	651					cell death|peptide cross-linking		acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			ovary(3)|skin(1)	4					L-Glutamine(DB00130)	CCTTCTCCAGGAACAGCTCAG	0.592000													33	44					0	0	0.005524	0	0
PAK7	57144	broad.mit.edu	37	20	9523344	9523344	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:9523344G>A	uc002wnl.2	-	10	2438	c.1893C>T	c.(1891-1893)ATC>ATT	p.I631I	PAK7_uc002wnk.2_Silent_p.I631I|PAK7_uc002wnj.2_Silent_p.I631I|PAK7_uc010gby.1_Intron	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	631	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			CTATCACCATGATCCCGAGGG	0.522000													36	64					0	0	0.006230	0	0
PAK7	57144	broad.mit.edu	37	20	9543557	9543557	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:9543557C>T	uc002wnl.2	-	7	2142	c.1597G>A	c.(1597-1599)GAC>AAC	p.D533N	PAK7_uc002wnk.2_Missense_Mutation_p.D533N|PAK7_uc002wnj.2_Missense_Mutation_p.D533N|PAK7_uc010gby.1_Missense_Mutation_p.D533N	NM_020341	NP_065074	Q9P286	PAK7_HUMAN	p21-activated kinase 7	533	Protein kinase.						ATP binding|protein binding|protein serine/threonine kinase activity			lung(11)|skin(5)|central_nervous_system(3)|ovary(2)|large_intestine(1)|stomach(1)	23			COAD - Colon adenocarcinoma(9;0.194)			GTCACAATGTCTGTCAAGGCA	0.473000													41	72					0	0	0.014410	0	0
CST1	1469	broad.mit.edu	37	20	23731354	23731354	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:23731354G>A	uc002wtp.2	-	1	221	c.150C>T	c.(148-150)TTC>TTT	p.F50F		NM_001898	NP_001889	P01037	CYTN_HUMAN	cystatin SN precursor	50						extracellular region	cysteine-type endopeptidase inhibitor activity			ovary(1)	1	Lung NSC(19;0.0676)|all_lung(19;0.148)					CGCTGATGGCGAAGTGAAGGG	0.572000													40	55					0	0	0.014410	0	0
NCOA6	23054	broad.mit.edu	37	20	33329386	33329386	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:33329386G>A	uc002xav.2	-	12	7245	c.4674C>T	c.(4672-4674)TCC>TCT	p.S1558S	NCOA6_uc002xaw.2_Silent_p.S1558S	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1558					brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						GATGCACAAGGGATGAACACA	0.448000													64	136					0	0	0.014410	0	0
PLCG1	5335	broad.mit.edu	37	20	39794935	39794935	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:39794935A>G	uc002xjp.1	+	17	2022	c.1901A>G	c.(1900-1902)GAC>GGC	p.D634G	PLCG1_uc002xjo.1_Missense_Mutation_p.D634G|PLCG1_uc010zwe.1_Missense_Mutation_p.D260G|PLCG1_uc010ggf.2_5'UTR	NM_182811	NP_877963	P19174	PLCG1_HUMAN	phospholipase C, gamma 1 isoform b	634	SH2 1.				activation of phospholipase C activity|axon guidance|blood coagulation|cellular response to epidermal growth factor stimulus|epidermal growth factor receptor signaling pathway|fibroblast growth factor receptor signaling pathway|interspecies interaction between organisms|intracellular signal transduction|leukocyte migration|nerve growth factor receptor signaling pathway|phospholipid catabolic process|positive regulation of angiogenesis|positive regulation of blood vessel endothelial cell migration|positive regulation of epithelial cell migration|T cell receptor signaling pathway	cytosol|lamellipodium|plasma membrane|ruffle	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|receptor signaling protein activity			lung(3)|breast(3)|skin(2)	8		Myeloproliferative disorder(115;0.00878)				TCCCTCTATGACCTCATCACG	0.562000													39	51					0	0	0.010771	0	0
CHD6	84181	broad.mit.edu	37	20	40033543	40033543	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:40033543A>C	uc002xka.1	-	37	8016	c.7838T>G	c.(7837-7839)CTC>CGC	p.L2613R	CHD6_uc002xjz.1_Missense_Mutation_p.L150R	NM_032221	NP_115597	Q8TD26	CHD6_HUMAN	chromodomain helicase DNA binding protein 6	2613					chromatin remodeling|nervous system development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	ATP binding|ATP-dependent helicase activity|chromatin binding|DNA binding			ovary(6)|skin(5)|lung(2)|central_nervous_system(1)	14		Myeloproliferative disorder(115;0.00425)				TCCTGGGATGAGAAATGGGTT	0.507000													46	40					0	0	0.010771	0	0
SEMG2	6407	broad.mit.edu	37	20	43851148	43851148	+	Missense_Mutation	SNP	G	A	A	rs145586123		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:43851148G>A	uc010ggz.2	+	2	932	c.875G>A	c.(874-876)CGT>CAT	p.R292H	SEMG2_uc002xnk.2_Missense_Mutation_p.R292H|SEMG2_uc002xnl.2_Missense_Mutation_p.R292H	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	292	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				CCGTCTTCACGTACAGAAGAA	0.398000													33	40					0	0	0.013726	0	0
MC3R	4159	broad.mit.edu	37	20	54824095	54824095	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:54824095A>C	uc002xxb.2	+	1	308	c.196A>C	c.(196-198)AAC>CAC	p.N66H		NM_019888	NP_063941	P41968	MC3R_HUMAN	melanocortin 3 receptor	103	Cytoplasmic (Potential).				activation of phospholipase C activity by G-protein coupled receptor protein signaling pathway coupled to IP3 second messenger|positive regulation of cAMP biosynthetic process	integral to plasma membrane	melanocyte-stimulating hormone receptor activity|neuropeptide binding|protein binding			ovary(2)|breast(2)	4			Colorectal(105;0.202)			CGTGGTCAGGAACGGCAACCT	0.567000													30	56					0	0	0.010818	0	0
SLC17A9	63910	broad.mit.edu	37	20	61588891	61588891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr20:61588891C>T	uc002yea.3	+	3	540	c.356C>T	c.(355-357)GCC>GTC	p.A119V	SLC17A9_uc002ydz.3_Missense_Mutation_p.A113V|SLC17A9_uc011aap.1_Missense_Mutation_p.A139V	NM_022082	NP_071365	Q9BYT1	S17A9_HUMAN	vesicular nucleotide transporter SLC17A9	119	Helical; (Potential).				exocytosis|transmembrane transport	integral to membrane	transporter activity			ovary(1)|skin(1)	2						GCCCACCTGGCCTTCATGACC	0.642000													21	24					0	0	0.003330	0	0
APP	351	broad.mit.edu	37	21	27394279	27394279	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr21:27394279C>T	uc002ylz.2	-	6	942	c.742G>A	c.(742-744)GAT>AAT	p.D248N	APP_uc010glk.2_Missense_Mutation_p.D243N|APP_uc002yma.2_Missense_Mutation_p.D248N|APP_uc011ach.1_Missense_Mutation_p.D192N|APP_uc002ymb.2_Missense_Mutation_p.D248N|APP_uc010glj.2_Missense_Mutation_p.D192N|APP_uc011aci.1_Missense_Mutation_p.D213N|APP_uc011acj.1_Missense_Mutation_p.D248N	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	248	Extracellular (Potential).|Asp/Glu-rich (acidic).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				ccatcctcatcgtcctcgtca	0.109000													4	12					0	0	0.009096	0	0
BACH1	571	broad.mit.edu	37	21	30693778	30693778	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr21:30693778C>T	uc002ynj.2	+	2	292	c.177C>T	c.(175-177)TTC>TTT	p.F59F	BACH1_uc002ynk.2_Silent_p.F59F|BACH1_uc002ynl.2_RNA	NM_001186	NP_001177	O14867	BACH1_HUMAN	BTB and CNC homology 1 transcription factor	59	BTB.					nucleus	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)|liver(1)	2						GCAGTTACTTCCACTCAAGAA	0.502000													39	68					0	0	0.013114	0	0
ITSN1	6453	broad.mit.edu	37	21	35258649	35258649	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr21:35258649G>A	uc002yta.1	+	39	5170	c.4902G>A	c.(4900-4902)ACG>ACA	p.T1634T	DONSON_uc002ysn.1_Intron|ITSN1_uc002ytb.1_Silent_p.T1629T|ITSN1_uc002ytj.2_Silent_p.T1573T|ITSN1_uc010gmm.1_RNA|ITSN1_uc010gmn.1_RNA	NM_003024	NP_003015	Q15811	ITSN1_HUMAN	intersectin 1 isoform ITSN-l	1634	C2.				apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|synaptic vesicle endocytosis	cell junction|coated pit|cytosol|lamellipodium|synapse|synaptosome	calcium ion binding|proline-rich region binding|protein complex scaffold|Rho guanyl-nucleotide exchange factor activity			ovary(3)|skin(1)	4						TCACCAAGACGATCCAGGACA	0.552000													25	45					0	0	0.010818	0	0
SIK1	150094	broad.mit.edu	37	21	44836900	44836901	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr21:44836900_44836901GG>AA	uc002zdf.2	-	14	2200_2201	c.2073_2074CC>TT	c.(2071-2076)GGCCCT>GGTTCT	p.P692S		NM_173354	NP_775490	P57059	SIK1_HUMAN	salt-inducible kinase 1	692					anoikis|cell cycle|cell differentiation|intracellular protein kinase cascade|multicellular organismal development|regulation of cell differentiation|regulation of mitotic cell cycle	nucleus	ATP binding|magnesium ion binding|protein binding|protein serine/threonine kinase activity			lung(2)|testis(2)|ovary(1)|central_nervous_system(1)|skin(1)	7						GCAGCCCCAGGGCCATCACAGG	0.757000													3	0					0	0	0.004672	0	0
TRPM2	7226	broad.mit.edu	37	21	45795768	45795768	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr21:45795768C>T	uc002zet.1	+	7	1037	c.824C>T	c.(823-825)ACC>ATC	p.T275I	TRPM2_uc002zeu.1_Missense_Mutation_p.T275I|TRPM2_uc002zew.1_Missense_Mutation_p.T275I|TRPM2_uc010gpt.1_Missense_Mutation_p.T275I|TRPM2_uc002zex.1_Missense_Mutation_p.T61I	NM_003307	NP_003298	O94759	TRPM2_HUMAN	transient receptor potential cation channel,	275	Cytoplasmic (Potential).					integral to plasma membrane	ADP-ribose diphosphatase activity|calcium channel activity|sodium channel activity			ovary(1)|central_nervous_system(1)|pancreas(1)	3						GGGAACCTGACCTGCCTAGAC	0.597000													33	51					0	0	0.006230	0	0
POTEH	23784	broad.mit.edu	37	22	16287415	16287415	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr22:16287415C>T	uc010gqp.2	-	1	523	c.471G>A	c.(469-471)TGG>TGA	p.W157*	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_5'UTR|POTEH_uc002zlj.1_5'UTR	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	157										skin(1)	1						CGTAGTCTCCCCAAGGGCCCA	0.592000													67	337					0	0	0.014410	0	0
GGT1	2678	broad.mit.edu	37	22	25024078	25024078	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr22:25024078C>T	uc003aan.1	+	14	1854	c.1367C>T	c.(1366-1368)ACG>ATG	p.T456M	GGT1_uc003aas.1_Missense_Mutation_p.T456M|GGT1_uc003aat.1_Missense_Mutation_p.T456M|GGT1_uc003aau.1_Missense_Mutation_p.T456M|GGT1_uc003aav.1_Missense_Mutation_p.T456M|GGT1_uc003aaw.1_Missense_Mutation_p.T456M|GGT1_uc003aax.1_Missense_Mutation_p.T456M|GGT1_uc003aay.1_Missense_Mutation_p.T112M	NM_013430	NP_038347	P19440	GGT1_HUMAN	gamma-glutamyltransferase 1 precursor	456	Extracellular (Potential).				glutathione biosynthetic process	integral to membrane	acyltransferase activity|gamma-glutamyltransferase activity|protein binding				0					Glutathione(DB00143)	ATGTGCCCGACGATCATGGTG	0.662000													4	154					0	0	0.000602	0	0
ZNRF3	84133	broad.mit.edu	37	22	29383157	29383157	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr22:29383157G>A	uc003aeg.2	+	2	259	c.94G>A	c.(94-96)GAC>AAC	p.D32N	ZNRF3_uc003aeh.1_Missense_Mutation_p.D32N	NM_032173	NP_115549	Q9ULT6	ZNRF3_HUMAN	zinc and ring finger 3	132	Extracellular (Potential).					integral to membrane	zinc ion binding			ovary(1)	1						GCCAGAATTGGACCCGAAACC	0.488000													12	123					0	0	0.001855	0	0
AP1B1	162	broad.mit.edu	37	22	29726376	29726376	+	Silent	SNP	G	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr22:29726376G>T	uc003afj.2	-	21	2941	c.2757C>A	c.(2755-2757)CCC>CCA	p.P919P	AP1B1_uc003afi.2_Silent_p.P912P|AP1B1_uc003afk.2_Silent_p.P912P|AP1B1_uc003afl.2_Silent_p.P892P|AP1B1_uc003afh.2_Silent_p.P116P|AP1B1_uc011ako.1_Silent_p.P472P	NM_001127	NP_001118	Q10567	AP1B1_HUMAN	adaptor-related protein complex 1 beta 1 subunit	919					endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport|regulation of defense response to virus by virus|viral reproduction	clathrin adaptor complex|clathrin coated vesicle membrane|cytosol|Golgi membrane|lysosomal membrane	protein binding|protein transporter activity			ovary(1)|skin(1)	2						CCGTGCAGCTGGGGTTGCCCG	0.687000													21	32					8.34094e-07	8.50963e-07	0.008871	1	0
RAC2	5880	broad.mit.edu	37	22	37627425	37627425	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr22:37627425G>A	uc003arc.2	-	5	411	c.294C>T	c.(292-294)TTC>TTT	p.F98F		NM_002872	NP_002863	P15153	RAC2_HUMAN	ras-related C3 botulinum toxin substrate 2	98					axon guidance|platelet activation|regulation of hydrogen peroxide metabolic process|regulation of respiratory burst|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytosol|plasma membrane	GTP binding|GTPase activity|protein binding			breast(2)|central_nervous_system(1)|skin(1)	4						GCACTTCTGGGAACCACTGGG	0.627000													40	29					0	0	0.014410	0	0
GRM7	2917	broad.mit.edu	37	3	6903229	6903230	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:6903229_6903230GG>AA	uc003bqm.2	+	1	428_429	c.154_155GG>AA	c.(154-156)GGG>AAG	p.G52K	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Missense_Mutation_p.G52K|GRM7_uc003bql.2_Missense_Mutation_p.G52K	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	52	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	CGTCACCCTCGGGGGGCTGTTC	0.698000													5	2					0	0	0.004672	0	0
WNT7A	7476	broad.mit.edu	37	3	13860459	13860459	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:13860459C>T	uc003bye.1	-	4	1337	c.1032G>A	c.(1030-1032)GAG>GAA	p.E344E		NM_004625	NP_004616	O00755	WNT7A_HUMAN	wingless-type MMTV integration site family,	344					activation of JUN kinase activity|anterior/posterior pattern formation|canonical Wnt receptor signaling pathway|cell proliferation in forebrain|cellular response to transforming growth factor beta stimulus|central nervous system vasculogenesis|cerebellar granule cell differentiation|dorsal/ventral pattern formation|embryonic axis specification|embryonic digit morphogenesis|embryonic forelimb morphogenesis|embryonic leg morphogenesis|lens fiber cell development|negative regulation of neurogenesis|palate development|positive regulation of canonical Wnt receptor signaling pathway|positive regulation of epithelial cell proliferation involved in wound healing|positive regulation of JNK cascade|positive regulation of synaptogenesis|positive regulation of transcription from RNA polymerase II promoter|regulation of axon diameter|satellite cell activation|satellite cell maintenance involved in skeletal muscle regeneration|sex differentiation|uterus development|Wnt receptor signaling pathway involved in wound healing, spreading of epidermal cells|Wnt receptor signaling pathway, calcium modulating pathway	extracellular space|plasma membrane|proteinaceous extracellular matrix	cytokine activity|frizzled binding|receptor agonist activity|signal transducer activity			ovary(2)|breast(1)	3						ACGTGTACATCTCCGTGCGCT	0.607000													20	21					0	0	0.002780	0	0
EFHB	151651	broad.mit.edu	37	3	19975140	19975140	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:19975140C>T	uc003cbl.3	-	1	567	c.371G>A	c.(370-372)CGG>CAG	p.R124Q	EFHB_uc003cbm.2_Intron	NM_144715	NP_653316	Q8N7U6	EFHB_HUMAN	EF hand domain family, member B	124					signal transduction	proteinaceous extracellular matrix	calcium ion binding				0						CTGTATTATCCGTTCATGGGT	0.507000													45	45					0	0	0.014410	0	0
