Hugo_Symbol	Entrez_Gene_Id	Center	NCBI_Build	Chromosome	Start_position	End_position	Strand	Variant_Classification	Variant_Type	Reference_Allele	Tumor_Seq_Allele1	Tumor_Seq_Allele2	dbSNP_RS	dbSNP_Val_Status	Tumor_Sample_Barcode	Matched_Norm_Sample_Barcode	Match_Norm_Seq_Allele1	Match_Norm_Seq_Allele2	Tumor_Validation_Allele1	Tumor_Validation_Allele2	Match_Norm_Validation_Allele1	Match_Norm_Validation_Allele2	Verification_Status	Validation_Status	Mutation_Status	Sequencing_Phase	Sequence_Source	Validation_Method	Score	BAM_file	Sequencer	Tumor_Sample_UUID	Matched_Norm_Sample_UUID	Genome_Change	Annotation_Transcript	Transcript_Strand	Transcript_Exon	Transcript_Position	cDNA_Change	Codon_Change	Protein_Change	Other_Transcripts	Refseq_mRNA_Id	Refseq_prot_Id	SwissProt_acc_Id	SwissProt_entry_Id	Description	UniProt_AApos	UniProt_Region	UniProt_Site	UniProt_Natural_Variations	UniProt_Experimental_Info	GO_Biological_Process	GO_Cellular_Component	GO_Molecular_Function	COSMIC_overlapping_mutations	COSMIC_fusion_genes	COSMIC_tissue_types_affected	COSMIC_total_alterations_in_gene	Tumorscape_Amplification_Peaks	Tumorscape_Deletion_Peaks	TCGAscape_Amplification_Peaks	TCGAscape_Deletion_Peaks	DrugBank	ref_context	gc_content	CCLE_ONCOMAP_overlapping_mutations	CCLE_ONCOMAP_total_mutations_in_gene	CGC_Mutation_Type	CGC_Translocation_Partner	CGC_Tumor_Types_Somatic	CGC_Tumor_Types_Germline	CGC_Other_Diseases	DNARepairGenes_Role	FamilialCancerDatabase_Syndromes	MUTSIG_Published_Results	OREGANNO_ID	OREGANNO_Values	t_alt_count	t_ref_count	validation_status	validation_method	validation_tumor_sample	validation_alt_allele	pox	qox	pox_cutoff	isArtifactMode	oxoGCut
TNFRSF18	8784	broad.mit.edu	37	1	1139306	1139306	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:1139306G>A	uc001adc.2	-	5	782	c.644C>T	c.(643-645)GCC>GTC	p.A215V	TNFRSF18_uc001ada.2_Missense_Mutation_p.A143V|TNFRSF18_uc001adb.2_Missense_Mutation_p.A208V|TNFRSF18_uc001add.2_Missense_Mutation_p.P145S	NM_004195	NP_004186	Q9Y5U5	TNR18_HUMAN	tumor necrosis factor receptor superfamily,	215	Cytoplasmic (Potential).				anti-apoptosis|apoptosis	extracellular region|integral to plasma membrane	tumor necrosis factor receptor activity				0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;8.75e-19)|all_lung(118;2.3e-08)|Lung NSC(185;2.38e-06)|Renal(390;0.00183)|Breast(487;0.00354)|Hepatocellular(190;0.00826)|Myeloproliferative disorder(586;0.0122)|Ovarian(437;0.0308)|Lung SC(97;0.128)		Epithelial(90;3.73e-36)|OV - Ovarian serous cystadenocarcinoma(86;1.01e-21)|Colorectal(212;3.94e-05)|COAD - Colon adenocarcinoma(227;4.22e-05)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.199)		GCAGCTTCTGGCGTCTTCGGT	0.706000													17	17					0	0	1	0	0
MXRA8	54587	broad.mit.edu	37	1	1290660	1290660	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:1290660C>G	uc001aew.2	-	4	473	c.442G>C	c.(442-444)GAG>CAG	p.E148Q	MXRA8_uc001aex.3_Missense_Mutation_p.E148Q|MXRA8_uc001aey.3_Missense_Mutation_p.E148Q|MXRA8_uc010nyl.1_Missense_Mutation_p.E148Q|MXRA8_uc001aez.2_Missense_Mutation_p.E47Q|MXRA8_uc001afa.2_Missense_Mutation_p.E139Q	NM_032348	NP_115724	Q9BRK3	MXRA8_HUMAN	matrix-remodelling associated 8 precursor	148	Extracellular (Potential).|Ig-like V-type 1.					integral to membrane					0	all_cancers(77;0.00164)|all_epithelial(69;0.000959)|all_lung(157;0.00963)|Lung NSC(156;0.0232)|Ovarian(185;0.0634)	all_epithelial(116;9.48e-15)|all_lung(118;9.67e-07)|Lung NSC(185;5.59e-05)|Renal(390;0.00571)|Breast(487;0.0183)|Hepatocellular(190;0.0268)|Myeloproliferative disorder(586;0.028)|Ovarian(437;0.127)|Lung SC(97;0.217)		Epithelial(90;2.83e-35)|OV - Ovarian serous cystadenocarcinoma(86;3.77e-21)|Colorectal(212;0.000155)|COAD - Colon adenocarcinoma(227;0.000193)|Kidney(185;0.00227)|BRCA - Breast invasive adenocarcinoma(365;0.0025)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0339)|Lung(427;0.145)		GCCAGGCTCTCGTAGAGGTGG	0.502000													17	103					0	0	1	0	0
NPHP4	261734	broad.mit.edu	37	1	5934598	5934598	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:5934598G>A	uc001alq.1	-	22	3430	c.3164C>T	c.(3163-3165)CCC>CTC	p.P1055L		NM_015102	NP_055917	O75161	NPHP4_HUMAN	nephroretinin	1055					actin cytoskeleton organization|cell-cell adhesion|signal transduction|visual behavior	cell-cell junction|centrosome|cilium|microtubule basal body	protein binding|structural molecule activity			pancreas(1)	1	Ovarian(185;0.0634)	all_cancers(23;7.53e-41)|all_epithelial(116;3.96e-23)|all_lung(118;5.12e-09)|all_hematologic(16;5.45e-07)|Lung NSC(185;5.49e-07)|all_neural(13;3.21e-06)|Acute lymphoblastic leukemia(12;3.44e-05)|Breast(487;0.000601)|Renal(390;0.0007)|Colorectal(325;0.00113)|Hepatocellular(190;0.00213)|Glioma(11;0.00223)|Myeloproliferative disorder(586;0.0256)|Ovarian(437;0.04)|Lung SC(97;0.128)|Medulloblastoma(700;0.213)		Epithelial(90;1.69e-36)|GBM - Glioblastoma multiforme(13;5.07e-29)|OV - Ovarian serous cystadenocarcinoma(86;1.05e-19)|Colorectal(212;4.54e-07)|COAD - Colon adenocarcinoma(227;3.14e-05)|Kidney(185;0.00012)|BRCA - Breast invasive adenocarcinoma(365;0.00102)|KIRC - Kidney renal clear cell carcinoma(229;0.00179)|STAD - Stomach adenocarcinoma(132;0.00472)|READ - Rectum adenocarcinoma(331;0.0649)		GGTCTCGTGGGGGCGCAGGTA	0.647000													4	17					0	0	1	0	0
KLHL21	9903	broad.mit.edu	37	1	6653691	6653691	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:6653691G>A	uc001aoa.2	-	4	1580	c.1528C>T	c.(1528-1530)CTT>TTT	p.L510F	KLHL21_uc001anz.1_3'UTR|KLHL21_uc009vme.2_Missense_Mutation_p.L143F	NM_014851	NP_055666	Q9UJP4	KLH21_HUMAN	kelch-like 21	510	Kelch 5.				anaphase|cytokinesis|mitosis|protein ubiquitination	Cul3-RING ubiquitin ligase complex|cytoplasm|polar microtubule				central_nervous_system(1)	1	Ovarian(185;0.0212)|all_lung(157;0.154)	all_cancers(23;7.39e-28)|all_epithelial(116;1.76e-17)|all_lung(118;2.27e-05)|Lung NSC(185;9.97e-05)|Renal(390;0.00188)|Breast(487;0.00289)|Colorectal(325;0.00342)|Hepatocellular(190;0.0218)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.156)		Colorectal(212;1.36e-07)|COAD - Colon adenocarcinoma(227;1.4e-05)|Kidney(185;4.95e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000528)|KIRC - Kidney renal clear cell carcinoma(229;0.000927)|STAD - Stomach adenocarcinoma(132;0.0172)|READ - Rectum adenocarcinoma(331;0.0644)		TTCCCCCCAAGGACGGCCAGG	0.617000													12	62					0	0	1	0	0
CAMTA1	23261	broad.mit.edu	37	1	7151394	7151394	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:7151394A>C	uc001aoi.2	+	4	472	c.265A>C	c.(265-267)AAA>CAA	p.K89Q		NM_015215	NP_056030	Q9Y6Y1	CMTA1_HUMAN	calmodulin-binding transcription activator 1	89	CG-1.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	calmodulin binding			ovary(5)|central_nervous_system(2)|breast(1)|pancreas(1)	9	Ovarian(185;0.0634)	all_epithelial(116;8.38e-23)|all_lung(118;5.87e-07)|Lung NSC(185;3.43e-06)|Renal(390;0.000219)|Breast(487;0.000307)|Colorectal(325;0.000615)|Hepatocellular(190;0.0088)|Myeloproliferative disorder(586;0.0303)|Ovarian(437;0.0388)		UCEC - Uterine corpus endometrioid carcinoma (279;0.101)|Colorectal(212;1.33e-05)|COAD - Colon adenocarcinoma(227;0.000235)|BRCA - Breast invasive adenocarcinoma(304;0.000864)|Kidney(185;0.00244)|STAD - Stomach adenocarcinoma(132;0.00644)|KIRC - Kidney renal clear cell carcinoma(229;0.0179)|READ - Rectum adenocarcinoma(331;0.133)		AACATTTGAGAAACACGAAGA	0.348000													24	28					0	0	1	0	0
PRAMEF1	65121	broad.mit.edu	37	1	12853499	12853499	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:12853499G>A	uc001auj.1	+	2	226	c.123G>A	c.(121-123)ATG>ATA	p.M41I		NM_023013	NP_075389	O95521	PRAM1_HUMAN	PRAME family member 1	41											0	Ovarian(185;0.249)	Renal(390;0.000469)|Lung NSC(185;0.00143)|all_lung(284;0.00181)|Colorectal(325;0.00215)|Breast(348;0.0042)|Myeloproliferative disorder(586;0.0393)|Hepatocellular(190;0.0623)|Ovarian(437;0.0731)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00812)|Colorectal(212;4.88e-06)|Kidney(185;4.89e-05)|KIRC - Kidney renal clear cell carcinoma(229;0.000194)|COAD - Colon adenocarcinoma(227;0.000241)|BRCA - Breast invasive adenocarcinoma(304;0.000293)|STAD - Stomach adenocarcinoma(313;0.0072)|READ - Rectum adenocarcinoma(331;0.0649)		CACTCTTCATGGAGGCCTTCA	0.587000													39	70					0	0	1	0	0
PDPN	10630	broad.mit.edu	37	1	13940885	13940885	+	Missense_Mutation	SNP	G	A	A	rs147446446	byFrequency	TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:13940885G>A	uc001avd.2	+	5	738	c.689G>A	c.(688-690)CGA>CAA	p.R230Q	PDPN_uc001avc.2_Missense_Mutation_p.R230Q|PDPN_uc009vob.2_Missense_Mutation_p.R112Q|PDPN_uc009voc.2_Missense_Mutation_p.R112Q|PDPN_uc001ave.2_Missense_Mutation_p.R112Q|PDPN_uc001avf.2_Missense_Mutation_p.R112Q	NM_006474	NP_006465	Q86YL7	PDPN_HUMAN	lung type-I cell membrane-associated	154	Cytoplasmic (Potential).				cell morphogenesis|lymphangiogenesis|regulation of cell shape	filopodium membrane|integral to plasma membrane|lamellipodium membrane|microvillus membrane|ruffle membrane				ovary(2)	2	Ovarian(185;0.249)	all_lung(284;2.29e-05)|Lung NSC(185;4.37e-05)|Renal(390;0.000147)|Breast(348;0.000162)|Colorectal(325;0.00058)|Ovarian(437;0.00965)|Hepatocellular(190;0.0245)|Myeloproliferative disorder(586;0.0255)	GBM - Glioblastoma multiforme(2;0.00182)	UCEC - Uterine corpus endometrioid carcinoma (279;0.00969)|Colorectal(212;4.48e-06)|COAD - Colon adenocarcinoma(227;0.000194)|BRCA - Breast invasive adenocarcinoma(304;0.000347)|Kidney(185;0.00087)|KIRC - Kidney renal clear cell carcinoma(229;0.0027)|STAD - Stomach adenocarcinoma(313;0.00802)|READ - Rectum adenocarcinoma(331;0.0678)		GTGGTTATGCGAAAAATGTCG	0.418000													30	114					0	0	1	0	0
ATP13A2	23400	broad.mit.edu	37	1	17331925	17331925	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:17331925G>A	uc001baa.2	-	3	422	c.232C>T	c.(232-234)CGG>TGG	p.R78W	ATP13A2_uc001bab.2_Missense_Mutation_p.R78W|ATP13A2_uc001bac.2_Missense_Mutation_p.R78W	NM_022089	NP_071372	Q9NQ11	AT132_HUMAN	ATPase type 13A2 isoform 1	78	Cytoplasmic (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			skin(2)|ovary(1)|central_nervous_system(1)	4		Colorectal(325;0.000147)|Breast(348;0.00104)|Renal(390;0.00145)|Lung NSC(340;0.00566)|all_lung(284;0.00797)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0646)		UCEC - Uterine corpus endometrioid carcinoma (279;0.00462)|COAD - Colon adenocarcinoma(227;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;1.99e-05)|Kidney(64;0.000171)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00645)|READ - Rectum adenocarcinoma(331;0.0649)|Lung(427;0.182)		TTGCAGGGCCGGAGCCGCAGC	0.572000													11	14					0	0	1	0	0
PLA2G2A	5320	broad.mit.edu	37	1	20305231	20305231	+	Silent	SNP	G	A	A	rs148271639		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:20305231G>A	uc001bcu.2	-	2	254	c.36C>T	c.(34-36)ATC>ATT	p.I12I	PLA2G2A_uc001bcv.2_Silent_p.I12I|PLA2G2A_uc010oda.1_Silent_p.I12I|PLA2G2A_uc010odb.1_Silent_p.I12I	NM_001161729	NP_001155201	P14555	PA2GA_HUMAN	phospholipase A2, group IIA precursor	12				I -> Y (in Ref. 4; AAT73043).	defense response to Gram-positive bacterium|lipid catabolic process|low-density lipoprotein particle remodeling|phosphatidic acid metabolic process|positive regulation of inflammatory response|positive regulation of macrophage derived foam cell differentiation	endoplasmic reticulum|extracellular space|membrane	calcium ion binding|calcium-dependent phospholipase A2 activity|phospholipid binding				0		Colorectal(325;0.000147)|Renal(390;0.000469)|all_lung(284;0.00459)|Lung NSC(340;0.00475)|Breast(348;0.00526)|Myeloproliferative disorder(586;0.0393)|Ovarian(437;0.0427)		UCEC - Uterine corpus endometrioid carcinoma (279;0.018)|COAD - Colon adenocarcinoma(152;1.11e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000138)|Kidney(64;0.000171)|GBM - Glioblastoma multiforme(114;0.00032)|KIRC - Kidney renal clear cell carcinoma(64;0.00258)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.0649)		TCTTACCAAAGATCATGATCA	0.527000													28	45					0	0	1	0	0
HSPG2	3339	broad.mit.edu	37	1	22158151	22158152	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:22158151_22158152GG>AA	uc001bfj.2	-	82	11385_11386	c.11345_11346CC>TT	c.(11344-11346)ACC>ATT	p.T3782I	HSPG2_uc001bfi.2_5'Flank|HSPG2_uc009vqd.2_Missense_Mutation_p.T3783I	NM_005529	NP_005520	P98160	PGBM_HUMAN	heparan sulfate proteoglycan 2 precursor	3782	Laminin G-like 1.				angiogenesis|cell adhesion|lipid metabolic process|lipoprotein metabolic process	basement membrane|extracellular space|plasma membrane	protein C-terminus binding			ovary(5)|large_intestine(2)|central_nervous_system(1)|skin(1)	9		Colorectal(325;3.46e-05)|all_lung(284;7.93e-05)|Lung NSC(340;8.71e-05)|Renal(390;0.000219)|Breast(348;0.00222)|Ovarian(437;0.00308)|Myeloproliferative disorder(586;0.0255)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0498)|OV - Ovarian serous cystadenocarcinoma(117;1.14e-26)|Colorectal(126;4.18e-07)|COAD - Colon adenocarcinoma(152;1.82e-05)|GBM - Glioblastoma multiforme(114;3.13e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000756)|STAD - Stomach adenocarcinoma(196;0.00656)|KIRC - Kidney renal clear cell carcinoma(1967;0.00942)|READ - Rectum adenocarcinoma(331;0.0721)|Lung(427;0.223)	Becaplermin(DB00102)|Palifermin(DB00039)	TCACCTGGGAGGTCCCATTGAC	0.649000													4	9					0	0	1	0	0
EPHB2	2048	broad.mit.edu	37	1	23233420	23233420	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:23233420G>A	uc009vqj.1	+	11	2251	c.2106G>A	c.(2104-2106)ATG>ATA	p.M702I	EPHB2_uc001bge.2_Missense_Mutation_p.M703I|EPHB2_uc001bgf.2_Missense_Mutation_p.M702I|EPHB2_uc010odu.1_Missense_Mutation_p.M644I	NM_017449	NP_059145	P29323	EPHB2_HUMAN	ephrin receptor EphB2 isoform 1 precursor	702	Cytoplasmic (Potential).|Protein kinase.				axon guidance	integral to plasma membrane	ATP binding|transmembrane-ephrin receptor activity			ovary(3)|lung(1)|pancreas(1)	5		Colorectal(325;3.46e-05)|Lung NSC(340;3.7e-05)|all_lung(284;5.45e-05)|Renal(390;0.000228)|Breast(348;0.0027)|Ovarian(437;0.00327)|Myeloproliferative disorder(586;0.0258)		UCEC - Uterine corpus endometrioid carcinoma (279;0.0348)|OV - Ovarian serous cystadenocarcinoma(117;3.67e-26)|Colorectal(126;3.23e-08)|COAD - Colon adenocarcinoma(152;9.32e-07)|GBM - Glioblastoma multiforme(114;2.93e-05)|BRCA - Breast invasive adenocarcinoma(304;0.000606)|KIRC - Kidney renal clear cell carcinoma(1967;0.00371)|STAD - Stomach adenocarcinoma(196;0.00644)|READ - Rectum adenocarcinoma(331;0.126)|Lung(427;0.153)		CCGAGTTCATGGAGAATGGCT	0.567000									Hereditary_Prostate_Cancer				5	43					0	0	1	0	0
MIR1976	100302190	broad.mit.edu	37	1	26881071	26881071	+	RNA	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:26881071G>A	hsa-mir-1976|MI0009986	+			c.39G>A			RPS6KA1_uc001bmr.1_Intron|RPS6KA1_uc010ofe.1_Intron|RPS6KA1_uc010off.1_Intron|RPS6KA1_uc001bms.1_Intron|RPS6KA1_uc009vsl.1_Intron																	0						GTGTCCTCCTGCCCTCCTTGC	0.537000													30	87					0	0	1	0	0
GMEB1	10691	broad.mit.edu	37	1	29041276	29041276	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:29041276A>T	uc001bra.2	+	10	1851	c.1713A>T	c.(1711-1713)TTA>TTT	p.L571F	GMEB1_uc001bqz.2_Missense_Mutation_p.L561F|GMEB1_uc001brb.2_Missense_Mutation_p.L561F	NM_006582	NP_006573	Q9Y692	GMEB1_HUMAN	glucocorticoid modulatory element binding	571					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|metal ion binding|transcription coactivator activity				0		Colorectal(325;3.46e-05)|Lung NSC(340;0.000451)|all_lung(284;0.00063)|Breast(348;0.00502)|Renal(390;0.00555)|all_neural(195;0.0227)|Myeloproliferative disorder(586;0.0255)|Ovarian(437;0.0563)|Medulloblastoma(700;0.123)		Colorectal(126;2.96e-08)|COAD - Colon adenocarcinoma(152;1.7e-06)|STAD - Stomach adenocarcinoma(196;0.00299)|BRCA - Breast invasive adenocarcinoma(304;0.0221)|KIRC - Kidney renal clear cell carcinoma(1967;0.0296)|READ - Rectum adenocarcinoma(331;0.0649)		TTGTGGTCTTAGAGGATTAAC	0.408000													27	86					0	0	1	0	0
HCRTR1	3061	broad.mit.edu	37	1	32092393	32092393	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:32092393A>G	uc009vtx.2	+	9	1475	c.1090A>G	c.(1090-1092)AAA>GAA	p.K364E	HCRTR1_uc001btb.2_Missense_Mutation_p.K189E|HCRTR1_uc001btc.3_Intron|HCRTR1_uc001btd.2_Missense_Mutation_p.K364E|HCRTR1_uc010ogl.1_Intron	NM_001525	NP_001516	O43613	OX1R_HUMAN	orexin receptor 1	364	Cytoplasmic (Potential).				feeding behavior|neuropeptide signaling pathway|synaptic transmission	integral to plasma membrane				ovary(1)	1		Ovarian(437;0.0221)|Myeloproliferative disorder(586;0.0255)|all_neural(195;0.0837)|Breast(348;0.116)		STAD - Stomach adenocarcinoma(196;0.053)		CAACCAAGGCAAATTCCGGGA	0.622000													63	92					0	0	1	0	0
SPOCD1	90853	broad.mit.edu	37	1	32256881	32256881	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:32256881G>A	uc001bts.1	-	16	3032	c.2974C>T	c.(2974-2976)CTT>TTT	p.L992F	SPOCD1_uc001btr.1_3'UTR|SPOCD1_uc001btt.2_Intron|SPOCD1_uc001btu.2_Intron|SPOCD1_uc001btv.2_Intron	NM_144569	NP_653170	Q6ZMY3	SPOC1_HUMAN	SPOC domain containing 1	992					transcription, DNA-dependent					ovary(5)|breast(1)	6		Myeloproliferative disorder(586;0.0393)|all_neural(195;0.186)|Ovarian(437;0.199)		STAD - Stomach adenocarcinoma(196;0.18)		GAGACAGGAAGAGCCCAAAGG	0.582000													13	26					0	0	1	0	0
CSMD2	114784	broad.mit.edu	37	1	34011783	34011783	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:34011783G>T	uc001bxn.1	-	56	8551	c.8522C>A	c.(8521-8523)CCG>CAG	p.P2841Q	CSMD2_uc001bxm.1_Missense_Mutation_p.P2985Q	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	2841	Extracellular (Potential).|Sushi 20.					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				GCCATGAGCCGGGATCCCAGG	0.572000													17	32					7.41877e-09	7.57551e-09	1	1	0
CSMD2	114784	broad.mit.edu	37	1	34190997	34190997	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:34190997G>C	uc001bxn.1	-	17	2557	c.2528C>G	c.(2527-2529)TCT>TGT	p.S843C	CSMD2_uc001bxm.1_Missense_Mutation_p.S883C	NM_052896	NP_443128	Q7Z408	CSMD2_HUMAN	CUB and Sushi multiple domains 2	843	CUB 5.|Extracellular (Potential).					integral to membrane|plasma membrane	protein binding			ovary(6)|skin(5)|pancreas(1)	12		Myeloproliferative disorder(586;0.0294)|all_neural(195;0.249)				CTTGTCGGTAGAGAAGAGGAG	0.577000													8	40					0	0	1	0	0
MPL	4352	broad.mit.edu	37	1	43812473	43812473	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:43812473C>T	uc001ciw.2	+	8	1221	c.1176C>T	c.(1174-1176)CCC>CCT	p.P392P	MPL_uc001civ.2_Silent_p.P392P|MPL_uc009vwr.2_Silent_p.P385P	NM_005373	NP_005364	P40238	TPOR_HUMAN	myeloproliferative leukemia virus oncogene	392	Extracellular (Potential).				cell proliferation|platelet activation	integral to plasma membrane	cytokine receptor activity			haematopoietic_and_lymphoid_tissue(361)|upper_aerodigestive_tract(1)|pancreas(1)	363	all_hematologic(146;0.0958)|Acute lymphoblastic leukemia(166;0.155)	Myeloproliferative disorder(586;0.0505)				TGCGCCTCCCCACCCCAAACT	0.577000			Mis		MPD	MPD	congenital amegakaryocytic thrombocytopenia						46	187					0	0	1	0	0
NASP	4678	broad.mit.edu	37	1	46073286	46073286	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:46073286G>A	uc001coi.1	+	6	805	c.703G>A	c.(703-705)GAA>AAA	p.E235K	NASP_uc010olq.1_Missense_Mutation_p.E198K|NASP_uc001coh.1_Missense_Mutation_p.E237K|NASP_uc001coj.1_Intron|NASP_uc010olr.1_Missense_Mutation_p.E171K|NASP_uc001cok.1_Missense_Mutation_p.E118K	NM_002482	NP_002473	P49321	NASP_HUMAN	nuclear autoantigenic sperm protein isoform 2	235	Histone-binding.|Glu-rich (acidic).				blastocyst development|cell cycle|cell proliferation|DNA replication|histone exchange|protein transport	cytoplasm|nucleus	Hsp90 protein binding			ovary(1)	1	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.211)					GCCAGAACAGGAAGTACCAGA	0.473000													15	47					0	0	1	0	0
MAST2	23139	broad.mit.edu	37	1	46501231	46501231	+	Silent	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:46501231T>G	uc001cov.2	+	29	5173	c.4890T>G	c.(4888-4890)CTT>CTG	p.L1630L	MAST2_uc001cow.2_Silent_p.L1629L|MAST2_uc001cpa.2_RNA	NM_015112	NP_055927	Q6P0Q8	MAST2_HUMAN	microtubule associated serine/threonine kinase	1630					regulation of interleukin-12 biosynthetic process|spermatid differentiation	cytoplasm|cytoskeleton|plasma membrane	ATP binding|magnesium ion binding|phosphatase binding|protein serine/threonine kinase activity			ovary(5)|lung(3)|stomach(2)|breast(1)	11	Acute lymphoblastic leukemia(166;0.155)|Lung SC(450;0.184)					TAACAGCACTTTCTCCCAGCA	0.602000													35	88					0	0	1	0	0
IL23R	149233	broad.mit.edu	37	1	67633822	67633822	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:67633822C>T	uc001ddo.2	+	2	104	c.19C>T	c.(19-21)CAA>TAA	p.Q7*	IL23R_uc009waz.2_5'UTR|IL23R_uc001ddp.2_5'Flank|IL23R_uc010opi.1_5'Flank|IL23R_uc010opj.1_5'Flank|IL23R_uc010opk.1_5'Flank|IL23R_uc010opl.1_5'Flank|IL23R_uc010opm.1_5'Flank|IL23R_uc001ddq.2_5'Flank|IL23R_uc010opn.1_5'Flank|IL23R_uc001ddr.2_5'Flank	NM_144701	NP_653302	Q5VWK5	IL23R_HUMAN	interleukin 23 receptor precursor	7					inflammatory response|negative regulation of interleukin-10 production|positive regulation of defense response to virus by host|positive regulation of interferon-gamma production|positive regulation of interleukin-12 production|positive regulation of memory T cell differentiation|positive regulation of T cell mediated cytotoxicity|positive regulation of T-helper 1 type immune response|positive regulation of T-helper 17 cell lineage commitment|positive regulation of T-helper 17 type immune response|response to interferon-gamma|response to lipopolysaccharide	interleukin-23 receptor complex	receptor activity				0						GGTCACTATTCAATGGGATGC	0.328000													23	157					0	0	1	0	0
DIRAS3	9077	broad.mit.edu	37	1	68512953	68512953	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:68512953C>T	uc001ded.2	-	2	323	c.28G>A	c.(28-30)GAA>AAA	p.E10K	uc001deb.1_Intron|uc001dec.1_Intron	NM_004675	NP_004666	O95661	DIRA3_HUMAN	DIRAS family, GTP-binding RAS-like 3	10					regulation of cyclin-dependent protein kinase activity|regulation of gene expression by genetic imprinting|small GTPase mediated signal transduction	plasma membrane	GTP binding|GTPase activity			skin(1)	1						AGCTTCTGTTCCTTGGAGCCA	0.582000													16	21					0	0	1	0	0
LRRC7	57554	broad.mit.edu	37	1	70541981	70541982	+	Splice_Site	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:70541981_70541982GG>AA	uc001dep.2	+	22	4368	c.4338_splice	c.e22+1	p.Q1446_splice	LRRC7_uc009wbg.2_Splice_Site_p.Q730_splice|LRRC7_uc001deq.2_Splice_Site_p.Q640_splice	NM_020794	NP_065845	Q96NW7	LRRC7_HUMAN	leucine rich repeat containing 7							centrosome|focal adhesion|nucleolus	protein binding			ovary(9)|breast(2)|central_nervous_system(2)|liver(1)	14						ATCCAGAGCAGGTGAGAAGTGT	0.465000													11	48					0	0	1	0	0
C1orf173	127254	broad.mit.edu	37	1	75097441	75097441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:75097441G>A	uc001dgg.2	-	7	994	c.775C>T	c.(775-777)CGT>TGT	p.R259C	C1orf173_uc001dgi.3_Missense_Mutation_p.R53C	NM_001002912	NP_001002912	Q5RHP9	CA173_HUMAN	hypothetical protein LOC127254	259	Poly-Arg.									ovary(3)|upper_aerodigestive_tract(1)|central_nervous_system(1)	5						GTGGTTGGACGAAATCTTCTC	0.363000													38	62					0	0	1	0	0
GIPC2	54810	broad.mit.edu	37	1	78560771	78560771	+	Missense_Mutation	SNP	G	A	A	rs138753471	byFrequency	TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:78560771G>A	uc001dik.2	+	3	752	c.562G>A	c.(562-564)GAG>AAG	p.E188K		NM_017655	NP_060125	Q8TF65	GIPC2_HUMAN	PDZ domain protein GIPC2	188	PDZ.					cytoplasm				ovary(1)	1						ATTAAAAAAGGAGGAACTCTT	0.388000													29	98					0	0	1	0	0
IFI44	10561	broad.mit.edu	37	1	79116061	79116061	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:79116061A>G	uc001dip.3	+	2	305	c.181A>G	c.(181-183)ATT>GTT	p.I61V	IFI44_uc010orr.1_Missense_Mutation_p.I61V|IFI44_uc010ors.1_Intron	NM_006417	NP_006408	Q8TCB0	IFI44_HUMAN	interferon-induced, hepatitis C-associated	61					response to virus	cytoplasm				ovary(1)|central_nervous_system(1)	2						AGATCATATTATTGGAGCATA	0.378000													45	160					0	0	1	0	0
LPHN2	23266	broad.mit.edu	37	1	82456275	82456275	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:82456275A>G	uc001dit.3	+	21	3839	c.3658A>G	c.(3658-3660)AGC>GGC	p.S1220G	LPHN2_uc001dis.2_Missense_Mutation_p.S200G|LPHN2_uc001diu.2_Missense_Mutation_p.S1220G|LPHN2_uc001div.2_3'UTR|LPHN2_uc009wcd.2_3'UTR|LPHN2_uc001diw.2_Missense_Mutation_p.S847G	NM_012302	NP_036434	O95490	LPHN2_HUMAN	latrophilin 2 precursor	1276	Cytoplasmic (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity|latrotoxin receptor activity|sugar binding			ovary(3)|lung(3)|breast(2)|central_nervous_system(1)	9				all cancers(265;0.00142)|Epithelial(280;0.00829)|OV - Ovarian serous cystadenocarcinoma(397;0.077)|STAD - Stomach adenocarcinoma(256;0.248)		ACGGGGCAGCAGCAAGACTCA	0.448000													34	66					0	0	1	0	0
TTLL7	79739	broad.mit.edu	37	1	84356080	84356080	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:84356080G>A	uc001djc.2	-	19	2689	c.2293C>T	c.(2293-2295)CGG>TGG	p.R765W	TTLL7_uc001djb.2_RNA|TTLL7_uc001djd.2_RNA|TTLL7_uc001dje.2_RNA|TTLL7_uc001djf.2_RNA|TTLL7_uc001djg.2_RNA	NM_024686	NP_078962	Q6ZT98	TTLL7_HUMAN	tubulin tyrosine ligase-like family, member 7	765					cell differentiation|nervous system development|protein modification process	cilium|dendrite|microtubule basal body|perikaryon	tubulin-tyrosine ligase activity			ovary(1)	1				all cancers(265;0.0126)|Epithelial(280;0.0372)|OV - Ovarian serous cystadenocarcinoma(397;0.16)		TTGAAAATCCGATATAAATTT	0.408000													26	38					0	0	1	0	0
PKN2	5586	broad.mit.edu	37	1	89150311	89150311	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:89150311G>A	uc001dmn.2	+	1	390	c.48G>A	c.(46-48)CAG>CAA	p.Q16Q	PKN2_uc001dmm.1_Silent_p.Q16Q|PKN2_uc010osp.1_Silent_p.Q16Q|PKN2_uc010osq.1_5'UTR|PKN2_uc009wcv.2_Silent_p.Q16Q	NM_006256	NP_006247	Q16513	PKN2_HUMAN	protein kinase N2	16					signal transduction	cytoplasm	ATP binding|histone deacetylase binding|protein kinase C activity			large_intestine(1)|lung(1)|skin(1)	3		Lung NSC(277;0.123)		all cancers(265;0.0136)|Epithelial(280;0.0301)		CGGAACTGCAGGTAAGGGCCG	0.726000													4	6					0	0	1	0	0
LOC400759	400759	broad.mit.edu	37	1	89889966	89889966	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:89889966C>T	uc009wcy.1	+	5		c.707C>T				NR_003133				Homo sapiens cDNA, FLJ17004.												0						CGACAGGGTCCAGTTGCTGGA	0.453000													48	198					0	0	1	0	0
ALG14	199857	broad.mit.edu	37	1	95538376	95538376	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:95538376G>A	uc001dra.2	-	1	132	c.79C>T	c.(79-81)CGT>TGT	p.R27C		NM_144988	NP_659425	Q96F25	ALG14_HUMAN	asparagine-linked glycosylation 14 homolog	27	Cytoplasmic (Potential).				dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity				0		all_lung(203;0.0232)|Lung NSC(277;0.0739)		all cancers(265;0.0615)|Epithelial(280;0.139)		TCCATGGAACGAAGCACTACC	0.572000													59	98					0	0	1	0	0
LPPR5	163404	broad.mit.edu	37	1	99387499	99387499	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:99387499C>T	uc001dsb.2	-	4	959	c.737G>A	c.(736-738)CGA>CAA	p.R246Q	LPPR5_uc001dsc.2_Missense_Mutation_p.R246Q	NM_001037317	NP_001032394	Q32ZL2	LPPR5_HUMAN	phosphatidic acid phosphatase type 2d isoform 1	246						integral to membrane	hydrolase activity				0						CCAATGATTTCGATATTCTGC	0.363000													46	87					0	0	1	0	0
AGL	178	broad.mit.edu	37	1	100346857	100346857	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:100346857G>A	uc001dsi.1	+	16	2411	c.2011G>A	c.(2011-2013)GTT>ATT	p.V671I	AGL_uc001dsj.1_Missense_Mutation_p.V671I|AGL_uc001dsk.1_Missense_Mutation_p.V671I|AGL_uc001dsl.1_Missense_Mutation_p.V671I|AGL_uc001dsm.1_Missense_Mutation_p.V655I|AGL_uc001dsn.1_Missense_Mutation_p.V654I	NM_000642	NP_000633	P35573	GDE_HUMAN	amylo-1,6-glucosidase,	671	4-alpha-glucanotransferase.				glucose metabolic process|glycogen biosynthetic process|glycogen catabolic process	cytosol|isoamylase complex|nucleus	4-alpha-glucanotransferase activity|amylo-alpha-1,6-glucosidase activity|cation binding			ovary(1)|central_nervous_system(1)|skin(1)	3		all_epithelial(167;2.2e-06)|all_lung(203;0.000295)|Lung NSC(277;0.00131)		Epithelial(280;0.15)|COAD - Colon adenocarcinoma(174;0.151)|Lung(183;0.209)|all cancers(265;0.237)		GATTTCAGTGGTTTCTGAAGA	0.368000													28	104					0	0	1	0	0
S1PR1	1901	broad.mit.edu	37	1	101705249	101705249	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:101705249T>C	uc001dud.2	+	2	1223	c.709T>C	c.(709-711)TTC>CTC	p.F237L	S1PR1_uc009weg.2_Missense_Mutation_p.F237L	NM_001400	NP_001391	P21453	S1PR1_HUMAN	sphingosine-1-phosphate receptor 1	237	Cytoplasmic (By similarity).				cell adhesion	integral to membrane	lysosphingolipid and lysophosphatidic acid receptor activity			ovary(2)|lung(1)	3						CCGCCTGACGTTCCGCAAGAA	0.572000													14	52					0	0	1	0	0
PTPN22	26191	broad.mit.edu	37	1	114372594	114372594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:114372594G>A	uc001eds.2	-	17	2241	c.2111C>T	c.(2110-2112)TCC>TTC	p.S704F	PTPN22_uc009wgq.2_Missense_Mutation_p.S649F|PTPN22_uc010owo.1_Missense_Mutation_p.S460F|PTPN22_uc001edt.2_Intron|PTPN22_uc009wgr.2_Missense_Mutation_p.S704F|PTPN22_uc009wgs.2_Missense_Mutation_p.S577F	NM_015967	NP_057051	Q9Y2R2	PTN22_HUMAN	protein tyrosine phosphatase, non-receptor type	704					negative regulation of T cell activation|negative regulation of T cell receptor signaling pathway|phosphoanandamide dephosphorylation|regulation of B cell receptor signaling pathway|regulation of natural killer cell proliferation|T cell differentiation	internal side of plasma membrane|nucleus|perinuclear region of cytoplasm	kinase binding|protein tyrosine phosphatase activity|SH3 domain binding			kidney(2)|lung(1)|skin(1)	4	Lung SC(450;0.184)	all_cancers(81;1.93e-08)|all_epithelial(167;4.37e-08)|all_lung(203;5.22e-06)|Lung NSC(69;8.94e-06)		Lung(183;0.0234)|Colorectal(144;0.0686)|all cancers(265;0.0792)|Epithelial(280;0.0866)|COAD - Colon adenocarcinoma(174;0.111)|LUSC - Lung squamous cell carcinoma(189;0.133)		AAGAAAGAAGGACTCTAGAGT	0.348000													19	67					0	0	1	0	0
DENND2C	163259	broad.mit.edu	37	1	115079318	115079318	+	RNA	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:115079318G>A	uc001eez.2	-	29		c.4325C>T				NM_198459		Q68D51	DEN2C_HUMAN	DENN/MADD domain containing 2C											skin(3)	3	all_epithelial(7;9.54e-05)|all_lung(7;0.000179)|Lung NSC(6;0.00195)|Lung SC(450;0.211)	all_cancers(81;4.64e-07)|all_epithelial(167;4.2e-07)|all_lung(203;9.97e-06)|Lung NSC(69;1.74e-05)		Lung(183;0.0234)|Colorectal(144;0.0686)|COAD - Colon adenocarcinoma(174;0.111)|all cancers(265;0.112)|Epithelial(280;0.124)|LUSC - Lung squamous cell carcinoma(189;0.133)		GGTCGAGCAGGATGTCGATAT	0.532000													21	82					0	0	1	0	0
HSD3B1	3283	broad.mit.edu	37	1	120056981	120056981	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:120056981C>G	uc001ehv.1	+	4	980	c.835C>G	c.(835-837)CGC>GGC	p.R279G	HSD3B1_uc001ehw.2_Missense_Mutation_p.R281G	NM_000862	NP_000853	P14060	3BHS1_HUMAN	3 beta-hydroxysteroid dehydrogenase 1	279					androgen biosynthetic process|estrogen biosynthetic process|glucocorticoid biosynthetic process|mineralocorticoid biosynthetic process	integral to membrane|microsome|mitochondrial inner membrane|mitochondrial intermembrane space|smooth endoplasmic reticulum membrane	3-beta-hydroxy-delta5-steroid dehydrogenase activity|binding|steroid delta-isomerase activity			ovary(2)	2	all_neural(166;0.219)	all_lung(203;3.16e-06)|Lung NSC(69;2.19e-05)|all_epithelial(167;0.000624)		Lung(183;0.0106)|LUSC - Lung squamous cell carcinoma(189;0.0554)	NADH(DB00157)|Trilostane(DB01108)	GTTCGGCCTCCGCCTTGATTC	0.478000													32	112					0	0	1	0	0
HFE2	148738	broad.mit.edu	37	1	145416592	145416592	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:145416592G>A	uc001eni.2	+	4	1262	c.937G>A	c.(937-939)GAC>AAC	p.D313N	NBPF10_uc001emp.3_Intron|HFE2_uc001enj.2_Missense_Mutation_p.D87N|HFE2_uc001enk.2_Missense_Mutation_p.D200N|HFE2_uc001enl.2_Missense_Mutation_p.D87N	NM_213653	NP_998818	Q6ZVN8	RGMC_HUMAN	hemojuvelin isoform a precursor	313					axon guidance	anchored to membrane				ovary(1)	1	all_hematologic(18;0.0187)|Acute lymphoblastic leukemia(18;0.0786)					AGCTGAACAGGACCTGCAGCT	0.552000													30	124					0	0	1	0	0
LOC645166	645166	broad.mit.edu	37	1	148932812	148932812	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:148932812C>T	uc010pbc.1	+	2		c.127C>T			LOC645166_uc010pbd.1_RNA|LOC645166_uc009wkw.1_RNA	NR_027355				Homo sapiens cDNA, FLJ18771.												0						CCAAGCTAGCCCGCCAGGCCT	0.602000													11	278					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128049	152128049	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:152128049G>A	uc001ezs.1	-	3	1591	c.1526C>T	c.(1525-1527)TCC>TTC	p.S509F		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	509	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						ACCATAGTGGGAACTTTGGCC	0.502000													141	655					0	0	1	0	0
RPTN	126638	broad.mit.edu	37	1	152128532	152128532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:152128532C>T	uc001ezs.1	-	3	1108	c.1043G>A	c.(1042-1044)AGA>AAA	p.R348K		NM_001122965	NP_001116437	Q6XPR3	RPTN_HUMAN	repetin	348	Gln-rich.					proteinaceous extracellular matrix	calcium ion binding				0						CTGGCCTTTTCTGTCCATTTG	0.493000													164	677					0	0	1	0	0
HRNR	388697	broad.mit.edu	37	1	152188067	152188067	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:152188067G>A	uc001ezt.1	-	3	6114	c.6038C>T	c.(6037-6039)TCC>TTC	p.S2013F		NM_001009931	NP_001009931	Q86YZ3	HORN_HUMAN	hornerin	2013	22.				keratinization		calcium ion binding|protein binding			skin(2)|ovary(1)	3	Hepatocellular(266;0.0877)|Melanoma(130;0.116)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.206)			ATGGGTAGAGGAATGACCTGA	0.557000													23	528					0	0	1	0	0
PGLYRP4	57115	broad.mit.edu	37	1	153303356	153303356	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:153303356C>T	uc001fbo.2	-	9	1074	c.1009G>A	c.(1009-1011)GGG>AGG	p.G337R	PGLYRP4_uc001fbp.2_Missense_Mutation_p.G333R	NM_020393	NP_065126	Q96LB8	PGRP4_HUMAN	peptidoglycan recognition protein-I-beta	337					defense response to Gram-positive bacterium|detection of bacterium|innate immune response|peptidoglycan catabolic process	extracellular region|intracellular|membrane	N-acetylmuramoyl-L-alanine amidase activity|peptidoglycan receptor activity|zinc ion binding			ovary(3)|skin(1)	4	all_lung(78;2.81e-33)|Lung NSC(65;9.54e-32)|Hepatocellular(266;0.0877)|all_hematologic(923;0.127)		LUSC - Lung squamous cell carcinoma(543;0.171)			GTCAGGTACCCTTTGACCATG	0.547000													22	103					0	0	1	0	0
S100A7L2	645922	broad.mit.edu	37	1	153409576	153409576	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:153409576C>T	uc010pdx.1	-	3	375	c.297G>A	c.(295-297)AAG>AAA	p.K99K		NM_001045479	NP_001038944			S100 calcium binding protein A7-like 2											ovary(1)	1	all_lung(78;2.4e-33)|Lung NSC(65;8.13e-32)|Hepatocellular(266;0.0877)|Melanoma(130;0.199)		LUSC - Lung squamous cell carcinoma(543;0.171)			CATGCATTATCTTGTGGTGGT	0.478000													44	151					0	0	1	0	0
OR10X1	128367	broad.mit.edu	37	1	158549156	158549156	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:158549156C>T	uc010pin.1	-	1	534	c.534G>A	c.(532-534)CTG>CTA	p.L178L		NM_001004477	NP_001004477	Q8NGY0	O10X1_HUMAN	olfactory receptor, family 10, subfamily X,	178	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1	all_hematologic(112;0.0378)					CCCTGAATATCAGTGCAGTCT	0.448000													10	45					0	0	1	0	0
MNDA	4332	broad.mit.edu	37	1	158812179	158812179	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:158812179T>C	uc001fsz.1	+	2	436	c.236T>C	c.(235-237)GTT>GCT	p.V79A		NM_002432	NP_002423	P41218	MNDA_HUMAN	myeloid cell nuclear differentiation antigen	79	DAPIN.				B cell receptor signaling pathway|cellular defense response|negative regulation of B cell proliferation|positive regulation of apoptosis|regulation of transcription, DNA-dependent|response to DNA damage stimulus|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding			ovary(2)|skin(2)	4	all_hematologic(112;0.0378)					AAAAACCTTGTTAACAATCTT	0.388000													46	75					0	0	1	0	0
ATP1A2	477	broad.mit.edu	37	1	160093081	160093081	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:160093081G>A	uc001fvc.2	+	4	388	c.256G>A	c.(256-258)GAG>AAG	p.E86K	ATP1A2_uc001fvb.2_Missense_Mutation_p.E86K|ATP1A2_uc010piz.1_5'Flank	NM_000702	NP_000693	P50993	AT1A2_HUMAN	Na+/K+ -ATPase alpha 2 subunit proprotein	86	Helical; (Potential).				ATP biosynthetic process		ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			central_nervous_system(3)|ovary(2)|skin(2)	7	all_cancers(52;1.11e-16)|all_hematologic(112;0.093)		BRCA - Breast invasive adenocarcinoma(70;0.111)|LUSC - Lung squamous cell carcinoma(543;0.246)			CACAACCCCTGAGTGGGTCAA	0.627000													143	200					0	0	1	0	0
OLFML2B	25903	broad.mit.edu	37	1	161987270	161987270	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:161987270C>T	uc001gbu.2	-	3	890	c.466G>A	c.(466-468)GGA>AGA	p.G156R	OLFML2B_uc010pkq.1_Missense_Mutation_p.G156R	NM_015441	NP_056256	Q68BL8	OLM2B_HUMAN	olfactomedin-like 2B precursor	156										skin(1)	1	all_hematologic(112;0.156)		BRCA - Breast invasive adenocarcinoma(70;0.0172)			TAGAACGCTCCTTCCAACATG	0.507000													33	119					0	0	1	0	0
NUF2	83540	broad.mit.edu	37	1	163317606	163317606	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:163317606G>A	uc001gcq.1	+	12	1302	c.1002G>A	c.(1000-1002)TTG>TTA	p.L334L	NUF2_uc001gcr.1_Silent_p.L334L|NUF2_uc009wvc.1_Silent_p.L287L	NM_145697	NP_663735	Q9BZD4	NUF2_HUMAN	NUF2, NDC80 kinetochore complex component	334	Interaction with the N-terminus of NDC80.|Potential.				cell division|chromosome segregation|mitotic prometaphase	condensed chromosome kinetochore|cytosol|Ndc80 complex|nucleus	protein binding			ovary(3)|skin(1)	4	all_hematologic(923;0.101)					TGAAGAAATTGAAGACTGAAG	0.333000													18	26					0	0	1	0	0
DUSP27	92235	broad.mit.edu	37	1	167097730	167097730	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:167097730G>A	uc001geb.1	+	5	3362	c.3362G>A	c.(3361-3363)CGG>CAG	p.R1121Q		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	1121					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						TCCCAGTATCGGAGAAGCACT	0.512000													10	35					0	0	1	0	0
KIFAP3	22920	broad.mit.edu	37	1	169985727	169985727	+	Silent	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:169985727T>G	uc001ggv.2	-	10	1330	c.1059A>C	c.(1057-1059)ATA>ATC	p.I353I	KIFAP3_uc010plx.1_Silent_p.I55I	NM_014970	NP_055785	Q92845	KIFA3_HUMAN	kinesin-associated protein 3	353	ARM 1.				blood coagulation|plus-end-directed vesicle transport along microtubule|protein complex assembly|signal transduction	centrosome|condensed nuclear chromosome|cytosol|endoplasmic reticulum|kinesin II complex|spindle microtubule	kinesin binding			skin(1)	1	all_hematologic(923;0.0922)|Acute lymphoblastic leukemia(37;0.181)					GCTCACAAGGTATCATTTTCA	0.358000													20	107					0	0	1	0	0
SLC9A11	284525	broad.mit.edu	37	1	173478778	173478778	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:173478778C>T	uc001giz.2	-	24	3391	c.2968G>A	c.(2968-2970)GAA>AAA	p.E990K	SLC9A11_uc009wwe.2_Missense_Mutation_p.E548K	NM_178527	NP_848622	Q5TAH2	S9A11_HUMAN	solute carrier family 9, member 11	990	cNMP.				sodium ion transport	integral to membrane	ion channel activity|solute:hydrogen antiporter activity			ovary(2)	2						ATTTTATATTCCAGAGATGGC	0.378000													12	15					0	0	1	0	0
ASTN1	460	broad.mit.edu	37	1	177133676	177133676	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:177133676G>A	uc001glc.2	-	1	349	c.137C>T	c.(136-138)CCC>CTC	p.P46L	ASTN1_uc001glb.1_Missense_Mutation_p.P46L|ASTN1_uc001gld.1_Missense_Mutation_p.P46L|ASTN1_uc009wwx.1_Missense_Mutation_p.P46L	NM_004319	NP_004310	O14525	ASTN1_HUMAN	astrotactin isoform 1	46					cell migration|neuron cell-cell adhesion	integral to membrane				ovary(6)|skin(5)|central_nervous_system(2)|large_intestine(1)|lung(1)	15						GCGCAGGAAGGGCAGTGCCGA	0.662000													24	46					0	0	1	0	0
FAM5B	57795	broad.mit.edu	37	1	177247747	177247747	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:177247747A>G	uc001glf.2	+	7	1373	c.1061A>G	c.(1060-1062)AAC>AGC	p.N354S	FAM5B_uc010pna.1_Missense_Mutation_p.N104S|FAM5B_uc001glg.2_Missense_Mutation_p.N249S	NM_021165	NP_066988	Q9C0B6	FAM5B_HUMAN	family with sequence similarity 5, member B	354						extracellular region				skin(3)|ovary(2)|upper_aerodigestive_tract(1)	6						CGGTTCCTGAACTCCACAGCT	0.557000													61	340					0	0	1	0	0
TOR1AIP1	26092	broad.mit.edu	37	1	179887340	179887340	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:179887340C>T	uc001gnq.2	+	10	1936	c.1718C>T	c.(1717-1719)CCT>CTT	p.P573L		NM_015602	NP_056417	Q5JTV8	TOIP1_HUMAN	lamina-associated polypeptide 1B	573	Lumenal (Potential).					integral to membrane|nuclear inner membrane				breast(1)|central_nervous_system(1)	2						CCTGTGCAACCTGAAAATGCC	0.433000													27	38					0	0	1	0	0
FAM129A	116496	broad.mit.edu	37	1	184765094	184765094	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:184765094A>C	uc001gra.2	-	14	1998	c.1804T>G	c.(1804-1806)TCT>GCT	p.S602A	FAM129A_uc001grb.1_Missense_Mutation_p.S365A	NM_052966	NP_443198	Q9BZQ8	NIBAN_HUMAN	niban protein isoform 2	602					negative regulation of protein phosphorylation|positive regulation of protein phosphorylation|positive regulation of translation|response to endoplasmic reticulum stress	cytoplasm|nucleus|plasma membrane				ovary(3)|skin(1)	4						AGAATGGCAGAAGCTCTCCTG	0.537000													42	82					0	0	1	0	0
C1orf26	54823	broad.mit.edu	37	1	185240483	185240483	+	Missense_Mutation	SNP	G	A	A	rs77632908		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:185240483G>A	uc001grg.3	+	17	2584	c.2470G>A	c.(2470-2472)GAT>AAT	p.D824N	C1orf26_uc001grh.3_Missense_Mutation_p.D824N	NM_001105518	NP_001098988	Q5T5J6	SWT1_HUMAN	hypothetical protein LOC54823	824											0						TAATTATCAAGATGTTGAGAC	0.279000													14	43					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201195016	201195016	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:201195016G>A	uc001gwc.2	+	11	2803	c.2031G>A	c.(2029-2031)GAG>GAA	p.E677E	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						TGACGGCCGAGTGGGAACCCT	0.687000													9	37					0	0	1	0	0
IGFN1	91156	broad.mit.edu	37	1	201195046	201195046	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:201195046T>A	uc001gwc.2	+	11	2833	c.2061T>A	c.(2059-2061)GAT>GAA	p.D687E	IGFN1_uc001gwb.2_RNA	NM_178275	NP_840059			RecName: Full=Immunoglobulin-like and fibronectin type III domain-containing protein 1; AltName: Full=EEF1A2-binding protein 1; AltName: Full=KY-interacting protein 1;											ovary(2)|pancreas(1)	3						AGGCCCAGGATGTCCCGCTGC	0.682000													9	30					0	0	1	0	0
KDM5B	10765	broad.mit.edu	37	1	202701030	202701030	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:202701030G>A	uc001gyf.2	-	24	4063	c.3947C>T	c.(3946-3948)CCT>CTT	p.P1316L	KDM5B_uc009xag.2_Missense_Mutation_p.P1352L|KDM5B_uc001gyg.1_Missense_Mutation_p.P1158L	NM_006618	NP_006609	Q9UGL1	KDM5B_HUMAN	jumonji, AT rich interactive domain 1B	1316					negative regulation of transcription, DNA-dependent	nucleolus	DNA binding|histone demethylase activity (H3-dimethyl-K4 specific)|histone demethylase activity (H3-trimethyl-K4 specific)|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|protein binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity|zinc ion binding			ovary(2)|breast(2)|urinary_tract(1)	5						CCAGTCATCAGGCAAAGAAAA	0.408000													18	83					0	0	1	0	0
C4BPB	725	broad.mit.edu	37	1	207263705	207263705	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:207263705G>T	uc001hfj.2	+	3	241	c.111G>T	c.(109-111)AAG>AAT	p.K37N	C4BPB_uc001hfi.2_Missense_Mutation_p.K36N|C4BPB_uc001hfk.2_Missense_Mutation_p.K36N|C4BPB_uc001hfl.2_Missense_Mutation_p.K37N|C4BPB_uc009xcd.2_Missense_Mutation_p.K27N|C4BPB_uc001hfm.2_Missense_Mutation_p.K37N|C4BPB_uc010pse.1_Missense_Mutation_p.K27N	NM_001017365	NP_001017365	P20851	C4BPB_HUMAN	complement component 4 binding protein, beta	37	Sushi 1.				blood coagulation|complement activation, classical pathway|innate immune response	extracellular region				ovary(1)	1						TTGTCGCAAAGGAGGTGGAAG	0.458000													16	55					6.31663e-08	6.44251e-08	1	1	0
RPS6KC1	26750	broad.mit.edu	37	1	213341213	213341213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:213341213C>T	uc010ptr.1	+	7	1007	c.848C>T	c.(847-849)CCT>CTT	p.P283L	RPS6KC1_uc001hkd.2_Missense_Mutation_p.P271L|RPS6KC1_uc010pts.1_Missense_Mutation_p.P102L|RPS6KC1_uc010ptt.1_Missense_Mutation_p.P102L|RPS6KC1_uc010ptu.1_Missense_Mutation_p.P102L|RPS6KC1_uc010ptv.1_5'UTR|RPS6KC1_uc001hke.2_Missense_Mutation_p.P102L	NM_012424	NP_036556	Q96S38	KS6C1_HUMAN	ribosomal protein S6 kinase, 52kDa, polypeptide	283	MIT.				cell communication|signal transduction	early endosome|membrane	ATP binding|phosphatidylinositol binding|protein binding|protein serine/threonine kinase activity			lung(4)|ovary(3)|breast(1)	8				OV - Ovarian serous cystadenocarcinoma(81;0.00705)|all cancers(67;0.016)|GBM - Glioblastoma multiforme(131;0.0663)|Epithelial(68;0.145)		GAGTCAAGCCCTACCCGTCGA	0.408000													16	30					0	0	1	0	0
CENPF	1063	broad.mit.edu	37	1	214787141	214787141	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:214787141G>A	uc001hkm.2	+	2	218	c.44G>A	c.(43-45)AGA>AAA	p.R15K		NM_016343	NP_057427	P49454	CENPF_HUMAN	centromere protein F	15	Interaction with SNAP25 and required for localization to the cytoplasm (By similarity).|Potential.				cell differentiation|cell division|cell proliferation|DNA replication|G2 phase of mitotic cell cycle|kinetochore assembly|metaphase plate congression|mitotic cell cycle spindle assembly checkpoint|mitotic prometaphase|muscle organ development|negative regulation of transcription, DNA-dependent|protein transport|regulation of G2/M transition of mitotic cell cycle|regulation of striated muscle tissue development|response to drug	condensed chromosome outer kinetochore|cytosol|midbody|nuclear envelope|nuclear matrix|perinuclear region of cytoplasm|spindle pole	chromatin binding|dynein binding|protein C-terminus binding|protein homodimerization activity|transcription factor binding			ovary(6)|central_nervous_system(4)|large_intestine(2)|skin(1)	13				all cancers(67;0.00836)|OV - Ovarian serous cystadenocarcinoma(81;0.00855)|GBM - Glioblastoma multiforme(131;0.0694)|Epithelial(68;0.0833)		CTGCCTACAAGAGCTCTTCAG	0.423000													20	43					0	0	1	0	0
SPATA17	128153	broad.mit.edu	37	1	217915408	217915408	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:217915408C>T	uc001hlh.1	+	6	513	c.487C>T	c.(487-489)CGA>TGA	p.R163*	SPATA17_uc009xdr.1_RNA|SPATA17_uc001hli.2_Nonsense_Mutation_p.R163*	NM_138796	NP_620151	Q96L03	SPT17_HUMAN	spermatogenesis associated 17	163						cytoplasm	calmodulin binding			pancreas(1)	1				OV - Ovarian serous cystadenocarcinoma(81;0.0516)|all cancers(67;0.0891)|GBM - Glioblastoma multiforme(131;0.117)		TTACCAAGCCCGAAAGATGCA	0.473000													17	83					0	0	1	0	0
CAPN9	10753	broad.mit.edu	37	1	230903339	230903339	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:230903339G>A	uc001htz.1	+	5	702	c.589G>A	c.(589-591)GAA>AAA	p.E197K	CAPN9_uc009xfg.1_Missense_Mutation_p.E134K|CAPN9_uc001hua.1_Missense_Mutation_p.E197K	NM_006615	NP_006606	O14815	CAN9_HUMAN	calpain 9 isoform 1	197	Calpain catalytic.				digestion|proteolysis	intracellular	calcium ion binding|calcium-dependent cysteine-type endopeptidase activity			ovary(1)	1	Breast(184;0.0871)|Ovarian(103;0.183)	Prostate(94;0.167)				CGAGGCCATGGAAGACTTCAC	0.552000													16	68					0	0	1	0	0
KCNK1	3775	broad.mit.edu	37	1	233802413	233802413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:233802413C>T	uc010pxo.1	+	2	596	c.428C>T	c.(427-429)CCC>CTC	p.P143L	KCNK1_uc001hvw.2_RNA|KCNK1_uc001hvx.2_RNA	NM_002245	NP_002236	O00180	KCNK1_HUMAN	potassium channel, subfamily K, member 1	143	Helical; (Potential).					voltage-gated potassium channel complex	inward rectifier potassium channel activity			central_nervous_system(1)	1		all_cancers(173;0.00217)|all_epithelial(177;0.121)|Prostate(94;0.122)|Acute lymphoblastic leukemia(190;0.175)			Ibutilide(DB00308)|Quinidine(DB00908)	ATTGGCATTCCCTTCACCCTC	0.592000													16	64					0	0	1	0	0
LYST	1130	broad.mit.edu	37	1	235956850	235956850	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:235956850C>T	uc001hxj.2	-	11	4244	c.4069G>A	c.(4069-4071)GAG>AAG	p.E1357K	LYST_uc009xgb.1_RNA|LYST_uc010pxs.1_RNA|LYST_uc001hxl.1_Missense_Mutation_p.E1357K	NM_000081	NP_000072	Q99698	LYST_HUMAN	lysosomal trafficking regulator	1357					defense response to bacterium|defense response to protozoan|defense response to virus|endosome to lysosome transport via multivesicular body sorting pathway|leukocyte chemotaxis|mast cell secretory granule organization|melanosome organization|natural killer cell mediated cytotoxicity|protein transport	cytoplasm|microtubule cytoskeleton	protein binding			ovary(6)|breast(4)|central_nervous_system(2)	12	Ovarian(103;0.0634)|Breast(184;0.23)	all_cancers(173;0.00246)|Prostate(94;0.0771)|Acute lymphoblastic leukemia(190;0.228)	OV - Ovarian serous cystadenocarcinoma(106;0.000674)			AGGGTTAGCTCTTCTGAACAT	0.313000									Chediak-Higashi_syndrome				19	96					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237580394	237580394	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:237580394C>T	uc001hyl.1	+	11	939	c.819C>T	c.(817-819)TCC>TCT	p.S273S		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	273	Cytoplasmic (By similarity).|MIR 3.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			ATGCACGTTCCCTTTGGAGAC	0.418000													11	53					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237777588	237777588	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:237777588G>A	uc001hyl.1	+	37	5280	c.5160G>A	c.(5158-5160)ATG>ATA	p.M1720I		NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	1720	Cytoplasmic (By similarity).|4 X approximate repeats.				cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CCAGGCTCATGATGAACAACG	0.522000													13	23					0	0	1	0	0
RYR2	6262	broad.mit.edu	37	1	237872838	237872838	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:237872838G>T	uc001hyl.1	+	70	10321	c.10201G>T	c.(10201-10203)GAA>TAA	p.E3401*	RYR2_uc010pxz.1_Nonsense_Mutation_p.E356*	NM_001035	NP_001026	Q92736	RYR2_HUMAN	cardiac muscle ryanodine receptor	3401					cardiac muscle contraction|detection of calcium ion|induction of apoptosis by ionic changes|regulation of cardiac muscle contraction by regulation of the release of sequestered calcium ion|release of sequestered calcium ion into cytosol by sarcoplasmic reticulum|response to caffeine|response to hypoxia|response to redox state	calcium channel complex|cytosol|plasma membrane|plasma membrane enriched fraction|sarcoplasmic reticulum membrane	calcium ion binding|calmodulin binding|identical protein binding|protein kinase A catalytic subunit binding|protein kinase A regulatory subunit binding|receptor activity|ryanodine-sensitive calcium-release channel activity|suramin binding			ovary(17)|large_intestine(6)|central_nervous_system(6)|pancreas(3)|breast(1)	33	Ovarian(103;0.103)	all_cancers(173;0.000368)|Melanoma(53;0.0179)|all_epithelial(177;0.0225)	OV - Ovarian serous cystadenocarcinoma(106;0.00606)			CATGGTGGCTGAAGTGTTTAT	0.458000													3	31					0.014758	0.0148091	1	1	0
CHRM3	1131	broad.mit.edu	37	1	240071290	240071290	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:240071290G>A	uc001hyp.2	+	5	1318	c.539G>A	c.(538-540)CGA>CAA	p.R180Q		NM_000740	NP_000731	P20309	ACM3_HUMAN	cholinergic receptor, muscarinic 3	180	Cytoplasmic (By similarity).				cell proliferation|energy reserve metabolic process|nervous system development|protein modification process|regulation of insulin secretion	basolateral plasma membrane|cell junction|integral to plasma membrane|postsynaptic membrane	muscarinic acetylcholine receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(1)	5	Ovarian(103;0.127)	all_cancers(173;0.00567)|all_neural(198;0.203)	OV - Ovarian serous cystadenocarcinoma(106;0.00989)		Anisotropine Methylbromide(DB00517)|Atropine(DB00572)|Benzquinamide(DB00767)|Cevimeline(DB00185)|Cryptenamine(DB00785)|Cyclizine(DB01176)|Darifenacin(DB00496)|Diphemanil Methylsulfate(DB00729)|Diphenidol(DB01231)|Homatropine Methylbromide(DB00725)|Methotrimeprazine(DB01403)|Metixene(DB00340)|Olanzapine(DB00334)|Oxybutynin(DB01062)|Oxyphencyclimine(DB00383)|Promazine(DB00420)|Promethazine(DB01069)|Propiomazine(DB00777)|Solifenacin(DB01591)|Thiethylperazine(DB00372)|Tiotropium(DB01409)|Tolterodine(DB01036)|Tridihexethyl(DB00505)	CGAGCCAAACGAACAACAAAG	0.488000													59	126					0	0	1	0	0
NLRP3	114548	broad.mit.edu	37	1	247587645	247587645	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:247587645C>T	uc001icr.2	+	5	1038	c.900C>T	c.(898-900)CTC>CTT	p.L300L	NLRP3_uc001ics.2_Silent_p.L300L|NLRP3_uc001icu.2_Silent_p.L300L|NLRP3_uc001icw.2_Silent_p.L300L|NLRP3_uc001icv.2_Silent_p.L300L|NLRP3_uc010pyw.1_Silent_p.L298L|NLRP3_uc001ict.1_Silent_p.L298L	NM_001079821	NP_001073289	Q96P20	NALP3_HUMAN	NLR family, pyrin domain containing 3 isoform a	300	NACHT.				detection of biotic stimulus|induction of apoptosis|inflammatory response|negative regulation of NF-kappaB import into nucleus|negative regulation of NF-kappaB transcription factor activity|positive regulation of interleukin-1 beta secretion|protein oligomerization|signal transduction	cytoplasm	ATP binding|peptidoglycan binding|protein binding			lung(8)|skin(8)|ovary(7)|upper_aerodigestive_tract(1)|breast(1)|pancreas(1)	26	all_cancers(71;9.66e-05)|all_epithelial(71;1.85e-05)|Breast(184;0.0226)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0172)	OV - Ovarian serous cystadenocarcinoma(106;0.0141)			TCCTCTTCCTCATGGACGGCT	0.582000													17	90					0	0	1	0	0
OR2C3	81472	broad.mit.edu	37	1	247695227	247695227	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:247695227T>A	uc009xgy.2	-	2	949	c.587A>T	c.(586-588)AAT>ATT	p.N196I	C1orf150_uc009xgw.2_Intron|C1orf150_uc001ida.3_Intron|C1orf150_uc001idb.3_Intron|C1orf150_uc009xgx.2_Intron|LOC148824_uc001idd.2_5'Flank	NM_198074	NP_932340	Q8N628	OR2C3_HUMAN	olfactory receptor, family 2, subfamily C,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(71;4.51e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)	all_cancers(173;0.0242)	OV - Ovarian serous cystadenocarcinoma(106;0.0241)			CTCCATCTCATTGAGGCTGGT	0.537000													9	54					0	0	1	0	0
OR6F1	343169	broad.mit.edu	37	1	247875199	247875200	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:247875199_247875200GG>AA	uc001idj.1	-	1	858_859	c.858_859CC>TT	c.(856-861)AACCCC>AATTCC	p.P287S		NM_001005286	NP_001005286	Q8NGZ6	OR6F1_HUMAN	olfactory receptor, family 6, subfamily F,	287	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0	all_cancers(71;3.24e-05)|all_epithelial(71;1.3e-05)|Breast(184;0.0149)|Ovarian(71;0.0377)|all_lung(81;0.0662)|Lung NSC(105;0.0724)		OV - Ovarian serous cystadenocarcinoma(106;0.0168)			TAGATGAAGGGGTTTAAAACTG	0.441000													54	100					0	0	1	0	0
TRIM58	25893	broad.mit.edu	37	1	248039441	248039441	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:248039441G>A	uc001ido.2	+	6	1159	c.1111G>A	c.(1111-1113)GGG>AGG	p.G371R	OR2W3_uc001idp.1_Intron	NM_015431	NP_056246	Q8NG06	TRI58_HUMAN	tripartite motif-containing 58	371	B30.2/SPRY.					intracellular	zinc ion binding			skin(3)|ovary(1)|pancreas(1)|lung(1)|central_nervous_system(1)	7	all_cancers(71;0.000139)|all_epithelial(71;1.58e-05)|Breast(184;0.0117)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)	all_cancers(173;0.0286)	OV - Ovarian serous cystadenocarcinoma(106;0.0319)			GCCAAGAAAGGGGGAAACCAC	0.557000													38	77					0	0	1	0	0
OR2T2	401992	broad.mit.edu	37	1	248616394	248616394	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:248616394C>T	uc001iek.1	+	1	296	c.296C>T	c.(295-297)GCA>GTA	p.A99V		NM_001004136	NP_001004136	Q6IF00	OR2T2_HUMAN	olfactory receptor, family 2, subfamily T,	99	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(1)	1	all_cancers(71;0.000108)|all_epithelial(71;1.03e-05)|Breast(184;0.00909)|Ovarian(71;0.0377)|all_lung(81;0.127)|Lung NSC(105;0.136)		OV - Ovarian serous cystadenocarcinoma(106;0.0265)			CTGGGCTGTGCAGTTCAGATC	0.532000													74	293					0	0	1	0	0
OR14I1	401994	broad.mit.edu	37	1	248845050	248845050	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:248845050C>T	uc001ieu.1	-	1	556	c.556G>A	c.(556-558)GTT>ATT	p.V186I		NM_001004734	NP_001004734	A6ND48	O14I1_HUMAN	olfactory receptor, family 14, subfamily I,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						TCACAGGAAACCAGGGCCAAC	0.493000													21	30					0	0	1	0	0
ADARB2	105	broad.mit.edu	37	10	1405832	1405832	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:1405832G>A	uc009xhq.2	-	3	842	c.468C>T	c.(466-468)TTC>TTT	p.F156F		NM_018702	NP_061172	Q9NS39	RED2_HUMAN	adenosine deaminase, RNA-specific, B2	156	DRBM 1.				mRNA processing	mitochondrion|nucleus	adenosine deaminase activity|double-stranded RNA binding|metal ion binding|single-stranded RNA binding			large_intestine(2)|central_nervous_system(1)	3		all_epithelial(10;0.059)|Colorectal(49;0.0815)		all cancers(11;0.0224)|GBM - Glioblastoma multiforme(2;0.0414)|Epithelial(11;0.165)		CCGCTACCGCGAAGACCGGGG	0.692000													9	27					0	0	1	0	0
HSPA14	51182	broad.mit.edu	37	10	14891774	14891774	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:14891774C>T	uc001inf.2	+	6	572	c.431C>T	c.(430-432)CCG>CTG	p.P144L	HSPA14_uc010qbw.1_Missense_Mutation_p.P144L	NM_016299	NP_057383	Q0VDF9	HSP7E_HUMAN	heat shock 70kDa protein 14 isoform 1	144					'de novo' cotranslational protein folding	cytosol	ATP binding|protein binding			ovary(2)|breast(2)|lung(1)	5						ATTACTGTCCCGTTTGATTTT	0.323000													31	33					0	0	1	0	0
ACBD7	414149	broad.mit.edu	37	10	15060109	15060109	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:15060109C>T	uc010qby.1	-	5	332	c.23G>A	c.(22-24)GGG>GAG	p.G8E				Q8N6N7	ACBD7_HUMAN	SubName: Full=cDNA FLJ52263, highly similar to Artemis protein (EC 3.1.-.-);	Error:Variant_position_missing_in_Q8N6N7_after_alignment							fatty-acyl-CoA binding				0						ATCTGAAGTCCCCTGTGTACA	0.398000													51	50					0	0	1	0	0
ARMC3	219681	broad.mit.edu	37	10	23326294	23326295	+	Missense_Mutation	DNP	GG	TA	TA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:23326294_23326295GG>TA	uc001irm.3	+	19	2588_2589	c.2505_2506GG>TA	c.(2503-2508)AAGGGA>AATAGA	p.835_836KG>NR	ARMC3_uc010qcv.1_Missense_Mutation_p.828_829KG>NR|ARMC3_uc010qcw.1_Missense_Mutation_p.572_573KG>NR	NM_173081	NP_775104	Q5W041	ARMC3_HUMAN	armadillo repeat containing 3	835_836							binding				0						ACTCTCGGAAGGGAGTGATTGG	0.525000													38	54					0	0	1	0	0
SYNPO2L	79933	broad.mit.edu	37	10	75406708	75406708	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:75406708G>A	uc001jut.3	-	4	2854	c.2702C>T	c.(2701-2703)CCC>CTC	p.P901L	SYNPO2L_uc001jus.3_Missense_Mutation_p.P677L	NM_001114133	NP_001107605	Q9H987	SYP2L_HUMAN	synaptopodin 2-like isoform a	901	Pro-rich.					cytoplasm|cytoskeleton	actin binding			ovary(1)	1	Prostate(51;0.0112)					GGGAGCCAGGGGTTCTGCAGT	0.652000													24	32					0	0	1	0	0
RGR	5995	broad.mit.edu	37	10	86017686	86017686	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:86017686G>A	uc001kdc.1	+	6	706	c.668G>A	c.(667-669)GGC>GAC	p.G223D	RGR_uc001kdd.1_Missense_Mutation_p.G227D|RGR_uc001kde.1_Intron	NM_001012720	NP_001012738	P47804	RGR_HUMAN	retinal G-protein coupled receptor isoform 2	223	Helical; Name=6; (Potential).				phototransduction|protein-chromophore linkage|visual perception	integral to plasma membrane	G-protein coupled receptor activity|photoreceptor activity|protein binding			ovary(1)	1						CTGCTGCTCGGCTGGGGCCCC	0.547000													33	36					0	0	1	0	0
FAS	355	broad.mit.edu	37	10	90767594	90767594	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:90767594G>A	uc001kfr.2	+	3	680	c.334G>A	c.(334-336)GGC>AGC	p.G112S	FAS_uc010qna.1_RNA|FAS_uc001kfs.2_Missense_Mutation_p.G112S|FAS_uc001kft.2_Missense_Mutation_p.G112S|FAS_uc010qnb.1_RNA|FAS_uc010qnc.1_RNA|FAS_uc001kfw.2_Missense_Mutation_p.D112N|FAS_uc010qnd.1_Intron|FAS_uc010qne.1_Intron|FAS_uc009xtp.2_RNA	NM_000043	NP_000034	P25445	TNR6_HUMAN	tumor necrosis factor receptor superfamily,	112	Extracellular (Potential).|TNFR-Cys 2.				activation of caspase activity|activation of pro-apoptotic gene products|anti-apoptosis|cellular response to mechanical stimulus|positive regulation of necrotic cell death	cytosol|extracellular region|integral to membrane|soluble fraction	identical protein binding|kinase binding			upper_aerodigestive_tract(1)|breast(1)	2		Colorectal(252;0.0161)		Colorectal(12;0.000136)|COAD - Colon adenocarcinoma(12;0.000193)		TGAAGGACATGGTAAGAGTCT	0.413000									Autoimmune_Lymphoproliferative_syndrome_type_I				47	51					0	0	1	0	0
KIF20B	9585	broad.mit.edu	37	10	91528083	91528083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:91528083C>T	uc001kgs.1	+	30	5098	c.5026C>T	c.(5026-5028)CCC>TCC	p.P1676S	KIF20B_uc001kgr.1_Missense_Mutation_p.P1636S|KIF20B_uc001kgt.1_Missense_Mutation_p.P887S|KIF20B_uc009xtw.1_RNA	NM_016195	NP_057279	Q96Q89	KI20B_HUMAN	M-phase phosphoprotein 1	1676	Interaction with PIN1.				cell cycle arrest|cell division|microtubule-based movement|mitosis|regulation of mitosis	centrosome|microtubule|nucleolus|nucleoplasm|spindle	ATP binding|ATPase activity|microtubule motor activity|WW domain binding			ovary(1)|pancreas(1)|skin(1)	3						GAATGCTACACCCAGAACTAA	0.284000													20	29					0	0	1	0	0
SORBS1	10580	broad.mit.edu	37	10	97081768	97081768	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:97081768G>A	uc001kkp.2	-	29	3695	c.3650C>T	c.(3649-3651)GCC>GTC	p.A1217V	SORBS1_uc001kkk.2_Missense_Mutation_p.A473V|SORBS1_uc001kkl.2_Missense_Mutation_p.A561V|SORBS1_uc001kkn.2_Missense_Mutation_p.A724V|SORBS1_uc001kkm.2_Missense_Mutation_p.A759V|SORBS1_uc001kko.2_Missense_Mutation_p.A1076V|SORBS1_uc001kkq.2_Missense_Mutation_p.A830V|SORBS1_uc001kkr.2_Missense_Mutation_p.A665V|SORBS1_uc001kks.2_Missense_Mutation_p.A609V|SORBS1_uc001kkt.2_RNA|SORBS1_uc001kku.2_Missense_Mutation_p.A706V|SORBS1_uc001kkv.2_Missense_Mutation_p.A741V|SORBS1_uc001kkw.2_Missense_Mutation_p.A1191V|SORBS1_uc010qoe.1_Missense_Mutation_p.A674V	NM_001034954	NP_001030126	Q9BX66	SRBS1_HUMAN	sorbin and SH3 domain containing 1 isoform 3	1217					focal adhesion assembly|glucose transport|insulin receptor signaling pathway|muscle contraction|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|positive regulation of glycogen biosynthetic process|positive regulation of lipid biosynthetic process|stress fiber assembly	centrosome|cytosol|focal adhesion|membrane raft|nucleus|stress fiber|zonula adherens	actin binding|insulin receptor binding|SH3/SH2 adaptor activity			breast(1)	1		Colorectal(252;0.0429)		Epithelial(162;1.7e-06)|all cancers(201;6.52e-05)		TCGCTGCTGGGCTTGAGGTTG	0.453000													38	52					0	0	1	0	0
ZNF518A	9849	broad.mit.edu	37	10	97918597	97918597	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:97918597C>T	uc001klp.2	+	6	3375	c.2518C>T	c.(2518-2520)CCA>TCA	p.P840S	ZNF518A_uc001klo.1_Missense_Mutation_p.P310S|ZNF518A_uc001klq.2_Missense_Mutation_p.P840S|ZNF518A_uc001klr.2_Missense_Mutation_p.P840S	NM_014803	NP_055618	Q6AHZ1	Z518A_HUMAN	zinc finger protein 518	840					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1		Colorectal(252;0.0815)		Epithelial(162;4.23e-08)|all cancers(201;1.85e-06)		AGGCATCTTCCCAGTTCCACC	0.383000													22	46					0	0	1	0	0
PPAPDC1A	196051	broad.mit.edu	37	10	122334753	122334753	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:122334753T>A	uc001lev.1	+	6	908	c.556T>A	c.(556-558)TTG>ATG	p.L186M	PPAPDC1A_uc010qtd.1_Missense_Mutation_p.L186M|PPAPDC1A_uc009xzl.1_Missense_Mutation_p.L123M|PPAPDC1A_uc001lew.1_Silent_p.P92P|PPAPDC1A_uc001lex.1_Intron|PPAPDC1A_uc001ley.1_Missense_Mutation_p.L65M	NM_001030059	NP_001025230	Q5VZY2	PPC1A_HUMAN	phosphatidic acid phosphatase type 2 domain	186	Helical; (Potential).				phospholipid dephosphorylation	integral to membrane	phosphatidate phosphatase activity			breast(1)	1		Lung NSC(174;0.1)|all_lung(145;0.132)		all cancers(201;0.0117)		CATCCTGCCCTTGTACTGCGC	0.612000													32	119					0	0	1	0	0
C10orf137	26098	broad.mit.edu	37	10	127422297	127422297	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr10:127422297C>T	uc001liq.1	+	11	1663	c.1370C>T	c.(1369-1371)GCC>GTC	p.A457V	C10orf137_uc001lin.2_Missense_Mutation_p.A423V|C10orf137_uc001lio.1_Missense_Mutation_p.A423V|C10orf137_uc001lip.1_Missense_Mutation_p.A161V|C10orf137_uc001lir.2_5'Flank	NM_015608	NP_056423	Q3B7T1	EDRF1_HUMAN	erythroid differentiation-related factor 1	457					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	binding			ovary(5)|large_intestine(3)|lung(2)	10		all_lung(145;0.0096)|Lung NSC(174;0.0145)|Colorectal(57;0.0846)|all_neural(114;0.0936)				ATGCCGGTAGCCATTCTCTTG	0.373000													26	26					0	0	1	0	0
IRF7	3665	broad.mit.edu	37	11	615007	615007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:615007C>T	uc001lqh.2	-	4	554	c.184G>A	c.(184-186)GCC>ACC	p.A62T	IRF7_uc009ycb.2_Intron|IRF7_uc010qwf.1_Missense_Mutation_p.A62T|IRF7_uc001lqf.2_5'UTR|IRF7_uc010qwg.1_5'UTR|IRF7_uc001lqg.2_Missense_Mutation_p.A75T|IRF7_uc001lqi.2_Missense_Mutation_p.A62T|IRF7_uc010qwh.1_5'UTR	NM_001572	NP_001563	Q92985	IRF7_HUMAN	interferon regulatory factor 7 isoform a	62	IRF tryptophan pentad repeat.				interferon-gamma-mediated signaling pathway|interspecies interaction between organisms|MyD88-independent toll-like receptor signaling pathway|negative regulation of transcription from RNA polymerase II promoter|positive regulation of interferon-alpha production|positive regulation of transcription from RNA polymerase II promoter|response to virus|Toll signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway|transcription from RNA polymerase II promoter|type I interferon-mediated signaling pathway	cytosol|endosome membrane|nucleoplasm|plasma membrane	DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0		all_cancers(49;1.69e-08)|all_epithelial(84;1.65e-05)|Breast(177;0.000231)|Ovarian(85;0.000953)|Medulloblastoma(188;0.0109)|all_neural(188;0.0299)|Lung NSC(207;0.106)|all_lung(207;0.136)		all cancers(45;7.68e-28)|Epithelial(43;7.44e-27)|OV - Ovarian serous cystadenocarcinoma(40;3.53e-21)|BRCA - Breast invasive adenocarcinoma(625;6.96e-05)|Lung(200;0.0375)|LUSC - Lung squamous cell carcinoma(625;0.0703)		ACAGCCCAGGCCTGAAGAGGG	0.741000													5	20					0	0	1	0	0
AP2A2	161	broad.mit.edu	37	11	1009160	1009160	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:1009160C>T	uc001lss.2	+	19	2662	c.2481C>T	c.(2479-2481)TTC>TTT	p.F827F		NM_012305	NP_036437	O94973	AP2A2_HUMAN	adaptor-related protein complex 2, alpha 2	827					axon guidance|endocytosis|epidermal growth factor receptor signaling pathway|intracellular protein transport|negative regulation of epidermal growth factor receptor signaling pathway|nerve growth factor receptor signaling pathway|regulation of defense response to virus by virus|synaptic transmission|viral reproduction	AP-2 adaptor complex|cytosol	lipid binding|protein transporter activity				0		all_cancers(49;9.46e-06)|Breast(177;0.00257)|all_epithelial(84;0.0027)|Ovarian(85;0.0228)|Medulloblastoma(188;0.0321)|all_neural(188;0.0762)		all cancers(45;1.75e-24)|BRCA - Breast invasive adenocarcinoma(625;5.73e-05)|Lung(200;0.0696)|LUSC - Lung squamous cell carcinoma(625;0.082)		ACAAATTCTTCCAGCCGACAG	0.542000													17	48					0	0	1	0	0
TRPM5	29850	broad.mit.edu	37	11	2432706	2432706	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:2432706G>A	uc001lwm.3	-	18	2667	c.2658C>T	c.(2656-2658)GCC>GCT	p.A886A	TRPM5_uc010qxl.1_Silent_p.A886A|TRPM5_uc009ydn.2_Silent_p.A888A	NM_014555	NP_055370	Q9NZQ8	TRPM5_HUMAN	transient receptor potential cation channel,	886	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity|voltage-gated ion channel activity			ovary(1)|breast(1)|central_nervous_system(1)|skin(1)	4		Medulloblastoma(188;0.0049)|Breast(177;0.00586)|all_epithelial(84;0.0075)|Ovarian(85;0.0256)|all_neural(188;0.0311)		BRCA - Breast invasive adenocarcinoma(625;0.00147)|LUSC - Lung squamous cell carcinoma(625;0.191)		TGACACCGTAGGCCACGAGCC	0.662000													18	49					0	0	1	0	0
OR52K1	390036	broad.mit.edu	37	11	4510786	4510786	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:4510786C>T	uc001lza.1	+	1	656	c.656C>T	c.(655-657)TCT>TTT	p.S219F		NM_001005171	NP_001005171	Q8NGK4	O52K1_HUMAN	olfactory receptor, family 52, subfamily K,	219	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;1.76e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0836)|LUSC - Lung squamous cell carcinoma(625;0.192)		GTTATCCTGTCTTATGTCTTC	0.507000													76	221					0	0	1	0	0
OR52M1	119772	broad.mit.edu	37	11	4566771	4566771	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:4566771C>T	uc010qyf.1	+	1	351	c.351C>T	c.(349-351)TTC>TTT	p.F117F		NM_001004137	NP_001004137	Q8NGK5	O52M1_HUMAN	olfactory receptor, family 52, subfamily M,	117	Helical; Name=3; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0		Medulloblastoma(188;0.0075)|Breast(177;0.0461)|all_neural(188;0.0577)		Epithelial(150;8.45e-12)|BRCA - Breast invasive adenocarcinoma(625;0.0285)|LUSC - Lung squamous cell carcinoma(625;0.19)		CAGGCATCTTCCTTGCCATGG	0.522000													45	84					0	0	1	0	0
MMP26	56547	broad.mit.edu	37	11	5013325	5013325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:5013325G>A	uc001lzv.2	+	5	745	c.727G>A	c.(727-729)GAT>AAT	p.D243N		NM_021801	NP_068573	Q9NRE1	MMP26_HUMAN	matrix metalloproteinase 26 preproprotein	243					collagen catabolic process|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding				0		Medulloblastoma(188;0.0025)|Breast(177;0.0204)|all_neural(188;0.0227)		Epithelial(150;1.33e-11)|BRCA - Breast invasive adenocarcinoma(625;0.0287)|LUSC - Lung squamous cell carcinoma(625;0.191)		GCTCAGTGCCGATGATATCCA	0.468000													32	66					0	0	1	0	0
OR52A5	390054	broad.mit.edu	37	11	5153287	5153288	+	Nonsense_Mutation	DNP	GG	AT	AT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:5153287_5153288GG>AT	uc010qyx.1	-	1	585_586	c.585_586CC>AT	c.(583-588)ATCCGA>ATATGA	p.R196*		NM_001005160	NP_001005160	Q9H2C5	O52A5_HUMAN	olfactory receptor, family 52, subfamily A,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			skin(2)|lung(1)|central_nervous_system(1)	4		Medulloblastoma(188;0.0049)|all_neural(188;0.0442)|Breast(177;0.0675)		Epithelial(150;1.74e-09)|BRCA - Breast invasive adenocarcinoma(625;0.135)|LUSC - Lung squamous cell carcinoma(625;0.2)		TTGTTGACTCGGATATCTTCAG	0.401000													44	124					0	0	1	0	0
OR56A5	390084	broad.mit.edu	37	11	5988855	5988855	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:5988855C>T	uc010qzu.1	-	1	870	c.870G>A	c.(868-870)CTG>CTA	p.L290L		NM_001146033	NP_001139505	P0C7T3	O56A5_HUMAN	olfactory receptor, family 56, subfamily A,	290	Helical; Name=7; (Potential).					integral to membrane|plasma membrane	olfactory receptor activity				0						CAATGGGGTTCAGAGCTGGGG	0.493000													15	42					0	0	1	0	0
DENND5A	23258	broad.mit.edu	37	11	9172244	9172245	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:9172244_9172245GG>AA	uc001mhl.2	-	14	2843_2844	c.2588_2589CC>TT	c.(2587-2589)TCC>TTT	p.S863F	DENND5A_uc001mhk.2_Missense_Mutation_p.S206F|DENND5A_uc010rbw.1_Missense_Mutation_p.S863F|DENND5A_uc010rbx.1_RNA	NM_015213	NP_056028	Q6IQ26	DEN5A_HUMAN	RAB6 interacting protein 1	863	RUN 1.									liver(1)	1						CCTGAATCAGGGAGATCCTCAG	0.431000													29	121					0	0	1	0	0
GALNTL4	374378	broad.mit.edu	37	11	11292836	11292836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:11292836C>T	uc001mjo.2	-	11	2100	c.1679G>A	c.(1678-1680)GGA>GAA	p.G560E		NM_198516	NP_940918	Q6P9A2	GLTL4_HUMAN	UDP-N-acetyl-alpha-D-galactosamine:polypeptide	560	Lumenal (Potential).|Ricin B-type lectin.					Golgi membrane|integral to membrane	polypeptide N-acetylgalactosaminyltransferase activity|sugar binding				0				all cancers(16;3.67e-05)|Epithelial(150;0.000184)		GATGGGTCCTCCCTAGGGGCC	0.592000													50	122					0	0	1	0	0
USP47	55031	broad.mit.edu	37	11	11944273	11944273	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:11944273A>T	uc001mjq.1	+	12	2044	c.1281A>T	c.(1279-1281)AAA>AAT	p.K427N	USP47_uc001mjr.2_Missense_Mutation_p.K339N|USP47_uc001mjs.2_Missense_Mutation_p.K407N	NM_017944	NP_060414	Q96K76	UBP47_HUMAN	ubiquitin specific protease 47	427					base-excision repair|cellular response to UV|monoubiquitinated protein deubiquitination|negative regulation of apoptosis|negative regulation of caspase activity|negative regulation of G2/M transition of mitotic cell cycle|negative regulation of transcription, DNA-dependent|positive regulation of cell growth|response to drug|ubiquitin-dependent protein catabolic process	cytoplasm|SCF ubiquitin ligase complex	ubiquitin thiolesterase activity|ubiquitin-specific protease activity|WD40-repeat domain binding			ovary(1)|skin(1)	2				Epithelial(150;0.000339)		TTATTAAGAAATCTCCTCAGA	0.333000													17	16					0	0	1	0	0
PDE3B	5140	broad.mit.edu	37	11	14665692	14665692	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:14665692C>T	uc001mln.2	+	1	424	c.71C>T	c.(70-72)CCC>CTC	p.P24L	PDE3B_uc001mlm.2_Missense_Mutation_p.P24L|PDE3B_uc010rcr.1_Missense_Mutation_p.P24L|PSMA1_uc001mll.2_5'Flank	NM_000922	NP_000913	Q13370	PDE3B_HUMAN	phosphodiesterase 3B	24					cAMP catabolic process|insulin receptor signaling pathway|negative regulation of lipid catabolic process|platelet activation	cytosol|endoplasmic reticulum|Golgi apparatus|guanyl-nucleotide exchange factor complex|integral to membrane|microsome	3',5'-cyclic-AMP phosphodiesterase activity|3',5'-cyclic-GMP phosphodiesterase activity|cGMP-inhibited cyclic-nucleotide phosphodiesterase activity|metal ion binding|protein kinase B binding				0						GGCTCGCCCCCCGAGAGTCTG	0.697000													6	13					0	0	1	0	0
MRGPRX3	117195	broad.mit.edu	37	11	18159468	18159468	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:18159468C>T	uc001mnu.2	+	3	1080	c.719C>T	c.(718-720)TCC>TTC	p.S240F		NM_054031	NP_473372	Q96LB0	MRGX3_HUMAN	MAS-related GPR, member X3	240	Extracellular (Potential).					integral to membrane|plasma membrane	G-protein coupled receptor activity			ovary(1)|pancreas(1)	2						GCCCTGTTTTCCAGGATCCAC	0.517000													21	46					0	0	1	0	0
ANO5	203859	broad.mit.edu	37	11	22248959	22248959	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:22248959C>T	uc001mqi.2	+	7	792	c.475C>T	c.(475-477)CCC>TCC	p.P159S	ANO5_uc001mqj.2_Missense_Mutation_p.P158S	NM_213599	NP_998764	Q75V66	ANO5_HUMAN	anoctamin 5 isoform a	159	Cytoplasmic (Potential).					chloride channel complex|endoplasmic reticulum membrane	chloride channel activity			central_nervous_system(3)|ovary(1)	4						GAGTGATATTCCCCGCCCTAA	0.433000													46	109					0	0	1	0	0
OR4A15	81328	broad.mit.edu	37	11	55136325	55136325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:55136325G>A	uc010rif.1	+	1	966	c.966G>A	c.(964-966)ATG>ATA	p.M322I		NM_001005275	NP_001005275	Q8NGL6	O4A15_HUMAN	olfactory receptor, family 4, subfamily A,	322	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2						ATGCAGAAATGAAAAGTGCCA	0.373000													46	105					0	0	1	0	0
OR5D16	390144	broad.mit.edu	37	11	55606511	55606511	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:55606511C>T	uc010rio.1	+	1	284	c.284C>T	c.(283-285)TCA>TTA	p.S95L		NM_001005496	NP_001005496	Q8NGK9	OR5DG_HUMAN	olfactory receptor, family 5, subfamily D,	95	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(4)|skin(1)	5		all_epithelial(135;0.208)				AGAACCATTTCATTCTCAGGA	0.408000													111	249					0	0	1	0	0
OR7E5P	219445	broad.mit.edu	37	11	55747418	55747418	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:55747418G>A	uc010riu.1	-	4	594	c.39C>T	c.(37-39)ATC>ATT	p.I13I		NR_027688				SubName: Full=HCG2036849; SubName: Full=Seven transmembrane helix receptor;												0						CGATGGCCAGGATAATGAGCA	0.597000													37	81					0	0	1	0	0
OR8H3	390152	broad.mit.edu	37	11	55890100	55890100	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:55890100G>A	uc001nii.1	+	1	252	c.252G>A	c.(250-252)GCG>GCA	p.A84A		NM_001005201	NP_001005201	Q8N146	OR8H3_HUMAN	olfactory receptor, family 8, subfamily H,	84	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)	2	Esophageal squamous(21;0.00693)					AAACCTTAGCGAACTTACTGA	0.438000													156	371					0	0	1	0	0
OR5AK2	390181	broad.mit.edu	37	11	56757003	56757003	+	Silent	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:56757003T>A	uc010rjp.1	+	1	615	c.615T>A	c.(613-615)TCT>TCA	p.S205S		NM_001005323	NP_001005323	Q8NH90	O5AK2_HUMAN	olfactory receptor, family 5, subfamily AK,	205	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3						TTGTGGGATCTAACTTGATAT	0.403000													86	190					0	0	1	0	0
OR5B2	390190	broad.mit.edu	37	11	58189835	58189835	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:58189835C>T	uc010rkg.1	-	1	900	c.900G>A	c.(898-900)AAG>AAA	p.K300K		NM_001005566	NP_001005566	Q96R09	OR5B2_HUMAN	olfactory receptor, family 5, subfamily B,	300	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)	3	Esophageal squamous(5;0.0027)	Breast(21;0.0778)				TCAACACTTTCTTGAATGCAT	0.388000													31	57					0	0	1	0	0
OR5A1	219982	broad.mit.edu	37	11	59211124	59211124	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:59211124C>T	uc001nnx.1	+	1	483	c.483C>T	c.(481-483)ATC>ATT	p.I161I		NM_001004728	NP_001004728	Q8NGJ0	OR5A1_HUMAN	olfactory receptor, family 5, subfamily A,	161	Helical; Name=4; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|central_nervous_system(1)	2						GCTCCCTGATCCAGGCCAGCT	0.557000													141	281					0	0	1	0	0
GIF	2694	broad.mit.edu	37	11	59599224	59599224	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:59599224G>A	uc001noi.2	-	8	1167	c.1119C>T	c.(1117-1119)ATC>ATT	p.I373I		NM_005142	NP_005133	P27352	IF_HUMAN	gastric intrinsic factor (vitamin B synthesis)	373					cobalamin metabolic process|cobalamin transport|cobalt ion transport	apical plasma membrane|endosome|extracellular space|microvillus	cobalamin binding			ovary(1)|liver(1)	2						CGATATTGTTGATAGAAGAGA	0.378000													30	71					0	0	1	0	0
TMEM132A	54972	broad.mit.edu	37	11	60701034	60701034	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:60701034C>T	uc001nqj.2	+	8	1570	c.1377C>T	c.(1375-1377)GCC>GCT	p.A459A	TMEM132A_uc001nqi.2_Silent_p.A460A|TMEM132A_uc001nqk.2_Silent_p.A472A|TMEM132A_uc001nql.1_3'UTR|TMEM132A_uc001nqm.2_5'Flank	NM_178031	NP_821174	Q24JP5	T132A_HUMAN	transmembrane protein 132A isoform b	459	Extracellular (Potential).					endoplasmic reticulum membrane|Golgi membrane|integral to membrane				skin(1)	1						CCTGTGATGCCGTGTTCGTGG	0.622000													9	60					0	0	1	0	0
CYBASC3	220002	broad.mit.edu	37	11	61121388	61121388	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:61121388G>A	uc001nrf.3	-	2	437	c.261C>T	c.(259-261)CAC>CAT	p.H87H	CYBASC3_uc010rlh.1_Silent_p.H104H|CYBASC3_uc001nrg.2_Silent_p.H87H|CYBASC3_uc009ynn.2_Intron|CYBASC3_uc001nrh.2_Silent_p.H87H|CYBASC3_uc001nri.2_RNA|CYBASC3_uc009yno.2_Silent_p.H87H	NM_001161452	NP_001154924	Q8NBI2	CYAC3_HUMAN	cytochrome b, ascorbate dependent 3 isoform 2	87	Helical; Name=3; (Potential).|Cytochrome b561.	Iron (heme axial ligand) (Potential).			electron transport chain|transport	integral to membrane|late endosome membrane|lysosomal membrane	metal ion binding|oxidoreductase activity				0						AGGCCATCAGGTGCAGCGCTG	0.602000													35	89					0	0	1	0	0
GPR137	56834	broad.mit.edu	37	11	64056676	64056677	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:64056676_64056677CC>TT	uc001nzg.1	+	8	1401_1402	c.1093_1094CC>TT	c.(1093-1095)CCC>TTC	p.P365F	GPR137_uc010rni.1_Missense_Mutation_p.P423F|GPR137_uc001nzf.2_3'UTR|GPR137_uc001nzi.2_3'UTR|GPR137_uc010rnj.1_3'UTR|KCNK4_uc009ypl.1_5'Flank|KCNK4_uc001nzj.1_5'Flank|KCNK4_uc001nzk.1_5'Flank|KCNK4_uc010rnk.1_5'Flank|KCNK4_uc001nzl.1_5'Flank|KCNK4_uc001nzm.3_5'Flank|KCNK4_uc001nzn.1_5'Flank	NM_020155	NP_064540	Q96N19	G137A_HUMAN	G protein-coupled receptor 137	365	Cytoplasmic (Potential).					integral to membrane				central_nervous_system(1)	1						TGATCCCCCTCCCTCCCCCACA	0.649000													59	140					0	0	1	0	0
SPDYC	387778	broad.mit.edu	37	11	64940037	64940037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:64940037G>A	uc010rnz.1	+	5	477	c.477G>A	c.(475-477)ATG>ATA	p.M159I		NM_001008778	NP_001008778	Q5MJ68	SPDYC_HUMAN	speedy C	159	Speedy/Ringo box; Required for CDK- binding (By similarity).				cell cycle	nucleus	protein kinase binding				0						GGGCACGGATGGGTTTCCGGG	0.577000													26	55					0	0	1	0	0
MAP3K11	4296	broad.mit.edu	37	11	65366868	65366868	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:65366868G>A	uc001oew.2	-	9	2696	c.2203C>T	c.(2203-2205)CGC>TGC	p.R735C	MAP3K11_uc001oev.2_Missense_Mutation_p.R151C|MAP3K11_uc010rol.1_Missense_Mutation_p.R478C|MAP3K11_uc001oex.1_Missense_Mutation_p.R242C	NM_002419	NP_002410	Q16584	M3K11_HUMAN	mitogen-activated protein kinase kinase kinase	735	Pro-rich.				activation of JUN kinase activity|cell proliferation|G1 phase of mitotic cell cycle|microtubule-based process|positive regulation of JNK cascade|protein autophosphorylation	centrosome|microtubule	ATP binding|JUN kinase kinase kinase activity|mitogen-activated protein kinase kinase kinase binding|protein homodimerization activity			breast(3)|lung(1)|central_nervous_system(1)|skin(1)	6						CACTCACCGCGGGGCTCCTCC	0.687000													18	39					0	0	1	0	0
SF3B2	10992	broad.mit.edu	37	11	65829377	65829377	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:65829377C>T	uc001ogy.1	+	16	1925	c.1885C>T	c.(1885-1887)CCT>TCT	p.P629S		NM_006842	NP_006833	Q13435	SF3B2_HUMAN	splicing factor 3B subunit 2	629					interspecies interaction between organisms	catalytic step 2 spliceosome|nucleoplasm|U12-type spliceosomal complex	nucleic acid binding|protein binding			ovary(2)|breast(1)	3						CCACAAGGTCCCTCCCCCATG	0.562000													18	54					0	0	1	0	0
CCDC87	55231	broad.mit.edu	37	11	66358090	66358090	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:66358090G>A	uc001oiq.3	-	1	2465	c.2397C>T	c.(2395-2397)ATC>ATT	p.I799I	CCS_uc001oir.2_5'Flank	NM_018219	NP_060689	Q9NVE4	CCD87_HUMAN	coiled-coil domain containing 87	799										ovary(1)|skin(1)	2						GCCCCTTGAAGATCACTGGCT	0.542000													91	243					0	0	1	0	0
DHCR7	1717	broad.mit.edu	37	11	71146478	71146478	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:71146478C>T	uc001oqk.2	-	9	1621	c.1371G>A	c.(1369-1371)CGG>CGA	p.R457R	DHCR7_uc001oql.2_Silent_p.R457R	NM_001163817	NP_001157289	Q9UBM7	DHCR7_HUMAN	7-dehydrocholesterol reductase	457					cholesterol biosynthetic process	endoplasmic reticulum membrane|integral to membrane|nuclear outer membrane	7-dehydrocholesterol reductase activity|protein binding			ovary(1)|liver(1)	2					NADH(DB00157)	GCTCCCAGTCCCGGCCGTACT	0.652000									Smith-Lemli-Opitz_syndrome				58	101					0	0	1	0	0
C2CD3	26005	broad.mit.edu	37	11	73834169	73834169	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:73834169G>A	uc001ouu.2	-	8	1456	c.1229C>T	c.(1228-1230)TCC>TTC	p.S410F	C2CD3_uc001ouv.2_Missense_Mutation_p.S410F	NM_015531	NP_056346	Q4AC94	C2CD3_HUMAN	C2 calcium-dependent domain containing 3	410						centrosome				ovary(4)|pancreas(2)|skin(1)	7	Breast(11;4.16e-06)					ATTGCCTTGGGATAATTCAGC	0.423000													17	41					0	0	1	0	0
POLD3	10714	broad.mit.edu	37	11	74329801	74329801	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:74329801C>T	uc001ovf.1	+	6	687	c.612C>T	c.(610-612)ACC>ACT	p.T204T	POLD3_uc009yua.1_Silent_p.T98T	NM_006591	NP_006582	Q15054	DPOD3_HUMAN	DNA-directed DNA polymerase delta 3	204					base-excision repair|DNA strand elongation involved in DNA replication|DNA synthesis involved in DNA repair|mismatch repair|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	delta DNA polymerase complex|nucleoplasm	DNA-directed DNA polymerase activity|protein binding			kidney(2)|ovary(1)	3	Breast(11;3.21e-06)					CTGCTAAAACCCAAGAAACCA	0.463000													17	17					0	0	1	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800093	74800093	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:74800093G>A	uc010rro.1	-	1	666	c.666C>T	c.(664-666)TCC>TCT	p.S222S		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	222	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						TGTGGACATAGGAGAGAAGCA	0.607000													13	25					0	0	1	0	0
OR2AT4	341152	broad.mit.edu	37	11	74800155	74800156	+	Missense_Mutation	DNP	GG	AC	AC			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:74800155_74800156GG>AC	uc010rro.1	-	1	603_604	c.603_604CC>GT	c.(601-606)ACCCTC>ACGTTC	p.L202F		NM_001005285	NP_001005285	A6NND4	O2AT4_HUMAN	olfactory receptor, family 2, subfamily AT,	202	Helical; Name=5; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1						AAGCCCATGAGGGTCTGGGGGG	0.569000													9	18					0	0	1	0	0
PRKRIR	5612	broad.mit.edu	37	11	76062392	76062392	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:76062392G>A	uc001oxh.1	-	5	1802	c.1802C>T	c.(1801-1803)GCT>GTT	p.A601V	PRKRIR_uc010rrz.1_Missense_Mutation_p.A426V	NM_004705	NP_004696	O43422	P52K_HUMAN	protein-kinase, interferon-inducible double	601					negative regulation of cell proliferation|response to stress|signal transduction		DNA binding|metal ion binding|protein dimerization activity			ovary(2)|pancreas(1)	3						GCATTTAAGAGCTTTGAGGTG	0.408000													51	113					0	0	1	0	0
CLNS1A	1207	broad.mit.edu	37	11	77333673	77333673	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:77333673C>T	uc001oyk.2	-	5	610	c.518G>A	c.(517-519)GGA>GAA	p.G173E	CLNS1A_uc001oyl.2_Missense_Mutation_p.G139E	NM_001293	NP_001284	P54105	ICLN_HUMAN	chloride channel, nucleotide-sensitive, 1A	173					blood circulation|cell volume homeostasis|chloride transport|ncRNA metabolic process|spliceosomal snRNP assembly	cytoskeleton|cytosol|nucleus|plasma membrane	protein binding			ovary(1)	1	all_cancers(14;5.43e-17)|all_epithelial(13;1.78e-19)		Epithelial(5;1.02e-48)|BRCA - Breast invasive adenocarcinoma(5;1.4e-30)			ATGGGATAATCCTTCTTCATA	0.398000													41	69					0	0	1	0	0
INTS4	92105	broad.mit.edu	37	11	77594934	77594934	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:77594934C>T	uc001oys.2	-	22	2685	c.2657G>A	c.(2656-2658)GGC>GAC	p.G886D	C11orf67_uc001oyp.2_Intron|C11orf67_uc001oyr.1_Intron|INTS4_uc001oyt.2_RNA	NM_033547	NP_291025	Q96HW7	INT4_HUMAN	integrator complex subunit 4	886					snRNA processing	integrator complex	protein binding			ovary(2)	2	all_cancers(14;4.53e-19)|all_epithelial(13;1.73e-21)|Breast(9;2.71e-16)|Ovarian(111;0.152)		Epithelial(5;1.13e-46)|all cancers(3;8.92e-44)|BRCA - Breast invasive adenocarcinoma(5;8.4e-26)|OV - Ovarian serous cystadenocarcinoma(8;1.05e-23)			CCGCCCTGGGCCAGGATTCCG	0.547000													4	32					0	0	1	0	0
ALG8	79053	broad.mit.edu	37	11	77820538	77820538	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:77820538G>A	uc001oza.1	-	9	1053	c.988C>T	c.(988-990)CCC>TCC	p.P330S	ALG8_uc001oyz.1_Missense_Mutation_p.P330S|ALG8_uc009yux.1_Missense_Mutation_p.P228S	NM_024079	NP_076984	Q9BVK2	ALG8_HUMAN	dolichyl pyrophosphate Glc1Man9GlcNAc2	330					dolichol-linked oligosaccharide biosynthetic process|post-translational protein modification|protein N-linked glycosylation via asparagine	endoplasmic reticulum membrane|integral to membrane	alpha-1,3-mannosyltransferase activity|dolichyl-phosphate-glucose-glycolipid alpha-glucosyltransferase activity			ovary(2)|pancreas(1)	3	all_cancers(14;3.62e-19)|all_epithelial(13;1.27e-21)|Breast(9;8.51e-17)|Ovarian(111;0.152)		OV - Ovarian serous cystadenocarcinoma(8;9.66e-25)			GTCACTGAGGGAAGGACTGTG	0.423000													48	132					0	0	1	0	0
ODZ4	26011	broad.mit.edu	37	11	78423683	78423683	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:78423683G>A	uc001ozl.3	-	26	4361	c.3898C>T	c.(3898-3900)CGG>TGG	p.R1300W		NM_001098816	NP_001092286	Q6N022	TEN4_HUMAN	odz, odd Oz/ten-m homolog 4	1300	NHL 2.|Extracellular (Potential).				signal transduction	integral to membrane				ovary(2)|pancreas(2)	4						AAGACCCGCCGGCTGTTGCTG	0.532000													39	68					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92532707	92532707	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:92532707C>T	uc001pdj.3	+	9	6545	c.6528C>T	c.(6526-6528)ATC>ATT	p.I2176I		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	2176	Cadherin 19.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				AGCTTCCCATCACTATTGTCA	0.428000										TCGA Ovarian(4;0.039)			17	20					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92565007	92565007	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:92565007C>T	uc001pdj.3	+	13	9718	c.9701C>T	c.(9700-9702)CCT>CTT	p.P3234L		NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3234	Cadherin 29.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				GACAACCCCCCTGTGTTTGAG	0.552000										TCGA Ovarian(4;0.039)			9	25					0	0	1	0	0
FAT3	120114	broad.mit.edu	37	11	92577105	92577105	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:92577105G>A	uc001pdj.3	+	18	10589	c.10572G>A	c.(10570-10572)AAG>AAA	p.K3524K	FAT3_uc001pdi.3_5'UTR	NM_001008781	NP_001008781	Q8TDW7	FAT3_HUMAN	FAT tumor suppressor homolog 3	3524	Cadherin 32.|Extracellular (Potential).				homophilic cell adhesion|multicellular organismal development	integral to membrane|plasma membrane	calcium ion binding			ovary(4)|pancreas(1)	5		Acute lymphoblastic leukemia(157;3.01e-05)|all_hematologic(158;0.00858)				TTTAGGCAAAGGATTCAGGCA	0.438000										TCGA Ovarian(4;0.039)			99	213					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93141478	93141478	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:93141478G>A	uc001pdq.2	+	12	1508	c.1408G>A	c.(1408-1410)GAT>AAT	p.D470N	CCDC67_uc001pdo.1_Missense_Mutation_p.D470N	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	470										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				GCTCCGAAATGATCTTGCAAA	0.348000													3	6					0	0	1	0	0
CCDC67	159989	broad.mit.edu	37	11	93148277	93148277	+	Silent	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:93148277A>T	uc001pdq.2	+	13	1735	c.1635A>T	c.(1633-1635)CCA>CCT	p.P545P	CCDC67_uc001pdo.1_Silent_p.P545P	NM_181645	NP_857596	Q05D60	CCD67_HUMAN	coiled-coil domain containing 67	545										ovary(1)	1		Acute lymphoblastic leukemia(157;2.35e-05)|all_hematologic(158;0.00824)				ATGTATTCCCACTGGTGAGTT	0.403000													14	80					0	0	1	0	0
HEPHL1	341208	broad.mit.edu	37	11	93800800	93800800	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:93800800G>A	uc001pep.2	+	5	1104	c.947G>A	c.(946-948)AGA>AAA	p.R316K	uc001pen.1_RNA	NM_001098672	NP_001092142	Q6MZM0	HPHL1_HUMAN	hephaestin-like 1 precursor	316	Plastocyanin-like 2.|Extracellular (Potential).				copper ion transport	integral to membrane	copper ion binding|oxidoreductase activity			ovary(3)	3		Acute lymphoblastic leukemia(157;2.34e-05)|all_hematologic(158;0.00824)				TTCATCAGCAGAGGGCATCGG	0.463000													33	256					0	0	1	0	0
PIWIL4	143689	broad.mit.edu	37	11	94320221	94320221	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:94320221C>T	uc001pfa.2	+	7	933	c.722C>T	c.(721-723)TCC>TTC	p.S241F	PIWIL4_uc010rue.1_RNA|PIWIL4_uc009ywk.1_RNA	NM_152431	NP_689644	Q7Z3Z4	PIWL4_HUMAN	piwi-like 4	241					cell differentiation|DNA methylation involved in gamete generation|gene silencing by RNA|meiosis|multicellular organismal development|piRNA metabolic process|regulation of translation|spermatogenesis	nucleus|piP-body	piRNA binding			skin(1)	1		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.0123)				TAAAGATTATCCCTTTGGCCT	0.353000													39	90					0	0	1	0	0
CNTN5	53942	broad.mit.edu	37	11	99932099	99932099	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:99932099C>T	uc001pga.2	+	10	1475	c.1136C>T	c.(1135-1137)TCC>TTC	p.S379F	CNTN5_uc009ywv.1_Missense_Mutation_p.S379F|CNTN5_uc001pfz.2_Missense_Mutation_p.S379F|CNTN5_uc001pgb.2_Missense_Mutation_p.S305F	NM_014361	NP_055176	O94779	CNTN5_HUMAN	contactin 5 isoform long	379	Ig-like C2-type 3.				cell adhesion	anchored to membrane|plasma membrane	protein binding			skin(3)|ovary(2)|pancreas(2)|breast(1)	8		all_hematologic(158;1.22e-05)|Acute lymphoblastic leukemia(157;3.81e-05)|Melanoma(852;0.219)		BRCA - Breast invasive adenocarcinoma(274;0.00146)|KIRC - Kidney renal clear cell carcinoma(183;0.156)|Kidney(183;0.196)		GGAAAAAATTCCTTTCGTGGA	0.408000													22	41					0	0	1	0	0
ANGPTL5	253935	broad.mit.edu	37	11	101762310	101762310	+	Silent	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:101762310G>T	uc001pgl.2	-	9	1463	c.867C>A	c.(865-867)CTC>CTA	p.L289L		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	289	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		CTTCTTTTTTGAGACCCCGGA	0.358000													6	45					2.0095e-06	2.03998e-06	1	1	0
ANGPTL5	253935	broad.mit.edu	37	11	101762312	101762312	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:101762312G>A	uc001pgl.2	-	9	1461	c.865C>T	c.(865-867)CTC>TTC	p.L289F		NM_178127	NP_835228	Q86XS5	ANGL5_HUMAN	angiopoietin-like 5 precursor	289	Fibrinogen C-terminal.				signal transduction	extracellular space	receptor binding			ovary(1)	1		Acute lymphoblastic leukemia(157;0.000966)|all_hematologic(158;0.043)		BRCA - Breast invasive adenocarcinoma(274;0.0328)		TCTTTTTTGAGACCCCGGAAT	0.363000													5	44					0	0	1	0	0
GRIA4	2893	broad.mit.edu	37	11	105732781	105732781	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:105732781A>C	uc001pix.2	+	5	965	c.519A>C	c.(517-519)AAA>AAC	p.K173N	GRIA4_uc001piu.1_Missense_Mutation_p.K173N|GRIA4_uc001piw.2_Missense_Mutation_p.K173N|GRIA4_uc001piv.2_Missense_Mutation_p.K173N|GRIA4_uc009yxk.1_Missense_Mutation_p.K173N	NM_000829	NP_000820	P48058	GRIA4_HUMAN	glutamate receptor, ionotrophic, AMPA 4 isoform	173	Extracellular (Potential).				glutamate signaling pathway|synaptic transmission	cell junction|endocytic vesicle membrane|integral to membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8		Melanoma(852;0.000902)|Acute lymphoblastic leukemia(157;0.000994)|all_hematologic(158;0.0017)|Breast(348;0.0323)		BRCA - Breast invasive adenocarcinoma(274;0.000147)|Epithelial(105;0.0291)|all cancers(92;0.0899)	L-Glutamic Acid(DB00142)	TTATGGAAAAAGCAGGACAAA	0.368000													21	99					0	0	1	0	0
AASDHPPT	60496	broad.mit.edu	37	11	105948468	105948468	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:105948468G>C	uc001pjc.1	+	1	177	c.31G>C	c.(31-33)GTG>CTG	p.V11L	KBTBD3_uc001pja.2_5'Flank|KBTBD3_uc001pjb.2_5'Flank|KBTBD3_uc009yxm.2_5'Flank|AASDHPPT_uc010rvn.1_RNA	NM_015423	NP_056238	Q9NRN7	ADPPT_HUMAN	aminoadipate-semialdehyde	11					macromolecule biosynthetic process|pantothenate metabolic process	cytosol	holo-[acyl-carrier-protein] synthase activity|magnesium ion binding|protein binding				0		Melanoma(852;0.000878)|Acute lymphoblastic leukemia(157;0.000967)|all_hematologic(158;0.0017)|Breast(348;0.0321)		BRCA - Breast invasive adenocarcinoma(274;5.78e-05)|Epithelial(105;0.00622)|all cancers(92;0.041)		GTTCTGCTTGGTGCCATCCAT	0.642000													21	140					0	0	1	0	0
DDX10	1662	broad.mit.edu	37	11	108559732	108559732	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:108559732C>T	uc001pkm.2	+	7	983	c.918C>T	c.(916-918)TCC>TCT	p.S306S	DDX10_uc001pkl.1_Silent_p.S306S	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10	306	Helicase C-terminal.						ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		TGCTGTATTCCTTTTTGAGAA	0.383000			T	NUP98	AML*								71	180					0	0	1	0	0
DDX10	1662	broad.mit.edu	37	11	108709293	108709293	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:108709293G>A	uc001pkm.2	+	14	2150	c.2085_splice	c.e14+1	p.E695_splice	DDX10_uc001pkl.1_Splice_Site_p.E695_splice	NM_004398	NP_004389	Q13206	DDX10_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 10								ATP binding|ATP-dependent helicase activity|RNA binding|RNA helicase activity			breast(2)|lung(1)|prostate(1)	4		all_cancers(61;1.29e-11)|all_epithelial(67;2.96e-07)|Melanoma(852;1.54e-05)|Acute lymphoblastic leukemia(157;4.24e-05)|all_hematologic(158;0.000141)|Breast(348;0.026)|all_neural(223;0.0729)		BRCA - Breast invasive adenocarcinoma(274;2.48e-05)|Epithelial(105;4.35e-05)|all cancers(92;0.000609)|OV - Ovarian serous cystadenocarcinoma(223;0.133)		TGAAGGGGAGGTAAGATTCTA	0.328000			T	NUP98	AML*								31	209					0	0	1	0	0
C11orf1	64776	broad.mit.edu	37	11	111753237	111753237	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:111753237A>G	uc001pmd.2	+	2	528	c.191A>G	c.(190-192)TAT>TGT	p.Y64C	C11orf1_uc001pme.2_Missense_Mutation_p.Y104C	NM_022761	NP_073598	Q9H5F2	CK001_HUMAN	hypothetical protein LOC64776	64						nucleus					0		all_cancers(61;1.26e-15)|all_epithelial(67;9.52e-10)|Melanoma(852;1.91e-06)|all_hematologic(158;0.000405)|Acute lymphoblastic leukemia(157;0.000967)|Breast(348;0.0112)|Medulloblastoma(222;0.0228)|all_neural(223;0.0281)		all cancers(92;6.28e-09)|Epithelial(105;4.11e-08)|OV - Ovarian serous cystadenocarcinoma(223;1.52e-07)|BRCA - Breast invasive adenocarcinoma(274;1.1e-06)		GAGAATACCTATTCAAACCGT	0.448000													20	56					0	0	1	0	0
Unknown	0	broad.mit.edu	37	11	113661099	113661099	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:113661099C>T	uc001pof.1	+	1		c.1147C>T								Homo sapiens cDNA FLJ36034 fis, clone TESTI2017107, highly similar to CYCLIC-AMP-DEPENDENT TRANSCRIPTION FACTOR ATF-4.																		TGTCCCCCTTCGACCAGTCGG	0.532000													36	79					0	0	1	0	0
BUD13	84811	broad.mit.edu	37	11	116633573	116633573	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:116633573G>A	uc001ppn.2	-	4	766	c.732C>T	c.(730-732)GTC>GTT	p.V244V	BUD13_uc001ppo.2_Intron|BUD13_uc009yzc.2_Silent_p.V244V	NM_032725	NP_116114	Q9BRD0	BUD13_HUMAN	BUD13 homolog isoform 1	244	Arg-rich.									large_intestine(1)|pancreas(1)	2	all_hematologic(175;0.0487)	all_cancers(61;1.72e-06)|all_epithelial(67;0.000735)|Melanoma(852;0.022)|Acute lymphoblastic leukemia(157;0.0255)|Medulloblastoma(222;0.0523)|Breast(348;0.056)|all_hematologic(158;0.0588)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|Epithelial(105;5.81e-06)|all cancers(92;0.000144)|OV - Ovarian serous cystadenocarcinoma(223;0.154)		AGTTGTTATGGACCCTTCTGG	0.542000													43	231					0	0	1	0	0
SIDT2	51092	broad.mit.edu	37	11	117063026	117063026	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:117063026C>T	uc001pqh.1	+	20	1970	c.1929C>T	c.(1927-1929)ATC>ATT	p.I643I	SIDT2_uc010rxe.1_Silent_p.I643I|SIDT2_uc001pqg.2_Silent_p.I664I|SIDT2_uc001pqi.1_Silent_p.I640I|SIDT2_uc001pqj.1_5'Flank	NM_001040455	NP_001035545	Q8NBJ9	SIDT2_HUMAN	SID1 transmembrane family, member 2 precursor	643	Helical; (Potential).					integral to membrane|lysosomal membrane					0	all_hematologic(175;0.0487)	Breast(348;0.00908)|Medulloblastoma(222;0.0425)|all_hematologic(192;0.196)|all_neural(223;0.234)		BRCA - Breast invasive adenocarcinoma(274;1.69e-05)|Epithelial(105;0.000219)|all cancers(92;0.00144)		TTCACATCATCGCCACCCTGC	0.637000													62	106					0	0	1	0	0
MLL	4297	broad.mit.edu	37	11	118373240	118373240	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:118373240G>A	uc001pta.2	+	27	6647	c.6624G>A	c.(6622-6624)CGG>CGA	p.R2208R	MLL_uc001ptb.2_Silent_p.R2211R	NM_005933	NP_005924	Q03164	MLL1_HUMAN	myeloid/lymphoid or mixed-lineage leukemia	2208					apoptosis|embryonic hemopoiesis|histone H4-K16 acetylation|positive regulation of transcription, DNA-dependent|protein complex assembly|transcription from RNA polymerase II promoter	MLL1 complex	AT DNA binding|histone acetyl-lysine binding|histone methyltransferase activity (H3-K4 specific)|protein homodimerization activity|sequence-specific DNA binding transcription factor activity|transcription regulatory region DNA binding|unmethylated CpG binding|zinc ion binding			lung(7)|ovary(5)|kidney(5)|central_nervous_system(3)|pancreas(2)|urinary_tract(1)|breast(1)|skin(1)	25	all_hematologic(175;0.046)	all_hematologic(192;1.13e-50)|all_neural(223;3.18e-06)|Breast(348;1.07e-05)|Medulloblastoma(222;0.0425)|Hepatocellular(160;0.244)		OV - Ovarian serous cystadenocarcinoma(223;2.77e-44)|BRCA - Breast invasive adenocarcinoma(274;1.2e-11)|Lung(307;3.48e-06)|LUSC - Lung squamous cell carcinoma(976;7.92e-05)|Colorectal(284;0.144)		CCAAACTCCGGATAATGTCTC	0.488000			T|O	MLL|MLLT1|MLLT2|MLLT3|MLLT4|MLLT7|MLLT10|MLLT6|ELL|EPS15|AF1Q|CREBBP|SH3GL1|FNBP1|PNUTL1|MSF|GPHN|GMPS|SSH3BP1|ARHGEF12|GAS7|FOXO3A|LAF4|LCX|SEPT6|LPP|CBFA2T1|GRAF|EP300|PICALM|HEAB	AML|ALL								20	48					0	0	1	0	0
ABCG4	64137	broad.mit.edu	37	11	119031753	119031753	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:119031753C>T	uc001pvs.2	+	15	2214	c.1878C>T	c.(1876-1878)TTC>TTT	p.F626F	ABCG4_uc009zar.2_Silent_p.F626F	NM_022169	NP_071452	Q9H172	ABCG4_HUMAN	ATP-binding cassette, subfamily G, member 4	626	ABC transmembrane type-2.|Helical; Name=6; (Potential).				cholesterol efflux	integral to membrane	ATP binding|ATPase activity|protein heterodimerization activity|protein homodimerization activity			ovary(2)	2	all_hematologic(175;0.0977)	Medulloblastoma(222;0.0425)|Breast(348;0.052)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;7.7e-05)		TGGGCATCTTCTTCCTAGCCC	0.612000													27	70					0	0	1	0	0
OR6X1	390260	broad.mit.edu	37	11	123624669	123624669	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:123624669G>A	uc010rzy.1	-	1	558	c.558C>T	c.(556-558)GCC>GCT	p.A186A		NM_001005188	NP_001005188	Q8NH79	OR6X1_HUMAN	olfactory receptor, family 6, subfamily X,	186	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0109)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0279)		TGTCTATGCAGGCGGCTTTCA	0.438000													16	119					0	0	1	0	0
OR4D5	219875	broad.mit.edu	37	11	123810601	123810601	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:123810601C>T	uc001pzk.1	+	1	278	c.278C>T	c.(277-279)TCC>TTC	p.S93F		NM_001001965	NP_001001965	Q8NGN0	OR4D5_HUMAN	olfactory receptor, family 4, subfamily D,	93	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.00867)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;4.88e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0399)		CCTACCATTTCCTTTGGTGGA	0.468000													36	65					0	0	1	0	0
OR8D1	283159	broad.mit.edu	37	11	124179743	124179743	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:124179743C>T	uc010sag.1	-	1	920	c.920G>A	c.(919-921)GGA>GAA	p.G307E		NM_001002917	NP_001002917	Q8WZ84	OR8D1_HUMAN	olfactory receptor, family 8, subfamily D,	307	Cytoplasmic (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|skin(1)	3		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.22)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0528)		GACTCATTTTCCTACTAAGAC	0.368000													22	56					0	0	1	0	0
OR8A1	390275	broad.mit.edu	37	11	124440836	124440836	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:124440836C>T	uc010san.1	+	1	872	c.872C>T	c.(871-873)TCT>TTT	p.S291F		NM_001005194	NP_001005194	Q8NGG7	OR8A1_HUMAN	olfactory receptor, family 8, subfamily A,	291	Helical; Name=7; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		Breast(109;0.0115)|Medulloblastoma(222;0.0523)|Lung NSC(97;0.118)|all_lung(97;0.126)|all_neural(223;0.224)		BRCA - Breast invasive adenocarcinoma(274;1.49e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0214)		AATGTGGCCTCTGTGTTCTAC	0.493000													27	52					0	0	1	0	0
CCDC15	80071	broad.mit.edu	37	11	124857585	124857585	+	Missense_Mutation	SNP	C	A	A	rs112861775		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:124857585C>A	uc001qbm.3	+	8	1722	c.1463C>A	c.(1462-1464)CCC>CAC	p.P488H		NM_025004	NP_079280	Q0P6D6	CCD15_HUMAN	coiled-coil domain containing 15	488						centrosome				ovary(1)|central_nervous_system(1)	2	all_hematologic(175;0.215)	Breast(109;0.00222)|Lung NSC(97;0.0177)|all_lung(97;0.0179)|Medulloblastoma(222;0.0425)|all_neural(223;0.112)		BRCA - Breast invasive adenocarcinoma(274;1.68e-06)|OV - Ovarian serous cystadenocarcinoma(99;0.0413)		CATGTTCTCCCCAAAGACCAA	0.403000													5	130					0.184627	0.18484	1	1	0
APLP2	334	broad.mit.edu	37	11	130011452	130011453	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:130011452_130011453CC>TT	uc010sby.1	+	16	2176_2177	c.2019_2020CC>TT	c.(2017-2022)GGCCTC>GGTTTC	p.L674F	APLP2_uc001qfp.2_Missense_Mutation_p.L662F|APLP2_uc001qfq.2_Missense_Mutation_p.L606F|APLP2_uc010sbz.1_Missense_Mutation_p.L462F|APLP2_uc001qfr.2_Missense_Mutation_p.L428F|APLP2_uc001qfs.2_Missense_Mutation_p.L433F|APLP2_uc001qfv.2_Missense_Mutation_p.L565F|APLP2_uc009zcv.2_Missense_Mutation_p.L22F	NM_001642	NP_001633	Q06481	APLP2_HUMAN	amyloid beta (A4) precursor-like protein 2	674	Extracellular (Potential).				G-protein coupled receptor protein signaling pathway	integral to membrane|nucleus|plasma membrane	DNA binding|identical protein binding|serine-type endopeptidase inhibitor activity			ovary(3)	3	all_hematologic(175;0.0429)	Breast(109;0.00586)|Lung NSC(97;0.00785)|all_lung(97;0.0154)|Medulloblastoma(222;0.0523)|all_neural(223;0.186)		OV - Ovarian serous cystadenocarcinoma(99;0.0197)|Lung(977;0.24)		GAGTTGGAGGCCTCGAGGAAGA	0.480000													22	75					0	0	1	0	0
ADAMTS15	170689	broad.mit.edu	37	11	130318952	130318952	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:130318952C>T	uc010scd.1	+	1	84	c.84C>T	c.(82-84)CCC>CCT	p.P28P		NM_139055	NP_620686	Q8TE58	ATS15_HUMAN	a disintegrin-like and metalloprotease	28					proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			large_intestine(2)|pancreas(1)|lung(1)|skin(1)	5	all_hematologic(175;0.0429)	Lung NSC(97;0.000601)|Breast(109;0.000962)|all_lung(97;0.00125)|Medulloblastoma(222;0.0425)|all_neural(223;0.0837)		OV - Ovarian serous cystadenocarcinoma(99;0.0631)|Lung(977;0.215)		TAGTCGTTCCCATCCGACTGG	0.637000													16	31					0	0	1	0	0
CACNA2D4	93589	broad.mit.edu	37	12	1995503	1995503	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:1995503C>T	uc001qjp.2	-	8	1110	c.879G>A	c.(877-879)GTG>GTA	p.V293V	CACNA2D4_uc009zds.1_RNA|CACNA2D4_uc009zdt.1_Intron	NM_172364	NP_758952	Q7Z3S7	CA2D4_HUMAN	voltage-gated calcium channel alpha(2)delta-4	293	VWFA.|Extracellular (Potential).					integral to membrane	calcium channel activity|metal ion binding|voltage-gated ion channel activity			ovary(1)	1	Ovarian(42;0.107)	Myeloproliferative disorder(1001;0.206)	OV - Ovarian serous cystadenocarcinoma(31;0.00113)	Kidney(2;0.0205)|KIRC - Kidney renal clear cell carcinoma(2;0.0451)		CCACCAAAATCACTATGTCCT	0.507000													9	58					0	0	1	0	0
DCP1B	196513	broad.mit.edu	37	12	2062350	2062350	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:2062350C>G	uc001qjx.1	-	7	836	c.756G>C	c.(754-756)CAG>CAC	p.Q252H	DCP1B_uc010sdy.1_Missense_Mutation_p.Q150H	NM_152640	NP_689853	Q8IZD4	DCP1B_HUMAN	decapping enzyme Dcp1b	252	Poly-Gln.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytosol|nucleus	hydrolase activity|protein binding			skin(1)	1			OV - Ovarian serous cystadenocarcinoma(31;0.00193)			gctgctgctgctgGTGGAGAG	0.458000													3	57					0	0	1	0	0
TEAD4	7004	broad.mit.edu	37	12	3131141	3131141	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:3131141C>T	uc010sej.1	+	10	1129	c.852C>T	c.(850-852)TTC>TTT	p.F284F	TEAD4_uc010sek.1_Silent_p.F241F|TEAD4_uc001qln.2_Silent_p.F156F	NM_003213	NP_003204	Q15561	TEAD4_HUMAN	TEA domain family member 4 isoform 1	285					hippo signaling cascade|muscle organ development|skeletal system development		DNA binding|protein binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(42;0.211)		OV - Ovarian serous cystadenocarcinoma(31;0.000563)|COAD - Colon adenocarcinoma(12;0.0831)			AGGATCTCTTCGAACGGGGAC	0.532000													33	148					0	0	1	0	0
FGF23	8074	broad.mit.edu	37	12	4479704	4479704	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:4479704C>T	uc001qmq.1	-	3	707	c.561G>A	c.(559-561)CGG>CGA	p.R187R		NM_020638	NP_065689	Q9GZV9	FGF23_HUMAN	fibroblast growth factor 23 precursor	187					cell differentiation|insulin receptor signaling pathway|negative regulation of bone mineralization|negative regulation of hormone secretion|negative regulation of osteoblast differentiation|positive regulation of vitamin D 24-hydroxylase activity|regulation of phosphate transport|vitamin D catabolic process	extracellular space	growth factor activity			ovary(2)|breast(1)|skin(1)	4			Colorectal(7;0.00165)|COAD - Colon adenocarcinoma(12;0.0229)|STAD - Stomach adenocarcinoma(119;0.206)			TCAGGGGGTCCCGCTCCGAGT	0.682000													14	49					0	0	1	0	0
ANO2	57101	broad.mit.edu	37	12	5939646	5939646	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:5939646G>A	uc001qnm.2	-	6	855	c.783C>T	c.(781-783)ATC>ATT	p.I261I		NM_020373	NP_065106	Q9NQ90	ANO2_HUMAN	anoctamin 2	266	Cytoplasmic (Potential).					chloride channel complex|plasma membrane	intracellular calcium activated chloride channel activity			ovary(4)|large_intestine(2)|central_nervous_system(1)	7						CCTTTTCCTGGATGTTGTACC	0.468000													5	21					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7636159	7636159	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:7636159C>T	uc001qsz.3	-	12	3020	c.2892G>A	c.(2890-2892)CAG>CAA	p.Q964Q	CD163_uc001qta.3_Silent_p.Q964Q|CD163_uc009zfw.2_Silent_p.Q997Q	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	964	SRCR 9.|Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						GACACACCACCTGAGCATCGT	0.517000													36	73					0	0	1	0	0
CD163	9332	broad.mit.edu	37	12	7639560	7639560	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:7639560G>A	uc001qsz.3	-	9	2201	c.2073C>T	c.(2071-2073)TCC>TCT	p.S691S	CD163_uc001qta.3_Silent_p.S691S|CD163_uc009zfw.2_Silent_p.S724S	NM_004244	NP_004235	Q86VB7	C163A_HUMAN	CD163 antigen isoform a	691	Extracellular (Potential).				acute-phase response	extracellular region|integral to plasma membrane	protein binding|scavenger receptor activity			ovary(6)|pancreas(1)|skin(1)	8						AATTGCACGAGGACAGTGTTT	0.443000													21	73					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	9016488	9016488	+	Silent	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:9016488T>C	uc001quz.3	+	29	3699	c.3601T>C	c.(3601-3603)TTG>CTG	p.L1201L	A2ML1_uc001qva.1_Silent_p.L781L|A2ML1_uc010sgm.1_Silent_p.L701L	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	1045						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						AGCATATGCATTGTTGGCCCA	0.527000													19	75					0	0	1	0	0
A2ML1	144568	broad.mit.edu	37	12	9016586	9016586	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:9016586G>A	uc001quz.3	+	29	3797	c.3699G>A	c.(3697-3699)GGG>GGA	p.G1233G	A2ML1_uc001qva.1_Silent_p.G813G|A2ML1_uc010sgm.1_Silent_p.G733G	NM_144670	NP_653271	A8K2U0	A2ML1_HUMAN	alpha-2-macroglobulin-like 1 precursor	1077						extracellular space	endopeptidase inhibitor activity			ovary(2)|skin(1)	3						ATGCATATGGGGGCTTCTCTT	0.483000													8	38					0	0	1	0	0
TAS2R31	259290	broad.mit.edu	37	12	11183624	11183624	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:11183624A>G	uc001qzo.1	-	1	383	c.311T>C	c.(310-312)ATA>ACA	p.I104T	PRR4_uc009zhp.2_Intron|PRH1_uc001qzb.3_Intron|PRH1_uc001qzc.2_Intron|PRB4_uc001qzf.1_Intron|PRH1_uc001qzj.2_Intron	NM_176885	NP_795366	P59538	T2R31_HUMAN	taste receptor, type 2, member 31	104	Helical; Name=3; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity				0						CAAATAAAATATGCTGAGGCT	0.393000													15	153					0	0	1	0	0
GUCY2C	2984	broad.mit.edu	37	12	14849277	14849277	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:14849277C>T	uc001rcd.2	-	1	243	c.106G>A	c.(106-108)GAA>AAA	p.E36K	GUCY2C_uc009zhz.2_Missense_Mutation_p.E36K	NM_004963	NP_004954	P25092	GUC2C_HUMAN	guanylate cyclase 2C precursor	36	Extracellular (Potential).				intracellular signal transduction|receptor guanylyl cyclase signaling pathway	integral to membrane	ATP binding|GTP binding|guanylate cyclase activity|protein binding|protein kinase activity|receptor activity			ovary(4)|skin(2)	6						ACGCTGATTTCATAGCTGCCA	0.532000													15	20					0	0	1	0	0
Unknown	0	broad.mit.edu	37	12	24736497	24736497	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:24736497C>T	uc001rgb.1	-	1		c.606G>A								Homo sapiens cDNA FLJ32894 fis, clone TESTI2004994.																		TGAAAATCTCCCCAGACCCCA	0.527000													9	51					0	0	1	0	0
ITPR2	3709	broad.mit.edu	37	12	26868297	26868297	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:26868297G>A	uc001rhg.2	-	8	1207	c.790C>T	c.(790-792)CTT>TTT	p.L264F		NM_002223	NP_002214	Q14571	ITPR2_HUMAN	inositol 1,4,5-triphosphate receptor, type 2	264	Cytoplasmic (Potential).|MIR 3.				activation of phospholipase C activity|energy reserve metabolic process|nerve growth factor receptor signaling pathway|platelet activation|regulation of insulin secretion|response to hypoxia	integral to membrane|plasma membrane enriched fraction|platelet dense tubular network membrane|sarcoplasmic reticulum membrane	calcium ion transmembrane transporter activity|inositol 1,4,5-trisphosphate-sensitive calcium-release channel activity			kidney(6)|ovary(4)|skin(2)|upper_aerodigestive_tract(1)|lung(1)	14	Colorectal(261;0.0847)					GTCGTACGAAGGAAAATGTGC	0.373000													50	91					0	0	1	0	0
DENND5B	160518	broad.mit.edu	37	12	31605201	31605201	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:31605201G>A	uc001rki.1	-	5	1488	c.1302C>T	c.(1300-1302)AAC>AAT	p.N434N	DENND5B_uc001rkh.1_Silent_p.N469N|DENND5B_uc009zjq.1_Silent_p.N353N|DENND5B_uc001rkj.2_Silent_p.N456N|DENND5B_uc001rkk.1_Silent_p.N356N	NM_144973	NP_659410	Q6ZUT9	DEN5B_HUMAN	DENN/MADD domain containing 5B	434				N -> D (in Ref. 4; AAH68580).		integral to membrane				ovary(1)|central_nervous_system(1)	2						AGACATTGCCGTTCTTTTTGT	0.468000													4	176					0	0	1	0	0
BICD1	636	broad.mit.edu	37	12	32481453	32481453	+	Silent	SNP	C	T	T	rs139652205		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:32481453C>T	uc001rku.2	+	5	2145	c.2064C>T	c.(2062-2064)ATC>ATT	p.I688I	BICD1_uc001rkv.2_Silent_p.I688I|BICD1_uc010skd.1_RNA	NM_001714	NP_001705	Q96G01	BICD1_HUMAN	bicaudal D homolog 1 isoform 1	688	Potential.|Interacts with RAB6A.				anatomical structure morphogenesis|intracellular mRNA localization|microtubule anchoring at microtubule organizing center|minus-end-directed organelle transport along microtubule|positive regulation of receptor-mediated endocytosis|protein localization to organelle|RNA processing|stress granule assembly|viral reproduction	cytoplasmic vesicle|cytoskeleton|cytosol|host cell viral assembly compartment|membrane|perinuclear region of cytoplasm|trans-Golgi network	cytoskeletal adaptor activity|dynactin binding|dynein binding|proteinase activated receptor binding|Rab GTPase binding|structural constituent of cytoskeleton			large_intestine(1)|central_nervous_system(1)	2	all_cancers(9;5.13e-11)|all_epithelial(9;2.71e-11)|all_lung(12;6.66e-10)|Acute lymphoblastic leukemia(23;0.0122)|Lung SC(12;0.0213)|all_hematologic(23;0.0429)|Esophageal squamous(101;0.204)		OV - Ovarian serous cystadenocarcinoma(6;0.0201)			GGGAGCAGATCGCCACATTGA	0.473000													25	88					0	0	1	0	0
CNTN1	1272	broad.mit.edu	37	12	41386931	41386931	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:41386931T>A	uc001rmm.1	+	17	2086	c.1973T>A	c.(1972-1974)ATT>AAT	p.I658N	CNTN1_uc001rmn.1_Missense_Mutation_p.I647N	NM_001843	NP_001834	Q12860	CNTN1_HUMAN	contactin 1 isoform 1 precursor	658	Fibronectin type-III 1.				axon guidance|cell adhesion|Notch signaling pathway	anchored to membrane|membrane fraction|plasma membrane				lung(4)|ovary(3)|large_intestine(1)|skin(1)	9	all_cancers(12;2.07e-06)|all_epithelial(1;4.26e-06)|Breast(8;0.0716)	Lung NSC(34;0.0211)|all_lung(34;0.0294)				GATCCCCCAATTATTGAAGGA	0.368000													72	110					0	0	1	0	0
PRICKLE1	144165	broad.mit.edu	37	12	42854184	42854184	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:42854184C>T	uc010skv.1	-	8	2210	c.1923G>A	c.(1921-1923)GGG>GGA	p.G641G	PRICKLE1_uc001rnl.2_Silent_p.G641G|PRICKLE1_uc010skw.1_Silent_p.G641G|PRICKLE1_uc001rnm.2_Silent_p.G641G|PRICKLE1_uc001rnk.1_5'Flank	NM_001144881	NP_001138353	Q96MT3	PRIC1_HUMAN	prickle homolog 1	641					negative regulation of canonical Wnt receptor signaling pathway|negative regulation of cardiac muscle cell myoblast differentiation|negative regulation of transcription, DNA-dependent|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of protein ubiquitination|protein import into nucleus	cytosol|nuclear membrane	zinc ion binding			ovary(3)|skin(1)	4	all_cancers(12;4.25e-05)|Breast(8;0.176)			GBM - Glioblastoma multiforme(48;0.2)		TGTCATAGTTCCCATTGTCAA	0.507000													11	38					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47471828	47471828	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:47471828C>T	uc001rpm.2	-	3	1613	c.958G>A	c.(958-960)GAT>AAT	p.D320N	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.D320N|AMIGO2_uc001rpl.2_Missense_Mutation_p.D320N	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	320	Extracellular (Potential).|Ig-like C2-type.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					CAGATGAAATCCGTATTTGCA	0.463000													61	137					0	0	1	0	0
AMIGO2	347902	broad.mit.edu	37	12	47472445	47472445	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:47472445G>A	uc001rpm.2	-	3	996	c.341C>T	c.(340-342)TCC>TTC	p.S114F	FAM113B_uc001rpn.2_5'Flank|AMIGO2_uc001rpk.2_Missense_Mutation_p.S114F|AMIGO2_uc001rpl.2_Missense_Mutation_p.S114F	NM_001143668	NP_001137140	Q86SJ2	AMGO2_HUMAN	adhesion molecule with Ig-like domain 2	114	Extracellular (Potential).|LRR 2.				heterophilic cell-cell adhesion|homophilic cell adhesion	integral to membrane|nucleus|plasma membrane				ovary(1)|skin(1)	2	Renal(347;0.138)|Lung SC(27;0.192)					TGGAGTTGTGGAAAAACTGCC	0.433000													22	110					0	0	1	0	0
C12orf54	121273	broad.mit.edu	37	12	48880471	48880471	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:48880471G>A	uc001rrr.2	+	3	154	c.97G>A	c.(97-99)GAA>AAA	p.E33K	C12orf54_uc009zky.1_RNA	NM_152319	NP_689532	Q6X4T0	CL054_HUMAN	hypothetical protein LOC121273	33											0						ATTTCTACAGGAAAAACAGGT	0.438000													8	40					0	0	1	0	0
GPD1	2819	broad.mit.edu	37	12	50498357	50498357	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:50498357G>A	uc001rvz.2	+	2	75	c.42G>A	c.(40-42)TGG>TGA	p.W14*	GPD1_uc010smp.1_Nonsense_Mutation_p.W14*|GPD1_uc001rwa.2_Nonsense_Mutation_p.W14*	NM_005276	NP_005267	P21695	GPDA_HUMAN	glycerol-3-phosphate dehydrogenase 1 (soluble)	14	NAD.				glycerol-3-phosphate catabolic process|triglyceride biosynthetic process	cytosol|glycerol-3-phosphate dehydrogenase complex	glycerol-3-phosphate dehydrogenase|protein homodimerization activity				0					NADH(DB00157)	CTCCCACCAGGGGCTCAGCCA	0.622000													51	67					0	0	1	0	0
LIMA1	51474	broad.mit.edu	37	12	50616039	50616039	+	Nonsense_Mutation	SNP	G	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:50616039G>C	uc001rwj.3	-	4	569	c.395C>G	c.(394-396)TCA>TGA	p.S132*	LIMA1_uc001rwh.3_5'UTR|LIMA1_uc001rwi.3_5'UTR|LIMA1_uc001rwk.3_Nonsense_Mutation_p.S132*|LIMA1_uc010smr.1_RNA|LIMA1_uc010sms.1_RNA	NM_016357	NP_057441	Q9UHB6	LIMA1_HUMAN	LIM domain and actin binding 1 isoform b	132					actin filament bundle assembly|negative regulation of actin filament depolymerization|ruffle organization	cytoplasm|focal adhesion|stress fiber	actin filament binding|actin monomer binding|zinc ion binding			ovary(1)	1						TTCAGGAGGTGACCTGAGTCT	0.488000													44	51					0	0	1	0	0
TMPRSS12	283471	broad.mit.edu	37	12	51279119	51279119	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:51279119C>T	uc001rwx.3	+	4	790	c.743C>T	c.(742-744)CCT>CTT	p.P248L	TMPRSS12_uc001rwy.2_Missense_Mutation_p.P248L	NM_182559	NP_872365	Q86WS5	TMPSC_HUMAN	transmembrane protease, serine 12 precursor	248	Peptidase S1.|Extracellular (Potential).				proteolysis	integral to membrane	serine-type endopeptidase activity				0						GGAATAATTCCTAACACTTCA	0.363000													35	172					0	0	1	0	0
KRT74	121391	broad.mit.edu	37	12	52966383	52966383	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:52966383C>T	uc001sap.1	-	2	588	c.540G>A	c.(538-540)CTG>CTA	p.L180L		NM_175053	NP_778223	Q7RTS7	K2C74_HUMAN	keratin 6 irs4	180	Rod.|Linker 1.					keratin filament	structural molecule activity			ovary(1)|skin(1)	2				BRCA - Breast invasive adenocarcinoma(357;0.191)		TGCAGTTGTTCAGGTCCAGCT	0.557000													32	58					0	0	1	0	0
SHMT2	6472	broad.mit.edu	37	12	57627354	57627354	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:57627354C>T	uc001snf.1	+	9	1042	c.1032C>T	c.(1030-1032)ACC>ACT	p.T344T	SHMT2_uc001sng.1_Silent_p.T240T|SHMT2_uc001snh.1_Silent_p.T183T|SHMT2_uc009zpk.1_Silent_p.T334T|SHMT2_uc001sni.1_Silent_p.T323T|SHMT2_uc010srg.1_Silent_p.T353T|SHMT2_uc001snj.1_Silent_p.T248T|SHMT2_uc010srh.1_Silent_p.T323T|SHMT2_uc001snk.1_Silent_p.T248T|SHMT2_uc010sri.1_Silent_p.T323T|SHMT2_uc001snl.2_Silent_p.T248T|SHMT2_uc010srj.1_5'UTR	NM_005412	NP_005403	P34897	GLYM_HUMAN	serine hydroxymethyltransferase 2	344						microtubule cytoskeleton|mitochondrial nucleoid	glycine hydroxymethyltransferase activity|methyltransferase activity			ovary(1)|central_nervous_system(1)	2					Glycine(DB00145)|Pyridoxal Phosphate(DB00114)|Tetrahydrofolic acid(DB00116)	AGGCCTGCACCCCCATGTTCC	0.602000													19	80					0	0	1	0	0
DTX3	196403	broad.mit.edu	37	12	58000787	58000787	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:58000787C>T	uc001sow.1	+	5	478	c.141C>T	c.(139-141)TCC>TCT	p.S47S	DTX3_uc001sov.1_Silent_p.S40S|DTX3_uc001sox.1_Silent_p.S40S|DTX3_uc001soy.1_Silent_p.S40S	NM_178502	NP_848597	Q8N9I9	DTX3_HUMAN	deltex homolog 3	47					Notch signaling pathway	cytoplasm	zinc ion binding			breast(1)|central_nervous_system(1)	2	Melanoma(17;0.122)					ACCGTGTGTCCATCCTCATAG	0.607000													124	183					0	0	1	0	0
PTPRR	5801	broad.mit.edu	37	12	71092066	71092066	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:71092066G>A	uc001swi.1	-	8	1674	c.1258C>T	c.(1258-1260)CGC>TGC	p.R420C	PTPRR_uc001swh.1_Missense_Mutation_p.R175C|PTPRR_uc009zrs.2_Missense_Mutation_p.R269C|PTPRR_uc010stq.1_Missense_Mutation_p.R308C|PTPRR_uc010str.1_Missense_Mutation_p.R269C	NM_002849	NP_002840	Q15256	PTPRR_HUMAN	protein tyrosine phosphatase, receptor type, R	420	Tyrosine-protein phosphatase.|Cytoplasmic (Potential).				in utero embryonic development	cell surface|Golgi apparatus|integral to membrane|nucleus|perinuclear region of cytoplasm|plasma membrane	protein kinase binding|transmembrane receptor protein tyrosine phosphatase activity			skin(2)|ovary(1)	3			GBM - Glioblastoma multiforme(2;5.67e-07)|Lung(24;0.00283)|OV - Ovarian serous cystadenocarcinoma(12;0.00578)|LUSC - Lung squamous cell carcinoma(43;0.132)	COAD - Colon adenocarcinoma(1;0.136)		GTCTTATAGCGATTTTTAGTT	0.224000													22	50					0	0	1	0	0
HAL	3034	broad.mit.edu	37	12	96387922	96387922	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:96387922G>A	uc001tem.1	-	5	654	c.357C>T	c.(355-357)GAC>GAT	p.D119D	HAL_uc009zti.1_RNA|HAL_uc010suw.1_5'UTR|HAL_uc010sux.1_Silent_p.D119D	NM_002108	NP_002099	P42357	HUTH_HUMAN	histidine ammonia-lyase	119					biosynthetic process|histidine catabolic process	cytosol	histidine ammonia-lyase activity			ovary(2)|skin(1)	3					L-Histidine(DB00117)	TGGTCAGACGGTCTCCATCTA	0.483000													54	247					0	0	1	0	0