UBP1	7342	broad.mit.edu	37	3	33454280	33454280	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:33454280A>C	uc003cfq.3	-	4	912	c.382T>G	c.(382-384)TAC>GAC	p.Y128D	UBP1_uc003cfr.3_Missense_Mutation_p.Y128D|UBP1_uc010hga.2_Missense_Mutation_p.Y128D	NM_014517	NP_055332	Q9NZI7	UBIP1_HUMAN	upstream binding protein 1 (LBP-1a) isoform a	128					negative regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|viral genome replication	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			kidney(2)	2						TGCTCTGTGTATTGTAGCCGT	0.443000													5	185					0	0	0.001168	0	0
ARPP21	10777	broad.mit.edu	37	3	35748557	35748557	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:35748557G>A	uc003cgb.2	+	10	1042	c.778G>A	c.(778-780)GAT>AAT	p.D260N	ARPP21_uc003cga.2_Missense_Mutation_p.D260N|ARPP21_uc011axy.1_Missense_Mutation_p.D260N|ARPP21_uc003cgf.2_Missense_Mutation_p.D96N	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	260						cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						CTCTAGTATTGATAAAGAAGA	0.418000													33	43					0	0	0.006999	0	0
SCN5A	6331	broad.mit.edu	37	3	38648273	38648273	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:38648273T>C	uc003cio.2	-	9	1221	c.1027A>G	c.(1027-1029)AAG>GAG	p.K343E	SCN5A_uc003cin.2_Missense_Mutation_p.K343E|SCN5A_uc003cil.3_Missense_Mutation_p.K343E|SCN5A_uc010hhi.2_Missense_Mutation_p.K343E|SCN5A_uc010hhk.2_Missense_Mutation_p.K343E|SCN5A_uc011ayr.1_Missense_Mutation_p.K343E|SCN5A_uc010hhj.1_5'Flank	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	343					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TCGCCTGCCTTTAGGCACCGG	0.617000													43	55					0	0	0.014410	0	0
CCR8	1237	broad.mit.edu	37	3	39374607	39374607	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:39374607C>T	uc010hhr.2	+	2	923	c.785C>T	c.(784-786)TCC>TTC	p.S262F	CCR8_uc003cjm.2_Missense_Mutation_p.S179F	NM_005201	NP_005192	P51685	CCR8_HUMAN	chemokine (C-C motif) receptor 8	262	Helical; Name=6; (Potential).				cell adhesion|chemotaxis|elevation of cytosolic calcium ion concentration|immune response	integral to plasma membrane	coreceptor activity			ovary(1)|lung(1)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0504)|Kidney(284;0.0635)		TTCCTCACTTCCTTGCACAGT	0.453000													25	27					0	0	0.008361	0	0
CCDC13	152206	broad.mit.edu	37	3	42777380	42777380	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:42777380A>C	uc003cly.3	-	10	1274	c.1190T>G	c.(1189-1191)ATC>AGC	p.I397S		NM_144719	NP_653320	Q8IYE1	CCD13_HUMAN	coiled-coil domain containing 13	397	Potential.									ovary(1)	1						GCTGCCTAGGATCTCCTGTAG	0.622000													10	16					0	0	0.013537	0	0
KIF15	56992	broad.mit.edu	37	3	44867637	44867637	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:44867637C>T	uc003cnx.3	+	21	2805	c.2656C>T	c.(2656-2658)CAA>TAA	p.Q886*	KIF15_uc010hiq.2_Nonsense_Mutation_p.Q789*|KIF15_uc010hir.2_5'UTR	NM_020242	NP_064627	Q9NS87	KIF15_HUMAN	kinesin family member 15	886	Potential.				blood coagulation|cell proliferation|microtubule-based movement|mitosis	centrosome|cytosol|microtubule|plus-end kinesin complex|spindle	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0099)|KIRC - Kidney renal clear cell carcinoma(197;0.0564)|Kidney(197;0.0707)		AAGAAACCTCCAAAACTTCAA	0.289000													42	59					0	0	0.007835	0	0
LTF	4057	broad.mit.edu	37	3	46490500	46490500	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:46490500C>T	uc003cpq.2	-	9	1104	c.1066G>A	c.(1066-1068)GAA>AAA	p.E356K	LTF_uc003fzr.2_Missense_Mutation_p.E312K|LTF_uc010hjh.2_Missense_Mutation_p.E356K|LTF_uc003cpr.2_Missense_Mutation_p.E343K	NM_002343	NP_002334	P02788	TRFL_HUMAN	lactotransferrin precursor	356					cellular iron ion homeostasis|defense response to bacterium|humoral immune response|iron ion transport	extracellular region|stored secretory granule	ferric iron binding|heparin binding|protein binding|serine-type endopeptidase activity			central_nervous_system(2)|ovary(1)|lung(1)	4				all cancers(1;7.55e-14)|GBM - Glioblastoma multiforme(1;2.1e-09)|Epithelial(1;9.25e-07)|Colorectal(1;3.81e-05)|BRCA - Breast invasive adenocarcinoma(193;0.00129)|COAD - Colon adenocarcinoma(1;0.00308)|KIRC - Kidney renal clear cell carcinoma(197;0.0205)|Kidney(197;0.0242)|OV - Ovarian serous cystadenocarcinoma(275;0.089)	Pefloxacin(DB00487)	GCAGCCACTTCCTCCTCACCT	0.662000													14	22					0	0	0.004007	0	0
COL7A1	1294	broad.mit.edu	37	3	48619788	48619788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:48619788C>T	uc003ctz.2	-	46	4604	c.4603G>A	c.(4603-4605)GAG>AAG	p.E1535K		NM_000094	NP_000085	Q02388	CO7A1_HUMAN	alpha 1 type VII collagen precursor	1535	Triple-helical region.				cell adhesion|epidermis development	basement membrane|collagen type VII	protein binding|serine-type endopeptidase inhibitor activity			ovary(4)|breast(3)|skin(3)|central_nervous_system(1)	11				BRCA - Breast invasive adenocarcinoma(193;0.000293)|KIRC - Kidney renal clear cell carcinoma(197;0.00558)|Kidney(197;0.00632)		CGACCAGGCTCCCCCTGTGGA	0.607000													67	83					0	0	0.014410	0	0
RHOA	387	broad.mit.edu	37	3	49397710	49397710	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:49397710C>T	uc003cwu.2	-	5	790	c.514G>A	c.(514-516)GAA>AAA	p.E172K	RHOA_uc010hku.2_Missense_Mutation_p.E91K|GPX1_uc011bcl.1_5'Flank|GPX1_uc011bcm.1_5'Flank	NM_001664	NP_001655	P61586	RHOA_HUMAN	ras homolog gene family, member A precursor	172					axon guidance|interspecies interaction between organisms|negative regulation of axonogenesis|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|platelet activation|positive regulation of axonogenesis|positive regulation of I-kappaB kinase/NF-kappaB cascade|positive regulation of neuron differentiation|positive regulation of NF-kappaB import into nucleus|positive regulation of stress fiber assembly|regulation of cell migration|regulation of small GTPase mediated signal transduction|Rho protein signal transduction|spindle assembly involved in mitosis	cytoskeleton|cytosol|plasma membrane	GTP binding|GTPase activity|myosin binding			ovary(2)	2				BRCA - Breast invasive adenocarcinoma(193;8.58e-05)|Kidney(197;0.0023)|KIRC - Kidney renal clear cell carcinoma(197;0.00258)	Atorvastatin(DB01076)|Simvastatin(DB00641)	GTAGCCATTTCAAAAACCTCT	0.483000													67	69					0	0	0.014410	0	0
CAMKV	79012	broad.mit.edu	37	3	49898227	49898227	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:49898227C>T	uc003cxt.1	-	8	890	c.697G>A	c.(697-699)GAT>AAT	p.D233N	CAMKV_uc011bcy.1_Missense_Mutation_p.D158N|CAMKV_uc003cxv.1_Missense_Mutation_p.D205N|CAMKV_uc003cxw.1_Missense_Mutation_p.D65N|CAMKV_uc003cxx.1_Missense_Mutation_p.D65N|CAMKV_uc003cxu.2_Missense_Mutation_p.D233N|CAMKV_uc011bcz.1_Missense_Mutation_p.D196N|CAMKV_uc011bda.1_Missense_Mutation_p.D190N|CAMKV_uc011bdb.1_RNA	NM_024046	NP_076951	Q8NCB2	CAMKV_HUMAN	CaM kinase-like vesicle-associated	233	Protein kinase.					cytoplasmic vesicle membrane|plasma membrane	ATP binding|protein serine/threonine kinase activity			ovary(2)|lung(2)|large_intestine(2)|central_nervous_system(1)	7				BRCA - Breast invasive adenocarcinoma(193;4.62e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.00551)|Kidney(197;0.00621)		AGATTCTTATCATGGTTCTCA	0.498000													84	114					0	0	0.014410	0	0
RETNLB	84666	broad.mit.edu	37	3	108475982	108475982	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:108475982C>T	uc003dxh.2	-	1	149	c.51G>A	c.(49-51)CTG>CTA	p.L17L		NM_032579	NP_115968	Q9BQ08	RETNB_HUMAN	resistin like beta precursor	17					cell proliferation	extracellular region	hormone activity			skin(1)	1						CCGGGTTGATCAGCTGGAGAA	0.522000													21	18					0	0	0.008361	0	0
KALRN	8997	broad.mit.edu	37	3	124103861	124103861	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:124103861C>T	uc003ehg.2	+	11	2061	c.1934C>T	c.(1933-1935)TCC>TTC	p.S645F	KALRN_uc010hrv.1_Missense_Mutation_p.S645F|KALRN_uc003ehf.1_Missense_Mutation_p.S645F|KALRN_uc011bjy.1_Missense_Mutation_p.S645F|KALRN_uc003ehh.1_Missense_Mutation_p.S4F	NM_001024660	NP_001019831	O60229	KALRN_HUMAN	kalirin, RhoGEF kinase isoform 1	645					apoptosis|induction of apoptosis by extracellular signals|nerve growth factor receptor signaling pathway|nervous system development|regulation of Rho protein signal transduction|small GTPase mediated signal transduction|vesicle-mediated transport	actin cytoskeleton|cytosol	ATP binding|GTPase activator activity|metal ion binding|protein binding|protein serine/threonine kinase activity|Rho guanyl-nucleotide exchange factor activity			large_intestine(2)|ovary(2)|central_nervous_system(1)|skin(1)	6						ATGTCTGTTTCCTTCCACACA	0.572000													31	57					0	0	0.009718	0	0
GATA2	2624	broad.mit.edu	37	3	128204653	128204653	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:128204653C>T	uc003ekm.3	-	4	1223	c.788G>A	c.(787-789)GGA>GAA	p.G263E	GATA2_uc003ekn.3_Missense_Mutation_p.G263E|GATA2_uc003eko.2_Missense_Mutation_p.G263E	NM_001145661	NP_001139133	P23769	GATA2_HUMAN	GATA binding protein 2 isoform 1	263					blood coagulation|negative regulation of fat cell differentiation|negative regulation of fat cell proliferation|negative regulation of neural precursor cell proliferation|negative regulation of Notch signaling pathway|phagocytosis|positive regulation of angiogenesis|positive regulation of phagocytosis|positive regulation of transcription from RNA polymerase II promoter	nucleoplasm	C2H2 zinc finger domain binding|chromatin binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription factor binding|zinc ion binding			haematopoietic_and_lymphoid_tissue(13)|lung(1)|skin(1)	15				GBM - Glioblastoma multiforme(114;0.173)		GTGGAAGAGTCCGCTGCTGTA	0.657000			Mis		AML(CML blast transformation)								15	10					0	0	0.006122	0	0
IGSF10	285313	broad.mit.edu	37	3	151155258	151155258	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:151155258T>G	uc011bod.1	-	6	7091	c.7091A>C	c.(7090-7092)AAC>ACC	p.N2364T	IGSF10_uc011bob.1_Missense_Mutation_p.N391T|IGSF10_uc011boc.1_Missense_Mutation_p.N343T	NM_178822	NP_849144	Q6WRI0	IGS10_HUMAN	immunoglobulin superfamily, member 10 precursor	2364	Ig-like C2-type 10.				cell differentiation|multicellular organismal development|ossification	extracellular region				skin(7)|ovary(5)|central_nervous_system(1)	13			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0517)			AGGTGGTGGGTTACCATCAAC	0.393000													72	84					0	0	0.014410	0	0
SUCNR1	56670	broad.mit.edu	37	3	151598433	151598433	+	Silent	SNP	C	T	T	rs145165680		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:151598433C>T	uc003ezf.1	+	3	201	c.102C>T	c.(100-102)TTC>TTT	p.F34F		NM_033050	NP_149039	Q9BXA5	SUCR1_HUMAN	succinate receptor 1	34	Helical; Name=1; (Potential).					integral to membrane|plasma membrane	purinergic nucleotide receptor activity, G-protein coupled			ovary(1)	1			LUSC - Lung squamous cell carcinoma(72;0.0394)|Lung(72;0.0813)		Succinic acid(DB00139)	GGATTGAGTTCGTTGTGGGAG	0.423000													72	115					0	0	0.014410	0	0
ZBBX	79740	broad.mit.edu	37	3	166958628	166958628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:166958628G>A	uc003fep.2	-	21	2679	c.2356C>T	c.(2356-2358)CTC>TTC	p.L786F	ZBBX_uc011bpc.1_Missense_Mutation_p.L825F|ZBBX_uc003feq.2_Missense_Mutation_p.L757F	NM_024687	NP_078963	A8MT70	ZBBX_HUMAN	zinc finger, B-box domain containing	786						intracellular	zinc ion binding			ovary(2)	2						TGCTTGTTGAGAAAATCTTCC	0.378000													27	47					0	0	0.007291	0	0
WDR49	151790	broad.mit.edu	37	3	167249033	167249033	+	Silent	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr3:167249033T>C	uc003fev.1	-	9	1338	c.1032A>G	c.(1030-1032)AGA>AGG	p.R344R	WDR49_uc003feu.1_Silent_p.R169R|WDR49_uc011bpd.1_Silent_p.R408R|WDR49_uc003few.1_Intron	NM_178824	NP_849146	Q8IV35	WDR49_HUMAN	WD repeat domain 49	344										large_intestine(1)|ovary(1)|skin(1)	3						AGGGTTGGCTTCTCCCAGCAC	0.433000													28	35					0	0	0.012213	0	0
FAM193A	8603	broad.mit.edu	37	4	2661598	2661599	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:2661598_2661599CC>TT	uc010icl.2	+	8	1040_1041	c.689_690CC>TT	c.(688-690)CCC>CTT	p.P230L	FAM193A_uc010ick.2_Missense_Mutation_p.P430L|FAM193A_uc003gfd.2_Missense_Mutation_p.P230L|FAM193A_uc011bvm.1_Missense_Mutation_p.P254L|FAM193A_uc011bvn.1_Missense_Mutation_p.P230L|FAM193A_uc011bvo.1_RNA|FAM193A_uc010icm.2_RNA|FAM193A_uc003gfe.2_Missense_Mutation_p.P84L	NM_003704	NP_003695	P78312	F193A_HUMAN	hypothetical protein LOC8603	230										ovary(3)	3						ATGGACCCCCCCGTCACTGATG	0.525000													78	92					0	0	0.004672	0	0
C4orf23	152992	broad.mit.edu	37	4	8469812	8469812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:8469812G>A	uc003glg.1	+	9	1167	c.979G>A	c.(979-981)GGT>AGT	p.G327S	C4orf23_uc003glf.1_Missense_Mutation_p.G315S|C4orf23_uc003glh.1_Missense_Mutation_p.G164S	NM_152544	NP_689757	Q8IYL2	TRM44_HUMAN	hypothetical protein LOC152992 isoform 2	556					tRNA processing	cytoplasm	methyltransferase activity|nucleic acid binding|zinc ion binding				0						TCACTGTGACGGTCAGCAAGC	0.642000													9	13					0	0	0.006214	0	0
HSP90AB2P	391634	broad.mit.edu	37	4	13338800	13338800	+	RNA	SNP	G	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:13338800G>C	uc003gms.2	+	1		c.3764G>C				NR_003132				Homo sapiens heat shock protein 90Bb (HSP90Bb) mRNA, complete cds.											kidney(1)	1						Cagaggaagagaaaggtgaga	0.204000													5	2					0	0	0.000602	0	0
RFC1	5981	broad.mit.edu	37	4	39328223	39328223	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:39328223T>A	uc003gty.1	-	6	736	c.602A>T	c.(601-603)GAA>GTA	p.E201V	RFC1_uc003gtx.1_Missense_Mutation_p.E201V|RFC1_uc003gtz.1_Missense_Mutation_p.E85V	NM_002913	NP_002904	P35251	RFC1_HUMAN	replication factor C large subunit	201					DNA strand elongation involved in DNA replication|nucleotide-excision repair, DNA gap filling|regulation of transcription, DNA-dependent|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|telomere maintenance via telomerase|transcription, DNA-dependent|transcription-coupled nucleotide-excision repair	DNA replication factor C complex|nucleoplasm	ATP binding|DNA clamp loader activity|enzyme activator activity|protein binding			ovary(2)|pancreas(1)|skin(1)	4						GGCGATGGCTTCATCATTTAA	0.333000													24	31					0	0	0.004656	0	0