UHRF1BP1L	23074	broad.mit.edu	37	12	100489541	100489541	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:100489541G>A	uc001tgq.2	-	7	973	c.744C>T	c.(742-744)TCC>TCT	p.S248S	UHRF1BP1L_uc001tgr.2_Silent_p.S248S|UHRF1BP1L_uc001tgp.2_5'Flank	NM_015054	NP_055869	A0JNW5	UH1BL_HUMAN	UHRF1 (ICBP90) binding protein 1-like isoform a	248										ovary(2)	2						CTTTCAACTGGGAATCAGTCA	0.338000													12	23					0	0	1	0	0
HCFC2	29915	broad.mit.edu	37	12	104492131	104492131	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:104492131C>T	uc001tkj.3	+	13	1854	c.1751C>T	c.(1750-1752)CCT>CTT	p.P584L	HCFC2_uc009zul.2_RNA	NM_013320	NP_037452	Q9Y5Z7	HCFC2_HUMAN	host cell factor C2	584	Fibronectin type-III 2.				regulation of transcription from RNA polymerase II promoter|viral reproduction	cytoplasm|nucleus	transcription coactivator activity			ovary(2)|central_nervous_system(1)	3						AAAGAGACTCCTTCAAATCCA	0.343000													15	15					0	0	1	0	0
C12orf45	121053	broad.mit.edu	37	12	105380177	105380177	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:105380177C>T	uc001tlb.2	+	1	80	c.47C>T	c.(46-48)CCC>CTC	p.P16L		NM_152318	NP_689531	Q8N5I9	CL045_HUMAN	hypothetical protein LOC121053	16											0						TGTTCGTCGCCCACCCGGGAT	0.657000													14	9					0	0	1	0	0
DAO	1610	broad.mit.edu	37	12	109292466	109292466	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:109292466T>C	uc001tnr.3	+	9	860	c.707T>C	c.(706-708)GTT>GCT	p.V236A	DAO_uc001tnq.3_Missense_Mutation_p.V170A|DAO_uc009zvb.2_RNA|DAO_uc001tns.3_RNA	NM_001917	NP_001908	P14920	OXDA_HUMAN	D-amino-acid oxidase	236					glyoxylate metabolic process	peroxisomal matrix	binding|D-amino-acid oxidase activity			ovary(1)|skin(1)	2						ACCCAGACAGTTACTCTTGGA	0.473000													33	111					0	0	1	0	0
MYO1H	283446	broad.mit.edu	37	12	109848541	109848541	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:109848541G>A	uc010sxn.1	+	12	1330	c.1330G>A	c.(1330-1332)GAA>AAA	p.E444K		NM_001101421	NP_001094891	Q8N1T3	MYO1H_HUMAN	myosin 1H	Error:Variant_position_missing_in_B4DNW6_after_alignment						myosin complex	motor activity				0						TGATTTGGTAGAAGAGAGACA	0.348000													7	10					0	0	1	0	0
GIT2	9815	broad.mit.edu	37	12	110418775	110418775	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:110418775G>T	uc001tps.2	-	7	865	c.700C>A	c.(700-702)CTC>ATC	p.L234I	GIT2_uc001tpq.2_Missense_Mutation_p.L234I|GIT2_uc001tpv.2_Missense_Mutation_p.L234I|GIT2_uc001tpu.2_Missense_Mutation_p.L234I|GIT2_uc001tpt.2_Missense_Mutation_p.L234I|GIT2_uc010sxu.1_Missense_Mutation_p.L172I|GIT2_uc001tpw.2_Missense_Mutation_p.L234I|GIT2_uc010sxv.1_Missense_Mutation_p.L234I	NM_057169	NP_476510	Q14161	GIT2_HUMAN	G protein-coupled receptor kinase interacting	234					regulation of ARF GTPase activity|regulation of G-protein coupled receptor protein signaling pathway	nucleoplasm	ARF GTPase activator activity|protein binding|zinc ion binding			central_nervous_system(1)	1						CTGCCACAGAGATAGAAGGCT	0.473000													142	256					1.01623e-67	1.05504e-67	1	1	0
HVCN1	84329	broad.mit.edu	37	12	111089079	111089079	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:111089079C>G	uc001trs.1	-	6	751	c.586G>C	c.(586-588)GAG>CAG	p.E196Q	HVCN1_uc001trq.1_Missense_Mutation_p.E196Q|HVCN1_uc001trt.1_Missense_Mutation_p.E196Q|HVCN1_uc010syd.1_Missense_Mutation_p.E176Q	NM_032369	NP_115745	Q96D96	HVCN1_HUMAN	hydrogen voltage-gated channel 1	196	Extracellular (Potential).				response to pH|response to zinc ion	integral to membrane	voltage-gated proton channel activity			skin(1)	1						CCCAGAGCCTCAAACTGGTGC	0.582000													9	51					0	0	1	0	0
MAPKAPK5	8550	broad.mit.edu	37	12	112305454	112305454	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:112305454C>T	uc001tta.2	+	4	524	c.265C>T	c.(265-267)CCC>TCC	p.P89S	MAPKAPK5_uc001tsz.2_Missense_Mutation_p.P89S|MAPKAPK5_uc001ttb.2_Missense_Mutation_p.P22S	NM_139078	NP_620777	Q8IW41	MAPK5_HUMAN	MAP kinase-activated protein kinase 5 isoform 2	89	Protein kinase.				signal transduction	cytoplasm|nucleus	ATP binding|MAP kinase kinase activity|protein binding|protein serine/threonine kinase activity			lung(2)|ovary(1)	3						TGTCCAGTTTCCCCATGAGTC	0.453000													55	239					0	0	1	0	0
RPH3A	22895	broad.mit.edu	37	12	113333614	113333614	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:113333614G>A	uc010syl.1	+	21	2252	c.1890G>A	c.(1888-1890)CTG>CTA	p.L630L	RPH3A_uc001ttz.2_Silent_p.L630L|RPH3A_uc001tty.2_Silent_p.L626L|RPH3A_uc010sym.1_Silent_p.L581L|RPH3A_uc001tua.2_Silent_p.L390L	NM_001143854	NP_001137326	Q9Y2J0	RP3A_HUMAN	rabphilin 3A homolog isoform 1	630	C2 2.				intracellular protein transport	cell junction|synaptic vesicle	Rab GTPase binding|transporter activity|zinc ion binding			ovary(3)|central_nervous_system(2)|skin(2)	7				BRCA - Breast invasive adenocarcinoma(302;0.00453)		ACAGTGACCTGGCAAAGAAGT	0.473000													28	54					0	0	1	0	0
MED13L	23389	broad.mit.edu	37	12	116675502	116675502	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:116675502G>A	uc001tvw.2	-	2	136	c.81C>T	c.(79-81)CTC>CTT	p.L27L		NM_015335	NP_056150	Q71F56	MD13L_HUMAN	mediator complex subunit 13-like	27					regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent					skin(4)|ovary(2)|upper_aerodigestive_tract(1)|lung(1)	8	all_neural(191;0.117)|Medulloblastoma(191;0.163)			BRCA - Breast invasive adenocarcinoma(302;0.0407)		TGATTCCCGTGAGTTCAGCCT	0.398000													16	53					0	0	1	0	0
SRRM4	84530	broad.mit.edu	37	12	119588973	119588973	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:119588973C>T	uc001txa.1	+	10	1520	c.1228C>T	c.(1228-1230)CCC>TCC	p.P410S		NM_194286	NP_919262	A7MD48	SRRM4_HUMAN	KIAA1853 protein	410	Ser-rich.				cell differentiation|mRNA processing|nervous system development|regulation of RNA splicing|RNA splicing	nucleus	mRNA binding			ovary(2)	2						ATCCCCAAATCCCAGGGCTTC	0.572000													47	100					0	0	1	0	0
KNTC1	9735	broad.mit.edu	37	12	123028725	123028725	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:123028725C>T	uc001ucv.2	+	8	741	c.578C>T	c.(577-579)TCC>TTC	p.S193F	KNTC1_uc010taf.1_Intron	NM_014708	NP_055523	P50748	KNTC1_HUMAN	Rough Deal homolog, centromere/kinetochore	193					cell division|mitotic cell cycle checkpoint|mitotic prometaphase|protein complex assembly|regulation of exit from mitosis	condensed chromosome kinetochore|cytosol|kinetochore microtubule|nucleus|spindle pole	protein binding			ovary(5)|kidney(3)|lung(1)|central_nervous_system(1)	10	all_neural(191;0.0837)|Medulloblastoma(191;0.163)			OV - Ovarian serous cystadenocarcinoma(86;7.21e-05)|Epithelial(86;0.000178)|BRCA - Breast invasive adenocarcinoma(302;0.217)		CAAATCAAGTCCAGTTTTATT	0.308000													30	48					0	0	1	0	0
POLE	5426	broad.mit.edu	37	12	133219876	133219876	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:133219876G>A	uc001uks.1	-	35	4529	c.4485C>T	c.(4483-4485)GCC>GCT	p.A1495A	POLE_uc001ukq.1_5'Flank|POLE_uc001ukr.1_Silent_p.A299A|POLE_uc010tbq.1_RNA|POLE_uc009zyu.1_Silent_p.A1468A	NM_006231	NP_006222	Q07864	DPOE1_HUMAN	DNA-directed DNA polymerase epsilon	1495					base-excision repair, gap-filling|DNA synthesis involved in DNA repair|DNA-dependent DNA replication initiation|G1/S transition of mitotic cell cycle|M/G1 transition of mitotic cell cycle|nucleotide-excision repair, DNA gap filling|S phase of mitotic cell cycle|telomere maintenance via recombination|telomere maintenance via semi-conservative replication|transcription-coupled nucleotide-excision repair	nucleoplasm	chromatin binding|DNA binding|DNA-directed DNA polymerase activity|nucleotide binding|protein binding|zinc ion binding			ovary(3)|skin(3)|lung(1)|central_nervous_system(1)	8	all_neural(191;0.0982)|Medulloblastoma(191;0.163)	all_epithelial(31;0.0416)		OV - Ovarian serous cystadenocarcinoma(86;5.22e-08)|Epithelial(86;4.03e-07)|all cancers(50;1.18e-05)		GCGCTTTGTGGGCCTGTGCGT	0.597000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					20	77					0	0	1	0	0
SACS	26278	broad.mit.edu	37	13	23911333	23911333	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:23911333C>A	uc001uon.2	-	10	7271	c.6682G>T	c.(6682-6684)GAC>TAC	p.D2228Y	SACS_uc001uoo.2_Missense_Mutation_p.D2081Y|SACS_uc001uop.1_Intron|SACS_uc001uoq.1_Intron	NM_014363	NP_055178	Q9NZJ4	SACS_HUMAN	sacsin	2228					cell death|negative regulation of inclusion body assembly|protein folding	axon|cell body fiber|dendrite|mitochondrion|nucleus	ATP binding|chaperone binding|Hsp70 protein binding|proteasome binding			ovary(7)|skin(2)|upper_aerodigestive_tract(1)|large_intestine(1)|pancreas(1)	12		all_cancers(29;1.51e-22)|all_epithelial(30;7.82e-19)|all_lung(29;4.71e-18)|Lung SC(185;0.0225)|Breast(139;0.128)		all cancers(112;0.00197)|Epithelial(112;0.00854)|OV - Ovarian serous cystadenocarcinoma(117;0.0298)|Lung(94;0.189)		CCTTTCCAGTCCAAAGAAAAA	0.378000													19	17					2.37509e-13	2.43384e-13	1	1	0
FLT1	2321	broad.mit.edu	37	13	28903799	28903799	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:28903799T>A	uc001usb.3	-	19	2945	c.2660A>T	c.(2659-2661)CAC>CTC	p.H887L	FLT1_uc010aaq.2_Missense_Mutation_p.H12L|FLT1_uc001usa.3_Missense_Mutation_p.H105L	NM_002019	NP_002010	P17948	VGFR1_HUMAN	fms-related tyrosine kinase 1 isoform 1	887	Cytoplasmic (Potential).|Protein kinase.				cell differentiation|female pregnancy|positive regulation of vascular endothelial growth factor receptor signaling pathway	extracellular space|Golgi apparatus|integral to plasma membrane|nucleus	ATP binding|growth factor binding|vascular endothelial growth factor receptor activity			lung(10)|central_nervous_system(5)|ovary(3)|stomach(2)|skin(2)|urinary_tract(1)|breast(1)	24	Acute lymphoblastic leukemia(6;0.04)	Lung SC(185;0.0262)|Breast(139;0.188)	Colorectal(13;0.000674)	all cancers(112;0.0301)|Epithelial(112;0.155)|GBM - Glioblastoma multiforme(144;0.184)|OV - Ovarian serous cystadenocarcinoma(117;0.205)|Lung(94;0.207)	Sunitinib(DB01268)	GTTCAGATGGTGGCCAATGTG	0.582000													17	29					0	0	1	0	0
SERPINE3	647174	broad.mit.edu	37	13	51918395	51918395	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:51918395G>A	uc001vfh.2	+	2	324	c.264G>A	c.(262-264)AGG>AGA	p.R88R	SERPINE3_uc010tgp.1_Silent_p.R88R	NM_001101320	NP_001094790	A8MV23	SERP3_HUMAN	nexin-related serine protease inhibitor	88					regulation of proteolysis	extracellular region	serine-type endopeptidase inhibitor activity			ovary(2)	2						CAGACAAAAGGGTGAAAGATT	0.493000													16	10					0	0	1	0	0
PCDH17	27253	broad.mit.edu	37	13	58209070	58209070	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:58209070A>T	uc001vhq.1	+	1	3282	c.2390A>T	c.(2389-2391)TAC>TTC	p.Y797F	PCDH17_uc010aec.1_Missense_Mutation_p.Y797F	NM_001040429	NP_001035519	O14917	PCD17_HUMAN	protocadherin 17 precursor	797	Cytoplasmic (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding|protein binding			ovary(3)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	7		Lung NSC(96;0.027)|Prostate(109;0.0453)|Breast(118;0.128)|Hepatocellular(98;0.132)		GBM - Glioblastoma multiforme(99;1.06e-05)		TCCCCCATGTACTTCGACTAC	0.602000													7	24					0	0	1	0	0
KLHL1	57626	broad.mit.edu	37	13	70281853	70281853	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:70281853G>A	uc001vip.2	-	10	2885	c.2091C>T	c.(2089-2091)CTC>CTT	p.L697L	KLHL1_uc010thm.1_Silent_p.L636L	NM_020866	NP_065917	Q9NR64	KLHL1_HUMAN	kelch-like 1 protein	697	Kelch 5.				actin cytoskeleton organization	cytoplasm|cytoskeleton	actin binding				0		Breast(118;0.000162)		COAD - Colon adenocarcinoma(199;0.000193)|GBM - Glioblastoma multiforme(99;0.000211)		TGTCACCAAGGAGACAGACCC	0.433000													39	47					0	0	1	0	0
LMO7	4008	broad.mit.edu	37	13	76427269	76427269	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:76427269C>T	uc001vjv.2	+	25	4467	c.3707C>T	c.(3706-3708)TCT>TTT	p.S1236F	LMO7_uc010thv.1_Missense_Mutation_p.S1187F|LMO7_uc010thw.1_Missense_Mutation_p.S1113F	NM_015842	NP_056667	Q8WWI1	LMO7_HUMAN	LIM domain only 7 isoform 2	1521						cytoplasm|nucleus|ubiquitin ligase complex	ubiquitin-protein ligase activity|zinc ion binding			large_intestine(2)|ovary(1)|prostate(1)|skin(1)	5		Breast(118;0.0992)		GBM - Glioblastoma multiforme(99;0.0109)		CGATCCAATTCTTGGAGACAG	0.448000													8	56					0	0	1	0	0
SCEL	8796	broad.mit.edu	37	13	78208580	78208580	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:78208580G>A	uc001vki.2	+	29	1928	c.1758G>A	c.(1756-1758)GAG>GAA	p.E586E	SCEL_uc001vkj.2_Silent_p.E566E|SCEL_uc010thx.1_Silent_p.E544E	NM_144777	NP_659001	O95171	SCEL_HUMAN	sciellin isoform 1	586					embryo development|keratinocyte differentiation	cornified envelope|cytoplasm|membrane	protein binding|zinc ion binding			ovary(4)|breast(1)	5		Acute lymphoblastic leukemia(28;0.0282)|Breast(118;0.037)		GBM - Glioblastoma multiforme(99;0.0233)		CATATGTGGAGAATAGGTATT	0.328000													19	27					0	0	1	0	0
GPC5	2262	broad.mit.edu	37	13	92380915	92380915	+	Silent	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:92380915A>C	uc010tif.1	+	4	1516	c.1150A>C	c.(1150-1152)AGA>CGA	p.R384R		NM_004466	NP_004457	P78333	GPC5_HUMAN	glypican 5 precursor	384						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding			ovary(2)|skin(2)|upper_aerodigestive_tract(1)	5	all_cancers(3;1.43e-07)|all_neural(89;0.0804)|Medulloblastoma(90;0.163)	Lung NSC(4;0.00454)				TGCCAACAGAAGAAAGTAAGA	0.363000													24	57					0	0	1	0	0
GPC6	10082	broad.mit.edu	37	13	94482702	94482702	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:94482702G>A	uc001vlt.2	+	3	1247	c.615G>A	c.(613-615)CGG>CGA	p.R205R	GPC6_uc010tig.1_Silent_p.R205R|GPC6_uc001vlu.1_Silent_p.R135R	NM_005708	NP_005699	Q9Y625	GPC6_HUMAN	glypican 6 precursor	205						anchored to membrane|extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding				0	all_neural(89;0.0684)|Medulloblastoma(90;0.163)	all_cancers(2;5.48e-07)|all_epithelial(2;5.69e-08)|all_lung(2;2.19e-05)|Lung NSC(4;6.09e-05)|Breast(118;0.0395)|Renal(2;0.0568)|Hepatocellular(115;0.217)				ACGTGCCCCGGAAACTGAAGA	0.502000													16	47					0	0	1	0	0
FARP1	10160	broad.mit.edu	37	13	98865545	98865545	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:98865545C>T	uc001vnj.2	+	2	385	c.49C>T	c.(49-51)CCG>TCG	p.P17S	FARP1_uc001vnh.2_Missense_Mutation_p.P17S|FARP1_uc001vni.2_Missense_Mutation_p.P17S	NM_005766	NP_005757	Q9Y4F1	FARP1_HUMAN	FERM, RhoGEF, and pleckstrin domain protein 1	17					regulation of Rho protein signal transduction	cytoplasm|cytoskeleton|extrinsic to membrane	cytoskeletal protein binding|Rho guanyl-nucleotide exchange factor activity			breast(2)	2	all_neural(89;0.0982)|Medulloblastoma(90;0.163)|Lung SC(71;0.184)		BRCA - Breast invasive adenocarcinoma(86;0.233)			ACTGGGGGCCCCGGAAAATTC	0.522000													81	56					0	0	1	0	0
SLC10A2	6555	broad.mit.edu	37	13	103701770	103701770	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:103701770C>A	uc001vpy.3	-	5	1385	c.788G>T	c.(787-789)GGG>GTG	p.G263V		NM_000452	NP_000443	Q12908	NTCP2_HUMAN	solute carrier family 10 (sodium/bile acid	263	Extracellular (Potential).				bile acid metabolic process|organic anion transport	integral to plasma membrane	bile acid:sodium symporter activity			ovary(3)|skin(1)	4	all_neural(89;0.0662)|Medulloblastoma(90;0.163)|Lung SC(71;0.211)					GTTCTGCATCCCCGTTTCAAA	0.423000													28	30					1.99505e-19	2.05651e-19	1	1	0
FAM70B	348013	broad.mit.edu	37	13	114502332	114502332	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr13:114502332G>A	uc001vuh.2	+	5	390	c.363G>A	c.(361-363)ACG>ACA	p.T121T		NM_182614	NP_872420	Q8WV15	FA70B_HUMAN	family with sequence similarity 70, member B	121						integral to membrane					0	Lung NSC(43;0.00976)|all_neural(89;0.0337)|Hepatocellular(20;0.0877)|Medulloblastoma(90;0.163)|Lung SC(71;0.218)	all_lung(25;0.123)|all_epithelial(44;0.133)	all cancers(43;0.181)			CCCTCACCACGGGAAGATGCC	0.537000													28	25					0	0	1	0	0
OR11G2	390439	broad.mit.edu	37	14	20666354	20666354	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:20666354C>T	uc010tlb.1	+	1	860	c.860C>T	c.(859-861)TCA>TTA	p.S287L		NM_001005503	NP_001005503	Q8NGC1	O11G2_HUMAN	olfactory receptor, family 11, subfamily G,	287	Helical; Name=6; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)|skin(1)	2	all_cancers(95;0.00108)		Epithelial(56;9.76e-07)|all cancers(55;5.61e-06)	GBM - Glioblastoma multiforme(265;0.0144)		GCTGTGGTTTCACTGTTCTAC	0.378000													74	75					0	0	1	0	0
LRRC16B	90668	broad.mit.edu	37	14	24524988	24524988	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:24524988G>A	uc001wlj.2	+	10	917	c.760G>A	c.(760-762)GGG>AGG	p.G254R		NM_138360	NP_612369	Q8ND23	LR16B_HUMAN	leucine rich repeat containing 16B	254	LRR 1.									ovary(2)|breast(2)|pancreas(1)	5				GBM - Glioblastoma multiforme(265;0.019)		GGACAACGCCGGGCTTAAGAC	0.448000													24	26					0	0	1	0	0
NEDD8	4738	broad.mit.edu	37	14	24701578	24701578	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:24701578C>T	uc001wnn.2	-	1	1	c.-102_splice	c.e1-1		NEDD8_uc001wno.2_Splice_Site|NEDD8_uc001wnp.2_Splice_Site|GMPR2_uc001wnq.1_5'Flank|GMPR2_uc001wnv.2_5'Flank|GMPR2_uc001wnr.2_5'Flank|GMPR2_uc001wns.2_5'Flank|GMPR2_uc001wnt.2_5'Flank|GMPR2_uc001wnu.2_5'Flank|GMPR2_uc001wnw.2_5'Flank|GMPR2_uc010all.2_5'Flank|GMPR2_uc001wnx.2_5'Flank|GMPR2_uc010tod.1_5'Flank|GMPR2_uc010alk.1_5'Flank|GMPR2_uc010toe.1_5'Flank	NM_006156	NP_006147	Q15843	NEDD8_HUMAN	neural precursor cell expressed, developmentally						anatomical structure morphogenesis|protein neddylation|ubiquitin-dependent protein catabolic process	nucleus	ubiquitin protein ligase binding				0				GBM - Glioblastoma multiforme(265;0.0186)		ACTTCTACTTCCGGGTCACTG	0.627000													3	5					0	0	1	0	0
PYGL	5836	broad.mit.edu	37	14	51398425	51398425	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:51398425C>T	uc001wyu.2	-	4	621	c.494G>A	c.(493-495)GGG>GAG	p.G165E	PYGL_uc010tqq.1_Missense_Mutation_p.G131E|PYGL_uc001wyv.2_5'UTR|PYGL_uc001wyw.3_Missense_Mutation_p.G165E	NM_002863	NP_002854	P06737	PYGL_HUMAN	liver glycogen phosphorylase isoform 1	165					glucose homeostasis|glucose metabolic process|glycogen catabolic process	cytosol|soluble fraction	AMP binding|ATP binding|bile acid binding|drug binding|glucose binding|glycogen phosphorylase activity|protein homodimerization activity|purine base binding|pyridoxal phosphate binding			skin(1)	1	all_epithelial(31;0.00825)|Breast(41;0.148)				Adenosine monophosphate(DB00131)|Pyridoxal Phosphate(DB00114)|Riboflavin(DB00140)	ATTGAAAATCCCATATTCATA	0.438000													50	59					0	0	1	0	0
SYNE2	23224	broad.mit.edu	37	14	64519574	64519574	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:64519574C>T	uc001xgm.2	+	48	9173	c.8943C>T	c.(8941-8943)ATC>ATT	p.I2981I	SYNE2_uc001xgl.2_Silent_p.I2981I	NM_015180	NP_055995	Q8WXH0	SYNE2_HUMAN	spectrin repeat containing, nuclear envelope 2	2981	Cytoplasmic (Potential).				centrosome localization|cytoskeletal anchoring at nuclear membrane|nuclear migration along microfilament|positive regulation of cell migration	cytoskeleton|filopodium membrane|focal adhesion|integral to membrane|lamellipodium membrane|mitochondrial part|nuclear outer membrane|nucleoplasm|sarcoplasmic reticulum membrane|SUN-KASH complex|Z disc	actin binding|protein binding			ovary(8)|breast(4)|central_nervous_system(1)|pancreas(1)	14				all cancers(60;0.00153)|OV - Ovarian serous cystadenocarcinoma(108;0.00444)|BRCA - Breast invasive adenocarcinoma(234;0.0681)		AAGAGGAGATCTATAATCTTA	0.348000													22	20					0	0	1	0	0
C14orf115	55237	broad.mit.edu	37	14	74824855	74824855	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:74824855T>C	uc001xpw.3	+	2	1560	c.1369T>C	c.(1369-1371)TCT>CCT	p.S457P		NM_018228	NP_060698	Q9H8Y1	VRTN_HUMAN	hypothetical protein LOC55237	457					transposition, DNA-mediated		DNA binding|transposase activity				0				BRCA - Breast invasive adenocarcinoma(234;0.00147)		ACCAGCCCTCTCTGCTGCTGG	0.592000													40	35					0	0	1	0	0
SPATA7	55812	broad.mit.edu	37	14	88892890	88892890	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:88892890T>A	uc001xwq.2	+	6	838	c.687T>A	c.(685-687)CAT>CAA	p.H229Q	SPATA7_uc001xwr.2_Missense_Mutation_p.H197Q|SPATA7_uc001xws.2_Missense_Mutation_p.H165Q|SPATA7_uc001xwt.2_Missense_Mutation_p.H123Q|SPATA7_uc001xwu.2_5'Flank	NM_018418	NP_060888	Q9P0W8	SPAT7_HUMAN	spermatogenesis-associated protein 7 isoform a	229					response to stimulus|visual perception					ovary(1)	1						TGGATAAACATTCTGAACTCT	0.433000													46	50					0	0	1	0	0
TRAF3	7187	broad.mit.edu	37	14	103363602	103363602	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:103363602C>T	uc001ymc.1	+	10	1177	c.824C>T	c.(823-825)TCC>TTC	p.S275F	TRAF3_uc001yme.1_Missense_Mutation_p.S250F|TRAF3_uc001ymd.1_Missense_Mutation_p.S275F|TRAF3_uc010txy.1_Missense_Mutation_p.S192F	NM_145725	NP_663777	Q13114	TRAF3_HUMAN	TNF receptor-associated factor 3 isoform 1	275	Potential.				apoptosis|induction of apoptosis|negative regulation of NF-kappaB transcription factor activity|negative regulation of type I interferon production|regulation of defense response to virus|regulation of interferon-beta production|regulation of proteolysis|toll-like receptor signaling pathway|tumor necrosis factor-mediated signaling pathway	CD40 receptor complex|cytosol|endosome|internal side of plasma membrane|mitochondrion	signal transducer activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(1)|lung(1)|breast(1)	3		all_cancers(154;7.87e-06)|all_epithelial(191;0.0024)		Epithelial(152;9.92e-24)|all cancers(159;2.23e-21)|OV - Ovarian serous cystadenocarcinoma(161;7.85e-12)|Colorectal(3;0.0971)		TTTTAGGTTTCCTTGTTGCAG	0.274000													5	4					0	0	1	0	0
ADAM6	8755	broad.mit.edu	37	14	106236639	106236639	+	RNA	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:106236639G>T	uc010tyt.1	-	3614		c.57566C>A			uc001yrs.2_Intron|uc001yrt.2_Intron|uc001yrw.1_Intron|uc001yrx.1_Intron|uc001yrz.1_Intron|uc001yse.2_Intron|uc001ysf.2_Intron|uc001ysh.1_RNA|uc001ysi.1_RNA					Parts of antibodies, mostly variable regions.												0						CCTGGGCACCGTGGGCATGGG	0.642000													6	240					0.00307968	0.00309748	1	1	0
Unknown	0	broad.mit.edu	37	15	20649560	20649560	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:20649560C>T	uc001ytg.2	-	18	2658	c.1949G>A	c.(1948-1950)GGA>GAA	p.G650E	uc010tyx.1_RNA|uc001yth.3_Missense_Mutation_p.G650E|uc010tyy.1_Missense_Mutation_p.G650E					RecName: Full=Putative HERC2-like protein 3;																		GTCGTAATTTCCTTCTTTCCC	0.592000													51	106					0	0	1	0	0
CXADRP2	646243	broad.mit.edu	37	15	22016474	22016474	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:22016474C>T	uc010tzk.1	-	1	405	c.243G>A	c.(241-243)ACG>ACA	p.T81T		NR_024387				RecName: Full=Coxsackievirus and adenovirus receptor; AltName: Full=Coxsackievirus B-adenovirus receptor; AltName: Full=HCVADR;          Short=hCAR; AltName: Full=CVB3-binding protein; Flags: Precursor;												0						GCTGAAAATTCGTTACATTTA	0.388000													7	33					0	0	1	0	0
OR4M2	390538	broad.mit.edu	37	15	22368697	22368697	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:22368697G>A	uc010tzu.1	+	1	122	c.122G>A	c.(121-123)GGA>GAA	p.G41E	LOC727924_uc001yua.2_Intron|LOC727924_uc001yub.1_Intron|OR4N4_uc001yuc.1_Intron	NM_001004719	NP_001004719	Q8NGB6	OR4M2_HUMAN	olfactory receptor, family 4, subfamily M,	41	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(1)	1		all_cancers(20;1.94e-20)|all_epithelial(15;3.94e-18)|Lung NSC(15;8.53e-15)|all_lung(15;2.87e-14)|Breast(32;0.00519)|Colorectal(260;0.101)	GBM - Glioblastoma multiforme(6;0.124)	all cancers(64;1.64e-11)|Epithelial(43;5.81e-10)|BRCA - Breast invasive adenocarcinoma(123;0.000255)|Kidney(6;0.00736)|KIRC - Kidney renal clear cell carcinoma(6;0.0135)|GBM - Glioblastoma multiforme(186;0.0963)		ATCCTACCAGGAAATATCCTT	0.413000													105	637					0	0	1	0	0
RYR3	6263	broad.mit.edu	37	15	34040383	34040383	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:34040383G>A	uc001zhi.2	+	54	8128	c.8058G>A	c.(8056-8058)GTG>GTA	p.V2686V	RYR3_uc010bar.2_Silent_p.V2686V	NM_001036	NP_001027	Q15413	RYR3_HUMAN	ryanodine receptor 3	2686	3.|Cytoplasmic (By similarity).|4 X approximate repeats.				cellular calcium ion homeostasis	integral to membrane	calcium ion binding|receptor activity|ryanodine-sensitive calcium-release channel activity			ovary(5)|central_nervous_system(4)|lung(1)	10		all_lung(180;7.18e-09)		all cancers(64;8.95e-12)|GBM - Glioblastoma multiforme(186;0.00109)|BRCA - Breast invasive adenocarcinoma(123;0.0363)		GCTGGACTGTGGAGAGGACCA	0.527000													19	76					0	0	1	0	0
RPAP1	26015	broad.mit.edu	37	15	41816412	41816412	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:41816412G>A	uc001zod.2	-	16	2240	c.2116C>T	c.(2116-2118)CCG>TCG	p.P706S	RPAP1_uc001zoc.2_5'Flank	NM_015540	NP_056355	Q9BWH6	RPAP1_HUMAN	RNA polymerase II associated protein 1	706						nucleus	DNA binding|DNA-directed RNA polymerase activity			large_intestine(1)	1		all_cancers(109;6.59e-20)|all_epithelial(112;7.67e-17)|Lung NSC(122;5.34e-11)|all_lung(180;4.17e-10)|Melanoma(134;0.0179)|Ovarian(310;0.143)|Colorectal(260;0.173)		OV - Ovarian serous cystadenocarcinoma(18;2.84e-17)|GBM - Glioblastoma multiforme(113;1.68e-06)|Colorectal(105;0.0163)|BRCA - Breast invasive adenocarcinoma(123;0.117)		AGCTCCCGCGGCACCACCTGC	0.592000													38	47					0	0	1	0	0
MGA	23269	broad.mit.edu	37	15	41962150	41962150	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:41962150C>T	uc001zog.1	+	2	1149	c.1058C>T	c.(1057-1059)TCT>TTT	p.S353F	MGA_uc010ucy.1_Missense_Mutation_p.S353F|MGA_uc010ucz.1_Missense_Mutation_p.S353F	NM_001080541	NP_001074010	Q8IWI9	MGAP_HUMAN	MAX-interacting protein isoform 2	353						MLL1 complex	DNA binding|sequence-specific DNA binding transcription factor activity			ovary(6)|kidney(3)|upper_aerodigestive_tract(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	12		all_cancers(109;0.00356)|all_epithelial(112;0.0413)|all_lung(180;0.18)|Ovarian(310;0.238)		OV - Ovarian serous cystadenocarcinoma(18;1.41e-18)|GBM - Glioblastoma multiforme(113;2.15e-06)|COAD - Colon adenocarcinoma(120;0.031)|Lung(196;0.0721)|BRCA - Breast invasive adenocarcinoma(123;0.0964)|Colorectal(105;0.0998)|LUSC - Lung squamous cell carcinoma(244;0.235)		CAAGAGATTTCTGAATGGTAA	0.373000													6	18					0	0	1	0	0
ZFP106	64397	broad.mit.edu	37	15	42743008	42743008	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:42743008G>A	uc001zpw.2	-	2	1728	c.1393C>T	c.(1393-1395)CAA>TAA	p.Q465*	ZFP106_uc001zpu.2_5'Flank|ZFP106_uc001zpv.2_Intron|ZFP106_uc001zpx.2_Intron|ZFP106_uc010udh.1_Nonsense_Mutation_p.Q248*|ZFP106_uc001zpy.1_Nonsense_Mutation_p.Q488*	NM_022473	NP_071918	Q9H2Y7	ZF106_HUMAN	zinc finger protein 106 homolog	465						nucleolus	zinc ion binding			central_nervous_system(2)|ovary(1)	3		all_cancers(109;1.63e-12)|all_epithelial(112;3.97e-11)|Lung NSC(122;2.04e-07)|all_lung(180;8.31e-07)|Melanoma(134;0.091)		GBM - Glioblastoma multiforme(94;8.6e-07)		TCTTGCTTTTGAGACAATGAT	0.408000													44	195					0	0	1	0	0
TP53BP1	7158	broad.mit.edu	37	15	43738697	43738698	+	Missense_Mutation	DNP	TC	GT	GT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:43738697_43738698TC>GT	uc001zrs.2	-	14	3060_3061	c.2912_2913GA>AC	c.(2911-2913)GGA>GAC	p.G971D	TP53BP1_uc010udp.1_Missense_Mutation_p.G971D|TP53BP1_uc001zrq.3_Missense_Mutation_p.G976D|TP53BP1_uc001zrr.3_Missense_Mutation_p.G976D|TP53BP1_uc010udq.1_Missense_Mutation_p.G976D	NM_005657	NP_005648	Q12888	TP53B_HUMAN	tumor protein p53 binding protein 1 isoform 3	971					double-strand break repair via homologous recombination|positive regulation of transcription from RNA polymerase II promoter	condensed chromosome kinetochore|cytoplasm|nucleoplasm	p53 binding|RNA polymerase II activating transcription factor binding|RNA polymerase II transcription cofactor activity			ovary(2)|skin(2)|large_intestine(1)|pancreas(1)|kidney(1)	7		all_cancers(109;6.94e-11)|all_epithelial(112;2.69e-09)|Lung NSC(122;7.86e-07)|all_lung(180;7.84e-06)|Melanoma(134;0.0728)		GBM - Glioblastoma multiforme(94;1.59e-06)		AATCCCCTTTTCCACTCCCAAG	0.465000								Direct_reversal_of_damage|Other_conserved_DNA_damage_response_genes					25	119					0	0	1	0	0
ATP8B4	79895	broad.mit.edu	37	15	50171591	50171591	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:50171591G>A	uc001zxu.2	-	24	2905	c.2763C>T	c.(2761-2763)GCC>GCT	p.A921A	ATP8B4_uc010ber.2_Silent_p.A794A|ATP8B4_uc010ufd.1_Silent_p.A731A|ATP8B4_uc010ufe.1_RNA|ATP8B4_uc001zxt.2_5'Flank	NM_024837	NP_079113	Q8TF62	AT8B4_HUMAN	ATPase class I type 8B member 4	921	Helical; (Potential).				ATP biosynthetic process	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|magnesium ion binding|phospholipid-translocating ATPase activity			skin(3)|ovary(2)|breast(2)|large_intestine(1)	8		all_lung(180;0.00183)		all cancers(107;2.41e-07)|GBM - Glioblastoma multiforme(94;8.28e-05)		AAATCCCCATGGCTAAAACAG	0.323000													9	59					0	0	1	0	0
MYO5A	4644	broad.mit.edu	37	15	52720618	52720618	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:52720618G>A	uc002aby.2	-	3	531	c.287C>T	c.(286-288)TCC>TTC	p.S96F	MYO5A_uc002abx.3_Missense_Mutation_p.S96F|MYO5A_uc010uge.1_Intron	NM_000259	NP_000250	Q9Y4I1	MYO5A_HUMAN	myosin VA isoform 1	96	Myosin head-like.				actin filament-based movement|transport	cytoplasm|growth cone|myosin complex|ruffle	actin binding|ATP binding|calmodulin binding|microfilament motor activity			ovary(3)|central_nervous_system(1)	4				all cancers(107;0.0085)|Colorectal(133;0.077)|READ - Rectum adenocarcinoma(133;0.196)		AATAAGTTTGGAATCAATAAA	0.408000													20	103					0	0	1	0	0
UNC13C	440279	broad.mit.edu	37	15	54590048	54590048	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:54590048G>A	uc002ack.2	+	10	4028	c.4028G>A	c.(4027-4029)CGA>CAA	p.R1343Q	UNC13C_uc002acl.2_Missense_Mutation_p.R173Q	NM_001080534	NP_001074003	Q8NB66	UN13C_HUMAN	unc-13 homolog C	1343					exocytosis|intracellular signal transduction	cell junction|cytoplasm|presynaptic membrane	metal ion binding			ovary(5)|pancreas(2)	7				GBM - Glioblastoma multiforme(80;0.0789)|all cancers(107;0.124)		GGGGCCATACGATTGAAAATC	0.343000													7	17					0	0	1	0	0
TLN2	83660	broad.mit.edu	37	15	63046000	63046000	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:63046000C>T	uc002alb.3	+	33	4361	c.4361C>T	c.(4360-4362)CCA>CTA	p.P1454L	TLN2_uc002alc.3_5'UTR	NM_015059	NP_055874	Q9Y4G6	TLN2_HUMAN	talin 2	1454					cell adhesion|cell-cell junction assembly|cytoskeletal anchoring at plasma membrane	actin cytoskeleton|cytoplasm|focal adhesion|ruffle|synapse	actin binding|insulin receptor binding|structural constituent of cytoskeleton			ovary(5)|upper_aerodigestive_tract(2)|lung(2)|breast(2)	11						ATCTCTGATCCAAACAGCCAG	0.592000													19	64					0	0	1	0	0
DAPK2	23604	broad.mit.edu	37	15	64275881	64275881	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:64275881C>T	uc002amr.2	-	3	196	c.165G>A	c.(163-165)AAG>AAA	p.K55K	DAPK2_uc010uim.1_RNA|DAPK2_uc010bgu.1_Silent_p.K45K	NM_014326	NP_055141	Q9UIK4	DAPK2_HUMAN	death-associated kinase 2	55	Protein kinase.				apoptosis|induction of apoptosis|intracellular protein kinase cascade	cytoplasm	ATP binding|calmodulin binding|calmodulin-dependent protein kinase activity|identical protein binding			stomach(1)|central_nervous_system(1)	2				LUAD - Lung adenocarcinoma(2;0.215)		TCTGCCGCTTCTTGATGAACT	0.617000													11	55					0	0	1	0	0
MAP2K1	5604	broad.mit.edu	37	15	66729162	66729162	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:66729162C>T	uc010bhq.2	+	3	845	c.370C>T	c.(370-372)CCG>TCG	p.P124S	MAP2K1_uc010ujp.1_Missense_Mutation_p.P102S	NM_002755	NP_002746	Q02750	MP2K1_HUMAN	mitogen-activated protein kinase kinase 1	124	Protein kinase.				activation of MAPK activity|activation of MAPKK activity|axon guidance|cell cycle arrest|cellular senescence|epidermal growth factor receptor signaling pathway|innate immune response|insulin receptor signaling pathway|MyD88-dependent toll-like receptor signaling pathway|MyD88-independent toll-like receptor signaling pathway|negative regulation of cell proliferation|nerve growth factor receptor signaling pathway|Ras protein signal transduction|stress-activated MAPK cascade|Toll signaling pathway|toll-like receptor 1 signaling pathway|toll-like receptor 2 signaling pathway|toll-like receptor 3 signaling pathway|toll-like receptor 4 signaling pathway	cytosol|plasma membrane	ATP binding|MAP kinase kinase activity|protein serine/threonine kinase activity|protein tyrosine kinase activity				0						GTGCAACTCTCCGTACATCGT	0.507000									Cardiofaciocutaneous_syndrome				31	52					0	0	1	0	0
PIAS1	8554	broad.mit.edu	37	15	68457092	68457093	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:68457092_68457093CC>TT	uc002aqz.2	+	8	1054_1055	c.958_959CC>TT	c.(958-960)CCA>TTA	p.P320L		NM_016166	NP_057250	O75925	PIAS1_HUMAN	protein inhibitor of activated STAT, 1	320	SP-RING-type.				androgen receptor signaling pathway|interferon-gamma-mediated signaling pathway|JAK-STAT cascade|positive regulation of protein sumoylation|positive regulation of transcription, DNA-dependent|regulation of interferon-gamma-mediated signaling pathway|transcription, DNA-dependent	nuclear speck	androgen receptor binding|DNA binding|enzyme binding|SUMO ligase activity|transcription coactivator activity|transcription corepressor activity|zinc ion binding			ovary(1)|lung(1)	2						GACTGCGGATCCAGACAGTGAA	0.337000													12	12					0	0	1	0	0
HCN4	10021	broad.mit.edu	37	15	73614901	73614901	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:73614901G>A	uc002avp.2	-	8	4527	c.3533C>T	c.(3532-3534)CCC>CTC	p.P1178L		NM_005477	NP_005468	Q9Y3Q4	HCN4_HUMAN	hyperpolarization activated cyclic	1178	Cytoplasmic (Potential).				blood circulation|muscle contraction	integral to membrane	cAMP binding|protein binding|sodium channel activity|voltage-gated potassium channel activity			ovary(5)|liver(1)	6				COAD - Colon adenocarcinoma(1;0.142)		AGTCAGAGGGGGCCCCCCAGA	0.582000													5	11					0	0	1	0	0
CYP11A1	1583	broad.mit.edu	37	15	74631651	74631651	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:74631651T>G	uc002axt.2	-	7	1318	c.1163A>C	c.(1162-1164)CAC>CCC	p.H388P	CYP11A1_uc002axs.2_Missense_Mutation_p.H230P|CYP11A1_uc010bjm.1_Missense_Mutation_p.H230P|CYP11A1_uc010bjn.1_RNA|CYP11A1_uc010bjo.1_Intron|CYP11A1_uc010bjp.1_RNA	NM_000781	NP_000772	P05108	CP11A_HUMAN	cytochrome P450, family 11, subfamily A,	388					C21-steroid hormone biosynthetic process|cholesterol metabolic process|vitamin D metabolic process|xenobiotic metabolic process	mitochondrial matrix	cholesterol monooxygenase (side-chain-cleaving) activity|electron carrier activity|heme binding	p.H388Q(1)		ovary(2)	2					Aminoglutethimide(DB00357)|Cholecalciferol(DB00169)|Cimetidine(DB00501)|Clotrimazole(DB00257)|Digitoxin(DB01396)|Digoxin(DB00390)|Medroxyprogesterone(DB00603)|Ouabain(DB01092)|Progesterone(DB00396)|Testosterone(DB00624)|Trilostane(DB01108)	GGAGATGGGGTGAAGTCTGCG	0.582000													31	45					0	0	1	0	0
CYP1A1	1543	broad.mit.edu	37	15	75015174	75015175	+	Silent	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:75015174_75015175GG>AA	uc002ayp.3	-	2	386_387	c.264_265CC>TT	c.(262-267)GGCCTG>GGTTTG	p.88_89GL>GL	CYP1A1_uc010bjv.2_RNA|CYP1A1_uc010bjw.2_RNA|CYP1A1_uc010bju.2_Intron|CYP1A1_uc010bjx.2_Intron|CYP1A1_uc002ayq.3_Silent_p.88_89GL>GL|CYP1A1_uc010bjy.2_Silent_p.88_89GL>GL|CYP1A1_uc010bjz.1_Intron	NM_000499	NP_000490	P04798	CP1A1_HUMAN	cytochrome P450, family 1, subfamily A,	88_89					cellular lipid metabolic process|drug metabolic process|xenobiotic metabolic process	endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding|vitamin D 24-hydroxylase activity			ovary(2)|breast(2)|pancreas(1)	5					Arsenic trioxide(DB01169)|Benzphetamine(DB00865)|Bleomycin(DB00290)|Chlorzoxazone(DB00356)|Dacarbazine(DB00851)|Dactinomycin(DB00970)|Esomeprazole(DB00736)|Estrone(DB00655)|Fluvastatin(DB01095)|Fluvoxamine(DB00176)|Ginseng(DB01404)|Granisetron(DB00889)|Ketoconazole(DB01026)|Menadione(DB00170)|Picrotoxin(DB00466)|Primaquine(DB01087)|Quinidine(DB00908)|Quinine(DB00468)|Thiabendazole(DB00730)	ATGGTGTCCAGGCCGCTCAGCA	0.614000									Endometrial_Cancer_Familial_Clustering_of|ACTH-independent_macronodular_adrenal_hyperplasia				27	49					0	0	1	0	0
AP3B2	8120	broad.mit.edu	37	15	83333150	83333150	+	Missense_Mutation	SNP	C	T	T	rs3217363		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:83333150C>T	uc010uoh.1	-	18	2350	c.2173G>A	c.(2173-2175)GAG>AAG	p.E725K	AP3B2_uc010uoi.1_Missense_Mutation_p.E744K|AP3B2_uc010uoj.1_Missense_Mutation_p.E693K|AP3B2_uc010bmp.2_5'Flank|AP3B2_uc010uog.1_Missense_Mutation_p.E361K|AP3B2_uc002biy.1_5'Flank	NM_004644	NP_004635	Q13367	AP3B2_HUMAN	adaptor-related protein complex 3, beta 2	725	Glu/Ser-rich.				endocytosis|intracellular protein transport|post-Golgi vesicle-mediated transport	clathrin coated vesicle membrane|COPI-coated vesicle|membrane coat	binding|protein transporter activity			ovary(3)|breast(1)|pancreas(1)	5			BRCA - Breast invasive adenocarcinoma(143;0.229)			TCCTCATCCTCATCCTGGTCT	0.567000													31	74					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100332878	100332878	+	RNA	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:100332878G>A	uc010urx.1	-	5		c.1314C>T			C15orf51_uc010ury.1_RNA	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TGATGAGCCTGGTCCAGGAGC	0.622000													10	68					0	0	1	0	0
C15orf51	196968	broad.mit.edu	37	15	100339881	100339881	+	RNA	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:100339881G>A	uc010urx.1	-	4		c.1046C>T			C15orf51_uc010ury.1_RNA|uc002bvp.2_5'Flank|C15orf51_uc010urz.1_RNA|uc002bvq.2_5'Flank|uc002bvt.1_5'Flank	NR_003260				Homo sapiens cDNA FLJ43799 fis, clone TESTI4000288.												0						TGTGCTGACGGTGTTCGTGTT	0.652000													19	50					0	0	1	0	0
LMF1	64788	broad.mit.edu	37	16	920851	920851	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:920851C>T	uc002ckj.2	-	8	1114	c.1110G>A	c.(1108-1110)TCG>TCA	p.S370S	LMF1_uc010brg.2_5'Flank|LMF1_uc010brh.2_Silent_p.S153S|LMF1_uc010bri.2_Silent_p.S133S|LMF1_uc002ckk.2_Silent_p.S153S	NM_022773	NP_073610	Q96S06	LMF1_HUMAN	lipase maturation factor 1	370	Helical; (Potential).					endoplasmic reticulum membrane|integral to membrane					0		Hepatocellular(780;0.00308)				GGACGCCCAGCGAGACGTTGG	0.657000													4	28					0	0	1	0	0
SSTR5	6755	broad.mit.edu	37	16	1129540	1129540	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:1129540C>T	uc002ckq.2	+	1	760	c.672C>T	c.(670-672)ATC>ATT	p.I224I	LOC146336_uc002cko.2_5'Flank|LOC146336_uc002ckp.1_5'Flank	NM_001053	NP_001044	P35346	SSR5_HUMAN	somatostatin receptor 5	224	Cytoplasmic (Potential).				negative regulation of cell proliferation	integral to plasma membrane	somatostatin receptor activity			lung(1)	1		Hepatocellular(780;0.00369)			Octreotide(DB00104)	ACCTGCTCATCGTGGTGAAGG	0.687000													19	29					0	0	1	0	0
HN1L	90861	broad.mit.edu	37	16	1741881	1741881	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:1741881C>T	uc002cmg.2	+	3	267	c.231C>T	c.(229-231)CCC>CCT	p.P77P	HN1L_uc010uvi.1_Silent_p.P105P|HN1L_uc010brt.2_RNA|HN1L_uc010bru.2_Intron|HN1L_uc010uvj.1_Intron|HN1L_uc010uvk.1_Silent_p.P64P	NM_144570	NP_653171	Q9H910	HN1L_HUMAN	hematological and neurological expressed 1-like	77						cytoplasm|nucleus				upper_aerodigestive_tract(1)	1						AATCAACCCCCGTGCAGACTC	0.502000													28	80					0	0	1	0	0
SRRM2	23524	broad.mit.edu	37	16	2812215	2812216	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:2812215_2812216CC>TT	uc002crk.2	+	11	2235_2236	c.1686_1687CC>TT	c.(1684-1689)TCCCAC>TCTTAC	p.H563Y	SRRM2_uc002crj.1_Missense_Mutation_p.H467Y|SRRM2_uc002crl.1_Missense_Mutation_p.H563Y|SRRM2_uc010bsu.1_Missense_Mutation_p.H467Y	NM_016333	NP_057417	Q9UQ35	SRRM2_HUMAN	splicing coactivator subunit SRm300	563	Arg-rich.|Ser-rich.					Cajal body|catalytic step 2 spliceosome|nuclear speck	C2H2 zinc finger domain binding|protein N-terminus binding|RNA binding			ovary(1)|pancreas(1)|central_nervous_system(1)|skin(1)	4						GAGGGAGGTCCCACTCTAGATC	0.614000													18	22					0	0	1	0	0
OR1F1	4992	broad.mit.edu	37	16	3254832	3254832	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:3254832G>A	uc010uwu.1	+	1	586	c.586G>A	c.(586-588)GAG>AAG	p.E196K		NM_012360	NP_036492	O43749	OR1F1_HUMAN	olfactory receptor, family 1, subfamily F,	196	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity				0						ACACCTCAATGAGGTCATAAT	0.502000													26	100					0	0	1	0	0
GRIN2A	2903	broad.mit.edu	37	16	9857538	9857538	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:9857538C>T	uc002czo.3	-	13	4411	c.3863G>A	c.(3862-3864)CGT>CAT	p.R1288H	GRIN2A_uc010uym.1_Missense_Mutation_p.R1288H|GRIN2A_uc010uyn.1_Intron|GRIN2A_uc002czr.3_Intron	NM_001134407	NP_001127879	Q12879	NMDE1_HUMAN	N-methyl-D-aspartate receptor subunit 2A isoform	1288	Cytoplasmic (Potential).				response to ethanol	cell junction|N-methyl-D-aspartate selective glutamate receptor complex|outer membrane-bounded periplasmic space|postsynaptic membrane	N-methyl-D-aspartate selective glutamate receptor activity|zinc ion binding			skin(32)|NS(5)|ovary(4)|large_intestine(1)|lung(1)|breast(1)|kidney(1)	45					Felbamate(DB00949)|Glycine(DB00145)|L-Glutamic Acid(DB00142)|Loperamide(DB00836)|Memantine(DB01043)	GGAATGCTGACGGCTAATCCT	0.537000													16	72					0	0	1	0	0
EMP2	2013	broad.mit.edu	37	16	10641415	10641415	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:10641415G>A	uc002czx.2	-	2	254	c.60C>T	c.(58-60)TTC>TTT	p.F20F		NM_001424	NP_001415	P54851	EMP2_HUMAN	epithelial membrane protein 2	20	Helical; (Potential).			F -> L (in Ref. 3; CAA64393).	cell proliferation	integral to membrane					0						CGGTGGCAATGAACAGCAAGG	0.473000													15	64					0	0	1	0	0
CLEC16A	23274	broad.mit.edu	37	16	11272358	11272358	+	Silent	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:11272358T>A	uc002dao.2	+	24	3203	c.2973T>A	c.(2971-2973)ATT>ATA	p.I991I	CLEC16A_uc002dap.2_Silent_p.I78I	NM_015226	NP_056041	Q2KHT3	CL16A_HUMAN	C-type lectin domain family 16, member A	991										ovary(1)|central_nervous_system(1)	2						AGCCCACCATTTCCCTGCTCT	0.672000													32	138					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20974972	20974972	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:20974972G>A	uc010vbe.1	-	53	10234	c.10234C>T	c.(10234-10236)CCC>TCC	p.P3412S	DNAH3_uc010vbd.1_Missense_Mutation_p.P847S	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3412					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		AGCCATTGGGGAGCTGGATTG	0.527000													11	66					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	20976139	20976139	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:20976139G>A	uc010vbe.1	-	53	9067	c.9067C>T	c.(9067-9069)CAG>TAG	p.Q3023*	DNAH3_uc010vbd.1_Nonsense_Mutation_p.Q458*	NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	3023					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		GCCAACCACTGATTTTGGCAC	0.507000													19	39					0	0	1	0	0
DNAH3	55567	broad.mit.edu	37	16	21031159	21031159	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:21031159C>T	uc010vbe.1	-	41	5809	c.5809G>A	c.(5809-5811)GAA>AAA	p.E1937K		NM_017539	NP_060009	Q8TD57	DYH3_HUMAN	dynein, axonemal, heavy chain 3	1937					ciliary or flagellar motility|microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|microtubule motor activity			ovary(10)|skin(3)|large_intestine(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)	18				GBM - Glioblastoma multiforme(48;0.207)		TCACCTAATTCCATTTCCTCC	0.483000													18	72					0	0	1	0	0
PLK1	5347	broad.mit.edu	37	16	23695351	23695351	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:23695351C>T	uc002dlz.1	+	5	1030	c.977C>T	c.(976-978)TCG>TTG	p.S326L		NM_005030	NP_005021	P53350	PLK1_HUMAN	polo-like kinase 1	326					anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process|cell proliferation|G2/M transition DNA damage checkpoint|G2/M transition of mitotic cell cycle|mitotic metaphase/anaphase transition|mitotic prometaphase|mitotic prophase|negative regulation of cyclin-dependent protein kinase activity|peptidyl-serine phosphorylation|positive regulation of peptidyl-threonine phosphorylation|positive regulation of proteasomal ubiquitin-dependent protein catabolic process|positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle|protein destabilization|protein localization to chromatin|protein ubiquitination|regulation of mitotic anaphase|regulation of protein binding	centrosome|condensed nuclear chromosome outer kinetochore|cytosol|nucleoplasm|spindle microtubule|spindle midzone|spindle pole	anaphase-promoting complex binding|ATP binding|polo kinase kinase activity|protein kinase binding			lung(1)|skin(1)	2				GBM - Glioblastoma multiforme(48;0.0156)		CCAAGGTTTTCGATTGCTCCC	0.547000													45	146					0	0	1	0	0
IL4R	3566	broad.mit.edu	37	16	27363900	27363900	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:27363900C>T	uc002don.2	+	7	795	c.553C>T	c.(553-555)CGC>TGC	p.R185C	IL4R_uc002dom.2_Missense_Mutation_p.R185C|IL4R_uc002dop.3_Missense_Mutation_p.R170C|IL4R_uc010bxy.2_Missense_Mutation_p.R185C|IL4R_uc002doo.2_Missense_Mutation_p.R25C	NM_000418	NP_000409	P24394	IL4RA_HUMAN	interleukin 4 receptor alpha chain isoform a	185	Extracellular (Potential).|Fibronectin type-III.				immune response|production of molecular mediator involved in inflammatory response	integral to plasma membrane	identical protein binding|interleukin-4 receptor activity|receptor signaling protein activity			ovary(1)|skin(1)	2						ACCCTCCCTCCGCATCGCAGC	0.602000													67	91					0	0	1	0	0
XPO6	23214	broad.mit.edu	37	16	28137058	28137059	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:28137058_28137059CC>TT	uc002dpa.1	-	13	2218_2219	c.1717_1718GG>AA	c.(1717-1719)GGG>AAG	p.G573K	XPO6_uc002dpb.1_Missense_Mutation_p.G559K|XPO6_uc010vcp.1_Missense_Mutation_p.G573K	NM_015171	NP_055986	Q96QU8	XPO6_HUMAN	exportin 6	573					protein export from nucleus		protein binding|protein transporter activity			ovary(1)|skin(1)	2						AAACACATCCCCGATAAAGTAC	0.574000													62	119					0	0	1	0	0
SEPT1	1731	broad.mit.edu	37	16	30392692	30392692	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:30392692G>A	uc002dxy.2	-	6	595	c.408C>T	c.(406-408)TGC>TGT	p.C136C	SEPT1_uc002dxw.2_5'Flank|SEPT1_uc002dxx.2_5'UTR|SEPT1_uc010veq.1_Silent_p.C183C	NM_052838	NP_443070	Q8WYJ6	SEPT1_HUMAN	septin 1	136					cell cycle|cell division	microtubule organizing center|septin complex	GTP binding|protein binding			ovary(1)	1			Colorectal(24;0.193)			AGTAGAGGCAGCAGTGGACTC	0.612000													27	127					0	0	1	0	0
FBXL19	54620	broad.mit.edu	37	16	30941555	30941555	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:30941555G>A	uc002eab.2	+	7	1169	c.1011G>A	c.(1009-1011)TCG>TCA	p.S337S	FBXL19_uc002dzz.1_Silent_p.S25S|FBXL19_uc002eaa.1_Silent_p.S236S	NM_001099784	NP_001093254	Q6PCT2	FXL19_HUMAN	F-box and leucine-rich repeat protein 19	337	Ser-rich.						DNA binding|zinc ion binding			ovary(2)|lung(1)|breast(1)	4						CCGACTCTTCGGGCACATCGC	0.672000													21	85					0	0	1	0	0
ITGAD	3681	broad.mit.edu	37	16	31421776	31421776	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:31421776C>T	uc002ebv.1	+	11	1193	c.1144C>T	c.(1144-1146)CCC>TCC	p.P382S	ITGAD_uc010cap.1_Missense_Mutation_p.P382S	NM_005353	NP_005344	Q13349	ITAD_HUMAN	integrin, alpha D precursor	382	Extracellular (Potential).|FG-GAP 3.				cell-cell adhesion|cell-matrix adhesion|immune response|integrin-mediated signaling pathway	integrin complex	receptor activity			skin(1)	1						CTTCCTGTATCCCCCAAATAT	0.567000													63	103					0	0	1	0	0
ZNF423	23090	broad.mit.edu	37	16	49672234	49672234	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:49672234C>T	uc002efs.2	-	5	1127	c.829G>A	c.(829-831)GAG>AAG	p.E277K	ZNF423_uc010vgn.1_Missense_Mutation_p.E160K	NM_015069	NP_055884	Q2M1K9	ZN423_HUMAN	zinc finger protein 423	277	C2H2-type 6.				cell differentiation|negative regulation of transcription, DNA-dependent|nervous system development|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(1)|lung(1)|kidney(1)|pancreas(1)	4		all_cancers(37;0.0155)				TTCTCCAGCTCCTCCGTCTGG	0.582000													20	37					0	0	1	0	0
CHD9	80205	broad.mit.edu	37	16	53190854	53190854	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:53190854A>C	uc002ehb.2	+	1	1017	c.853A>C	c.(853-855)AGT>CGT	p.S285R	CHD9_uc002egy.2_Missense_Mutation_p.S285R|CHD9_uc002egz.1_Missense_Mutation_p.S285R|CHD9_uc002eha.1_Missense_Mutation_p.S285R|CHD9_uc002ehc.2_Missense_Mutation_p.S285R	NM_025134	NP_079410	Q3L8U1	CHD9_HUMAN	chromodomain helicase DNA binding protein 9	285	Ser-rich.				cellular lipid metabolic process|chromatin modification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleoplasm	ATP binding|DNA binding|helicase activity|protein binding			lung(2)|central_nervous_system(1)|breast(1)|skin(1)|ovary(1)|kidney(1)	7		all_cancers(37;0.0212)				ATCACCAAACAGTCTACTTCA	0.343000													24	119					0	0	1	0	0
IRX5	10265	broad.mit.edu	37	16	54966808	54966808	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:54966808C>T	uc002ehv.2	+	2	648	c.648C>T	c.(646-648)CCC>CCT	p.P216P	IRX5_uc010cca.1_Silent_p.P268P|IRX5_uc002ehw.2_Silent_p.P150P	NM_005853	NP_005844	P78411	IRX5_HUMAN	iroquois homeobox protein 5	216					response to stimulus|visual perception	nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|vitamin D binding				0						CCGAGGGCCCCGAAGCAGGTT	0.647000													46	72					0	0	1	0	0
GINS3	64785	broad.mit.edu	37	16	58437018	58437018	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:58437018T>C	uc002enh.3	+	2	411	c.203T>C	c.(202-204)CTA>CCA	p.L68P	GINS3_uc010cdj.2_Missense_Mutation_p.L107P|GINS3_uc002enj.3_Intron|GINS3_uc002eni.3_Missense_Mutation_p.L68P	NM_022770	NP_073607	Q9BRX5	PSF3_HUMAN	GINS complex subunit 3 isoform b	68					DNA replication	nucleus					0						AAGCTTGAACTACCCTTGTGG	0.453000													17	71					0	0	1	0	0
CDH8	1006	broad.mit.edu	37	16	61851400	61851400	+	Silent	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:61851400G>T	uc002eog.1	-	7	1512	c.1260C>A	c.(1258-1260)ATC>ATA	p.I420I	CDH8_uc002eoh.2_Silent_p.I189I	NM_001796	NP_001787	P55286	CADH8_HUMAN	cadherin 8, type 2 preproprotein	420	Extracellular (Potential).|Cadherin 4.				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			ovary(6)|skin(2)|breast(1)	9		Ovarian(137;0.0799)|Melanoma(118;0.16)		UCEC - Uterine corpus endometrioid carcinoma (183;0.196)|Epithelial(162;0.0155)|all cancers(182;0.0305)|OV - Ovarian serous cystadenocarcinoma(108;0.0499)|BRCA - Breast invasive adenocarcinoma(181;0.249)		GACTGGAAGTGATATCAGGGT	0.428000													12	51					0.000566183	0.000570115	1	1	0
C16orf70	80262	broad.mit.edu	37	16	67166422	67166422	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:67166422C>T	uc002erc.2	+	6	433	c.349C>T	c.(349-351)CCT>TCT	p.P117S	C16orf70_uc002erd.2_Missense_Mutation_p.P117S|C16orf70_uc002ere.1_Missense_Mutation_p.P95S	NM_025187	NP_079463	Q9BSU1	CP070_HUMAN	lin-10	117										ovary(2)	2		Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0017)|Epithelial(162;0.00655)|all cancers(182;0.0579)		CGCAACCCATCCTGGAGGTAA	0.463000													37	181					0	0	1	0	0
ELMO3	79767	broad.mit.edu	37	16	67233250	67233250	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:67233250G>A	uc002esa.2	+	1	223	c.180G>A	c.(178-180)GTG>GTA	p.V60V	ELMO3_uc002esb.2_Silent_p.V60V|ELMO3_uc002esc.2_5'Flank	NM_024712	NP_078988	Q96BJ8	ELMO3_HUMAN	engulfment and cell motility 3	7					apoptosis|phagocytosis	cytoplasm|cytoskeleton	SH3 domain binding				0		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.00067)|Epithelial(162;0.00442)|all cancers(182;0.0417)		CGCGGAACGTGGTGAAGATTG	0.687000													50	91					0	0	1	0	0
RLTPR	146206	broad.mit.edu	37	16	67682059	67682059	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:67682059G>A	uc002etn.2	+	14	1296	c.1176G>A	c.(1174-1176)TGG>TGA	p.W392*	RLTPR_uc010cel.1_Nonsense_Mutation_p.W392*|RLTPR_uc010vjr.1_Intron	NM_001013838	NP_001013860	Q6F5E8	LR16C_HUMAN	RGD motif, leucine rich repeats, tropomodulin	392										breast(1)	1		Acute lymphoblastic leukemia(13;3.23e-05)|all_hematologic(13;0.00251)|Ovarian(137;0.192)		OV - Ovarian serous cystadenocarcinoma(108;0.0146)|Epithelial(162;0.0481)|all cancers(182;0.232)		TGGGGGGATGGATGACCGGCA	0.672000													21	69					0	0	1	0	0
EDC4	23644	broad.mit.edu	37	16	67911493	67911493	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:67911493C>T	uc002eur.2	+	6	889	c.723C>T	c.(721-723)ATC>ATT	p.I241I	EDC4_uc010cer.2_5'UTR|EDC4_uc010vkg.1_Silent_p.I173I|EDC4_uc010ces.1_Silent_p.I84I|EDC4_uc002eus.2_5'UTR	NM_014329	NP_055144	Q6P2E9	EDC4_HUMAN	autoantigen RCD8	241	WD 2.				exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay	cytoplasmic mRNA processing body|cytosol|nucleus	protein binding			ovary(2)|central_nervous_system(2)	4		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0042)|Epithelial(162;0.0185)|all cancers(182;0.121)		GCCCCTTCATCCCTGAGGAGA	0.597000													23	135					0	0	1	0	0
DDX28	55794	broad.mit.edu	37	16	68056397	68056397	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:68056397G>A	uc002evh.1	-	1	1563	c.709C>T	c.(709-711)CTG>TTG	p.L237L	DUS2L_uc002evi.2_5'Flank|DUS2L_uc002evj.2_5'Flank|DUS2L_uc010vkk.1_5'Flank	NM_018380	NP_060850	Q9NUL7	DDX28_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 28	237	Helicase ATP-binding.					mitochondrial nucleoid|nucleus	ATP binding|ATP-dependent helicase activity|RNA binding			skin(1)	1		Ovarian(137;0.0563)		OV - Ovarian serous cystadenocarcinoma(108;0.0116)|Epithelial(162;0.0474)|all cancers(182;0.233)		CCTCCCTCCAGGTCCCGCACC	0.662000													8	41					0	0	1	0	0
HYDIN	54768	broad.mit.edu	37	16	71220684	71220684	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:71220684C>T	uc002ezr.2	-	2	243	c.115G>A	c.(115-117)GAA>AAA	p.E39K	HYDIN_uc010cfz.1_5'UTR|HYDIN_uc002ezv.2_Missense_Mutation_p.E39K|HYDIN_uc010vmc.1_Missense_Mutation_p.E56K|HYDIN_uc010vmd.1_Missense_Mutation_p.E66K|HYDIN_uc002ezw.3_Missense_Mutation_p.E56K	NM_032821	NP_116210	Q4G0P3	HYDIN_HUMAN	hydrocephalus inducing isoform a	39										ovary(1)|skin(1)	2		Ovarian(137;0.0654)				ACTTCTTCTTCTGTAACCACC	0.413000													33	40					0	0	1	0	0
ZFHX3	463	broad.mit.edu	37	16	72863752	72863752	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:72863752G>A	uc002fck.2	-	5	4128	c.3455C>T	c.(3454-3456)GCC>GTC	p.A1152V	ZFHX3_uc002fcl.2_Missense_Mutation_p.A238V	NM_006885	NP_008816	Q15911	ZFHX3_HUMAN	zinc finger homeobox 3 isoform A	1152				EEAIEDVEGPSETAADPEELAKDQEGGASSSQAEKELTDSP -> GEWSHRHGRPRLGLGVHLLETSRGLLFEGDVTDPAGPH VPY (in Ref. 5).	muscle organ development|negative regulation of myoblast differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transcription, DNA-dependent|positive regulation of myoblast differentiation	transcription factor complex	enzyme binding|sequence-specific DNA binding|sequence-specific enhancer binding RNA polymerase II transcription factor activity|transcription regulatory region DNA binding|zinc ion binding			ovary(2)|skin(2)	4		Ovarian(137;0.13)				ATCTTCAATGGCTTCTTCTGA	0.458000													15	60					0	0	1	0	0
WDR59	79726	broad.mit.edu	37	16	74943437	74943437	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:74943437G>A	uc002fdh.1	-	16	1706	c.1604C>T	c.(1603-1605)CCC>CTC	p.P535L	WDR59_uc002fdi.2_Missense_Mutation_p.P535L|WDR59_uc002fdg.1_Missense_Mutation_p.P127L	NM_030581	NP_085058	Q6PJI9	WDR59_HUMAN	WD repeat domain 59	535										ovary(1)|breast(1)	2						CCTAGGAAAGGGAATGTTGGC	0.552000													23	81					0	0	1	0	0
CHST5	23563	broad.mit.edu	37	16	75563660	75563660	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:75563660G>A	uc002fei.2	-	3	2018	c.623C>T	c.(622-624)CCG>CTG	p.P208L	CHST5_uc002fej.1_Missense_Mutation_p.P214L	NM_024533	NP_078809	Q9GZS9	CHST5_HUMAN	carbohydrate (N-acetylglucosamine 6-O)	208	Lumenal (Potential).				N-acetylglucosamine metabolic process|protein sulfation	integral to membrane|intrinsic to Golgi membrane	N-acetylglucosamine 6-O-sulfotransferase activity				0						GCTGAGCAGCGGGTAGAGCAC	0.711000													50	60					0	0	1	0	0
CNTNAP4	85445	broad.mit.edu	37	16	76528908	76528908	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:76528908G>A	uc002feu.1	+	16	2567	c.2182G>A	c.(2182-2184)GGA>AGA	p.G728R	CNTNAP4_uc002fev.1_Missense_Mutation_p.G592R|CNTNAP4_uc010chb.1_Missense_Mutation_p.G655R|CNTNAP4_uc002fex.1_Missense_Mutation_p.G731R|CNTNAP4_uc002few.2_Missense_Mutation_p.G703R	NM_033401	NP_207837	Q9C0A0	CNTP4_HUMAN	cell recognition protein CASPR4 isoform 1	728	Extracellular (Potential).|Fibrinogen C-terminal.				cell adhesion|signal transduction	integral to membrane	receptor binding			ovary(1)|pancreas(1)	2						TGGATTAGAGGGAAACTGCAT	0.403000													66	135					0	0	1	0	0
VAT1L	57687	broad.mit.edu	37	16	77918628	77918628	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:77918628G>A	uc002ffg.1	+	7	1103	c.1006G>A	c.(1006-1008)GAA>AAA	p.E336K		NM_020927	NP_065978	Q9HCJ6	VAT1L_HUMAN	vesicle amine transport protein 1 homolog (T.	336							oxidoreductase activity|zinc ion binding			central_nervous_system(1)	1						GGGAGTGGTGGAAAAACTCAT	0.502000													6	13					0	0	1	0	0
CDYL2	124359	broad.mit.edu	37	16	80646712	80646712	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:80646712G>A	uc002ffs.2	-	5	1134	c.1029C>T	c.(1027-1029)ATC>ATT	p.I343I		NM_152342	NP_689555	Q8N8U2	CDYL2_HUMAN	chromodomain protein, Y-like 2	343						nucleus	catalytic activity|protein binding			central_nervous_system(1)	1						TCTTAAACTGGATAAAGGCCT	0.562000													20	26					0	0	1	0	0
LRRC50	123872	broad.mit.edu	37	16	84203512	84203512	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:84203512G>A	uc002fhl.3	+	8	1259	c.1078G>A	c.(1078-1080)GAA>AAA	p.E360K	LRRC50_uc010vnw.1_Missense_Mutation_p.E124K	NM_178452	NP_848547	Q8NEP3	DAAF1_HUMAN	leucine rich repeat containing 50	360					axonemal dynein complex assembly|cilium morphogenesis	cilium axoneme|cytoplasm|spindle pole	dynein binding				0						CGCCAGTGCGGAAGGCAAGGA	0.532000									Kartagener_syndrome				12	74					0	0	1	0	0
KCNG4	93107	broad.mit.edu	37	16	84270359	84270359	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:84270359C>T	uc010voc.1	-	2	854	c.733G>A	c.(733-735)GAC>AAC	p.D245N	KCNG4_uc002fhu.1_Missense_Mutation_p.D245N	NM_172347	NP_758857	Q8TDN1	KCNG4_HUMAN	potassium voltage-gated channel, subfamily G,	245						voltage-gated potassium channel complex	voltage-gated potassium channel activity			breast(3)	3						GCCCTGAGGTCGGGCATGGTG	0.517000													15	59					0	0	1	0	0
ATP2C2	9914	broad.mit.edu	37	16	84494308	84494308	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:84494308G>A	uc002fhx.2	+	24	2471	c.2382G>A	c.(2380-2382)CGG>CGA	p.R794R	ATP2C2_uc010chj.2_Silent_p.R823R|ATP2C2_uc002fhy.2_Silent_p.R811R|ATP2C2_uc002fhz.2_Silent_p.R643R|ATP2C2_uc002fia.2_Silent_p.R105R	NM_014861	NP_055676	O75185	AT2C2_HUMAN	ATPase, Ca++ transporting, type 2C, member 2	794	Cytoplasmic (Potential).				ATP biosynthetic process	Golgi membrane|integral to membrane	ATP binding|calcium-transporting ATPase activity|metal ion binding|protein binding			breast(1)|central_nervous_system(1)	2						AGCCACCACGGAGTGTGCGGG	0.542000													92	93					0	0	1	0	0
FANCA	2175	broad.mit.edu	37	16	89831400	89831400	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:89831400G>A	uc002fou.1	-	28	2718	c.2676C>T	c.(2674-2676)TCC>TCT	p.S892S	FANCA_uc010vpn.1_Silent_p.S892S|FANCA_uc010vpo.1_Silent_p.S21S	NM_000135	NP_000126	O15360	FANCA_HUMAN	Fanconi anemia, complementation group A isoform	892					DNA repair|protein complex assembly	cytoplasm|nucleoplasm	protein binding			ovary(2)|breast(2)|central_nervous_system(1)|skin(1)	6		Lung NSC(15;8.48e-06)|all_lung(18;1.31e-05)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.028)		AGGGTCTCCAGGAAAGGCTGG	0.537000			D|Mis|N|F|S			AML|leukemia		Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				34	56					0	0	1	0	0
DEF8	54849	broad.mit.edu	37	16	90020691	90020691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:90020691C>T	uc002fpn.1	+	3	303	c.214C>T	c.(214-216)CGG>TGG	p.R72W	DEF8_uc002fpl.2_Missense_Mutation_p.R11W|DEF8_uc002fpm.2_Missense_Mutation_p.R11W|DEF8_uc002fpo.1_Missense_Mutation_p.R11W|DEF8_uc002fpp.1_Missense_Mutation_p.R11W|DEF8_uc010vpq.1_Intron|DEF8_uc010vpr.1_Missense_Mutation_p.R11W	NM_207514	NP_997397	Q6ZN54	DEFI8_HUMAN	differentially expressed in FDCP 8 isoform 1	72					intracellular signal transduction		zinc ion binding			central_nervous_system(1)	1		all_cancers(9;7.59e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.0019)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0274)		GGCCCGTTTCCGGCAGGCCCA	0.642000													44	72					0	0	1	0	0
PRDM7	11105	broad.mit.edu	37	16	90126823	90126823	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr16:90126823T>G	uc010cje.2	-	9	1179	c.1159A>C	c.(1159-1161)ATG>CTG	p.M387L	PRDM7_uc002fqo.2_Intron|PRDM7_uc010cjf.2_Intron|PRDM7_uc010cjg.1_Missense_Mutation_p.M181L	NM_001098173	NP_001091643	Q9NQW5	PRDM7_HUMAN	PR domain containing 7 isoform 1	387						chromosome|nucleus	nucleic acid binding			ovary(1)	1		all_cancers(9;4.44e-13)|Lung NSC(15;1.56e-06)|all_lung(18;2.18e-06)|all_neural(9;0.00118)|all_hematologic(23;0.0194)		BRCA - Breast invasive adenocarcinoma(80;0.0278)		CTCATCCCCATACCAGACCAG	0.522000													6	127					0	0	1	0	0
PELP1	27043	broad.mit.edu	37	17	4578571	4578571	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:4578571G>A	uc002fyi.3	-	10	1381	c.1155C>T	c.(1153-1155)CTC>CTT	p.L385L	PELP1_uc010vsf.1_Silent_p.L238L	NM_014389	NP_055204	Q8IZL8	PELP1_HUMAN	proline, glutamic acid and leucine rich protein	385					transcription, DNA-dependent	cytoplasm|MLL1 complex	protein binding			ovary(1)|central_nervous_system(1)	2						CCACTCACGCGAGGATGAGTG	0.602000													4	6					0	0	1	0	0
ENO3	2027	broad.mit.edu	37	17	4858534	4858534	+	Silent	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:4858534T>C	uc002gab.3	+	7	703	c.609T>C	c.(607-609)GAT>GAC	p.D203D	ENO3_uc010vsr.1_Silent_p.D110D|ENO3_uc002gac.3_Silent_p.D203D|ENO3_uc010vss.1_Silent_p.D160D|ENO3_uc010vst.1_Silent_p.D39D	NM_053013	NP_443739	P13929	ENOB_HUMAN	enolase 3	203					gluconeogenesis|glycolysis	phosphopyruvate hydratase complex	magnesium ion binding|phosphopyruvate hydratase activity			ovary(1)	1						ATGGGAAGGATGCCACCAATG	0.597000													41	51					0	0	1	0	0
PITPNM3	83394	broad.mit.edu	37	17	6371587	6371588	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:6371587_6371588GG>AA	uc002gdd.3	-	14	1998_1999	c.1847_1848CC>TT	c.(1846-1848)CCC>CTT	p.P616L	PITPNM3_uc010cln.2_Missense_Mutation_p.P580L|PITPNM3_uc010clm.2_Missense_Mutation_p.P99L|PITPNM3_uc002gdc.3_Missense_Mutation_p.P207L	NM_031220	NP_112497	Q9BZ71	PITM3_HUMAN	PITPNM family member 3 isoform 1	616					phosphatidylinositol metabolic process	endomembrane system|integral to membrane	calcium ion binding|lipid binding|phosphatidylinositol transporter activity|receptor tyrosine kinase binding			ovary(2)|central_nervous_system(2)	4				Colorectal(2;0.000372)|READ - Rectum adenocarcinoma(2;0.0276)|LUAD - Lung adenocarcinoma(2;0.0836)|COAD - Colon adenocarcinoma(228;0.185)		ACTTCTCCCGGGGGTTGGCAGG	0.634000													27	39					0	0	1	0	0
C17orf74	201243	broad.mit.edu	37	17	7330628	7330628	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:7330628C>T	uc002ggw.2	+	3	1391	c.1318C>T	c.(1318-1320)CCT>TCT	p.P440S	FGF11_uc010vtw.1_Intron	NM_175734	NP_783861	Q0P670	CQ074_HUMAN	hypothetical protein LOC201243	440						integral to membrane					0		Prostate(122;0.157)				GGACCCTGCCCCTCCCCCGAC	0.642000													15	55					0	0	1	0	0
MYH4	4622	broad.mit.edu	37	17	10351276	10351276	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:10351276C>T	uc002gmn.2	-	34	4935	c.4824G>A	c.(4822-4824)GAG>GAA	p.E1608E	uc002gml.1_Intron	NM_017533	NP_060003	Q9Y623	MYH4_HUMAN	myosin, heavy polypeptide 4, skeletal muscle	1608	Potential.				muscle filament sliding	muscle myosin complex|myosin filament|sarcomere	actin binding|ATP binding|calmodulin binding|microfilament motor activity|structural constituent of muscle			ovary(10)|skin(2)|central_nervous_system(1)	13						TGCTCCTGATCTCAGCATCCA	0.453000													83	75					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10398316	10398316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:10398316G>A	uc002gmo.2	-	37	5492	c.5398C>T	c.(5398-5400)CGT>TGT	p.R1800C	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1800	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						TCATCCAGACGATGCTGCAGG	0.552000													76	65					0	0	1	0	0
MYH1	4619	broad.mit.edu	37	17	10401153	10401153	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:10401153C>T	uc002gmo.2	-	31	4357	c.4263G>A	c.(4261-4263)ACG>ACA	p.T1421T	uc002gml.1_Intron	NM_005963	NP_005954	P12882	MYH1_HUMAN	myosin, heavy chain 1, skeletal muscle, adult	1421	Potential.					muscle myosin complex|myofibril|myosin filament	actin binding|ATP binding|calmodulin binding|motor activity			ovary(10)|skin(6)|breast(3)|upper_aerodigestive_tract(1)|kidney(1)	21						GCCTCTGCTTCGTCTTCTCAA	0.473000													21	57					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	15332941	15332941	+	RNA	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:15332941G>A	uc002goo.2	-	1		c.378C>T								Homo sapiens cDNA clone IMAGE:3626633, partial cds.																		tttggtggtggtggagatGCT	0.199000													2	3					0	0	1	0	0
MYO18A	399687	broad.mit.edu	37	17	27425431	27425431	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:27425431C>T	uc002hdt.1	-	24	3971	c.3813G>A	c.(3811-3813)GAG>GAA	p.E1271E	MYO18A_uc010wbc.1_Silent_p.E813E|MYO18A_uc002hds.2_Silent_p.E813E|MYO18A_uc010csa.1_Silent_p.E1271E|MYO18A_uc002hdu.1_Silent_p.E1271E|MYO18A_uc010wbd.1_Silent_p.E940E	NM_078471	NP_510880	Q92614	MY18A_HUMAN	myosin 18A isoform a	1271	Potential.				anti-apoptosis|DNA metabolic process	ER-Golgi intermediate compartment|myosin complex	ATP binding|DNA binding|DNA-dependent ATPase activity|identical protein binding|motor activity				0			Epithelial(11;4.97e-05)|BRCA - Breast invasive adenocarcinoma(11;0.000221)|all cancers(11;0.000234)|Colorectal(6;0.0102)|COAD - Colon adenocarcinoma(6;0.031)			TCTCCGCCTTCTCGAGCTTGC	0.637000													9	37					0	0	1	0	0
FNDC8	54752	broad.mit.edu	37	17	33456448	33456448	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:33456448G>A	uc002hix.2	+	3	675	c.593G>A	c.(592-594)TGG>TAG	p.W198*		NM_017559	NP_060029	Q8TC99	FNDC8_HUMAN	fibronectin type III domain containing 8	198	Fibronectin type-III.									ovary(2)	2		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.022)		TAGATTTCCTGGACCTACGCC	0.577000													26	82					0	0	1	0	0
SLFN13	146857	broad.mit.edu	37	17	33769194	33769194	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:33769194C>T	uc002hjk.1	-	3	1640	c.1310G>A	c.(1309-1311)GGA>GAA	p.G437E	SLFN13_uc010wch.1_Missense_Mutation_p.G437E|SLFN13_uc002hjl.2_Missense_Mutation_p.G437E|SLFN13_uc010ctt.2_Missense_Mutation_p.G119E|SLFN13_uc002hjm.2_Missense_Mutation_p.G106E	NM_144682	NP_653283	Q68D06	SLN13_HUMAN	schlafen family member 13	437						intracellular	ATP binding			ovary(1)|breast(1)	2				UCEC - Uterine corpus endometrioid carcinoma (308;0.0185)		GATCACAATTCCCTGGGAGAA	0.498000													16	43					0	0	1	0	0
CCL23	6368	broad.mit.edu	37	17	34344887	34344887	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:34344887G>A	uc002hkt.1	-	1	119	c.48C>T	c.(46-48)GCC>GCT	p.A16A	CCL23_uc002hks.1_Silent_p.A16A	NM_145898	NP_665905	P55773	CCL23_HUMAN	small inducible cytokine A23 isoform CKbeta8	16				MLVTALGSQARVTKDAETEFMMSKLPLENPVLL -> HAFL LPLVPGPGHKRCRDRVHECQSFHWKIQYFW (in Ref. 1).	cell-cell signaling|cellular calcium ion homeostasis|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|inflammatory response|negative regulation of cell proliferation	extracellular space	chemokine activity|heparin binding				0		Ovarian(249;0.17)		UCEC - Uterine corpus endometrioid carcinoma (308;0.0182)	Treprostinil(DB00374)	GGGATCCAAGGGCAGTAACAA	0.587000													19	46					0	0	1	0	0
MED1	5469	broad.mit.edu	37	17	37565202	37565202	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:37565202G>A	uc002hrv.3	-	17	3484	c.3272C>T	c.(3271-3273)TCC>TTC	p.S1091F	MED1_uc010wee.1_Missense_Mutation_p.S919F|MED1_uc002hru.2_Intron	NM_004774	NP_004765	Q15648	MED1_HUMAN	mediator complex subunit 1	1091	Ser-rich.				androgen biosynthetic process|androgen receptor signaling pathway|cellular lipid metabolic process|fat cell differentiation|positive regulation of transcription from RNA polymerase II promoter|regulation of transcription from RNA polymerase II promoter by nuclear hormone receptor|transcription initiation from RNA polymerase II promoter	mediator complex	DNA binding|estrogen receptor binding|ligand-dependent nuclear receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|peroxisome proliferator activated receptor binding|receptor activity|retinoic acid receptor binding|RNA polymerase II transcription cofactor activity|thyroid hormone receptor binding|vitamin D receptor binding			lung(2)|ovary(2)|breast(1)|skin(1)|kidney(1)|pancreas(1)	8		Ovarian(249;1.78e-06)|Lung SC(565;0.0262)	Lung(15;0.0178)|LUAD - Lung adenocarcinoma(14;0.146)	UCEC - Uterine corpus endometrioid carcinoma (308;6.64e-05)|BRCA - Breast invasive adenocarcinoma(366;0.00136)|READ - Rectum adenocarcinoma(1115;0.0649)		GCTGCCTGAGGAAGACACAGA	0.478000										HNSCC(31;0.082)			27	85					0	0	1	0	0
STAT3	6774	broad.mit.edu	37	17	40489793	40489793	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:40489793G>A	uc002hzl.1	-	7	873	c.633C>T	c.(631-633)GAC>GAT	p.D211D	STAT3_uc002hzk.1_Silent_p.D211D|STAT3_uc002hzm.1_Silent_p.D211D|STAT3_uc010wgh.1_Silent_p.D113D|STAT3_uc002hzn.1_Silent_p.D211D	NM_139276	NP_644805	P40763	STAT3_HUMAN	signal transducer and activator of transcription	211					cellular component movement|eating behavior|eye photoreceptor cell differentiation|glucose homeostasis|interleukin-6-mediated signaling pathway|interspecies interaction between organisms|JAK-STAT cascade involved in growth hormone signaling pathway|negative regulation of transcription from RNA polymerase II promoter|nerve growth factor receptor signaling pathway|positive regulation of transcription from RNA polymerase II promoter|protein import into nucleus|response to estradiol stimulus|sexual reproduction|temperature homeostasis	cytosol|nucleus|plasma membrane	calcium ion binding|ligand-regulated transcription factor activity|protein dimerization activity|protein kinase binding|sequence-specific DNA binding transcription factor activity|signal transducer activity|transcription factor binding|transcription regulatory region DNA binding			ovary(1)|lung(1)|breast(1)|central_nervous_system(1)	4		all_cancers(22;1.39e-06)|all_epithelial(22;2.95e-05)|Breast(137;0.000135)		BRCA - Breast invasive adenocarcinoma(366;0.139)		TCCGCATCTGGTCCAGCGCAG	0.517000									Hyperimmunoglobulin_E_Recurrent_Infection_Syndrome				25	71					0	0	1	0	0
ATP6V0A1	535	broad.mit.edu	37	17	40639346	40639346	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:40639346C>T	uc002hzr.2	+	10	1151	c.984C>T	c.(982-984)ACC>ACT	p.T328T	ATP6V0A1_uc002hzq.2_Silent_p.T328T|ATP6V0A1_uc002hzs.2_Silent_p.T335T|ATP6V0A1_uc010wgj.1_Silent_p.T285T|ATP6V0A1_uc010wgk.1_Silent_p.T285T|ATP6V0A1_uc010cyg.2_Intron|ATP6V0A1_uc010wgl.1_Silent_p.T187T	NM_001130021	NP_001123493	Q93050	VPP1_HUMAN	ATPase, H+ transporting, lysosomal V0 subunit a1	328	Cytoplasmic (Potential).				ATP hydrolysis coupled proton transport|cellular iron ion homeostasis|insulin receptor signaling pathway|transferrin transport	cytoplasmic vesicle membrane|endosome membrane|Golgi apparatus|integral to membrane|melanosome|nucleus|plasma membrane|proton-transporting two-sector ATPase complex, proton-transporting domain	ATPase binding|hydrogen ion transmembrane transporter activity			pancreas(1)	1		all_cancers(22;1.18e-05)|Breast(137;0.000105)|all_epithelial(22;0.000254)		BRCA - Breast invasive adenocarcinoma(366;0.137)		GCCCTGTCACCGACCTTGACT	0.517000													29	111					0	0	1	0	0
RAMP2	10266	broad.mit.edu	37	17	40914382	40914382	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:40914382T>A	uc002ibg.2	+	3	241	c.173T>A	c.(172-174)GTG>GAG	p.V58E	LOC100190938_uc002ibd.1_5'Flank|LOC100190938_uc002ibe.3_5'Flank|LOC100190938_uc002ibf.3_5'Flank|RAMP2_uc010cyt.2_Missense_Mutation_p.V63E|RAMP2_uc002ibh.2_Intron	NM_005854	NP_005845	O60895	RAMP2_HUMAN	receptor activity modifying protein 2 precursor	58	Extracellular (Potential).				intracellular protein transport|receptor-mediated endocytosis|regulation of G-protein coupled receptor protein signaling pathway	coated pit|integral to plasma membrane|lysosome	protein transporter activity				0		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.0741)	Pramlintide(DB01278)	GGGGGGACGGTGAAGAACTAT	0.502000													62	167					0	0	1	0	0
AOC3	8639	broad.mit.edu	37	17	41004728	41004728	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:41004728G>A	uc002ibv.2	+	1	1528	c.1368G>A	c.(1366-1368)GCG>GCA	p.A456A		NM_003734	NP_003725	Q16853	AOC3_HUMAN	amine oxidase, copper containing 3 precursor	456	Extracellular (Potential).				amine metabolic process|cell adhesion|inflammatory response	cell surface|integral to membrane|plasma membrane	aliphatic-amine oxidase activity|aminoacetone:oxygen oxidoreductase(deaminating) activity|copper ion binding|phenethylamine:oxygen oxidoreductase (deaminating) activity|primary amine oxidase activity|protein homodimerization activity|quinone binding|tryptamine:oxygen oxidoreductase (deaminating) activity			central_nervous_system(2)|ovary(1)|skin(1)	4		Breast(137;0.000143)		BRCA - Breast invasive adenocarcinoma(366;0.156)	Hydralazine(DB01275)|Phenelzine(DB00780)	GGGGTCTTGCGGAAACGGTGC	0.522000													27	70					0	0	1	0	0
ITGA3	3675	broad.mit.edu	37	17	48156823	48156823	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:48156823C>T	uc010dbl.2	+	21	3072	c.2608C>T	c.(2608-2610)CCA>TCA	p.P870S	ITGA3_uc010dbm.2_Missense_Mutation_p.P870S	NM_002204	NP_002195	P26006	ITA3_HUMAN	integrin alpha 3 isoform a precursor	870	Extracellular (Potential).				blood coagulation|cell-matrix adhesion|integrin-mediated signaling pathway|leukocyte migration	cell surface|integrin complex	protein binding|receptor activity			ovary(2)|pancreas(1)	3						GCCATCATCCCCACAGCGCAG	0.607000													10	62					0	0	1	0	0
TMEM92	162461	broad.mit.edu	37	17	48356278	48356278	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:48356278G>A	uc002iqn.1	+	4	317	c.287G>A	c.(286-288)GGG>GAG	p.G96E		NM_153229	NP_694961	Q6UXU6	TMM92_HUMAN	transmembrane protein 92 precursor	96	Pro-rich.|Cytoplasmic (Potential).					integral to membrane					0						GATTGCCGGGGGCCCCTGGAA	0.617000													19	47					0	0	1	0	0
LRRC59	55379	broad.mit.edu	37	17	48460400	48460400	+	Silent	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:48460400T>A	uc002iqt.2	-	7	1027	c.873A>T	c.(871-873)CTA>CTT	p.L291L		NM_018509	NP_060979	Q96AG4	LRC59_HUMAN	leucine rich repeat containing 59	291	Lumenal (Potential).					endoplasmic reticulum membrane|integral to membrane|microsome|mitochondrial nucleoid	protein binding			central_nervous_system(1)	1	Breast(11;5.62e-19)		BRCA - Breast invasive adenocarcinoma(22;2.43e-08)			CATGGCGGCGTAGACCCTGGA	0.612000													13	50					0	0	1	0	0
C17orf67	339210	broad.mit.edu	37	17	54893238	54893238	+	Silent	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:54893238A>C	uc010dci.2	-	1	13	c.6T>G	c.(4-6)GCT>GCG	p.A2A	C17orf67_uc002iuq.2_RNA	NM_001085430	NP_001078899	Q0P5P2	CQ067_HUMAN	hypothetical protein LOC339210 precursor	2						extracellular region					0	Breast(9;2.49e-06)					ACTTGAAGGAAGCCATGCCAG	0.493000													16	64					0	0	1	0	0
Unknown	0	broad.mit.edu	37	17	58511257	58511257	+	RNA	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:58511257G>A	uc002iyr.1	-	1		c.2101C>T								Homo sapiens cDNA FLJ33664 fis, clone BRAMY2027451, moderately similar to 60S RIBOSOMAL PROTEIN L12.																		CAAGGTTGACGATCTCATCAA	0.473000													11	28					0	0	1	0	0
EFCAB3	146779	broad.mit.edu	37	17	60483847	60483847	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:60483847C>T	uc002izu.1	+	7	573	c.495C>T	c.(493-495)TTC>TTT	p.F165F	EFCAB3_uc010wpc.1_Silent_p.F217F	NM_173503	NP_775774	Q8N7B9	EFCB3_HUMAN	EF-hand calcium binding domain 3 isoform b	165							calcium ion binding			skin(1)	1			BRCA - Breast invasive adenocarcinoma(2;2.27e-11)			AAAGCTATTTCCAAAGAAAAT	0.363000													3	14					0	0	1	0	0
MRC2	9902	broad.mit.edu	37	17	60757799	60757799	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:60757799G>A	uc002jad.2	+	16	2860	c.2458G>A	c.(2458-2460)GAC>AAC	p.D820N	MRC2_uc002jae.2_5'Flank|MRC2_uc002jaf.2_5'Flank	NM_006039	NP_006030	Q9UBG0	MRC2_HUMAN	mannose receptor, C type 2	820	Extracellular (Potential).				endocytosis	integral to membrane	receptor activity|sugar binding			ovary(1)|central_nervous_system(1)|skin(1)	3						GCGGGAGCCCGACGACAGCCC	0.627000													31	119					0	0	1	0	0
ABCA8	10351	broad.mit.edu	37	17	66871523	66871523	+	Silent	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:66871523T>C	uc002jhp.2	-	35	4568	c.4389A>G	c.(4387-4389)CAA>CAG	p.Q1463Q	ABCA8_uc002jhq.2_Silent_p.Q1503Q|ABCA8_uc010wqq.1_Silent_p.Q1498Q	NM_007168	NP_009099	O94911	ABCA8_HUMAN	ATP-binding cassette, sub-family A member 8	1463	ABC transporter 2.					integral to membrane|plasma membrane	ATP binding|ATPase activity, coupled to transmembrane movement of substances			ovary(2)|skin(1)	3	Breast(10;4.56e-13)					TTTTCAGGTGTTGGATGGAAC	0.438000													17	50					0	0	1	0	0
C17orf77	146723	broad.mit.edu	37	17	72588678	72588678	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:72588678A>T	uc002jla.1	+	3	855	c.493A>T	c.(493-495)AGC>TGC	p.S165C	CD300LD_uc002jkz.2_5'Flank	NM_152460	NP_689673	Q96MU5	CQ077_HUMAN	hypothetical protein LOC146723	165						extracellular region					0						AGCATTGAGGAGCTGCGGGAT	0.582000													8	16					0	0	1	0	0
CD300E	342510	broad.mit.edu	37	17	72613536	72613536	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:72613536G>A	uc002jlb.1	-	2	150	c.109C>T	c.(109-111)CAG>TAG	p.Q37*		NM_181449	NP_852114	Q496F6	CLM2_HUMAN	CD300e molecule precursor	37	Ig-like V-type.|Extracellular (Potential).					integral to membrane|plasma membrane	receptor activity			skin(2)|large_intestine(1)|ovary(1)	4						CTCTCATACTGACACCACACT	0.542000													11	38					0	0	1	0	0
RAB37	326624	broad.mit.edu	37	17	72739288	72739288	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:72739288G>A	uc002jlk.2	+	4	323	c.267G>A	c.(265-267)CAG>CAA	p.Q89Q	RAB37_uc002jlc.2_Silent_p.Q82Q|RAB37_uc010dfu.2_Silent_p.Q82Q|RAB37_uc002jld.2_Silent_p.Q82Q|RAB37_uc010wrb.1_Silent_p.Q57Q|RAB37_uc010wrc.1_Silent_p.Q94Q|RAB37_uc010wrd.1_Silent_p.Q57Q|RAB37_uc010wre.1_Silent_p.Q52Q|RAB37_uc002jll.3_RNA	NM_001006638	NP_001006639	Q96AX2	RAB37_HUMAN	RAB37, member RAS oncogene family isoform 2	89	GTP (By similarity).				protein transport|small GTPase mediated signal transduction	ER-Golgi intermediate compartment	GTP binding			ovary(1)	1						CCGCTGGGCAGGAACGGTTCC	0.592000													29	119					0	0	1	0	0
TMEM104	54868	broad.mit.edu	37	17	72832611	72832611	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:72832611G>A	uc002jls.3	+	10	1438	c.1276G>A	c.(1276-1278)GGG>AGG	p.G426R	TMEM104_uc010wrf.1_Intron|TMEM104_uc010wrg.1_Intron|TMEM104_uc010dfx.2_Missense_Mutation_p.G426R	NM_017728	NP_060198	Q8NE00	TM104_HUMAN	transmembrane protein 104	426	Helical; (Potential).					integral to membrane					0	all_lung(278;0.23)					GGGCATCACAGGGGCCTACGC	0.667000													14	33					0	0	1	0	0
ITGB4	3691	broad.mit.edu	37	17	73724492	73724492	+	Silent	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:73724492T>C	uc002jpg.2	+	6	691	c.504T>C	c.(502-504)ACT>ACC	p.T168T	ITGB4_uc002jph.2_Silent_p.T168T|ITGB4_uc010dgo.2_Silent_p.T168T|ITGB4_uc002jpi.3_Silent_p.T168T|ITGB4_uc010dgp.1_Silent_p.T168T|ITGB4_uc002jpj.2_Silent_p.T168T	NM_000213	NP_000204	P16144	ITB4_HUMAN	integrin beta 4 isoform 1 precursor	168	VWFA.|Extracellular (Potential).				cell communication|cell motility|cell-matrix adhesion|hemidesmosome assembly|integrin-mediated signaling pathway|multicellular organismal development|response to wounding	cell leading edge|cell surface|hemidesmosome|integrin complex	protein binding|receptor activity			lung(4)	4	all_cancers(13;1.5e-07)		all cancers(21;8.32e-07)|Epithelial(20;1.92e-06)|BRCA - Breast invasive adenocarcinoma(9;0.00194)|Lung(188;0.132)|LUSC - Lung squamous cell carcinoma(166;0.154)			GCGACTACACTATTGGATTTG	0.582000													15	74					0	0	1	0	0
CYTH1	9267	broad.mit.edu	37	17	76672231	76672231	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:76672231G>A	uc002jvw.2	-	13	1207	c.1136C>T	c.(1135-1137)CCT>CTT	p.P379L	CYTH1_uc010wtv.1_RNA	NM_017456	NP_059430	Q15438	CYH1_HUMAN	cytohesin 1 isoform 2	380					regulation of ARF protein signal transduction|regulation of cell adhesion|vesicle-mediated transport	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity|protein binding			ovary(1)	1						TTCGTAGAAAGGGTCCCTGCT	0.572000													5	16					0	0	1	0	0
TBC1D16	125058	broad.mit.edu	37	17	77924270	77924270	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:77924270G>A	uc002jxj.2	-	6	1313	c.1197C>T	c.(1195-1197)TCC>TCT	p.S399S	TBC1D16_uc002jxh.2_Silent_p.S37S|TBC1D16_uc002jxi.2_Silent_p.S38S|TBC1D16_uc002jxk.1_Silent_p.S37S	NM_019020	NP_061893	Q8TBP0	TBC16_HUMAN	TBC1 domain family, member 16	399						intracellular	Rab GTPase activator activity				0	all_neural(118;0.167)		OV - Ovarian serous cystadenocarcinoma(97;0.00739)|BRCA - Breast invasive adenocarcinoma(99;0.0819)			TGAGCCAGGCGGAGACGCCGA	0.667000													9	18					0	0	1	0	0
C17orf56	146705	broad.mit.edu	37	17	79202912	79202912	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:79202912C>T	uc002jzu.1	-	12	1416	c.1394G>A	c.(1393-1395)TGG>TAG	p.W465*	C17orf56_uc002jzr.1_Nonsense_Mutation_p.W135*|C17orf56_uc002jzs.1_Nonsense_Mutation_p.W381*|C17orf56_uc002jzt.1_Nonsense_Mutation_p.W381*|C17orf56_uc002jzv.1_Nonsense_Mutation_p.W313*|uc002jzw.1_RNA	NM_144679	NP_653280	Q96N21	CQ056_HUMAN	hypothetical protein LOC146705	465						integral to membrane					0	all_neural(118;0.0804)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0272)|OV - Ovarian serous cystadenocarcinoma(97;0.117)			GTCGCGGCTCCACGCACAGCT	0.687000													5	33					0	0	1	0	0
ACTG1	71	broad.mit.edu	37	17	79478971	79478971	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:79478971C>T	uc002kaj.1	-	2	346	c.321G>A	c.(319-321)GAG>GAA	p.E107E	ACTG1_uc002kah.1_5'Flank|ACTG1_uc002kai.1_Silent_p.E64E|ACTG1_uc002kak.1_Silent_p.E107E|ACTG1_uc010wun.1_Silent_p.E107E|ACTG1_uc002kal.1_Silent_p.E107E|ACTG1_uc002kag.2_RNA	NM_001614	NP_001605	P63261	ACTG_HUMAN	actin, gamma 1 propeptide	107					adherens junction organization|axon guidance|blood coagulation|cell junction assembly|cellular component movement	cytoskeleton|cytosol	ATP binding|identical protein binding			ovary(1)|central_nervous_system(1)	2	all_neural(118;0.0878)|Melanoma(429;0.242)		BRCA - Breast invasive adenocarcinoma(99;0.0282)|OV - Ovarian serous cystadenocarcinoma(97;0.0547)			TCAGGGGGGCCTCGGTCAGCA	0.632000													25	49					0	0	1	0	0
METRNL	284207	broad.mit.edu	37	17	81050936	81050936	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr17:81050936C>T	uc002kgh.2	+	3	706	c.581C>T	c.(580-582)ACC>ATC	p.T194I	METRNL_uc002kgi.2_Missense_Mutation_p.T112I	NM_001004431	NP_001004431	Q641Q3	METRL_HUMAN	meteorin, glial cell differentiation	194						extracellular region					0	Breast(20;0.000443)|all_neural(118;0.0779)		BRCA - Breast invasive adenocarcinoma(99;0.0517)|OV - Ovarian serous cystadenocarcinoma(97;0.0868)			TGCAGTGACACCGAGGTGCTC	0.627000													6	34					0	0	1	0	0
FAM38B	63895	broad.mit.edu	37	18	10675265	10675265	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr18:10675265G>A	uc002kor.3	-	12	1774	c.1634C>T	c.(1633-1635)CCA>CTA	p.P545L	FAM38B_uc002koq.2_Missense_Mutation_p.P380L	NM_022068	NP_071351	Q9H5I5	PIEZ2_HUMAN	family with sequence similarity 38, member B	2588						integral to membrane	ion channel activity			ovary(1)	1						CACATAATATGGATAAATCTT	0.279000													17	22					0	0	1	0	0
SERPINB4	6318	broad.mit.edu	37	18	61308225	61308225	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr18:61308225C>T	uc002ljf.2	-	5	438	c.352G>A	c.(352-354)GAA>AAA	p.E118K	SERPINB4_uc002lje.2_Missense_Mutation_p.E118K|SERPINB4_uc002ljg.2_Intron	NM_002974	NP_002965	P48594	SPB4_HUMAN	serine (or cysteine) proteinase inhibitor, clade	118					immune response|regulation of proteolysis	cytoplasm|extracellular region	protein binding|serine-type endopeptidase inhibitor activity			ovary(2)|lung(1)	3						TCTAAATATTCCTTTGAGATA	0.343000													27	11					0	0	1	0	0
DSEL	92126	broad.mit.edu	37	18	65180609	65180609	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr18:65180609G>A	uc002lke.1	-	2	2491	c.1267C>T	c.(1267-1269)CCT>TCT	p.P423S		NM_032160	NP_115536	Q8IZU8	DSEL_HUMAN	dermatan sulfate epimerase-like	413						integral to membrane	isomerase activity|sulfotransferase activity			ovary(3)|upper_aerodigestive_tract(1)|large_intestine(1)|central_nervous_system(1)	6		Esophageal squamous(42;0.129)				CCCCAGTTAGGGAATGTGTGT	0.488000													21	60					0	0	1	0	0
ZNF555	148254	broad.mit.edu	37	19	2853201	2853201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:2853201C>T	uc002lwo.2	+	4	1227	c.1138C>T	c.(1138-1140)CCC>TCC	p.P380S	ZNF555_uc002lwn.3_Missense_Mutation_p.P379S	NM_152791	NP_690004	Q8NEP9	ZN555_HUMAN	zinc finger protein 555	380	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1				UCEC - Uterine corpus endometrioid carcinoma (162;6.64e-05)|OV - Ovarian serous cystadenocarcinoma(105;1.09e-113)|Epithelial(107;3.79e-112)|all cancers(105;1.67e-104)|BRCA - Breast invasive adenocarcinoma(158;0.00136)|STAD - Stomach adenocarcinoma(1328;0.18)		CTTCATTTATCCCCAGTCCTT	0.468000													5	43					0	0	1	0	0
PLIN4	729359	broad.mit.edu	37	19	4512034	4512034	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:4512034C>T	uc002mar.1	-	3	1896	c.1896G>A	c.(1894-1896)AAG>AAA	p.K632K	PLIN4_uc010dub.1_5'Flank	NM_001080400	NP_001073869	Q96Q06	PLIN4_HUMAN	plasma membrane associated protein, S3-12	632	27 X 33 AA approximate tandem repeat.|17.					lipid particle|plasma membrane					0						GCACAGCCCCCTTGGCCACGT	0.552000													53	115					0	0	1	0	0
TMEM146	257062	broad.mit.edu	37	19	5772951	5772951	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:5772951G>C	uc002mda.2	+	20	1977	c.1916G>C	c.(1915-1917)GGG>GCG	p.G639A		NM_152784	NP_689997	Q86XM0	TM146_HUMAN	transmembrane protein 146 precursor	639	Extracellular (Potential).					integral to membrane				ovary(1)|central_nervous_system(1)|pancreas(1)	3						AAGGAATTCGGGGGGCCCTTC	0.577000													11	34					0	0	1	0	0
SH2D3A	10045	broad.mit.edu	37	19	6760957	6760957	+	Silent	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:6760957A>C	uc002mft.2	-	3	305	c.111T>G	c.(109-111)GTT>GTG	p.V37V	SH2D3A_uc010xjg.1_Intron	NM_005490	NP_005481	Q9BRG2	SH23A_HUMAN	SH2 domain containing 3A	37	SH2.				JNK cascade|small GTPase mediated signal transduction	intracellular	guanyl-nucleotide exchange factor activity|SH3/SH2 adaptor activity			breast(2)	2						CAGAGGCGCGAACCAGGAAGT	0.612000													9	29					0	0	1	0	0
CLEC4G	339390	broad.mit.edu	37	19	7796197	7796197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:7796197C>T	uc002mhp.3	-	3	244	c.175G>A	c.(175-177)GAG>AAG	p.E59K		NM_198492	NP_940894	Q6UXB4	CLC4G_HUMAN	C-type lectin domain family 4, member G	59	Extracellular (Potential).					integral to membrane	protein binding|sugar binding				0						GCCGCGCGCTCCGTGGAGGCT	0.726000													4	5					0	0	1	0	0
ELAVL1	1994	broad.mit.edu	37	19	8056644	8056644	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:8056644C>T	uc002mjb.2	-	2	223	c.56G>A	c.(55-57)AGA>AAA	p.R19K		NM_001419	NP_001410	Q15717	ELAV1_HUMAN	ELAV-like 1	19					3'-UTR-mediated mRNA stabilization|multicellular organismal development	cytoplasm|nucleoplasm	identical protein binding|mRNA binding|nucleotide binding				0						CAAATTCGTTCTCCCGATGTC	0.423000													23	93					0	0	1	0	0
ACTL9	284382	broad.mit.edu	37	19	8807893	8807893	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:8807893G>A	uc002mkl.2	-	1	1280	c.1159C>T	c.(1159-1161)CTG>TTG	p.L387L		NM_178525	NP_848620	Q8TC94	ACTL9_HUMAN	actin-like 9	387						cytoplasm|cytoskeleton				large_intestine(2)|pancreas(1)	3						AGGGAGGCCAGGATGGAGCCC	0.647000													26	28					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9045834	9045834	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:9045834C>T	uc002mkp.2	-	5	36001	c.35797G>A	c.(35797-35799)GAA>AAA	p.E11933K		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	11935	Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						CTGGAAAATTCTGGGGGTCCA	0.493000													45	77					0	0	1	0	0
MUC16	94025	broad.mit.edu	37	19	9061310	9061310	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:9061310C>T	uc002mkp.2	-	3	26340	c.26136G>A	c.(26134-26136)GAG>GAA	p.E8712E		NM_024690	NP_078966	Q8WXI7	MUC16_HUMAN	mucin 16	8714	Ser-rich.|Thr-rich.|Extracellular (Potential).				cell adhesion	extracellular space|extrinsic to membrane|integral to membrane|plasma membrane	protein binding			lung(30)|ovary(15)|breast(8)|large_intestine(1)|skin(1)|prostate(1)|pancreas(1)	57						AGGTACTGATCTCCCTTAATC	0.498000													9	47					0	0	1	0	0
ZNF560	147741	broad.mit.edu	37	19	9579841	9579841	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:9579841G>A	uc002mlp.1	-	9	762	c.552C>T	c.(550-552)ACC>ACT	p.T184T	ZNF560_uc010dwr.1_Silent_p.T78T	NM_152476	NP_689689	Q96MR9	ZN560_HUMAN	zinc finger protein 560	184					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			skin(2)|ovary(1)|large_intestine(1)|pancreas(1)|liver(1)	6						CTGGCCCTTTGGTTTTCAGGC	0.303000													7	5					0	0	1	0	0
ICAM5	7087	broad.mit.edu	37	19	10404880	10404880	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:10404880G>A	uc002mnu.3	+	8	1941	c.1876G>A	c.(1876-1878)GAC>AAC	p.D626N	ICAM5_uc002mnv.3_Missense_Mutation_p.D501N	NM_003259	NP_003250	Q9UMF0	ICAM5_HUMAN	intercellular adhesion molecule 5 precursor	626	Extracellular (Potential).|Ig-like C2-type 7.				cell-cell adhesion	integral to plasma membrane				breast(3)	3			OV - Ovarian serous cystadenocarcinoma(20;2.64e-09)|Epithelial(33;4.31e-06)|all cancers(31;9.75e-06)			GGCACCCCCAGACCCTAGTCC	0.647000													58	101					0	0	1	0	0
KRI1	65095	broad.mit.edu	37	19	10671070	10671070	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:10671070G>A	uc002moy.1	-	9	745	c.736C>T	c.(736-738)CTG>TTG	p.L246L	KRI1_uc002mow.1_5'UTR|KRI1_uc002mox.1_Silent_p.L242L	NM_023008	NP_075384	Q8N9T8	KRI1_HUMAN	KRI1 homolog	246	Glu-rich.									ovary(1)	1			Epithelial(33;9.2e-06)|all cancers(31;3.9e-05)			TAATCCCGCAGGAACCGCTCC	0.408000													17	90					0	0	1	0	0
DNM2	1785	broad.mit.edu	37	19	10941027	10941027	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:10941027C>T	uc002mps.1	+	20	2680	c.2516C>T	c.(2515-2517)CCC>CTC	p.P839L	DNM2_uc010dxk.2_Intron|DNM2_uc002mpt.1_Missense_Mutation_p.P839L|DNM2_uc002mpv.1_Missense_Mutation_p.P835L|DNM2_uc002mpu.1_Missense_Mutation_p.P835L|DNM2_uc010dxl.1_Missense_Mutation_p.P839L|DNM2_uc002mpw.2_Missense_Mutation_p.P568L|DNM2_uc002mpx.1_Missense_Mutation_p.P195L	NM_001005361	NP_001005361	P50570	DYN2_HUMAN	dynamin 2 isoform 2	839	Pro-rich.				G2/M transition of mitotic cell cycle|positive regulation of apoptosis|positive regulation of transcription, DNA-dependent|post-Golgi vesicle-mediated transport|receptor internalization|signal transduction|synaptic vesicle transport|transferrin transport	cell junction|cytosol|Golgi membrane|microtubule|postsynaptic density|postsynaptic membrane	GTP binding|GTPase activity|microtubule binding			central_nervous_system(2)|skin(2)|ovary(1)|breast(1)	6			Epithelial(33;4.17e-05)|all cancers(31;8.48e-05)			GTTCGGATCCCCCCAGGGATT	0.667000													35	111					0	0	1	0	0
PRKCSH	5589	broad.mit.edu	37	19	11558519	11558519	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:11558519G>A	uc002mrt.2	+	12	1356	c.1020G>A	c.(1018-1020)CCG>CCA	p.P340P	PRKCSH_uc002mru.2_Intron|PRKCSH_uc010xlz.1_Silent_p.P347P|PRKCSH_uc010dya.2_Silent_p.P122P|PRKCSH_uc010dyb.2_Intron	NM_002743	NP_002734	P14314	GLU2B_HUMAN	protein kinase C substrate 80K-H isoform 1	340				EAPPPLSPPQ -> VQGEQPK (in Ref. 5; AAH15154).	innate immune response|intracellular protein kinase cascade|post-translational protein modification|protein folding|protein N-linked glycosylation via asparagine	endoplasmic reticulum lumen	calcium ion binding|protein kinase C binding				0						AGGCCCCACCGCCACTGTCAC	0.677000													6	14					0	0	1	0	0
ZNF443	10224	broad.mit.edu	37	19	12541141	12541141	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:12541141C>T	uc002mtu.2	-	4	2043	c.1845G>A	c.(1843-1845)CCG>CCA	p.P615P		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	615					induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TACATTCATACGGGTTCTCTC	0.403000													6	65					0	0	1	0	0
ZNF443	10224	broad.mit.edu	37	19	12543219	12543219	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:12543219G>A	uc002mtu.2	-	3	361	c.163C>T	c.(163-165)CAA>TAA	p.Q55*		NM_005815	NP_005806	Q9Y2A4	ZN443_HUMAN	zinc finger protein 443	55	KRAB.				induction of apoptosis|regulation of transcription, DNA-dependent|response to stress|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			pancreas(1)	1						TATCTATATTGATCTTCAATG	0.294000													27	52					0	0	1	0	0
IL27RA	9466	broad.mit.edu	37	19	14159826	14159826	+	Missense_Mutation	SNP	C	A	A	rs143335480		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:14159826C>A	uc002mxx.2	+	9	1598	c.1175C>A	c.(1174-1176)ACT>AAT	p.T392N		NM_004843	NP_004834	Q6UWB1	I27RA_HUMAN	class I cytokine receptor precursor	392	Extracellular (Potential).|Fibronectin type-III 2.				cell surface receptor linked signaling pathway|immune response	integral to plasma membrane	transmembrane receptor activity				0						TATCGAATCACTGTGACCGCA	0.532000											OREG0025303	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	4	123					5.9392e-07	6.0434e-07	1	1	0
TECR	9524	broad.mit.edu	37	19	14675058	14675058	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:14675058C>T	uc002mza.2	+	7	575	c.448C>T	c.(448-450)CGC>TGC	p.R150C	TECR_uc002mzb.2_Missense_Mutation_p.R165C|TECR_uc010xns.1_5'UTR|TECR_uc002mzc.2_5'UTR|TECR_uc002mzd.2_Missense_Mutation_p.R150C|TECR_uc002mze.2_5'Flank|TECR_uc002mzf.1_5'Flank	NM_138501	NP_612510	Q9NZ01	TECR_HUMAN	glycoprotein, synaptic 2	150					fatty acid elongation|long-chain fatty-acyl-CoA biosynthetic process|triglyceride biosynthetic process|very long-chain fatty acid biosynthetic process	integral to endoplasmic reticulum membrane	trans-2-enoyl-CoA reductase (NADPH) activity|very long-chain-acyl-CoA dehydrogenase activity				0						CTTCGTGCACCGCTTCTCCCA	0.443000													18	85					0	0	1	0	0
NOTCH3	4854	broad.mit.edu	37	19	15302466	15302466	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:15302466G>T	uc002nan.2	-	6	881	c.805C>A	c.(805-807)CAG>AAG	p.Q269K	NOTCH3_uc002nao.1_Missense_Mutation_p.Q269K	NM_000435	NP_000426	Q9UM47	NOTC3_HUMAN	Notch homolog 3 precursor	269	Extracellular (Potential).|EGF-like 6; calcium-binding (Potential).				Notch receptor processing|Notch signaling pathway|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to membrane|nucleoplasm|plasma membrane	calcium ion binding|protein binding|receptor activity			lung(8)|ovary(5)|skin(4)|prostate(2)|central_nervous_system(1)|breast(1)	21			OV - Ovarian serous cystadenocarcinoma(3;2.6e-20)|Epithelial(3;1.34e-16)|all cancers(3;5.13e-15)			GTGCAGAACTGGCCTGTGGCA	0.657000													5	34					3.59834e-05	3.64018e-05	1	1	0
EPHX3	79852	broad.mit.edu	37	19	15338473	15338473	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:15338473C>T	uc002nap.2	-	7	1067	c.858G>A	c.(856-858)AGG>AGA	p.R286R	EPHX3_uc002naq.2_Silent_p.R286R	NM_024794	NP_079070	Q9H6B9	EPHX3_HUMAN	abhydrolase domain containing 9 precursor	286						extracellular region	hydrolase activity				0						GGGGGAAGTTCCTGTGGCcag	0.507000													17	36					0	0	1	0	0
WIZ	58525	broad.mit.edu	37	19	15535023	15535023	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:15535023G>A	uc002nbc.2	-	7	2741	c.2718C>T	c.(2716-2718)TTC>TTT	p.F906F	WIZ_uc002nba.3_Silent_p.F773F|WIZ_uc002nbb.3_Silent_p.F732F	NM_021241	NP_067064	O95785	WIZ_HUMAN	widely-interspaced zinc finger motifs	1589						nucleus	zinc ion binding				0						TGTTGCCCACGAACTTGACAA	0.647000													9	27					0	0	1	0	0
GMIP	51291	broad.mit.edu	37	19	19746293	19746293	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:19746293C>T	uc002nnd.2	-	15	1608	c.1491G>A	c.(1489-1491)CGG>CGA	p.R497R	GMIP_uc010xrb.1_Silent_p.R471R|GMIP_uc010xrc.1_Silent_p.R468R	NM_016573	NP_057657	Q9P107	GMIP_HUMAN	GEM interacting protein	497	Phorbol-ester/DAG-type.				negative regulation of Rho GTPase activity|small GTPase mediated signal transduction	cytosol	metal ion binding|protein binding|Rho GTPase activator activity			ovary(1)	1						CCCGCAGTCGCCGCAGCTGGT	0.652000													18	80					0	0	1	0	0
ZNF737	100129842	broad.mit.edu	37	19	20728763	20728763	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:20728763G>A	uc002npa.2	-	4	426	c.246C>T	c.(244-246)GCC>GCT	p.A82A		NM_001159293	NP_001152765	C9JHM3	C9JHM3_HUMAN	zinc finger protein 737	82					regulation of transcription, DNA-dependent	intracellular	nucleic acid binding|zinc ion binding			ovary(1)	1						AAAGATCTCGGGCAAAATGAG	0.323000													6	29					0	0	1	0	0
ZNF43	7594	broad.mit.edu	37	19	21990978	21990978	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:21990978G>A	uc002nqj.2	-	4	1991	c.1861C>T	c.(1861-1863)CCC>TCC	p.P621S	ZNF43_uc010ecv.2_Missense_Mutation_p.P615S|ZNF43_uc002nql.2_Missense_Mutation_p.P615S|ZNF43_uc002nqm.2_Missense_Mutation_p.P615S|ZNF43_uc002nqk.2_Missense_Mutation_p.P551S	NM_003423	NP_003414	P17038	ZNF43_HUMAN	zinc finger protein 43	621					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			large_intestine(1)|ovary(1)	2		Renal(1328;0.000219)|Hepatocellular(1079;0.121)		GBM - Glioblastoma multiforme(1328;5.97e-05)|STAD - Stomach adenocarcinoma(1328;0.0127)		CATTTGTAGGGTTTTCCTCCA	0.348000													8	46					0	0	1	0	0
ZNF98	148198	broad.mit.edu	37	19	22575649	22575649	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:22575649C>T	uc002nqt.2	-	4	510	c.388G>A	c.(388-390)GAT>AAT	p.D130N		NM_001098626	NP_001092096	A6NK75	ZNF98_HUMAN	zinc finger protein 98	130					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|skin(1)	2		all_cancers(12;0.0536)|all_lung(12;0.00187)|Lung NSC(12;0.0019)|all_epithelial(12;0.00542)|Hepatocellular(1079;0.244)				TTACACTCATCCATGCTTTTA	0.308000													6	28					0	0	1	0	0
ZNF536	9745	broad.mit.edu	37	19	30935544	30935544	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:30935544T>C	uc002nsu.1	+	2	1213	c.1075T>C	c.(1075-1077)TTC>CTC	p.F359L	ZNF536_uc010edd.1_Missense_Mutation_p.F359L	NM_014717	NP_055532	O15090	ZN536_HUMAN	zinc finger protein 536	359	C2H2-type 5.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	zinc ion binding			ovary(7)|large_intestine(2)|skin(2)	11	Esophageal squamous(110;0.0834)					CCAGGCGTGGTTCCTCAAGGG	0.647000													50	193					0	0	1	0	0
ZNF792	126375	broad.mit.edu	37	19	35448867	35448867	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:35448867A>G	uc002nxh.1	-	4	2279	c.1892T>C	c.(1891-1893)GTT>GCT	p.V631A		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	631					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TTCCTAGGGAACCTCCCCAGG	0.463000													13	16					0	0	1	0	0
ZNF792	126375	broad.mit.edu	37	19	35450201	35450201	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:35450201G>A	uc002nxh.1	-	4	945	c.558C>T	c.(556-558)AAC>AAT	p.N186N		NM_175872	NP_787068	Q3KQV3	ZN792_HUMAN	zinc finger protein 792	186					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_lung(56;4.18e-08)|Lung NSC(56;6.62e-08)|Esophageal squamous(110;0.162)		LUSC - Lung squamous cell carcinoma(66;0.0849)			TTCTGATAGGGTTGTGTACGT	0.537000													102	399					0	0	1	0	0
ZNF420	147923	broad.mit.edu	37	19	37618918	37618918	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:37618918G>A	uc002ofl.2	+	5	1240	c.1025G>A	c.(1024-1026)AGG>AAG	p.R342K		NM_144689	NP_653290	Q8TAQ5	ZN420_HUMAN	zinc finger protein 420	342	C2H2-type 8.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0			COAD - Colon adenocarcinoma(19;0.114)|Colorectal(19;0.177)			GAATGTGGAAGGGCCTTTATT	0.408000													27	56					0	0	1	0	0
ZNF573	126231	broad.mit.edu	37	19	38229491	38229491	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:38229491C>A	uc002ohe.2	-	4	1922	c.1900G>T	c.(1900-1902)GGT>TGT	p.G634C	ZNF573_uc010efs.2_Missense_Mutation_p.G547C|ZNF573_uc002ohd.2_Missense_Mutation_p.G632C|ZNF573_uc002ohf.2_Missense_Mutation_p.G576C|ZNF573_uc002ohg.2_Missense_Mutation_p.G546C	NM_152360	NP_689573	Q86YE8	ZN573_HUMAN	zinc finger protein 573	614					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)	1			UCEC - Uterine corpus endometrioid carcinoma (49;0.0775)|Lung(45;0.0813)|LUSC - Lung squamous cell carcinoma(53;0.146)			GGTTTCTCACCAGTATGAATT	0.403000													23	87					1.66031e-10	1.69937e-10	1	1	0
CLC	1178	broad.mit.edu	37	19	40224940	40224940	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:40224940G>A	uc002omh.2	-	3	362	c.286C>T	c.(286-288)CTG>TTG	p.L96L		NM_001828	NP_001819	Q05315	LPPL_HUMAN	Charcot-Leyden crystal protein	96	Galectin.				lipid catabolic process|multicellular organismal development		carboxylesterase activity|lysophospholipase activity|sugar binding				0	all_cancers(60;2.99e-06)|all_lung(34;4.7e-08)|Lung NSC(34;5.46e-08)|Ovarian(47;0.06)	Renal(1328;0.000147)|Hepatocellular(1079;0.0202)|Myeloproliferative disorder(2;0.0255)	Epithelial(26;6.43e-25)|OV - Ovarian serous cystadenocarcinoma(5;1.07e-24)|all cancers(26;8.38e-23)	GBM - Glioblastoma multiforme(1328;4.97e-06)|STAD - Stomach adenocarcinoma(1328;0.00655)		TTATCTGGCAGCACTGAGATG	0.552000													3	65					0	0	1	0	0
FCGBP	8857	broad.mit.edu	37	19	40364229	40364229	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:40364229C>T	uc002omp.3	-	31	14421	c.14413G>A	c.(14413-14415)GAG>AAG	p.E4805K		NM_003890	NP_003881	Q9Y6R7	FCGBP_HUMAN	Fc fragment of IgG binding protein precursor	4805						extracellular region	protein binding			ovary(4)|skin(4)|central_nervous_system(1)	9	all_cancers(60;6.03e-06)|all_lung(34;5.58e-08)|Lung NSC(34;6.62e-08)|Ovarian(47;0.06)		Epithelial(26;6.25e-23)|all cancers(26;1.13e-20)			TAGAAGACCTCGCCCAGTGGG	0.657000													13	54					0	0	1	0	0
LTBP4	8425	broad.mit.edu	37	19	41128920	41128920	+	Missense_Mutation	SNP	C	T	T	rs34051360		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:41128920C>T	uc002ooh.1	+	28	3751	c.3751C>T	c.(3751-3753)CGG>TGG	p.R1251W	LTBP4_uc002oog.1_Missense_Mutation_p.R1214W|LTBP4_uc002ooi.1_Missense_Mutation_p.R1184W|LTBP4_uc002ooj.1_Missense_Mutation_p.R124W|LTBP4_uc002ook.1_Missense_Mutation_p.R385W|LTBP4_uc002ool.1_Missense_Mutation_p.R263W|LTBP4_uc010xvp.1_Intron	NM_001042544	NP_001036009	Q8N2S1	LTBP4_HUMAN	latent transforming growth factor beta binding	1251					growth hormone secretion|multicellular organismal development|protein folding|regulation of cell differentiation|regulation of cell growth|regulation of proteolysis|regulation of transforming growth factor beta receptor signaling pathway	extracellular space|proteinaceous extracellular matrix	calcium ion binding|glycosaminoglycan binding|integrin binding|transforming growth factor beta binding|transforming growth factor beta receptor activity			central_nervous_system(1)	1			Lung(22;0.000158)|LUSC - Lung squamous cell carcinoma(20;0.000384)			CCTGAGCCTCCGGAGAGGTGA	0.493000													12	16					0	0	1	0	0
CYP2A7	1549	broad.mit.edu	37	19	41388010	41388010	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:41388010C>T	uc002opm.2	-	1	648	c.106G>A	c.(106-108)GGA>AGA	p.G36R	CYP2A7_uc002opo.2_Intron|CYP2A7_uc002opn.2_Missense_Mutation_p.G36R	NM_000764	NP_000755	P20853	CP2A7_HUMAN	cytochrome P450, family 2, subfamily A,	36						endoplasmic reticulum membrane|microsome	aromatase activity|electron carrier activity|heme binding|oxygen binding			ovary(1)|haematopoietic_and_lymphoid_tissue(1)|skin(1)	3			LUSC - Lung squamous cell carcinoma(20;0.000219)|Lung(22;0.000959)			GGGGTGGGTCCCGGAGGCAGC	0.587000													24	84					0	0	1	0	0
ATP1A3	478	broad.mit.edu	37	19	42489561	42489561	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:42489561G>A	uc002osg.2	-	7	775	c.621C>T	c.(619-621)TCC>TCT	p.S207S	ATP1A3_uc010xwf.1_Silent_p.S218S|ATP1A3_uc010xwg.1_Silent_p.S177S|ATP1A3_uc010xwh.1_Silent_p.S220S|ATP1A3_uc002osh.2_Silent_p.S207S	NM_152296	NP_689509	P13637	AT1A3_HUMAN	Na+/K+ -ATPase alpha 3 subunit	207	Cytoplasmic (Potential).				ATP biosynthetic process	endoplasmic reticulum|Golgi apparatus	ATP binding|metal ion binding|sodium:potassium-exchanging ATPase activity			ovary(1)|pancreas(1)	2						CGCCAGTCAGGGAGGAGTTGT	0.597000													26	115					0	0	1	0	0
ZNF225	7768	broad.mit.edu	37	19	44635090	44635090	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:44635090C>T	uc002oyj.1	+	5	566	c.323C>T	c.(322-324)TCA>TTA	p.S108L	ZNF225_uc010eje.1_Missense_Mutation_p.S25L|ZNF225_uc010ejf.1_Missense_Mutation_p.S108L	NM_013362	NP_037494	Q9UK10	ZN225_HUMAN	zinc finger protein 225	108					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0		Prostate(69;0.0352)|all_neural(266;0.202)				GAACAAATTTCAAGTGACTTA	0.413000													67	92					0	0	1	0	0
ZNF285	26974	broad.mit.edu	37	19	44891893	44891893	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:44891893C>T	uc002ozd.3	-	4	601	c.514G>A	c.(514-516)GAA>AAA	p.E172K	ZFP112_uc010xwz.1_Intron|ZNF285_uc010xxa.1_Missense_Mutation_p.E179K	NM_152354	NP_689567	Q96NJ3	ZN285_HUMAN	zinc finger protein 285	172					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(2)|skin(2)	4						AATTTCTCTTCCATGTAAATT	0.478000													41	67					0	0	1	0	0
RTN2	6253	broad.mit.edu	37	19	45997582	45997582	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:45997582G>A	uc002pcb.2	-	4	884	c.656C>T	c.(655-657)CCG>CTG	p.P219L	RTN2_uc002pcc.2_Missense_Mutation_p.P219L|RTN2_uc002pcd.2_RNA	NM_005619	NP_005610	O75298	RTN2_HUMAN	reticulon 2 isoform A	219						integral to endoplasmic reticulum membrane	signal transducer activity			ovary(3)	3		Ovarian(192;0.051)|all_neural(266;0.112)		OV - Ovarian serous cystadenocarcinoma(262;0.00829)|Epithelial(262;0.184)|GBM - Glioblastoma multiforme(486;0.246)		GGATGGGGACGGAGTACCGGC	0.622000													26	50					0	0	1	0	0
IRF2BP1	26145	broad.mit.edu	37	19	46387448	46387448	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:46387448G>A	uc002pds.1	-	1	1929	c.1585C>T	c.(1585-1587)CCC>TCC	p.P529S		NM_015649	NP_056464	Q8IU81	I2BP1_HUMAN	interferon regulatory factor 2 binding protein	529	Cys-rich.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus					0		all_neural(266;0.113)|Ovarian(192;0.127)		OV - Ovarian serous cystadenocarcinoma(262;0.00442)|GBM - Glioblastoma multiforme(486;0.0402)|Epithelial(262;0.231)		CGGGAGCAGGGAAAGCAGAAC	0.692000													15	59					0	0	1	0	0
CD37	951	broad.mit.edu	37	19	49842093	49842093	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:49842093A>G	uc002pnd.2	+	6	705	c.584A>G	c.(583-585)AAG>AGG	p.K195R	uc002pnb.1_Intron|CD37_uc002pnc.2_RNA|CD37_uc010yam.1_Missense_Mutation_p.K195R|CD37_uc010yan.1_Missense_Mutation_p.K127R|CD37_uc002pnf.3_Missense_Mutation_p.K167R|CD37_uc002pne.2_Missense_Mutation_p.K127R	NM_001774	NP_001765	P11049	CD37_HUMAN	CD37 antigen isoform A	195	Extracellular (Potential).					integral to membrane					0		all_lung(116;2.81e-06)|Lung NSC(112;5.89e-06)|all_neural(266;0.0189)|Ovarian(192;0.0392)		OV - Ovarian serous cystadenocarcinoma(262;0.00088)|GBM - Glioblastoma multiforme(486;0.0443)		ATCCTAGATAAGGTGATCTTG	0.602000													25	155					0	0	1	0	0
TSKS	60385	broad.mit.edu	37	19	50249809	50249810	+	Nonsense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:50249809_50249810CC>TT	uc002ppm.2	-	6	920_921	c.909_910GG>AA	c.(907-912)TGGGGA>TGAAGA	p.303_304WG>*R		NM_021733	NP_068379	Q9UJT2	TSKS_HUMAN	testis-specific kinase substrate	303_304							protein binding			large_intestine(1)|skin(1)	2		all_lung(116;3.24e-07)|Lung NSC(112;1.6e-06)|all_neural(266;0.0459)|Ovarian(192;0.0728)		OV - Ovarian serous cystadenocarcinoma(262;0.00153)|GBM - Glioblastoma multiforme(134;0.0145)		GGCCCCATTCCCCAGCCTGCGG	0.723000													27	48					0	0	1	0	0
ATF5	22809	broad.mit.edu	37	19	50434213	50434213	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:50434213C>T	uc010enq.1	+	3	673	c.106C>T	c.(106-108)CCC>TCC	p.P36S	IL4I1_uc002pqv.1_5'Flank|IL4I1_uc010eno.1_5'Flank|IL4I1_uc002pqw.1_5'Flank|IL4I1_uc002pqu.1_5'Flank|NUP62_uc002pqx.2_5'Flank|NUP62_uc002pqy.2_5'Flank|NUP62_uc002pqz.2_5'Flank|NUP62_uc002pra.2_5'Flank|NUP62_uc002prb.2_5'Flank|NUP62_uc002prc.2_5'Flank|ATF5_uc002prd.2_Missense_Mutation_p.P36S	NM_012068	NP_036200	Q9Y2D1	ATF5_HUMAN	activating transcription factor 5	36					regulation of transcription from RNA polymerase II promoter	cytoplasm	protein dimerization activity|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity|transcription corepressor activity			skin(2)	2		all_lung(116;0.00318)|all_neural(266;0.107)|Ovarian(192;0.17)		GBM - Glioblastoma multiforme(134;0.00221)|OV - Ovarian serous cystadenocarcinoma(262;0.017)		GGCCCCTGCCCCCCTGGCTCC	0.697000													10	11					0	0	1	0	0
NAPSA	9476	broad.mit.edu	37	19	50864341	50864341	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:50864341G>A	uc002prx.2	-	5	578	c.525C>T	c.(523-525)AGC>AGT	p.S175S	NR1H2_uc002prv.3_Intron	NM_004851	NP_004842	O96009	NAPSA_HUMAN	napsin A preproprotein	175					proteolysis	extracellular region	aspartic-type endopeptidase activity				0		all_neural(266;0.057)		OV - Ovarian serous cystadenocarcinoma(262;0.00743)|GBM - Glioblastoma multiforme(134;0.0183)		CGAAGACCAGGCTGGGCTCCC	0.527000													28	127					0	0	1	0	0
SIGLEC5	8778	broad.mit.edu	37	19	52130494	52130494	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:52130494C>T	uc002pxe.2	-	7	1429	c.1290G>A	c.(1288-1290)TCG>TCA	p.S430S		NM_003830	NP_003821	O15389	SIGL5_HUMAN	sialic acid binding Ig-like lectin 5 precursor	430	Extracellular (Potential).				cell adhesion	integral to membrane	sugar binding			skin(2)|breast(1)|central_nervous_system(1)	4		all_neural(266;0.0726)		GBM - Glioblastoma multiforme(134;0.00124)|OV - Ovarian serous cystadenocarcinoma(262;0.0218)		TCCCGAGGTTCGATCTCCCTG	0.557000													11	53					0	0	1	0	0
FPR2	2358	broad.mit.edu	37	19	52272895	52272895	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:52272895C>T	uc002pxr.2	+	2	1029	c.984C>T	c.(982-984)GAC>GAT	p.D328D	FPR2_uc002pxs.3_Silent_p.D328D|FPR2_uc010epf.2_Silent_p.D328D	NM_001005738	NP_001005738	P25090	FPR2_HUMAN	formyl peptide receptor-like 1	328	Cytoplasmic (Potential).				cell adhesion|cellular component movement|chemotaxis|inflammatory response	integral to membrane|plasma membrane	N-formyl peptide receptor activity			lung(3)|ovary(1)	4						TGTCTGAGGACTCAGCCCCAA	0.547000													17	79					0	0	1	0	0
ZNF160	90338	broad.mit.edu	37	19	53571340	53571341	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:53571340_53571341GG>AA	uc010eqk.2	-	7	2862_2863	c.2446_2447CC>TT	c.(2446-2448)CCT>TTT	p.P816F	ZNF160_uc002qaq.3_Missense_Mutation_p.P816F|ZNF160_uc002qar.3_Missense_Mutation_p.P816F	NM_001102603	NP_001096073	Q9HCG1	ZN160_HUMAN	zinc finger protein 160	816					hemopoiesis|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			central_nervous_system(1)	1				GBM - Glioblastoma multiforme(134;0.02)		TCATTTGTAAGGTTTCTCTCCG	0.416000													42	198					0	0	1	0	0
BIRC8	112401	broad.mit.edu	37	19	53793362	53793362	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:53793362C>T	uc002qbk.2	-	1	1514	c.266G>A	c.(265-267)GGA>GAA	p.G89E		NM_033341	NP_203127	Q96P09	BIRC8_HUMAN	baculoviral IAP repeat-containing 8	89					apoptosis		zinc ion binding			lung(1)	1				GBM - Glioblastoma multiforme(134;0.00304)		TACCAGAGCTCCCTCAAGTGA	0.393000													40	82					0	0	1	0	0
DPRX	503834	broad.mit.edu	37	19	54140172	54140172	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:54140172C>T	uc002qcf.1	+	3	557	c.506C>T	c.(505-507)TCC>TTC	p.S169F		NM_001012728	NP_001012746	A6NFQ7	DPRX_HUMAN	divergent-paired related homeobox	169						nucleus	sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity				0	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(134;0.013)		ATTTTGGAATCCCAAGTTTGC	0.438000													40	124					0	0	1	0	0
LILRA3	11026	broad.mit.edu	37	19	54803116	54803116	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:54803116C>T	uc002qfd.2	-	4	626	c.561G>A	c.(559-561)GTG>GTA	p.V187V	LILRA6_uc002qew.1_Intron|LILRA3_uc010erk.2_Intron	NM_006865	NP_006856	Q8N6C8	LIRA3_HUMAN	leukocyte immunoglobulin-like receptor,	187	Ig-like C2-type 2.				defense response	extracellular region|plasma membrane	antigen binding|receptor activity			ovary(1)	1	Ovarian(34;0.19)			GBM - Glioblastoma multiforme(193;0.105)		GACTTGGGCTCACGGGGCCCA	0.587000													59	24					0	0	1	0	0
KIR3DL3	115653	broad.mit.edu	37	19	55246770	55246770	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:55246770C>T	uc002qgu.1	+	6	1018	c.1000C>T	c.(1000-1002)CCC>TCC	p.P334S	KIR2DL3_uc002qgv.2_Intron	NM_153443	NP_703144	Q8N743	KI3L3_HUMAN	killer cell immunoglobulin-like receptor, three	334	Helical; (Potential).					integral to membrane|plasma membrane	receptor activity			ovary(2)	2				GBM - Glioblastoma multiforme(193;0.0192)		GGTCATCATCCCCTTTGCTAT	0.498000													36	74					0	0	1	0	0
KIR3DP1	768329	broad.mit.edu	37	19	55297937	55297937	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:55297937C>T	uc010yfi.1	+	3	94	c.93C>T	c.(91-93)CTC>CTT	p.L31L	KIR2DS4_uc010yfj.1_Intron|KIR2DS4_uc010yfk.1_Intron|KIR2DL4_uc010yfl.1_Intron	NM_001015070	NP_001015070			killer-cell Ig-like receptor												0				GBM - Glioblastoma multiforme(193;0.0192)		AGCCCTTCCTCTCTGCCTGGC	0.562000													11	49					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56423088	56423088	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:56423088C>T	uc010ygg.1	-	5	2120	c.2095G>A	c.(2095-2097)GAC>AAC	p.D699N		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	699							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		ATTTCCAAGTCCCTTTCAAGG	0.403000													22	114					0	0	1	0	0
NLRP13	126204	broad.mit.edu	37	19	56435995	56435995	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:56435995G>A	uc010ygg.1	-	3	443	c.418C>T	c.(418-420)CCA>TCA	p.P140S		NM_176810	NP_789780	Q86W25	NAL13_HUMAN	NACHT, leucine rich repeat and PYD containing	140							ATP binding			skin(4)|ovary(3)|pancreas(1)|lung(1)	9		Colorectal(82;3.48e-05)|Ovarian(87;0.0481)|Renal(1328;0.218)		GBM - Glioblastoma multiforme(193;0.0642)		TCTTGGTTTGGATCTTGGCAT	0.423000													19	77					0	0	1	0	0
NLRP8	126205	broad.mit.edu	37	19	56485170	56485170	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:56485170G>T	uc002qmh.2	+	7	2758	c.2687G>T	c.(2686-2688)TGT>TTT	p.C896F	NLRP8_uc010etg.2_Missense_Mutation_p.C877F	NM_176811	NP_789781	Q86W28	NALP8_HUMAN	NLR family, pyrin domain containing 8	896						cytoplasm	ATP binding			ovary(4)|breast(3)|central_nervous_system(2)|skin(2)|large_intestine(1)|kidney(1)	13		Colorectal(82;0.000147)|Ovarian(87;0.17)		GBM - Glioblastoma multiforme(193;0.0695)		CACCTGAGATGTCCTCTGCAG	0.468000													51	63					2.89935e-36	2.99933e-36	1	1	0
USP29	57663	broad.mit.edu	37	19	57641025	57641025	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:57641025C>T	uc002qny.2	+	4	1338	c.982C>T	c.(982-984)CTT>TTT	p.L328F		NM_020903	NP_065954	Q9HBJ7	UBP29_HUMAN	ubiquitin specific peptidase 29	328					protein modification process|ubiquitin-dependent protein catabolic process		cysteine-type peptidase activity|protein binding|ubiquitin thiolesterase activity			lung(6)|ovary(2)|breast(2)|pancreas(1)	11		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		CTTTGAGGCTCTTATTATGAC	0.373000													20	97					0	0	1	0	0
AURKC	6795	broad.mit.edu	37	19	57743497	57743497	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:57743497C>T	uc002qoe.2	+	3	390	c.201C>T	c.(199-201)TTC>TTT	p.F67F	AURKC_uc002qoc.2_Silent_p.F48F|AURKC_uc002qod.2_Silent_p.F33F|AURKC_uc010etv.2_Silent_p.F64F	NM_001015878	NP_001015878	Q9UQB9	AURKC_HUMAN	aurora kinase C isoform 1	67	Protein kinase.				cell cycle|cytokinesis	condensed chromosome|cytoplasm|midbody|spindle midzone	ATP binding|protein serine/threonine kinase activity			lung(4)|ovary(2)	6		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Ovarian(87;0.0822)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.0122)		AAAGCCATTTCATTGTGGCCC	0.542000													17	27					0	0	1	0	0
ZNF211	10520	broad.mit.edu	37	19	58152747	58152747	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr19:58152747C>T	uc002qpq.2	+	3	1073	c.893C>T	c.(892-894)TCC>TTC	p.S298F	ZNF211_uc010yhb.1_Missense_Mutation_p.S302F|ZNF211_uc002qpp.2_Missense_Mutation_p.S311F|ZNF211_uc002qpr.2_Missense_Mutation_p.S362F|ZNF211_uc002qps.2_Missense_Mutation_p.S363F|ZNF211_uc002qpt.2_Missense_Mutation_p.S310F|ZNF211_uc010yhc.1_Missense_Mutation_p.S310F|ZNF211_uc010yhd.1_Missense_Mutation_p.S237F|ZNF211_uc010yhe.1_Missense_Mutation_p.S289F	NM_198855	NP_942152	Q13398	ZN211_HUMAN	zinc finger protein 211 isoform 2	298	C2H2-type 3.					nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(2)	2		Colorectal(82;5.46e-05)|all_neural(62;0.0218)|Breast(46;0.0389)|Ovarian(87;0.0443)|Renal(1328;0.157)		UCEC - Uterine corpus endometrioid carcinoma (67;0.168)|GBM - Glioblastoma multiforme(193;0.026)		ACCTACTACTCCAGTTTCATT	0.418000													17	72					0	0	1	0	0
RPS7	6201	broad.mit.edu	37	2	3624207	3624207	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:3624207T>C	uc002qxw.2	+	4	384	c.278T>C	c.(277-279)GTC>GCC	p.V93A	RPS7_uc002qxx.2_Missense_Mutation_p.V93A|RPS7_uc002qxy.2_5'Flank	NM_001011	NP_001002	P62081	RS7_HUMAN	ribosomal protein S7	93					endocrine pancreas development|ribosomal small subunit biogenesis|rRNA processing|translational elongation|translational termination|viral transcription	90S preribosome|cytosolic small ribosomal subunit|nucleolus|small-subunit processome	protein binding|RNA binding|structural constituent of ribosome				0	Acute lymphoblastic leukemia(172;0.0627)|all_hematologic(175;0.093)			OV - Ovarian serous cystadenocarcinoma(76;0.0963)|Epithelial(75;0.208)		AAGCATGTCGTCTTTATCGCT	0.403000													38	388					0	0	1	0	0
KCNS3	3790	broad.mit.edu	37	2	18112584	18112584	+	Silent	SNP	C	T	T	rs141345709	byFrequency	TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:18112584C>T	uc002rcv.2	+	3	760	c.309C>T	c.(307-309)ATC>ATT	p.I103I	KCNS3_uc002rcw.2_Silent_p.I103I	NM_002252	NP_002243	Q9BQ31	KCNS3_HUMAN	potassium voltage-gated channel	103	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	Golgi apparatus|voltage-gated potassium channel complex	delayed rectifier potassium channel activity|potassium channel regulator activity			ovary(4)	4	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.158)					GCCAGGAGATCGAGTACTGGG	0.478000													65	110					0	0	1	0	0
NT5C1B	93034	broad.mit.edu	37	2	18765976	18765976	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:18765976G>A	uc002rcz.2	-	5	811	c.707C>T	c.(706-708)TCG>TTG	p.S236L	NT5C1B_uc002rcy.2_Missense_Mutation_p.S236L|NT5C1B_uc010exr.2_Missense_Mutation_p.S178L|NT5C1B_uc010yju.1_Missense_Mutation_p.S176L|NT5C1B_uc002rda.2_Missense_Mutation_p.S176L|NT5C1B_uc010yjv.1_Missense_Mutation_p.S253L|NT5C1B_uc010yjw.1_Missense_Mutation_p.S219L|NT5C1B_uc010exs.2_Missense_Mutation_p.S238L|NT5C1B_uc002rdb.1_Missense_Mutation_p.S28L	NM_001002006	NP_001002006	Q96P26	5NT1B_HUMAN	5' nucleotidase, cytosolic IB isoform 1	236					purine base metabolic process|purine nucleotide catabolic process	cytosol	5'-nucleotidase activity|magnesium ion binding|nucleotide binding			skin(2)|ovary(1)	3	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.177)	Ovarian(717;0.208)				GGACGTGCGCGAATATTCCAG	0.662000													13	41					0	0	1	0	0
PUM2	23369	broad.mit.edu	37	2	20454681	20454681	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:20454681T>G	uc002rds.1	-	18	2836	c.2813A>C	c.(2812-2814)AAA>ACA	p.K938T	PUM2_uc002rdq.1_Missense_Mutation_p.K317T|PUM2_uc002rdt.1_Missense_Mutation_p.K938T|PUM2_uc002rdr.2_Missense_Mutation_p.K798T|PUM2_uc010yjy.1_Missense_Mutation_p.K859T|PUM2_uc002rdu.1_Missense_Mutation_p.K938T|PUM2_uc010yjz.1_Missense_Mutation_p.K877T	NM_015317	NP_056132	Q8TB72	PUM2_HUMAN	pumilio homolog 2	940	PUM-HD.|Pumilio 6.				regulation of translation	perinuclear region of cytoplasm|stress granule	protein binding|RNA binding			ovary(1)	1	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)					GGAAACAATTTTGCTCTTGTC	0.363000													8	67					0	0	1	0	0
APOB	338	broad.mit.edu	37	2	21229365	21229366	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:21229365_21229366CC>TT	uc002red.2	-	26	10502_10503	c.10374_10375GG>AA	c.(10372-10377)ATGGAA>ATAAAA	p.3458_3459ME>IK		NM_000384	NP_000375	P04114	APOB_HUMAN	apolipoprotein B precursor	3458_3459	Heparin-binding.				cholesterol homeostasis|cholesterol metabolic process|leukocyte migration|low-density lipoprotein particle clearance|low-density lipoprotein particle remodeling|platelet activation|positive regulation of cholesterol storage|positive regulation of macrophage derived foam cell differentiation|receptor-mediated endocytosis|response to virus	chylomicron remnant|clathrin-coated endocytic vesicle membrane|endoplasmic reticulum lumen|endoplasmic reticulum membrane|endosome lumen|endosome membrane|intermediate-density lipoprotein particle|low-density lipoprotein particle|mature chylomicron|microsome|plasma membrane|very-low-density lipoprotein particle	cholesterol transporter activity|enzyme binding|heparin binding|low-density lipoprotein particle receptor binding|phospholipid binding|protein heterodimerization activity			ovary(11)|skin(9)|central_nervous_system(3)|large_intestine(2)|upper_aerodigestive_tract(1)|pancreas(1)	27	Acute lymphoblastic leukemia(172;0.155)|all_hematologic(175;0.215)				Atorvastatin(DB01076)	TACTTAAATTCCATGGAGGAAG	0.386000													55	142					0	0	1	0	0
PLB1	151056	broad.mit.edu	37	2	28821530	28821530	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:28821530G>A	uc002rmb.1	+	35	2377	c.2377G>A	c.(2377-2379)GAG>AAG	p.E793K	PLB1_uc010ezj.1_Missense_Mutation_p.E782K	NM_153021	NP_694566	Q6P1J6	PLB1_HUMAN	phospholipase B1 precursor	793	4 X 308-326 AA approximate repeats.|Extracellular (Potential).|3.				lipid catabolic process|retinoid metabolic process|steroid metabolic process	apical plasma membrane|integral to membrane	lysophospholipase activity|phospholipase A2 activity|retinyl-palmitate esterase activity			ovary(4)|large_intestine(2)|skin(2)|breast(1)	9	Acute lymphoblastic leukemia(172;0.155)					TATCCTTCGGGAGTTTAACAG	0.517000													29	162					0	0	1	0	0
C2orf71	388939	broad.mit.edu	37	2	29294548	29294548	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:29294548C>T	uc002rmt.1	-	1	2580	c.2580G>A	c.(2578-2580)AAG>AAA	p.K860K		NM_001029883	NP_001025054	A6NGG8	CB071_HUMAN	hypothetical protein LOC388939	860					response to stimulus|visual perception	photoreceptor outer segment				skin(1)	1						CCTGGGTTTCCTTGGGGGAGT	0.607000													39	82					0	0	1	0	0