GABRA2	2555	broad.mit.edu	37	4	46307593	46307593	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:46307593G>A	uc003gxc.3	-	6	1368	c.695C>T	c.(694-696)TCC>TTC	p.S232F	GABRA2_uc010igc.2_Missense_Mutation_p.S232F|GABRA2_uc011bzc.1_Missense_Mutation_p.S177F|GABRA2_uc003gxe.2_Missense_Mutation_p.S232F	NM_001114175	NP_001107647	P47869	GBRA2_HUMAN	gamma-aminobutyric acid A receptor, alpha 2	232	Extracellular (Probable).				gamma-aminobutyric acid signaling pathway|neurotransmitter transport|regulation of neurotransmitter levels	cell junction|chloride channel complex|integral to synaptic vesicle membrane|postsynaptic membrane	benzodiazepine receptor activity|chloride channel activity|extracellular ligand-gated ion channel activity|GABA-A receptor activity			ovary(2)|skin(2)	4					Alprazolam(DB00404)|Bromazepam(DB01558)|Diazepam(DB00829)|Ethchlorvynol(DB00189)|Fludiazepam(DB01567)|Flunitrazepam(DB01544)|Flurazepam(DB00690)|Lorazepam(DB00186)|Meprobamate(DB00371)|Midazolam(DB00683)	ACCTGTACTGGATTTAATTGT	0.368000													33	48					0	0	0.010771	0	0
TMPRSS11F	389208	broad.mit.edu	37	4	68934409	68934409	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:68934409C>T	uc003hdt.1	-	7	731	c.682G>A	c.(682-684)GGG>AGG	p.G228R	LOC550112_uc003hdl.3_Intron|uc011cak.1_Intron	NM_207407	NP_997290	Q6ZWK6	TM11F_HUMAN	transmembrane protease, serine 11F	228	Peptidase S1.|Extracellular (Potential).				proteolysis	extracellular region|integral to plasma membrane	serine-type endopeptidase activity			ovary(1)	1						TGGCCTGACCCTATGAGCTGG	0.527000													11	53					0	0	0.010729	0	0
UGT2B10	7365	broad.mit.edu	37	4	69870749	69870749	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:69870749C>T	uc011cao.1	-	9	1437	c.1301G>A	c.(1300-1302)GGA>GAA	p.G434E	UGT2B10_uc011can.1_Missense_Mutation_p.G350E			P36537	UDB10_HUMAN	RecName: Full=UDP-glucuronosyltransferase 2B28;          Short=UDPGT 2B28;          EC=2.4.1.17; Flags: Precursor;	471					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			skin(3)|ovary(2)	5						GTGTTTGGCTCCTTTGTGGCG	0.468000													49	81					0	0	0.014410	0	0
MUC7	4589	broad.mit.edu	37	4	71347185	71347185	+	Missense_Mutation	SNP	T	C	C	rs79807294	by1000genomes	TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:71347185T>C	uc011cat.1	+	4	1012	c.724T>C	c.(724-726)TCT>CCT	p.S242P	MUC7_uc011cau.1_Missense_Mutation_p.S242P|MUC7_uc003hfj.2_Missense_Mutation_p.S242P|uc011cav.1_Intron	NM_001145006	NP_001138478	Q8TAX7	MUC7_HUMAN	mucin 7, secreted precursor	242	Thr-rich.|4.					extracellular region	protein binding			ovary(2)|central_nervous_system(1)|skin(1)	4			Lung(101;0.211)			ACCCACACCTTCTGCAACTAC	0.592000													3	151					0	0	0.009096	0	0
ENAM	10117	broad.mit.edu	37	4	71503549	71503549	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:71503549G>A	uc011caw.1	+	8	858	c.577G>A	c.(577-579)GAA>AAA	p.E193K		NM_031889	NP_114095	Q9NRM1	ENAM_HUMAN	enamelin precursor	193					bone mineralization|odontogenesis	proteinaceous extracellular matrix	structural constituent of tooth enamel			ovary(3)	3			Lung(101;0.235)			AATCAGCAATGAAGAAGGGGG	0.423000													63	84					0	0	0.014410	0	0
TIGD2	166815	broad.mit.edu	37	4	90035698	90035698	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:90035698C>T	uc003hsk.2	+	1	1731	c.1573C>T	c.(1573-1575)CAT>TAT	p.H525Y		NM_145715	NP_663761	Q4W5G0	TIGD2_HUMAN	tigger transposable element derived 2	525					regulation of transcription, DNA-dependent	chromosome, centromeric region|nucleus	DNA binding				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.86e-05)		TAACAAAAATCATTAATAAGG	0.343000													22	27					0	0	0.003954	0	0
ATOH1	474	broad.mit.edu	37	4	94750833	94750833	+	Silent	SNP	C	T	T	rs149770942		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:94750833C>T	uc003hta.1	+	1	756	c.756C>T	c.(754-756)ACC>ACT	p.T252T		NM_005172	NP_005163	Q92858	ATOH1_HUMAN	atonal homolog 1	252					transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding transcription factor activity				0		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;3.57e-07)		GCAACGCGACCGCAGCTGGGG	0.716000													9	10					0	0	0.008291	0	0
BANK1	55024	broad.mit.edu	37	4	102984232	102984232	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:102984232G>A	uc003hvy.3	+	13	2423	c.2149G>A	c.(2149-2151)GAG>AAG	p.E717K	BANK1_uc003hvx.3_Missense_Mutation_p.E702K|BANK1_uc010ill.2_Missense_Mutation_p.E584K|BANK1_uc003hvz.3_Missense_Mutation_p.E687K	NM_017935	NP_060405	Q8NDB2	BANK1_HUMAN	B-cell scaffold protein with ankyrin repeats 1	717					B cell activation					ovary(2)|skin(1)	3		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;2.7e-07)		CCACATTAAGGAGAAATTACG	0.328000													13	29					0	0	0.003163	0	0
NDST4	64579	broad.mit.edu	37	4	115998159	115998159	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:115998159G>A	uc003ibu.2	-	2	713	c.34C>T	c.(34-36)CGA>TGA	p.R12*	NDST4_uc010imw.2_Intron	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	12	Cytoplasmic (Potential).					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		ATCAATGTTCGAAAACTTCTC	0.343000													5	12					0	0	0.000602	0	0
GUCY1A3	2982	broad.mit.edu	37	4	156631873	156631873	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:156631873G>T	uc003iov.2	+	7	1092	c.556G>T	c.(556-558)GAG>TAG	p.E186*	GUCY1A3_uc003iou.2_Nonsense_Mutation_p.E186*|GUCY1A3_uc010iqc.2_Nonsense_Mutation_p.E186*|GUCY1A3_uc003iow.2_Nonsense_Mutation_p.E186*|GUCY1A3_uc010iqd.2_Nonsense_Mutation_p.E185*|GUCY1A3_uc003iox.2_Nonsense_Mutation_p.E186*|GUCY1A3_uc003ioz.2_5'UTR|GUCY1A3_uc003ioy.2_Nonsense_Mutation_p.E186*|GUCY1A3_uc010iqe.2_5'UTR|GUCY1A3_uc003ipa.2_Intron|GUCY1A3_uc003ipb.2_Nonsense_Mutation_p.E186*	NM_000856	NP_000847	Q02108	GCYA3_HUMAN	guanylate cyclase 1, soluble, alpha 3 isoform A	186					blood circulation|intracellular signal transduction|nitric oxide mediated signal transduction|platelet activation	guanylate cyclase complex, soluble	GTP binding|guanylate cyclase activity|heme binding|receptor activity			central_nervous_system(2)|ovary(1)|skin(1)	4	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.17)		GGGCAGGCTTGAGGACGCCTC	0.473000													16	22					2.31682e-05	2.34785e-05	0.003163	1	0
VEGFC	7424	broad.mit.edu	37	4	177605141	177605141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:177605141G>A	uc003ius.1	-	7	1629	c.1199C>T	c.(1198-1200)TCA>TTA	p.S400L		NM_005429	NP_005420	P49767	VEGFC_HUMAN	vascular endothelial growth factor C	400					angiogenesis|induction of positive chemotaxis|platelet activation|platelet degranulation|positive regulation of cell division|positive regulation of mast cell chemotaxis|substrate-dependent cell migration|vascular endothelial growth factor receptor signaling pathway	membrane|platelet alpha granule lumen	chemoattractant activity|growth factor activity			lung(5)	5		Breast(14;0.000223)|Renal(120;0.00988)|Prostate(90;0.00996)|Melanoma(52;0.0101)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;1.59e-18)|Epithelial(43;3.68e-16)|OV - Ovarian serous cystadenocarcinoma(60;8.52e-09)|GBM - Glioblastoma multiforme(59;0.000546)|STAD - Stomach adenocarcinoma(60;0.00308)|Colorectal(24;0.025)|COAD - Colon adenocarcinoma(29;0.0359)|LUSC - Lung squamous cell carcinoma(193;0.0397)		TTCACTATATGAAAATCCTGG	0.408000													38	47					0	0	0.006999	0	0
NKD2	85409	broad.mit.edu	37	5	1034917	1034917	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:1034917C>T	uc003jbt.1	+	7	478	c.473C>T	c.(472-474)TCG>TTG	p.S158L	NKD2_uc010itf.1_Missense_Mutation_p.S158L	NM_033120	NP_149111	Q969F2	NKD2_HUMAN	naked cuticle homolog 2	158	Interaction with DVL1, DVL2 and DVL3 (By similarity).|Targeting to the basolateral cell membrane.				exocytosis|Wnt receptor signaling pathway	cytoplasmic membrane-bounded vesicle|plasma membrane	calcium ion binding|ubiquitin protein ligase binding				0	Lung NSC(6;2.47e-13)|all_lung(6;1.67e-12)|all_epithelial(6;3.28e-09)		Epithelial(17;0.00093)|OV - Ovarian serous cystadenocarcinoma(19;0.00239)|all cancers(22;0.00417)|Lung(60;0.165)			GTGGATGCCTCGGTCAACCAC	0.627000													28	56					0	0	0.013726	0	0
TAS2R1	50834	broad.mit.edu	37	5	9629909	9629909	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:9629909G>A	uc003jem.1	-	1	555	c.236C>T	c.(235-237)TCT>TTT	p.S79F		NM_019599	NP_062545	Q9NYW7	TA2R1_HUMAN	taste receptor T2R1	79	Extracellular (Potential).				chemosensory behavior|sensory perception of taste	integral to membrane	taste receptor activity			ovary(3)	3						ACAATTCGCAGAACACATGAT	0.398000													10	15					0	0	0.006214	0	0
DNAH5	1767	broad.mit.edu	37	5	13876855	13876855	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:13876855C>T	uc003jfd.2	-	22	3376	c.3334G>A	c.(3334-3336)GAA>AAA	p.E1112K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1112	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TCTTTGTTTTCAGAAACATTC	0.353000									Kartagener_syndrome				20	28					0	0	0.012319	0	0
DNAH5	1767	broad.mit.edu	37	5	13900416	13900416	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:13900416C>T	uc003jfd.2	-	15	2200	c.2158G>A	c.(2158-2160)GAA>AAA	p.E720K		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	720	Stem (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					CACTCTGTTTCTCTAAATAAG	0.423000									Kartagener_syndrome				35	62					0	0	0.007835	0	0
UGT3A1	133688	broad.mit.edu	37	5	35968190	35968190	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:35968190G>A	uc003jjv.1	-	3	399	c.242C>T	c.(241-243)TCA>TTA	p.S81L	UGT3A1_uc003jjw.1_RNA|UGT3A1_uc011coq.1_Missense_Mutation_p.S81L|UGT3A1_uc011cor.1_Missense_Mutation_p.S47L|UGT3A1_uc003jjy.1_Missense_Mutation_p.S27L	NM_152404	NP_689617	Q6NUS8	UD3A1_HUMAN	UDP glycosyltransferase 3 family, polypeptide A1	81	Extracellular (Potential).					integral to membrane	glucuronosyltransferase activity			ovary(2)|central_nervous_system(1)	3	all_lung(31;0.000197)		Epithelial(62;0.107)|Lung(74;0.111)|COAD - Colon adenocarcinoma(61;0.14)|Colorectal(62;0.202)			ATCTTCAGGTGAAAACCACCT	0.318000													9	29					0	0	0.008291	0	0
OSMR	9180	broad.mit.edu	37	5	38917663	38917663	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:38917663C>T	uc003jln.1	+	10	1668	c.1301C>T	c.(1300-1302)CCT>CTT	p.P434L	OSMR_uc011cpj.1_5'UTR	NM_003999	NP_003990	Q99650	OSMR_HUMAN	oncostatin M receptor precursor	434	Fibronectin type-III 2.|Extracellular (Potential).				cell proliferation|positive regulation of cell proliferation	oncostatin-M receptor complex	growth factor binding|oncostatin-M receptor activity			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5	all_lung(31;0.000365)					TCAGAGGCCCCTGATGTCTGG	0.413000													45	38					0	0	0.014410	0	0
HEATR7B2	133558	broad.mit.edu	37	5	41018831	41018831	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:41018831C>T	uc003jmj.3	-	26	3125	c.2635G>A	c.(2635-2637)GAT>AAT	p.D879N	HEATR7B2_uc003jmi.3_Missense_Mutation_p.D434N	NM_173489	NP_775760	Q7Z745	HTRB2_HUMAN	HEAT repeat family member 7B2	879							binding			ovary(6)|central_nervous_system(2)	8						TTCACATTATCCCACATCATG	0.428000													18	35					0	0	0.010504	0	0
MAST4	375449	broad.mit.edu	37	5	66458601	66458602	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:66458601_66458602CC>TT	uc003jut.1	+	27	3453_3454	c.3385_3386CC>TT	c.(3385-3387)CCT>TTT	p.P1129F	MAST4_uc003juw.2_Missense_Mutation_p.P1057F	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1321	Ser-rich.					cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity	p.P1321S(1)		lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCGCTCCACCCCTGACTTCCCA	0.559000													19	15					0	0	0.004672	0	0
SV2C	22987	broad.mit.edu	37	5	75587088	75587088	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:75587088G>A	uc003kei.1	+	7	1314	c.1180G>A	c.(1180-1182)GAA>AAA	p.E394K		NM_014979	NP_055794	Q496J9	SV2C_HUMAN	synaptic vesicle glycoprotein 2C	394	Cytoplasmic (Potential).				neurotransmitter transport	cell junction|integral to membrane|synaptic vesicle membrane	transmembrane transporter activity			skin(1)	1		all_lung(232;0.007)|Lung NSC(167;0.0148)|Ovarian(174;0.0798)|Prostate(461;0.184)		OV - Ovarian serous cystadenocarcinoma(47;1.16e-50)|all cancers(79;7.25e-40)		TGAGCTGATTGAAATTGAGAG	0.423000													34	41					0	0	0.007835	0	0
SLCO6A1	133482	broad.mit.edu	37	5	101834497	101834497	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:101834497C>T	uc003knn.2	-	1	224	c.52G>A	c.(52-54)GGA>AGA	p.G18R	SLCO6A1_uc003kno.2_Missense_Mutation_p.G18R|SLCO6A1_uc003knp.2_Missense_Mutation_p.G18R|SLCO6A1_uc003knq.2_Missense_Mutation_p.G18R	NM_173488	NP_775759	Q86UG4	SO6A1_HUMAN	solute carrier organic anion transporter family,	18	Cytoplasmic (Potential).					integral to membrane|plasma membrane	transporter activity			ovary(3)|skin(3)|central_nervous_system(1)	7		all_cancers(142;8e-09)|all_epithelial(76;2.83e-12)|Prostate(80;0.00125)|Colorectal(57;0.00342)|Ovarian(225;0.024)|Lung NSC(167;0.0259)|all_lung(232;0.0323)		Epithelial(69;1.47e-15)|COAD - Colon adenocarcinoma(37;0.0113)		GGCTCTACTCCCCTTGAGACT	0.672000													22	105					0	0	0.014323	0	0
PAM	5066	broad.mit.edu	37	5	102363938	102363938	+	Silent	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:102363938T>C	uc003knw.2	+	24	3112	c.2739T>C	c.(2737-2739)TTT>TTC	p.F913F	PAM_uc003kns.2_Silent_p.F806F|PAM_uc003knt.2_Silent_p.F914F|PAM_uc003knu.2_Silent_p.F845F|PAM_uc003knv.2_Intron|PAM_uc011cuz.1_Silent_p.F815F|PAM_uc003knz.2_Intron	NM_000919	NP_000910	P19021	AMD_HUMAN	peptidylglycine alpha-amidating monooxygenase	913	Cytoplasmic (Potential).				peptide metabolic process|protein modification process	extracellular region|integral to membrane|stored secretory granule	L-ascorbic acid binding|peptidylamidoglycolate lyase activity|peptidylglycine monooxygenase activity|protein binding				0		all_cancers(142;3.12e-07)|all_epithelial(76;3.48e-10)|Prostate(80;0.00914)|Lung NSC(167;0.0213)|Ovarian(225;0.024)|Colorectal(57;0.0251)|all_lung(232;0.0284)		Epithelial(69;1.1e-13)|COAD - Colon adenocarcinoma(37;0.0127)	Vitamin C(DB00126)	TGGGAAGATTTAGAGGTATGC	0.373000													45	57					0	0	0.014410	0	0
FTMT	94033	broad.mit.edu	37	5	121187989	121187989	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:121187989T>G	uc003kss.2	+	1	340	c.331T>G	c.(331-333)TTC>GTC	p.F111V		NM_177478	NP_803431	Q8N4E7	FTMT_HUMAN	ferritin mitochondrial precursor	111	Ferritin-like diiron.				cellular iron ion homeostasis|iron ion transport|positive regulation of cell proliferation|positive regulation of lyase activity|positive regulation of oxidoreductase activity|positive regulation of transferase activity	mitochondrion	ferric iron binding|ferroxidase activity			ovary(1)	1		all_cancers(142;0.0124)|Prostate(80;0.0322)	KIRC - Kidney renal clear cell carcinoma(527;0.206)	Epithelial(69;0.000171)|OV - Ovarian serous cystadenocarcinoma(64;0.000188)|all cancers(49;0.0027)		CTTGAACAACTTCTCCAGGTA	0.587000													20	21					0	0	0.003954	0	0