FSHR	2492	broad.mit.edu	37	2	49190891	49190891	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:49190891C>T	uc002rww.2	-	10	1143	c.1069G>A	c.(1069-1071)GAA>AAA	p.E357K	FSHR_uc002rwx.2_Missense_Mutation_p.E295K|FSHR_uc010fbn.2_Missense_Mutation_p.E331K	NM_000145	NP_000136	P23945	FSHR_HUMAN	follicle stimulating hormone receptor isoform 1	357	Extracellular (Potential).				female gamete generation|male gonad development|spermatogenesis	integral to membrane|plasma membrane	follicle-stimulating hormone receptor activity|protein binding			ovary(4)|lung(2)|central_nervous_system(1)|skin(1)	8		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.181)	Lung(47;0.101)|LUSC - Lung squamous cell carcinoma(58;0.151)		Choriogonadotropin alfa(DB00097)|Follitropin beta(DB00066)|Menotropins(DB00032)|Urofollitropin(DB00094)	ATGATATCTTCACATGGGTTG	0.458000									Gonadal_Dysgenesis_46_XX				45	81					0	0	1	0	0
NRXN1	9378	broad.mit.edu	37	2	51254660	51254660	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:51254660C>T	uc010fbq.2	-	2	2229	c.752G>A	c.(751-753)CGC>CAC	p.R251H	NRXN1_uc002rxe.3_Missense_Mutation_p.R251H|NRXN1_uc002rxd.1_Missense_Mutation_p.R251H	NM_001135659	NP_001129131	P58400	NRX1B_HUMAN	neurexin 1 isoform alpha2 precursor	Error:Variant_position_missing_in_P58400_after_alignment					angiogenesis|neuron cell-cell adhesion|neuronal signal transduction	cell surface|endocytic vesicle|integral to membrane|presynaptic membrane	cell adhesion molecule binding|receptor binding			ovary(2)	2		all_hematologic(82;0.152)|Acute lymphoblastic leukemia(82;0.192)	Lung(47;0.0813)|LUSC - Lung squamous cell carcinoma(58;0.116)			GTCCTTGCCGCGGAAGCCGGT	0.746000													21	61					0	0	1	0	0
PLEK	5341	broad.mit.edu	37	2	68607553	68607553	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:68607553G>A	uc002sen.3	+	2	298	c.136G>A	c.(136-138)GGA>AGA	p.G46R	PLEK_uc010fde.2_Missense_Mutation_p.G46R	NM_002664	NP_002655	P08567	PLEK_HUMAN	pleckstrin	46	PH 1.				actin cytoskeleton reorganization|cortical actin cytoskeleton organization|hemopoietic progenitor cell differentiation|inhibition of phospholipase C activity involved in G-protein coupled receptor signaling pathway|integrin-mediated signaling pathway|negative regulation of calcium-mediated signaling|negative regulation of inositol phosphate biosynthetic process|phosphatidylinositol metabolic process|platelet aggregation|positive regulation of actin filament bundle assembly|positive regulation of actin filament depolymerization|positive regulation of inositol-polyphosphate 5-phosphatase activity|positive regulation of integrin activation|positive regulation of platelet activation|protein kinase C signaling cascade|protein secretion by platelet|regulation of cell diameter|ruffle organization|thrombin receptor signaling pathway|vesicle docking involved in exocytosis	cytosol|extracellular region|membrane fraction|ruffle membrane|soluble fraction	phosphatidylinositol-3,4-bisphosphate binding|protein homodimerization activity|protein kinase C binding			ovary(1)	1		Ovarian(717;0.0129)		STAD - Stomach adenocarcinoma(1183;0.00159)|READ - Rectum adenocarcinoma(193;0.0419)		CAGCCCCAAAGGAATGATCCC	0.458000													12	103					0	0	1	0	0
DYSF	8291	broad.mit.edu	37	2	71801457	71801457	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:71801457G>A	uc002sie.2	+	30	3680	c.3304G>A	c.(3304-3306)GAG>AAG	p.E1102K	DYSF_uc010feg.2_Missense_Mutation_p.E1133K|DYSF_uc010feh.2_Missense_Mutation_p.E1088K|DYSF_uc002sig.3_Missense_Mutation_p.E1088K|DYSF_uc010yqx.1_RNA|DYSF_uc010fee.2_Missense_Mutation_p.E1102K|DYSF_uc010fef.2_Missense_Mutation_p.E1119K|DYSF_uc010fei.2_Missense_Mutation_p.E1119K|DYSF_uc010fek.2_Missense_Mutation_p.E1120K|DYSF_uc010fej.2_Missense_Mutation_p.E1089K|DYSF_uc010fel.2_Missense_Mutation_p.E1089K|DYSF_uc010feo.2_Missense_Mutation_p.E1134K|DYSF_uc010fem.2_Missense_Mutation_p.E1103K|DYSF_uc010fen.2_Missense_Mutation_p.E1120K|DYSF_uc002sif.2_Missense_Mutation_p.E1103K|DYSF_uc010yqy.1_5'Flank	NM_003494	NP_003485	O75923	DYSF_HUMAN	dysferlin isoform 8	1102	Cytoplasmic (Potential).					cytoplasmic vesicle membrane|integral to membrane|sarcolemma	calcium-dependent phospholipid binding			ovary(3)|breast(2)|pancreas(1)|skin(1)	7						GGAGCCACTGGAGAAGACGGG	0.622000													45	79					0	0	1	0	0
ACTG2	72	broad.mit.edu	37	2	74128540	74128540	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:74128540C>T	uc002sjw.2	+	2	224	c.102C>T	c.(100-102)TCC>TCT	p.S34S	ACTG2_uc010fex.1_Silent_p.S34S|ACTG2_uc010fey.2_Silent_p.S34S|ACTG2_uc010yrn.1_Silent_p.S34S	NM_001615	NP_001606	P63267	ACTH_HUMAN	actin, gamma 2 propeptide	34					muscle contraction	cytoskeleton|cytosol	ATP binding				0						TCTTCCCCTCCATTGTGGGCC	0.622000													32	85					0	0	1	0	0
REG3A	5068	broad.mit.edu	37	2	79385861	79385861	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:79385861C>T	uc002sod.1	-	2	366	c.111G>A	c.(109-111)CGG>CGA	p.R37R	REG3A_uc002soe.1_Silent_p.R37R|REG3A_uc002sof.1_Silent_p.R37R	NM_138938	NP_620355	Q06141	REG3A_HUMAN	pancreatitis-associated protein precursor	37					acute-phase response|cell proliferation|heterophilic cell-cell adhesion|multicellular organismal development	cytoplasm|extracellular space|soluble fraction	sugar binding			skin(1)	1						GACAGCGGATCCGTGCAGAGG	0.547000													17	36					0	0	1	0	0
LRRTM1	347730	broad.mit.edu	37	2	80529463	80529463	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:80529463C>T	uc002sok.1	-	2	1752	c.1482G>A	c.(1480-1482)CCG>CCA	p.P494P	CTNNA2_uc010yse.1_Intron|CTNNA2_uc010ysf.1_Intron|CTNNA2_uc010ysg.1_Intron|CTNNA2_uc010ysh.1_Intron|CTNNA2_uc010ysi.1_5'Flank|LRRTM1_uc002soj.3_RNA	NM_178839	NP_849161	Q86UE6	LRRT1_HUMAN	leucine rich repeat transmembrane neuronal 1	494	Cytoplasmic (Potential).					axon|endoplasmic reticulum membrane|growth cone|integral to membrane				ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5						CAATGTGGTTCGGTTTGTAAT	0.547000										HNSCC(69;0.2)			19	48					0	0	1	0	0
TCF7L1	83439	broad.mit.edu	37	2	85531453	85531453	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:85531453G>A	uc002soy.2	+	7	911	c.837G>A	c.(835-837)TCG>TCA	p.S279S		NM_031283	NP_112573	Q9HCS4	TF7L1_HUMAN	HMG-box transcription factor TCF-3	279	Pro-rich.				chromatin organization|regulation of Wnt receptor signaling pathway|Wnt receptor signaling pathway	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity			lung(1)|breast(1)|central_nervous_system(1)	3						TGAACGCCTCGATGTCCAGGT	0.592000													51	106					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	89309717	89309717	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:89309717C>T	uc010ytr.1	-	74		c.6630G>A			uc002stl.2_Intron					Parts of antibodies, mostly variable regions.																		GACTCTGTCTCCTACAGATGC	0.463000													48	190					0	0	1	0	0
Unknown	0	broad.mit.edu	37	2	90212098	90212098	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:90212098C>T	uc010fhm.2	+	26		c.3522C>T								Parts of antibodies, mostly variable regions.																		TGGCCAGGCTCCCAGGCTCCT	0.592000													10	78					0	0	1	0	0
LOC654342	654342	broad.mit.edu	37	2	91843393	91843393	+	Splice_Site	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:91843393C>T	uc002sts.3	-	2		c.176_splice	c.e2+1		LOC654342_uc002stt.2_Splice_Site|LOC654342_uc010yub.1_Splice_Site					Homo sapiens cDNA clone IMAGE:4801360.												0						GGGGACCTTACCTTGCAGGAT	0.597000													13	42					0	0	1	0	0
NEURL3	93082	broad.mit.edu	37	2	97166148	97166148	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:97166148C>T	uc010yuo.1	-	2	613	c.542G>A	c.(541-543)GGG>GAG	p.G181E	NEURL3_uc010fhx.2_Intron|NEURL3_uc002swc.2_Intron					SubName: Full=cDNA FLJ54814;												0						TCCCCACCTCCCCTGCGGGGT	0.647000													7	25					0	0	1	0	0
ARID5A	10865	broad.mit.edu	37	2	97215139	97215139	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:97215139T>C	uc002swe.2	+	3	302	c.202T>C	c.(202-204)TTC>CTC	p.F68L	ARID5A_uc010yuq.1_5'UTR|ARID5A_uc002swf.2_Intron|ARID5A_uc002swg.2_Intron	NM_212481	NP_997646	Q03989	ARI5A_HUMAN	AT rich interactive domain 5A	68	ARID.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleolus	DNA binding				0						CCTCTACAAGTTCATGAAGGA	0.498000													61	122					0	0	1	0	0
AFF3	3899	broad.mit.edu	37	2	100623280	100623280	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:100623280C>T	uc002tag.2	-	6	923	c.687G>A	c.(685-687)CAG>CAA	p.Q229Q	AFF3_uc002taf.2_Silent_p.Q254Q|AFF3_uc010fiq.1_Silent_p.Q229Q|AFF3_uc010yvr.1_Silent_p.Q383Q|AFF3_uc002tah.1_Silent_p.Q254Q|AFF3_uc010fir.1_Silent_p.Q306Q|AFF3_uc002tai.2_Silent_p.Q151Q	NM_002285	NP_002276	P51826	AFF3_HUMAN	AF4/FMR2 family, member 3 isoform 1	229					multicellular organismal development|regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding			ovary(2)|pancreas(1)|lung(1)|kidney(1)|skin(1)	6						CGGTCGGTTTCTGCTGGACCA	0.577000													35	65					0	0	1	0	0
TBC1D8	11138	broad.mit.edu	37	2	101706790	101706790	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:101706790G>A	uc010fiv.2	-	2	295	c.164C>T	c.(163-165)TCC>TTC	p.S55F	TBC1D8_uc010yvw.1_Missense_Mutation_p.S55F	NM_001102426	NP_001095896	O95759	TBCD8_HUMAN	TBC1 domain family, member 8	55					blood circulation|positive regulation of cell proliferation	intracellular|membrane	calcium ion binding|Rab GTPase activator activity			ovary(3)	3						CCGTGCATTGGAATCCAACAC	0.522000													29	70					0	0	1	0	0
IL1R2	7850	broad.mit.edu	37	2	102632511	102632511	+	Nonsense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:102632511A>T	uc002tbm.2	+	4	740	c.511A>T	c.(511-513)AAG>TAG	p.K171*	IL1R2_uc002tbn.2_Nonsense_Mutation_p.K171*|IL1R2_uc002tbo.1_Nonsense_Mutation_p.K171*	NM_004633	NP_004624	P27930	IL1R2_HUMAN	interleukin 1 receptor, type II precursor	171	Extracellular (Potential).|Ig-like C2-type 2.			K -> R (in Ref. 2; AAD00242).	immune response	integral to membrane|plasma membrane	interleukin-1, Type II, blocking receptor activity			ovary(1)|breast(1)	2					Anakinra(DB00026)	TCAATGGTACAAGGTACGGCT	0.358000													8	53					0	0	1	0	0
TGFBRAP1	9392	broad.mit.edu	37	2	105897176	105897176	+	Missense_Mutation	SNP	C	T	T	rs56016004	by1000genomes	TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:105897176C>T	uc002tcq.2	-	6	1210	c.1126G>A	c.(1126-1128)GGC>AGC	p.G376S	TGFBRAP1_uc010fjc.2_Missense_Mutation_p.G146S|TGFBRAP1_uc002tcr.3_Missense_Mutation_p.G376S	NM_004257	NP_004248	Q8WUH2	TGFA1_HUMAN	transforming growth factor, beta receptor	376					regulation of transcription, DNA-dependent|transforming growth factor beta receptor signaling pathway	cytoplasm|membrane	SMAD binding|small GTPase regulator activity|transforming growth factor beta receptor binding			central_nervous_system(1)|skin(1)	2						TCAAGCTGGCCGCTTCTGCAA	0.542000													6	23					0	0	1	0	0
MERTK	10461	broad.mit.edu	37	2	112785951	112785952	+	Missense_Mutation	DNP	GG	CA	CA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:112785951_112785952GG>CA	uc002thk.1	+	19	2632_2633	c.2510_2511GG>CA	c.(2509-2511)TGG>TCA	p.W837S	MERTK_uc002thl.1_Missense_Mutation_p.W661S	NM_006343	NP_006334	Q12866	MERTK_HUMAN	MER receptor tyrosine kinase precursor	837	Protein kinase.|Cytoplasmic (Potential).				cell surface receptor linked signaling pathway|cell-cell signaling|leukocyte migration	integral to plasma membrane|soluble fraction	ATP binding|transmembrane receptor protein tyrosine kinase activity			lung(6)|upper_aerodigestive_tract(1)|stomach(1)|kidney(1)	9						TACTCTTGCTGGAGAACCGATC	0.441000													27	43					0	0	1	0	0
IL1F5	26525	broad.mit.edu	37	2	113820095	113820095	+	Silent	SNP	G	A	A	rs149664037		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:113820095G>A	uc002tis.2	+	5	442	c.309G>A	c.(307-309)CGG>CGA	p.R103R	IL1F5_uc002tit.2_Silent_p.R103R	NM_173170	NP_775262	Q9UBH0	I36RA_HUMAN	interleukin 1 family, member 5	103						extracellular space	cytokine activity|interleukin-1 receptor antagonist activity				0						TCTACCGGCGGGACATGGGGC	0.617000													23	78					0	0	1	0	0
PSD4	23550	broad.mit.edu	37	2	113940619	113940620	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:113940619_113940620CC>TT	uc002tjc.2	+	2	769_770	c.586_587CC>TT	c.(586-588)CCC>TTC	p.P196F	PSD4_uc002tjd.2_5'UTR|PSD4_uc002tje.2_Missense_Mutation_p.P195F|PSD4_uc002tjf.2_5'Flank	NM_012455	NP_036587	Q8NDX1	PSD4_HUMAN	pleckstrin and Sec7 domain containing 4	196					regulation of ARF protein signal transduction	cytoplasm|plasma membrane	ARF guanyl-nucleotide exchange factor activity			ovary(2)	2						TGTGGACCTCCCCGGGGACACG	0.639000													24	42					0	0	1	0	0
STEAP3	55240	broad.mit.edu	37	2	120003510	120003510	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:120003510C>T	uc002tlp.2	+	3	595	c.438C>T	c.(436-438)TTC>TTT	p.F146F	STEAP3_uc002tlq.2_Silent_p.F156F|STEAP3_uc002tlr.2_Silent_p.F146F|STEAP3_uc010fle.2_Silent_p.F146F	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	146	Cytoplasmic (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						TCAAGGCCTTCAATGTCATCT	0.512000													19	163					0	0	1	0	0
STEAP3	55240	broad.mit.edu	37	2	120005455	120005455	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:120005455C>T	uc002tlp.2	+	4	850	c.693C>T	c.(691-693)TTC>TTT	p.F231F	STEAP3_uc002tlq.2_Silent_p.F241F|STEAP3_uc002tlr.2_Silent_p.F231F|STEAP3_uc010fle.2_Silent_p.F231F	NM_018234	NP_060704	Q658P3	STEA3_HUMAN	dudulin 2 isoform b	231	Vesicular (Potential).				apoptosis|cell cycle|cellular iron ion homeostasis|protein secretion|transferrin transport|transmembrane transport	endosome membrane|integral to membrane|multivesicular body	electron carrier activity|flavin adenine dinucleotide binding|iron ion binding			central_nervous_system(2)|skin(1)	3						CCTACAACTTCGTCCGGGACG	0.637000													62	118					0	0	1	0	0
SCTR	6344	broad.mit.edu	37	2	120204447	120204447	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:120204447G>A	uc002tma.2	-	11	1254	c.1028C>T	c.(1027-1029)TCC>TTC	p.S343F	SCTR_uc002tlz.2_Missense_Mutation_p.S165F	NM_002980	NP_002971	P47872	SCTR_HUMAN	secretin receptor precursor	343	Cytoplasmic (Potential).				digestion|excretion	integral to plasma membrane	secretin receptor activity			ovary(1)|central_nervous_system(1)|skin(1)	3					Secretin(DB00021)	CAGGAGAGTGGACCTGGCCAG	0.592000													44	75					0	0	1	0	0
PCDP1	200373	broad.mit.edu	37	2	120383201	120383201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:120383201C>T	uc002tmb.2	+	16	1687	c.595C>T	c.(595-597)CGT>TGT	p.R199C	PCDP1_uc010yyq.1_Missense_Mutation_p.R329C	NM_001029996	NP_001025167	Q4G0U5	PCDP1_HUMAN	primary ciliary dyskinesia protein 1	485						cilium	calmodulin binding				0	Colorectal(110;0.196)					GAGTGCTGTTCGTGAAATGGA	0.403000													32	81					0	0	1	0	0
CLASP1	23332	broad.mit.edu	37	2	122154727	122154727	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:122154727C>T	uc002tnc.2	-	29	3502	c.3112G>A	c.(3112-3114)GAC>AAC	p.D1038N	CLASP1_uc010yyv.1_Missense_Mutation_p.D123N|CLASP1_uc002tmz.2_Missense_Mutation_p.D123N|CLASP1_uc002tna.2_Missense_Mutation_p.D123N|CLASP1_uc010yyw.1_RNA|CLASP1_uc002tnb.2_RNA|CLASP1_uc010yyx.1_RNA|CLASP1_uc010yyy.1_RNA|CLASP1_uc010yyz.1_Missense_Mutation_p.D1018N|CLASP1_uc010yza.1_Missense_Mutation_p.D1010N|CLASP1_uc010yzb.1_RNA|CLASP1_uc010yzc.1_RNA	NM_015282	NP_056097	Q7Z460	CLAP1_HUMAN	CLIP-associating protein 1 isoform 1	1038					axon guidance|cell division|establishment or maintenance of cell polarity|exit from mitosis|G2/M transition of mitotic cell cycle|microtubule anchoring|microtubule bundle formation|microtubule nucleation|microtubule organizing center organization|mitotic prometaphase|negative regulation of microtubule depolymerization	centrosomal corona|condensed chromosome kinetochore|cortical microtubule cytoskeleton|cytoplasmic microtubule|cytosol|Golgi apparatus|kinetochore microtubule	kinetochore binding|microtubule plus-end binding			ovary(1)|central_nervous_system(1)	2	Renal(3;0.0496)					TTTCTCACGTCTGAACTCTTT	0.423000													22	52					0	0	1	0	0
LOC440905	440905	broad.mit.edu	37	2	130792771	130792771	+	RNA	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:130792771A>T	uc002tpz.2	-	8		c.2558T>A				NR_026758				Homo sapiens cDNA FLJ43933 fis, clone TESTI4013685.												0						ATCACCTGGAATTGGAATTAA	0.468000													18	28					0	0	1	0	0
POTEE	445582	broad.mit.edu	37	2	132021825	132021825	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:132021825A>T	uc002tsn.2	+	15	2849	c.2797A>T	c.(2797-2799)AGC>TGC	p.S933C	PLEKHB2_uc002tsh.2_Intron|POTEE_uc002tsk.2_Missense_Mutation_p.S533C|POTEE_uc002tsl.2_Missense_Mutation_p.S515C|POTEE_uc010fmy.1_Missense_Mutation_p.S397C	NM_001083538	NP_001077007	Q6S8J3	POTEE_HUMAN	protein expressed in prostate, ovary, testis,	933	Actin-like.						ATP binding				0						GGCGGCCTCCAGCTCCTCCCT	0.617000													9	372					0	0	1	0	0
LOC401010	401010	broad.mit.edu	37	2	132201155	132201155	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:132201155G>A	uc002tst.2	-	1	1313	c.847C>T	c.(847-849)CAT>TAT	p.H283Y		NR_002826				SubName: Full=cDNA FLJ12694 fis, clone NT2RP1000358, highly similar to Homo sapiens mRNA; cDNA DKFZp564C186 (from clone DKFZp564C186);												0						ATGATGACATGGGCAAGGGAG	0.607000													6	10					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	137928438	137928438	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:137928438C>T	uc002tva.1	+	6	1560	c.1560C>T	c.(1558-1560)ATC>ATT	p.I520I	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Silent_p.I410I	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		CAGAAGGGATCTGTTTCCCTG	0.527000													24	49					0	0	1	0	0
THSD7B	80731	broad.mit.edu	37	2	138169367	138169367	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:138169367G>A	uc002tva.1	+	13	2791	c.2791G>A	c.(2791-2793)GGC>AGC	p.G931S	THSD7B_uc010zbj.1_Intron|THSD7B_uc002tvb.2_Missense_Mutation_p.G821S	NM_001080427	NP_001073896			thrombospondin, type I, domain containing 7B											ovary(4)|central_nervous_system(2)|pancreas(1)	7				BRCA - Breast invasive adenocarcinoma(221;0.19)		ATGTGGAGAAGGCCTGCGCTT	0.512000													30	75					0	0	1	0	0
LRP1B	53353	broad.mit.edu	37	2	141356300	141356300	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:141356300G>T	uc002tvj.1	-	43	8066	c.7094C>A	c.(7093-7095)CCA>CAA	p.P2365Q		NM_018557	NP_061027	Q9NZR2	LRP1B_HUMAN	low density lipoprotein-related protein 1B	2365	Extracellular (Potential).|LDL-receptor class B 25.				protein transport|receptor-mediated endocytosis	integral to membrane	calcium ion binding			lung(17)|skin(12)|ovary(12)|pancreas(3)|upper_aerodigestive_tract(2)|central_nervous_system(2)|liver(1)|kidney(1)	50		all_cancers(3;1.1e-60)|all_epithelial(3;1.94e-59)|all_lung(3;1.09e-24)|Lung NSC(3;5.65e-24)|Esophageal squamous(3;5.41e-13)|Renal(3;0.000147)|Breast(3;0.000527)|Hepatocellular(3;0.011)|all_neural(3;0.014)|Colorectal(150;0.101)		UCEC - Uterine corpus endometrioid carcinoma (2;0.00139)|Epithelial(1;1.25e-24)|all cancers(1;8.86e-24)|OV - Ovarian serous cystadenocarcinoma(1;2.45e-12)|LUSC - Lung squamous cell carcinoma(1;2.97e-10)|Lung(1;6.05e-09)|BRCA - Breast invasive adenocarcinoma(221;0.0103)		AAGTCCATTTGGAGTGAGTAT	0.423000										TSP Lung(27;0.18)			10	101					7.03913e-09	7.19629e-09	1	1	0
KYNU	8942	broad.mit.edu	37	2	143787204	143787204	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:143787204G>A	uc002tvl.2	+	11	1041	c.911G>A	c.(910-912)GGA>GAA	p.G304E	KYNU_uc010fnm.2_Missense_Mutation_p.G304E	NM_003937	NP_003928	Q16719	KYNU_HUMAN	kynureninase (L-kynurenine hydrolase) isoform a	304					anthranilate metabolic process|NAD biosynthetic process|quinolinate biosynthetic process|response to interferon-gamma|response to vitamin B6	cytosol|mitochondrion|soluble fraction	kynureninase activity|protein homodimerization activity			skin(2)	2				BRCA - Breast invasive adenocarcinoma(221;0.072)	L-Alanine(DB00160)|Pyridoxal Phosphate(DB00114)	AGATTAGTGGGATGGTTTGGC	0.214000													10	50					0	0	1	0	0
SCN1A	6323	broad.mit.edu	37	2	166894575	166894575	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:166894575G>A	uc010zcz.1	-	15	2642	c.2624C>T	c.(2623-2625)TCC>TTC	p.S875F	SCN1A_uc002udo.3_Missense_Mutation_p.S755F|SCN1A_uc010fpk.2_Missense_Mutation_p.S727F	NM_006920	NP_008851	P35498	SCN1A_HUMAN	sodium channel, voltage-gated, type I, alpha	886	II.					voltage-gated sodium channel complex	voltage-gated sodium channel activity			ovary(6)|skin(6)|large_intestine(1)	13					Lamotrigine(DB00555)|Levetiracetam(DB01202)|Phenacemide(DB01121)|Phenytoin(DB00252)|Topiramate(DB00273)|Zonisamide(DB00909)	AGCCCCCACGGAATTGCCGAT	0.408000													33	52					0	0	1	0	0
SCN7A	6332	broad.mit.edu	37	2	167334138	167334138	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:167334138C>T	uc002udu.1	-	2	196	c.69G>A	c.(67-69)CAG>CAA	p.Q23Q	SCN7A_uc002udv.1_Silent_p.Q23Q	NM_002976	NP_002967	Q01118	SCN7A_HUMAN	sodium channel, voltage-gated, type VII, alpha	23					muscle contraction	voltage-gated sodium channel complex	voltage-gated sodium channel activity			large_intestine(1)	1						TAGCAATATGCTGTTTTATAA	0.358000													3	11					0	0	1	0	0
XIRP2	129446	broad.mit.edu	37	2	168099418	168099418	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:168099418C>T	uc002udx.2	+	8	1534	c.1516C>T	c.(1516-1518)CAT>TAT	p.H506Y	XIRP2_uc010fpn.2_Intron|XIRP2_uc010fpo.2_Intron|XIRP2_uc010fpp.2_Intron|XIRP2_uc002udy.2_Missense_Mutation_p.H331Y|XIRP2_uc010fpq.2_Missense_Mutation_p.H284Y|XIRP2_uc010fpr.2_Intron	NM_152381	NP_689594	A4UGR9	XIRP2_HUMAN	xin actin-binding repeat containing 2 isoform 1	331					actin cytoskeleton organization	cell junction	actin binding			skin(7)|ovary(6)|pancreas(1)	14						TAAACACATCCATCCTGAGTT	0.368000													13	29					0	0	1	0	0
HOXD13	3239	broad.mit.edu	37	2	176958158	176958158	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:176958158C>T	uc002ukf.1	+	1	627	c.540C>T	c.(538-540)GCC>GCT	p.A180A		NM_000523	NP_000514	P35453	HXD13_HUMAN	homeobox D13	180					skeletal system development|transcription from RNA polymerase II promoter	nucleus	sequence-specific DNA binding			lung(1)	1			OV - Ovarian serous cystadenocarcinoma(117;0.0207)|Epithelial(96;0.18)	Colorectal(32;0.0526)|READ - Rectum adenocarcinoma(9;0.0678)		GCGTACCGGCCAACGAGGTGC	0.612000			T	NUP98	AML*								29	63					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179466788	179466788	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:179466788C>T	uc010zfg.1	-	233	47730	c.47506G>A	c.(47506-47508)GGA>AGA	p.G15836R	uc002umo.2_Intron|uc002ump.1_Intron|TTN_uc010zfh.1_Missense_Mutation_p.G9531R|TTN_uc010zfi.1_Missense_Mutation_p.G9464R|TTN_uc010zfj.1_Missense_Mutation_p.G9339R	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	16763							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			GTTGGGCGTCCCTTGATGACA	0.423000													45	102					0	0	1	0	0
TTN	7273	broad.mit.edu	37	2	179600532	179600532	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:179600532C>T	uc010zfg.1	-	47	11133	c.10909G>A	c.(10909-10911)GAG>AAG	p.E3637K	TTN_uc010zfh.1_Intron|TTN_uc010zfi.1_Intron|TTN_uc010zfj.1_Intron|TTN_uc002umz.1_Missense_Mutation_p.E298K	NM_133378	NP_596869	Q8WZ42	TITIN_HUMAN	titin isoform N2-A	4564							ATP binding|nucleic acid binding|protein serine/threonine kinase activity|protein tyrosine kinase activity			ovary(58)|stomach(19)|large_intestine(17)|lung(16)|skin(16)|breast(10)|pancreas(7)|kidney(4)|central_nervous_system(3)|urinary_tract(2)|upper_aerodigestive_tract(1)	153			OV - Ovarian serous cystadenocarcinoma(117;0.023)|Epithelial(96;0.0454)|all cancers(119;0.134)			ATGATCAACTCTGCTTGGCAG	0.393000													12	25					0	0	1	0	0
CCDC141	285025	broad.mit.edu	37	2	179701930	179701930	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:179701930T>G	uc002unf.1	-	13	2348	c.2291A>C	c.(2290-2292)CAG>CCG	p.Q764P	CCDC141_uc002une.1_Missense_Mutation_p.Q214P	NM_173648	NP_775919	Q6ZP82	CC141_HUMAN	coiled-coil domain containing 141	764							protein binding			ovary(7)|pancreas(2)|skin(1)	10			OV - Ovarian serous cystadenocarcinoma(117;0.0274)|Epithelial(96;0.0531)|all cancers(119;0.147)			CAAACCACCCTGAGCCTGAGG	0.478000													23	47					0	0	1	0	0
ZNF385B	151126	broad.mit.edu	37	2	180348074	180348074	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:180348074G>A	uc002unn.3	-	6	1199	c.595C>T	c.(595-597)CCT>TCT	p.P199S	ZNF385B_uc002unj.2_Missense_Mutation_p.P97S|ZNF385B_uc002unk.2_RNA|ZNF385B_uc002unl.2_Missense_Mutation_p.P96S|ZNF385B_uc002unm.2_Missense_Mutation_p.P123S	NM_152520	NP_689733	Q569K4	Z385B_HUMAN	zinc finger protein 385B isoform 1	199						nucleus	nucleic acid binding|zinc ion binding			ovary(1)	1			Epithelial(96;0.174)|OV - Ovarian serous cystadenocarcinoma(117;0.201)			TCCTTGGAAGGAACCATTTTG	0.458000													11	78					0	0	1	0	0
ZNF804A	91752	broad.mit.edu	37	2	185802491	185802491	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:185802491C>T	uc002uph.2	+	4	2962	c.2368C>T	c.(2368-2370)CAT>TAT	p.H790Y		NM_194250	NP_919226	Q7Z570	Z804A_HUMAN	zinc finger protein 804A	790						intracellular	zinc ion binding			ovary(6)|skin(3)|large_intestine(1)|pancreas(1)	11						TCGACAGAATCATTTACCAGA	0.388000													26	31					0	0	1	0	0
COL3A1	1281	broad.mit.edu	37	2	189861890	189861890	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:189861890G>A	uc002uqj.1	+	25	1879	c.1762_splice	c.e25-1	p.G588_splice		NM_000090	NP_000081	P02461	CO3A1_HUMAN	collagen type III alpha 1 preproprotein						axon guidance|cell-matrix adhesion|collagen biosynthetic process|collagen fibril organization|fibril organization|heart development|integrin-mediated signaling pathway|negative regulation of immune response|peptide cross-linking|platelet activation|response to cytokine stimulus|response to radiation|skin development|transforming growth factor beta receptor signaling pathway	collagen type III|extracellular space	extracellular matrix structural constituent|integrin binding|platelet-derived growth factor binding			central_nervous_system(7)|ovary(4)|large_intestine(2)	13			OV - Ovarian serous cystadenocarcinoma(117;0.0106)|Epithelial(96;0.141)		Collagenase(DB00048)|Palifermin(DB00039)	TTCTTCTTTAGGGTGCTCCTG	0.363000													21	89					0	0	1	0	0
STAT4	6775	broad.mit.edu	37	2	191898243	191898243	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:191898243A>G	uc002usm.1	-	20	2079	c.1825T>C	c.(1825-1827)TTC>CTC	p.F609L	STAT4_uc002usn.1_Missense_Mutation_p.F609L|STAT4_uc010zgk.1_Missense_Mutation_p.F454L|STAT4_uc002uso.2_Missense_Mutation_p.F609L	NM_003151	NP_003142	Q14765	STAT4_HUMAN	signal transducer and activator of transcription	609	SH2.				JAK-STAT cascade	cytoplasm|nucleus	calcium ion binding|protein binding|sequence-specific DNA binding transcription factor activity|signal transducer activity			breast(3)|skin(2)|lung(1)|ovary(1)|prostate(1)|pancreas(1)	9			OV - Ovarian serous cystadenocarcinoma(117;0.00854)|Epithelial(96;0.0864)|all cancers(119;0.204)			ACCCAGGTGAAAGTTATTCCT	0.378000													18	39					0	0	1	0	0
SGOL2	151246	broad.mit.edu	37	2	201438229	201438229	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:201438229A>G	uc002uvw.2	+	7	3273	c.3160A>G	c.(3160-3162)AAA>GAA	p.K1054E	SGOL2_uc010zhd.1_Missense_Mutation_p.K1054E|SGOL2_uc010zhe.1_Missense_Mutation_p.K1054E	NM_152524	NP_689737	Q562F6	SGOL2_HUMAN	shugoshin-like 2 isoform 1	1054					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol|mitotic cohesin complex	protein binding			ovary(2)|skin(2)	4						TTTGAATAAAAAAGATCTCCC	0.343000													20	74					0	0	1	0	0
ALS2CR4	65062	broad.mit.edu	37	2	202494062	202494062	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:202494062G>A	uc002uyh.1	-	10	861	c.760C>T	c.(760-762)CAG>TAG	p.Q254*	ALS2CR4_uc002uyg.1_Nonsense_Mutation_p.Q246*|ALS2CR4_uc010zho.1_Nonsense_Mutation_p.Q49*|ALS2CR4_uc010zhp.1_RNA	NM_001044385	NP_001037850	Q96Q45	TM237_HUMAN	amyotrophic lateral sclerosis 2 (juvenile)	278						integral to membrane	protein binding				0						TTGGATAGCTGATCTCCTGCT	0.428000													7	15					0	0	1	0	0
ZDBF2	57683	broad.mit.edu	37	2	207171031	207171031	+	Silent	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:207171031T>A	uc002vbp.2	+	5	2029	c.1779T>A	c.(1777-1779)GTT>GTA	p.V593V		NM_020923	NP_065974	Q9HCK1	ZDBF2_HUMAN	zinc finger, DBF-type containing 2	593							nucleic acid binding|zinc ion binding			ovary(3)	3						AGTCAGTAGTTGATCATCCCC	0.408000													17	41					0	0	1	0	0
FN1	2335	broad.mit.edu	37	2	216251549	216251550	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:216251549_216251550GG>AA	uc002vfa.2	-	28	4740_4741	c.4474_4475CC>TT	c.(4474-4476)CCT>TTT	p.P1492F	FN1_uc002vfb.2_Missense_Mutation_p.P1401F|FN1_uc002vfc.2_Missense_Mutation_p.P1401F|FN1_uc002vfd.2_Missense_Mutation_p.P1492F|FN1_uc002vfe.2_Missense_Mutation_p.P1401F|FN1_uc002vff.2_Missense_Mutation_p.P1401F|FN1_uc002vfg.2_Missense_Mutation_p.P1401F|FN1_uc002vfh.2_Missense_Mutation_p.P1401F|FN1_uc002vfi.2_Missense_Mutation_p.P1492F|FN1_uc002vfj.2_Missense_Mutation_p.P1492F|FN1_uc002vez.2_5'UTR|FN1_uc010zjp.1_Missense_Mutation_p.P119F	NM_212482	NP_997647	P02751	FINC_HUMAN	fibronectin 1 isoform 1 preproprotein	Error:AA_residue_mismatch_between_GAF_and_UniProt_prot_seqs_after_alignment					acute-phase response|angiogenesis|leukocyte migration|peptide cross-linking|platelet activation|platelet degranulation|regulation of cell shape|substrate adhesion-dependent cell spreading	ER-Golgi intermediate compartment|fibrinogen complex|platelet alpha granule lumen|proteinaceous extracellular matrix	collagen binding|extracellular matrix structural constituent|heparin binding			central_nervous_system(7)|large_intestine(2)|breast(2)|ovary(1)|pancreas(1)	13		Renal(323;0.127)		Epithelial(149;9.59e-07)|all cancers(144;0.000174)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00948)	Alteplase(DB00009)|Anistreplase(DB00029)|Reteplase(DB00015)|Tenecteplase(DB00031)	ATCTTCTCGAGGTCTCCCACTG	0.535000													27	48					0	0	1	0	0
SLC4A3	6508	broad.mit.edu	37	2	220505584	220505584	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:220505584C>T	uc002vmp.3	+	22	3790	c.3521C>T	c.(3520-3522)TCC>TTC	p.S1174F	SLC4A3_uc002vmo.3_Missense_Mutation_p.S1201F|SLC4A3_uc010fwm.2_Missense_Mutation_p.S724F	NM_005070	NP_005061	P48751	B3A3_HUMAN	solute carrier family 4, anion exchanger, member	1174	Membrane (anion exchange).|Helical; (Potential).				bicarbonate transport	integral to plasma membrane|membrane fraction	inorganic anion exchanger activity			ovary(2)|upper_aerodigestive_tract(1)|breast(1)|skin(1)	5		Renal(207;0.0183)		Epithelial(149;2.53e-07)|all cancers(144;5.57e-05)|LUSC - Lung squamous cell carcinoma(224;0.008)|Lung(261;0.00942)		GTGGTCAAGTCCACGGCGGCC	0.647000													24	72					0	0	1	0	0
DOCK10	55619	broad.mit.edu	37	2	225639827	225639827	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:225639827G>A	uc010fwz.1	-	52	6047	c.5808C>T	c.(5806-5808)AAC>AAT	p.N1936N	DOCK10_uc002vob.2_Silent_p.N1930N|DOCK10_uc002voa.2_Silent_p.N592N	NM_014689	NP_055504	Q96BY6	DOC10_HUMAN	dedicator of cytokinesis 10	1936	DHR-2.						GTP binding			ovary(2)	2		Renal(207;0.0113)|all_lung(227;0.0486)|Lung NSC(271;0.0653)|all_hematologic(139;0.14)		Epithelial(121;2.37e-10)|all cancers(144;2.26e-07)|Lung(261;0.0143)|LUSC - Lung squamous cell carcinoma(224;0.0178)		AATCCTTGGGGTTTACCTGTG	0.507000													13	30					0	0	1	0	0
COL4A4	1286	broad.mit.edu	37	2	227958860	227958860	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:227958860C>T	uc010zlt.1	-	20	2004	c.1350G>A	c.(1348-1350)CAG>CAA	p.Q450Q		NM_000092	NP_000083	P53420	CO4A4_HUMAN	alpha 4 type IV collagen precursor	450	Triple-helical region.				axon guidance|glomerular basement membrane development	basal lamina|collagen type IV	extracellular matrix structural constituent|protein binding			ovary(5)|central_nervous_system(3)|pancreas(1)|breast(1)|skin(1)	11		Renal(207;0.00844)|all_lung(227;0.0187)|Lung NSC(271;0.0879)|all_hematologic(139;0.21)|Esophageal squamous(248;0.242)		Epithelial(121;6.7e-11)|all cancers(144;5.39e-08)|Lung(261;0.0132)|LUSC - Lung squamous cell carcinoma(224;0.0181)		CTGGGAGGCCCTGCAGGCCTG	0.488000													12	76					0	0	1	0	0
GIGYF2	26058	broad.mit.edu	37	2	233612407	233612407	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:233612407C>T	uc002vti.3	+	6	461	c.124C>T	c.(124-126)CGT>TGT	p.R42C	GIGYF2_uc010zmj.1_Missense_Mutation_p.R42C|GIGYF2_uc002vtg.2_Missense_Mutation_p.R42C|GIGYF2_uc002vtj.3_Missense_Mutation_p.R42C|GIGYF2_uc002vtk.3_Missense_Mutation_p.R42C|GIGYF2_uc002vth.3_Missense_Mutation_p.R42C|GIGYF2_uc010zmk.1_RNA	NM_015575	NP_056390	Q6Y7W6	PERQ2_HUMAN	GRB10 interacting GYF protein 2 isoform b	42					cell death		protein binding			ovary(4)|central_nervous_system(3)	7		Breast(86;0.00279)|all_hematologic(139;0.00793)|Renal(207;0.0112)|Acute lymphoblastic leukemia(138;0.0182)|all_lung(227;0.0271)|Lung NSC(271;0.0839)		Epithelial(121;7.37e-16)|BRCA - Breast invasive adenocarcinoma(100;0.000472)|LUSC - Lung squamous cell carcinoma(224;0.00902)|Lung(119;0.0118)|GBM - Glioblastoma multiforme(43;0.0145)		AGCAGATTATCGTTACGGCAG	0.398000													47	82					0	0	1	0	0
TRPM8	79054	broad.mit.edu	37	2	234846122	234846122	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:234846122T>A	uc002vvh.2	+	4	357	c.317T>A	c.(316-318)ATT>AAT	p.I106N	TRPM8_uc010fyj.2_5'UTR|TRPM8_uc002vvi.3_Missense_Mutation_p.I56N|TRPM8_uc002vvj.3_Missense_Mutation_p.I29N	NM_024080	NP_076985	Q7Z2W7	TRPM8_HUMAN	transient receptor potential cation channel,	106	Cytoplasmic (Potential).					integral to membrane				skin(4)	4		Breast(86;0.00205)|Renal(207;0.00694)|all_lung(227;0.0129)|Lung NSC(271;0.0408)|all_hematologic(139;0.0753)|Acute lymphoblastic leukemia(138;0.224)		Epithelial(121;1.19e-17)|BRCA - Breast invasive adenocarcinoma(100;0.000139)|Lung(119;0.00758)|LUSC - Lung squamous cell carcinoma(224;0.0108)	Menthol(DB00825)	TTTGGGGATATTCAGTTTGAG	0.468000													47	197					0	0	1	0	0
NSFL1C	55968	broad.mit.edu	37	20	1447409	1447410	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:1447409_1447410CC>TT	uc002wfc.2	-	1	1008_1009	c.60_61GG>AA	c.(58-63)GAGGAC>GAAAAC	p.D21N	NSFL1C_uc002wfd.2_5'UTR|NSFL1C_uc002wfe.2_Missense_Mutation_p.D21N|NSFL1C_uc002wff.2_RNA	NM_016143	NP_057227	Q9UNZ2	NSF1C_HUMAN	p47 protein isoform a	21						chromosome|Golgi stack|nucleus	lipid binding|protein binding				0						CGGGCCCGGTCCTCCTCGGCGC	0.757000													5	6					0	0	1	0	0
SIRPD	128646	broad.mit.edu	37	20	1517897	1517897	+	Missense_Mutation	SNP	G	C	C	rs151165529		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:1517897G>C	uc002wfi.2	-	3	525	c.481C>G	c.(481-483)CAT>GAT	p.H161D		NM_178460	NP_848555	Q9H106	SIRPD_HUMAN	signal-regulatory protein delta precursor	161						extracellular region				ovary(1)|kidney(1)|skin(1)	3						TGGGCATCATGGTGGGCCCTG	0.557000													32	161					0	0	1	0	0
CHGB	1114	broad.mit.edu	37	20	5903562	5903562	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:5903562C>T	uc002wmg.2	+	4	1078	c.772C>T	c.(772-774)CGA>TGA	p.R258*	CHGB_uc010zqz.1_5'UTR	NM_001819	NP_001810	P05060	SCG1_HUMAN	chromogranin B precursor	258						extracellular region	hormone activity	p.R258Q(3)		breast(3)|skin(2)|ovary(1)	6						AGGCCAACCCCGAAGCCAGGA	0.587000													7	14					0	0	1	0	0
PLCB4	5332	broad.mit.edu	37	20	9404487	9404487	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:9404487C>T	uc002wnf.2	+	26	2512	c.2376C>T	c.(2374-2376)CTC>CTT	p.L792L	PLCB4_uc010gbw.1_Silent_p.L792L|PLCB4_uc010gbx.2_Silent_p.L804L|PLCB4_uc002wne.2_Silent_p.L792L|PLCB4_uc002wnh.2_Silent_p.L639L	NM_182797	NP_877949	Q15147	PLCB4_HUMAN	phospholipase C beta 4 isoform b	792					intracellular signal transduction|lipid catabolic process	cytosol	calcium ion binding|phosphatidylinositol phospholipase C activity|protein binding|signal transducer activity			skin(11)|ovary(3)|pancreas(1)	15						TTGATGGCCTCCAAGCCGGAT	0.448000													18	33					0	0	1	0	0
C20orf7	79133	broad.mit.edu	37	20	13779129	13779129	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:13779129C>T	uc002wom.2	+	6	535	c.502C>T	c.(502-504)CCT>TCT	p.P168S	C20orf7_uc002wol.1_Missense_Mutation_p.P168S|C20orf7_uc002won.2_Missense_Mutation_p.P140S|C20orf7_uc002woo.2_RNA	NM_024120	NP_077025	Q5TEU4	CT007_HUMAN	hypothetical protein LOC79133 isoform 1	168					mitochondrial respiratory chain complex I assembly	extrinsic to mitochondrial inner membrane	methyltransferase activity				0		Myeloproliferative disorder(85;0.00878)				GAATGACCTTCCTAGAGCACT	0.299000													19	65					0	0	1	0	0
BFSP1	631	broad.mit.edu	37	20	17475274	17475274	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:17475274G>A	uc002wpo.2	-	8	1482	c.1443C>T	c.(1441-1443)GAC>GAT	p.D481D	BFSP1_uc002wpp.2_Silent_p.D356D|BFSP1_uc010zrn.1_Silent_p.D342D|BFSP1_uc010zro.1_Silent_p.D342D	NM_001195	NP_001186	Q12934	BFSP1_HUMAN	filensin isoform 1	481	Tail.					cytoplasm|intermediate filament|membrane	structural constituent of cytoskeleton|structural constituent of eye lens			central_nervous_system(1)	1						AGAATCTAGGGTCCACGTAAT	0.552000													20	46					0	0	1	0	0
NINL	22981	broad.mit.edu	37	20	25459648	25459649	+	Missense_Mutation	DNP	GG	AA	AA	rs146085894		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:25459648_25459649GG>AA	uc002wux.1	-	16	2185_2186	c.2111_2112CC>TT	c.(2110-2112)CCC>CTT	p.P704L	NINL_uc010gdn.1_Missense_Mutation_p.P704L|NINL_uc010gdo.1_Missense_Mutation_p.P487L	NM_025176	NP_079452	Q9Y2I6	NINL_HUMAN	ninein-like	704					G2/M transition of mitotic cell cycle	cytosol|microtubule|microtubule organizing center	calcium ion binding			ovary(2)|pancreas(1)|central_nervous_system(1)|skin(1)	5						GCTCAGGCTCGGGGCCGCGGGC	0.678000													24	55					0	0	1	0	0
TPX2	22974	broad.mit.edu	37	20	30381757	30381757	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:30381757C>T	uc002wwp.1	+	14	2314	c.1616C>T	c.(1615-1617)TCG>TTG	p.S539L	TPX2_uc010gdv.1_Missense_Mutation_p.S575L	NM_012112	NP_036244	Q9ULW0	TPX2_HUMAN	TPX2, microtubule-associated protein homolog	539					activation of protein kinase activity|apoptosis|cell division|cell proliferation|mitosis|regulation of mitotic spindle organization	cytoplasm|microtubule|nucleus|spindle pole	ATP binding|GTP binding|protein kinase binding			large_intestine(1)|ovary(1)	2			Epithelial(4;0.000771)|Colorectal(19;0.00306)|all cancers(5;0.004)|COAD - Colon adenocarcinoma(19;0.0347)|OV - Ovarian serous cystadenocarcinoma(3;0.0656)			TGCCCTTTCTCGTTTGATTCT	0.443000													63	105					0	0	1	0	0
C20orf186	149954	broad.mit.edu	37	20	31680452	31680452	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:31680452C>T	uc010zue.1	+	9	1347	c.1332C>T	c.(1330-1332)ATC>ATT	p.I444I		NM_182519	NP_872325	P59827	LPLC4_HUMAN	antimicrobial peptide RY2G5 precursor	444						cytoplasm|extracellular region	lipid binding				0						ACCTGGATATCACCAATGGCA	0.577000													55	104					0	0	1	0	0
NCOA6	23054	broad.mit.edu	37	20	33324517	33324517	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:33324517A>G	uc002xav.2	-	13	8510	c.5939T>C	c.(5938-5940)CTG>CCG	p.L1980P	NCOA6_uc002xaw.2_Missense_Mutation_p.L1980P	NM_014071	NP_054790	Q14686	NCOA6_HUMAN	nuclear receptor coactivator 6	1980	EP300/CRSP3-binding region.				brain development|cellular lipid metabolic process|DNA recombination|DNA repair|DNA replication|estrogen receptor signaling pathway|glucocorticoid receptor signaling pathway|heart development|myeloid cell differentiation|positive regulation of transcription from RNA polymerase II promoter|response to hormone stimulus|transcription initiation from RNA polymerase II promoter	transcription factor complex	chromatin binding|enzyme binding|estrogen receptor binding|ligand-dependent nuclear receptor transcription coactivator activity|retinoid X receptor binding|thyroid hormone receptor binding			ovary(3)|breast(3)|central_nervous_system(1)	7						AGAGGCCTGCAGTGCTGTGGT	0.433000													17	47					0	0	1	0	0
EPB41L1	2036	broad.mit.edu	37	20	34778703	34778703	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:34778703C>T	uc002xfb.2	+	11	1455	c.1284C>T	c.(1282-1284)TCC>TCT	p.S428S	EPB41L1_uc002xeu.2_Silent_p.S366S|EPB41L1_uc010zvo.1_Silent_p.S428S|EPB41L1_uc002xev.2_Silent_p.S428S|EPB41L1_uc002xew.2_Silent_p.S331S|EPB41L1_uc002xex.2_Silent_p.S397S|EPB41L1_uc002xey.2_Silent_p.S355S|EPB41L1_uc002xez.2_Silent_p.S366S	NM_012156	NP_036288	Q9H4G0	E41L1_HUMAN	erythrocyte membrane protein band 4.1-like 1	428					cortical actin cytoskeleton organization|synaptic transmission	cytoskeleton|cytosol|extrinsic to membrane|plasma membrane	actin binding|structural molecule activity			ovary(2)|pancreas(1)	3	Breast(12;0.0239)					ACACCATGTCCCGCAGCCTTG	0.607000													30	60					0	0	1	0	0
DSN1	79980	broad.mit.edu	37	20	35399430	35399430	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:35399430G>A	uc010gfr.2	-	3	574	c.201C>T	c.(199-201)CTC>CTT	p.L67L	DSN1_uc002xfz.2_Silent_p.L67L|DSN1_uc002xfy.3_Intron|DSN1_uc002xga.2_Silent_p.L67L|DSN1_uc010zvs.1_Intron|DSN1_uc002xgc.2_Silent_p.L51L|DSN1_uc002xgb.2_Silent_p.L51L	NM_001145316	NP_001138788	Q9H410	DSN1_HUMAN	DSN1, MIND kinetochore complex component,	67					cell division|chromosome segregation|mitotic prometaphase	cytosol|MIS12/MIND type complex|nucleus	protein binding			ovary(2)	2		Myeloproliferative disorder(115;0.00874)				CCTGGTGGCTGAGATCACAAT	0.473000													36	101					0	0	1	0	0
CTNNBL1	56259	broad.mit.edu	37	20	36500337	36500337	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:36500337G>A	uc010zvw.1	+	17	1705	c.1614G>A	c.(1612-1614)GAG>GAA	p.E538E	CTNNBL1_uc002xhh.2_Silent_p.E351E|CTNNBL1_uc002xhi.2_RNA|CTNNBL1_uc002xhj.2_Silent_p.E286E	NM_030877	NP_110517	Q8WYA6	CTBL1_HUMAN	beta catenin-like 1	538					apoptosis|positive regulation of apoptosis|somatic diversification of immunoglobulins	nucleus	enzyme binding			ovary(2)	2		Myeloproliferative disorder(115;0.00878)				AGTATGCAGAGAACATCGGGG	0.597000													38	70					0	0	1	0	0
SEMG1	6406	broad.mit.edu	37	20	43836232	43836232	+	Silent	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:43836232A>G	uc002xni.2	+	2	351	c.294A>G	c.(292-294)CGA>CGG	p.R98R	SEMG1_uc002xnj.2_Silent_p.R98R|SEMG2_uc010ggz.2_Intron|SEMG1_uc002xnh.2_Silent_p.R98R	NM_003007	NP_002998	P04279	SEMG1_HUMAN	semenogelin I preproprotein	98					insemination|sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(2)	2		Myeloproliferative disorder(115;0.0122)				AATCACAACGACATCTAGGTG	0.378000													66	95					0	0	1	0	0
SEMG2	6407	broad.mit.edu	37	20	43851264	43851264	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:43851264A>G	uc010ggz.2	+	2	1048	c.991A>G	c.(991-993)ACA>GCA	p.T331A	SEMG2_uc002xnk.2_Missense_Mutation_p.T331A|SEMG2_uc002xnl.2_Missense_Mutation_p.T331A	NM_003008	NP_002999	Q02383	SEMG2_HUMAN	semenogelin II precursor	331	Repeat-rich region.|4 X 60 AA tandem repeats, type I.				sexual reproduction	extracellular space|stored secretory granule	structural molecule activity			skin(1)	1		Myeloproliferative disorder(115;0.0122)				AAACCAGGTAACAATTCATAG	0.373000													51	76					0	0	1	0	0
SLC12A5	57468	broad.mit.edu	37	20	44673700	44673700	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:44673700G>A	uc010zxl.1	+	12	1635	c.1559G>A	c.(1558-1560)GGG>GAG	p.G520E	SLC12A5_uc010zxm.1_Intron|SLC12A5_uc002xrb.2_Missense_Mutation_p.G497E	NM_001134771	NP_001128243	Q9H2X9	S12A5_HUMAN	solute carrier family 12 (potassium-chloride	520					potassium ion transport|sodium ion transport	integral to membrane	potassium:chloride symporter activity			ovary(2)|large_intestine(1)|central_nervous_system(1)|skin(1)	5		Myeloproliferative disorder(115;0.0122)			Bumetanide(DB00887)|Potassium Chloride(DB00761)	TCCACCTGTGGGGCTGGGCTG	0.612000													81	167					0	0	1	0	0
SLC2A10	81031	broad.mit.edu	37	20	45353769	45353769	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:45353769G>A	uc002xsl.2	+	2	191	c.94G>A	c.(94-96)GCC>ACC	p.A32T		NM_030777	NP_110404	O95528	GTR10_HUMAN	solute carrier family 2 member 10	32	Helical; Name=1; (Potential).					endomembrane system|integral to membrane|perinuclear region of cytoplasm|plasma membrane	D-glucose transmembrane transporter activity|sugar:hydrogen symporter activity			ovary(1)	1		Myeloproliferative disorder(115;0.0122)				CATATCAGGTGCCCTGCTGCC	0.582000													53	136					0	0	1	0	0
EYA2	2139	broad.mit.edu	37	20	45725795	45725795	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:45725795C>T	uc002xsm.2	+	9	1250	c.876C>T	c.(874-876)TCC>TCT	p.S292S	EYA2_uc010ghp.2_Silent_p.S292S|EYA2_uc002xsn.2_Silent_p.S297S|EYA2_uc002xso.2_Silent_p.S292S|EYA2_uc002xsp.2_Silent_p.S292S|EYA2_uc002xsq.2_Silent_p.S292S	NM_005244	NP_005235	O00167	EYA2_HUMAN	eyes absent 2 isoform a	292					DNA repair|histone dephosphorylation|mesodermal cell fate specification|regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	magnesium ion binding|protein binding|protein tyrosine phosphatase activity			ovary(1)	1		Myeloproliferative disorder(115;0.0241)				CATTTGCATCCAGATACGGGA	0.423000													99	215					0	0	1	0	0
ZNFX1	57169	broad.mit.edu	37	20	47887960	47887960	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:47887960G>A	uc002xui.2	-	3	636	c.389C>T	c.(388-390)CCC>CTC	p.P130L		NM_021035	NP_066363	Q9P2E3	ZNFX1_HUMAN	zinc finger, NFX1-type containing 1	130							metal ion binding			ovary(2)	2			BRCA - Breast invasive adenocarcinoma(12;0.00173)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			CTTCTGGTGGGGAGTCCGCCA	0.527000													90	240					0	0	1	0	0
KCNB1	3745	broad.mit.edu	37	20	48098963	48098963	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:48098963C>G	uc002xur.1	-	1	219	c.55G>C	c.(55-57)GAG>CAG	p.E19Q	KCNB1_uc002xus.1_Missense_Mutation_p.E19Q	NM_004975	NP_004966	Q14721	KCNB1_HUMAN	potassium voltage-gated channel, Shab-related	19	Cytoplasmic (Potential).				energy reserve metabolic process|regulation of insulin secretion	voltage-gated potassium channel complex	protein binding|voltage-gated potassium channel activity			pancreas(1)|skin(1)	2			BRCA - Breast invasive adenocarcinoma(12;0.000405)|COAD - Colon adenocarcinoma(4;0.14)|Colorectal(8;0.166)			TCCATGGGCTCGGGCGGCAGC	0.602000													4	7					0	0	1	0	0
PHACTR3	116154	broad.mit.edu	37	20	58348419	58348419	+	Silent	SNP	G	A	A	rs146810775		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:58348419G>A	uc002yau.2	+	6	1304	c.837G>A	c.(835-837)CCG>CCA	p.P279P	PHACTR3_uc002yat.2_Silent_p.P276P|PHACTR3_uc010zzw.1_Silent_p.P238P|PHACTR3_uc002yav.2_Silent_p.P238P|PHACTR3_uc002yaw.2_Silent_p.P238P|PHACTR3_uc002yax.2_Silent_p.P168P	NM_080672	NP_542403	Q96KR7	PHAR3_HUMAN	phosphatase and actin regulator 3 isoform 1	279						nuclear matrix	actin binding|protein phosphatase inhibitor activity			ovary(2)|pancreas(1)	3	all_lung(29;0.00344)		BRCA - Breast invasive adenocarcinoma(7;2.76e-09)			CGGGGTCTCCGCATCTCACCA	0.677000													23	102					0	0	1	0	0
CDH4	1002	broad.mit.edu	37	20	60485496	60485496	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:60485496G>A	uc002ybn.1	+	9	1221	c.1207G>A	c.(1207-1209)GAA>AAA	p.E403K	CDH4_uc002ybp.1_Missense_Mutation_p.E329K	NM_001794	NP_001785	P55283	CADH4_HUMAN	cadherin 4, type 1 preproprotein	403	Cadherin 3.|Extracellular (Potential).				adherens junction organization|cell junction assembly		calcium ion binding			lung(3)|ovary(2)|skin(1)	6			BRCA - Breast invasive adenocarcinoma(19;2.36e-08)			GGAGGTCCCCGAAAACCGCGT	0.428000													32	67					0	0	1	0	0
DIDO1	11083	broad.mit.edu	37	20	61510970	61510970	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:61510970C>T	uc002ydr.1	-	16	6602	c.6338G>A	c.(6337-6339)AGG>AAG	p.R2113K	DIDO1_uc002yds.1_Missense_Mutation_p.R2113K	NM_033081	NP_149072	Q9BTC0	DIDO1_HUMAN	death inducer-obliterator 1 isoform c	2113	Arg-rich.				apoptosis|transcription, DNA-dependent	cytoplasm|nucleus	zinc ion binding			ovary(3)|skin(3)	6	Breast(26;5.68e-08)					CTCTCTCCTCCTGTCCTCGGA	0.403000													90	101					0	0	1	0	0
TPTE	7179	broad.mit.edu	37	21	10916422	10916422	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:10916422G>A	uc002yip.1	-	20	1592	c.1224C>T	c.(1222-1224)CTC>CTT	p.L408L	TPTE_uc002yis.1_Intron|TPTE_uc002yiq.1_Silent_p.L390L|TPTE_uc002yir.1_Silent_p.L370L|TPTE_uc010gkv.1_Silent_p.L270L	NM_199261	NP_954870	P56180	TPTE_HUMAN	transmembrane phosphatase with tensin homology	408					signal transduction	integral to membrane	ion channel activity|protein tyrosine phosphatase activity|protein tyrosine/serine/threonine phosphatase activity			ovary(2)|lung(1)|breast(1)|skin(1)	5			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTCTTGGAGGGAGATTCCAGT	0.363000													6	115					0	0	1	0	0
BAGE2	85319	broad.mit.edu	37	21	11058275	11058275	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:11058275C>T	uc002yit.1	-	3	373	c.165G>A	c.(163-165)AAG>AAA	p.K55K	BAGE_uc002yiw.1_RNA	NM_182482	NP_872288			B melanoma antigen family, member 2 precursor												0			Colorectal(6;3.44e-05)|COAD - Colon adenocarcinoma(6;0.00727)|READ - Rectum adenocarcinoma(6;0.0723)	UCEC - Uterine corpus endometrioid carcinoma (6;0.0974)|all cancers(6;2.54e-22)|Epithelial(6;4.21e-19)|OV - Ovarian serous cystadenocarcinoma(6;1.16e-09)|BRCA - Breast invasive adenocarcinoma(6;7.72e-05)|Lung(8;0.000189)|LUSC - Lung squamous cell carcinoma(6;0.00379)|GBM - Glioblastoma multiforme(6;0.00391)|Kidney(17;0.0773)|LUAD - Lung adenocarcinoma(8;0.247)		GTACATTTCTCTTCACAGCAT	0.413000													5	257					0	0	1	0	0
APP	351	broad.mit.edu	37	21	27284167	27284167	+	Missense_Mutation	SNP	C	T	T	rs140304729		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:27284167C>T	uc002ylz.2	-	14	1995	c.1795G>A	c.(1795-1797)GAA>AAA	p.E599K	APP_uc011acg.1_Missense_Mutation_p.E107K|APP_uc010glk.2_Missense_Mutation_p.E575K|APP_uc002yma.2_Missense_Mutation_p.E580K|APP_uc011ach.1_Missense_Mutation_p.E543K|APP_uc002ymb.2_Missense_Mutation_p.E524K|APP_uc010glj.2_Missense_Mutation_p.E468K|APP_uc011aci.1_Missense_Mutation_p.E489K	NM_000484	NP_000475	P05067	A4_HUMAN	amyloid beta A4 protein isoform a precursor	599	Extracellular (Potential).				adult locomotory behavior|axon cargo transport|axon midline choice point recognition|cell adhesion|cellular copper ion homeostasis|collateral sprouting in absence of injury|dendrite development|endocytosis|extracellular matrix organization|G2 phase of mitotic cell cycle|innate immune response|ionotropic glutamate receptor signaling pathway|mating behavior|mRNA polyadenylation|neuron apoptosis|neuron remodeling|Notch signaling pathway|platelet activation|platelet degranulation|positive regulation of mitotic cell cycle|protein phosphorylation|regulation of epidermal growth factor receptor activity|regulation of multicellular organism growth|regulation of synapse structure and activity|regulation of translation|visual learning	axon|cell surface|coated pit|dendritic shaft|dendritic spine|extracellular region|Golgi apparatus|integral to plasma membrane|platelet alpha granule lumen	acetylcholine receptor binding|DNA binding|heparin binding|identical protein binding|metal ion binding|protein binding|protein binding|PTB domain binding|serine-type endopeptidase inhibitor activity			ovary(1)	1		Breast(209;0.00295)				GTTTTCGTTTCGGTCAAAGAT	0.502000													22	52					0	0	1	0	0
KRTAP19-6	337973	broad.mit.edu	37	21	31914061	31914061	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:31914061C>T	uc002yok.1	-	1	121	c.92G>A	c.(91-93)AGA>AAA	p.R31K		NM_181612	NP_853643	Q3LI70	KR196_HUMAN	keratin associated protein 19-6	31						intermediate filament					0						AGAGCCATATCTGTAGCCTCC	0.512000													87	153					0	0	1	0	0
DOPEY2	9980	broad.mit.edu	37	21	37597944	37597945	+	Silent	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:37597944_37597945CC>TT	uc002yvg.2	+	12	1531_1532	c.1452_1453CC>TT	c.(1450-1455)TTCCTG>TTTTTG	p.484_485FL>FL	DOPEY2_uc011aeb.1_Silent_p.484_485FL>FL	NM_005128	NP_005119	Q9Y3R5	DOP2_HUMAN	pad-1-like	484_485					endoplasmic reticulum organization|Golgi to endosome transport|multicellular organismal development|protein transport	Golgi membrane				ovary(1)|central_nervous_system(1)	2						TCCTGGTCTTCCTGCTGGATGT	0.530000													18	71					0	0	1	0	0
TTC3	7267	broad.mit.edu	37	21	38507810	38507810	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:38507810T>A	uc002yvz.2	+	18	1679	c.1574T>A	c.(1573-1575)ATA>AAA	p.I525K	TTC3_uc011aee.1_Missense_Mutation_p.I215K|TTC3_uc002ywa.2_Missense_Mutation_p.I525K|TTC3_uc002ywb.2_Missense_Mutation_p.I525K|TTC3_uc010gnf.2_Missense_Mutation_p.I290K|TTC3_uc002ywc.2_Missense_Mutation_p.I215K|TTC3_uc011aed.1_Missense_Mutation_p.I215K|TTC3_uc010gne.1_Missense_Mutation_p.I525K	NM_001001894	NP_001001894	P53804	TTC3_HUMAN	tetratricopeptide repeat domain 3	525					protein K48-linked ubiquitination|ubiquitin-dependent protein catabolic process	nucleus	protein binding|ubiquitin-protein ligase activity|zinc ion binding			skin(3)|ovary(2)|lung(2)|breast(2)	9		Myeloproliferative disorder(46;0.0412)				CCTCAAAAAATAAAGGTAAAT	0.413000													4	25					0	0	1	0	0
SH3BGR	6450	broad.mit.edu	37	21	40834459	40834459	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:40834459G>A	uc002yya.2	+	2	447	c.393G>A	c.(391-393)CAG>CAA	p.Q131Q	SH3BGR_uc002yxz.2_Silent_p.Q20Q	NM_007341	NP_031367	P55822	SH3BG_HUMAN	SH3-binding domain and glutamic acid-rich	131					protein complex assembly	cytosol	SH3 domain binding|SH3/SH2 adaptor activity				0		all_cancers(19;1.16e-23)|all_epithelial(19;1.22e-20)|Prostate(19;2.55e-06)|Breast(209;0.0133)		STAD - Stomach adenocarcinoma(101;0.00151)		TGCCTCCCCAGATCTTCAATG	0.398000													4	32					0	0	1	0	0
IGSF5	150084	broad.mit.edu	37	21	41142863	41142863	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:41142863C>T	uc002yyo.2	+	4	542	c.439C>T	c.(439-441)CCC>TCC	p.P147S		NM_001080444	NP_001073913	Q9NSI5	IGSF5_HUMAN	immunoglobulin superfamily 5 like	147	Ig-like V-type 2.|Extracellular (Potential).					integral to membrane|tight junction					0		Prostate(19;5.35e-06)				GCTGTTCATTCCCAGTGTTAA	0.413000													15	40					0	0	1	0	0
DSCAM	1826	broad.mit.edu	37	21	41496209	41496209	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:41496209G>A	uc002yyq.1	-	20	4061	c.3609C>T	c.(3607-3609)TCC>TCT	p.S1203S	DSCAM_uc002yyr.1_RNA	NM_001389	NP_001380	O60469	DSCAM_HUMAN	Down syndrome cell adhesion molecule isoform	1203	Fibronectin type-III 4.|Extracellular (Potential).				cell adhesion|dendrite self-avoidance|negative regulation of cell adhesion|positive regulation of axon extension involved in axon guidance|positive regulation of phosphorylation	axon|extracellular region|growth cone|integral to plasma membrane|membrane fraction	protein binding			ovary(6)|skin(4)|upper_aerodigestive_tract(1)	11		all_cancers(19;0.186)|Prostate(19;1.15e-05)|all_epithelial(19;0.0103)				CAAAGACCATGGAGGCTGAGG	0.572000													54	78					0	0	1	0	0
TRAPPC10	7109	broad.mit.edu	37	21	45513944	45513944	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:45513944C>T	uc002zea.2	+	20	3167	c.2998C>T	c.(2998-3000)CCC>TCC	p.P1000S	TRAPPC10_uc010gpo.2_Missense_Mutation_p.P711S|TRAPPC10_uc011afa.1_Missense_Mutation_p.P378S|TRAPPC10_uc011afb.1_Missense_Mutation_p.P105S	NM_003274	NP_003265	P48553	TPC10_HUMAN	trafficking protein particle complex 10	1000					vesicle-mediated transport	Golgi apparatus|integral to membrane	binding|sodium ion transmembrane transporter activity			ovary(1)|skin(1)	2						CTCTTTCCAGCCCATCTACAG	0.552000													60	84					0	0	1	0	0
COL6A2	1292	broad.mit.edu	37	21	47533950	47533950	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr21:47533950C>T	uc002zia.1	+	5	846	c.764C>T	c.(763-765)CCT>CTT	p.P255L	COL6A2_uc002zhy.1_Missense_Mutation_p.P255L|COL6A2_uc002zhz.1_Missense_Mutation_p.P255L|COL6A2_uc002zib.1_Intron	NM_001849	NP_001840	P12110	CO6A2_HUMAN	alpha 2 type VI collagen isoform 2C2 precursor	255	Nonhelical region.				axon guidance|cell-cell adhesion|extracellular matrix organization|protein heterotrimerization	collagen|extracellular space|protein complex	extracellular matrix structural constituent|protein binding, bridging			central_nervous_system(7)|ovary(1)	8	Breast(49;0.245)			Colorectal(79;0.0303)|READ - Rectum adenocarcinoma(84;0.0649)		CTGGAAATCCCTGGGCCCTCT	0.562000													11	72					0	0	1	0	0
POTEH	23784	broad.mit.edu	37	22	16266988	16266988	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:16266988C>T	uc010gqp.2	-	9	1513	c.1461G>A	c.(1459-1461)AGG>AGA	p.R487R	POTEH_uc002zlg.1_RNA|POTEH_uc002zlh.1_Silent_p.R206R|POTEH_uc002zlj.1_Silent_p.R322R	NM_001136213	NP_001129685	Q6S545	POTEH_HUMAN	ANKRD26-like family C, member 3	487										skin(1)	1						TTCTGCTTTTCCTTGGTGGAA	0.433000													19	228					0	0	1	0	0
MICAL3	57553	broad.mit.edu	37	22	18371810	18371810	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:18371810G>A	uc002zng.3	-	13	2234	c.1881C>T	c.(1879-1881)CTC>CTT	p.L627L	MICAL3_uc011agl.1_Silent_p.L627L|MICAL3_uc002znh.2_Silent_p.L627L|MICAL3_uc002znj.1_Silent_p.L327L|MICAL3_uc002znk.1_Silent_p.L627L|MICAL3_uc002znl.1_Silent_p.L260L|MICAL3_uc002znm.2_Silent_p.L128L|MICAL3_uc010grf.2_Silent_p.L627L	NM_015241	NP_056056	Q7RTP6	MICA3_HUMAN	microtubule associated monoxygenase, calponin	627						cytoplasm|cytoskeleton	monooxygenase activity|zinc ion binding				0		all_epithelial(15;0.198)		Lung(27;0.0427)		CGCTAGAGGGGAGGGAGTCCT	0.582000											OREG0026284	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	17	27					0	0	1	0	0
DGCR14	8220	broad.mit.edu	37	22	19121890	19121890	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:19121890C>T	uc002zou.2	-	10	1287	c.1250G>A	c.(1249-1251)AGC>AAC	p.S417N	DGCR14_uc002zot.2_Missense_Mutation_p.S338N|DGCR14_uc002zov.2_RNA	NM_022719	NP_073210	Q96DF8	DGC14_HUMAN	DiGeorge syndrome critical region protein 14	417					nervous system development	catalytic step 2 spliceosome				ovary(1)	1	Colorectal(54;0.0993)					TGGTGTGTAGCTGGCCCGCAG	0.687000													7	89					0	0	1	0	0
HIC2	23119	broad.mit.edu	37	22	21800780	21800780	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:21800780C>T	uc002zur.3	+	3	1826	c.1596C>T	c.(1594-1596)CCC>CCT	p.P532P	HIC2_uc002zus.3_Silent_p.P532P	NM_015094	NP_055909	Q96JB3	HIC2_HUMAN	hypermethylated in cancer 2	532	C2H2-type 2.				negative regulation of transcription, DNA-dependent|transcription, DNA-dependent	focal adhesion|nucleus	DNA binding|protein C-terminus binding|zinc ion binding			skin(1)	1	Melanoma(16;0.000465)|Ovarian(15;0.00438)|Colorectal(54;0.0968)	Lung SC(17;0.0262)|all_lung(157;0.205)				TGACACGGCCCTTCCCCTGCA	0.637000													42	134					0	0	1	0	0
SGSM1	129049	broad.mit.edu	37	22	25297916	25297916	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:25297916C>T	uc003abg.2	+	21	3049	c.2892C>T	c.(2890-2892)ATC>ATT	p.I964I	SGSM1_uc003abh.2_Silent_p.I903I|SGSM1_uc010guu.1_Silent_p.I909I|SGSM1_uc003abj.2_Silent_p.I848I|SGSM1_uc003abi.1_Silent_p.I884I	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	964	Rab-GAP TBC.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TGCGTAACATCATGTGCAGGT	0.592000													11	11					0	0	1	0	0
CRYBB1	1414	broad.mit.edu	37	22	26997898	26997898	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:26997898G>A	uc003acy.1	-	5	590	c.520C>T	c.(520-522)CTC>TTC	p.L174F		NM_001887	NP_001878	P53674	CRBB1_HUMAN	crystallin, beta B1	174	Beta/gamma crystallin 'Greek key' 3.				visual perception		structural constituent of eye lens			ovary(1)	1						TAGACCCAGAGACTGGGTGCG	0.592000													52	54					0	0	1	0	0
C22orf42	150297	broad.mit.edu	37	22	32546361	32546361	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:32546361G>A	uc003amd.2	-	7	640	c.599C>T	c.(598-600)TCA>TTA	p.S200L		NM_001010859	NP_001010859	Q6IC83	CV042_HUMAN	chromosome 22 open reading frame 42	200										ovary(1)|skin(1)	2						ACTGAGACCTGATGTCATGAA	0.433000													65	195					0	0	1	0	0
APOL4	80832	broad.mit.edu	37	22	36587353	36587353	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:36587353T>C	uc003aox.2	-	6	1051	c.826A>G	c.(826-828)AGA>GGA	p.R276G	APOL4_uc003aow.2_Missense_Mutation_p.R273G|APOL4_uc010gww.2_Missense_Mutation_p.R118G	NM_145660	NP_663693	Q9BPW4	APOL4_HUMAN	apolipoprotein L4 isoform 2 precursor	276					lipid metabolic process|lipid transport|lipoprotein metabolic process	extracellular region	lipid binding				0						CCACGTGTTCTCAGTGTCTCA	0.502000													6	57					0	0	1	0	0
FOXRED2	80020	broad.mit.edu	37	22	36900403	36900403	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:36900403T>A	uc003apn.3	-	3	899	c.791A>T	c.(790-792)AAT>ATT	p.N264I	FOXRED2_uc003apo.3_Missense_Mutation_p.N264I|FOXRED2_uc003app.3_Missense_Mutation_p.N264I	NM_024955	NP_079231	Q8IWF2	FXRD2_HUMAN	FAD-dependent oxidoreductase domain containing 2	264					ER-associated protein catabolic process	endoplasmic reticulum lumen	flavin adenine dinucleotide binding|oxidoreductase activity|protein binding			lung(1)|kidney(1)	2						CAGCAGGCCATTGTTGATGGC	0.592000													27	40					0	0	1	0	0
CBX7	23492	broad.mit.edu	37	22	39530047	39530047	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:39530047G>T	uc003axb.2	-	6	694	c.605C>A	c.(604-606)GCC>GAC	p.A202D	CBX7_uc003axc.2_Missense_Mutation_p.A109D	NM_175709	NP_783640	O95931	CBX7_HUMAN	chromobox homolog 7	202					chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex				ovary(1)	1	Melanoma(58;0.04)					GGCCAGGTCGGCATCTGCTGC	0.647000													19	169					3.83957e-06	3.89327e-06	1	1	0
CBX7	23492	broad.mit.edu	37	22	39530693	39530693	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:39530693G>A	uc003axb.2	-	5	400	c.311C>T	c.(310-312)TCC>TTC	p.S104F	CBX7_uc003axc.2_Intron	NM_175709	NP_783640	O95931	CBX7_HUMAN	chromobox homolog 7	104					chromatin modification|negative regulation of transcription from RNA polymerase II promoter|transcription, DNA-dependent	nuclear chromatin|PcG protein complex				ovary(1)	1	Melanoma(58;0.04)					GCACGTCAGGGAGAAGCAGAG	0.701000													5	9					0	0	1	0	0
MKL1	57591	broad.mit.edu	37	22	40816901	40816901	+	Missense_Mutation	SNP	C	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:40816901C>G	uc003ayv.1	-	7	1038	c.831G>C	c.(829-831)CAG>CAC	p.Q277H	MKL1_uc003ayw.1_Missense_Mutation_p.Q277H|MKL1_uc010gye.1_Missense_Mutation_p.Q277H|MKL1_uc010gyf.1_Missense_Mutation_p.Q227H	NM_020831	NP_065882	Q969V6	MKL1_HUMAN	megakaryoblastic leukemia 1 protein	277	Gln-rich.				positive regulation of transcription from RNA polymerase II promoter|smooth muscle cell differentiation|transcription, DNA-dependent	cytoplasm|nucleus	actin monomer binding|leucine zipper domain binding|nucleic acid binding|transcription coactivator activity			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						GCTGCTGCTGCTGGTTGAGGA	0.657000			T	RBM15	acute megakaryocytic leukemia								3	129					0	0	1	0	0
EP300	2033	broad.mit.edu	37	22	41572389	41572389	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:41572389G>T	uc003azl.3	+	30	5313	c.4918G>T	c.(4918-4920)GAG>TAG	p.E1640*		NM_001429	NP_001420	Q09472	EP300_HUMAN	E1A binding protein p300	1640	Binding region for E1A adenovirus.				apoptosis|cell cycle|DNA damage response, signal transduction by p53 class mediator resulting in induction of apoptosis|histone H4 acetylation|interspecies interaction between organisms|N-terminal peptidyl-lysine acetylation|positive regulation of sequence-specific DNA binding transcription factor activity|positive regulation of transcription from RNA polymerase II promoter|regulation of androgen receptor signaling pathway|response to estrogen stimulus|response to hypoxia	centrosome|histone acetyltransferase complex	androgen receptor binding|beta-catenin binding|DNA binding|histone acetyltransferase activity|RNA polymerase II activating transcription factor binding|transcription coactivator activity|zinc ion binding			haematopoietic_and_lymphoid_tissue(22)|large_intestine(13)|breast(9)|central_nervous_system(5)|upper_aerodigestive_tract(4)|pancreas(4)|lung(3)|ovary(2)|stomach(1)|skin(1)	64						CAAGCACCTGGAGTTCTCTTC	0.567000			T| N|F|Mis|O	MLL|RUNXBP2	colorectal|breast|pancreatic|AML|ALL|DLBCL				Rubinstein-Taybi_syndrome				18	105					8.04996e-18	8.26855e-18	1	1	0
PARVG	64098	broad.mit.edu	37	22	44594524	44594524	+	Silent	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:44594524C>A	uc011aqe.1	+	12	1159	c.735C>A	c.(733-735)CTC>CTA	p.L245L	PARVG_uc003bep.2_Silent_p.L245L|PARVG_uc011aqf.1_Silent_p.L245L|PARVG_uc003beq.2_RNA|PARVG_uc003ber.2_RNA	NM_001137605	NP_001131077	Q9HBI0	PARVG_HUMAN	parvin, gamma	245	CH 2.				cell-matrix adhesion	cytoplasm|cytoskeleton|focal adhesion	actin binding				0		Ovarian(80;0.024)|all_neural(38;0.0299)				TCATCTTACTCTTGCTGATTG	0.269000													35	220					5.2432e-18	5.39195e-18	1	1	0
CNTN4	152330	broad.mit.edu	37	3	3097837	3097837	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:3097837C>T	uc003bpc.2	+	24	3235	c.3014C>T	c.(3013-3015)TCG>TTG	p.S1005L	CNTN4_uc003bpe.2_Missense_Mutation_p.S677L|CNTN4_uc003bpf.2_Missense_Mutation_p.S676L|CNTN4_uc003bpg.2_Missense_Mutation_p.S261L	NM_175607	NP_783200	Q8IWV2	CNTN4_HUMAN	contactin 4 isoform a precursor	1005					axon guidance|axonal fasciculation|brain development|negative regulation of neuron differentiation|neuron cell-cell adhesion|regulation of synaptic plasticity	anchored to membrane|axon|extracellular region|plasma membrane	protein binding			large_intestine(2)|ovary(2)|lung(1)|central_nervous_system(1)|pancreas(1)	7		Ovarian(110;0.156)		Epithelial(13;0.000695)|all cancers(10;0.0047)|OV - Ovarian serous cystadenocarcinoma(96;0.01)		GCTTCCACTTCGAATGCATGT	0.468000													24	66					0	0	1	0	0
GRM7	2917	broad.mit.edu	37	3	7503289	7503289	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:7503289G>A	uc003bqm.2	+	7	1669	c.1395G>A	c.(1393-1395)GTG>GTA	p.V465V	GRM7_uc011ata.1_RNA|GRM7_uc011atb.1_RNA|GRM7_uc010hcf.2_RNA|GRM7_uc011atc.1_RNA|GRM7_uc010hcg.2_Silent_p.V465V|GRM7_uc003bql.2_Silent_p.V465V|GRM7_uc003bqn.1_Silent_p.V48V|GRM7_uc010hch.1_5'UTR	NM_000844	NP_000835	Q14831	GRM7_HUMAN	glutamate receptor, metabotropic 7 isoform a	465	Extracellular (Potential).				negative regulation of adenylate cyclase activity|negative regulation of cAMP biosynthetic process|negative regulation of glutamate secretion|sensory perception of smell|sensory perception of sound|synaptic transmission	asymmetric synapse|axon|cell cortex|dendritic shaft|integral to plasma membrane|postsynaptic membrane|presynaptic active zone	adenylate cyclase inhibitor activity|calcium ion binding|glutamate binding|group III metabotropic glutamate receptor activity|PDZ domain binding|serine binding			ovary(4)|lung(3)	7					L-Glutamic Acid(DB00142)	GCACTCCAGTGATGTTTAACA	0.453000													31	103					0	0	1	0	0
CPNE9	151835	broad.mit.edu	37	3	9757669	9757669	+	Silent	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:9757669C>A	uc003bsd.2	+	13	1005	c.834C>A	c.(832-834)CTC>CTA	p.L278L		NM_153635	NP_705899	Q8IYJ1	CPNE9_HUMAN	copine-like protein	278										ovary(2)	2	Medulloblastoma(99;0.227)					TGACGCTGCTCTCCTTCTCTG	0.532000											OREG0015381	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	5	16					8.12818e-05	8.21315e-05	1	1	0
PRRT3	285368	broad.mit.edu	37	3	9989669	9989669	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:9989669C>T	uc003bul.2	-	4	1318	c.1188G>A	c.(1186-1188)TGG>TGA	p.W396*	CIDEC_uc003bto.2_Intron|PRRT3_uc003buk.2_RNA	NM_207351	NP_997234	Q5FWE3	PRRT3_HUMAN	proline-rich transmembrane protein 3 precursor	396	Extracellular (Potential).|Pro-rich.					integral to membrane					0						GGCGCCCCGGCCACTCCTCGG	0.532000													3	12					0	0	1	0	0
SLC6A11	6538	broad.mit.edu	37	3	10980040	10980040	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:10980040G>A	uc003bvz.2	+	14	1885	c.1851G>A	c.(1849-1851)AAG>AAA	p.K617K		NM_014229	NP_055044	P48066	S6A11_HUMAN	solute carrier family 6 (neurotransmitter	617	Cytoplasmic (Potential).				neurotransmitter secretion	integral to plasma membrane	gamma-aminobutyric acid:sodium symporter activity|neurotransmitter:sodium symporter activity			skin(3)|ovary(1)	4				OV - Ovarian serous cystadenocarcinoma(96;0.229)		CCAAACTCAAGAGTGACGGGA	0.557000													33	134					0	0	1	0	0
XPC	7508	broad.mit.edu	37	3	14208691	14208691	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:14208691C>T	uc011ave.1	-	5	703	c.599G>A	c.(598-600)GGG>GAG	p.G200E	XPC_uc011avf.1_Missense_Mutation_p.G7E|XPC_uc011avg.1_Missense_Mutation_p.G163E	NM_004628	NP_004619	Q01831	XPC_HUMAN	xeroderma pigmentosum, complementation group C	200					nucleotide-excision repair, DNA damage recognition|nucleotide-excision repair, DNA damage removal	cytoplasm|nucleoplasm|XPC complex	bubble DNA binding|damaged DNA binding|loop DNA binding|protein binding|single-stranded DNA binding			ovary(2)|breast(1)	3						CTCATGGACCCCTTTATTGAA	0.413000			Mis|N|F|S			skin basal cell|skin squamous cell|melanoma		NER	Xeroderma_Pigmentosum				4	15					0	0	1	0	0
ARPP21	10777	broad.mit.edu	37	3	35763116	35763116	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:35763116G>A	uc003cgb.2	+	14	1279	c.1015G>A	c.(1015-1017)GGG>AGG	p.G339R	ARPP21_uc003cga.2_Missense_Mutation_p.G285R|ARPP21_uc011axy.1_Missense_Mutation_p.G305R|ARPP21_uc003cgf.2_Missense_Mutation_p.G140R|ARPP21_uc003cgg.2_5'UTR	NM_016300	NP_057384	Q9UBL0	ARP21_HUMAN	cyclic AMP-regulated phosphoprotein, 21 kD	339	Ser-rich.					cytoplasm	nucleic acid binding			ovary(2)|skin(1)	3						AGATGGCTCAGGGAGAACATC	0.537000													7	30					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38603976	38603976	+	Missense_Mutation	SNP	G	T	T	rs28937319		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:38603976G>T	uc003cio.2	-	22	4087	c.3893C>A	c.(3892-3894)CCC>CAC	p.P1298H	SCN5A_uc003cin.2_Missense_Mutation_p.P1297H|SCN5A_uc003cil.3_Missense_Mutation_p.P1298H|SCN5A_uc010hhi.2_Missense_Mutation_p.P1298H|SCN5A_uc010hhk.2_Missense_Mutation_p.P1297H|SCN5A_uc011ayr.1_Missense_Mutation_p.P1244H|SCN5A_uc010hhj.1_Missense_Mutation_p.P908H	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	1298	Helical; Voltage-sensor; Name=S4 of repeat III; (Potential).				blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGACTTGATGGGGCCCATCTC	0.612000													5	15					3.59834e-05	3.64018e-05	1	1	0
SCN5A	6331	broad.mit.edu	37	3	38627465	38627465	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:38627465G>A	uc003cio.2	-	16	2698	c.2504C>T	c.(2503-2505)TCA>TTA	p.S835L	SCN5A_uc003cin.2_Missense_Mutation_p.S835L|SCN5A_uc003cil.3_Missense_Mutation_p.S835L|SCN5A_uc010hhi.2_Missense_Mutation_p.S835L|SCN5A_uc010hhk.2_Missense_Mutation_p.S835L|SCN5A_uc011ayr.1_Missense_Mutation_p.S835L|SCN5A_uc010hhj.1_Missense_Mutation_p.S446L	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	835					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	TGCCCCCACTGAGTTCCCGAT	0.562000													15	41					0	0	1	0	0
SCN5A	6331	broad.mit.edu	37	3	38662381	38662381	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:38662381G>A	uc003cio.2	-	5	758	c.564C>T	c.(562-564)TTC>TTT	p.F188F	SCN5A_uc003cin.2_Silent_p.F188F|SCN5A_uc003cil.3_Silent_p.F188F|SCN5A_uc010hhi.2_Silent_p.F188F|SCN5A_uc010hhk.2_Silent_p.F188F|SCN5A_uc011ayr.1_Silent_p.F188F|SCN5A_uc010hhl.1_Intron	NM_198056	NP_932173	Q14524	SCN5A_HUMAN	voltage-gated sodium channel type V alpha	188					blood circulation|cellular response to calcium ion|muscle contraction|regulation of heart contraction	sarcolemma|voltage-gated sodium channel complex	protein binding|voltage-gated sodium channel activity			ovary(4)|pancreas(2)|skin(2)|central_nervous_system(1)	9	Medulloblastoma(35;0.163)			KIRC - Kidney renal clear cell carcinoma(284;0.0822)|Kidney(284;0.1)	Benzonatate(DB00868)|Bepridil(DB01244)|Carbamazepine(DB00564)|Cocaine(DB00907)|Dibucaine(DB00527)|Disopyramide(DB00280)|Encainide(DB01228)|Ethotoin(DB00754)|Flecainide(DB01195)|Fosphenytoin(DB01320)|Hexylcaine(DB00473)|Indecainide(DB00192)|Lamotrigine(DB00555)|Lidocaine(DB00281)|Mephenytoin(DB00532)|Mexiletine(DB00379)|Mibefradil(DB01388)|Moricizine(DB00680)|Oxcarbazepine(DB00776)|Phenytoin(DB00252)|Prilocaine(DB00750)|Procainamide(DB01035)|Propafenone(DB01182)|Quinidine(DB00908)|Riluzole(DB00740)|Tocainide(DB01056)|Verapamil(DB00661)	GGTCCCGAAGGAAAGTGAACG	0.448000													6	11					0	0	1	0	0
SCN10A	6336	broad.mit.edu	37	3	38804994	38804994	+	Splice_Site	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:38804994A>T	uc003ciq.2	-	5	691	c.691_splice	c.e5+1	p.G231_splice		NM_006514	NP_006505	Q9Y5Y9	SCNAA_HUMAN	sodium channel, voltage-gated, type X, alpha						sensory perception	voltage-gated sodium channel complex				ovary(5)|skin(3)|large_intestine(1)|kidney(1)	10				KIRC - Kidney renal clear cell carcinoma(284;0.0769)|Kidney(284;0.0945)	Benzocaine(DB01086)|Bupivacaine(DB00297)|Chloroprocaine(DB01161)|Cocaine(DB00907)|Dibucaine(DB00527)|Dyclonine(DB00645)|Hexylcaine(DB00473)|Levobupivacaine(DB01002)|Lidocaine(DB00281)|Mepivacaine(DB00961)|Oxybuprocaine(DB00892)|Procaine(DB00721)|Proparacaine(DB00807)|Ropivacaine(DB00296)	ATAAATGCTCACCTGGGATCA	0.284000													14	79					0	0	1	0	0
CCK	885	broad.mit.edu	37	3	42299709	42299709	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:42299709T>A	uc003clc.1	-	3	438	c.229A>T	c.(229-231)ATG>TTG	p.M77L	CCK_uc003cld.1_Missense_Mutation_p.M77L	NM_000729	NP_000720	P06307	CCKN_HUMAN	cholecystokinin preproprotein	77					axonogenesis|eating behavior|neuron migration		neuropeptide hormone activity			central_nervous_system(1)	1		Ovarian(412;0.0728)		KIRC - Kidney renal clear cell carcinoma(284;0.219)		ACGATGGACATTCGTCCAGAA	0.478000													12	52					0	0	1	0	0
HHATL	57467	broad.mit.edu	37	3	42734255	42734255	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:42734255C>T	uc003clw.2	-	13	1650	c.1503G>A	c.(1501-1503)GAG>GAA	p.E501E	HHATL_uc003clx.2_Silent_p.E501E	NM_020707	NP_065758	Q9HCP6	HHATL_HUMAN	hedgehog acyltransferase-like	501					negative regulation of N-terminal protein palmitoylation	endoplasmic reticulum membrane|integral to membrane|perinuclear region of cytoplasm		p.E501G(1)		ovary(3)	3				KIRC - Kidney renal clear cell carcinoma(284;0.215)		ACTCCGGCTTCTCTTTGTCCT	0.552000													10	38					0	0	1	0	0
ZNF197	10168	broad.mit.edu	37	3	44684452	44684452	+	Silent	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:44684452T>C	uc003cnm.2	+	6	2036	c.1830T>C	c.(1828-1830)ATT>ATC	p.I610I	ZNF197_uc003cnn.2_Intron|ZNF197_uc003cno.2_Intron|ZNF197_uc003cnp.2_Intron	NM_006991	NP_008922	O14709	ZN197_HUMAN	zinc finger protein 197 isoform 1	610	C2H2-type 9.				viral reproduction	nucleus	DNA binding|sequence-specific DNA binding transcription factor activity|zinc ion binding			ovary(3)|skin(1)	4				KIRC - Kidney renal clear cell carcinoma(197;0.0478)|Kidney(197;0.0598)		CAAACTTCATTGACCATAAGA	0.413000													19	43					0	0	1	0	0
SCAP	22937	broad.mit.edu	37	3	47456639	47456639	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:47456639C>T	uc003crh.1	-	19	3343	c.3088G>A	c.(3088-3090)GAT>AAT	p.D1030N	SCAP_uc011baz.1_Missense_Mutation_p.D774N|SCAP_uc003crg.2_Missense_Mutation_p.D637N|uc003cri.2_RNA	NM_012235	NP_036367	Q12770	SCAP_HUMAN	SREBF chaperone protein	1030	Interaction with SREBF2 (By similarity).|Cytoplasmic (By similarity).|WD 3.				cholesterol metabolic process|negative regulation of cholesterol biosynthetic process|positive regulation of low-density lipoprotein particle receptor biosynthetic process|positive regulation of transcription via sterol regulatory element binding involved in ER-nuclear sterol response pathway	endoplasmic reticulum membrane|ER to Golgi transport vesicle membrane|Golgi membrane|integral to membrane	unfolded protein binding			ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.000278)|KIRC - Kidney renal clear cell carcinoma(197;0.00592)|Kidney(197;0.00679)		GAGAAGAAATCAAGGGAACCG	0.622000													17	30					0	0	1	0	0
PFKFB4	5210	broad.mit.edu	37	3	48572951	48572951	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:48572951G>A	uc003ctv.2	-	9	998	c.981C>T	c.(979-981)ATC>ATT	p.I327I	PFKFB4_uc003ctw.2_Silent_p.I136I|PFKFB4_uc010hkc.2_Silent_p.I327I|PFKFB4_uc003ctx.2_Silent_p.I284I|PFKFB4_uc010hkb.2_Intron|PFKFB4_uc011bbm.1_Silent_p.I316I|PFKFB4_uc011bbn.1_Intron	NM_004567	NP_004558	Q16877	F264_HUMAN	6-phosphofructo-2-kinase/fructose-2,	327	Fructose-2,6-bisphosphatase.				fructose 2,6-bisphosphate metabolic process|glycolysis	cytosol	6-phosphofructo-2-kinase activity|ATP binding|fructose-2,6-bisphosphate 2-phosphatase activity			breast(1)	1				BRCA - Breast invasive adenocarcinoma(193;0.0003)|KIRC - Kidney renal clear cell carcinoma(197;0.00596)|Kidney(197;0.00684)		CTACCGCATCGATCTCGTTGA	0.547000													7	29					0	0	1	0	0
GPX1	2876	broad.mit.edu	37	3	49395072	49395072	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:49395072C>T	uc011bcl.1	-	3	441	c.361G>A	c.(361-363)GGG>AGG	p.G121R	GPX1_uc011bcm.1_3'UTR	NM_000581	NP_000572	P07203	GPX1_HUMAN	glutathione peroxidase 1 isoform 1	121					anti-apoptosis|cell redox homeostasis|glutathione metabolic process|heart contraction|hydrogen peroxide catabolic process|negative regulation of caspase activity|purine base metabolic process|purine nucleotide catabolic process|regulation of gene expression, epigenetic|regulation of mammary gland epithelial cell proliferation|regulation of proteasomal protein catabolic process|release of cytochrome c from mitochondria|response to selenium ion|UV protection	cytosol|mitochondrion	endopeptidase inhibitor activity|glutathione peroxidase activity|SH3 domain binding			large_intestine(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.00216)|KIRC - Kidney renal clear cell carcinoma(197;0.00244)	Glutathione(DB00143)	GGGTGCGCCCCCGCACCGTTC	0.622000													11	45					0	0	1	0	0
BSN	8927	broad.mit.edu	37	3	49692808	49692808	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:49692808C>T	uc003cxe.3	+	5	5933	c.5819C>T	c.(5818-5820)CCC>CTC	p.P1940L		NM_003458	NP_003449	Q9UPA5	BSN_HUMAN	bassoon protein	1940					synaptic transmission	cell junction|cytoplasm|cytoskeleton|nucleus|synaptosome	metal ion binding			ovary(5)|pancreas(1)|central_nervous_system(1)|skin(1)	8				BRCA - Breast invasive adenocarcinoma(193;6.66e-05)|KIRC - Kidney renal clear cell carcinoma(197;0.0032)|Kidney(197;0.00336)		AGCAGCAGCCCCTTCTATGGT	0.682000													9	39					0	0	1	0	0
IQCF1	132141	broad.mit.edu	37	3	51929065	51929065	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:51929065G>A	uc003dbv.2	-	4	557	c.459C>T	c.(457-459)ATC>ATT	p.I153I	IQCF1_uc003dbq.3_Intron	NM_152397	NP_689610	Q8N6M8	IQCF1_HUMAN	IQ motif containing F1	153	IQ 2.									ovary(1)	1				BRCA - Breast invasive adenocarcinoma(193;8.01e-05)|Kidney(197;0.000541)|KIRC - Kidney renal clear cell carcinoma(197;0.000716)		AAGCCTGGATGATGCGAACAG	0.607000													60	145					0	0	1	0	0
DNAH1	25981	broad.mit.edu	37	3	52378654	52378655	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:52378654_52378655CC>TT	uc011bef.1	+	9	1696_1697	c.1435_1436CC>TT	c.(1435-1437)CCT>TTT	p.P479F	DNAH1_uc003ddt.1_Missense_Mutation_p.P479F	NM_015512	NP_056327	Q9P2D7	DYH1_HUMAN	dynein, axonemal, heavy chain 1	479	Stem (By similarity).				ciliary or flagellar motility|microtubule-based movement|response to mechanical stimulus	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			large_intestine(3)	3				BRCA - Breast invasive adenocarcinoma(193;2.02e-05)|OV - Ovarian serous cystadenocarcinoma(275;0.000207)|Kidney(197;0.0022)|KIRC - Kidney renal clear cell carcinoma(197;0.00245)		GGAGCAGGTGCCTGAGCGAGGT	0.599000													4	18					0	0	1	0	0
STAB1	23166	broad.mit.edu	37	3	52552608	52552608	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:52552608T>A	uc003dej.2	+	47	4940	c.4866T>A	c.(4864-4866)GAT>GAA	p.D1622E	STAB1_uc003dek.1_5'Flank|STAB1_uc003del.2_5'Flank	NM_015136	NP_055951	Q9NY15	STAB1_HUMAN	stabilin 1 precursor	1622	Extracellular (Potential).|FAS1 5.				cell adhesion|cell-cell signaling|defense response to bacterium|inflammatory response|negative regulation of angiogenesis|receptor-mediated endocytosis	integral to plasma membrane	bacterial cell surface binding|hyaluronic acid binding|low-density lipoprotein receptor activity|protein disulfide oxidoreductase activity|scavenger receptor activity			large_intestine(3)|upper_aerodigestive_tract(2)|central_nervous_system(1)|breast(1)|skin(1)|pancreas(1)	9				BRCA - Breast invasive adenocarcinoma(193;1.73e-05)|Kidney(197;0.00182)|KIRC - Kidney renal clear cell carcinoma(197;0.00205)|OV - Ovarian serous cystadenocarcinoma(275;0.0482)		CGCACGCAGATCTAATGAGCA	0.622000													4	5					0	0	1	0	0
ERC2	26059	broad.mit.edu	37	3	56468982	56468982	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:56468982G>A	uc003dhr.1	-	2	310	c.54C>T	c.(52-54)TCC>TCT	p.S18S		NM_015576	NP_056391	O15083	ERC2_HUMAN	cytomatrix protein p110	18						cell junction|cytoplasm|cytoskeleton|growth cone|presynaptic membrane|synaptosome	protein binding			ovary(2)	2				KIRC - Kidney renal clear cell carcinoma(284;0.0667)|Kidney(284;0.0873)|OV - Ovarian serous cystadenocarcinoma(275;0.219)		GCAAACGAGGGGATCTGGAAG	0.463000													14	26					0	0	1	0	0
ADAMTS9	56999	broad.mit.edu	37	3	64518921	64518921	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:64518921C>T	uc003dmg.2	-	38	5671	c.5639G>A	c.(5638-5640)GGA>GAA	p.G1880E	ADAMTS9_uc011bfo.1_Missense_Mutation_p.G1852E|ADAMTS9_uc011bfp.1_Missense_Mutation_p.G791E	NM_182920	NP_891550	Q9P2N4	ATS9_HUMAN	ADAM metallopeptidase with thrombospondin type 1	1880	GON.				glycoprotein catabolic process|multicellular organismal development|proteolysis	proteinaceous extracellular matrix	metalloendopeptidase activity|zinc ion binding			ovary(2)|urinary_tract(1)|skin(1)	4		Lung NSC(201;0.00682)		BRCA - Breast invasive adenocarcinoma(55;0.00142)|Kidney(15;0.00202)|KIRC - Kidney renal clear cell carcinoma(15;0.00221)		CAAGCCGGTTCCATAAAGGTT	0.428000													17	44					0	0	1	0	0
LRIG1	26018	broad.mit.edu	37	3	66512876	66512876	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:66512876C>T	uc003dmx.2	-	2	290	c.276G>A	c.(274-276)CCG>CCA	p.P92P	LRIG1_uc010hoa.2_Silent_p.P92P	NM_015541	NP_056356	Q96JA1	LRIG1_HUMAN	leucine-rich repeats and immunoglobulin-like	92	Extracellular (Potential).					integral to membrane				skin(3)|ovary(2)	5		Lung NSC(201;0.0101)		BRCA - Breast invasive adenocarcinoma(55;0.00047)		CCTGTAGGTTCGGCAAGTCCT	0.478000													9	21					0	0	1	0	0
KBTBD8	84541	broad.mit.edu	37	3	67054484	67054484	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:67054484C>T	uc003dmy.2	+	3	1146	c.1093C>T	c.(1093-1095)CAT>TAT	p.H365Y	KBTBD8_uc011bfv.1_Intron	NM_032505	NP_115894	Q8NFY9	KBTB8_HUMAN	T-cell activation kelch repeat protein	365	Kelch 1.									ovary(2)|large_intestine(1)|breast(1)	4		Lung NSC(201;0.0765)		BRCA - Breast invasive adenocarcinoma(55;6.02e-06)|KIRC - Kidney renal clear cell carcinoma(39;0.105)|Kidney(39;0.125)		GATGTATGATCATTCCACCAA	0.448000													18	50					0	0	1	0	0
MORC1	27136	broad.mit.edu	37	3	108719488	108719488	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:108719488C>T	uc003dxl.2	-	21	2190	c.2103G>A	c.(2101-2103)ATG>ATA	p.M701I	MORC1_uc011bhn.1_Missense_Mutation_p.M680I	NM_014429	NP_055244	Q86VD1	MORC1_HUMAN	MORC family CW-type zinc finger 1	701					cell differentiation|multicellular organismal development|spermatogenesis	nucleus	ATP binding|zinc ion binding			ovary(3)|skin(3)|breast(2)	8						GCTTCCTTTTCATTTCCCAAG	0.363000													18	59					0	0	1	0	0
CD96	10225	broad.mit.edu	37	3	111297894	111297894	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:111297894A>C	uc003dxw.2	+	5	782	c.612A>C	c.(610-612)GAA>GAC	p.E204D	CD96_uc003dxv.2_Missense_Mutation_p.E188D|CD96_uc003dxx.2_Missense_Mutation_p.E188D|CD96_uc010hpy.1_Missense_Mutation_p.E188D	NM_198196	NP_937839	P40200	TACT_HUMAN	CD96 antigen isoform 1 precursor	204	Extracellular (Potential).|Ig-like V-type 2.				cell adhesion|immune response|regulation of immune response	integral to plasma membrane				skin(2)|central_nervous_system(1)	3						GAACTCAGGAAACACTTATCT	0.279000									Opitz_Trigonocephaly_syndrome				29	75					0	0	1	0	0
BOC	91653	broad.mit.edu	37	3	112993366	112993366	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:112993366C>T	uc003dzx.2	+	9	2000	c.1379C>T	c.(1378-1380)CCG>CTG	p.P460L	BOC_uc003dzy.2_Missense_Mutation_p.P460L|BOC_uc003dzz.2_Missense_Mutation_p.P460L|BOC_uc003eab.2_Missense_Mutation_p.P161L	NM_033254	NP_150279	Q9BWV1	BOC_HUMAN	brother of CDO precursor	460	Extracellular (Potential).				cell adhesion|muscle cell differentiation|positive regulation of myoblast differentiation	integral to membrane|plasma membrane	protein binding			ovary(3)|breast(1)|central_nervous_system(1)|pancreas(1)	6			Epithelial(53;0.227)			CCTGCTTCCCCGCAGTGTCCA	0.647000													10	26					0	0	1	0	0
CCDC52	152185	broad.mit.edu	37	3	113176007	113176007	+	Silent	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:113176007A>G	uc003eag.3	-	13	1924	c.1633T>C	c.(1633-1635)TTA>CTA	p.L545L	CCDC52_uc003eaf.3_RNA|CCDC52_uc003eah.1_Silent_p.L441L	NM_144718	NP_653319	Q8N0Z3	SPICE_HUMAN	coiled-coil domain containing 52	545					cell division|mitosis	centriole|spindle	protein binding				0						GAGAATTTTAAGTTGCTCTTC	0.393000													16	90					0	0	1	0	0
FBXO40	51725	broad.mit.edu	37	3	121342188	121342188	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:121342188G>A	uc003eeg.2	+	3	2122	c.1912G>A	c.(1912-1914)GAG>AAG	p.E638K		NM_016298	NP_057382	Q9UH90	FBX40_HUMAN	F-box protein 40	638					muscle cell differentiation	centrosome|nucleus	ubiquitin-protein ligase activity|zinc ion binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5				GBM - Glioblastoma multiforme(114;0.189)		AGTCCACAGAGAGGTAAGTAA	0.299000													5	30					0	0	1	0	0
GOLGB1	2804	broad.mit.edu	37	3	121415180	121415180	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:121415180G>A	uc003eei.3	-	13	4301	c.4175C>T	c.(4174-4176)CCT>CTT	p.P1392L	GOLGB1_uc010hrc.2_Missense_Mutation_p.P1397L|GOLGB1_uc003eej.3_Missense_Mutation_p.P1358L|GOLGB1_uc011bjm.1_Missense_Mutation_p.P1278L|GOLGB1_uc010hrd.1_Missense_Mutation_p.P1356L	NM_004487	NP_004478	Q14789	GOGB1_HUMAN	golgi autoantigen, golgin subfamily b,	1392	Cytoplasmic (Potential).|Potential.				Golgi organization	ER-Golgi intermediate compartment|Golgi membrane|Golgi stack|integral to membrane	protein binding			ovary(6)|breast(2)|skin(2)	10				GBM - Glioblastoma multiforme(114;0.0989)		ATCCAGTTTAGGTTGCAATTC	0.418000													31	112					0	0	1	0	0
CASR	846	broad.mit.edu	37	3	122003955	122003955	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:122003955C>T	uc003eev.3	+	7	3526	c.3154C>T	c.(3154-3156)CCA>TCA	p.P1052S	CASR_uc003eew.3_Missense_Mutation_p.P1062S	NM_000388	NP_000379	P41180	CASR_HUMAN	calcium-sensing receptor precursor	1052	Cytoplasmic (Potential).				anatomical structure morphogenesis|calcium ion import|cellular calcium ion homeostasis|chemosensory behavior|detection of calcium ion|ossification	integral to plasma membrane	G-protein coupled receptor activity|phosphatidylinositol phospholipase C activity			ovary(4)|skin(2)|upper_aerodigestive_tract(1)	7				GBM - Glioblastoma multiforme(114;0.226)	Cinacalcet(DB01012)	AGAGTTGTCCCCAGCACTTGT	0.522000													22	118					0	0	1	0	0
ADCY5	111	broad.mit.edu	37	3	123049764	123049764	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:123049764T>C	uc003egh.1	-	5	1618	c.1618A>G	c.(1618-1620)ATG>GTG	p.M540V	ADCY5_uc003egg.1_Missense_Mutation_p.M173V|ADCY5_uc003egi.1_Missense_Mutation_p.M99V	NM_183357	NP_899200	O95622	ADCY5_HUMAN	adenylate cyclase 5	540	Guanylate cyclase 1.|Cytoplasmic (Potential).				activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|plasma membrane	adenylate cyclase activity|ATP binding|metal ion binding			ovary(4)	4				GBM - Glioblastoma multiforme(114;0.0342)		TCCATGCCCATCTCCACACAG	0.582000													15	64					0	0	1	0	0
IFT122	55764	broad.mit.edu	37	3	129207101	129207101	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:129207101C>T	uc003emm.2	+	16	2059	c.1853C>T	c.(1852-1854)TCC>TTC	p.S618F	IFT122_uc003eml.2_Missense_Mutation_p.S669F|IFT122_uc003emn.2_Missense_Mutation_p.S559F|IFT122_uc003emo.2_Missense_Mutation_p.S507F|IFT122_uc003emp.2_Missense_Mutation_p.S468F|IFT122_uc010htc.2_Missense_Mutation_p.S610F|IFT122_uc011bky.1_Missense_Mutation_p.S409F|IFT122_uc003emq.2_Missense_Mutation_p.S458F|IFT122_uc003emr.2_Missense_Mutation_p.S409F|IFT122_uc011bla.1_Missense_Mutation_p.S409F|IFT122_uc010hte.2_5'UTR|IFT122_uc003ems.2_Missense_Mutation_p.S17F|IFT122_uc011bkx.1_Missense_Mutation_p.S458F|IFT122_uc011bkz.1_RNA|IFT122_uc010htd.1_Missense_Mutation_p.S97F	NM_052989	NP_443715	Q9HBG6	IF122_HUMAN	WD repeat domain 10 isoform 2	618					camera-type eye morphogenesis|cilium morphogenesis|embryonic body morphogenesis|embryonic heart tube development|limb development|neural tube closure	microtubule basal body|photoreceptor connecting cilium				ovary(1)|skin(1)	2						ATCCTGCAGTCCGCTCCCATG	0.488000													12	46					0	0	1	0	0
PRKCI	5584	broad.mit.edu	37	3	169999740	169999740	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:169999740C>T	uc003fgs.2	+	11	1289	c.1051C>T	c.(1051-1053)CCT>TCT	p.P351S		NM_002740	NP_002731	P41743	KPCI_HUMAN	protein kinase C, iota	351	Protein kinase.				anti-apoptosis|cellular membrane organization|cellular response to insulin stimulus|establishment or maintenance of epithelial cell apical/basal polarity|intracellular signal transduction|nerve growth factor receptor signaling pathway|positive regulation of establishment of protein localization in plasma membrane|positive regulation of glucose import|protein targeting to membrane|secretion|tight junction assembly|vesicle-mediated transport	cytosol|endosome|nucleus|polarisome	ATP binding|phospholipid binding|protein binding|protein kinase C activity|zinc ion binding			lung(2)|ovary(1)|breast(1)|skin(1)	5	all_cancers(22;6.45e-23)|all_epithelial(15;8.52e-28)|all_lung(20;6.31e-17)|Lung NSC(18;2.61e-16)|Ovarian(172;0.000337)|Breast(254;0.169)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			AAGAAAACTTCCTGAAGAACA	0.373000													34	62					0	0	1	0	0
SKIL	6498	broad.mit.edu	37	3	170108030	170108030	+	Silent	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:170108030T>C	uc003fgu.2	+	5	2161	c.1449T>C	c.(1447-1449)AAT>AAC	p.N483N	SKIL_uc011bps.1_Silent_p.N463N|SKIL_uc003fgv.2_Silent_p.N437N|SKIL_uc003fgw.2_Silent_p.N483N	NM_005414	NP_005405	P12757	SKIL_HUMAN	SKI-like isoform 1	483					cell cycle arrest|negative regulation of cell differentiation|negative regulation of transcription from RNA polymerase II promoter|negative regulation of transforming growth factor beta receptor signaling pathway|positive regulation of axonogenesis|protein heterotrimerization|protein homotrimerization|regulation of apoptosis|regulation of apoptosis|response to antibiotic|response to growth factor stimulus|skeletal muscle tissue development	cytoplasm|PML body	chromatin binding|nucleotide binding|protein complex binding|protein domain specific binding|SMAD binding|transcription corepressor activity|transcription repressor activity			ovary(2)|skin(1)	3	all_cancers(22;7.13e-23)|all_epithelial(15;9.95e-28)|all_lung(20;1.23e-16)|Lung NSC(18;5.15e-16)|Ovarian(172;0.000337)|Breast(254;0.137)		Lung(28;2.71e-13)|STAD - Stomach adenocarcinoma(35;0.197)			TCTCAAATAATTCTACAAGTA	0.328000													23	18					0	0	1	0	0
FNDC3B	64778	broad.mit.edu	37	3	171965445	171965445	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:171965445C>T	uc003fhy.2	+	5	559	c.387C>T	c.(385-387)CAC>CAT	p.H129H	FNDC3B_uc003fhz.3_Silent_p.H129H|FNDC3B_uc003fia.2_Silent_p.H60H	NM_022763	NP_073600	Q53EP0	FND3B_HUMAN	fibronectin type III domain containing 3B	129						endoplasmic reticulum|integral to membrane				ovary(2)|breast(1)	3	all_cancers(22;1.01e-18)|Ovarian(172;0.00167)|Breast(254;0.165)		LUSC - Lung squamous cell carcinoma(14;3.57e-14)|Lung(28;9.39e-14)	GBM - Glioblastoma multiforme(1;0.0494)		ATCTGACTCACCATCCACATT	0.542000													55	272					0	0	1	0	0
ACTL6A	86	broad.mit.edu	37	3	179298431	179298431	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:179298431G>A	uc003fjw.2	+	9	945	c.772G>A	c.(772-774)GTT>ATT	p.V258I	ACTL6A_uc003fjx.2_Missense_Mutation_p.V216I|ACTL6A_uc003fjy.2_Missense_Mutation_p.V216I	NM_004301	NP_004292	O96019	ACL6A_HUMAN	actin-like 6A isoform 1	258					chromatin remodeling|DNA recombination|DNA repair|histone H2A acetylation|histone H4 acetylation|nervous system development|regulation of growth|regulation of transcription, DNA-dependent|signal transduction|transcription, DNA-dependent	Ino80 complex|npBAF complex|NuA4 histone acetyltransferase complex|plasma membrane|SWI/SNF complex	ATP binding|chromatin binding			ovary(1)	1	all_cancers(143;3.94e-16)|Ovarian(172;0.0172)|Breast(254;0.191)		OV - Ovarian serous cystadenocarcinoma(80;5.98e-26)|GBM - Glioblastoma multiforme(14;0.0169)			CTCACAGTGTGTTATCCAGGA	0.264000													5	21					0	0	1	0	0
DVL3	1857	broad.mit.edu	37	3	183885816	183885816	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:183885816C>T	uc003fms.2	+	13	1601	c.1461C>T	c.(1459-1461)TCC>TCT	p.S487S	DVL3_uc011bqw.1_Silent_p.S470S|DVL3_uc003fmt.2_Silent_p.S158S|DVL3_uc003fmu.2_Silent_p.S319S	NM_004423	NP_004414	Q92997	DVL3_HUMAN	dishevelled 3	487	DEP.				canonical Wnt receptor signaling pathway|intracellular signal transduction|positive regulation of JUN kinase activity|positive regulation of protein phosphorylation|positive regulation of transcription, DNA-dependent	cytoplasm	beta-catenin binding|frizzled binding|protease binding|protein heterodimerization activity|signal transducer activity			ovary(1)|lung(1)|breast(1)	3	all_cancers(143;1.12e-10)|Ovarian(172;0.0339)		Epithelial(37;2.08e-34)|OV - Ovarian serous cystadenocarcinoma(80;1.31e-22)			TCACCTTCTCCGAGCAGTGCT	0.582000													79	136					0	0	1	0	0
LIPH	200879	broad.mit.edu	37	3	185229459	185229459	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:185229459T>G	uc003fpm.2	-	9	1231	c.1121A>C	c.(1120-1122)CAC>CCC	p.H374P	LIPH_uc010hyh.2_Missense_Mutation_p.H340P	NM_139248	NP_640341	Q8WWY8	LIPH_HUMAN	lipase, member H precursor	374					lipid catabolic process	extracellular space|plasma membrane	heparin binding|phospholipase activity			ovary(1)|pancreas(1)	2	all_cancers(143;8.87e-11)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(80;1.31e-21)			ACTCACTTGGTGATATTTCTG	0.388000													23	85					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193007754	193007754	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:193007754G>A	uc011bsq.1	-	26	2943	c.2943C>T	c.(2941-2943)TCC>TCT	p.S981S		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	981	Helical; (Potential).				ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		AGGAGAAACAGGAATTCAAAA	0.433000													14	62					0	0	1	0	0
ATP13A5	344905	broad.mit.edu	37	3	193081163	193081163	+	Silent	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:193081163A>G	uc011bsq.1	-	3	246	c.246T>C	c.(244-246)TTT>TTC	p.F82F		NM_198505	NP_940907	Q4VNC0	AT135_HUMAN	ATPase type 13A5	82					ATP biosynthetic process|cation transport	integral to membrane	ATP binding|ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism|metal ion binding			ovary(5)|skin(4)|large_intestine(2)	11	all_cancers(143;1.08e-08)|Ovarian(172;0.0386)		OV - Ovarian serous cystadenocarcinoma(49;5.56e-18)|LUSC - Lung squamous cell carcinoma(58;6.08e-06)|Lung(62;6.49e-06)	GBM - Glioblastoma multiforme(46;0.000307)		TATATCTTTGAAATTCGTCCT	0.413000													16	53					0	0	1	0	0
TFRC	7037	broad.mit.edu	37	3	195794484	195794484	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:195794484G>A	uc003fvz.3	-	9	1228	c.945C>T	c.(943-945)TCC>TCT	p.S315S	TFRC_uc003fwa.3_Silent_p.S315S|TFRC_uc010hzy.2_Silent_p.S234S|TFRC_uc011btr.1_Silent_p.S33S	NM_003234	NP_003225	P02786	TFR1_HUMAN	transferrin receptor	315	Extracellular (Potential).				cellular iron ion homeostasis|endocytosis|interspecies interaction between organisms|proteolysis|transferrin transport|transmembrane transport	coated pit|endosome|integral to plasma membrane|melanosome	peptidase activity|transferrin receptor activity			ovary(3)	3	all_cancers(143;1.94e-08)|Ovarian(172;0.0634)|Breast(254;0.206)		Epithelial(36;1.36e-24)|all cancers(36;3.34e-22)|OV - Ovarian serous cystadenocarcinoma(49;1.17e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.00233)		TGTGATTGAAGGAAGGGAATC	0.463000			T	BCL6	NHL								32	64					0	0	1	0	0
DLG1	1739	broad.mit.edu	37	3	196812524	196812524	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:196812524C>T	uc003fxo.3	-	17	2054	c.1864G>A	c.(1864-1866)GAA>AAA	p.E622K	DLG1_uc011bub.1_Missense_Mutation_p.E506K|DLG1_uc011buc.1_Missense_Mutation_p.E506K|DLG1_uc011bud.1_Missense_Mutation_p.E305K|DLG1_uc003fxn.3_Missense_Mutation_p.E622K|DLG1_uc011bue.1_Missense_Mutation_p.E589K|DLG1_uc010ial.2_Missense_Mutation_p.E622K|DLG1_uc011buf.1_RNA|DLG1_uc003fxp.2_RNA|DLG1_uc010iam.1_Missense_Mutation_p.E589K	NM_001098424	NP_001091894	Q12959	DLG1_HUMAN	discs, large homolog 1 isoform 1	622	SH3.				actin filament organization|axon guidance|cell-cell adhesion|cortical actin cytoskeleton organization|endothelial cell proliferation|establishment or maintenance of cell polarity|interspecies interaction between organisms|mitotic cell cycle G1/S transition checkpoint|negative regulation of mitotic cell cycle|protein localization in plasma membrane|synaptic transmission|tight junction assembly	basolateral plasma membrane|cytosol|endoplasmic reticulum membrane|immunological synapse|MPP7-DLG1-LIN7 complex|nucleus|postsynaptic density|postsynaptic membrane|sarcolemma|tight junction	cytoskeletal protein binding|guanylate kinase activity|L27 domain binding|phosphatase binding|phosphoprotein phosphatase activity|potassium channel regulator activity|protein binding|protein C-terminus binding|protein kinase binding			ovary(3)	3	all_cancers(143;6.22e-10)|Ovarian(172;0.0418)|Breast(254;0.0589)	Lung NSC(153;0.133)	Epithelial(36;3.23e-24)|all cancers(36;2.15e-22)|OV - Ovarian serous cystadenocarcinoma(49;3.88e-19)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(46;0.0148)		TGCCACCATTCATCATCAGAA	0.453000													70	106					0	0	1	0	0
KIAA0226	9711	broad.mit.edu	37	3	197404363	197404363	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:197404363C>T	uc003fyc.2	-	17	2663	c.2480G>A	c.(2479-2481)CGA>CAA	p.R827Q	KIAA0226_uc003fyd.3_Missense_Mutation_p.R782Q|MIR922_hsa-mir-922|MI0005714_5'Flank|KIAA0226_uc003fye.1_Missense_Mutation_p.R559Q	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	827					autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		CTTGGCCAGTCGGCAAGTCTT	0.547000													21	75					0	0	1	0	0
KIAA0226	9711	broad.mit.edu	37	3	197422750	197422750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:197422750G>A	uc003fyc.2	-	9	1643	c.1460C>T	c.(1459-1461)GCC>GTC	p.A487V	KIAA0226_uc003fyd.3_Missense_Mutation_p.A442V|KIAA0226_uc003fye.1_Missense_Mutation_p.A194V|KIAA0226_uc003fyf.2_Missense_Mutation_p.A335V	NM_014687	NP_055502	Q92622	RUBIC_HUMAN	hypothetical protein LOC9711 isoform 2.	487					autophagy|endocytosis|negative regulation of autophagy|negative regulation of endocytosis	early endosome|late endosome|lysosome	protein binding				0	all_cancers(143;8.26e-10)|Ovarian(172;0.0418)|Breast(254;0.0976)		Epithelial(36;2.19e-23)|all cancers(36;1.39e-21)|OV - Ovarian serous cystadenocarcinoma(49;1.21e-18)|LUSC - Lung squamous cell carcinoma(58;1.51e-06)|Lung(62;1.95e-06)	GBM - Glioblastoma multiforme(93;0.0446)		TTCCAGGTCGGCACAGCTGCC	0.537000													35	111					0	0	1	0	0
LMLN	89782	broad.mit.edu	37	3	197687095	197687095	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr3:197687095G>A	uc011buo.1	+	1	25	c.3G>A	c.(1-3)ATG>ATA	p.M1I	IQCG_uc003fyp.2_5'Flank|LMLN_uc003fyt.2_5'UTR|LMLN_uc010iar.2_Missense_Mutation_p.M1I|LMLN_uc010ias.2_5'UTR|LMLN_uc003fyu.2_5'UTR	NM_033029	NP_149018	Q96KR4	LMLN_HUMAN	leishmanolysin-like isoform 2	1					cell adhesion|cell division|mitosis|proteolysis	cytoplasm|membrane	metalloendopeptidase activity|zinc ion binding			skin(1)	1	all_cancers(143;1.15e-09)|Ovarian(172;0.0418)|Breast(254;0.0976)	Lung NSC(153;0.132)	Epithelial(36;9.84e-24)|all cancers(36;3.18e-22)|OV - Ovarian serous cystadenocarcinoma(49;5.35e-19)|LUSC - Lung squamous cell carcinoma(58;6.94e-07)|Lung(62;9.92e-07)	GBM - Glioblastoma multiforme(93;0.111)		CGCACTCCATGGTAACGACGC	0.627000													6	29					0	0	1	0	0
POLN	353497	broad.mit.edu	37	4	2074697	2074697	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:2074697G>A	uc003ger.2	-	23	2515	c.2515C>T	c.(2515-2517)CAG>TAG	p.Q839*	POLN_uc010icg.1_Intron	NM_181808	NP_861524	Q7Z5Q5	DPOLN_HUMAN	DNA-directed DNA polymerase nu	839					DNA repair|DNA replication	nucleus	DNA binding|DNA-directed DNA polymerase activity			kidney(2)|ovary(1)|skin(1)	4			OV - Ovarian serous cystadenocarcinoma(23;0.0955)			CCCCTCACCTGAAGCTGCAGC	0.637000								DNA_polymerases_(catalytic_subunits)|Direct_reversal_of_damage					79	69					0	0	1	0	0
SORCS2	57537	broad.mit.edu	37	4	7736084	7736085	+	Missense_Mutation	DNP	CC	TT	TT			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:7736084_7736085CC>TT	uc003gkb.3	+	25	3294_3295	c.3294_3295CC>TT	c.(3292-3297)ATCCTC>ATTTTC	p.L1099F	SORCS2_uc011bwi.1_Missense_Mutation_p.L927F	NM_020777	NP_065828	Q96PQ0	SORC2_HUMAN	VPS10 domain receptor protein SORCS 2 precursor	1099	Helical; (Potential).					integral to membrane	neuropeptide receptor activity			ovary(1)|central_nervous_system(1)	2						GAGCCTTCATCCTCTACAAGTT	0.629000													11	10					0	0	1	0	0
CPZ	8532	broad.mit.edu	37	4	8620237	8620237	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:8620237C>T	uc003glm.2	+	10	1711	c.1585C>T	c.(1585-1587)CGC>TGC	p.R529C	CPZ_uc003gll.2_RNA|CPZ_uc003gln.2_Missense_Mutation_p.R392C|CPZ_uc003glo.2_Missense_Mutation_p.R518C|CPZ_uc003glp.2_RNA	NM_001014447	NP_001014447	Q66K79	CBPZ_HUMAN	carboxypeptidase Z isoform 1	529					proteolysis|Wnt receptor signaling pathway	proteinaceous extracellular matrix	metallocarboxypeptidase activity|zinc ion binding			ovary(2)|pancreas(1)	3						CAAAGGCATTCGCCACGACAT	0.597000													33	26					0	0	1	0	0
TBC1D1	23216	broad.mit.edu	37	4	38051434	38051434	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:38051434C>T	uc003gtb.2	+	11	2168	c.1825C>T	c.(1825-1827)CAA>TAA	p.Q609*	TBC1D1_uc011byd.1_Nonsense_Mutation_p.Q609*|TBC1D1_uc010ifd.2_Nonsense_Mutation_p.Q356*|TBC1D1_uc011byf.1_Nonsense_Mutation_p.Q480*	NM_015173	NP_055988	Q86TI0	TBCD1_HUMAN	TBC1 (tre-2/USP6, BUB2, cdc16) domain family,	609						nucleus	Rab GTPase activator activity			ovary(1)	1						GGAACCTCCACAACCTGCCCG	0.557000													72	72					0	0	1	0	0
WDR19	57728	broad.mit.edu	37	4	39191380	39191380	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:39191380G>A	uc003gtv.2	+	4	423	c.269G>A	c.(268-270)AGC>AAC	p.S90N	WDR19_uc010ifl.1_5'UTR|WDR19_uc003gtu.1_Missense_Mutation_p.S90N|WDR19_uc011byi.1_5'UTR	NM_025132	NP_079408	Q8NEZ3	WDR19_HUMAN	WD repeat domain 19	90	WD 2.				cell projection organization	microtubule basal body|motile cilium|photoreceptor connecting cilium	binding			large_intestine(1)	1						AATAAGACCAGCCAGTTAGAC	0.363000													25	40					0	0	1	0	0
PDCL2	132954	broad.mit.edu	37	4	56448367	56448367	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:56448367C>T	uc003hbb.2	-	2	147	c.44G>A	c.(43-45)AGA>AAA	p.R15K		NM_152401	NP_689614	Q8N4E4	PDCL2_HUMAN	phosducin-like 2	15											0	Lung NSC(11;0.00256)|Glioma(25;0.08)|all_epithelial(27;0.0863)|all_neural(26;0.101)		LUSC - Lung squamous cell carcinoma(4;1.69e-07)|Lung(4;1.03e-06)|Epithelial(7;0.00669)			GCCGAAATCTCTTAAAATGTC	0.318000													10	58					0	0	1	0	0
EXOC1	55763	broad.mit.edu	37	4	56765977	56765977	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:56765977C>T	uc003hbe.1	+	17	2422	c.2264C>T	c.(2263-2265)GCC>GTC	p.A755V	EXOC1_uc003hbf.1_Missense_Mutation_p.A755V|EXOC1_uc003hbg.1_Missense_Mutation_p.A740V	NM_018261	NP_060731	Q9NV70	EXOC1_HUMAN	exocyst complex component 1 isoform 1	755					exocytosis|protein transport	exocyst	protein binding			ovary(2)|skin(2)|lung(1)|central_nervous_system(1)	6	Glioma(25;0.08)|all_neural(26;0.101)					AAAAAAGAAGCCAAACAAAAA	0.323000													59	46					0	0	1	0	0
UGT2B7	7364	broad.mit.edu	37	4	69962508	69962508	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:69962508C>T	uc003heg.3	+	1	316	c.270C>T	c.(268-270)ATC>ATT	p.I90I	UGT2B7_uc010ihq.2_Silent_p.I90I	NM_001074	NP_001065	P16662	UD2B7_HUMAN	UDP glucuronosyltransferase 2B7 precursor	90					lipid metabolic process	endoplasmic reticulum membrane|integral to membrane|microsome	glucuronosyltransferase activity			ovary(1)|skin(1)	2						AGAATTTCATCATGCAACAGA	0.333000													7	80					0	0	1	0	0
AFM	173	broad.mit.edu	37	4	74354372	74354372	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:74354372T>A	uc003hhb.2	+	7	770	c.739T>A	c.(739-741)TTC>ATC	p.F247I		NM_001133	NP_001124	P43652	AFAM_HUMAN	afamin precursor	247	Albumin 2.				vitamin transport		vitamin E binding			ovary(2)|central_nervous_system(1)	3	Breast(15;0.00102)		Epithelial(6;5.69e-05)|OV - Ovarian serous cystadenocarcinoma(6;0.000324)|all cancers(17;0.000555)|Lung(101;0.103)|LUSC - Lung squamous cell carcinoma(112;0.154)			CAGTCAAAAATTCCCCAAGAT	0.363000													22	45					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79351571	79351571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:79351571G>A	uc003hlb.2	+	37	5409	c.4969G>A	c.(4969-4971)GGT>AGT	p.G1657S	FRAS1_uc003hkw.2_Missense_Mutation_p.G1657S|FRAS1_uc010ijj.1_Missense_Mutation_p.G77S	NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	1656	CSPG 5.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						GATGGCCACAGGTAGCTACAC	0.493000													5	18					0	0	1	0	0
FRAS1	80144	broad.mit.edu	37	4	79403083	79403083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:79403083C>T	uc003hlb.2	+	57	9009	c.8569C>T	c.(8569-8571)CGG>TGG	p.R2857W		NM_025074	NP_079350	Q86XX4	FRAS1_HUMAN	Fraser syndrome 1	2852	Calx-beta 3.|Extracellular (Potential).				cell communication	integral to membrane|plasma membrane	metal ion binding			large_intestine(5)	5						TCCCAGCTCTCGGAAGGTGGA	0.522000													21	64					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80328643	80328643	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:80328643C>T	uc003hlu.2	-	1	730	c.712G>A	c.(712-714)GAG>AAG	p.E238K		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	238				E -> G (in Ref. 2; BAF84930).	glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						CCATAGATCTCAGAAGAACTG	0.413000													11	51					0	0	1	0	0
GK2	2712	broad.mit.edu	37	4	80329207	80329207	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:80329207C>T	uc003hlu.2	-	1	166	c.148G>A	c.(148-150)GAA>AAA	p.E50K		NM_033214	NP_149991	Q14410	GLPK2_HUMAN	glycerol kinase 2	50					glycerol-3-phosphate metabolic process	mitochondrial outer membrane	ATP binding|glycerol kinase activity			ovary(2)|skin(2)	4						ACCCATCCTTCTTTTGGGAAC	0.418000													18	85					0	0	1	0	0
BMP3	651	broad.mit.edu	37	4	81967015	81967015	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:81967015C>T	uc003hmg.3	+	2	760	c.440C>T	c.(439-441)CCA>CTA	p.P147L		NM_001201	NP_001192	P12645	BMP3_HUMAN	bone morphogenetic protein 3 preproprotein	147					cartilage development|cell differentiation|cell-cell signaling|growth|ossification	extracellular space	BMP receptor binding|cytokine activity|growth factor activity			ovary(4)|central_nervous_system(1)	5						CTGAGTTGTCCAGTGTCTGGA	0.428000													10	59					0	0	1	0	0
KLHL8	57563	broad.mit.edu	37	4	88091750	88091750	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:88091750G>A	uc011cdb.1	-	7	1611	c.1226C>T	c.(1225-1227)GCT>GTT	p.A409V	KLHL8_uc003hql.1_Missense_Mutation_p.A409V|KLHL8_uc003hqm.1_Missense_Mutation_p.A333V|KLHL8_uc003hqn.1_Missense_Mutation_p.A226V|KLHL8_uc010ikj.1_Missense_Mutation_p.A58V	NM_020803	NP_065854	Q9P2G9	KLHL8_HUMAN	kelch-like 8	409	Kelch 2.										0		Hepatocellular(203;0.114)|all_hematologic(202;0.21)|Acute lymphoblastic leukemia(40;0.242)		OV - Ovarian serous cystadenocarcinoma(123;0.000603)		TCCTAAGGAAGCCAAGGCAAT	0.368000													13	52					0	0	1	0	0
HERC5	51191	broad.mit.edu	37	4	89381275	89381275	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:89381275T>A	uc003hrt.2	+	3	572	c.419T>A	c.(418-420)ATA>AAA	p.I140K		NM_016323	NP_057407	Q9UII4	HERC5_HUMAN	hect domain and RLD 5	140	RCC1 1.				innate immune response|ISG15-protein conjugation|negative regulation of type I interferon production|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|regulation of cyclin-dependent protein kinase activity|regulation of defense response to virus|response to virus	cytosol|perinuclear region of cytoplasm	ISG15 ligase activity|protein binding|ubiquitin-protein ligase activity			ovary(4)|lung(3)|skin(2)	9		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;0.000209)		GAAAAAAAAATAATTCAGATC	0.279000													6	19					0	0	1	0	0
GRID2	2895	broad.mit.edu	37	4	94031972	94031972	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:94031972A>T	uc011cdt.1	+	4	861	c.603A>T	c.(601-603)GAA>GAT	p.E201D	GRID2_uc010ikx.2_Missense_Mutation_p.E201D|GRID2_uc011cdu.1_Missense_Mutation_p.E106D|GRID2_uc011cdv.1_RNA	NM_001510	NP_001501	O43424	GRID2_HUMAN	glutamate receptor, ionotropic, delta 2	201	Extracellular (Potential).				glutamate signaling pathway	cell junction|integral to plasma membrane|outer membrane-bounded periplasmic space|postsynaptic membrane	extracellular-glutamate-gated ion channel activity|ionotropic glutamate receptor activity			ovary(3)|skin(2)|large_intestine(1)	6		Hepatocellular(203;0.114)|all_hematologic(202;0.177)		OV - Ovarian serous cystadenocarcinoma(123;3.22e-06)|LUSC - Lung squamous cell carcinoma(81;0.185)|Lung(65;0.191)	L-Glutamic Acid(DB00142)	AGAAGGTAGAAAACAACATCA	0.408000													25	89					0	0	1	0	0
PDHA2	5161	broad.mit.edu	37	4	96762413	96762413	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:96762413C>T	uc003htr.3	+	1	1175	c.1112C>T	c.(1111-1113)TCA>TTA	p.S371L		NM_005390	NP_005381	P29803	ODPAT_HUMAN	pyruvate dehydrogenase E1 alpha 2 precursor	371					glycolysis	mitochondrial matrix	pyruvate dehydrogenase (acetyl-transferring) activity			central_nervous_system(1)	1		Hepatocellular(203;0.114)		OV - Ovarian serous cystadenocarcinoma(123;1.23e-06)	NADH(DB00157)	AGCAGTGATTCATCTTTTGAA	0.433000													22	82					0	0	1	0	0
C4orf17	84103	broad.mit.edu	37	4	100463203	100463203	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:100463203G>A	uc003huw.2	+	9	1340	c.1017G>A	c.(1015-1017)AGG>AGA	p.R339R	C4orf17_uc003hux.2_RNA	NM_032149	NP_115525	Q53FE4	CD017_HUMAN	hypothetical protein LOC84103	339											0				OV - Ovarian serous cystadenocarcinoma(123;2.08e-08)		TGTCAGCAAGGAGTATACAAG	0.418000													15	62					0	0	1	0	0
DDIT4L	115265	broad.mit.edu	37	4	101108909	101108909	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:101108909G>A	uc003hvq.2	-	3	710	c.507C>T	c.(505-507)ATC>ATT	p.I169I		NM_145244	NP_660287	Q96D03	DDT4L_HUMAN	DNA-damage-inducible transcript 4-like	169					negative regulation of signal transduction	cytoplasm				ovary(1)	1				OV - Ovarian serous cystadenocarcinoma(123;5.75e-09)		CTGAGCTGAGGATCAGAGTTC	0.388000													13	33					0	0	1	0	0
EEF1A1P9	441032	broad.mit.edu	37	4	106406047	106406047	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:106406047C>A	uc003hxt.1	+	1	185	c.55C>A	c.(55-57)CGT>AGT	p.R19S		NR_003586				SubName: Full=Eukaryotic translation elongation factor 1 alpha; Flags: Fragment;												0						GAAAGCTGAGCGTGAACATGG	0.443000													3	88					0.184627	0.18484	1	1	0
ENPEP	2028	broad.mit.edu	37	4	111482704	111482704	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:111482704A>G	uc003iab.3	+	20	3206	c.2864A>G	c.(2863-2865)GAG>GGG	p.E955G		NM_001977	NP_001968	Q07075	AMPE_HUMAN	glutamyl aminopeptidase	955	Extracellular (Potential).				cell migration|cell proliferation|cell-cell signaling|proteolysis	integral to plasma membrane	aminopeptidase activity|metalloexopeptidase activity|zinc ion binding			skin(3)|ovary(1)|breast(1)	5		Hepatocellular(203;0.217)		OV - Ovarian serous cystadenocarcinoma(123;0.0031)	L-Glutamic Acid(DB00142)	AATTTACTTGAGAGTGGTTAA	0.348000													8	13					0	0	1	0	0
NDST4	64579	broad.mit.edu	37	4	115760582	115760582	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:115760582C>T	uc003ibu.2	-	11	2917	c.2238G>A	c.(2236-2238)TGG>TGA	p.W746*	NDST4_uc010imw.2_RNA	NM_022569	NP_072091	Q9H3R1	NDST4_HUMAN	heparan sulfate N-deacetylase/N-sulfotransferase	746	Lumenal (Potential).|Heparan sulfate N-sulfotransferase 4.					Golgi membrane|integral to membrane	[heparan sulfate]-glucosamine N-sulfotransferase activity|hydrolase activity			skin(3)|ovary(1)	4		Ovarian(17;0.156)		OV - Ovarian serous cystadenocarcinoma(123;0.000562)		GGACTGCATACCATCCAGGTA	0.373000													27	104					0	0	1	0	0
C4orf31	79625	broad.mit.edu	37	4	121958804	121958804	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:121958804C>T	uc003idq.1	-	4	849	c.322G>A	c.(322-324)GAA>AAA	p.E108K		NM_024574	NP_078850	Q8TB73	CD031_HUMAN	hypothetical protein LOC79625 precursor	108											0						TCAAGAGGTTCCAGATCACCT	0.413000													10	36					0	0	1	0	0
TNIP3	79931	broad.mit.edu	37	4	122068286	122068286	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:122068286C>T	uc010ing.2	-	7	849	c.653G>A	c.(652-654)CGA>CAA	p.R218Q	TNIP3_uc010inh.2_Missense_Mutation_p.R218Q|TNIP3_uc011cgj.1_Missense_Mutation_p.R276Q	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	218	Potential.									ovary(1)	1						AAGTCTCTCTCGATCCGATCG	0.373000													19	54					0	0	1	0	0
TNIP3	79931	broad.mit.edu	37	4	122085217	122085217	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:122085217C>T	uc010ing.2	-	1	260	c.64G>A	c.(64-66)GAG>AAG	p.E22K	TNIP3_uc010inh.2_Missense_Mutation_p.E22K|TNIP3_uc011cgj.1_Missense_Mutation_p.E80K|TNIP3_uc010ini.2_Missense_Mutation_p.E22K	NM_024873	NP_079149	Q96KP6	TNIP3_HUMAN	TNFAIP3 interacting protein 3	22										ovary(1)	1						GTTCTTACCTCTTTATGCTCC	0.393000													12	58					0	0	1	0	0
PCDH18	54510	broad.mit.edu	37	4	138449716	138449716	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:138449716C>T	uc003ihe.3	-	3	3043	c.2656G>A	c.(2656-2658)GAT>AAT	p.D886N	PCDH18_uc003ihf.3_Missense_Mutation_p.D878N|PCDH18_uc011cgz.1_Missense_Mutation_p.D97N|PCDH18_uc003ihg.3_Missense_Mutation_p.D665N|PCDH18_uc011cha.1_Missense_Mutation_p.D66N	NM_019035	NP_061908	Q9HCL0	PCD18_HUMAN	protocadherin 18 precursor	886	Cytoplasmic (Potential).				brain development|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding			pancreas(3)|skin(2)	5	all_hematologic(180;0.24)					CGCCCCAAATCATAATCACTG	0.448000													64	262					0	0	1	0	0
ZNF827	152485	broad.mit.edu	37	4	146700595	146700595	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:146700595G>A	uc003ikn.2	-	9	2500	c.2452C>T	c.(2452-2454)CCC>TCC	p.P818S	ZNF827_uc003ikm.2_Missense_Mutation_p.P818S|ZNF827_uc010iox.2_Missense_Mutation_p.P468S|ZNF827_uc003ikl.2_5'UTR	NM_178835	NP_849157	Q17R98	ZN827_HUMAN	zinc finger protein 827	818	C2H2-type 4.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding				0	all_hematologic(180;0.151)					ACGTCACAGGGAAAAAGCTGG	0.493000													19	50					0	0	1	0	0
PRMT10	90826	broad.mit.edu	37	4	148594831	148594831	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:148594831G>A	uc003ilc.2	-	3	675	c.533C>T	c.(532-534)TCC>TTC	p.S178F	PRMT10_uc003ild.2_Missense_Mutation_p.S65F	NM_138364	NP_612373	Q6P2P2	ANM10_HUMAN	protein arginine methyltransferase 10	178						cytoplasm	binding|protein methyltransferase activity			ovary(1)|central_nervous_system(1)	2						AACACTTTTGGACCCCAAACA	0.363000													12	49					0	0	1	0	0
TMEM144	55314	broad.mit.edu	37	4	159174647	159174647	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:159174647G>A	uc003ipx.2	+	13	1526	c.1006G>A	c.(1006-1008)GGA>AGA	p.G336R	TMEM144_uc010iqi.2_RNA	NM_018342	NP_060812	Q7Z5S9	TM144_HUMAN	transmembrane protein 144	336	Helical; (Potential).					integral to membrane					0	all_hematologic(180;0.24)	Renal(120;0.0854)		COAD - Colon adenocarcinoma(41;0.0539)		CATCTTGACTGGAGCCTTATG	0.383000													18	60					0	0	1	0	0
NPY1R	4886	broad.mit.edu	37	4	164246531	164246531	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:164246531G>A	uc003iqm.1	-	3	1345	c.1079C>T	c.(1078-1080)TCC>TTC	p.S360F	NPY1R_uc011cjj.1_Missense_Mutation_p.S117F	NM_000909	NP_000900	P25929	NPY1R_HUMAN	neuropeptide Y receptor Y1	360	Cytoplasmic (Potential).				inhibition of adenylate cyclase activity by G-protein signaling pathway|outflow tract morphogenesis	integral to plasma membrane	protein binding			lung(1)|pancreas(1)	2	all_hematologic(180;0.166)	Prostate(90;0.0959)|all_neural(102;0.223)				AGAAGTTTTGGAAACATCTGT	0.388000													39	100					0	0	1	0	0
DDX60L	91351	broad.mit.edu	37	4	169279309	169279309	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:169279309G>A	uc003irq.3	-	38	5331	c.5110C>T	c.(5110-5112)CAT>TAT	p.H1704Y		NM_001012967	NP_001012985	Q5H9U9	DDX6L_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60-like	1704							ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1		Prostate(90;0.00876)|Renal(120;0.0183)|all_neural(102;0.0837)|Melanoma(52;0.132)		GBM - Glioblastoma multiforme(119;0.175)		TATTCTAAATGATTTTGACTC	0.294000													15	47					0	0	1	0	0
MORF4	10934	broad.mit.edu	37	4	174537506	174537506	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:174537506G>A	uc011cke.1	-	1	289	c.289C>T	c.(289-291)CCT>TCT	p.P97S		NM_006792	NP_006783			mortality factor 4												0		Prostate(90;0.00201)|Renal(120;0.0183)|Melanoma(52;0.0749)|all_neural(102;0.0765)|all_hematologic(60;0.107)		all cancers(43;1.88e-18)|Epithelial(43;1.19e-16)|OV - Ovarian serous cystadenocarcinoma(60;1.38e-09)|STAD - Stomach adenocarcinoma(60;0.00273)|GBM - Glioblastoma multiforme(59;0.0064)|LUSC - Lung squamous cell carcinoma(193;0.0903)|Kidney(143;0.249)		TTCTCGGCAGGAAGATAGAAG	0.378000													37	120					0	0	1	0	0
ADAM29	11086	broad.mit.edu	37	4	175896704	175896704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:175896704C>T	uc003iuc.2	+	5	698	c.28C>T	c.(28-30)CTT>TTT	p.L10F	ADAM29_uc003iud.2_Missense_Mutation_p.L10F|ADAM29_uc010irr.2_Missense_Mutation_p.L10F|ADAM29_uc011cki.1_Missense_Mutation_p.L10F	NM_014269	NP_055084	Q9UKF5	ADA29_HUMAN	ADAM metallopeptidase domain 29 preproprotein	10					proteolysis|spermatogenesis	integral to plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(5)|central_nervous_system(3)|ovary(3)|large_intestine(2)|lung(2)|pancreas(1)	16		Breast(14;0.00908)|Melanoma(52;0.00951)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;3.08e-19)|Epithelial(43;6.24e-18)|OV - Ovarian serous cystadenocarcinoma(60;1.78e-09)|STAD - Stomach adenocarcinoma(60;0.00303)|GBM - Glioblastoma multiforme(59;0.0106)|LUSC - Lung squamous cell carcinoma(193;0.0286)		GCTGCATTGCCTTGGGGTGTT	0.488000													18	96					0	0	1	0	0
WDR17	116966	broad.mit.edu	37	4	177056375	177056375	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:177056375G>A	uc003iuj.2	+	9	1443	c.1287G>A	c.(1285-1287)GTG>GTA	p.V429V	WDR17_uc003iuk.2_Silent_p.V405V|WDR17_uc003ium.3_Silent_p.V405V|WDR17_uc003iul.1_Intron	NM_170710	NP_733828	Q8IZU2	WDR17_HUMAN	WD repeat domain 17 isoform 1	429	WD 6.									ovary(2)|skin(2)|pancreas(1)|central_nervous_system(1)	6		Breast(14;0.00015)|Melanoma(52;0.00886)|Prostate(90;0.00996)|Renal(120;0.0183)|all_hematologic(60;0.107)|all_neural(102;0.164)		all cancers(43;2.21e-20)|Epithelial(43;9.71e-18)|OV - Ovarian serous cystadenocarcinoma(60;2.38e-09)|GBM - Glioblastoma multiforme(59;0.000295)|STAD - Stomach adenocarcinoma(60;0.000703)|LUSC - Lung squamous cell carcinoma(193;0.0232)		TAACAGCAGTGTACACATCCC	0.358000													26	88					0	0	1	0	0
ODZ3	55714	broad.mit.edu	37	4	183657973	183657973	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:183657973G>A	uc003ivd.1	+	16	3017	c.2980G>A	c.(2980-2982)GAA>AAA	p.E994K	ODZ3_uc003ive.1_Missense_Mutation_p.E400K	NM_001080477	NP_001073946	Q9P273	TEN3_HUMAN	odz, odd Oz/ten-m homolog 3	994	Extracellular (Potential).				signal transduction	integral to membrane					0		all_lung(41;2.69e-14)|Lung NSC(41;1.92e-11)|Melanoma(52;1.74e-05)|Colorectal(36;0.0062)|Breast(14;0.00748)|all_hematologic(60;0.0162)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_neural(102;0.155)|Medulloblastoma(177;0.184)		all cancers(43;1.42e-24)|Epithelial(43;6.86e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.16e-11)|Colorectal(24;9.75e-06)|STAD - Stomach adenocarcinoma(60;2.96e-05)|COAD - Colon adenocarcinoma(29;0.00103)|GBM - Glioblastoma multiforme(59;0.00462)|LUSC - Lung squamous cell carcinoma(40;0.0391)|READ - Rectum adenocarcinoma(43;0.0487)		ACTCCACGAGGAAACTACAAT	0.363000													4	9					0	0	1	0	0
HELT	391723	broad.mit.edu	37	4	185940832	185940832	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr4:185940832C>T	uc011ckq.1	+	3	319	c.319C>T	c.(319-321)CTC>TTC	p.L107F	HELT_uc011cko.1_Intron|HELT_uc003ixa.3_Intron|HELT_uc011ckp.1_5'UTR	NM_001029887	NP_001025058	A6NFD8	HELT_HUMAN	HES/HEY-like transcription factor	107	Helix-loop-helix motif.						DNA binding				0		all_lung(41;9.65e-12)|Lung NSC(41;1.64e-11)|Colorectal(36;0.0215)|Renal(120;0.0246)|Hepatocellular(41;0.0268)|Prostate(90;0.0283)|all_hematologic(60;0.0749)		all cancers(43;8.92e-26)|Epithelial(43;3.02e-23)|OV - Ovarian serous cystadenocarcinoma(60;2.59e-11)|Colorectal(24;4.79e-05)|BRCA - Breast invasive adenocarcinoma(30;7.72e-05)|GBM - Glioblastoma multiforme(59;0.000274)|COAD - Colon adenocarcinoma(29;0.000362)|STAD - Stomach adenocarcinoma(60;0.000756)|LUSC - Lung squamous cell carcinoma(40;0.00902)|READ - Rectum adenocarcinoma(43;0.155)		CTCGCTGGTCCTCTCCAGCGC	0.706000													4	12					0	0	1	0	0
KIAA0947	23379	broad.mit.edu	37	5	5463358	5463358	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:5463358C>T	uc003jdm.3	+	13	4133	c.3911C>T	c.(3910-3912)CCA>CTA	p.P1304L		NM_015325	NP_056140	Q9Y2F5	K0947_HUMAN	hypothetical protein LOC23379	1304										ovary(1)|central_nervous_system(1)	2						GAGAAAAGTCCATTTCGGGAA	0.438000													11	11					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13817805	13817805	+	Splice_Site	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:13817805T>G	uc003jfd.2	-	42	6884	c.6842_splice	c.e42-1	p.D2281_splice		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5						microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					TTCCACAATCTATACCAAGTA	0.438000									Kartagener_syndrome				36	38					0	0	1	0	0
DNAH5	1767	broad.mit.edu	37	5	13839481	13839481	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:13839481T>G	uc003jfd.2	-	35	5908	c.5866A>C	c.(5866-5868)ACT>CCT	p.T1956P		NM_001369	NP_001360	Q8TE73	DYH5_HUMAN	dynein, axonemal, heavy chain 5	1956	AAA 1 (By similarity).				microtubule-based movement	cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(14)|skin(13)|upper_aerodigestive_tract(1)|central_nervous_system(1)|breast(1)|pancreas(1)	31	Lung NSC(4;0.00476)					GTAAGTGGAGTTATTACAAGC	0.418000									Kartagener_syndrome				47	52					0	0	1	0	0
CDH10	1008	broad.mit.edu	37	5	24488226	24488226	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:24488226C>T	uc003jgr.1	-	12	2245	c.1913G>A	c.(1912-1914)CGA>CAA	p.R638Q	CDH10_uc011cnu.1_RNA	NM_006727	NP_006718	Q9Y6N8	CAD10_HUMAN	cadherin 10, type 2 preproprotein	638	Cytoplasmic (Potential).				adherens junction organization|cell junction assembly|homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding	p.R638Q(1)		ovary(6)|pancreas(4)|breast(2)	12				STAD - Stomach adenocarcinoma(35;0.0556)		CTCTTTTTTTCGCTGTCTTTT	0.398000										HNSCC(23;0.051)			11	14					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32074126	32074126	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:32074126G>A	uc003jhl.2	+	18	3302	c.2914G>A	c.(2914-2916)GAT>AAT	p.D972N	PDZD2_uc003jhm.2_Missense_Mutation_p.D972N|PDZD2_uc011cnx.1_Missense_Mutation_p.D798N	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	972					cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CGATGCCAGTGATGAGGAAGA	0.612000													29	29					0	0	1	0	0