PCDHAC2	56134	broad.mit.edu	37	5	140348353	140348353	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:140348353C>T	uc003lii.2	+	1	2242	c.2002C>T	c.(2002-2004)CCA>TCA	p.P668S	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Intron|PCDHA5_uc003lhl.2_Intron|PCDHA6_uc003lhn.2_Intron|PCDHA6_uc003lho.2_Intron|PCDHA7_uc003lhq.2_Intron|PCDHA8_uc003lhs.2_Intron|PCDHA9_uc003lhu.2_Intron|PCDHA10_uc003lhw.2_Intron|PCDHA10_uc003lhx.2_Intron|PCDHA11_uc003lia.2_Intron|PCDHA12_uc003lic.2_Intron|PCDHA13_uc003lie.1_Intron|PCDHA13_uc003lif.2_Intron|PCDHAC1_uc003lih.2_Intron|PCDHAC2_uc011dag.1_Missense_Mutation_p.P668S	NM_018899	NP_061722	Q9Y5I4	PCDC2_HUMAN	protocadherin alpha subfamily C, 2 isoform 1	668	Cadherin 6.|Extracellular (Potential).				homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding			ovary(2)|skin(2)	4			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			TAATGGAGAGCCATCACTATC	0.507000													14	65					0	0	0.001855	0	0
PCDHB3	56132	broad.mit.edu	37	5	140481150	140481150	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:140481150A>C	uc003lio.2	+	1	917	c.917A>C	c.(916-918)TAT>TCT	p.Y306S	uc003lin.2_Intron	NM_018937	NP_061760	Q9Y5E6	PCDB3_HUMAN	protocadherin beta 3 precursor	306	Extracellular (Potential).|Cadherin 3.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to plasma membrane	calcium ion binding			ovary(1)|pancreas(1)	2			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CTGGTCAAATATTTGAATTTT	0.388000													24	30					0	0	0.005443	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517327	140517327	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:140517327C>T	uc003liq.2	+	1	2528	c.2311C>T	c.(2311-2313)CCT>TCT	p.P771S		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	771	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			GCCGATTATTCCTAACCTTTT	0.532000													61	114					0	0	0.014410	0	0
PCDHB18	54660	broad.mit.edu	37	5	140615668	140615668	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:140615668C>T	uc003ljc.1	+	1	1731	c.1383C>T	c.(1381-1383)TTC>TTT	p.F461F		NR_001281				SubName: Full=Similar to protocadherin-3 (Pcdh3);											ovary(1)	1						GCCACCTATTCGCCCTCAGGT	0.687000													90	132					0	0	0.014410	0	0
PCDHGB5	56101	broad.mit.edu	37	5	140779095	140779095	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:140779095C>T	uc003lkf.1	+	1	1401	c.1401C>T	c.(1399-1401)ATC>ATT	p.I467I	PCDHGA1_uc003lji.1_Intron|PCDHGA2_uc003ljk.1_Intron|PCDHGA3_uc003ljm.1_Intron|PCDHGA3_uc010jfx.1_Intron|PCDHGB1_uc003ljo.1_Intron|PCDHGA4_uc003ljq.1_Intron|PCDHGB2_uc003ljs.1_Intron|PCDHGA5_uc003lju.1_Intron|PCDHGB3_uc003ljw.1_Intron|PCDHGA6_uc003ljy.1_Intron|PCDHGA7_uc003lka.1_Intron|PCDHGB4_uc003lkc.1_Intron|PCDHGA8_uc003lkd.1_Intron|PCDHGB5_uc011daw.1_Silent_p.I467I	NM_018925	NP_061748	Q9Y5G0	PCDGH_HUMAN	protocadherin gamma subfamily B, 5 isoform 1	467	Extracellular (Potential).|Cadherin 5.				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGGCCTCCATCGCGCAAGTCT	0.567000													23	28					0	0	0.010818	0	0
TCERG1	10915	broad.mit.edu	37	5	145883511	145883511	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:145883511G>A	uc003lob.2	+	18	2712	c.2672G>A	c.(2671-2673)AGA>AAA	p.R891K	TCERG1_uc003loc.2_Missense_Mutation_p.R870K	NM_006706	NP_006697	O14776	TCRG1_HUMAN	transcription elongation regulator 1 isoform 1	891	Potential.				regulation of transcription, DNA-dependent|transcription from RNA polymerase II promoter	nucleus	protein binding|transcription coactivator activity			ovary(1)|skin(1)	2		Lung NSC(249;0.00188)|all_lung(500;0.00307)|all_neural(839;0.0424)|Breast(839;0.0743)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			GATCGAGAGAGAGAGCAGCAC	0.423000													22	43					0	0	0.004656	0	0
FAT2	2196	broad.mit.edu	37	5	150945297	150945297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:150945297C>T	uc003lue.3	-	1	3209	c.3196G>A	c.(3196-3198)GAG>AAG	p.E1066K	GM2A_uc011dcs.1_Intron|FAT2_uc010jhx.1_Missense_Mutation_p.E1066K	NM_001447	NP_001438	Q9NYQ8	FAT2_HUMAN	FAT tumor suppressor 2 precursor	1066	Cadherin 9.|Extracellular (Potential).				epithelial cell migration|homophilic cell adhesion	cell-cell adherens junction|integral to membrane|nucleus	calcium ion binding			ovary(4)|upper_aerodigestive_tract(1)|skin(1)	6		Medulloblastoma(196;0.0912)|all_hematologic(541;0.104)	KIRC - Kidney renal clear cell carcinoma(527;0.000785)|Kidney(363;0.00101)			TACTGGAGCTCCCCATCCAAG	0.622000													24	19					0	0	0.003954	0	0
GRIA1	2890	broad.mit.edu	37	5	152873538	152873538	+	Missense_Mutation	SNP	G	C	C	rs147434856		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:152873538G>C	uc003lva.3	+	2	498	c.133G>C	c.(133-135)GCT>CCT	p.A45P	GRIA1_uc003luy.3_Missense_Mutation_p.A45P|GRIA1_uc003luz.3_5'UTR|GRIA1_uc011dcv.1_Intron|GRIA1_uc011dcw.1_Missense_Mutation_p.A45P|GRIA1_uc011dcx.1_5'UTR|GRIA1_uc011dcy.1_Missense_Mutation_p.A55P|GRIA1_uc011dcz.1_Missense_Mutation_p.A55P|GRIA1_uc010jia.1_Missense_Mutation_p.A25P	NM_001114183	NP_001107655	P42261	GRIA1_HUMAN	glutamate receptor, ionotropic, AMPA 1 isoform	45	Extracellular (Potential).				synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|dendritic spine|endocytic vesicle membrane|endoplasmic reticulum membrane|neuronal cell body|postsynaptic density|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity|kainate selective glutamate receptor activity|PDZ domain binding			ovary(4)|skin(2)	6		Medulloblastoma(196;0.0391)|all_neural(177;0.16)|all_hematologic(541;0.21)	Kidney(363;0.000173)|KIRC - Kidney renal clear cell carcinoma(527;0.000785)		Desflurane(DB01189)|Enflurane(DB00228)|Halothane(DB01159)|Isoflurane(DB00753)|L-Glutamic Acid(DB00142)|Methoxyflurane(DB01028)|Sevoflurane(DB01236)	TTTTAGATTTGCTTTGTCGCA	0.433000													44	50					0	0	0.013114	0	0
KCNMB1	3779	broad.mit.edu	37	5	169812393	169812394	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:169812393_169812394CC>TT	uc003maq.1	-	2	458_459	c.58_59GG>AA	c.(58-60)GGT>AAT	p.G20N	KCNIP1_uc003map.2_Intron|KCNMB1_uc003mar.2_Missense_Mutation_p.G20N	NM_004137	NP_004128	Q16558	KCMB1_HUMAN	potassium large conductance calcium-activated	20	Helical; Name=1; (Potential).				platelet activation|synaptic transmission		calcium-activated potassium channel activity|potassium channel regulator activity			ovary(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0165)|all_lung(126;0.026)	Medulloblastoma(196;0.0109)|all_neural(177;0.0146)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)	all cancers(165;0.175)		CATGGTTACACCCAGGCAAAGG	0.559000													27	37					0	0	0.004672	0	0
KCNIP1	30820	broad.mit.edu	37	5	170159842	170159842	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:170159842G>A	uc003mas.2	+	7	1036	c.507G>A	c.(505-507)ATG>ATA	p.M169I	KCNIP1_uc003map.2_Missense_Mutation_p.M167I|KCNIP1_uc003mat.2_Missense_Mutation_p.M158I|KCNIP1_uc010jjp.2_Missense_Mutation_p.M130I|KCNIP1_uc010jjq.2_Missense_Mutation_p.M183I	NM_001034837	NP_001030009	Q9NZI2	KCIP1_HUMAN	Kv channel interacting protein 1 isoform 1	169					detection of calcium ion|signal transduction|synaptic transmission	plasma membrane	potassium channel activity|voltage-gated ion channel activity			skin(2)	2	Renal(175;0.000159)|Lung NSC(126;0.0191)|all_lung(126;0.0297)	Medulloblastoma(196;0.0109)|all_neural(177;0.0177)	Kidney(164;7.53e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)			ATGACATGATGGGGAAATACA	0.488000													54	78					0	0	0.014410	0	0
NSD1	64324	broad.mit.edu	37	5	176638258	176638258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr5:176638258C>T	uc003mfr.3	+	5	2996	c.2858C>T	c.(2857-2859)TCT>TTT	p.S953F	NSD1_uc003mft.3_Missense_Mutation_p.S684F|NSD1_uc003mfs.1_Missense_Mutation_p.S850F|NSD1_uc011dfx.1_Missense_Mutation_p.S601F	NM_022455	NP_071900	Q96L73	NSD1_HUMAN	nuclear receptor binding SET domain protein 1	953					negative regulation of transcription from RNA polymerase II promoter|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	chromosome|nucleus	androgen receptor binding|chromatin binding|estrogen receptor binding|histone methyltransferase activity (H3-K36 specific)|histone methyltransferase activity (H4-K20 specific)|ligand-dependent nuclear receptor binding|retinoid X receptor binding|thyroid hormone receptor binding|transcription corepressor activity|zinc ion binding			ovary(2)|kidney(1)	3	all_cancers(89;1.57e-05)|Renal(175;0.000269)|Lung NSC(126;0.00111)|all_lung(126;0.002)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)|Epithelial(233;0.198)	Kidney(146;0.235)		GTAGGAGTCTCTAAGGTTTTG	0.512000			T	NUP98	AML		Sotos Syndrome		Beckwith-Wiedemann_syndrome|Sotos_syndrome|Weaver_syndrome	HNSCC(47;0.14)			8	15					0	0	0.003080	0	0
HIVEP1	3096	broad.mit.edu	37	6	12130073	12130073	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:12130073G>C	uc003nac.2	+	5	6336	c.6157G>C	c.(6157-6159)GAA>CAA	p.E2053Q	HIVEP1_uc011diq.1_Intron	NM_002114	NP_002105	P15822	ZEP1_HUMAN	human immunodeficiency virus type I enhancer	2053					transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|protein binding|zinc ion binding			ovary(3)|large_intestine(1)|central_nervous_system(1)|skin(1)	6	Breast(50;0.0639)|Ovarian(93;0.0816)	all_hematologic(90;0.117)				GCAAGATAAAGAAAATTCCTT	0.303000													3	74					0	0	0.009096	0	0
MAS1L	116511	broad.mit.edu	37	6	29454930	29454930	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:29454930G>A	uc011dlq.1	-	1	750	c.750C>T	c.(748-750)TTC>TTT	p.F250F		NM_052967	NP_443199	P35410	MAS1L_HUMAN	MAS1 oncogene-like	250	Cytoplasmic (Potential).					cytoplasm|integral to membrane|nucleus|plasma membrane	G-protein coupled receptor activity			ovary(7)|lung(2)	9						AGCAGCACAGGAATCTAATGA	0.522000													19	8					0	0	0.003330	0	0
ZBTB22	9278	broad.mit.edu	37	6	33283159	33283159	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:33283159G>A	uc003oeb.2	-	2	1687	c.1535C>T	c.(1534-1536)CCG>CTG	p.P512L	TAPBP_uc003odx.1_5'Flank|TAPBP_uc010jus.1_5'Flank|TAPBP_uc003ody.2_5'Flank|TAPBP_uc003odz.2_5'Flank|TAPBP_uc010jut.1_5'Flank|TAPBP_uc011drc.1_5'Flank|ZBTB22_uc010juu.2_Missense_Mutation_p.P512L	NM_005453	NP_005444	O15209	ZBT22_HUMAN	zinc finger and BTB domain containing 22	512					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1						GCAGTCAAACGGCCGCAGATT	0.547000													69	15					0	0	0.014410	0	0
STK38	11329	broad.mit.edu	37	6	36492156	36492156	+	Nonsense_Mutation	SNP	C	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:36492156C>A	uc003omg.2	-	3	856	c.268G>T	c.(268-270)GAG>TAG	p.E90*	STK38_uc003omh.2_Nonsense_Mutation_p.E90*|STK38_uc003omi.2_Nonsense_Mutation_p.E90*	NM_007271	NP_009202	Q15208	STK38_HUMAN	serine/threonine kinase 38	90	Protein kinase.				intracellular protein kinase cascade|negative regulation of MAP kinase activity	cytoplasm|MLL5-L complex	ATP binding|magnesium ion binding|mitogen-activated protein kinase kinase kinase binding|protein serine/threonine kinase activity			ovary(3)|upper_aerodigestive_tract(1)|lung(1)|skin(1)	6						TTTAAGGACTCAAAATCTTCC	0.358000													54	17					2.01871e-26	2.09246e-26	0.014410	1	0
TBC1D22B	55633	broad.mit.edu	37	6	37250668	37250668	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:37250668G>A	uc003onn.2	+	5	758	c.612G>A	c.(610-612)AGG>AGA	p.R204R	TBC1D22B_uc010jwt.2_RNA	NM_017772	NP_060242	Q9NU19	TB22B_HUMAN	TBC1 domain family, member 22B	204						intracellular	Rab GTPase activator activity				0			OV - Ovarian serous cystadenocarcinoma(102;0.241)			ATGAACTGAGGAAGTGTAGCT	0.493000													25	6					0	0	0.004656	0	0
CRISP3	10321	broad.mit.edu	37	6	49696531	49696531	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:49696531T>C	uc003ozs.2	-	8	665	c.650A>G	c.(649-651)AAA>AGA	p.K217R		NM_006061	NP_006052	P54108	CRIS3_HUMAN	cysteine-rich secretory protein 3 precursor	217					innate immune response	proteinaceous extracellular matrix|specific granule				skin(2)	2	Lung NSC(77;0.0161)		KIRC - Kidney renal clear cell carcinoma(2;0.106)|Kidney(12;0.156)			CTTCAAACTTTTACAGTTACT	0.353000													37	11					0	0	0.006999	0	0
MIR206	406989	broad.mit.edu	37	6	52009186	52009186	+	RNA	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:52009186G>A	hsa-mir-206|MI0000490	+			c.40G>A			uc003paj.1_RNA																	0						TCCCCATATGGATTACTTTGC	0.532000													29	11					0	0	0.005524	0	0
PRDM13	59336	broad.mit.edu	37	6	100056719	100056719	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:100056719G>A	uc003pqg.1	+	2	508	c.247G>A	c.(247-249)GAA>AAA	p.E83K		NM_021620	NP_067633	Q9H4Q3	PRD13_HUMAN	PR domain containing 13	83	SET.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		all_cancers(76;1.64e-05)|Acute lymphoblastic leukemia(125;4.99e-11)|all_hematologic(75;5.82e-08)|all_epithelial(107;0.0128)|Colorectal(196;0.069)|Lung NSC(302;0.186)		BRCA - Breast invasive adenocarcinoma(108;0.0598)		ACAGACTCTGGAAGCTATTGC	0.617000													17	34					0	0	0.008871	0	0
MAN1A1	4121	broad.mit.edu	37	6	119669680	119669680	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:119669680C>T	uc003pym.1	-	2	993	c.551G>A	c.(550-552)AGC>AAC	p.S184N	MAN1A1_uc010kei.1_Missense_Mutation_p.S184N	NM_005907	NP_005898	P33908	MA1A1_HUMAN	mannosidase, alpha, class 1A, member 1	184	Lumenal (Potential).				post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum|ER-Golgi intermediate compartment|Golgi membrane|integral to membrane|membrane fraction	calcium ion binding|mannosyl-oligosaccharide 1,2-alpha-mannosidase activity			ovary(2)|central_nervous_system(1)|skin(1)	4		all_epithelial(87;0.173)		OV - Ovarian serous cystadenocarcinoma(136;0.0612)|GBM - Glioblastoma multiforme(226;0.0702)|all cancers(137;0.115)		GGGCTCCCGGCTCTCCACCCC	0.652000													21	20					0	0	0.002780	0	0
TAAR6	319100	broad.mit.edu	37	6	132891708	132891708	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:132891708T>G	uc011eck.1	+	1	248	c.248T>G	c.(247-249)GTG>GGG	p.V83G		NM_175067	NP_778237	Q96RI8	TAAR6_HUMAN	trace amine associated receptor 6	83	Helical; Name=2; (Potential).					plasma membrane	G-protein coupled receptor activity			ovary(2)|skin(1)	3	Breast(56;0.112)			OV - Ovarian serous cystadenocarcinoma(155;0.006)|GBM - Glioblastoma multiforme(226;0.00792)		TTGGTGGGTGTGACTGTGATG	0.502000													31	67					0	0	0.003755	0	0
SLC22A2	6582	broad.mit.edu	37	6	160666540	160666540	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:160666540T>C	uc003qtf.2	-	6	1165	c.995A>G	c.(994-996)AAC>AGC	p.N332S	SLC22A2_uc003qte.1_Missense_Mutation_p.N332S	NM_003058	NP_003049	O15244	S22A2_HUMAN	solute carrier family 22 member 2	332	Cytoplasmic (Potential).				body fluid secretion|neurotransmitter biosynthetic process|neurotransmitter secretion	integral to plasma membrane|membrane fraction	neurotransmitter transporter activity|organic cation transmembrane transporter activity			breast(1)|skin(1)	2		Breast(66;0.000776)|Ovarian(120;0.0303)		OV - Ovarian serous cystadenocarcinoma(65;2.28e-17)|BRCA - Breast invasive adenocarcinoma(81;6.29e-06)		AAATGAAGGGTTCAATTTCTT	0.388000													18	17					0	0	0.008871	0	0