PDZD2	23037	broad.mit.edu	37	5	32101292	32101292	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:32101292G>A	uc003jhl.2	+	24	8688	c.8300G>A	c.(8299-8301)GGA>GAA	p.G2767E	PDZD2_uc003jhm.2_Missense_Mutation_p.G2767E|PDZD2_uc003jhn.2_RNA	NM_178140	NP_835260	O15018	PDZD2_HUMAN	PDZ domain containing 2	2767	PDZ 6.				cell adhesion	cell-cell junction|endoplasmic reticulum|extracellular region|nucleus				central_nervous_system(4)|ovary(2)|skin(2)|large_intestine(1)	9						CTGGATGGGGGAAAATCATCG	0.522000													58	49					0	0	1	0	0
NIPBL	25836	broad.mit.edu	37	5	37064712	37064712	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:37064712C>T	uc003jkl.3	+	47	8632	c.8133C>T	c.(8131-8133)ATC>ATT	p.I2711I	NIPBL_uc003jkk.3_3'UTR|NIPBL_uc003jkn.2_3'UTR	NM_133433	NP_597677	Q6KC79	NIPBL_HUMAN	delangin isoform A	2711					brain development|cellular protein localization|cellular response to X-ray|cognition|developmental growth|ear morphogenesis|embryonic arm morphogenesis|embryonic digestive tract morphogenesis|external genitalia morphogenesis|eye morphogenesis|face morphogenesis|gall bladder development|maintenance of mitotic sister chromatid cohesion|metanephros development|negative regulation of transcription from RNA polymerase II promoter|outflow tract morphogenesis|positive regulation of histone deacetylation|regulation of developmental growth|regulation of embryonic development|regulation of hair cycle|response to DNA damage stimulus|sensory perception of sound|uterus morphogenesis	SMC loading complex	chromo shadow domain binding|histone deacetylase binding|protein C-terminus binding|protein N-terminus binding			ovary(4)|lung(2)|large_intestine(1)|breast(1)|kidney(1)	9	all_lung(31;0.000447)|Hepatocellular(1;0.108)		Epithelial(62;0.072)|COAD - Colon adenocarcinoma(61;0.14)|all cancers(62;0.191)|Colorectal(62;0.202)			TGGATGTCATCGCTATTTGCT	0.453000													36	122					0	0	1	0	0
RICTOR	253260	broad.mit.edu	37	5	38950648	38950648	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:38950648G>A	uc003jlp.2	-	31	3326	c.3302C>T	c.(3301-3303)TCG>TTG	p.S1101L	RICTOR_uc003jlo.2_Missense_Mutation_p.S1101L|RICTOR_uc010ivf.2_Missense_Mutation_p.S816L	NM_152756	NP_689969	Q6R327	RICTR_HUMAN	rapamycin-insensitive companion of mTOR	1101					actin cytoskeleton reorganization|embryo development|nerve growth factor receptor signaling pathway|phosphatidylinositol-mediated signaling|positive regulation of TOR signaling cascade|regulation of protein kinase B signaling cascade|T cell costimulation	cytosol|TORC2 complex	protein binding			ovary(3)|lung(3)|skin(2)|kidney(1)|central_nervous_system(1)	10	all_lung(31;0.000396)					CAAAGTAAGCGAATTTAAGAT	0.368000													25	57					0	0	1	0	0
MIER3	166968	broad.mit.edu	37	5	56242797	56242797	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:56242797C>T	uc003jrd.1	-	3	161	c.136G>A	c.(136-138)GAT>AAT	p.D46N	MIER3_uc003jra.1_Missense_Mutation_p.D46N|MIER3_uc003jrb.1_5'UTR|MIER3_uc003jrc.1_Missense_Mutation_p.D51N|MIER3_uc003jre.2_RNA|MIER3_uc003jrf.2_RNA|MIER3_uc003jrg.2_RNA	NM_152622	NP_689835	Q7Z3K6	MIER3_HUMAN	mesoderm induction early response 1, family	46					regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding				0		Lung NSC(810;4.65e-05)|Prostate(74;0.0253)|Breast(144;0.0503)|Ovarian(174;0.223)		OV - Ovarian serous cystadenocarcinoma(10;1.24e-37)		TTACCCTCATCCATCATTTCC	0.338000													12	15					0	0	1	0	0
MAST4	375449	broad.mit.edu	37	5	66459397	66459397	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:66459397C>T	uc003jut.1	+	28	3891	c.3823C>T	c.(3823-3825)CGC>TGC	p.R1275C	MAST4_uc003juw.2_Missense_Mutation_p.R1203C|MAST4_uc003jux.2_5'Flank	NM_015183	NP_055998	O15021	MAST4_HUMAN	microtubule associated serine/threonine kinase	1467						cytoplasm	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			lung(6)|ovary(2)|kidney(2)|breast(2)|central_nervous_system(1)	13		Lung NSC(167;8.56e-06)|Prostate(74;0.00637)|Ovarian(174;0.0563)|Breast(144;0.0586)|Colorectal(97;0.245)		Lung(70;0.011)		CCTGTGCTCCCGCAAGCACAG	0.667000													4	1					0	0	1	0	0
THBS4	7060	broad.mit.edu	37	5	79374011	79374011	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:79374011G>A	uc003kgh.2	+	18	2549	c.2226G>A	c.(2224-2226)GGG>GGA	p.G742G	uc003kgi.3_Intron	NM_003248	NP_003239	P35443	TSP4_HUMAN	thrombospondin 4 precursor	742	TSP C-terminal.				endothelial cell-cell adhesion|myoblast migration|negative regulation of angiogenesis|positive regulation of endothelial cell proliferation|positive regulation of neutrophil chemotaxis|positive regulation of peptidyl-tyrosine phosphorylation	basement membrane|extracellular space	calcium ion binding|heparin binding|integrin binding|structural molecule activity				0		Lung NSC(167;0.00328)|all_lung(232;0.00355)|Ovarian(174;0.0261)		OV - Ovarian serous cystadenocarcinoma(54;6.3e-45)|Epithelial(54;1.77e-39)|all cancers(79;3.2e-34)		ATCCTGAAGGGGATGCCCAGA	0.592000													9	17					0	0	1	0	0
MSH3	4437	broad.mit.edu	37	5	80171622	80171622	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:80171622C>T	uc003kgz.2	+	24	3608	c.3355C>T	c.(3355-3357)CTG>TTG	p.L1119L		NM_002439	NP_002430	P20585	MSH3_HUMAN	mutS homolog 3	1119					maintenance of DNA repeat elements|meiotic mismatch repair|negative regulation of DNA recombination|positive regulation of helicase activity|reciprocal meiotic recombination|somatic recombination of immunoglobulin gene segments	MutSbeta complex|nuclear chromosome	ATP binding|DNA-dependent ATPase activity|double-strand/single-strand DNA junction binding|enzyme binding|loop DNA binding|Y-form DNA binding			lung(2)|ovary(1)|breast(1)	4		Lung NSC(167;0.00479)|all_lung(232;0.00507)|Ovarian(174;0.0261)|Breast(144;0.244)		OV - Ovarian serous cystadenocarcinoma(54;2.38e-45)|Epithelial(54;1.58e-38)|all cancers(79;4.93e-33)		TGCACAAGACCTGCAGAAGTG	0.338000								MMR					25	30					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	89925337	89925337	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:89925337G>A	uc003kju.2	+	9	1916	c.1820G>A	c.(1819-1821)GGA>GAA	p.G607E	GPR98_uc003kjt.2_5'UTR	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	607	Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		cttcaaaatggagctcacttt	0.204000													18	24					0	0	1	0	0
GPR98	84059	broad.mit.edu	37	5	90046491	90046491	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:90046491G>A	uc003kju.2	+	53	11194	c.11098G>A	c.(11098-11100)GAT>AAT	p.D3700N	GPR98_uc003kjt.2_Missense_Mutation_p.D1406N|GPR98_uc003kjv.2_Missense_Mutation_p.D1300N	NM_032119	NP_115495	Q8WXG9	GPR98_HUMAN	G protein-coupled receptor 98 precursor	3700	Calx-beta 24.|Extracellular (Potential).				cell communication|cell-cell adhesion|maintenance of organ identity|neuropeptide signaling pathway|photoreceptor cell maintenance	cell surface|cytoplasm|integral to membrane|plasma membrane	calcium ion binding|G-protein coupled receptor activity			ovary(11)|central_nervous_system(3)|pancreas(2)	16		all_cancers(142;1.05e-09)|all_epithelial(76;1.81e-12)|all_lung(232;5.41e-06)|Lung NSC(167;1.72e-05)|Ovarian(174;0.00948)|Colorectal(57;0.133)|Breast(839;0.192)		OV - Ovarian serous cystadenocarcinoma(54;7.01e-30)|Epithelial(54;6.79e-25)|all cancers(79;1.88e-20)		AAGTATTAGTGATATATTTCC	0.373000													55	87					0	0	1	0	0
MCTP1	79772	broad.mit.edu	37	5	94278084	94278084	+	Silent	SNP	G	A	A	rs142378017		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:94278084G>A	uc003kkx.2	-	4	1029	c.1029C>T	c.(1027-1029)GCC>GCT	p.A343A	MCTP1_uc003kkv.2_Silent_p.A122A|MCTP1_uc003kkw.2_Silent_p.A122A|MCTP1_uc003kkz.2_Silent_p.A4A	NM_024717	NP_078993	Q6DN14	MCTP1_HUMAN	multiple C2 domains, transmembrane 1 isoform L	343	C2 1.				calcium-mediated signaling	integral to membrane|membrane fraction	calcium ion binding			ovary(2)	2		all_cancers(142;1.68e-05)|all_epithelial(76;1.51e-07)|all_lung(232;0.0167)|Lung NSC(167;0.0207)|Ovarian(225;0.0218)|Colorectal(57;0.207)		all cancers(79;9.1e-17)		GATCCAGAAAGGCTGAGCCCA	0.323000													29	31					0	0	1	0	0
PCSK1	5122	broad.mit.edu	37	5	95746538	95746538	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:95746538C>T	uc003kls.1	-	8	1241	c.1035G>A	c.(1033-1035)GAG>GAA	p.E345E	PCSK1_uc010jbi.1_Intron	NM_000439	NP_000430	P29120	NEC1_HUMAN	proprotein convertase subtilisin/kexin type 1	345	Catalytic.				cell-cell signaling|cellular nitrogen compound metabolic process|energy reserve metabolic process|hormone biosynthetic process|peptide biosynthetic process|peptide hormone processing|regulation of insulin secretion	extracellular space|stored secretory granule|transport vesicle	serine-type endopeptidase activity			ovary(2)	2		all_cancers(142;2.67e-06)|all_epithelial(76;6.92e-09)|all_lung(232;0.00307)|Lung NSC(167;0.00452)|Ovarian(225;0.0112)|Colorectal(57;0.0341)|Breast(839;0.244)		all cancers(79;3.44e-16)	Insulin Glargine recombinant(DB00047)|Insulin Lyspro recombinant(DB00046)|Insulin recombinant(DB00030)|Insulin, porcine(DB00071)	AGGAGCACTTCTCAGCGTACC	0.512000													95	148					0	0	1	0	0
SLC25A46	91137	broad.mit.edu	37	5	110097150	110097150	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:110097150A>G	uc003koz.2	+	8	992	c.925A>G	c.(925-927)ATG>GTG	p.M309V	SLC25A46_uc011cvi.1_Missense_Mutation_p.M218V	NM_138773	NP_620128	Q96AG3	S2546_HUMAN	solute carrier family 25, member 46	309					transport	integral to membrane|mitochondrial inner membrane					0		all_cancers(142;0.00203)|all_epithelial(76;4.52e-05)|Prostate(80;0.0115)|Colorectal(57;0.0676)|Ovarian(225;0.156)		OV - Ovarian serous cystadenocarcinoma(64;2.58e-09)|Epithelial(69;7.29e-08)|all cancers(49;9.35e-06)|COAD - Colon adenocarcinoma(37;0.211)		TGTGCAGAGTATGTTGGATGC	0.403000													139	121					0	0	1	0	0
DCP2	167227	broad.mit.edu	37	5	112343651	112343651	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:112343651G>A	uc003kqh.2	+	9	1157	c.959G>A	c.(958-960)GGA>GAA	p.G320E	DCP2_uc011cwa.1_Missense_Mutation_p.G109E|DCP2_uc010jcc.2_Intron	NM_152624	NP_689837	Q8IU60	DCP2_HUMAN	DCP2 decapping enzyme	320					exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay|histone mRNA catabolic process|nuclear-transcribed mRNA catabolic process, nonsense-mediated decay	cytoplasmic mRNA processing body|cytosol|nucleus|RNA-induced silencing complex	exoribonuclease activity, producing 5'-phosphomonoesters|manganese ion binding|protein binding|protein binding|RNA binding				0		all_cancers(142;4.41e-05)|all_epithelial(76;3.65e-07)|Colorectal(10;0.00115)|Prostate(80;0.00133)|Ovarian(225;0.0443)		OV - Ovarian serous cystadenocarcinoma(64;6.98e-08)|Epithelial(69;7.87e-08)|all cancers(49;1.06e-05)|COAD - Colon adenocarcinoma(37;0.0123)|Colorectal(14;0.0171)		AGTATGAGGGGAAATGGCAGA	0.328000													10	30					0	0	1	0	0
DDX46	9879	broad.mit.edu	37	5	134154640	134154640	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:134154640C>T	uc003kzw.2	+	21	3088	c.2920C>T	c.(2920-2922)CCT>TCT	p.P974S		NM_014829	NP_055644	Q7L014	DDX46_HUMAN	DEAD (Asp-Glu-Ala-Asp) box polypeptide 46	974					mRNA processing|RNA splicing	Cajal body|nuclear speck	ATP binding|ATP-dependent helicase activity|RNA binding			ovary(1)	1			KIRC - Kidney renal clear cell carcinoma(527;0.0101)|Kidney(363;0.0233)			AACCTACTTCCCTCCTGGCAA	0.413000													26	40					0	0	1	0	0
PCDHA5	56143	broad.mit.edu	37	5	140201389	140201389	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:140201389G>A	uc003lhl.2	+	1	29	c.29G>A	c.(28-30)GGA>GAA	p.G10E	PCDHA1_uc003lha.2_Intron|PCDHA1_uc003lhb.2_Intron|PCDHA2_uc003lhd.2_Intron|PCDHA3_uc003lhf.2_Intron|PCDHA4_uc003lhi.2_Intron|PCDHA4_uc003lhh.1_Intron|PCDHA5_uc003lhk.1_Missense_Mutation_p.G10E|PCDHA5_uc003lhj.1_Missense_Mutation_p.G10E	NM_018908	NP_061731	Q9Y5H7	PCDA5_HUMAN	protocadherin alpha 5 isoform 1 precursor	10					homophilic cell adhesion|nervous system development	integral to plasma membrane	calcium ion binding|protein binding			ovary(1)|breast(1)|skin(1)	3			KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)			GGAAGTCTGGGATCCCGGCTC	0.502000													31	52					0	0	1	0	0
PCDHB1	29930	broad.mit.edu	37	5	140431951	140431951	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:140431951G>A	uc003lik.1	+	1	973	c.896G>A	c.(895-897)GGA>GAA	p.G299E		NM_013340	NP_037472	Q9Y5F3	PCDB1_HUMAN	protocadherin beta 1 precursor	299	Cadherin 3.|Extracellular (Potential).				homophilic cell adhesion	integral to membrane|plasma membrane	calcium ion binding				0			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CCTCAAAATGGAGAAGTTCGA	0.468000													33	23					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140516600	140516600	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:140516600C>T	uc003liq.2	+	1	1801	c.1584C>T	c.(1582-1584)TTC>TTT	p.F528F		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	528	Extracellular (Potential).|Cadherin 5.				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			CGTTCGAGTTCCGCGTGGGAG	0.687000													37	30					0	0	1	0	0
PCDHB5	26167	broad.mit.edu	37	5	140517311	140517311	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:140517311C>T	uc003liq.2	+	1	2512	c.2295C>T	c.(2293-2295)TTC>TTT	p.F765F		NM_015669	NP_056484	Q9Y5E4	PCDB5_HUMAN	protocadherin beta 5 precursor	765	Cytoplasmic (Potential).				calcium-dependent cell-cell adhesion|homophilic cell adhesion|synapse assembly|synaptic transmission	integral to membrane|plasma membrane	calcium ion binding|protein binding			skin(3)|ovary(2)	5			KIRC - Kidney renal clear cell carcinoma(527;0.00185)|Kidney(363;0.00339)			AGTTCAAGTTCCTGAAGCCGA	0.542000													95	98					0	0	1	0	0
PCDH1	5097	broad.mit.edu	37	5	141243088	141243088	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:141243088G>A	uc003llq.2	-	3	2925	c.2808C>T	c.(2806-2808)TCC>TCT	p.S936S	PCDH1_uc003llp.2_Silent_p.S936S|PCDH1_uc011dbf.1_Silent_p.S914S	NM_002587	NP_002578	Q08174	PCDH1_HUMAN	protocadherin 1 isoform 1 precursor	936	Cytoplasmic (Potential).				cell-cell signaling|homophilic cell adhesion|nervous system development	cell-cell junction|integral to plasma membrane	calcium ion binding			ovary(5)	5		Lung NSC(810;0.027)|all_lung(500;0.0321)|all_hematologic(541;0.0433)|Prostate(461;0.0453)|Breast(839;0.128)|Lung SC(612;0.238)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)|Kidney(363;0.00191)	GBM - Glioblastoma multiforme(465;1.06e-05)		TGAACTTGAGGGACTTCTGCA	0.612000													5	13					0	0	1	0	0
KIF4B	285643	broad.mit.edu	37	5	154393918	154393918	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:154393918C>T	uc010jih.1	+	1	659	c.499C>T	c.(499-501)CCT>TCT	p.P167S		NM_001099293	NP_001092763	Q2VIQ3	KIF4B_HUMAN	kinesin family member 4B	167	Kinesin-motor.				axon guidance|blood coagulation|microtubule-based movement	cytosol|microtubule|nuclear matrix	ATP binding|DNA binding|microtubule motor activity			ovary(1)	1	Renal(175;0.00488)	Medulloblastoma(196;0.0523)	KIRC - Kidney renal clear cell carcinoma(527;0.00112)			ACGGGAGGATCCTAAGGAAGG	0.398000													39	118					0	0	1	0	0
GABRB2	2561	broad.mit.edu	37	5	160753437	160753437	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:160753437C>T	uc003lys.1	-	10	1347	c.1129G>A	c.(1129-1131)GAC>AAC	p.D377N	GABRB2_uc011deh.1_Intron|GABRB2_uc003lyr.1_Intron|GABRB2_uc003lyt.1_Intron|GABRB2_uc010jiu.1_Intron	NM_021911	NP_068711	P47870	GBRB2_HUMAN	gamma-aminobutyric acid (GABA) A receptor, beta	377	Cytoplasmic (Probable).				gamma-aminobutyric acid signaling pathway|synaptic transmission	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	chloride channel activity|GABA-A receptor activity				0	Renal(175;0.00259)	Medulloblastoma(196;0.021)|all_neural(177;0.0463)	Kidney(164;7.83e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000525)		Ethchlorvynol(DB00189)|Flurazepam(DB00690)|Lorazepam(DB00186)|Midazolam(DB00683)	ccagtagggtcccacaaggat	0.090000													40	38					0	0	1	0	0
DBN1	1627	broad.mit.edu	37	5	176886201	176886201	+	Missense_Mutation	SNP	T	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:176886201T>C	uc003mgy.2	-	11	1196	c.1024A>G	c.(1024-1026)AGC>GGC	p.S342G	DBN1_uc011dga.1_Missense_Mutation_p.S74G|DBN1_uc003mgx.2_Missense_Mutation_p.S344G|DBN1_uc010jkn.1_Missense_Mutation_p.S292G|DBN1_uc003mgz.1_Missense_Mutation_p.S325G	NM_004395	NP_004386	Q16643	DREB_HUMAN	drebrin 1 isoform a	342					actin filament organization|regulation of dendrite development|regulation of neuronal synaptic plasticity	actomyosin|cytoplasm|dendrite	actin binding|profilin binding			breast(3)|ovary(1)|lung(1)|skin(1)	6	all_cancers(89;2.17e-05)|Renal(175;0.000269)|Lung NSC(126;0.0014)|all_lung(126;0.0025)	all_neural(177;0.00409)|Medulloblastoma(196;0.00498)|all_hematologic(541;0.21)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)			GAGGCGGTGCTGGAGTCAGAC	0.687000													87	75					0	0	1	0	0
FAM193B	54540	broad.mit.edu	37	5	176963397	176963397	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:176963397G>A	uc003mhs.3	-	5	2288	c.699C>T	c.(697-699)CTC>CTT	p.L233L	FAM193B_uc003mht.2_5'UTR|FAM193B_uc003mhu.2_Silent_p.L25L|FAM193B_uc003mhv.2_5'UTR|FAM193B_uc003mhw.2_RNA	NM_019057	NP_061930	E9PET5	E9PET5_HUMAN	hypothetical protein LOC54540	278											0						TCGGGGGTGGGAGGAGAGGCC	0.592000													14	14					0	0	1	0	0
ZFP2	80108	broad.mit.edu	37	5	178358763	178358763	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr5:178358763G>A	uc003mjn.1	+	5	958	c.449G>A	c.(448-450)AGA>AAA	p.R150K	ZFP2_uc010jky.2_Missense_Mutation_p.R150K|ZFP2_uc010jkx.1_Missense_Mutation_p.R150K	NM_030613	NP_085116	Q6ZN57	ZFP2_HUMAN	zinc finger protein 2 homolog	150	C2H2-type 2.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(1)|pancreas(1)|skin(1)	3	all_cancers(89;0.000639)|all_epithelial(37;0.000109)|Renal(175;0.000159)|Lung NSC(126;0.00199)|all_lung(126;0.00351)	all_neural(177;0.00802)|Medulloblastoma(196;0.0145)|all_hematologic(541;0.248)	Kidney(164;2.23e-05)|KIRC - Kidney renal clear cell carcinoma(164;0.000178)	all cancers(165;0.00655)|GBM - Glioblastoma multiforme(465;0.0302)|OV - Ovarian serous cystadenocarcinoma(192;0.0615)|Epithelial(171;0.111)		GTACATCAAAGAATTCATACT	0.413000													15	39					0	0	1	0	0
SLC17A4	10050	broad.mit.edu	37	6	25770316	25770316	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:25770316C>T	uc003nfe.2	+	4	438	c.319C>T	c.(319-321)CCT>TCT	p.P107S	SLC17A4_uc011djx.1_Intron|SLC17A4_uc003nff.1_Intron|SLC17A4_uc003nfg.2_Missense_Mutation_p.P44S	NM_005495	NP_005486	Q9Y2C5	S17A4_HUMAN	solute carrier family 17 (sodium phosphate),	107					phosphate metabolic process	integral to plasma membrane|membrane fraction	sodium:phosphate symporter activity			skin(1)	1						TGACTGGAGTCCTGAAATCCA	0.453000													250	93					0	0	1	0	0
C6orf27	80737	broad.mit.edu	37	6	31734980	31734980	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:31734980C>T	uc011dog.1	-	13	2075	c.1837G>A	c.(1837-1839)GAT>AAT	p.D613N	C6orf27_uc003nxd.2_Missense_Mutation_p.D288N	NM_025258	NP_079534	Q9Y334	G7C_HUMAN	G7c protein precursor	613						extracellular region				ovary(3)	3						TGGGGTCCATCCTCCATGGGG	0.542000													13	15					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32046931	32046931	+	Silent	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:32046931A>G	uc003nzl.2	-	11	4456	c.4254T>C	c.(4252-4254)GTT>GTC	p.V1418V		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1505	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						CCTTGCCCCCAACACGCACCG	0.667000													114	90					0	0	1	0	0
TNXB	7148	broad.mit.edu	37	6	32047033	32047033	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:32047033G>A	uc003nzl.2	-	11	4354	c.4152C>T	c.(4150-4152)TCC>TCT	p.S1384S		NM_019105	NP_061978	P22105	TENX_HUMAN	tenascin XB isoform 1 precursor	1471	Fibronectin type-III 7.				actin cytoskeleton organization|cell adhesion|collagen metabolic process|elastic fiber assembly|signal transduction	extracellular space|intracellular|proteinaceous extracellular matrix	heparin binding|integrin binding				0						GCGAATCAGGGGAGGATCCTG	0.677000													86	56					0	0	1	0	0
NOTCH4	4855	broad.mit.edu	37	6	32172159	32172160	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:32172159_32172160GG>AA	uc003obb.2	-	19	3011_3012	c.2872_2873CC>TT	c.(2872-2874)CCA>TTA	p.P958L	NOTCH4_uc003oba.2_5'Flank|NOTCH4_uc011dpu.1_RNA|NOTCH4_uc011dpv.1_RNA	NM_004557	NP_004548	Q99466	NOTC4_HUMAN	notch4 preproprotein	958	Extracellular (Potential).|EGF-like 24.				cell fate determination|embryo development|hemopoiesis|mammary gland development|negative regulation of endothelial cell differentiation|Notch receptor processing|Notch signaling pathway|patterning of blood vessels|positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	cell surface|cytosol|endoplasmic reticulum lumen|extracellular region|Golgi lumen|integral to plasma membrane|nucleoplasm	calcium ion binding|protein heterodimerization activity|receptor activity			lung(8)|ovary(5)|breast(4)|central_nervous_system(3)|upper_aerodigestive_tract(1)|skin(1)	22						ATCGTAGCCTGGGGCACACTGC	0.545000													56	37					0	0	1	0	0
UNC5CL	222643	broad.mit.edu	37	6	40996174	40996174	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:40996174G>A	uc003opi.2	-	9	1584	c.1495C>T	c.(1495-1497)CCA>TCA	p.P499S		NM_173561	NP_775832	Q8IV45	UN5CL_HUMAN	unc-5 homolog C-like	499	Cytoplasmic (Potential).				signal transduction	cytoplasm|integral to membrane				ovary(2)	2	Ovarian(28;0.0418)|Colorectal(47;0.196)					TCGGGGCCTGGGCTGCCGCCG	0.701000											OREG0017423	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	13	11					0	0	1	0	0
APOBEC2	10930	broad.mit.edu	37	6	41029070	41029070	+	Silent	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:41029070A>G	uc003opl.2	+	2	282	c.135A>G	c.(133-135)GAA>GAG	p.E45E	UNC5CL_uc010jxe.1_Intron|APOBEC2_uc010jxf.2_Intron	NM_006789	NP_006780	Q9Y235	ABEC2_HUMAN	apolipoprotein B mRNA editing enzyme, catalytic	45					DNA demethylation|mRNA processing		cytidine deaminase activity|RNA binding|zinc ion binding				0	Ovarian(28;0.0418)|Colorectal(47;0.196)					CCTACAGAGAACGGCTGCCTG	0.473000													56	43					0	0	1	0	0
GPR111	222611	broad.mit.edu	37	6	47650362	47650362	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:47650362G>A	uc010jzj.1	+	6	2068	c.2067G>A	c.(2065-2067)CAG>CAA	p.Q689Q	GPR111_uc010jzk.1_Silent_p.Q621Q|GPR111_uc003oyy.2_RNA	NM_153839	NP_722581	Q8IZF7	GP111_HUMAN	G-protein coupled receptor 111	689	Helical; Name=7; (Potential).				neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			skin(1)	1						ATGCATTCCAGGTAAGTCCAG	0.453000													46	26					0	0	1	0	0
EFHC1	114327	broad.mit.edu	37	6	52303325	52303325	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:52303325G>A	uc003pap.3	+	3	724	c.509G>A	c.(508-510)CGA>CAA	p.R170Q	EFHC1_uc011dwv.1_Missense_Mutation_p.R79Q|EFHC1_uc011dww.1_Missense_Mutation_p.R151Q	NM_018100	NP_060570	Q5JVL4	EFHC1_HUMAN	EF-hand domain (C-terminal) containing 1	170	DM10 1.					axoneme|neuronal cell body	calcium ion binding|protein C-terminus binding			ovary(2)|skin(1)	3	Lung NSC(77;0.109)					GACCTAAATCGAGGAATAAAC	0.413000													80	58					0	0	1	0	0
C6orf142	90523	broad.mit.edu	37	6	53989385	53989385	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:53989385G>A	uc003pcg.3	+	3	447	c.334G>A	c.(334-336)GAA>AAA	p.E112K	C6orf142_uc003pcf.2_Missense_Mutation_p.E112K|C6orf142_uc003pch.3_Missense_Mutation_p.E50K|C6orf142_uc011dwz.1_Missense_Mutation_p.E71K|C6orf142_uc011dxa.1_Missense_Mutation_p.E123K	NM_138569	NP_612636	Q5VWP3	MLIP_HUMAN	hypothetical protein LOC90523	112						nuclear envelope|PML body	protein binding				0	Lung NSC(77;0.0317)					AAGGGAATTCGAAGCAAACAA	0.453000													80	44					0	0	1	0	0
BAI3	577	broad.mit.edu	37	6	70064197	70064197	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:70064197C>T	uc003pev.3	+	27	3980	c.3532C>T	c.(3532-3534)CCT>TCT	p.P1178S	BAI3_uc010kak.2_Missense_Mutation_p.P1178S|BAI3_uc011dxx.1_Missense_Mutation_p.P384S	NM_001704	NP_001695	O60242	BAI3_HUMAN	brain-specific angiogenesis inhibitor 3	1178	Cytoplasmic (Potential).				negative regulation of angiogenesis|neuropeptide signaling pathway	integral to membrane|plasma membrane	G-protein coupled receptor activity			lung(27)|ovary(8)|skin(6)|pancreas(4)|central_nervous_system(3)|urinary_tract(1)|breast(1)	50		all_lung(197;0.212)				GAGTTCGTTTCCTAATGGGCA	0.383000													67	65					0	0	1	0	0
ME1	4199	broad.mit.edu	37	6	84025037	84025037	+	Silent	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:84025037A>T	uc003pjy.2	-	6	802	c.696T>A	c.(694-696)GTT>GTA	p.V232V	ME1_uc011dzb.1_Silent_p.V157V|ME1_uc011dzc.1_Silent_p.V66V	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	232					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	ACTTGGAAGAAACTGCCTCCA	0.308000													37	33					0	0	1	0	0
ME1	4199	broad.mit.edu	37	6	84108201	84108201	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:84108201C>T	uc003pjy.2	-	3	353	c.247G>A	c.(247-249)GAA>AAA	p.E83K	ME1_uc011dzb.1_Missense_Mutation_p.E8K|ME1_uc011dzc.1_Intron	NM_002395	NP_002386	P48163	MAOX_HUMAN	cytosolic malic enzyme 1	83					carbohydrate metabolic process|cellular lipid metabolic process|malate metabolic process|NADP biosynthetic process|response to carbohydrate stimulus|response to hormone stimulus	cytosol	ADP binding|electron carrier activity|malate dehydrogenase (oxaloacetate-decarboxylating) (NADP+) activity|manganese ion binding|NAD binding|NADP binding			upper_aerodigestive_tract(1)|ovary(1)	2		all_cancers(76;1.28e-06)|Acute lymphoblastic leukemia(125;5.03e-07)|all_hematologic(105;0.000238)|all_epithelial(107;0.00218)		BRCA - Breast invasive adenocarcinoma(397;0.0641)	NADH(DB00157)	AAGAGTTTTTCATTTCTATCT	0.343000													12	14					0	0	1	0	0
PDSS2	57107	broad.mit.edu	37	6	107531744	107531744	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:107531744C>T	uc003prt.2	-	6	1197	c.907G>A	c.(907-909)GAA>AAA	p.E303K	PDSS2_uc011eak.1_Missense_Mutation_p.E167K|PDSS2_uc011eal.1_Intron|PDSS2_uc003pru.2_Missense_Mutation_p.E303K	NM_020381	NP_065114	Q86YH6	DLP1_HUMAN	prenyl diphosphate synthase, subunit 2	303					isoprenoid biosynthetic process|ubiquinone biosynthetic process	mitochondrion	protein heterodimerization activity			ovary(2)	2	Breast(9;0.0127)	all_cancers(87;3.63e-05)|Acute lymphoblastic leukemia(125;2.86e-08)|all_hematologic(75;1.14e-06)|all_epithelial(87;0.0108)|Colorectal(196;0.156)|Lung NSC(302;0.211)	BRCA - Breast invasive adenocarcinoma(8;0.0101)|all cancers(7;0.243)	BRCA - Breast invasive adenocarcinoma(108;0.112)|OV - Ovarian serous cystadenocarcinoma(136;0.173)|all cancers(137;0.191)		CTGGTCTTTTCTTTAATAAAA	0.318000													8	17					0	0	1	0	0
DDO	8528	broad.mit.edu	37	6	110726051	110726051	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:110726051G>A	uc003puc.2	-	4	472	c.468C>T	c.(466-468)CCC>CCT	p.P156P	C6orf186_uc003pub.2_Intron|DDO_uc003pud.2_Intron	NM_003649	NP_003640	Q99489	OXDD_HUMAN	D-aspartate oxidase isoform a	128					aspartate catabolic process	peroxisome	binding|D-amino-acid oxidase activity|D-aspartate oxidase activity			ovary(2)|breast(1)	3		all_cancers(87;3.47e-21)|all_epithelial(87;9.03e-20)|Acute lymphoblastic leukemia(125;2.13e-07)|all_hematologic(75;5.28e-06)|all_lung(197;2.98e-05)|Lung NSC(302;3.25e-05)|Colorectal(196;3.46e-05)|Ovarian(999;0.00327)		all cancers(137;2.54e-48)|Epithelial(106;3.11e-44)|OV - Ovarian serous cystadenocarcinoma(136;2.08e-24)|BRCA - Breast invasive adenocarcinoma(108;0.000141)|GBM - Glioblastoma multiforme(226;0.00046)		ACACATACTGGGGGAATTTCT	0.483000													16	25					0	0	1	0	0
C6orf174	387104	broad.mit.edu	37	6	127797421	127797421	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:127797421C>T	uc003qbd.2	-	6	2615	c.1750G>A	c.(1750-1752)GAG>AAG	p.E584K	C6orf174_uc003qbc.2_5'Flank	NM_001012279	NP_001012279	Q5TF21	CF174_HUMAN	hypothetical protein LOC387104 precursor	584	Potential.					integral to membrane				breast(3)|ovary(2)|skin(1)	6				GBM - Glioblastoma multiforme(226;0.026)|all cancers(137;0.161)		AGCTCGGCCTCCCTAGTGCTG	0.562000													18	52					0	0	1	0	0
TMEM200A	114801	broad.mit.edu	37	6	130762050	130762050	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:130762050G>A	uc003qca.2	+	3	1354	c.483G>A	c.(481-483)AGG>AGA	p.R161R	TMEM200A_uc010kfh.2_Silent_p.R161R|TMEM200A_uc010kfi.2_Silent_p.R161R|TMEM200A_uc003qcb.2_Silent_p.R161R	NM_052913	NP_443145	Q86VY9	T200A_HUMAN	transmembrane protein 200A	161	Cytoplasmic (Potential).					integral to membrane				ovary(1)	1				GBM - Glioblastoma multiforme(226;0.0139)|OV - Ovarian serous cystadenocarcinoma(155;0.12)		TACACATGAGGGATATCTATT	0.408000													25	44					0	0	1	0	0
ENPP1	5167	broad.mit.edu	37	6	132198296	132198296	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:132198296C>T	uc011ecf.1	+	18	1908	c.1888C>T	c.(1888-1890)CCT>TCT	p.P630S	ENPP1_uc003qcy.2_Missense_Mutation_p.P260S	NM_006208	NP_006199	P22413	ENPP1_HUMAN	ectonucleotide pyrophosphatase/phosphodiesterase	630	Extracellular (Potential).				3'-phosphoadenosine 5'-phosphosulfate metabolic process|biomineral tissue development|cellular phosphate ion homeostasis|cellular response to insulin stimulus|generation of precursor metabolites and energy|immune response|inorganic diphosphate transport|negative regulation of cell growth|negative regulation of fat cell differentiation|negative regulation of glucose import|negative regulation of glycogen biosynthetic process|negative regulation of insulin receptor signaling pathway|negative regulation of protein autophosphorylation|nucleoside triphosphate catabolic process|phosphate metabolic process|sequestering of triglyceride|water-soluble vitamin metabolic process	basolateral plasma membrane|cell surface|extracellular space|integral to membrane	ATP binding|insulin receptor binding|metal ion binding|nucleic acid binding|nucleoside-triphosphate diphosphatase activity|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|protein homodimerization activity|scavenger receptor activity			upper_aerodigestive_tract(2)|ovary(2)	4	Breast(56;0.0505)			GBM - Glioblastoma multiforme(226;0.0216)|OV - Ovarian serous cystadenocarcinoma(155;0.022)	Amifostine(DB01143)|Ribavirin(DB00811)	CTCATGTAACCCTTCGGTAAG	0.433000													7	17					0	0	1	0	0
UTRN	7402	broad.mit.edu	37	6	144780309	144780309	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr6:144780309G>A	uc003qkt.2	+	20	2619	c.2527_splice	c.e20-1	p.R843_splice	UTRN_uc010khq.1_Splice_Site_p.R843_splice	NM_007124	NP_009055	P46939	UTRO_HUMAN	utrophin						muscle contraction|muscle organ development|positive regulation of cell-matrix adhesion	cell junction|cytoplasm|cytoskeleton|membrane fraction|nucleus|postsynaptic membrane	actin binding|calcium ion binding|zinc ion binding			ovary(4)|pancreas(1)	5		Ovarian(120;0.218)		OV - Ovarian serous cystadenocarcinoma(155;5.72e-07)|GBM - Glioblastoma multiforme(68;4.9e-05)|Colorectal(48;0.213)		CTCTTCCTTAGCGGGAATTGA	0.463000													12	18					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1477776	1477776	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:1477776G>A	uc003skj.3	-	12	2415	c.2268C>T	c.(2266-2268)CTC>CTT	p.L756L	MICALL2_uc003skh.3_5'UTR|MICALL2_uc003ski.3_Silent_p.L243L	NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	756	Potential.					cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		CCACGCCGCGGAGCTCCAGGG	0.711000													2	2					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1487371	1487371	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:1487371G>A	uc003skj.3	-	4	512	c.365C>T	c.(364-366)TCG>TTG	p.S122L		NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	122						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		AGAGTCCTCCGAGGCCCTCTT	0.662000													7	10					0	0	1	0	0
MICALL2	79778	broad.mit.edu	37	7	1487373	1487373	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:1487373G>A	uc003skj.3	-	4	510	c.363C>T	c.(361-363)GCC>GCT	p.A121A		NM_182924	NP_891554	Q8IY33	MILK2_HUMAN	MICAL-like 2 isoform 1	121						cytoplasm|cytoskeleton	zinc ion binding			central_nervous_system(1)	1		Ovarian(82;0.0253)		UCEC - Uterine corpus endometrioid carcinoma (27;0.0178)|OV - Ovarian serous cystadenocarcinoma(56;6.01e-15)		AGTCCTCCGAGGCCCTCTTCA	0.662000													7	9					0	0	1	0	0
AMZ1	155185	broad.mit.edu	37	7	2752299	2752299	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:2752299G>A	uc003smr.1	+	7	1645	c.1284G>A	c.(1282-1284)GTG>GTA	p.V428V	AMZ1_uc003sms.1_3'UTR|AMZ1_uc011jwa.1_Silent_p.V177V	NM_133463	NP_597720	Q400G9	AMZ1_HUMAN	archaelysin family metallopeptidase 1	428							metallopeptidase activity|zinc ion binding				0		Ovarian(82;0.0779)		OV - Ovarian serous cystadenocarcinoma(56;5.03e-14)		AGGACCTGGTGCAGGTGGACA	0.692000													9	59					0	0	1	0	0
PMS2	5395	broad.mit.edu	37	7	6026896	6026896	+	Silent	SNP	G	A	A	rs116094787	by1000genomes	TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:6026896G>A	uc003spl.2	-	11	1587	c.1500C>T	c.(1498-1500)TCC>TCT	p.S500S	PMS2_uc003spj.2_Silent_p.S394S|PMS2_uc003spk.2_Silent_p.S365S|PMS2_uc011jwl.1_Silent_p.S365S|PMS2_uc010ktg.2_Silent_p.S189S|PMS2_uc010kte.2_Intron|PMS2_uc010ktf.1_Silent_p.S500S	NM_000535	NP_000526	P54278	PMS2_HUMAN	PMS2 postmeiotic segregation increased 2 isoform	500					mismatch repair|reciprocal meiotic recombination|somatic hypermutation of immunoglobulin genes	MutLalpha complex	ATP binding|ATPase activity|endonuclease activity|protein binding|single base insertion or deletion binding			lung(1)|central_nervous_system(1)	2		Ovarian(82;0.0694)		UCEC - Uterine corpus endometrioid carcinoma (126;0.101)|OV - Ovarian serous cystadenocarcinoma(56;4.39e-15)		CAGAATCCACGGAAGTGCTGC	0.627000			Mis|N|F			colorectal|endometrial|ovarian|medulloblastoma|glioma		Direct_reversal_of_damage|MMR	Lynch_syndrome|Turcot_syndrome|Constitutional_Mismatch_Repair_Deficiency_Syndrome				50	92					0	0	1	0	0
GLCCI1	113263	broad.mit.edu	37	7	8125961	8125961	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:8125961C>T	uc003srk.2	+	8	1996	c.1437C>T	c.(1435-1437)AAC>AAT	p.N479N		NM_138426	NP_612435	Q86VQ1	GLCI1_HUMAN	glucocorticoid induced transcript 1	479											0		Ovarian(82;0.0608)		UCEC - Uterine corpus endometrioid carcinoma (126;0.206)		TGCTCAAGAACTCCCCTAACT	0.493000													59	361					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21789345	21789345	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:21789345C>T	uc003svc.2	+	54	8775	c.8744C>T	c.(8743-8745)ACT>ATT	p.T2915I		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	2915	AAA 4 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						AACATGCCCACTGTGTTCCTG	0.453000									Kartagener_syndrome				23	55					0	0	1	0	0
DNAH11	8701	broad.mit.edu	37	7	21908530	21908530	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:21908530C>T	uc003svc.2	+	74	11940	c.11909C>T	c.(11908-11910)TCT>TTT	p.S3970F		NM_003777	NP_003768	Q96DT5	DYH11_HUMAN	dynein, axonemal, heavy chain 11	3970	AAA 6 (By similarity).				microtubule-based movement	axonemal dynein complex|cilium axoneme|cytoplasm|microtubule	ATP binding|ATPase activity|microtubule motor activity			ovary(8)|large_intestine(3)|pancreas(3)|central_nervous_system(1)	15						CACAATGTGTCTTTAGGACAA	0.478000									Kartagener_syndrome				45	90					0	0	1	0	0
NPSR1	387129	broad.mit.edu	37	7	34851465	34851465	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:34851465C>T	uc003teg.1	+	4	596	c.468C>T	c.(466-468)TTC>TTT	p.F156F	AAA1_uc010kwq.1_Intron|AAA1_uc011kaq.1_Intron|NPSR1_uc003teh.1_Silent_p.F156F|NPSR1_uc010kwt.1_Silent_p.F3F|NPSR1_uc010kwu.1_Intron|NPSR1_uc010kwv.1_Intron|NPSR1_uc003tei.1_Silent_p.F156F|NPSR1_uc010kww.1_Silent_p.F145F|NPSR1_uc011kar.1_Intron|AAA1_uc010kwy.2_Intron|AAA1_uc003tek.3_Intron	NM_207172	NP_997055	Q6W5P4	NPSR1_HUMAN	G protein-coupled receptor for asthma	156	Cytoplasmic (Potential).					cytoplasm|integral to membrane|plasma membrane	vasopressin receptor activity			skin(3)|pancreas(1)	4					Halothane(DB01159)	CCATGAAGTTCCTTCAAGGAG	0.443000													68	117					0	0	1	0	0
STARD3NL	83930	broad.mit.edu	37	7	38247239	38247239	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:38247239A>C	uc003tfr.2	+	2	282	c.134A>C	c.(133-135)AAG>ACG	p.K45T	STARD3NL_uc003tfs.2_Missense_Mutation_p.K45T|STARD3NL_uc003tft.2_Missense_Mutation_p.K45T	NM_032016	NP_114405	O95772	MENTO_HUMAN	MLN64 N-terminal homolog	45	Cytoplasmic (Potential).					integral to membrane|late endosome membrane				ovary(1)	1						GGAAGGGAAAAGAAAGGCATA	0.448000													31	163					0	0	1	0	0
RALA	5898	broad.mit.edu	37	7	39729990	39729990	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:39729990G>A	uc003thd.2	+	3	424	c.124G>A	c.(124-126)GAC>AAC	p.D42N		NM_005402	NP_005393	P11233	RALA_HUMAN	ras related v-ral simian leukemia viral oncogene	42	GTP.				actin cytoskeleton reorganization|cell cycle|chemotaxis|cytokinesis|exocytosis|interspecies interaction between organisms|membrane raft localization|nerve growth factor receptor signaling pathway|positive regulation of filopodium assembly|Ras protein signal transduction|regulation of exocytosis	cell surface|cleavage furrow|cytosol|midbody|plasma membrane	Edg-2 lysophosphatidic acid receptor binding|GTP binding|GTPase activity			lung(1)|skin(1)	2						GTTTGTGGAGGACTATGAGCC	0.323000													9	84					0	0	1	0	0
PKD1L1	168507	broad.mit.edu	37	7	47852815	47852815	+	Missense_Mutation	SNP	G	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:47852815G>C	uc003tny.1	-	49	7250	c.7250C>G	c.(7249-7251)CCC>CGC	p.P2417R	C7orf69_uc003tnz.3_Intron|C7orf69_uc003toa.1_Intron|PKD1L1_uc003tob.2_Missense_Mutation_p.P144R	NM_138295	NP_612152	Q8TDX9	PK1L1_HUMAN	polycystin-1L1	2417	Extracellular (Potential).				cell-cell adhesion	integral to membrane				ovary(8)|upper_aerodigestive_tract(2)|breast(1)	11						TATCAGGTAGGGGTTCTCAGG	0.547000													53	109					0	0	1	0	0
ABCA13	154664	broad.mit.edu	37	7	48312947	48312947	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:48312947C>T	uc003toq.2	+	17	3709	c.3684C>T	c.(3682-3684)TTC>TTT	p.F1228F	ABCA13_uc010kyr.2_Silent_p.F731F	NM_152701	NP_689914	Q86UQ4	ABCAD_HUMAN	ATP binding cassette, sub-family A (ABC1),	1228					transport	integral to membrane	ATP binding|ATPase activity			ovary(5)|central_nervous_system(4)|skin(1)	10						GGGAGGACTTCCTGGATCTCA	0.383000													12	31					0	0	1	0	0
DDC	1644	broad.mit.edu	37	7	50595843	50595843	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:50595843G>A	uc003tpf.3	-	6	792	c.706C>T	c.(706-708)CCT>TCT	p.P236S	DDC_uc010kza.2_Missense_Mutation_p.P151S|DDC_uc003tpg.3_Missense_Mutation_p.P236S	NM_000790	NP_000781	P20711	DDC_HUMAN	dopa decarboxylase (aromatic L-amino acid	236					cellular amino acid metabolic process|hormone biosynthetic process|neurotransmitter secretion	cytosol	aromatic-L-amino-acid decarboxylase activity|protein binding|pyridoxal phosphate binding			ovary(2)	2	Glioma(55;0.08)|all_neural(89;0.245)				Amantadine(DB00915)|Carbidopa(DB00190)|Flupenthixol(DB00875)|L-Tryptophan(DB00150)|Levodopa(DB01235)|Pimozide(DB01100)|Pyridoxal Phosphate(DB00114)|Remoxipride(DB00409)	ACAAAGAAAGGAATCAGGCCA	0.358000													19	72					0	0	1	0	0
SEPT14	346288	broad.mit.edu	37	7	55910796	55910796	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:55910796C>T	uc003tqz.2	-	5	514	c.397G>A	c.(397-399)GAT>AAT	p.D133N		NM_207366	NP_997249	Q6ZU15	SEP14_HUMAN	septin 14	133					cell cycle|cell division	septin complex	GTP binding|protein binding				0	Breast(14;0.214)		Lung(13;0.00024)|LUSC - Lung squamous cell carcinoma(13;0.00099)			AATTGGGCATCTATGTAGTCA	0.353000													4	11					0	0	1	0	0
LOC100287704	100287704	broad.mit.edu	37	7	62809664	62809664	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:62809664C>T	uc011kdk.1	+	1		c.217C>T				NR_028348				Homo sapiens cDNA FLJ46332 fis, clone TESTI4045470.												0						CCTTGAGCCCCTCCTTCCTCA	0.612000													3	5					0	0	1	0	0
POM121	9883	broad.mit.edu	37	7	72400636	72400636	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:72400636G>A	uc003twk.2	+	5	1262	c.1262G>A	c.(1261-1263)CGA>CAA	p.R421Q	POM121_uc003twj.2_Missense_Mutation_p.R156Q|POM121_uc010lam.1_Missense_Mutation_p.R156Q	NM_172020	NP_742017	Q96HA1	P121A_HUMAN	nuclear pore membrane protein 121	421	Ser-rich.|Pore side (Potential).				carbohydrate metabolic process|glucose transport|mRNA transport|protein transport|regulation of glucose transport|transmembrane transport|viral reproduction	endoplasmic reticulum membrane|nuclear membrane|nuclear pore					0		Lung NSC(55;0.163)				AGCTCCACTCGAGGCATCTCA	0.448000													108	234					0	0	1	0	0
RHBDD2	57414	broad.mit.edu	37	7	75517507	75517507	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:75517507C>T	uc003udw.1	+	4	1019	c.935C>T	c.(934-936)CCA>CTA	p.P312L	RHBDD2_uc003udv.1_Missense_Mutation_p.P171L	NM_001040456	NP_001035546	Q6NTF9	RHBD2_HUMAN	rhomboid domain containing 2 isoform a	312						integral to membrane	serine-type endopeptidase activity				0						CACTTTGGTCCAAACCCCACC	0.657000													104	232					0	0	1	0	0
PCLO	27445	broad.mit.edu	37	7	82579779	82579779	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:82579779G>A	uc003uhx.2	-	6	10414	c.10125C>T	c.(10123-10125)ACC>ACT	p.T3375T	PCLO_uc003uhv.2_Silent_p.T3375T|PCLO_uc010lec.2_Silent_p.T340T	NM_033026	NP_149015	Q9Y6V0	PCLO_HUMAN	piccolo isoform 1	3306					cytoskeleton organization|synaptic vesicle exocytosis	cell junction|cytoskeleton|synaptic vesicle	calcium ion binding|calcium-dependent phospholipid binding|profilin binding|transporter activity			ovary(7)	7						CAGACTGAACGGTGTACCATC	0.458000													7	39					0	0	1	0	0
GRM3	2913	broad.mit.edu	37	7	86479783	86479783	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:86479783C>T	uc003uid.2	+	5	3588	c.2489C>T	c.(2488-2490)CCC>CTC	p.P830L	GRM3_uc010lef.2_Silent_p.T472T|GRM3_uc010leg.2_Missense_Mutation_p.P702L|GRM3_uc010leh.2_Missense_Mutation_p.P422L	NM_000840	NP_000831	Q14832	GRM3_HUMAN	glutamate receptor, metabotropic 3 precursor	830	Cytoplasmic (Potential).				synaptic transmission	integral to plasma membrane				lung(4)|ovary(3)|central_nervous_system(2)|skin(2)|haematopoietic_and_lymphoid_tissue(1)|prostate(1)	13	Esophageal squamous(14;0.0058)|all_lung(186;0.132)|Lung NSC(181;0.142)				Acamprosate(DB00659)|Nicotine(DB00184)	CTGTTTCAACCCCAGAAGAAT	0.488000													32	89					0	0	1	0	0
CALCR	799	broad.mit.edu	37	7	93067372	93067372	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:93067372C>T	uc003umv.1	-	12	1293	c.1032G>A	c.(1030-1032)GTG>GTA	p.V344V	CALCR_uc011kia.1_Silent_p.V124V|CALCR_uc003ums.1_RNA|CALCR_uc003umt.1_RNA|CALCR_uc003umu.1_Silent_p.V310V|CALCR_uc003umw.2_Silent_p.V310V	NM_001742	NP_001733	P30988	CALCR_HUMAN	calcitonin receptor isoform 2 precursor	326	Helical; Name=5; (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|elevation of cytosolic calcium ion concentration|positive regulation of adenylate cyclase activity|response to glucocorticoid stimulus	integral to plasma membrane	calcitonin binding|calcitonin binding|calcitonin receptor activity|calcitonin receptor activity|protein binding			ovary(3)|lung(3)|skin(2)|pancreas(1)	9	all_cancers(62;3.18e-12)|all_epithelial(64;1.34e-11)|Breast(17;0.000675)|Lung NSC(181;0.207)		STAD - Stomach adenocarcinoma(171;0.000244)		Salmon Calcitonin(DB00017)	TAATTCTCACCACAAGTGCCG	0.348000													19	56					0	0	1	0	0
DYNC1I1	1780	broad.mit.edu	37	7	95499310	95499310	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:95499310G>A	uc003uoc.3	+	6	818	c.541G>A	c.(541-543)GAG>AAG	p.E181K	DYNC1I1_uc003uod.3_Missense_Mutation_p.E164K|DYNC1I1_uc003uob.2_Missense_Mutation_p.E144K|DYNC1I1_uc003uoe.3_Missense_Mutation_p.E161K|DYNC1I1_uc010lfl.2_Missense_Mutation_p.E170K	NM_004411	NP_004402	O14576	DC1I1_HUMAN	dynein, cytoplasmic 1, intermediate chain 1	181					vesicle transport along microtubule	condensed chromosome kinetochore|cytoplasmic dynein complex|microtubule|perinuclear region of cytoplasm|spindle pole|vesicle	microtubule binding|microtubule motor activity			ovary(3)|kidney(1)	4	all_cancers(62;9.39e-10)|all_epithelial(64;2.28e-09)|Lung NSC(181;0.165)|all_lung(186;0.191)		STAD - Stomach adenocarcinoma(171;0.0957)			TCAGTCTGAAGGTAAACTATG	0.453000													8	19					0	0	1	0	0
SLC25A13	10165	broad.mit.edu	37	7	95761117	95761117	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:95761117G>A	uc003uof.3	-	15	1720	c.1529C>T	c.(1528-1530)TCC>TTC	p.S510F	SLC25A13_uc003uog.3_Missense_Mutation_p.S511F|SLC25A13_uc011kik.1_Missense_Mutation_p.S402F	NM_014251	NP_055066	Q9UJS0	CMC2_HUMAN	solute carrier family 25, member 13 isoform 2	510	Solcar 2.				ATP biosynthetic process|gluconeogenesis|malate-aspartate shuttle|response to calcium ion	integral to plasma membrane|mitochondrial inner membrane	calcium ion binding|L-aspartate transmembrane transporter activity|L-glutamate transmembrane transporter activity			central_nervous_system(3)|skin(1)	4	all_cancers(62;7.75e-08)|all_epithelial(64;1.16e-07)		STAD - Stomach adenocarcinoma(171;0.194)		L-Aspartic Acid(DB00128)	ATTTGCAAAGGAAGCCTTCAC	0.512000													21	35					0	0	1	0	0
AZGP1	563	broad.mit.edu	37	7	99569492	99569492	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:99569492C>T	uc003ush.2	-	2	258	c.214G>A	c.(214-216)GGA>AGA	p.G72R		NM_001185	NP_001176	P25311	ZA2G_HUMAN	alpha-2-glycoprotein 1, zinc	72					antigen processing and presentation|cell adhesion|immune response|lipid catabolic process|negative regulation of cell proliferation	extracellular region|MHC class I protein complex	fatty acid binding|protein transmembrane transporter activity|ribonuclease activity			ovary(1)|central_nervous_system(1)	2	Esophageal squamous(72;0.0166)|Lung NSC(181;0.0211)|all_lung(186;0.0323)					CTCCAGAGTCCCATGGGCTGA	0.512000													28	103					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100679413	100679413	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:100679413C>T	uc003uxp.1	+	3	4769	c.4716C>T	c.(4714-4716)AGC>AGT	p.S1572S	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	1572	Extracellular (Potential).|Ser-rich.|59 X approximate tandem repeats.|24.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					GTGAAGGAAGCACTCCACTAA	0.493000													79	391					0	0	1	0	0
MUC17	140453	broad.mit.edu	37	7	100683411	100683411	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:100683411A>C	uc003uxp.1	+	3	8767	c.8714A>C	c.(8713-8715)GAA>GCA	p.E2905A	MUC17_uc010lho.1_RNA	NM_001040105	NP_001035194	Q685J3	MUC17_HUMAN	mucin 17 precursor	2905	Extracellular (Potential).|47.|59 X approximate tandem repeats.|Ser-rich.					extracellular region|integral to membrane|plasma membrane	extracellular matrix constituent, lubricant activity			ovary(14)|skin(8)|breast(3)|lung(2)	27	Lung NSC(181;0.136)|all_lung(186;0.182)					ACTTCTACTGAAGGCAGTTCT	0.483000													155	386					0	0	1	0	0
EMID2	136227	broad.mit.edu	37	7	101187320	101187320	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:101187320C>T	uc010lhy.1	+	6	832	c.640C>T	c.(640-642)CCC>TCC	p.P214S	EMID2_uc003uyo.1_Missense_Mutation_p.P216S	NM_133457	NP_597714	Q96A83	EMID2_HUMAN	EMI domain containing 2	216	Collagen-like 1.					collagen				ovary(1)	1	Lung NSC(181;0.215)					TGCAGGCCCCCCCGGGTCTAA	0.647000													6	16					0	0	1	0	0
ALKBH4	54784	broad.mit.edu	37	7	102097926	102097926	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:102097926G>A	uc003uzl.2	-	3	829	c.824C>T	c.(823-825)GCT>GTT	p.A275V	ALKBH4_uc003uzm.2_Missense_Mutation_p.A202V	NM_017621	NP_060091	Q9NXW9	ALKB4_HUMAN	alkB, alkylation repair homolog 4	275						cytoplasm|nucleus	metal ion binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen				0						GCCAAACTCAGCCGACAGCTC	0.667000													27	51					0	0	1	0	0
SRPK2	6733	broad.mit.edu	37	7	104782675	104782675	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:104782675G>A	uc003vct.2	-	10	1477	c.1290C>T	c.(1288-1290)TCC>TCT	p.S430S	SRPK2_uc003vcu.2_Silent_p.S430S|SRPK2_uc003vcv.2_Silent_p.S441S|SRPK2_uc003vcw.1_Silent_p.S430S	NM_182691	NP_872633	P78362	SRPK2_HUMAN	serine/arginine-rich protein-specific kinase 2	430	Protein kinase.				angiogenesis|cell differentiation|intracellular protein kinase cascade|negative regulation of viral genome replication|nuclear speck organization|positive regulation of cell cycle|positive regulation of cell proliferation|positive regulation of gene expression|positive regulation of neuron apoptosis|positive regulation of viral genome replication|spliceosome assembly	cytoplasm|nucleolus	14-3-3 protein binding|ATP binding|magnesium ion binding|protein serine/threonine kinase activity			central_nervous_system(3)|ovary(2)|upper_aerodigestive_tract(1)	6						ATTGTTCATAGGAGCTGCTAT	0.413000													55	133					0	0	1	0	0
SLC26A4	5172	broad.mit.edu	37	7	107314679	107314679	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:107314679C>T	uc003vep.2	+	5	710	c.486C>T	c.(484-486)CTC>CTT	p.L162L		NM_000441	NP_000432	O43511	S26A4_HUMAN	pendrin	162	Extracellular (Potential).				regulation of pH|regulation of protein localization|sensory perception of sound	apical plasma membrane|integral to membrane	chloride transmembrane transporter activity|inorganic anion exchanger activity|iodide transmembrane transporter activity|secondary active sulfate transmembrane transporter activity			ovary(3)|central_nervous_system(2)|skin(2)	7						AACACTTTCTCGTATCCAGCA	0.458000									Pendred_syndrome				56	130					0	0	1	0	0
LAMB4	22798	broad.mit.edu	37	7	107704222	107704222	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:107704222G>A	uc010ljo.1	-	22	3129	c.3045C>T	c.(3043-3045)CTC>CTT	p.L1015L	LAMB4_uc003vey.2_Silent_p.L1015L|LAMB4_uc010ljp.1_5'UTR	NM_007356	NP_031382	A4D0S4	LAMB4_HUMAN	laminin, beta 4 precursor	1015	Laminin EGF-like 10.				cell adhesion	basement membrane				ovary(4)|breast(2)|large_intestine(1)|skin(1)	8						AGGTCTGATTGAGGGCTGATC	0.522000													90	199					0	0	1	0	0
MET	4233	broad.mit.edu	37	7	116435746	116435746	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:116435746G>A	uc003vij.2	+	20	4023	c.3836G>A	c.(3835-3837)AGA>AAA	p.R1279K	MET_uc010lkh.2_Missense_Mutation_p.R1297K|MET_uc011knj.1_Missense_Mutation_p.R849K	NM_000245	NP_000236	P08581	MET_HUMAN	met proto-oncogene isoform b precursor	1279	Protein kinase.|Interaction with RANBP9.|Cytoplasmic (Potential).				axon guidance|cell proliferation	basal plasma membrane|integral to plasma membrane	ATP binding|hepatocyte growth factor receptor activity|protein binding			upper_aerodigestive_tract(63)|lung(41)|kidney(18)|NS(10)|ovary(5)|thyroid(4)|central_nervous_system(4)|stomach(3)|liver(3)|pleura(2)|large_intestine(2)|breast(2)|testis(1)|skin(1)	159	all_cancers(3;1.25e-07)|all_epithelial(6;4.07e-08)|Lung NSC(10;0.00108)|all_lung(10;0.00125)	Ovarian(593;0.133)	GBM - Glioblastoma multiforme(2;2.31e-07)|all cancers(2;0.000419)|STAD - Stomach adenocarcinoma(10;0.000512)			CTGATGACAAGAGGAGCCCCA	0.463000			Mis		papillary renal|head-neck squamous cell 	papillary renal			Hereditary_Papillary_Renal_Carcinoma_(type_1)		OREG0003446	type=REGULATORY REGION|Gene=MET|Dataset=Stanford ENCODE Dataset|EvidenceSubtype=Transient transfection luciferase assay	108	255					0	0	1	0	0
CFTR	1080	broad.mit.edu	37	7	117230431	117230431	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:117230431G>T	uc003vjd.2	+	13	1836	c.1704G>T	c.(1702-1704)TTG>TTT	p.L568F	CFTR_uc011knq.1_5'UTR	NM_000492	NP_000483	P13569	CFTR_HUMAN	cystic fibrosis transmembrane conductance	568	Cytoplasmic (Potential).|ABC transporter 1.				respiratory gaseous exchange	apical plasma membrane|basolateral plasma membrane|chloride channel complex|early endosome membrane	ATP binding|ATP-binding and phosphorylation-dependent chloride channel activity|channel-conductance-controlling ATPase activity|chloride channel regulator activity|enzyme binding|PDZ domain binding			central_nervous_system(2)|skin(2)|ovary(1)	5	Lung NSC(10;0.00148)|all_lung(10;0.00171)		STAD - Stomach adenocarcinoma(10;0.000534)		Bumetanide(DB00887)|Glibenclamide(DB01016)	ATGCTGATTTGTATTTATTAG	0.299000									Cystic_Fibrosis				7	64					7.48243e-07	7.6048e-07	1	1	0
TSPAN12	23554	broad.mit.edu	37	7	120480083	120480083	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:120480083C>T	uc003vjk.2	-	3	521	c.147G>A	c.(145-147)ACG>ACA	p.T49T		NM_012338	NP_036470	O95859	TSN12_HUMAN	transmembrane 4 superfamily member 12	49	Extracellular (Potential).				angiogenesis|cell surface receptor linked signaling pathway|regulation of angiogenesis|retina layer formation	integral to plasma membrane|membrane fraction					0	all_neural(327;0.117)					AAGTATACCTCGTTTCTGCAG	0.358000													22	47					0	0	1	0	0
GRM8	2918	broad.mit.edu	37	7	126173315	126173315	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:126173315G>A	uc003vlr.2	-	8	2432	c.2121C>T	c.(2119-2121)CTC>CTT	p.L707L	GRM8_uc003vls.2_RNA|GRM8_uc011kof.1_RNA|GRM8_uc003vlt.2_Silent_p.L707L|GRM8_uc010lkz.1_RNA	NM_000845	NP_000836	O00222	GRM8_HUMAN	glutamate receptor, metabotropic 8 isoform a	707	Helical; Name=4; (Potential).				negative regulation of cAMP biosynthetic process|sensory perception of smell|visual perception	integral to plasma membrane				lung(15)|ovary(5)|pancreas(1)|breast(1)|skin(1)	23		Prostate(267;0.186)			L-Glutamic Acid(DB00142)	ACACTCCAAGGAGCTGGACGG	0.522000										HNSCC(24;0.065)			20	51					0	0	1	0	0
CPA2	1358	broad.mit.edu	37	7	129916533	129916533	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:129916533C>T	uc003vpq.2	+	7	670	c.651C>T	c.(649-651)CTC>CTT	p.L217L	CPA2_uc011kpc.1_Silent_p.L217L	NM_001869	NP_001860	P48052	CBPA2_HUMAN	carboxypeptidase A2 (pancreatic) precursor	217					proteolysis|vacuolar protein catabolic process	extracellular region|vacuole	metallocarboxypeptidase activity|zinc ion binding			ovary(1)	1	Melanoma(18;0.0435)					ATATCTTCCTCCTGCCAGTCA	0.443000													64	128					0	0	1	0	0
DGKI	9162	broad.mit.edu	37	7	137263039	137263039	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:137263039G>A	uc003vtt.2	-	16	1676	c.1675C>T	c.(1675-1677)CGA>TGA	p.R559*	DGKI_uc003vtu.2_Nonsense_Mutation_p.R259*	NM_004717	NP_004708	O75912	DGKI_HUMAN	diacylglycerol kinase, iota	559					activation of protein kinase C activity by G-protein coupled receptor protein signaling pathway|intracellular signal transduction|platelet activation	nucleus|plasma membrane	ATP binding|diacylglycerol kinase activity|metal ion binding			ovary(1)|kidney(1)|skin(1)	3						ATTTTATTTCGAAAACGACTG	0.338000													16	45					0	0	1	0	0
BRAF	673	broad.mit.edu	37	7	140453136	140453136	+	Missense_Mutation	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:140453136A>T	uc003vwc.3	-	15	1860	c.1799T>A	c.(1798-1800)GTG>GAG	p.V600E		NM_004333	NP_004324	P15056	BRAF_HUMAN	B-Raf	600	Protein kinase.		V -> D (in a melanoma cell line; requires 2 nucleotide substitutions).|V -> E (in sarcoma, colorectal adenocarcinoma, metastatic melanoma, ovarian serous carcinoma, pilocytic astrocytoma; somatic mutation; most common mutation; constitutive and elevated kinase activity; efficiently induces cell transformation; suppression of mutation in melanoma causes growth arrest and promotes apoptosis).		activation of MAPKK activity|anti-apoptosis|nerve growth factor receptor signaling pathway|organ morphogenesis|positive regulation of peptidyl-serine phosphorylation|small GTPase mediated signal transduction|synaptic transmission	cytosol|nucleus|plasma membrane	ATP binding|metal ion binding	p.V600E(16892)|p.V600?(325)|p.V600K(176)|p.V600R(36)|p.V600M(25)|p.V600A(23)|p.V600D(21)|p.V600G(11)|p.V600_K601>E(8)|p.T599_V600insTT(3)|p.T599_R603>I(2)|p.T599_V600>IAL(2)|p.V600L(2)|p.T599_V600insT(2)|p.V600_W604del(1)|p.V600_S605>DV(1)|p.V600_S605>D(1)|p.T599_V600insV(1)|p.T599_V600insDFGLAT(1)	KIAA1549/BRAF(229)|AKAP9_ENST00000356239/BRAF(10)|AGTRAP/BRAF(2)|FCHSD1/BRAF(2)|SLC45A3/BRAF(2)	thyroid(8166)|large_intestine(5052)|skin(3798)|NS(368)|central_nervous_system(284)|ovary(236)|lung(78)|eye(53)|prostate(44)|endometrium(30)|biliary_tract(28)|soft_tissue(27)|haematopoietic_and_lymphoid_tissue(22)|breast(18)|upper_aerodigestive_tract(13)|stomach(13)|pancreas(10)|small_intestine(10)|testis(7)|bone(6)|cervix(5)|genital_tract(4)|oesophagus(3)|urinary_tract(3)|adrenal_gland(3)|gastrointestinal_tract_(site_indeterminate)(2)|liver(2)|meninges(1)|kidney(1)|autonomic_ganglia(1)|pituitary(1)|salivary_gland(1)	18290	Melanoma(164;0.00956)				Sorafenib(DB00398)	TCGAGATTTCACTGTAGCTAG	0.368000	V600E(UACC257_SKIN)|V600D(K029AX_SKIN)|V600E(HS695T_SKIN)|V600E(COLO679_SKIN)|V600E(BT474_BREAST)|V600E(IGR39_SKIN)|V600E(A101D_SKIN)|V600E(COLO783_SKIN)|V600E(IGR37_SKIN)|V600E(A375_SKIN)|V600E(WM793_SKIN)|V600E(COLO818_SKIN)|V600E(HS294T_SKIN)|V600E(SKMEL28_SKIN)|V600E(DU4475_BREAST)|V600E(SIGM5_HAEMATOPOIETIC_AND_LYMPHOID_TISSUE)|V600E(IGR1_SKIN)|V600E(SKHEP1_LIVER)|V600E(WM983B_SKIN)|V600E(GCT_SOFT_TISSUE)|V600E(RVH421_SKIN)|V600D(WM2664_SKIN)|V600E(CL34_LARGE_INTESTINE)|V600E(SKMEL24_SKIN)|V600D(WM115_SKIN)|V600E(MALME3M_SKIN)|V600E(A673_BONE)|V600E(C32_SKIN)|V600E(DBTRG05MG_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO800_SKIN)|V600E(COLO741_SKIN)|V600E(HS939T_SKIN)|V600E(COLO205_LARGE_INTESTINE)|V600E(K029AX_SKIN)|V600E(AM38_CENTRAL_NERVOUS_SYSTEM)|V600E(SH4_SKIN)|V600E(WM88_SKIN)|V600E(KG1C_CENTRAL_NERVOUS_SYSTEM)|V600E(COLO849_SKIN)|V600E(MELHO_SKIN)|V600E(BHT101_THYROID)|V600E(G361_SKIN)|V600E(UACC62_SKIN)|V600E(BCPAP_THYROID)|V600E(8505C_THYROID)|V600E(SW1417_LARGE_INTESTINE)|V600E(COLO829_SKIN)|V600E(RKO_LARGE_INTESTINE)|V600E(A2058_SKIN)|V600E(RPMI7951_SKIN)|V600E(OUMS23_LARGE_INTESTINE)|V600E(SKMEL5_SKIN)|V600E(ES2_OVARY)|V600E(LOXIMVI_SKIN)	61	Mis|T|O	AKAP9|KIAA1549	melanoma|colorectal|papillary thyroid|borderline ov|Non small-cell lung cancer (NSCLC)|cholangiocarcinoma|pilocytic astrocytoma		Cardio-facio-cutaneous syndrome		Cardiofaciocutaneous_syndrome				43	76					0	0	1	0	0
TAS2R38	5726	broad.mit.edu	37	7	141672661	141672661	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:141672661T>A	uc003vwx.1	-	1	913	c.829A>T	c.(829-831)ATA>TTA	p.I277L		NM_176817	NP_789787	P59533	T2R38_HUMAN	taste receptor, type 2, member 38	277	Helical; Name=7; (Potential).				sensory perception of taste	integral to membrane	G-protein coupled receptor activity			kidney(1)|skin(1)	2	Melanoma(164;0.0171)					ATCACCCCTATTTTGTCGCGC	0.498000													40	89					0	0	1	0	0
Unknown	0	broad.mit.edu	37	7	142001145	142001145	+	Silent	SNP	A	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:142001145A>T	uc011kro.1	+	2	282	c.237A>T	c.(235-237)ATA>ATT	p.I79I						SubName: Full=V_segment translation product; Flags: Fragment;																		AGTCTGAAATATTCGATGATC	0.398000													8	10					0	0	1	0	0
TRPV5	56302	broad.mit.edu	37	7	142609655	142609655	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:142609655C>T	uc003wby.1	-	13	2045	c.1781G>A	c.(1780-1782)AGG>AAG	p.R594K		NM_019841	NP_062815	Q9NQA5	TRPV5_HUMAN	transient receptor potential cation channel,	594	Cytoplasmic (Potential).				protein tetramerization	apical plasma membrane|integral to plasma membrane	calcium channel activity			ovary(3)|central_nervous_system(2)|skin(1)	6	Melanoma(164;0.059)					CACCTGGGCCCTCCAGAGCTC	0.498000													40	92					0	0	1	0	0
CLCN1	1180	broad.mit.edu	37	7	143029570	143029570	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:143029570G>A	uc003wcr.1	+	11	1312	c.1225G>A	c.(1225-1227)GGA>AGA	p.G409R	CLCN1_uc011ktc.1_Missense_Mutation_p.G71R	NM_000083	NP_000074	P35523	CLCN1_HUMAN	chloride channel 1, skeletal muscle	409					muscle contraction	chloride channel complex|integral to plasma membrane	voltage-gated chloride channel activity			ovary(2)|breast(1)|central_nervous_system(1)|skin(1)	5	Melanoma(164;0.205)					CTTCCCACCAGGAATGGGTCA	0.483000													50	139					0	0	1	0	0
EPHA1	2041	broad.mit.edu	37	7	143092521	143092521	+	Missense_Mutation	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:143092521T>G	uc003wcz.2	-	12	2061	c.1974A>C	c.(1972-1974)TTA>TTC	p.L658F		NM_005232	NP_005223	P21709	EPHA1_HUMAN	ephrin receptor EphA1 precursor	658	Protein kinase.|Cytoplasmic (Potential).					integral to plasma membrane	ATP binding|ephrin receptor activity			ovary(3)|lung(1)|breast(1)	5	Melanoma(164;0.205)	Myeloproliferative disorder(862;0.0255)				ATGTGTCTTTTAAGGTCTTAA	0.542000											OREG0018405	type=REGULATORY REGION|TFbs=CTCF|Dataset=CTCF ChIP-chip sites (Ren lab)|EvidenceSubtype=ChIP-on-chip (ChIP-chip)	33	135					0	0	1	0	0
OR2F2	135948	broad.mit.edu	37	7	143632379	143632379	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:143632379C>T	uc011ktv.1	+	1	54	c.54C>T	c.(52-54)TCC>TCT	p.S18S		NM_001004685	NP_001004685	O95006	OR2F2_HUMAN	olfactory receptor, family 2, subfamily F,	18	Extracellular (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(3)|skin(1)	4	Melanoma(164;0.0903)					TTGGCTTATCCAGTGACTGGT	0.413000													71	184					0	0	1	0	0
OR2A12	346525	broad.mit.edu	37	7	143792332	143792332	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:143792332C>T	uc011kty.1	+	1	132	c.132C>T	c.(130-132)ATC>ATT	p.I44I		NM_001004135	NP_001004135	Q8NGT7	O2A12_HUMAN	olfactory receptor, family 2, subfamily A,	44	Helical; Name=1; (Potential).				sensory perception of smell	integral to membrane|plasma membrane	olfactory receptor activity			ovary(2)|central_nervous_system(1)	3	Melanoma(164;0.0783)					ATGGGATTATCCTGGGGCTCA	0.498000													48	116					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149474717	149474717	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:149474717C>T	uc010lpk.2	+	5	516	c.516C>T	c.(514-516)GCC>GCT	p.A172A	SSPO_uc010lpl.1_Intron	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	172					cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CTTCTCCAGCCCTCCTGCAGC	0.672000													12	32					0	0	1	0	0