LPA	4018	broad.mit.edu	37	6	161027667	161027667	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr6:161027667C>T	uc003qtl.2	-	18	2747	c.2627G>A	c.(2626-2628)AGG>AAG	p.R876K		NM_005577	NP_005568	P08519	APOA_HUMAN	lipoprotein Lp(a) precursor	3384	Kringle 30.				blood circulation|lipid metabolic process|lipid transport|lipoprotein metabolic process|proteolysis|receptor-mediated endocytosis	plasma lipoprotein particle	apolipoprotein binding|endopeptidase inhibitor activity|fibronectin binding|heparin binding|serine-type endopeptidase activity			ovary(3)|skin(2)|pancreas(1)	6		Breast(66;0.000496)|Ovarian(120;0.0303)|Prostate(117;0.0965)		OV - Ovarian serous cystadenocarcinoma(65;2.5e-17)|BRCA - Breast invasive adenocarcinoma(81;6.48e-06)	Aminocaproic Acid(DB00513)	ATCTGGATTCCTGCAGTAGTT	0.517000													101	113					0	0	0.014410	0	0
INTS1	26173	broad.mit.edu	37	7	1526974	1526974	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:1526974G>A	uc003skn.2	-	20	2729	c.2628C>T	c.(2626-2628)CTC>CTT	p.L876L	INTS1_uc003skp.1_Silent_p.L223L	NM_001080453	NP_001073922	Q8N201	INT1_HUMAN	integrator complex subunit 1	876					snRNA processing	integral to membrane|integrator complex|nuclear membrane					0		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0181)|OV - Ovarian serous cystadenocarcinoma(56;6.99e-15)		GGATGATGTGGAGGAGAAAGT	0.627000													9	12					0	0	0.008291	0	0
PAPOLB	56903	broad.mit.edu	37	7	4899941	4899941	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:4899941G>A	uc003snk.2	-	1	1685	c.1501C>T	c.(1501-1503)CAT>TAT	p.H501Y	RADIL_uc003sng.1_Intron|RADIL_uc011jwd.1_Intron|RADIL_uc003snj.1_Intron	NM_020144	NP_064529	Q9NRJ5	PAPOB_HUMAN	poly(A) polymerase beta (testis specific)	500					mRNA processing|RNA polyadenylation|transcription, DNA-dependent	nucleus	ATP binding|metal ion binding|polynucleotide adenylyltransferase activity|RNA binding			ovary(1)	1		Ovarian(82;0.0175)		UCEC - Uterine corpus endometrioid carcinoma (126;0.089)|OV - Ovarian serous cystadenocarcinoma(56;2.06e-14)		TGAAGCACATGATGAGGCAGC	0.413000													14	51					0	0	0.004990	0	0
ACTB	60	broad.mit.edu	37	7	5568831	5568832	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:5568831_5568832GG>AA	uc003sos.3	-	2	359_360	c.323_324CC>TT	c.(322-324)GCC>GTT	p.A108V	ACTB_uc003sor.3_5'UTR|ACTB_uc003sot.3_Missense_Mutation_p.A108V|ACTB_uc003soq.3_5'UTR|ACTB_uc010ksy.2_Intron	NM_001101	NP_001092	P60709	ACTB_HUMAN	beta actin	108					'de novo' posttranslational protein folding|adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol|MLL5-L complex|NuA4 histone acetyltransferase complex|ribonucleoprotein complex	ATP binding|kinesin binding|nitric-oxide synthase binding|structural constituent of cytoskeleton				0		Ovarian(82;0.0606)		UCEC - Uterine corpus endometrioid carcinoma (126;0.175)|OV - Ovarian serous cystadenocarcinoma(56;4.24e-37)		GGTTCAGGGGGGCCTCGGTCAG	0.639000													57	43					0	0	0.004672	0	0
COL28A1	340267	broad.mit.edu	37	7	7420476	7420476	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:7420476C>T	uc003src.1	-	29	2340	c.2223G>A	c.(2221-2223)CGG>CGA	p.R741R	COL28A1_uc011jxe.1_Silent_p.R424R	NM_001037763	NP_001032852	Q2UY09	COSA1_HUMAN	collagen, type XXVIII precursor	741	Collagen-like 6.				cell adhesion	basement membrane|collagen	serine-type endopeptidase inhibitor activity			skin(3)	3		Ovarian(82;0.0789)		UCEC - Uterine corpus endometrioid carcinoma (126;0.228)		CCACATCGCCCCGTTCTCCGT	0.398000													38	133					0	0	0.010771	0	0
DGKB	1607	broad.mit.edu	37	7	14775813	14775813	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:14775813C>T	uc003ssz.2	-	4	362	c.175G>A	c.(175-177)GAT>AAT	p.D59N	DGKB_uc011jxt.1_Missense_Mutation_p.D52N|DGKB_uc003sta.2_Missense_Mutation_p.D59N|DGKB_uc011jxu.1_Missense_Mutation_p.D59N|DGKB_uc011jxv.1_Missense_Mutation_p.D59N	NM_004080	NP_004071	Q9Y6T7	DGKB_HUMAN	diacylglycerol kinase, beta isoform 1	59					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	cytoplasm|plasma membrane	ATP binding|calcium ion binding|diacylglycerol kinase activity|protein binding			lung(5)|ovary(4)|breast(2)|skin(1)	12					Phosphatidylserine(DB00144)	CCTTCAAAATCTATTGTCTGG	0.338000													4	17					0	0	0.009096	0	0
NPSR1	387129	broad.mit.edu	37	7	34724228	34724229	+	Missense_Mutation	DNP	TT	CA	CA			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:34724228_34724229TT>CA	uc003teg.1	+	2	340_341	c.212_213TT>CA	c.(211-213)CTT>CCA	p.L71P	AAA1_uc010kwo.1_Intron|AAA1_uc010kwp.1_Intron|AAA1_uc003tdz.2_Intron|AAA1_uc010kwq.1_Intron|AAA1_uc003teb.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Missense_Mutation_p.L71P|NPSR1_uc010kwt.1_5'UTR|NPSR1_uc010kwu.1_5'UTR|NPSR1_uc010kwv.1_Missense_Mutation_p.L71P|NPSR1_uc003tei.1_Missense_Mutation_p.L71P|NPSR1_uc010kww.1_Missense_Mutation_p.L71P|NPSR1_uc011kar.1_Missense_Mutation_p.L71P	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	71	Helical; Name=1; (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	TCCGTTGTGCTTTTTTCCACAT	0.421000													52	92					0	0	0.004672	0	0
DPY19L1	23333	broad.mit.edu	37	7	35051041	35051041	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:35051041G>A	uc003tem.3	-	5	497	c.352C>T	c.(352-354)CGG>TGG	p.R118W		NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	118						integral to membrane					0						GTATAAATCCGGTACCAACTG	0.338000													3	62					0	0	0.000602	0	0
DPY19L1	23333	broad.mit.edu	37	7	35051048	35051048	+	Silent	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:35051048A>G	uc003tem.3	-	5	490	c.345T>C	c.(343-345)AGT>AGC	p.S115S		NM_015283	NP_056098	Q2PZI1	D19L1_HUMAN	dpy-19-like 1	115						integral to membrane					0						TCCGGTACCAACTGGCCAAAA	0.323000													3	52					0	0	0.000602	0	0
GLI3	2737	broad.mit.edu	37	7	42005600	42005600	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:42005600A>C	uc011kbh.1	-	15	3162	c.3071T>G	c.(3070-3072)TTC>TGC	p.F1024C	GLI3_uc011kbg.1_Missense_Mutation_p.F965C	NM_000168	NP_000159	P10071	GLI3_HUMAN	GLI-Kruppel family member GLI3	1024					negative regulation of alpha-beta T cell differentiation|negative regulation of canonical Wnt receptor signaling pathway|negative regulation of smoothened signaling pathway|negative regulation of transcription from RNA polymerase II promoter|negative thymic T cell selection|positive regulation of alpha-beta T cell differentiation|positive regulation of transcription from RNA polymerase II promoter|thymocyte apoptosis	cilium|cytosol|nucleolus	beta-catenin binding|histone acetyltransferase binding|histone deacetylase binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			lung(11)|ovary(3)|large_intestine(2)|central_nervous_system(1)|kidney(1)|pancreas(1)	19						GAGGCTGCTGAAGCGCGGCAC	0.726000									Greig_Cephalopolysyndactyly|Pallister-Hall_syndrome				14	24					0	0	0.003163	0	0
GCK	2645	broad.mit.edu	37	7	44228528	44228528	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:44228528C>T	uc003tkl.2	-	1	495	c.25G>A	c.(25-27)GAG>AAG	p.E9K		NM_000162	NP_000153	P35557	HXK4_HUMAN	glucokinase isoform 1	9					cellular response to insulin stimulus|cellular response to leptin stimulus|detection of glucose|endocrine pancreas development|glucose homeostasis|glucose transport|glycolysis|negative regulation of gluconeogenesis|positive regulation of glycogen biosynthetic process|positive regulation of insulin secretion|regulation of glucose transport|regulation of glycolysis|transmembrane transport	cytosol|nucleoplasm	ATP binding|glucokinase activity|glucose binding|protein binding			skin(3)|lung(1)	4						TTGGCGGCCTCCATCCTGGCT	0.567000													25	55					0	0	0.009535	0	0
OGDH	4967	broad.mit.edu	37	7	44736600	44736600	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:44736600C>T	uc003tln.2	+	15	2097	c.1988C>T	c.(1987-1989)TCG>TTG	p.S663L	OGDH_uc011kbx.1_Missense_Mutation_p.S659L|OGDH_uc011kby.1_Missense_Mutation_p.S513L|OGDH_uc003tlp.2_Missense_Mutation_p.S674L|OGDH_uc011kbz.1_Missense_Mutation_p.S458L|OGDH_uc003tlo.1_Missense_Mutation_p.S496L	NM_002541	NP_002532	Q02218	ODO1_HUMAN	oxoglutarate dehydrogenase isoform 1 precursor	663					glycolysis|lysine catabolic process|tricarboxylic acid cycle	mitochondrial matrix|mitochondrial membrane	oxoglutarate dehydrogenase (succinyl-transferring) activity|thiamine pyrophosphate binding			upper_aerodigestive_tract(1)|ovary(1)	2					NADH(DB00157)	GCGTTTGGCTCGCTCCTGAAG	0.582000													49	60					0	0	0.014410	0	0
MYO1G	64005	broad.mit.edu	37	7	45014787	45014787	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:45014787G>A	uc003tmh.2	-	5	748	c.604C>T	c.(604-606)CAC>TAC	p.H202Y	MYO1G_uc003tmg.2_5'UTR|MYO1G_uc010kym.2_Missense_Mutation_p.H87Y|MYO1G_uc003tmi.1_Missense_Mutation_p.H114Y|MYO1G_uc003tmj.2_5'UTR	NM_033054	NP_149043	B0I1T2	MYO1G_HUMAN	myosin IG	202	Myosin head-like.					myosin complex|plasma membrane	actin binding|ATP binding|calmodulin binding|motor activity			breast(2)|ovary(1)|pancreas(1)	4						TAGAAGGCGTGGAAGTTTCTT	0.592000													128	355					0	0	0.014410	0	0
ABCA13	154664	broad.mit.edu	37	7	48313343	48313343	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:48313343T>A	uc003toq.2	+	17	4105	c.4080T>A	c.(4078-4080)GAT>GAA	p.D1360E	ABCA13_uc010kyr.2_Missense_Mutation_p.D863E	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1360					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						TTTTAGAAGATGGCTTTTTAT	0.328000													8	12					0	0	0.006214	0	0
SEPT14	346288	broad.mit.edu	37	7	55863756	55863756	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:55863756C>A	uc003tqz.2	-	10	1266	c.1149G>T	c.(1147-1149)ATG>ATT	p.M383I		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	383	Potential.				cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			CCTGTTGAATCATTTTAAGAT	0.413000													20	10					8.34094e-07	8.50963e-07	0.008871	1	0
ZNF479	90827	broad.mit.edu	37	7	57187809	57187809	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:57187809T>G	uc010kzo.2	-	5	1584	c.1313A>C	c.(1312-1314)AAA>ACA	p.K438T		NM_033273	NP_150376	Q96JC4	ZN479_HUMAN	zinc finger protein 479	438	C2H2-type 10.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(3)|skin(1)	4			GBM - Glioblastoma multiforme(1;9.18e-12)			TTCTTCACATTTGTAGGGTCT	0.453000													3	137					0	0	0.009096	0	0
ZNF679	168417	broad.mit.edu	37	7	63727144	63727144	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:63727144A>T	uc003tsx.2	+	5	1402	c.1133A>T	c.(1132-1134)GAA>GTA	p.E378V		NM_153363	NP_699194	Q8IYX0	ZN679_HUMAN	zinc finger protein 679	378					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(1)	1						ACTGGAGAGGAACCCTACAAA	0.388000													18	25					0	0	0.008871	0	0
WBSCR17	64409	broad.mit.edu	37	7	71142214	71142214	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:71142214A>G	uc003tvy.2	+	9	1423	c.1423A>G	c.(1423-1425)AAA>GAA	p.K475E	WBSCR17_uc003tvz.2_Missense_Mutation_p.K174E	NM_022479	NP_071924	Q6IS24	GLTL3_HUMAN	UDP-GalNAc:polypeptide	475	Ricin B-type lectin.|Lumenal (Potential).					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding			skin(3)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)|central_nervous_system(1)	7		all_cancers(73;0.2)|Lung NSC(55;0.094)|all_lung(88;0.125)				CAACAAGGCAAAAGACGTCTG	0.547000													122	395					0	0	0.014410	0	0
NCF1C	654817	broad.mit.edu	37	7	74578708	74578708	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:74578708C>T	uc003ubv.2	-	6	578	c.496G>A	c.(496-498)GAG>AAG	p.E166K	NCF1C_uc011kfn.1_Missense_Mutation_p.E166K|NCF1C_uc011kfo.1_Missense_Mutation_p.E164K	NR_003187				RecName: Full=Putative neutrophil cytosol factor 1C;          Short=NCF-1C; AltName: Full=Putative SH3 and PX domain-containing protein 1C;												0						TGACCGCTCTCGCTCTTCTCC	0.662000													10	20					0	0	0.002450	0	0
GRM3	2913	broad.mit.edu	37	7	86416220	86416220	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:86416220G>A	uc003uid.2	+	3	2211	c.1112G>A	c.(1111-1113)CGC>CAC	p.R371H	GRM3_uc010lef.2_Missense_Mutation_p.R369H|GRM3_uc010leg.2_Missense_Mutation_p.R243H|GRM3_uc010leh.2_Intron	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	371	Extracellular (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	AACCACAGGCGCGTCTGCGAC	0.567000													57	53					0	0	0.014410	0	0
ABCB4	5244	broad.mit.edu	37	7	87037492	87037492	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:87037492G>A	uc003uiv.1	-	25	3216	c.3140C>T	c.(3139-3141)GCA>GTA	p.A1047V	ABCB4_uc003uiw.1_Missense_Mutation_p.A1047V|ABCB4_uc003uix.1_Missense_Mutation_p.A1000V	NM_018849	NP_061337	P21439	MDR3_HUMAN	ATP-binding cassette, subfamily B, member 4	1047	ABC transporter 2.|Cytoplasmic (By similarity).				cellular lipid metabolic process	apical plasma membrane|Golgi membrane|integral to plasma membrane|intercellular canaliculus|membrane fraction	ATP binding|xenobiotic-transporting ATPase activity			ovary(4)|skin(1)|pancreas(1)	6	Esophageal squamous(14;0.0058)|all_lung(186;0.201)|Lung NSC(181;0.203)					TGGCACGTTTGCTCGGGTGGG	0.468000													66	72					0	0	0.014410	0	0
SAMD9	54809	broad.mit.edu	37	7	92732556	92732556	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:92732556C>G	uc003umf.2	-	3	3111	c.2855G>C	c.(2854-2856)GGG>GCG	p.G952A	SAMD9_uc003umg.2_Missense_Mutation_p.G952A	NM_017654	NP_060124	Q5K651	SAMD9_HUMAN	sterile alpha motif domain containing 9	952						cytoplasm				ovary(3)|skin(2)|breast(1)|central_nervous_system(1)	7	all_cancers(62;5.71e-11)|all_epithelial(64;3.25e-10)|Breast(17;0.000675)|Lung NSC(181;0.0969)|all_lung(186;0.125)		STAD - Stomach adenocarcinoma(171;0.000302)			TTTTTCTGTCCCCCAGAAAGC	0.398000													28	46					0	0	0.008361	0	0
SLC12A9	56996	broad.mit.edu	37	7	100454518	100454518	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:100454518C>T	uc003uwp.2	+	5	619	c.477C>T	c.(475-477)GTC>GTT	p.V159V	SLC12A9_uc003uwo.1_Silent_p.V70V|SLC12A9_uc003uwq.2_Silent_p.V70V|SLC12A9_uc011kki.1_Intron|SLC12A9_uc003uwr.2_5'UTR|SLC12A9_uc003uws.2_5'UTR|SLC12A9_uc003uwt.2_5'UTR|SLC12A9_uc003uwv.2_5'Flank	NM_020246	NP_064631	Q9BXP2	S12A9_HUMAN	solute carrier family 12 (potassium/chloride	159	Extracellular (Potential).					integral to membrane|plasma membrane	cation:chloride symporter activity				0	Lung NSC(181;0.041)|all_lung(186;0.0581)					GGCTCCGGGTCCTGCCCCAGG	0.607000													60	70					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100677071	100677071	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:100677071G>A	uc003uxp.1	+	3	2427	c.2374G>A	c.(2374-2376)GAA>AAA	p.E792K	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	792	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|11.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TACAACCACTGAAGGTACCAG	0.483000													177	656					0	0	0.014410	0	0
MUC17	140453	broad.mit.edu	37	7	100685088	100685088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:100685088C>T	uc003uxp.1	+	3	10444	c.10391C>T	c.(10390-10392)CCT>CTT	p.P3464L	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	3464	Extracellular (Potential).|Ser-rich.|56.|59 X approximate tandem repeats.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					TCAATTATGCCTCTCAGTACC	0.493000													175	658					0	0	0.014410	0	0
AP1S1	1174	broad.mit.edu	37	7	100799942	100799942	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:100799942C>T	uc003uxv.3	+	2	181	c.71C>T	c.(70-72)TCG>TTG	p.S24L		NM_001283	NP_001274	P61966	AP1S1_HUMAN	adaptor-related protein complex 1, sigma 1	24					intracellular protein transport|post-Golgi vesicle-mediated transport|receptor-mediated endocytosis|regulation of defense response to virus by virus|response to virus|viral reproduction	AP-1 adaptor complex|coated pit|cytosol|lysosomal membrane	protein binding|protein transporter activity				0	Lung NSC(181;0.168)|all_lung(186;0.215)					CTGGCCACTTCGGACAAGGAA	0.557000													22	27					0	0	0.002780	0	0
FOXP2	93986	broad.mit.edu	37	7	114302201	114302201	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:114302201G>A	uc003vhb.2	+	14	2103	c.1729G>A	c.(1729-1731)GAA>AAA	p.E577K	FOXP2_uc003vgu.2_RNA|FOXP2_uc003vgz.2_Missense_Mutation_p.E602K|FOXP2_uc003vha.2_Missense_Mutation_p.E485K|FOXP2_uc011kmu.1_Missense_Mutation_p.E594K|FOXP2_uc011kmv.1_Missense_Mutation_p.E576K|FOXP2_uc010ljz.1_Missense_Mutation_p.E392K|FOXP2_uc003vhe.1_Missense_Mutation_p.E147K	NM_014491	NP_055306	O15409	FOXP2_HUMAN	forkhead box P2 isoform I	577	Fork-head.				camera-type eye development|caudate nucleus development|cerebellum development|cerebral cortex development|embryo development|growth|lung alveolus development|negative regulation of transcription, DNA-dependent|pattern specification process|positive regulation of epithelial cell proliferation involved in lung morphogenesis|positive regulation of mesenchymal cell proliferation|post-embryonic development|putamen development|regulation of sequence-specific DNA binding transcription factor activity|righting reflex|skeletal muscle tissue development|smooth muscle tissue development|vocal learning	cytoplasm|transcription factor complex	chromatin binding|DNA bending activity|double-stranded DNA binding|promoter binding|protein heterodimerization activity|protein homodimerization activity|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|specific RNA polymerase II transcription factor activity|specific transcriptional repressor activity|transcription activator activity|transcription factor binding|zinc ion binding			ovary(4)|pancreas(1)|lung(1)|breast(1)|skin(1)	8						GACTGTGGATGAAGTAGAATA	0.388000													25	70					0	0	0.007291	0	0
C7orf58	79974	broad.mit.edu	37	7	120767143	120767143	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:120767143G>A	uc003vjq.3	+	10	1582	c.1135_splice	c.e10-1	p.V379_splice	C7orf58_uc003vjr.1_Splice_Site_p.V379_splice|C7orf58_uc003vjs.3_Splice_Site_p.V379_splice|C7orf58_uc003vjt.3_Splice_Site_p.V159_splice|C7orf58_uc010lkk.1_Splice_Site_p.V159_splice	NM_024913	NP_079189	A4D0V7	CG058_HUMAN	hypothetical protein LOC79974 isoform 1							endoplasmic reticulum				ovary(4)|large_intestine(2)|skin(2)|pancreas(1)	9	all_neural(327;0.117)					TTCTTTCAAAGGTACACGAGC	0.284000													11	72					0	0	0.001855	0	0
GPR37	2861	broad.mit.edu	37	7	124404546	124404546	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:124404546G>A	uc003vli.2	-	1	1136	c.485C>T	c.(484-486)TCC>TTC	p.S162F		NM_005302	NP_005293	O15354	GPR37_HUMAN	G protein-coupled receptor 37 precursor	162	Extracellular (Potential).					endoplasmic reticulum membrane|integral to plasma membrane	G-protein coupled receptor activity			ovary(1)|lung(1)|central_nervous_system(1)	3						GCTACGCCCGGAAATGCCAGC	0.592000													106	139					0	0	0.014410	0	0
MEST	4232	broad.mit.edu	37	7	130137800	130137800	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:130137800G>A	uc003vqg.2	+	4	502	c.285G>A	c.(283-285)AGG>AGA	p.R95R	MEST_uc003vqc.2_Silent_p.R86R|MEST_uc003vqd.2_Silent_p.R86R|MEST_uc003vqf.2_Silent_p.R86R|MEST_uc011kph.1_Silent_p.R81R|MEST_uc010lmg.2_Silent_p.R95R	NM_002402	NP_002393	Q5EB52	MEST_HUMAN	mesoderm specific transcript isoform a	95					mesoderm development	endoplasmic reticulum membrane|integral to membrane	hydrolase activity|protein binding			ovary(2)	2	Melanoma(18;0.0435)					TGACCTTGAGGTTTCATCGGG	0.522000													89	322					0	0	0.014410	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				51	84					0	0	0.014410	0	0
KIAA1147	57189	broad.mit.edu	37	7	141365102	141365102	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:141365102G>A	uc003vwk.2	-	6	837	c.837C>T	c.(835-837)TGC>TGT	p.C279C		NM_001080392	NP_001073861	A4D1U4	LCHN_HUMAN	hypothetical protein LOC57189	279	Poly-Cys.									ovary(1)	1	Melanoma(164;0.0171)					CGTTGGCCAAGCAGCAGCAGC	0.612000													27	47					0	0	0.004289	0	0
OR9A4	130075	broad.mit.edu	37	7	141619135	141619135	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:141619135C>T	uc003vwu.1	+	1	460	c.460C>T	c.(460-462)CTT>TTT	p.L154F		NM_001001656	NP_001001656	Q8NGU2	OR9A4_HUMAN	olfactory receptor, family 9, subfamily A,	154	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	Melanoma(164;0.0171)					GTTTGGGTTTCTTTTTCAAAT	0.423000													131	138					0	0	0.014410	0	0
MGAM	8972	broad.mit.edu	37	7	141762403	141762403	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:141762403C>T	uc003vwy.2	+	35	4212	c.4158C>T	c.(4156-4158)TTC>TTT	p.F1386F		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1386	Glucoamylase.|Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	CAGACTTTTTCCGTAATTCAA	0.393000													15	14					0	0	0.008361	0	0
MGAM	8972	broad.mit.edu	37	7	141805657	141805657	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:141805657A>C	uc003vwy.2	+	48	5594	c.5540A>C	c.(5539-5541)AAT>ACT	p.N1847T		NM_004668	NP_004659	O43451	MGA_HUMAN	maltase-glucoamylase	1847	Lumenal (Potential).				polysaccharide digestion|starch catabolic process	apical plasma membrane|integral to membrane	carbohydrate binding|glucan 1,4-alpha-glucosidase activity|maltose alpha-glucosidase activity			ovary(2)	2	Melanoma(164;0.0272)				Acarbose(DB00284)|Miglitol(DB00491)|Voglibose(DB04878)	AGCCTACATAATTTTACTTCA	0.358000													106	106					0	0	0.014410	0	0
OR2A12	346525	broad.mit.edu	37	7	143792327	143792327	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:143792327A>T	uc011kty.1	+	1	127	c.127A>T	c.(127-129)ATT>TTT	p.I43F		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	43	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					GGGAAATGGGATTATCCTGGG	0.493000													101	146					0	0	0.014410	0	0
CNTNAP2	26047	broad.mit.edu	37	7	146829338	146829338	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:146829338G>A	uc003weu.1	+	8	1601	c.1085G>A	c.(1084-1086)GGA>GAA	p.G362E		NM_014141	NP_054860	Q9UHC6	CNTP2_HUMAN	cell recognition molecule Caspr2 precursor	362	Laminin G-like 1.|Extracellular (Potential).				behavior|cell adhesion|clustering of voltage-gated potassium channels|limbic system development|neuron recognition|signal transduction|striatum development|superior temporal gyrus development|thalamus development|transmission of nerve impulse	axolemma|cell body fiber|dendrite|juxtaparanode region of axon|voltage-gated potassium channel complex	receptor binding			ovary(9)|central_nervous_system(1)|pancreas(1)	11	Melanoma(164;0.153)	all_cancers(3;3.51e-10)|all_epithelial(3;1.4e-05)|Myeloproliferative disorder(3;0.00452)|Lung NSC(3;0.0067)|all_lung(3;0.00794)	OV - Ovarian serous cystadenocarcinoma(82;0.0319)			ATTTTACAGGGAAATTTGAGC	0.433000										HNSCC(39;0.1)			39	66					0	0	0.013114	0	0
ZNF282	8427	broad.mit.edu	37	7	148907714	148907714	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:148907714C>T	uc003wfm.2	+	5	975	c.870C>T	c.(868-870)TCC>TCT	p.S290S	ZNF282_uc011kun.1_Silent_p.S290S|ZNF282_uc003wfn.2_Silent_p.S230S|ZNF282_uc003wfo.2_Intron	NM_003575	NP_003566	Q9UDV7	ZN282_HUMAN	zinc finger protein 282	290					negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	Melanoma(164;0.15)		OV - Ovarian serous cystadenocarcinoma(82;0.00171)	Lung(243;0.145)		ATGCGTCCTCCCAGGTGAAGC	0.602000													10	28					0	0	0.001855	0	0
ZNF746	155061	broad.mit.edu	37	7	149191587	149191588	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:149191587_149191588GG>AA	uc003wfw.2	-	2	302_303	c.31_32CC>TT	c.(31-33)CCG>TTG	p.P11L	ZNF746_uc010lpi.2_Missense_Mutation_p.P11L	NM_152557	NP_689770	Q6NUN9	ZN746_HUMAN	zinc finger protein 746 isoform 2	11					negative regulation of transcription, DNA-dependent|neuron death|regulation of cell death|transcription, DNA-dependent	cytoplasm|nucleus	transcription regulatory region DNA binding|ubiquitin protein ligase binding|zinc ion binding			ovary(2)|breast(1)	3	Melanoma(164;0.165)		OV - Ovarian serous cystadenocarcinoma(82;0.00358)			CATCGTCCACGGAGAAATCTTT	0.550000													51	76					0	0	0.004672	0	0
ABP1	26	broad.mit.edu	37	7	150553699	150553699	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:150553699C>T	uc003why.1	+	3	4359	c.141C>T	c.(139-141)TTC>TTT	p.F47F	ABP1_uc003whz.1_Silent_p.F47F|ABP1_uc003wia.1_Silent_p.F47F	NM_001091	NP_001082	P19801	ABP1_HUMAN	amiloride binding protein 1 precursor	47					amine metabolic process	extracellular space|peroxisome	copper ion binding|diamine oxidase activity|heparin binding|histamine oxidase activity|methylputrescine oxidase activity|primary amine oxidase activity|propane-1,3-diamine oxidase activity|quinone binding			ovary(2)|breast(2)|skin(2)	6	all_neural(206;0.219)		OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)	Amiloride(DB00594)|Spermine(DB00127)	TGCACAGCTTCCTCTGGTCCA	0.597000													33	123					0	0	0.004289	0	0
CSMD1	64478	broad.mit.edu	37	8	3263716	3263716	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:3263716G>A	uc011kwk.1	-	15	2492	c.2102C>T	c.(2101-2103)CCT>CTT	p.P701L	CSMD1_uc011kwj.1_Missense_Mutation_p.P93L	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	701	Sushi 4.|Extracellular (Potential).					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGAATGCCAGGATCATGGCA	0.388000													4	8					0	0	0.000602	0	0
DLC1	10395	broad.mit.edu	37	8	13357560	13357560	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:13357560C>T	uc003wwm.2	-	2	465	c.21G>A	c.(19-21)AAG>AAA	p.K7K	DLC1_uc003wwn.2_Silent_p.K7K|DLC1_uc011kxy.1_Silent_p.K7K	NM_182643	NP_872584	Q96QB1	RHG07_HUMAN	deleted in liver cancer 1 isoform 1	7					actin cytoskeleton organization|activation of caspase activity|focal adhesion assembly|forebrain development|heart morphogenesis|hindbrain morphogenesis|induction of apoptosis|negative regulation of cell migration|negative regulation of cell proliferation|negative regulation of Rho protein signal transduction|negative regulation of stress fiber assembly|neural tube closure|positive regulation of protein dephosphorylation|regulation of cell shape|small GTPase mediated signal transduction	caveola|cytosol|focal adhesion|nucleus	Rho GTPase activator activity|SH2 domain binding			ovary(3)|pancreas(2)|lung(1)|kidney(1)	7						CCCAGCTTCTCTTTCTGATAG	0.413000													35	57					0	0	0.007835	0	0
PXDNL	137902	broad.mit.edu	37	8	52323832	52323832	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:52323832G>A	uc003xqu.3	-	16	2141	c.2040C>T	c.(2038-2040)CTC>CTT	p.L680L	PXDNL_uc003xqt.3_5'Flank	NM_144651	NP_653252	A1KZ92	PXDNL_HUMAN	peroxidasin homolog-like precursor	680					hydrogen peroxide catabolic process	extracellular space	heme binding|peroxidase activity			ovary(1)|pancreas(1)	2		all_cancers(86;0.107)|Lung NSC(129;0.00641)|all_epithelial(80;0.00716)|all_lung(136;0.015)				AGTCCACAGTGAGCCCCTGCT	0.512000													15	7					0	0	0.004007	0	0
ST18	9705	broad.mit.edu	37	8	53025816	53025816	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:53025816G>A	uc003xqz.2	-	21	3242	c.3086C>T	c.(3085-3087)CCG>CTG	p.P1029L	ST18_uc011ldq.1_Missense_Mutation_p.P676L|ST18_uc011ldr.1_Missense_Mutation_p.P994L|ST18_uc011lds.1_Missense_Mutation_p.P934L|ST18_uc003xra.2_Missense_Mutation_p.P1029L	NM_014682	NP_055497	O60284	ST18_HUMAN	suppression of tumorigenicity 18	1029						nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(4)|skin(1)	5		Lung NSC(129;0.131)|all_epithelial(80;0.217)|all_lung(136;0.229)				TTTGCATTCCGGGGAATAGTC	0.448000													98	75					0	0	0.014410	0	0
C8orf34	116328	broad.mit.edu	37	8	69434034	69434034	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:69434034G>A	uc010lyz.2	+	6	557	c.508G>A	c.(508-510)GAA>AAA	p.E170K	C8orf34_uc010lyy.1_Missense_Mutation_p.E170K|C8orf34_uc003xyb.2_Missense_Mutation_p.E145K	NM_052958	NP_443190	Q49A92	CH034_HUMAN	hypothetical protein LOC116328	170					signal transduction		cAMP-dependent protein kinase regulator activity			large_intestine(1)	1			Epithelial(68;0.0117)|OV - Ovarian serous cystadenocarcinoma(28;0.0227)|all cancers(69;0.0502)			TTCTCTTCAGGAAACAGTGAC	0.388000													22	74					0	0	0.004656	0	0
SULF1	23213	broad.mit.edu	37	8	70488373	70488373	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:70488373C>T	uc010lza.1	+	6	1058	c.341C>T	c.(340-342)TCC>TTC	p.S114F	SULF1_uc003xyd.2_Missense_Mutation_p.S114F|SULF1_uc003xye.2_Missense_Mutation_p.S114F|SULF1_uc003xyf.2_Missense_Mutation_p.S114F|SULF1_uc003xyg.2_Missense_Mutation_p.S114F	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	114					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			AACTGCTCTTCCCCCTCGTGG	0.512000													30	98					0	0	0.010818	0	0
SULF1	23213	broad.mit.edu	37	8	70550817	70550817	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:70550817C>T	uc010lza.1	+	20	3082	c.2365C>T	c.(2365-2367)CTT>TTT	p.L789F	SULF1_uc003xyd.2_Missense_Mutation_p.L789F|SULF1_uc003xye.2_Missense_Mutation_p.L789F|SULF1_uc003xyf.2_Missense_Mutation_p.L789F|SULF1_uc003xyg.2_Missense_Mutation_p.L789F|SULF1_uc003xyh.1_RNA|SULF1_uc003xyi.1_Intron|SULF1_uc003xyj.1_5'UTR	NM_015170	NP_055985	Q8IWU6	SULF1_HUMAN	sulfatase 1 precursor	789					apoptosis|bone development|heparan sulfate proteoglycan metabolic process|kidney development|negative regulation of fibroblast growth factor receptor signaling pathway	cell surface|endoplasmic reticulum|extracellular space|Golgi stack	arylsulfatase activity|calcium ion binding			central_nervous_system(3)|ovary(2)|pancreas(1)|skin(1)	7	Breast(64;0.0654)		Epithelial(68;0.0124)|OV - Ovarian serous cystadenocarcinoma(28;0.0265)|all cancers(69;0.0534)			GCATAATTTTCTTTTCTGTGA	0.348000													69	33					0	0	0.014410	0	0
NCOA2	10499	broad.mit.edu	37	8	71060647	71060647	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:71060647G>A	uc003xyn.1	-	12	2628	c.2466C>T	c.(2464-2466)TTC>TTT	p.F822F	NCOA2_uc011lfb.1_5'UTR	NM_006540	NP_006531	Q15596	NCOA2_HUMAN	nuclear receptor coactivator 2	822					cellular lipid metabolic process|transcription, DNA-dependent	nucleoplasm	histone acetyltransferase activity|ligand-dependent nuclear receptor binding|nuclear hormone receptor binding|signal transducer activity		PAX3/NCOA2(4)	lung(6)|soft_tissue(4)|breast(2)|skin(2)|ovary(1)|pancreas(1)	16	Breast(64;0.201)		Epithelial(68;0.0147)|OV - Ovarian serous cystadenocarcinoma(28;0.0455)|all cancers(69;0.0606)			TCGTGTCTGGGAAAAGCTGTG	0.493000			T	RUNXBP2	AML						OREG0018819	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	87	67					0	0	0.014410	0	0
TRPA1	8989	broad.mit.edu	37	8	72981320	72981320	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:72981320T>G	uc003xza.2	-	3	557	c.382A>C	c.(382-384)AAC>CAC	p.N128H		NM_007332	NP_015628	O75762	TRPA1_HUMAN	ankyrin-like protein 1	128	Cytoplasmic (Potential).					integral to plasma membrane				ovary(4)|lung(1)|kidney(1)	6			Epithelial(68;0.223)		Menthol(DB00825)	ATGTTGAAGTTTCGGAGATTT	0.478000													115	274					0	0	0.014410	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766821	77766821	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:77766821C>T	uc003yav.2	+	10	7916	c.7529C>T	c.(7528-7530)TCC>TTC	p.S2510F	ZFHX4_uc003yau.1_Missense_Mutation_p.S2555F|ZFHX4_uc003yaw.1_Missense_Mutation_p.S2510F	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2510						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			CTGGGCAGTTCCCTCACTCAA	0.507000										HNSCC(33;0.089)			53	84					0	0	0.014410	0	0
ZFHX4	79776	broad.mit.edu	37	8	77766907	77766907	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:77766907G>A	uc003yav.2	+	10	8002	c.7615G>A	c.(7615-7617)GAT>AAT	p.D2539N	ZFHX4_uc003yau.1_Missense_Mutation_p.D2584N|ZFHX4_uc003yaw.1_Missense_Mutation_p.D2539N	NM_024721	NP_078997	Q86UP3	ZFHX4_HUMAN	zinc finger homeodomain 4	2539						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(8)|large_intestine(4)|breast(2)|lung(1)	15			BRCA - Breast invasive adenocarcinoma(89;0.0895)			GAAACTAGACGATAAAGAAGA	0.507000										HNSCC(33;0.089)			7	46					0	0	0.001984	0	0
ESRP1	54845	broad.mit.edu	37	8	95654216	95654216	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:95654216G>A	uc003ygq.3	+	2	348	c.165G>A	c.(163-165)CCG>CCA	p.P55P	ESRP1_uc003ygr.3_Silent_p.P55P|ESRP1_uc003ygs.3_Silent_p.P55P|ESRP1_uc003ygt.3_Silent_p.P55P|ESRP1_uc003ygu.3_Silent_p.P55P	NM_017697	NP_060167	Q6NXG1	ESRP1_HUMAN	RNA binding motif protein 35A isoform 1	55					mRNA processing|regulation of RNA splicing|RNA splicing	nucleus|plasma membrane	mRNA binding|nucleotide binding		ESRP1/RAF1(4)	prostate(4)	4						TAGTTAGACCGGATCAGTTGG	0.552000													22	78					0	0	0.005443	0	0
RIMS2	9699	broad.mit.edu	37	8	105105712	105105712	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:105105712G>A	uc003yls.2	+	21	2976	c.2735G>A	c.(2734-2736)TGG>TAG	p.W912*	RIMS2_uc003ylp.2_Intron|RIMS2_uc003ylw.2_Nonsense_Mutation_p.W985*|RIMS2_uc003ylq.2_Intron|RIMS2_uc003ylr.2_Intron	NM_014677	NP_055492	Q9UQ26	RIMS2_HUMAN	regulating synaptic membrane exocytosis 2	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					intracellular protein transport	cell junction|presynaptic membrane	metal ion binding|Rab GTPase binding			ovary(6)|lung(2)|breast(2)|skin(2)|large_intestine(1)|central_nervous_system(1)|pancreas(1)	15			OV - Ovarian serous cystadenocarcinoma(57;7.7e-07)|STAD - Stomach adenocarcinoma(118;0.229)			CGATCAGGATGGGATCCTCAT	0.383000										HNSCC(12;0.0054)			137	93					0	0	0.014410	0	0
COLEC10	10584	broad.mit.edu	37	8	120114597	120114597	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:120114597G>A	uc003yoo.2	+	4	400	c.303G>A	c.(301-303)GGG>GGA	p.G101G		NM_006438	NP_006429	Q9Y6Z7	COL10_HUMAN	collectin sub-family member 10 precursor	101	Collagen-like.					collagen|cytoplasm	mannose binding			ovary(2)|skin(1)	3	all_cancers(13;4.13e-26)|Lung NSC(37;1.36e-07)|Ovarian(258;0.018)|Hepatocellular(40;0.234)		STAD - Stomach adenocarcinoma(47;0.00113)			GTGACAAAGGGGAAAAAGGTT	0.244000													15	49					0	0	0.006122	0	0
FER1L6	654463	broad.mit.edu	37	8	125061865	125061865	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:125061865G>A	uc003yqw.2	+	22	2948	c.2742G>A	c.(2740-2742)TTG>TTA	p.L914L	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	914	Cytoplasmic (Potential).|C2 3.					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			CAGAATATTTGGGTGCCACAG	0.468000													42	24					0	0	0.014410	0	0
FER1L6	654463	broad.mit.edu	37	8	125074092	125074092	+	Splice_Site	SNP	G	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:125074092G>C	uc003yqw.2	+	25	3354	c.3148_splice	c.e25-1	p.E1050_splice	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6							integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			TCTCTCTGCAGGAACTGCCTG	0.582000													60	88					0	0	0.014410	0	0
ADCY8	114	broad.mit.edu	37	8	132002665	132002665	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:132002665G>A	uc003ytd.3	-	2	1340	c.1084C>T	c.(1084-1086)CGC>TGC	p.R362C	ADCY8_uc010mds.2_Missense_Mutation_p.R362C	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	362	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GTCTCCAGGCGCAGCCTGGCC	0.502000										HNSCC(32;0.087)			162	74					0	0	0.014410	0	0
FLJ43860	389690	broad.mit.edu	37	8	142504958	142504958	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:142504958C>T	uc003ywi.2	-	4	569	c.488G>A	c.(487-489)TGG>TAG	p.W163*	FLJ43860_uc011ljs.1_RNA|FLJ43860_uc010meu.1_RNA	NM_207414	NP_997297	Q6ZUA9	Q6ZUA9_HUMAN	hypothetical protein LOC389690	163							binding				0	all_cancers(97;7.79e-15)|all_epithelial(106;4.52e-13)|Lung NSC(106;2.07e-05)|all_lung(105;2.89e-05)|Ovarian(258;0.0303)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0493)			AGTTTTCTCCCAGGTCTCCTC	0.612000													3	22					0	0	0.004672	0	0
GPR172A	79581	broad.mit.edu	37	8	145583069	145583069	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:145583069A>G	uc003zcc.1	+	2	273	c.116A>G	c.(115-117)AAA>AGA	p.K39R	FBXL6_uc003zbz.2_5'Flank|FBXL6_uc003zca.2_5'Flank|FBXL6_uc003zcb.2_5'Flank|FBXL6_uc010mfx.2_5'Flank|GPR172A_uc003zcd.1_Missense_Mutation_p.K39R|GPR172A_uc003zce.1_Missense_Mutation_p.K39R|GPR172A_uc010mfy.1_Missense_Mutation_p.K39R|GPR172A_uc003zcf.1_Missense_Mutation_p.K39R|GPR172A_uc011llc.1_Intron	NM_024531	NP_078807	Q9HAB3	RFT3_HUMAN	G protein-coupled receptor 172A precursor	39						integral to plasma membrane	receptor activity|riboflavin transporter activity				0	all_cancers(97;6.64e-12)|all_epithelial(106;2.89e-10)|Lung NSC(106;5.7e-05)|all_lung(105;0.000174)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;4.43e-40)|Epithelial(56;1.48e-39)|all cancers(56;1.49e-34)|BRCA - Breast invasive adenocarcinoma(115;0.0441)|Colorectal(110;0.055)			GTGGTGGTCAAAGAGCTTCCA	0.647000													4	70					0	0	0.009096	0	0
TMED10P1	286102	broad.mit.edu	37	8	146220608	146220608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr8:146220608G>A	uc003zey.2	+	1	358	c.337G>A	c.(337-339)GAA>AAA	p.E113K	ZNF252_uc003zew.3_Intron|ZNF252_uc011llo.1_Intron	NR_002807				Homo sapiens mRNA for Tmp21-II putative transcribed pseudogene.												0						TGAGAGCAAGGAAACAGGGCA	0.408000													47	158					0	0	0.014410	0	0
CBWD1	55871	broad.mit.edu	37	9	156500	156500	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:156500G>T	uc003zga.3	-	7	662	c.556C>A	c.(556-558)CTT>ATT	p.L186I	CBWD1_uc010mgs.2_RNA|CBWD1_uc003zgb.3_Missense_Mutation_p.L150I|CBWD1_uc003zgc.3_Missense_Mutation_p.L186I|CBWD1_uc011llr.1_Missense_Mutation_p.L150I	NM_018491	NP_060961	Q9BRT8	CBWD1_HUMAN	COBW domain containing 1 isoform 1	186							ATP binding|protein binding			ovary(1)	1	all_lung(41;0.218)	all_cancers(5;3.04e-16)|all_epithelial(5;4.68e-12)|all_lung(10;1.94e-10)|Lung NSC(10;3.61e-10)|Acute lymphoblastic leukemia(5;0.00439)|Breast(48;0.0148)|all_hematologic(5;0.024)|Prostate(43;0.122)	Kidney(42;0.112)|KIRC - Kidney renal clear cell carcinoma(5;0.157)	all cancers(5;0.000704)|Lung(218;0.00755)|GBM - Glioblastoma multiforme(5;0.0149)|Epithelial(6;0.0154)		TCATTGATAAGGCCATCAGGT	0.269000													19	32					2.08457e-15	2.14602e-15	0.010818	1	0
PTPRD	5789	broad.mit.edu	37	9	8633430	8633430	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:8633430G>A	uc003zkk.2	-	13	950	c.239C>T	c.(238-240)TCA>TTA	p.S80L	PTPRD_uc003zkp.2_Missense_Mutation_p.S80L|PTPRD_uc003zkq.2_Missense_Mutation_p.S80L|PTPRD_uc003zkr.2_Missense_Mutation_p.S80L|PTPRD_uc003zks.2_Missense_Mutation_p.S80L|PTPRD_uc003zkl.2_Missense_Mutation_p.S80L|PTPRD_uc003zkm.2_Missense_Mutation_p.S80L|PTPRD_uc003zkn.2_Missense_Mutation_p.S80L|PTPRD_uc003zko.2_Missense_Mutation_p.S80L|PTPRD_uc003zkt.1_Missense_Mutation_p.S80L	NM_002839	NP_002830	P23468	PTPRD_HUMAN	protein tyrosine phosphatase, receptor type, D	80	Ig-like C2-type 1.|Extracellular (Potential).				transmembrane receptor protein tyrosine phosphatase signaling pathway	integral to plasma membrane	protein binding|transmembrane receptor protein tyrosine phosphatase activity			lung(14)|large_intestine(3)|ovary(2)|breast(2)|urinary_tract(1)	22		all_cancers(3;3.38e-95)|all_epithelial(3;2.84e-91)|all_lung(3;7.3e-56)|Lung NSC(3;1.82e-52)|Renal(3;3.42e-19)|all_hematologic(3;0.000134)|all_neural(3;0.00409)|Acute lymphoblastic leukemia(23;0.0069)|Melanoma(3;0.0121)|Myeloproliferative disorder(4;0.0122)|Medulloblastoma(3;0.0144)|Lung SC(3;0.0301)|Ovarian(56;0.0694)|Hepatocellular(3;0.0824)		all cancers(1;3.38e-12)|Epithelial(1;2.12e-09)|STAD - Stomach adenocarcinoma(1;1.29e-07)|KIRC - Kidney renal clear cell carcinoma(3;5.49e-07)|Kidney(3;6.36e-07)|GBM - Glioblastoma multiforme(50;9.05e-05)|Lung(1;0.000189)|BRCA - Breast invasive adenocarcinoma(1;0.00178)|LUSC - Lung squamous cell carcinoma(1;0.0115)|LUAD - Lung adenocarcinoma(58;0.119)		TCTGAGAACTGATCCAGACCC	0.428000										TSP Lung(15;0.13)			25	23					0	0	0.005443	0	0
TTC39B	158219	broad.mit.edu	37	9	15172087	15172087	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:15172087G>A	uc003zlr.1	-	20	1902	c.1781C>T	c.(1780-1782)TCC>TTC	p.S594F	TTC39B_uc003zlq.1_Missense_Mutation_p.S563F|TTC39B_uc011lmp.1_Missense_Mutation_p.S495F|TTC39B_uc010mie.1_Missense_Mutation_p.S592F|TTC39B_uc011lmq.1_Missense_Mutation_p.S581F|TTC39B_uc011lmr.1_Missense_Mutation_p.S525F|TTC39B_uc003zlp.1_Missense_Mutation_p.S177F	NM_152574	NP_689787	Q5VTQ0	TT39B_HUMAN	tetratricopeptide repeat domain 39B	594							binding			ovary(1)	1						GGACTCCAGGGAGTAATCTTT	0.408000													23	41					0	0	0.005443	0	0
TAF1L	138474	broad.mit.edu	37	9	32635510	32635510	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:32635510G>A	uc003zrg.1	-	1	158	c.68C>T	c.(67-69)TCG>TTG	p.S23L	uc003zrh.1_Intron	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	23					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		CTCGCTGTCCGAGTCTGACAT	0.567000													61	62					0	0	0.014410	0	0
TMEM2	23670	broad.mit.edu	37	9	74365182	74365182	+	Silent	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:74365182A>G	uc011lsa.1	-	2	648	c.108T>C	c.(106-108)CGT>CGC	p.R36R	TMEM2_uc010mos.2_Silent_p.R36R|TMEM2_uc011lsb.1_RNA	NM_013390	NP_037522	Q9UHN6	TMEM2_HUMAN	transmembrane protein 2 isoform a	36						integral to membrane				ovary(2)	2		all_epithelial(88;4.56e-14)|Myeloproliferative disorder(762;0.0255)		GBM - Glioblastoma multiforme(74;7.45e-21)|OV - Ovarian serous cystadenocarcinoma(323;1.02e-16)		GAGGAGGGGGACGCAATGGGA	0.537000													3	130					0	0	0.000602	0	0
FLJ43859	389761	broad.mit.edu	37	9	84547743	84547743	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:84547743G>T	uc004amh.2	+	4	2753	c.2667G>T	c.(2665-2667)ATG>ATT	p.M889I	uc004ami.1_Intron|uc004amj.1_5'Flank	NM_001145197	NP_001138669	Q6ZUB0	YI020_HUMAN	hypothetical protein LOC389761	889						integral to membrane					0						CCCAGGAGATGTCCTTCCTTA	0.423000													5	5					1.23904e-05	1.25844e-05	0.000602	1	0
SYK	6850	broad.mit.edu	37	9	93650812	93650812	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:93650812G>A	uc004aqz.2	+	13	1943	c.1738G>A	c.(1738-1740)GAA>AAA	p.E580K	SYK_uc004ara.2_Missense_Mutation_p.E557K|SYK_uc004arb.2_Missense_Mutation_p.E557K|SYK_uc004arc.2_Missense_Mutation_p.E580K|SYK_uc011ltr.1_RNA|SYK_uc011lts.1_RNA|SYK_uc011ltt.1_RNA	NM_003177	NP_003168	P43405	KSYK_HUMAN	spleen tyrosine kinase isoform 1	580	Protein kinase.				cell proliferation|integrin-mediated signaling pathway|interspecies interaction between organisms|leukocyte cell-cell adhesion|neutrophil chemotaxis|organ morphogenesis|platelet activation|protein complex assembly	cytosol|T cell receptor complex	ATP binding|integrin binding|non-membrane spanning protein tyrosine kinase activity	p.D580H(1)		lung(2)|stomach(1)|ovary(1)|skin(1)	5						GAAAGGAAGTGAAGTCACCGC	0.418000			T	ETV6|ITK	MDS|peripheral T-cell lymphoma								16	15					0	0	0.006122	0	0
SVEP1	79987	broad.mit.edu	37	9	113208171	113208171	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:113208171G>A	uc010mtz.2	-	26	4746	c.4409C>T	c.(4408-4410)TCC>TTC	p.S1470F	SVEP1_uc010mua.1_Missense_Mutation_p.S1470F	NM_153366	NP_699197	Q4LDE5	SVEP1_HUMAN	polydom	1470	Pentaxin.				cell adhesion	cytoplasm|extracellular region|membrane	calcium ion binding			ovary(7)	7						AACTGCATAGGAGATTGGTGT	0.458000													58	74					0	0	0.014410	0	0
TNC	3371	broad.mit.edu	37	9	117838788	117838788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:117838788C>T	uc004bjj.3	-	8	3103	c.2741G>A	c.(2740-2742)AGG>AAG	p.R914K	TNC_uc010mvf.2_Missense_Mutation_p.R914K	NM_002160	NP_002151	P24821	TENA_HUMAN	tenascin C precursor	914	Fibronectin type-III 4.				cell adhesion|response to wounding|signal transduction	extracellular space	receptor binding|syndecan binding			central_nervous_system(4)|upper_aerodigestive_tract(1)|ovary(1)|skin(1)	7						CTTGCCATTCCTCCATTCCAG	0.483000													213	325					0	0	0.014410	0	0
CEP110	11064	broad.mit.edu	37	9	123912695	123912695	+	Silent	SNP	C	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:123912695C>A	uc004bkx.1	+	23	3928	c.3897C>A	c.(3895-3897)CCC>CCA	p.P1299P	CEP110_uc004bky.1_Silent_p.P903P|CEP110_uc004bla.1_Silent_p.P747P|CEP110_uc010mvo.1_Intron|CEP110_uc004blb.1_5'Flank	NM_007018	NP_008949	Q7Z7A1	CNTRL_HUMAN	centrosomal protein 110kDa	1299	Pro-rich.				cell division|G2/M transition of mitotic cell cycle	centrosome|cytosol	protein binding				0						CTCCACCCCCCAACTTCTCCA	0.547000													28	38					2.47511e-08	2.5423e-08	0.008361	1	0
PTGS1	5742	broad.mit.edu	37	9	125148925	125148925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:125148925G>A	uc004bmg.1	+	9	1345	c.1210G>A	c.(1210-1212)GAG>AAG	p.E404K	PTGS1_uc011lys.1_Intron|PTGS1_uc010mwb.1_Intron|PTGS1_uc004bmf.1_Intron|PTGS1_uc004bmh.1_Missense_Mutation_p.E295K|PTGS1_uc011lyt.1_Missense_Mutation_p.E295K	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	404					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GTACAGCTACGAGCAGTTCTT	0.557000													66	87					0	0	0.014410	0	0
LAMC3	10319	broad.mit.edu	37	9	133963161	133963161	+	Silent	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:133963161G>A	uc004caa.1	+	27	4532	c.4434G>A	c.(4432-4434)CTG>CTA	p.L1478L	LAMC3_uc010mze.1_Silent_p.L166L	NM_006059	NP_006050	Q9Y6N6	LAMC3_HUMAN	laminin, gamma 3 precursor	1478	Domain II and I.|Potential.				cell adhesion	basement membrane|membrane	structural molecule activity			ovary(2)|pancreas(1)	3	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;5.06e-05)|Epithelial(140;0.000551)		GTATCTCACTGGAGAAGGACA	0.612000													25	38					0	0	0.012213	0	0
POLA1	5422	broad.mit.edu	37	X	24734548	24734548	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:24734548C>T	uc004dbl.2	+	7	600	c.577C>T	c.(577-579)CCT>TCT	p.P193S	POLA1_uc004dbm.2_Missense_Mutation_p.P199S|POLA1_uc004dbn.2_Missense_Mutation_p.P57S	NM_016937	NP_058633	P09884	DPOLA_HUMAN	DNA-directed DNA polymerase alpha 1	193					cell proliferation|DNA replication checkpoint|DNA replication, synthesis of RNA primer|DNA-dependent DNA replication initiation|double-strand break repair via nonhomologous end joining|interspecies interaction between organisms|lagging strand elongation|leading strand elongation|M/G1 transition of mitotic cell cycle|regulation of transcription involved in G1/S phase of mitotic cell cycle|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication	alpha DNA polymerase:primase complex|cytoplasm|nuclear envelope|nuclear matrix|nucleolus|nucleoplasm	chromatin binding|DNA-directed DNA polymerase activity|metal ion binding|nucleoside binding			ovary(2)|skin(1)	3					Clofarabine(DB00631)|Fludarabine(DB01073)	TTCACCGAATCCTTTCTCTGT	0.388000													19	3					0	0	0.003330	0	0
FAAH2	158584	broad.mit.edu	37	X	57358231	57358232	+	Missense_Mutation	DNP	GG	TT	TT			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:57358231_57358232GG>TT	uc004dvc.2	+	4	762_763	c.613_614GG>TT	c.(613-615)GGA>TTA	p.G205L		NM_174912	NP_777572	Q6GMR7	FAAH2_HUMAN	fatty acid amide hydrolase 2	205						integral to membrane	carbon-nitrogen ligase activity, with glutamine as amido-N-donor|hydrolase activity			ovary(3)	3						TATTGTAGGTGGAAGTTCTGGT	0.317000										HNSCC(52;0.14)			66	18					0	0	0.004672	0	0
XIST	7503	broad.mit.edu	37	X	73072000	73072000	+	RNA	SNP	A	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:73072000A>C	uc004ebm.1	-	1		c.589T>G				NR_001564				Homo sapiens cDNA: FLJ21545 fis, clone COL06195.												0						AATTTTTAAAAAGCAGATATC	0.458000													5	0					0	0	0.000602	0	0
KIAA2022	340533	broad.mit.edu	37	X	73964130	73964130	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:73964130C>T	uc004eby.2	-	3	879	c.262G>A	c.(262-264)GAA>AAA	p.E88K		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	88					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						GCAGCATGTTCGGGTGCTTCA	0.512000													37	8					0	0	0.013114	0	0
TEX13A	56157	broad.mit.edu	37	X	104463705	104463705	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:104463705A>G	uc004ema.2	-	5	1283	c.1171T>C	c.(1171-1173)TCA>CCA	p.S391P	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_3'UTR	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	391	RanBP2-type.					intracellular	zinc ion binding			ovary(2)	2						TCCCTCCGTGAAAAATTCACA	0.493000													141	30					0	0	0.014410	0	0
TEX13A	56157	broad.mit.edu	37	X	104463950	104463950	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:104463950G>A	uc004ema.2	-	5	1038	c.926C>T	c.(925-927)TCC>TTC	p.S309F	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.P310S	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	309						intracellular	zinc ion binding			ovary(2)	2						TGAGAAGGAGGAAAAAGGGCT	0.527000													23	2					0	0	0.003954	0	0
NRK	203447	broad.mit.edu	37	X	105137924	105137924	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:105137924G>A	uc004emd.2	+	6	781	c.478G>A	c.(478-480)GAA>AAA	p.E160K	NRK_uc010npc.1_5'UTR	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	160	Protein kinase.						ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TATCTGCCGAGAAATCCTTCA	0.398000										HNSCC(51;0.14)			10	1					0	0	0.010729	0	0
NRK	203447	broad.mit.edu	37	X	105179258	105179258	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:105179258C>T	uc004emd.2	+	21	3899	c.3596C>T	c.(3595-3597)CCA>CTA	p.P1199L	NRK_uc010npc.1_Missense_Mutation_p.P867L	NM_198465	NP_940867	Q7Z2Y5	NRK_HUMAN	Nik related kinase	1199							ATP binding|protein serine/threonine kinase activity|small GTPase regulator activity			breast(7)|ovary(3)|lung(2)|large_intestine(1)|central_nervous_system(1)	14						TGTAAAAAACCACTAATCCAC	0.388000										HNSCC(51;0.14)			35	9					0	0	0.004878	0	0
GPR112	139378	broad.mit.edu	37	X	135480114	135480114	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:135480114C>T	uc004ezu.1	+	20	8550	c.8259C>T	c.(8257-8259)ATC>ATT	p.I2753I	GPR112_uc010nsb.1_Silent_p.I2548I	NM_153834	NP_722576	Q8IZF6	GP112_HUMAN	G-protein coupled receptor 112	2753	Helical; Name=1; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(5)|large_intestine(2)|skin(2)|lung(1)|breast(1)|pancreas(1)	12	Acute lymphoblastic leukemia(192;0.000127)					GATGTGGAATCTCCTCCATTT	0.398000													47	14					0	0	0.014410	0	0
ATP11C	286410	broad.mit.edu	37	X	138827914	138827914	+	Silent	SNP	A	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:138827914A>G	uc004faz.2	-	25	3039	c.2940T>C	c.(2938-2940)CTT>CTC	p.L980L	ATP11C_uc004fax.2_Silent_p.L188L|ATP11C_uc004fay.2_RNA|ATP11C_uc004fba.2_Silent_p.L980L	NM_173694	NP_775965	Q8NB49	AT11C_HUMAN	ATPase, class VI, type 11C isoform a	980	Extracellular (Potential).				ATP biosynthetic process	integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			ovary(5)|large_intestine(3)	8	Acute lymphoblastic leukemia(192;0.000127)					CAGTCTGAAAAAGAAAGTAAG	0.403000													11	5					0	0	0.013537	0	0
IDS	3423	broad.mit.edu	37	X	148578029	148578029	+	Missense_Mutation	SNP	G	A	A	rs143474305		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:148578029G>A	uc011mxe.1	-	6	925	c.727C>T	c.(727-729)CCC>TCC	p.P243S	IDS_uc011mxf.1_Missense_Mutation_p.P153S|IDS_uc011mxg.1_Missense_Mutation_p.P32S|IDS_uc010nsu.1_Intron|IDS_uc004fcw.3_Missense_Mutation_p.P32S|IDS_uc011mxh.1_Missense_Mutation_p.P243S|IDS_uc011mxi.1_RNA	NM_000202	NP_000193	P22304	IDS_HUMAN	iduronate-2-sulfatase isoform a precursor	243						lysosome	iduronate-2-sulfatase activity|metal ion binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					TTCTCCAAGGGATACAACTTC	0.517000													47	7					0	0	0.014410	0	0
MAGEA10	4109	broad.mit.edu	37	X	151303157	151303157	+	Silent	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:151303157C>T	uc004ffk.2	-	5	1344	c.936G>A	c.(934-936)CTG>CTA	p.L312L	MAGEA10_uc004ffl.2_Silent_p.L312L	NM_001011543	NP_001011543	P43363	MAGAA_HUMAN	melanoma antigen family A, 10	312	MAGE.										0	Acute lymphoblastic leukemia(192;6.56e-05)					CCAAAAATTTCAGGAGACTCA	0.502000													66	9					0	0	0.014410	0	0
SPRY3	10251	broad.mit.edu	37	X	155004063	155004063	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:155004063C>T	uc004fnq.1	+	2	984	c.530C>T	c.(529-531)TCT>TTT	p.S177F	SPRY3_uc010nvl.1_Intron	NM_005840	NP_005831	O43610	SPY3_HUMAN	sprouty homolog 3	177	SPR.|Cys-rich.				multicellular organismal development|regulation of signal transduction	cytoplasm|membrane					0	all_cancers(53;1.86e-17)|all_epithelial(53;2.71e-11)|all_lung(58;1.84e-07)|Lung NSC(58;5.62e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					TGCCTTTGCTCTGCTGAGAGC	0.582000													73	96					0	0	0.014410	0	0
MEF2A	4205	broad.mit.edu	37	15	100252710	100252712	+	In_Frame_Del	DEL	CAG	-	-			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr15:100252710_100252712delCAG	uc010urw.1	+	11	1617_1619	c.1258_1260delCAG	c.(1258-1260)CAGdel	p.Q430del	MEF2A_uc010urv.1_In_Frame_Del_p.Q360del|MEF2A_uc010bos.2_In_Frame_Del_p.Q420del|MEF2A_uc002bvf.2_In_Frame_Del_p.Q422del|MEF2A_uc002bve.2_In_Frame_Del_p.Q428del|MEF2A_uc002bvg.2_In_Frame_Del_p.Q420del|MEF2A_uc002bvi.2_In_Frame_Del_p.Q420del|MEF2A_uc010bot.2_In_Frame_Del_p.Q352del	NM_005587	NP_005578	Q02078	MEF2A_HUMAN	myocyte enhancer factor 2A isoform 1	430	Gln/Pro-rich.			Missing (in Ref. 4; AAB17195/AAB17196).	apoptosis|BMK cascade|cardiac conduction|cellular response to calcium ion|dendrite morphogenesis|innate immune response|mitochondrial genome maintenance|mitochondrion distribution|muscle organ development|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of muscle cell differentiation|positive regulation of transcription from RNA polymerase II promoter|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|ventricular cardiac myofibril development	nuclear chromatin|nucleoplasm	activating transcription factor binding|histone acetyltransferase binding|histone deacetylase binding|protein heterodimerization activity|RNA polymerase II regulatory region sequence-specific DNA binding|sequence-specific DNA binding RNA polymerase II transcription factor activity|SMAD binding			ovary(1)	1	Lung NSC(78;0.00335)|all_lung(78;0.00659)|Melanoma(26;0.00778)|Medulloblastoma(229;0.163)		OV - Ovarian serous cystadenocarcinoma(32;0.00085)			ATCGGGCTTCcagcagcagcagc	0.493													3	5	---	---	---	---					
PPP1R15A	23645	broad.mit.edu	37	19	49377548	49377549	+	Frame_Shift_Ins	INS	-	G	G			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr19:49377548_49377549insG	uc002pky.3	+	2	1327_1328	c.1058_1059insG	c.(1057-1059)GAGfs	p.E353fs		NM_014330	NP_055145	O75807	PR15A_HUMAN	protein phosphatase 1, regulatory subunit 15A	353	4 X 34 AA approximate repeats.|Glu-rich.|Interaction with SMAD7.|1.				apoptosis|cell cycle arrest|regulation of translation|response to DNA damage stimulus	endoplasmic reticulum	protein binding			lung(1)	1		all_epithelial(76;5.29e-07)|all_lung(116;1.7e-06)|Lung NSC(112;3.55e-06)|all_neural(266;0.0189)|Ovarian(192;0.0261)		OV - Ovarian serous cystadenocarcinoma(262;0.000244)|all cancers(93;0.000694)|GBM - Glioblastoma multiforme(486;0.0222)|Epithelial(262;0.033)		ACAGAGGAAGAGGAAGATGAGG	0.545													59	19	---	---	---	---					
C2orf71	388939	broad.mit.edu	37	2	29295647	29295649	+	In_Frame_Del	DEL	TCC	-	-			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:29295647_29295649delTCC	uc002rmt.1	-	1	1479_1481	c.1479_1481delGGA	c.(1477-1482)GAGGAA>GAA	p.493_494EE>E		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	493_494					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CATTTTGTCTTCCTCCTCCTCCT	0.542													7	226	---	---	---	---					
NRXN1	9378	broad.mit.edu	37	2	50779986	50779987	+	Frame_Shift_Ins	INS	-	C	C			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr2:50779986_50779987insC	uc010fbq.2	-	9	3094_3095	c.1617_1618insG	c.(1615-1620)AAGAAAfs	p.K539fs	NRXN1_uc002rxb.3_Frame_Shift_Ins_p.K171fs|NRXN1_uc002rxe.3_Frame_Shift_Ins_p.K499fs|NRXN1_uc002rxc.1_RNA	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GAGCCAGTTTTCTTTGCATTCC	0.426													28	43	---	---	---	---					
KCTD8	386617	broad.mit.edu	37	4	44449940	44449942	+	In_Frame_Del	DEL	CGC	-	-			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr4:44449940_44449942delCGC	uc003gwu.2	-	1	883_885	c.599_601delGCG	c.(598-603)GGCGCG>GCG	p.G200del		NM_198353	NP_938167	Q6ZWB6	KCTD8_HUMAN	potassium channel tetramerisation domain	200	Poly-Gly.					cell junction|postsynaptic membrane|presynaptic membrane|voltage-gated potassium channel complex	voltage-gated potassium channel activity			central_nervous_system(2)|ovary(1)	3						TTGTCCTGCGcgccgccgccgcc	0.389										HNSCC(17;0.042)			2	4	---	---	---	---					
DNAJC2	27000	broad.mit.edu	37	7	102964992	102964992	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr7:102964992delT	uc003vbo.2	-	6	841	c.590delA	c.(589-591)AATfs	p.N197fs	PMPCB_uc011kll.1_Intron|DNAJC2_uc003vbn.2_Translation_Start_Site|DNAJC2_uc010lix.2_Frame_Shift_Del_p.N197fs|DNAJC2_uc003vbp.2_Translation_Start_Site|DNAJC2_uc003vbq.1_RNA	NM_014377	NP_055192	Q99543	DNJC2_HUMAN	DnaJ (Hsp40) homolog, subfamily C, member 2	197	ZRF1-UBD.				'de novo' cotranslational protein folding|chromatin modification|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|nuclear membrane	chromatin binding|DNA binding|histone binding|Hsp70 protein binding|ubiquitin binding			kidney(1)	1						TTTAGGAACATTTTTTTTATT	0.234													7	221	---	---	---	---					
GNAQ	2776	broad.mit.edu	37	9	80336308	80336321	+	Frame_Shift_Del	DEL	GATATTCTCGGTGT	-	-	rs1059527		TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chr9:80336308_80336321delGATATTCTCGGTGT	uc004akw.2	-	7	1039_1052	c.998_1011delACACCGAGAATATC	c.(997-1011)GACACCGAGAATATCfs	p.D333fs	GNAQ_uc011lso.1_Frame_Shift_Del_p.D131fs|GNAQ_uc004akv.1_5'Flank	NM_002072	NP_002063	P50148	GNAQ_HUMAN	guanine nucleotide binding protein (G protein),	333_337				I -> V (in Ref. 5; AAB64301).	activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity by dopamine receptor signaling pathway|glutamate signaling pathway|negative regulation of protein kinase activity|platelet activation|protein ADP-ribosylation|protein stabilization|regulation of action potential|regulation of catenin import into nucleus	cytoplasm|heterotrimeric G-protein complex	G-protein beta/gamma-subunit complex binding|G-protein-coupled receptor binding|GTP binding|GTPase activator activity|GTPase activity|signal transducer activity			eye(136)|skin(44)|meninges(11)|ovary(1)|kidney(1)	193						AGACAAAGCGGATATTCTCGGTGTCTGTGGCGCA	0.519			Mis		uveal melanoma								16	51	---	---	---	---					
HCFC1	3054	broad.mit.edu	37	X	153217426	153217428	+	In_Frame_Del	DEL	TGC	-	-			TCGA-EE-A3J4-06A-11D-A20D-08	TCGA-EE-A3J4-10A-01D-A20D-08									Somatic	Phase_I	Capture				Illumina GAIIx	79bc1848-92d8-4c66-94ab-2cdf2cbcb53d	91c402ba-d285-4495-8bb0-1231c47e51fa	g.chrX:153217426_153217428delTGC	uc004fjp.2	-	20	5652_5654	c.5124_5126delGCA	c.(5122-5127)CAGCAT>CAT	p.Q1708del		NM_005334	NP_005325	P51610	HCFC1_HUMAN	host cell factor 1	1708					cell cycle|interspecies interaction between organisms|positive regulation of cell cycle|positive regulation of gene expression|protein stabilization|reactivation of latent virus|regulation of protein complex assembly|transcription from RNA polymerase II promoter	mitochondrion|MLL1 complex|MLL5-L complex|Set1C/COMPASS complex	chromatin binding|identical protein binding|sequence-specific DNA binding transcription factor activity|transcription coactivator activity			ovary(2)	2	all_cancers(53;6.23e-16)|all_epithelial(53;5.61e-10)|all_lung(58;3.99e-07)|Lung NSC(58;5.02e-07)|all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					GAGGTGGTGATGCTGCTGCTGGG	0.660													2	4	---	---	---	---					