SSPO	23145	broad.mit.edu	37	7	149518985	149518985	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:149518985C>T	uc010lpk.2	+	91	12789	c.12789C>T	c.(12787-12789)TCC>TCT	p.S4263S	SSPO_uc010lpm.1_RNA|SSPO_uc003wgg.2_RNA|SSPO_uc003wgh.2_RNA|SSPO_uc003wgi.1_5'Flank	NM_198455	NP_940857	A2VEC9	SSPO_HUMAN	SCO-spondin precursor	4263	TSP type-1 20.				cell adhesion	extracellular space	peptidase inhibitor activity				0	Melanoma(164;0.165)|Ovarian(565;0.177)		OV - Ovarian serous cystadenocarcinoma(82;0.00625)			CCTCCTGGTCCGACTGCCCTG	0.677000													3	14					0	0	1	0	0
TMEM176A	55365	broad.mit.edu	37	7	150501949	150501949	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:150501949G>A	uc003whx.1	+	7	779	c.701G>A	c.(700-702)GGA>GAA	p.G234E		NM_018487	NP_060957	Q96HP8	T176A_HUMAN	hepatocellular carcinoma-associated antigen 112	234						integral to membrane				ovary(2)	2			OV - Ovarian serous cystadenocarcinoma(82;0.0121)	UCEC - Uterine corpus endometrioid carcinoma (81;0.168)		GAAGTGAGTGGAATCTAGCCA	0.517000													35	86					0	0	1	0	0
MLL3	58508	broad.mit.edu	37	7	151970904	151970904	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:151970904C>T	uc003wla.2	-	7	1117	c.898G>A	c.(898-900)GAG>AAG	p.E300K		NM_170606	NP_733751	Q8NEZ4	MLL3_HUMAN	myeloid/lymphoid or mixed-lineage leukemia 3	300					intracellular signal transduction|regulation of transcription, DNA-dependent|transcription, DNA-dependent		DNA binding|protein binding|zinc ion binding			large_intestine(27)|pancreas(13)|ovary(9)|central_nervous_system(8)|breast(3)|upper_aerodigestive_tract(1)|urinary_tract(1)|skin(1)	63	all_neural(206;0.187)	all_hematologic(28;0.0592)|Prostate(32;0.0906)	OV - Ovarian serous cystadenocarcinoma(82;0.00715)	UCEC - Uterine corpus endometrioid carcinoma (81;0.0597)|BRCA - Breast invasive adenocarcinoma(188;0.0462)		GTACATTTCTCTTCACAGCAT	0.423000			N		medulloblastoma								5	158					0	0	1	0	0
CSMD1	64478	broad.mit.edu	37	8	2855630	2855630	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:2855630C>T	uc011kwk.1	-	54	8673	c.8283G>A	c.(8281-8283)GTG>GTA	p.V2761V	CSMD1_uc011kwj.1_Silent_p.V2090V|CSMD1_uc010lrg.2_Silent_p.V771V	NM_033225	NP_150094	Q96PZ7	CSMD1_HUMAN	CUB and Sushi multiple domains 1 precursor	2761	Extracellular (Potential).|Sushi 19.					integral to membrane				breast(20)|large_intestine(5)	25		all_cancers(1;5.7e-41)|all_epithelial(1;2.54e-36)|Lung NSC(1;7.54e-11)|all_lung(1;3.2e-10)|Hepatocellular(1;3.78e-05)|Breast(1;0.000196)|Myeloproliferative disorder(4;0.000374)|Esophageal squamous(1;0.0157)|Ovarian(12;0.091)|Renal(68;0.144)|Colorectal(14;0.234)		all cancers(1;5.03e-41)|Epithelial(1;4.78e-31)|Lung(1;1.14e-14)|LUSC - Lung squamous cell carcinoma(1;2.34e-14)|GBM - Glioblastoma multiforme(1;4.49e-10)|Colorectal(4;1.18e-07)|OV - Ovarian serous cystadenocarcinoma(1;3.2e-07)|BRCA - Breast invasive adenocarcinoma(1;6.17e-07)|COAD - Colon adenocarcinoma(4;0.000539)|READ - Rectum adenocarcinoma(4;0.00896)|Kidney(5;0.00957)|KIRC - Kidney renal clear cell carcinoma(5;0.0689)		AGGTGAAATTCACGACATCAT	0.557000													55	100					0	0	1	0	0
SGK223	157285	broad.mit.edu	37	8	8234901	8234901	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:8234901C>T	uc003wsh.3	-	2	1018	c.1018G>A	c.(1018-1020)GGC>AGC	p.G340S		NM_001080826	NP_001074295	Q86YV5	SG223_HUMAN	pragmin	340							ATP binding|non-membrane spanning protein tyrosine kinase activity				0						CAAGAGAGGCCGTCGGAAGAA	0.647000													5	15					0	0	1	0	0
MSRA	4482	broad.mit.edu	37	8	9912149	9912149	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:9912149G>A	uc003wsx.2	+	1	320	c.123G>A	c.(121-123)AAG>AAA	p.K41K	MSRA_uc011kwx.1_Silent_p.K41K	NM_012331	NP_036463	Q9UJ68	MSRA_HUMAN	methionine sulfoxide reductase A isoform a	41					methionine metabolic process|protein modification process|response to oxidative stress	mitochondrion|nucleus	peptide-methionine-(S)-S-oxide reductase activity				0		Myeloproliferative disorder(644;0.178)			L-Methionine(DB00134)	CGGGCCGGAAGGAACAGACCC	0.711000													6	41					0	0	1	0	0
BLK	640	broad.mit.edu	37	8	11418822	11418822	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:11418822G>A	uc003wty.2	+	11	1622	c.1041G>A	c.(1039-1041)GGG>GGA	p.G347G	BLK_uc003wtz.2_Silent_p.G276G|BLK_uc003wua.2_Silent_p.G183G	NM_001715	NP_001706	P51451	BLK_HUMAN	B lymphoid tyrosine kinase	347	Protein kinase.				intracellular protein kinase cascade|positive regulation of insulin secretion		ATP binding|non-membrane spanning protein tyrosine kinase activity			large_intestine(1)|stomach(1)|ovary(1)	3			STAD - Stomach adenocarcinoma(15;0.00391)	COAD - Colon adenocarcinoma(149;0.207)		TTGCTGAAGGGATGGCATACA	0.597000													14	26					0	0	1	0	0
NAT1	9	broad.mit.edu	37	8	18080296	18080296	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:18080296A>G	uc010ltd.2	+	5	1107	c.740A>G	c.(739-741)AAG>AGG	p.K247R	NAT1_uc003wyt.2_Missense_Mutation_p.K309R|NAT1_uc003wyu.2_Missense_Mutation_p.K247R|NAT1_uc003wyv.2_Missense_Mutation_p.K247R|NAT1_uc010ltc.2_Missense_Mutation_p.K247R|NAT1_uc003wys.2_Missense_Mutation_p.K309R|NAT1_uc003wyr.2_Missense_Mutation_p.K247R|NAT1_uc003wyq.2_Missense_Mutation_p.K247R|NAT1_uc011kyl.1_Missense_Mutation_p.K247R	NM_001160179	NP_001153651	P18440	ARY1_HUMAN	N-acetyltransferase 1 isoform a	247					xenobiotic metabolic process	cytosol	arylamine N-acetyltransferase activity				0				Colorectal(111;0.0519)|COAD - Colon adenocarcinoma(73;0.208)		TTCAATTATAAGGACAATACA	0.378000													10	25					0	0	1	0	0
LOXL2	4017	broad.mit.edu	37	8	23174609	23174609	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:23174609C>T	uc003xdh.1	-	9	1828	c.1489G>A	c.(1489-1491)GGA>AGA	p.G497R	LOXL2_uc010lty.1_Missense_Mutation_p.G36R	NM_002318	NP_002309	Q9Y4K0	LOXL2_HUMAN	lysyl oxidase-like 2 precursor	497	SRCR 4.				aging|cell adhesion|protein modification process	extracellular space|membrane	copper ion binding|electron carrier activity|oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor|scavenger receptor activity			breast(2)|ovary(1)	3		Prostate(55;0.0453)|Breast(100;0.143)		Colorectal(74;0.0288)|COAD - Colon adenocarcinoma(73;0.096)		TTGACATCTCCGTGCCAATAC	0.458000													65	126					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24201052	24201052	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:24201052G>A	uc003xdy.2	+	18	2028	c.1945G>A	c.(1945-1947)GAA>AAA	p.E649K	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Missense_Mutation_p.E336K	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	649	EGF-like.|Extracellular (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TCAATGTGAGGAAGGATGGAT	0.512000													31	74					0	0	1	0	0
ADAM28	10863	broad.mit.edu	37	8	24211322	24211322	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:24211322G>A	uc003xdy.2	+	22	2367	c.2284G>A	c.(2284-2286)GAT>AAT	p.D762N	ADAM28_uc011laa.1_RNA|ADAM28_uc010lua.2_Intron	NM_014265	NP_055080	Q9UKQ2	ADA28_HUMAN	ADAM metallopeptidase domain 28 isoform 1	762	Cytoplasmic (Potential).				proteolysis|spermatogenesis	extracellular region|integral to membrane|plasma membrane	metalloendopeptidase activity|zinc ion binding			skin(3)|lung(1)|central_nervous_system(1)	5		Prostate(55;0.0959)		Colorectal(74;0.0129)|COAD - Colon adenocarcinoma(73;0.0434)|BRCA - Breast invasive adenocarcinoma(99;0.175)		TGTTTTCAAGGATAATCCAGT	0.368000													64	146					0	0	1	0	0
RNF5P1	286140	broad.mit.edu	37	8	38458414	38458415	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:38458414_38458415GG>AA	uc003xly.2	-	1	361_362	c.304_305CC>TT	c.(304-306)CCA>TTA	p.P102L		NR_003129				SubName: Full=Putative uncharacterized protein RNF5;												0						CTCTGGAGCTGGTCTCTGGCCC	0.569000													4	47					0	0	1	0	0
HTRA4	203100	broad.mit.edu	37	8	38845473	38845473	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:38845473C>T	uc003xmj.2	+	9	1402	c.1287C>T	c.(1285-1287)CAC>CAT	p.H429H		NM_153692	NP_710159	P83105	HTRA4_HUMAN	HtrA serine peptidase 4 precursor	429	PDZ.				proteolysis|regulation of cell growth	extracellular region	insulin-like growth factor binding|serine-type endopeptidase activity				0		all_lung(54;0.0344)|Hepatocellular(245;0.0512)|Lung NSC(58;0.0955)	LUSC - Lung squamous cell carcinoma(45;1.5e-07)			TGAGAGATCACGATGTAATTG	0.358000													6	33					0	0	1	0	0
CHRNB3	1142	broad.mit.edu	37	8	42587523	42587523	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:42587523C>T	uc003xpi.1	+	5	1201	c.1073C>T	c.(1072-1074)TCC>TTC	p.S358F		NM_000749	NP_000740	Q05901	ACHB3_HUMAN	cholinergic receptor, nicotinic, beta	358	Cytoplasmic (Potential).				synaptic transmission, cholinergic	cell junction|nicotinic acetylcholine-gated receptor-channel complex|postsynaptic membrane	nicotinic acetylcholine-activated cation-selective channel activity|receptor activity			ovary(1)	1	all_lung(13;5.7e-12)|Lung NSC(13;1.6e-10)|Ovarian(28;0.00579)|Prostate(17;0.0119)|Lung SC(25;0.184)	all_lung(54;0.00026)|Lung NSC(58;0.000992)|Hepatocellular(245;0.0524)|Renal(179;0.0822)|Esophageal squamous(32;0.0954)	Lung(22;0.0199)|LUSC - Lung squamous cell carcinoma(45;0.0869)			CGCTACTCATCCCCAGAGAAA	0.438000													8	40					0	0	1	0	0
NPBWR1	2831	broad.mit.edu	37	8	53853390	53853390	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:53853390C>T	uc011ldu.1	+	1	923	c.923C>T	c.(922-924)GCC>GTC	p.A308V		NM_005285	NP_005276	P48145	NPBW1_HUMAN	G protein-coupled receptor 7	308	Cytoplasmic (Potential).				synaptic transmission	plasma membrane	opioid receptor activity|protein binding			ovary(2)|breast(1)	3		Lung NSC(129;0.0222)|all_epithelial(80;0.0301)|all_lung(136;0.0431)				TTCCTCTACGCCTTCCTGGAC	0.652000													6	52					0	0	1	0	0
RP1	6101	broad.mit.edu	37	8	55539455	55539455	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:55539455C>T	uc003xsd.1	+	4	3161	c.3013C>T	c.(3013-3015)CAT>TAT	p.H1005Y	RP1_uc011ldy.1_Intron	NM_006269	NP_006260	P56715	RP1_HUMAN	retinitis pigmentosa RP1 protein	1005					axoneme assembly|intracellular signal transduction|photoreceptor cell maintenance|photoreceptor cell outer segment organization|phototransduction, visible light|retinal cone cell development|retinal rod cell development	cilium axoneme|cytoplasm|microtubule|microtubule associated complex|photoreceptor connecting cilium|photoreceptor inner segment|photoreceptor outer segment	microtubule binding			skin(7)|ovary(4)|pancreas(1)	12		all_lung(136;0.0831)|Lung NSC(129;0.109)|all_epithelial(80;0.123)	OV - Ovarian serous cystadenocarcinoma(7;4.4e-07)|Epithelial(17;3.37e-05)|all cancers(17;0.000285)			AGAAGATCTCCATGAGACACA	0.373000													98	198					0	0	1	0	0
LYN	4067	broad.mit.edu	37	8	56864630	56864630	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:56864630G>A	uc003xsk.3	+	7	875	c.593G>A	c.(592-594)CGA>CAA	p.R198Q	LYN_uc003xsl.3_Missense_Mutation_p.R177Q	NM_002350	NP_002341	P07948	LYN_HUMAN	Yamaguchi sarcoma viral (v-yes-1) oncogene	198	SH2.				erythrocyte differentiation|interspecies interaction between organisms|leukocyte migration|platelet activation|positive regulation of cellular component movement|positive regulation of stress-activated protein kinase signaling cascade|positive regulation of tyrosine phosphorylation of STAT protein|response to DNA damage stimulus|T cell costimulation	cytosol|Golgi apparatus|membrane raft|nucleus|perinuclear region of cytoplasm	ATP binding|ion channel binding|non-membrane spanning protein tyrosine kinase activity|receptor signaling protein tyrosine kinase activity			ovary(1)|breast(1)|central_nervous_system(1)	3		all_lung(136;0.0555)|Lung NSC(129;0.0726)|all_epithelial(80;0.0772)	Epithelial(17;0.000834)|all cancers(17;0.00598)			ATCTCTCCACGAATCACTTTT	0.358000													18	35					0	0	1	0	0
FAM164A	51101	broad.mit.edu	37	8	79598800	79598800	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:79598800G>T	uc003ybd.2	+	4	411	c.309G>T	c.(307-309)GAG>GAT	p.E103D		NM_016010	NP_057094	Q96GY0	F164A_HUMAN	hypothetical protein LOC51101	103										ovary(1)	1						CCCTCAAAGAGGGTGGCAAAC	0.413000													3	45					1	1	1	1	0
WWP1	11059	broad.mit.edu	37	8	87460461	87460461	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:87460461G>A	uc003ydt.2	+	19	2363	c.2083G>A	c.(2083-2085)GAT>AAT	p.D695N	WWP1_uc010mai.2_Missense_Mutation_p.D471N	NM_007013	NP_008944	Q9H0M0	WWP1_HUMAN	WW domain containing E3 ubiquitin protein ligase	695	HECT.				central nervous system development|entry of virus into host cell|negative regulation of transcription, DNA-dependent|protein ubiquitination involved in ubiquitin-dependent protein catabolic process|signal transduction	cytoplasm|nucleus|plasma membrane|ubiquitin ligase complex	protein binding|ubiquitin-protein ligase activity			lung(1)|liver(1)	2						TACTATTAAGGATTTGGAATC	0.294000													7	18					0	0	1	0	0
TSPYL5	85453	broad.mit.edu	37	8	98288963	98288963	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:98288963G>A	uc003yhy.2	-	1	1214	c.1110C>T	c.(1108-1110)AAC>AAT	p.N370N		NM_033512	NP_277047	Q86VY4	TSYL5_HUMAN	TSPY-like 5	370					cellular response to gamma radiation|nucleosome assembly|positive regulation of cell proliferation|positive regulation of protein kinase B signaling cascade|positive regulation of protein ubiquitination|regulation of growth	nucleus	protein binding			large_intestine(1)|ovary(1)	2	Breast(36;2.56e-06)					ACAATTCTTCGTTGATTATCT	0.468000													49	186					0	0	1	0	0
DPYS	1807	broad.mit.edu	37	8	105405171	105405171	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:105405171G>A	uc003yly.3	-	8	1413	c.1284C>T	c.(1282-1284)TTC>TTT	p.F428F	DPYS_uc010mcf.1_5'UTR	NM_001385	NP_001376	Q14117	DPYS_HUMAN	dihydropyrimidinase	428					protein homotetramerization|pyrimidine nucleoside catabolic process|thymine catabolic process|uracil catabolic process	cytosol	dihydropyrimidinase activity|zinc ion binding			upper_aerodigestive_tract(1)|ovary(1)	2			OV - Ovarian serous cystadenocarcinoma(57;1.61e-06)|STAD - Stomach adenocarcinoma(118;0.229)			CCATGCCCTCGAAAATGTTGA	0.448000													27	131					0	0	1	0	0
ZFPM2	23414	broad.mit.edu	37	8	106814745	106814745	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:106814745C>T	uc003ymd.2	+	8	2458	c.2435C>T	c.(2434-2436)TCC>TTC	p.S812F	ZFPM2_uc011lhs.1_Missense_Mutation_p.S543F	NM_012082	NP_036214	Q8WW38	FOG2_HUMAN	zinc finger protein, multitype 2	812					blood coagulation|negative regulation of fat cell differentiation|outflow tract septum morphogenesis|right ventricular cardiac muscle tissue morphogenesis|ventricular septum morphogenesis	nucleoplasm	DNA binding|RNA polymerase II transcription coactivator activity|transcription corepressor activity|transcription factor binding|zinc ion binding	p.S812fs*0(1)		ovary(4)|large_intestine(1)	5			OV - Ovarian serous cystadenocarcinoma(57;8.28e-08)			GTTCCAGTTTCCAAATGTGAT	0.458000													4	17					0	0	1	0	0
TRHR	7201	broad.mit.edu	37	8	110100022	110100022	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:110100022G>A	uc003ymz.3	+	1	297	c.281G>A	c.(280-282)GGC>GAC	p.G94D		NM_003301	NP_003292	P34981	TRFR_HUMAN	thyrotropin-releasing hormone receptor	94	Extracellular (Potential).					integral to plasma membrane	thyrotropin-releasing hormone receptor activity			skin(2)|lung(1)	3			OV - Ovarian serous cystadenocarcinoma(57;2.3e-11)			TGGGTCTATGGCTATGTTGGA	0.478000													17	131					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110441663	110441663	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:110441663T>A	uc003yne.2	+	26	3199	c.3095T>A	c.(3094-3096)CTA>CAA	p.L1032Q		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1032	Extracellular (Potential).				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			CTTGGAGACCTACTTCGTACA	0.323000										HNSCC(38;0.096)			10	11					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110453608	110453608	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:110453608G>A	uc003yne.2	+	34	4308	c.4204G>A	c.(4204-4206)GTA>ATA	p.V1402I		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	1402	Extracellular (Potential).|IPT/TIG 7.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			GAAAGATTCAGGTATCAGCCA	0.274000										HNSCC(38;0.096)			5	16					0	0	1	0	0
PKHD1L1	93035	broad.mit.edu	37	8	110502237	110502237	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:110502237G>A	uc003yne.2	+	60	10041	c.9937G>A	c.(9937-9939)GAT>AAT	p.D3313N		NM_177531	NP_803875	Q86WI1	PKHL1_HUMAN	fibrocystin L precursor	3313	Extracellular (Potential).|PbH1 5.				immune response	cytosol|extracellular space|integral to membrane	receptor activity			ovary(9)|central_nervous_system(2)|large_intestine(1)|breast(1)|pancreas(1)	14			OV - Ovarian serous cystadenocarcinoma(57;9.88e-13)			AGGCTTCAGGGATAGCACAGA	0.279000										HNSCC(38;0.096)			10	37					0	0	1	0	0
CSMD3	114788	broad.mit.edu	37	8	113518937	113518937	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:113518937G>A	uc003ynu.2	-	29	5037	c.4878C>T	c.(4876-4878)ATC>ATT	p.I1626I	CSMD3_uc003yns.2_Silent_p.I898I|CSMD3_uc003ynt.2_Silent_p.I1586I|CSMD3_uc011lhx.1_Silent_p.I1522I	NM_198123	NP_937756	Q7Z407	CSMD3_HUMAN	CUB and Sushi multiple domains 3 isoform 1	1626	Extracellular (Potential).|CUB 9.					integral to membrane|plasma membrane				ovary(21)|lung(11)|skin(11)|kidney(8)|large_intestine(6)|upper_aerodigestive_tract(2)|central_nervous_system(2)|urinary_tract(1)|breast(1)	63						ACGCCAAGGAGATAACATAGT	0.383000										HNSCC(6;0.00088)|TCGA Ovarian(7;0.080)			25	110					0	0	1	0	0
ENPP2	5168	broad.mit.edu	37	8	120650760	120650760	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:120650760G>A	uc003yot.1	-	2	127	c.41C>T	c.(40-42)TCC>TTC	p.S14F	ENPP2_uc003yos.1_Missense_Mutation_p.S14F|ENPP2_uc010mdd.1_Missense_Mutation_p.S14F	NM_001040092	NP_001035181	Q13822	ENPP2_HUMAN	autotaxin isoform 2 preproprotein	14					cellular component movement|chemotaxis|G-protein coupled receptor protein signaling pathway|immune response|phosphate metabolic process|phosphatidylcholine catabolic process|regulation of cell migration	extracellular space|integral to plasma membrane	alkylglycerophosphoethanolamine phosphodiesterase activity|calcium ion binding|lysophospholipase activity|nucleic acid binding|nucleotide diphosphatase activity|phosphodiesterase I activity|polysaccharide binding|scavenger receptor activity|transcription factor binding|zinc ion binding			ovary(2)|central_nervous_system(2)|upper_aerodigestive_tract(1)|large_intestine(1)|kidney(1)	7	Lung NSC(37;5.03e-06)|Ovarian(258;0.0249)|Hepatocellular(40;0.161)		STAD - Stomach adenocarcinoma(47;0.00185)			AGTGAACAGGGATATTATCTA	0.398000													32	138					0	0	1	0	0
FER1L6	654463	broad.mit.edu	37	8	125109543	125109543	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:125109543C>T	uc003yqw.2	+	36	4933	c.4727C>T	c.(4726-4728)CCC>CTC	p.P1576L	uc003yqy.1_Intron	NM_001039112	NP_001034201	Q2WGJ9	FR1L6_HUMAN	fer-1-like 6	1576	Cytoplasmic (Potential).					integral to membrane				ovary(5)|skin(5)|central_nervous_system(1)	11	Lung NSC(37;4.1e-12)|Ovarian(258;0.00438)|all_neural(195;0.0741)		STAD - Stomach adenocarcinoma(47;0.00186)			GACATGTTTCCCAAGGATATG	0.507000													17	125					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131916201	131916201	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:131916201G>A	uc003ytd.3	-	7	1984	c.1728C>T	c.(1726-1728)TTC>TTT	p.F576F	ADCY8_uc010mds.2_Silent_p.F576F	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	576	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GCTTCCTCAGGAATTCATTCC	0.468000										HNSCC(32;0.087)			74	140					0	0	1	0	0
ADCY8	114	broad.mit.edu	37	8	131922068	131922068	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:131922068C>T	uc003ytd.3	-	6	1782	c.1526G>A	c.(1525-1527)GGA>GAA	p.G509E	ADCY8_uc010mds.2_Missense_Mutation_p.G509E	NM_001115	NP_001106	P40145	ADCY8_HUMAN	adenylate cyclase 8	509	Cytoplasmic (Potential).				activation of adenylate cyclase activity by G-protein signaling pathway|activation of phospholipase C activity|activation of protein kinase A activity|cellular response to glucagon stimulus|energy reserve metabolic process|inhibition of adenylate cyclase activity by G-protein signaling pathway|nerve growth factor receptor signaling pathway|synaptic transmission|transmembrane transport|water transport	integral to membrane|membrane fraction|plasma membrane	ATP binding|calcium- and calmodulin-responsive adenylate cyclase activity|metal ion binding			skin(4)|large_intestine(1)|central_nervous_system(1)	6	Esophageal squamous(12;0.00693)|Ovarian(258;0.00707)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.000538)			GGAGTGGATTCCAATCCTCAT	0.473000										HNSCC(32;0.087)			22	115					0	0	1	0	0
COL22A1	169044	broad.mit.edu	37	8	139791802	139791802	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:139791802C>T	uc003yvd.2	-	14	2101	c.1654G>A	c.(1654-1656)GAG>AAG	p.E552K		NM_152888	NP_690848	Q8NFW1	COMA1_HUMAN	collagen, type XXII, alpha 1	552	Pro-rich.|Gly-rich.|Collagen-like 2.				cell adhesion	collagen|cytoplasm	structural molecule activity			ovary(11)|pancreas(1)|skin(1)	13	all_epithelial(106;1.55e-12)|Lung NSC(106;1.67e-05)|all_lung(105;3.39e-05)|Ovarian(258;0.00672)|Acute lymphoblastic leukemia(118;0.155)		BRCA - Breast invasive adenocarcinoma(115;0.0517)			TCTCCTGGCTCCCCCTGAACA	0.622000										HNSCC(7;0.00092)			20	97					0	0	1	0	0
TRAPPC9	83696	broad.mit.edu	37	8	141445244	141445244	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:141445244G>A	uc003yvj.2	-	4	960	c.826C>T	c.(826-828)CTT>TTT	p.L276F	TRAPPC9_uc003yvh.2_Missense_Mutation_p.L374F|TRAPPC9_uc003yvi.1_Missense_Mutation_p.L276F	NM_001160372	NP_001153844	Q96Q05	TPPC9_HUMAN	trafficking protein particle complex 9 isoform	276					cell differentiation	endoplasmic reticulum|Golgi apparatus				skin(2)	2						TCAGCAGGAAGGGTGCTGCCC	0.532000													15	61					0	0	1	0	0
SCRIB	23513	broad.mit.edu	37	8	144874735	144874735	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:144874735G>A	uc003yzp.1	-	31	4255	c.4248C>T	c.(4246-4248)CTC>CTT	p.L1416L	SCRIB_uc003yzn.1_Silent_p.L149L|SCRIB_uc003yzo.1_Silent_p.L1416L	NM_015356	NP_056171	Q14160	SCRIB_HUMAN	scribble isoform b	1416	Potential.				activation of Rac GTPase activity|apoptosis involved in morphogenesis|cell migration|cell proliferation|cell-cell adhesion|establishment of apical/basal cell polarity|interspecies interaction between organisms|mammary gland duct morphogenesis|negative regulation of mitotic cell cycle|positive chemotaxis|positive regulation of apoptosis|positive regulation of receptor recycling|protein localization to adherens junction	cell-cell adherens junction|Scrib-APC-beta-catenin complex	protein binding			urinary_tract(1)|ovary(1)|kidney(1)|central_nervous_system(1)|pancreas(1)	5	all_cancers(97;2.31e-11)|all_epithelial(106;1.58e-09)|Lung NSC(106;0.00013)|all_lung(105;0.000374)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)		OV - Ovarian serous cystadenocarcinoma(54;2.46e-41)|Epithelial(56;1.23e-39)|all cancers(56;1.12e-34)|Colorectal(110;0.055)|BRCA - Breast invasive adenocarcinoma(115;0.18)			CGTCCAGGGCGAGCCTCGCTT	0.692000													5	6					0	0	1	0	0
ARHGAP39	80728	broad.mit.edu	37	8	145755806	145755806	+	Nonstop_Mutation	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:145755806C>A	uc003zdt.1	-	12	3807	c.3252G>T	c.(3250-3252)TAG>TAT	p.*1084Y	LRRC24_uc003zdn.2_5'Flank|MGC70857_uc003zdp.1_5'Flank|MGC70857_uc003zdq.1_5'Flank|MGC70857_uc003zdr.1_5'Flank|ARHGAP39_uc011llk.1_Nonstop_Mutation_p.*1084Y|ARHGAP39_uc003zds.1_Nonstop_Mutation_p.*1115Y	NM_025251	NP_079527	Q9C0H5	RHG39_HUMAN	KIAA1688 protein	1084					axon guidance|regulation of small GTPase mediated signal transduction|small GTPase mediated signal transduction	cytoskeleton|cytosol|nucleus	GTPase activator activity				0						GGCGCCCCCGCTACAGCACAC	0.687000													7	22					0.000274275	0.0002765	1	1	0
ZNF16	7564	broad.mit.edu	37	8	146156267	146156267	+	Missense_Mutation	SNP	T	C	C	rs34677674		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr8:146156267T>C	uc003zet.2	-	4	2093	c.1906A>G	c.(1906-1908)AAA>GAA	p.K636E	ZNF16_uc003zeu.2_Missense_Mutation_p.K636E	NM_001029976	NP_001025147	P17020	ZNF16_HUMAN	zinc finger protein 16	636	C2H2-type 16.				regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	DNA binding|zinc ion binding			ovary(5)	5	all_cancers(97;8.72e-12)|all_epithelial(106;1.07e-10)|Lung NSC(106;7.18e-05)|all_lung(105;0.00021)|Ovarian(258;0.0173)|Acute lymphoblastic leukemia(118;0.155)	Acute lymphoblastic leukemia(644;0.136)	Epithelial(56;3.45e-38)|all cancers(56;3.04e-33)|BRCA - Breast invasive adenocarcinoma(115;0.0424)|Colorectal(110;0.055)	GBM - Glioblastoma multiforme(99;0.02)|KIRC - Kidney renal clear cell carcinoma(644;0.0486)		CTGAAGGCTTTCCCACACTCA	0.552000													24	95					0	0	1	0	0
KIAA1432	57589	broad.mit.edu	37	9	5757382	5757382	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:5757382C>T	uc003zji.2	+	16	1779	c.1686C>T	c.(1684-1686)TTC>TTT	p.F562F	KIAA1432_uc003zjh.2_Silent_p.F562F|KIAA1432_uc003zjl.3_Silent_p.F525F|KIAA1432_uc003zjj.1_Silent_p.F104F	NM_020829	NP_065880	Q4ADV7	RIC1_HUMAN	connexin 43-interacting protein 150 isoform a	641						integral to membrane					0		Acute lymphoblastic leukemia(23;0.154)		GBM - Glioblastoma multiforme(50;0.000525)|Lung(218;0.122)		CTCACCCTTTCCTGGTGGTAT	0.433000													95	89					0	0	1	0	0
CDKN2A	1029	broad.mit.edu	37	9	21971096	21971096	+	Missense_Mutation	SNP	C	T	T	rs121913384		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:21971096C>T	uc003zpk.2	-	2	474	c.262G>A	c.(262-264)GAG>AAG	p.E88K	MTAP_uc003zpi.1_Intron|CDKN2A_uc003zpj.2_3'UTR|CDKN2A_uc010miu.2_RNA|CDKN2A_uc003zpl.2_Missense_Mutation_p.G143E	NM_000077	NP_000068	P42771	CD2A1_HUMAN	cyclin-dependent kinase inhibitor 2A isoform 1	88	ANK 3.		E -> D (in a biliary tract tumor).		cell cycle arrest|cell cycle checkpoint|G1 phase of mitotic cell cycle|G1/S transition of mitotic cell cycle|induction of apoptosis|negative regulation of cell growth|negative regulation of cell proliferation|negative regulation of cell-matrix adhesion|negative regulation of cyclin-dependent protein kinase activity|negative regulation of NF-kappaB transcription factor activity|positive regulation of macrophage apoptosis|positive regulation of smooth muscle cell apoptosis|Ras protein signal transduction|replicative senescence	cytosol|nucleus	cyclin-dependent protein kinase inhibitor activity|NF-kappaB binding|protein binding|protein binding|protein kinase binding	p.0?(1112)|p.?(13)|p.E88*(13)|p.E88E(6)|p.E88K(3)|p.H83fs*2(2)|p.E88D(2)|p.E88A(1)|p.E88G(1)|p.D84_F90del(1)|p.V82_E88del(1)|p.V82_G89>G(1)|p.E61_L94del(1)|p.R137fs*48(1)|p.A68fs*3(1)|p.E88V(1)|p.E87K(1)		haematopoietic_and_lymphoid_tissue(647)|skin(419)|upper_aerodigestive_tract(414)|central_nervous_system(381)|lung(325)|pancreas(244)|oesophagus(230)|urinary_tract(225)|pleura(94)|liver(91)|soft_tissue(79)|bone(77)|ovary(76)|biliary_tract(71)|stomach(46)|breast(46)|kidney(39)|NS(28)|thyroid(24)|cervix(23)|meninges(18)|genital_tract(15)|endometrium(13)|prostate(11)|autonomic_ganglia(10)|salivary_gland(10)|large_intestine(9)|adrenal_gland(6)|eye(4)|vulva(2)|small_intestine(1)	3678		all_cancers(5;0)|Acute lymphoblastic leukemia(3;0)|all_hematologic(3;0)|all_epithelial(2;2.37e-290)|Lung NSC(2;1.26e-139)|all_lung(2;4.48e-131)|Glioma(2;3.26e-60)|all_neural(2;2.1e-52)|Renal(3;1.07e-46)|Esophageal squamous(3;3.83e-46)|Melanoma(2;2.74e-34)|Breast(3;1.14e-11)|Ovarian(3;0.000128)|Hepatocellular(5;0.00162)|Colorectal(97;0.172)		all cancers(2;0)|GBM - Glioblastoma multiforme(3;0)|Lung(2;4.07e-74)|Epithelial(2;1.08e-61)|LUSC - Lung squamous cell carcinoma(2;3.82e-48)|LUAD - Lung adenocarcinoma(2;4.56e-26)|OV - Ovarian serous cystadenocarcinoma(39;7.64e-10)|BRCA - Breast invasive adenocarcinoma(2;5.01e-09)|STAD - Stomach adenocarcinoma(4;4.63e-07)|Kidney(2;5.79e-07)|KIRC - Kidney renal clear cell carcinoma(2;7.27e-07)|COAD - Colon adenocarcinoma(8;5.15e-05)		AGGAAGCCCTCCCGGGCAGCG	0.756000	E88*(CAL33_UPPER_AERODIGESTIVE_TRACT)	17							Uveal_Melanoma_Familial|Familial_Malignant_Melanoma_and_Tumors_of_the_Nervous_System|Hereditary_Melanoma	HNSCC(2;<9.43e_08)|TSP Lung(5;3.83e-07)			18	16					0	0	1	0	0
TOPORS	10210	broad.mit.edu	37	9	32542037	32542037	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:32542037G>A	uc003zrb.2	-	3	2653	c.2486C>T	c.(2485-2487)TCA>TTA	p.S829L	TOPORS_uc003zrc.2_Missense_Mutation_p.S762L	NM_005802	NP_005793	Q9NS56	TOPRS_HUMAN	topoisomerase I binding, arginine/serine-rich	829	Interaction with TOP1.				DNA damage response, signal transduction resulting in induction of apoptosis|maintenance of protein location in nucleus|proteasomal ubiquitin-dependent protein catabolic process|protein sumoylation|transcription, DNA-dependent	nuclear speck|PML body	antigen binding|DNA binding|DNA topoisomerase I binding|SUMO ligase activity|ubiquitin-protein ligase activity|zinc ion binding			ovary(3)|upper_aerodigestive_tract(1)|skin(1)	5			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.0018)		CAATTTTGATGAAGATTTTTG	0.398000													37	34					0	0	1	0	0
TAF1L	138474	broad.mit.edu	37	9	32632552	32632552	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:32632552C>T	uc003zrg.1	-	1	3116	c.3026G>A	c.(3025-3027)GGA>GAA	p.G1009E	uc003zrh.1_5'Flank	NM_153809	NP_722516	Q8IZX4	TAF1L_HUMAN	TBP-associated factor RNA polymerase 1-like	1009					male meiosis|positive regulation of transcription, DNA-dependent|regulation of transcription from RNA polymerase II promoter|transcription initiation, DNA-dependent	transcription factor TFIID complex	DNA binding|histone acetyltransferase activity|protein serine/threonine kinase activity|TBP-class protein binding			lung(8)|skin(6)|central_nervous_system(4)|large_intestine(3)|ovary(2)|stomach(1)|breast(1)|pancreas(1)	26			LUSC - Lung squamous cell carcinoma(29;0.0181)	GBM - Glioblastoma multiforme(74;0.00301)		TGCATCTGTTCCTGTCACTGT	0.458000													101	103					0	0	1	0	0
NOL6	65083	broad.mit.edu	37	9	33463111	33463111	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:33463111G>A	uc003zsz.2	-	25	3312	c.3211C>T	c.(3211-3213)CTT>TTT	p.L1071F	SUGT1P1_uc010mjq.1_Intron|NOL6_uc003zsy.2_Missense_Mutation_p.L125F|NOL6_uc003zta.2_Intron|NOL6_uc010mjv.2_Missense_Mutation_p.L1068F|NOL6_uc011lob.1_Missense_Mutation_p.L1019F|NOL6_uc003ztb.1_Intron	NM_022917	NP_075068	Q9H6R4	NOL6_HUMAN	nucleolar protein family 6 alpha isoform	1071					rRNA processing	condensed nuclear chromosome|nucleolus	RNA binding			ovary(2)	2			LUSC - Lung squamous cell carcinoma(29;0.00788)	GBM - Glioblastoma multiforme(74;0.152)		TAGAAGAAAAGGGCCAGATCC	0.552000													5	8					0	0	1	0	0
NPR2	4882	broad.mit.edu	37	9	35792626	35792626	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:35792626C>T	uc003zyd.2	+	1	221	c.221C>T	c.(220-222)GCC>GTC	p.A74V	NPR2_uc010mlb.2_Missense_Mutation_p.A74V	NM_003995	NP_003986	P20594	ANPRB_HUMAN	natriuretic peptide receptor B precursor	74	Extracellular (Potential).				intracellular signal transduction|ossification|receptor guanylyl cyclase signaling pathway|regulation of blood pressure	integral to membrane|plasma membrane	GTP binding|guanylate cyclase activity|natriuretic peptide receptor activity|protein kinase activity|transmembrane receptor activity			ovary(2)|stomach(1)	3	all_epithelial(49;0.161)		LUSC - Lung squamous cell carcinoma(32;0.00521)|Lung(28;0.00697)|STAD - Stomach adenocarcinoma(86;0.194)		Erythrityl Tetranitrate(DB01613)|Nesiritide(DB04899)	CTGGAAGGCGCCTGCTCTGAG	0.662000													27	71					0	0	1	0	0
TRPM6	140803	broad.mit.edu	37	9	77455013	77455013	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:77455013C>T	uc004ajl.1	-	5	709	c.471G>A	c.(469-471)GAG>GAA	p.E157E	TRPM6_uc004ajk.1_Silent_p.E152E|TRPM6_uc010mpb.1_RNA|TRPM6_uc010mpc.1_Silent_p.E157E|TRPM6_uc010mpd.1_Silent_p.E157E|TRPM6_uc010mpe.1_Silent_p.E157E|TRPM6_uc004ajn.1_Silent_p.E157E	NM_017662	NP_060132	Q9BX84	TRPM6_HUMAN	transient receptor potential cation channel,	157	Cytoplasmic (Potential).				response to toxin	integral to membrane	ATP binding|calcium channel activity|metal ion binding|protein binding|protein serine/threonine kinase activity			lung(3)|stomach(2)|haematopoietic_and_lymphoid_tissue(1)|central_nervous_system(1)|skin(1)	8						GGCTGAAAATCTCTTTAAATT	0.373000													41	63					0	0	1	0	0
PRUNE2	158471	broad.mit.edu	37	9	79321324	79321324	+	Missense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:79321324G>T	uc010mpk.2	-	8	5990	c.5866C>A	c.(5866-5868)CAA>AAA	p.Q1956K	PRUNE2_uc004akj.3_5'Flank|PRUNE2_uc010mpl.1_5'Flank	NM_015225	NP_056040	Q8WUY3	PRUN2_HUMAN	prune homolog 2	1956					apoptosis|G1 phase|induction of apoptosis	cytoplasm	metal ion binding|pyrophosphatase activity				0						CACTGCTCTTGGGTAGGTGTT	0.453000													59	57					5.05997e-48	5.24693e-48	1	1	0
ROR2	4920	broad.mit.edu	37	9	94519598	94519598	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:94519598C>T	uc004arj.1	-	3	618	c.419G>A	c.(418-420)GGG>GAG	p.G140E	ROR2_uc004ari.1_5'UTR|ROR2_uc004ark.2_Missense_Mutation_p.G140E	NM_004560	NP_004551	Q01974	ROR2_HUMAN	receptor tyrosine kinase-like orphan receptor 2	140	Extracellular (Potential).|Ig-like C2-type.				negative regulation of cell proliferation|positive regulation of cell migration|transmembrane receptor protein tyrosine kinase signaling pathway	integral to plasma membrane	ATP binding|transmembrane receptor protein tyrosine kinase activity|Wnt-protein binding			lung(8)|central_nervous_system(5)|ovary(3)|large_intestine(2)|stomach(1)|breast(1)	20						GGTCTTCATCCCGTTGGTGGC	0.557000													52	65					0	0	1	0	0
MRPL50	54534	broad.mit.edu	37	9	104152888	104152888	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:104152888G>A	uc004bbe.2	-	2	382	c.337C>T	c.(337-339)CCT>TCT	p.P113S	MRPL50_uc011lvj.1_Missense_Mutation_p.P113S	NM_019051	NP_061924	Q8N5N7	RM50_HUMAN	mitochondrial ribosomal protein L50	113						mitochondrion|ribosome					0		Acute lymphoblastic leukemia(62;0.0559)				CTGGAGTTAGGGACTACATGA	0.413000													31	27					0	0	1	0	0
KIAA1958	158405	broad.mit.edu	37	9	115336899	115336899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:115336899C>T	uc004bgf.1	+	2	714	c.539C>T	c.(538-540)TCT>TTT	p.S180F	KIAA1958_uc011lwx.1_Missense_Mutation_p.S180F	NM_133465	NP_597722	Q8N8K9	K1958_HUMAN	hypothetical protein LOC158405	180										skin(1)	1						GTAGTCCCATCTTCCCTCCAT	0.443000													12	55					0	0	1	0	0
DFNB31	25861	broad.mit.edu	37	9	117228674	117228674	+	Splice_Site	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:117228674T>A	uc004biz.3	-	3	1487	c.838_splice	c.e3-1	p.V280_splice	DFNB31_uc004biy.3_Splice_Site|DFNB31_uc004bja.3_Splice_Site_p.V280_splice	NM_015404	NP_056219	Q9P202	WHRN_HUMAN	CASK-interacting protein CIP98 isoform 1						inner ear receptor stereocilium organization|retina homeostasis|sensory perception of light stimulus|sensory perception of sound	cytoplasm|growth cone|stereocilium				ovary(4)|central_nervous_system(1)|pancreas(1)	6						CAGGTTCACCTGTCAGAGGGA	0.612000													69	71					0	0	1	0	0
ASTN2	23245	broad.mit.edu	37	9	119568000	119568000	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:119568000G>A	uc004bjs.1	-	13	2408	c.2307C>T	c.(2305-2307)TTC>TTT	p.F769F	ASTN2_uc004bjr.1_Silent_p.F765F|ASTN2_uc004bjt.1_Silent_p.F718F	NM_198187	NP_937830	O75129	ASTN2_HUMAN	astrotactin 2 isoform c	769	Extracellular (Potential).					integral to membrane				skin(4)|ovary(3)|breast(1)|kidney(1)	9						GGGTATCATTGAATTTGGAGT	0.493000													77	103					0	0	1	0	0
DBC1	1620	broad.mit.edu	37	9	122004357	122004357	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:122004357G>A	uc004bkc.2	-	4	1003	c.547C>T	c.(547-549)CAT>TAT	p.H183Y	DBC1_uc004bkd.2_Missense_Mutation_p.H183Y	NM_014618	NP_055433	O60477	DBC1_HUMAN	deleted in bladder cancer 1 precursor	183	MACPF.				cell cycle arrest|cell death	cytoplasm	protein binding			skin(3)|ovary(2)|central_nervous_system(2)|large_intestine(1)	8						TGGATCTCATGAAGCCTCCTC	0.502000													45	55					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125154627	125154627	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:125154627G>A	uc004bmg.1	+	11	1739	c.1604G>A	c.(1603-1605)GGG>GAG	p.G535E	PTGS1_uc011lys.1_Missense_Mutation_p.G473E|PTGS1_uc010mwb.1_Missense_Mutation_p.G389E|PTGS1_uc004bmf.1_Missense_Mutation_p.G498E|PTGS1_uc004bmh.1_Missense_Mutation_p.G426E|PTGS1_uc011lyt.1_Missense_Mutation_p.G426E	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	535					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	GGTCTCCTAGGGAATCCCATC	0.517000													42	53					0	0	1	0	0
PTGS1	5742	broad.mit.edu	37	9	125154655	125154655	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:125154655G>A	uc004bmg.1	+	11	1767	c.1632G>A	c.(1630-1632)TGG>TGA	p.W544*	PTGS1_uc011lys.1_Nonsense_Mutation_p.W482*|PTGS1_uc010mwb.1_Nonsense_Mutation_p.W398*|PTGS1_uc004bmf.1_Nonsense_Mutation_p.W507*|PTGS1_uc004bmh.1_Nonsense_Mutation_p.W435*|PTGS1_uc011lyt.1_Nonsense_Mutation_p.W435*	NM_000962	NP_000953	P23219	PGH1_HUMAN	prostaglandin-endoperoxide synthase 1 isoform 1	544					cyclooxygenase pathway|hormone biosynthetic process|regulation of blood pressure|response to oxidative stress|xenobiotic metabolic process	endoplasmic reticulum membrane|Golgi apparatus|microsome|plasma membrane	heme binding|oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen|peroxidase activity|prostaglandin-endoperoxide synthase activity			ovary(1)|skin(1)	2					Acetaminophen(DB00316)|Aspirin(DB00945)|Balsalazide(DB01014)|Bromfenac(DB00963)|Ciclopirox(DB01188)|Diclofenac(DB00586)|Diflunisal(DB00861)|Dipyrone(DB04817)|Etodolac(DB00749)|Fenoprofen(DB00573)|Flurbiprofen(DB00712)|gamma-Homolinolenic acid(DB00154)|Ibuprofen(DB01050)|Icosapent(DB00159)|Indomethacin(DB00328)|Ketoprofen(DB01009)|Ketorolac(DB00465)|Lumiracoxib(DB01283)|Meclofenamic acid(DB00939)|Mefenamic acid(DB00784)|Mesalazine(DB00244)|Minoxidil(DB00350)|Nabumetone(DB00461)|Naproxen(DB00788)|Phenacetin(DB03783)|Piroxicam(DB00554)|Rofecoxib(DB00533)|Salicyclic acid(DB00936)|Salsalate(DB01399)|Sulindac(DB00605)|Suprofen(DB00870)|Tenoxicam(DB00469)|Tolmetin(DB00500)	CGGAGTACTGGAAGCCGAGCA	0.527000													50	56					0	0	1	0	0
FIBCD1	84929	broad.mit.edu	37	9	133780704	133780704	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:133780704C>T	uc004bzz.2	-	6	1288	c.1043G>A	c.(1042-1044)GGG>GAG	p.G348E	FIBCD1_uc011mcc.1_Missense_Mutation_p.G348E	NM_032843	NP_116232	Q8N539	FBCD1_HUMAN	fibrinogen C domain containing 1	348	Fibrinogen C-terminal.|Extracellular (Potential).				signal transduction	extracellular space|integral to membrane	chitin binding|metal ion binding|receptor binding				0	all_hematologic(7;0.0028)			OV - Ovarian serous cystadenocarcinoma(145;3.52e-05)|Epithelial(140;0.00019)		GCCGAAGCTCCCGTAGCGGGC	0.632000													10	27					0	0	1	0	0
NUP214	8021	broad.mit.edu	37	9	134074112	134074112	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:134074112C>T	uc004cag.2	+	29	5342	c.5231C>T	c.(5230-5232)TCC>TTC	p.S1744F	NUP214_uc004cah.2_Missense_Mutation_p.S1734F|NUP214_uc004cai.2_Missense_Mutation_p.S1174F|NUP214_uc010mzg.2_RNA|NUP214_uc011mcg.1_Missense_Mutation_p.S570F|NUP214_uc011mcf.1_Missense_Mutation_p.S521F|NUP214_uc010mzh.1_Missense_Mutation_p.S258F|NUP214_uc010mzi.1_Missense_Mutation_p.S258F	NM_005085	NP_005076	P35658	NU214_HUMAN	nucleoporin 214kDa	1744	Pro/Ser/Thr-rich.|11 X 3 AA approximate repeats.|11 X 5 AA approximate repeats.|18 X 4 AA approximate repeats.				carbohydrate metabolic process|glucose transport|mRNA metabolic process|protein export from nucleus|regulation of glucose transport|transmembrane transport|viral reproduction	cytosol|nuclear pore|nucleoplasm	protein binding			breast(7)|lung(3)|skin(3)|ovary(2)|central_nervous_system(1)	16	all_hematologic(7;0.0028)	Myeloproliferative disorder(178;0.204)		OV - Ovarian serous cystadenocarcinoma(145;3.42e-05)|Epithelial(140;0.000256)		AGTGTCTTTTCCTTCAGTCAG	0.587000			T	DEK|SET|ABL1	AML|T-ALL								54	47					0	0	1	0	0
PNPLA7	375775	broad.mit.edu	37	9	140358795	140358795	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr9:140358795G>A	uc004cnf.2	-	26	3415	c.3078C>T	c.(3076-3078)ATC>ATT	p.I1026I	C9orf167_uc011mew.1_Intron|PNPLA7_uc004cnd.1_Silent_p.I292I|PNPLA7_uc004cne.1_Silent_p.I292I|PNPLA7_uc011mfa.1_Silent_p.I434I|PNPLA7_uc010ncj.1_Silent_p.I1051I	NM_152286	NP_689499	Q6ZV29	PLPL7_HUMAN	patatin-like phospholipase domain containing 7	1026	Patatin.			SIFSVFKDQQIE -> WERAHLSPVRPQ (in Ref. 1; BAB15733).	lipid metabolic process	endoplasmic reticulum|integral to membrane|lysosomal membrane|microsome|mitochondrial membrane|nuclear membrane	hydrolase activity			skin(1)	1	all_cancers(76;0.126)			OV - Ovarian serous cystadenocarcinoma(145;0.000268)|Epithelial(140;0.000839)		GGTGCACCTCGATCTGCTGGT	0.647000													81	94					0	0	1	0	0
GLRA2	2742	broad.mit.edu	37	X	14622459	14622459	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:14622459C>T	uc010nep.2	+	6	849	c.517C>T	c.(517-519)CCC>TCC	p.P173S	GLRA2_uc010neq.2_Missense_Mutation_p.P173S|GLRA2_uc004cwe.3_Missense_Mutation_p.P173S|GLRA2_uc011mio.1_Missense_Mutation_p.P84S|GLRA2_uc011mip.1_Missense_Mutation_p.P151S	NM_001118885	NP_001112357	P23416	GLRA2_HUMAN	glycine receptor, alpha 2 isoform A	173	Extracellular (Probable).				neuropeptide signaling pathway	cell junction|chloride channel complex|integral to plasma membrane|postsynaptic membrane	extracellular-glycine-gated chloride channel activity|glycine binding|receptor activity|transmitter-gated ion channel activity			ovary(1)|lung(1)	2	Hepatocellular(33;0.128)				Ethanol(DB00898)|Glycine(DB00145)	CTTATCCTGTCCCATGGACTT	0.373000													50	92					0	0	1	0	0
FANCB	2187	broad.mit.edu	37	X	14861851	14861851	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:14861851C>T	uc004cwg.1	-	10	2686	c.2418G>A	c.(2416-2418)AGG>AGA	p.R806R	FANCB_uc004cwh.1_Silent_p.R806R	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	806					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					GGATATTTTCCCTTCTGTCTG	0.398000								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				20	93					0	0	1	0	0
FANCB	2187	broad.mit.edu	37	X	14862007	14862007	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:14862007G>A	uc004cwg.1	-	10	2530	c.2262C>T	c.(2260-2262)TTC>TTT	p.F754F	FANCB_uc004cwh.1_Silent_p.F754F	NM_001018113	NP_001018123	Q8NB91	FANCB_HUMAN	Fanconi anemia complementation group B	754					DNA repair	nucleoplasm				lung(1)	1	Hepatocellular(33;0.183)					TATCAATTAGGAAATTCTCAC	0.348000								Involved_in_tolerance_or_repair_of_DNA_crosslinks	Fanconi_Anemia				21	43					0	0	1	0	0
SMPX	23676	broad.mit.edu	37	X	21761899	21761899	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:21761899C>T	uc004daa.2	-	3	284	c.101G>A	c.(100-102)AGA>AAA	p.R34K		NM_014332	NP_055147	Q9UHP9	SMPX_HUMAN	small muscle protein, X-linked	34					striated muscle contraction						0						TTCTTTTCTTCTGGGGGGTTG	0.448000													42	74					0	0	1	0	0
SMS	6611	broad.mit.edu	37	X	21996131	21996131	+	Nonsense_Mutation	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:21996131G>T	uc004dag.2	+	6	660	c.559G>T	c.(559-561)GAA>TAA	p.E187*	SMS_uc011mjq.1_Nonsense_Mutation_p.E91*|SMS_uc004daf.1_Nonsense_Mutation_p.E134*|SMS_uc010nfs.2_5'Flank|SMS_uc010nft.2_5'Flank	NM_004595	NP_004586	P52788	SPSY_HUMAN	spermine synthase	187					methionine metabolic process|spermine biosynthetic process	cytosol	spermidine synthase activity|spermine synthase activity			ovary(1)	1					Spermine(DB00127)	CAGTGGCAAAGAAGATTACAC	0.448000													26	176					4.3181e-19	4.44585e-19	1	1	0
PCYT1B	9468	broad.mit.edu	37	X	24608280	24608280	+	Missense_Mutation	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:24608280C>A	uc004dbi.2	-	4	579	c.346G>T	c.(346-348)GAT>TAT	p.D116Y	PCYT1B_uc004dbk.3_Missense_Mutation_p.D116Y|PCYT1B_uc004dbj.2_Missense_Mutation_p.D98Y	NM_004845	NP_004836	Q9Y5K3	PCY1B_HUMAN	choline phosphate cytidylyltransferase 1 beta	116	Catalytic (Potential).					endoplasmic reticulum	choline-phosphate cytidylyltransferase activity				0					Choline(DB00122)	TGGGTGAGATCATCACTGCAA	0.483000													26	55					7.16026e-08	7.29441e-08	1	1	0
MAGEB6	158809	broad.mit.edu	37	X	26212181	26212181	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:26212181C>T	uc004dbr.2	+	2	367	c.218C>T	c.(217-219)CCT>CTT	p.P73L	MAGEB6_uc010ngc.1_5'UTR	NM_173523	NP_775794	Q8N7X4	MAGB6_HUMAN	melanoma antigen family B, 6	73	Ser-rich.									ovary(3)	3						ACTGGGTCTCCTGATGCAGTT	0.527000													35	43					0	0	1	0	0
CXorf21	80231	broad.mit.edu	37	X	30577571	30577571	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:30577571G>A	uc004dcg.1	-	3	1178	c.902C>T	c.(901-903)CCA>CTA	p.P301L		NM_025159	NP_079435	Q9HAI6	CX021_HUMAN	hypothetical protein LOC80231	301										ovary(1)	1						TCCTCTCTATGGATTTACATT	0.383000													24	57					0	0	1	0	0
FAM47A	158724	broad.mit.edu	37	X	34150082	34150082	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:34150082G>A	uc004ddg.2	-	1	347	c.314C>T	c.(313-315)TCC>TTC	p.S105F		NM_203408	NP_981953	Q5JRC9	FA47A_HUMAN	hypothetical protein LOC158724	105										ovary(4)|central_nervous_system(1)	5						AGAGAGCTTGGAAAATAGGGC	0.547000													52	55					0	0	1	0	0
FAM47C	442444	broad.mit.edu	37	X	37027131	37027131	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:37027131G>A	uc004ddl.1	+	1	662	c.648G>A	c.(646-648)GAG>GAA	p.E216E		NM_001013736	NP_001013758	Q5HY64	FA47C_HUMAN	hypothetical protein LOC442444	216										ovary(3)	3						AGCCTCCAGAGACTGGAGTGT	0.662000													16	66					0	0	1	0	0
MIR222	407007	broad.mit.edu	37	X	45606444	45606444	+	RNA	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:45606444C>T	hsa-mir-222|MI0000299	-			c.87C>T			uc011mle.1_5'Flank|MIR221_hsa-mir-221|MI0000298_5'Flank|uc011mlf.1_RNA																	0						CATCAGAGACCCAGTAGCCAG	0.428000													5	31					0	0	1	0	0
CHST7	56548	broad.mit.edu	37	X	46433603	46433603	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:46433603G>A	uc004dgt.2	+	1	412	c.237G>A	c.(235-237)GCG>GCA	p.A79A		NM_019886	NP_063939	Q9NS84	CHST7_HUMAN	chondroitin 6-sulfotransferase 7	79	Lumenal (Potential).				chondroitin sulfate biosynthetic process|N-acetylglucosamine metabolic process	Golgi membrane|integral to membrane	chondroitin 6-sulfotransferase activity|N-acetylglucosamine 6-O-sulfotransferase activity			breast(3)	3						AAGGGGGCGCGAACCAGTCTC	0.726000													3	9					0	0	1	0	0
SLC9A7	84679	broad.mit.edu	37	X	46491083	46491083	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:46491083C>T	uc004dgu.1	-	14	1683	c.1675G>A	c.(1675-1677)GTT>ATT	p.V559I		NM_032591	NP_115980	Q96T83	SL9A7_HUMAN	solute carrier family 9, member 7	559					regulation of pH	Golgi membrane|integral to membrane|recycling endosome membrane|trans-Golgi network	potassium:hydrogen antiporter activity|protein homodimerization activity|sodium:hydrogen antiporter activity			ovary(2)	2						TCAACACCAACTCTGAAAGTC	0.488000													11	40					0	0	1	0	0
UXT	8409	broad.mit.edu	37	X	47517189	47517189	+	Nonsense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:47517189G>A	uc004din.2	-	3	228	c.172C>T	c.(172-174)CGA>TGA	p.R58*	UXT_uc004dim.2_Nonsense_Mutation_p.R70*|LOC100133957_uc011mls.1_5'Flank|LOC100133957_uc011mlt.1_5'Flank	NM_004182	NP_004173	Q9UBK9	UXT_HUMAN	ubiquitously-expressed transcript isoform 2	58					centrosome organization|mitochondrion transport along microtubule|protein folding	centrosome|nucleus|prefoldin complex	beta-tubulin binding|microtubule binding|unfolded protein binding				0						ACCTGGAGTCGCTCAATGACA	0.483000													12	36					0	0	1	0	0
FTSJ1	24140	broad.mit.edu	37	X	48340019	48340019	+	Splice_Site	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:48340019G>A	uc004djo.1	+	9	895	c.572_splice	c.e9-1	p.E191_splice	FTSJ1_uc004djl.2_Splice_Site_p.E191_splice|FTSJ1_uc004djm.2_Splice_Site_p.E191_splice|FTSJ1_uc004djn.1_Splice_Site_p.E191_splice|FTSJ1_uc004djp.1_Splice_Site_p.E191_splice|FTSJ1_uc011mlw.1_Splice_Site_p.E54_splice	NM_012280	NP_036412	Q9UET6	RRMJ1_HUMAN	FtsJ homolog 1 isoform a						RNA methylation|rRNA processing		methyltransferase activity|nucleic acid binding				0						TCCCCTGGCAGAGGCCTTCGC	0.642000													8	33					0	0	1	0	0
CCNB3	85417	broad.mit.edu	37	X	50051624	50051624	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:50051624C>T	uc004dox.3	+	6	753	c.455C>T	c.(454-456)TCT>TTT	p.S152F	CCNB3_uc004doy.2_Missense_Mutation_p.S152F|CCNB3_uc004doz.2_Intron|CCNB3_uc010njq.2_Intron	NM_033031	NP_149020	Q8WWL7	CCNB3_HUMAN	cyclin B3 isoform 3	152					cell division|meiosis|regulation of cyclin-dependent protein kinase activity|regulation of G2/M transition of mitotic cell cycle	nucleus	protein kinase binding			ovary(4)|lung(3)|large_intestine(1)|pancreas(1)	9	Ovarian(276;0.236)					GAGGAGGCATCTCTCTTCAGA	0.408000													16	49					0	0	1	0	0
HUWE1	10075	broad.mit.edu	37	X	53654425	53654425	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:53654425G>A	uc004dsp.2	-	17	1827	c.1425C>T	c.(1423-1425)ATC>ATT	p.I475I		NM_031407	NP_113584	Q7Z6Z7	HUWE1_HUMAN	HECT, UBA and WWE domain containing 1	475					base-excision repair|cell differentiation|histone ubiquitination|protein monoubiquitination|protein polyubiquitination|protein ubiquitination involved in ubiquitin-dependent protein catabolic process	cytoplasm|nucleus	DNA binding|protein binding|ubiquitin-protein ligase activity			ovary(8)|large_intestine(4)|breast(4)|kidney(1)	17						TCTTTGGCTTGATCACAAACG	0.318000													37	161					0	0	1	0	0
TEX11	56159	broad.mit.edu	37	X	69844689	69844689	+	Missense_Mutation	SNP	T	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:69844689T>A	uc004dyl.2	-	20	1901	c.1739A>T	c.(1738-1740)AAG>ATG	p.K580M	TEX11_uc004dyk.2_Missense_Mutation_p.K255M|TEX11_uc004dym.2_Missense_Mutation_p.K565M	NM_001003811	NP_001003811	Q8IYF3	TEX11_HUMAN	testis expressed sequence 11 isoform 1	580							protein binding			ovary(3)|breast(1)|skin(1)	5	Renal(35;0.156)					GGTTACTTACTTTACAGCTGT	0.353000													8	31					0	0	1	0	0
ACRC	93953	broad.mit.edu	37	X	70823836	70823836	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:70823836G>A	uc004eae.2	+	8	1210	c.709G>A	c.(709-711)GAC>AAC	p.D237N	BCYRN1_uc011mpt.1_Intron	NM_052957	NP_443189	Q96QF7	ACRC_HUMAN	ACRC protein	237	Asp/Ser-rich.					nucleus				ovary(3)	3	Renal(35;0.156)					TGTTCCCGACGACAGCAGTGA	0.537000													91	380					0	0	1	0	0
ERCC6L	54821	broad.mit.edu	37	X	71427357	71427357	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:71427357C>T	uc004eaq.1	-	2	1357	c.1260G>A	c.(1258-1260)CGG>CGA	p.R420R	PIN4_uc004eao.1_Intron|ERCC6L_uc004eap.1_Silent_p.R297R	NM_017669	NP_060139	Q2NKX8	ERC6L_HUMAN	excision repair protein ERCC6-like	420					cell division|mitotic prometaphase	condensed chromosome kinetochore|cytosol	ATP binding|DNA binding|helicase activity|protein binding			ovary(3)	3	Renal(35;0.156)					AACAACAAGCCCGTGCAGACA	0.463000													21	122					0	0	1	0	0
KIAA2022	340533	broad.mit.edu	37	X	73960442	73960442	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:73960442G>A	uc004eby.2	-	3	4567	c.3950C>T	c.(3949-3951)TCC>TTC	p.S1317F		NM_001008537	NP_001008537	Q5QGS0	K2022_HUMAN	hypothetical protein LOC340533	1317					base-excision repair, gap-filling|DNA replication proofreading|DNA replication, removal of RNA primer|nucleotide-excision repair, DNA gap filling|regulation of mitotic cell cycle|S phase of mitotic cell cycle	delta DNA polymerase complex	3'-5'-exodeoxyribonuclease activity|DNA-directed DNA polymerase activity			ovary(7)|large_intestine(4)|skin(2)|upper_aerodigestive_tract(1)|central_nervous_system(1)	15						CAAGATATAGGAAGGCTCCTG	0.537000													44	85					0	0	1	0	0
FAM46D	169966	broad.mit.edu	37	X	79699004	79699004	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:79699004C>T	uc004edl.1	+	5	1300	c.966C>T	c.(964-966)CTC>CTT	p.L322L	FAM46D_uc004edm.1_Silent_p.L322L	NM_152630	NP_689843	Q8NEK8	FA46D_HUMAN	hypothetical protein LOC169966	322										lung(2)	2						GACAGATTCTCCACCTGATCA	0.403000													39	48					0	0	1	0	0
CYLC1	1538	broad.mit.edu	37	X	83128039	83128039	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:83128039C>T	uc004eei.1	+	4	344	c.323C>T	c.(322-324)ACC>ATC	p.T108I	CYLC1_uc004eeh.1_Missense_Mutation_p.T107I	NM_021118	NP_066941	P35663	CYLC1_HUMAN	cylicin, basic protein of sperm head	108					cell differentiation|multicellular organismal development|spermatogenesis	acrosomal matrix|cytoskeletal calyx	structural molecule activity			ovary(4)|skin(1)	5						ACTTCCAAAACCCATCTTAAA	0.358000													3	36					0	0	1	0	0
ZNF711	7552	broad.mit.edu	37	X	84502638	84502638	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:84502638C>T	uc004eeo.2	+	3	407	c.60C>T	c.(58-60)ACC>ACT	p.T20T	ZNF711_uc004eep.2_Silent_p.T20T|ZNF711_uc004eeq.2_Silent_p.T20T	NM_021998	NP_068838	Q9Y462	ZN711_HUMAN	zinc finger protein 711	20					positive regulation of transcription, DNA-dependent|transcription, DNA-dependent	nucleus	protein binding|sequence-specific DNA binding|zinc ion binding			ovary(3)|skin(1)	4						TGGCCCATACCATGATTATGC	0.363000													34	173					0	0	1	0	0
KLHL4	56062	broad.mit.edu	37	X	86887260	86887260	+	Missense_Mutation	SNP	A	C	C			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:86887260A>C	uc004efb.2	+	7	1557	c.1375A>C	c.(1375-1377)ATT>CTT	p.I459L	KLHL4_uc004efa.2_Missense_Mutation_p.I459L	NM_019117	NP_061990	Q9C0H6	KLHL4_HUMAN	kelch-like 4 isoform 1	459	Kelch 1.					cytoplasm|microtubule cytoskeleton|nucleolus	actin binding			ovary(2)|lung(1)|breast(1)|central_nervous_system(1)	5						TTGGCTACATATTGGCACCAT	0.378000													25	43					0	0	1	0	0
NGFRAP1	27018	broad.mit.edu	37	X	102632525	102632525	+	Nonsense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:102632525C>T	uc004eki.2	+	3	488	c.106C>T	c.(106-108)CGA>TGA	p.R36*	NGFRAP1_uc004ekh.2_Nonsense_Mutation_p.R26*|NGFRAP1_uc004ekj.1_Nonsense_Mutation_p.R36*	NM_206915	NP_996798	Q00994	BEX3_HUMAN	nerve growth factor receptor (TNFRSF16)	36					apoptosis|multicellular organismal development|nerve growth factor receptor signaling pathway	cytosol|nucleus	caspase regulator activity|metal ion binding				0						TGCAGGAAATCGACGGGGACA	0.522000													58	258					0	0	1	0	0
MCART6	401612	broad.mit.edu	37	X	103349140	103349140	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:103349140G>A	uc004elu.2	-	2	982	c.801C>T	c.(799-801)CTC>CTT	p.L267L		NM_001012755	NP_001012773	Q5H9E4	MCAR6_HUMAN	mitochondrial carrier triple repeat 6	267	Solcar 3.				transport	integral to membrane|mitochondrial inner membrane					0						GGTAGATCAGGAGCAGCTTTC	0.557000													5	48					0	0	1	0	0
TEX13A	56157	broad.mit.edu	37	X	104464985	104464985	+	Missense_Mutation	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:104464985C>T	uc004ema.2	-	2	209	c.97G>A	c.(97-99)GAG>AAG	p.E33K	IL1RAPL2_uc004elz.1_Intron|TEX13A_uc004emb.2_Missense_Mutation_p.E33K	NM_031274	NP_112564	Q9BXU3	TX13A_HUMAN	testis expressed sequence 13A	33						intracellular	zinc ion binding			ovary(2)	2						AGATAGAACTCGGGGCCTTTC	0.552000													27	50					0	0	1	0	0
IL1RAPL2	26280	broad.mit.edu	37	X	104984679	104984679	+	Missense_Mutation	SNP	A	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:104984679A>G	uc004elz.1	+	8	1799	c.1043A>G	c.(1042-1044)AAA>AGA	p.K348R		NM_017416	NP_059112	Q9NP60	IRPL2_HUMAN	interleukin 1 receptor accessory protein-like 2	348	Extracellular (Potential).				central nervous system development|innate immune response	integral to membrane	interleukin-1, Type II, blocking receptor activity			breast(2)|ovary(1)	3						TTGCTGCGTAAAAAGGGTATT	0.368000													5	57					0	0	1	0	0
MUM1L1	139221	broad.mit.edu	37	X	105450026	105450026	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:105450026G>A	uc004emf.1	+	4	1250	c.601G>A	c.(601-603)GAA>AAA	p.E201K	MUM1L1_uc004emg.1_Missense_Mutation_p.E201K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	201										ovary(2)|pancreas(1)|skin(1)	4						TTCACTTTCGGAAGATAATGA	0.383000													6	23					0	0	1	0	0
MUM1L1	139221	broad.mit.edu	37	X	105451268	105451268	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:105451268G>A	uc004emf.1	+	4	2492	c.1843G>A	c.(1843-1845)GAA>AAA	p.E615K	MUM1L1_uc004emg.1_Missense_Mutation_p.E615K	NM_152423	NP_689636	Q5H9M0	MUML1_HUMAN	melanoma associated antigen (mutated) 1-like 1	615										ovary(2)|pancreas(1)|skin(1)	4						ATATTTACAAGAAGTCTGCAA	0.318000													9	20					0	0	1	0	0
COL4A5	1287	broad.mit.edu	37	X	107924162	107924162	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:107924162G>A	uc004enz.1	+	45	4265	c.4063G>A	c.(4063-4065)GAA>AAA	p.E1355K	COL4A5_uc011mso.1_Missense_Mutation_p.E1352K|COL4A5_uc011msp.1_Missense_Mutation_p.E31K	NM_033380	NP_203699	P29400	CO4A5_HUMAN	type IV collagen alpha 5 isoform 2 precursor	1349	Triple-helical region.				axon guidance	collagen type IV	extracellular matrix structural constituent|protein binding			ovary(3)|central_nervous_system(1)	4						CCCTGAGGGGGAACCGGGACT	0.438000									Alport_syndrome_with_Diffuse_Leiomyomatosis				60	99					0	0	1	0	0
WDR44	54521	broad.mit.edu	37	X	117526915	117526915	+	Silent	SNP	T	G	G			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:117526915T>G	uc004eqn.2	+	4	932	c.507T>G	c.(505-507)CTT>CTG	p.L169L	WDR44_uc004eqo.2_Silent_p.L169L|WDR44_uc011mtr.1_Silent_p.L144L|WDR44_uc010nqi.2_5'UTR	NM_019045	NP_061918	Q5JSH3	WDR44_HUMAN	WD repeat domain 44 protein	169	Potential.|Binding activity.					cytosol|endosome membrane|Golgi apparatus|perinuclear region of cytoplasm				lung(2)|upper_aerodigestive_tract(1)|ovary(1)|pancreas(1)	5						TTAATGTGCTTGAAACTGAAA	0.383000													26	124					0	0	1	0	0
DOCK11	139818	broad.mit.edu	37	X	117676960	117676960	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:117676960G>A	uc004eqp.2	+	3	354	c.291G>A	c.(289-291)CAG>CAA	p.Q97Q		NM_144658	NP_653259	Q5JSL3	DOC11_HUMAN	dedicator of cytokinesis 11	97	Interaction with activated CDC42 (By similarity).				blood coagulation	cytosol	GTP binding			ovary(3)	3						AGAGGGCCCAGAGTTTATTTG	0.358000													14	62					0	0	1	0	0
GRIA3	2892	broad.mit.edu	37	X	122318444	122318444	+	Silent	SNP	C	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:122318444C>A	uc004etq.3	+	2	350	c.57C>A	c.(55-57)GTC>GTA	p.V19V	GRIA3_uc004etr.3_Silent_p.V19V|GRIA3_uc004ets.3_RNA|GRIA3_uc011muf.1_5'Flank|GRIA3_uc010nqs.1_Silent_p.V19V	NM_007325	NP_015564	P42263	GRIA3_HUMAN	glutamate receptor, ionotrophic, AMPA 3 isoform	19					glutamate signaling pathway|synaptic transmission	alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex|cell junction|endocytic vesicle membrane|postsynaptic membrane	alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity|extracellular-glutamate-gated ion channel activity			ovary(3)|central_nervous_system(1)|pancreas(1)	5					L-Glutamic Acid(DB00142)	TCTTTTTAGTCCTGGGGCTTT	0.577000													35	153					5.73435e-26	5.92504e-26	1	1	0
ELF4	2000	broad.mit.edu	37	X	129200779	129200780	+	Missense_Mutation	DNP	GG	AA	AA			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:129200779_129200780GG>AA	uc004evd.3	-	9	2293_2294	c.1908_1909CC>TT	c.(1906-1911)AGCCTT>AGTTTT	p.L637F	ELF4_uc004eve.3_Missense_Mutation_p.L637F	NM_001421	NP_001412	Q99607	ELF4_HUMAN	E74-like factor 4	637					natural killer cell proliferation|NK T cell proliferation|positive regulation of transcription from RNA polymerase II promoter	PML body	protein binding|sequence-specific DNA binding|sequence-specific DNA binding transcription factor activity			ovary(1)	1						CTTGTCAGAAGGCTCCCAGATG	0.584000			T	ERG	AML								49	223					0	0	1	0	0
IGSF1	3547	broad.mit.edu	37	X	130409706	130409706	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:130409706G>A	uc004ewd.2	-	16	3168	c.2930C>T	c.(2929-2931)CCC>CTC	p.P977L	IGSF1_uc004ewe.3_Missense_Mutation_p.P971L|IGSF1_uc004ewf.2_Missense_Mutation_p.P957L	NM_001555	NP_001546	Q8N6C5	IGSF1_HUMAN	immunoglobulin superfamily, member 1 isoform 1	977	Extracellular (Potential).|Ig-like C2-type 10.				regulation of transcription, DNA-dependent	extracellular region|integral to membrane	inhibin beta-A binding|inhibin beta-B binding			ovary(3)|lung(1)|central_nervous_system(1)	5						CACAGAACTGGGCTCAGCAAA	0.468000													120	166					0	0	1	0	0
GPC3	2719	broad.mit.edu	37	X	132888183	132888183	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:132888183G>A	uc004exe.1	-	3	548	c.358C>T	c.(358-360)CGC>TGC	p.R120C	GPC3_uc004exd.1_5'UTR|GPC3_uc010nrn.1_Missense_Mutation_p.R120C|GPC3_uc011mvh.1_Missense_Mutation_p.R104C|GPC3_uc010nro.1_Missense_Mutation_p.R66C|GPC3_uc010nrp.1_5'UTR	NM_004484	NP_004475	P51654	GPC3_HUMAN	glypican 3 isoform 2 precursor	120						extracellular space|integral to plasma membrane|proteinaceous extracellular matrix	heparan sulfate proteoglycan binding|peptidyl-dipeptidase inhibitor activity			lung(2)|prostate(1)|breast(1)|skin(1)	5	Acute lymphoblastic leukemia(192;0.000127)					TTGGCATGGCGAACAACAATT	0.363000			T|D|Mis|N|F|S			Wilms tumour			Simpson-Golabi-Behmel_syndrome				31	125					0	0	1	0	0
BRS3	680	broad.mit.edu	37	X	135574324	135574324	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:135574324C>T	uc004ezv.1	+	3	1139	c.990C>T	c.(988-990)CTC>CTT	p.L330L		NM_001727	NP_001718	P32247	BRS3_HUMAN	bombesin-like receptor 3	330	Helical; Name=7; (Potential).				adult feeding behavior|glucose metabolic process|regulation of blood pressure	integral to membrane|plasma membrane	bombesin receptor activity			ovary(1)	1	Acute lymphoblastic leukemia(192;0.000127)					CCTTTGCTCTCTACTGGCTGA	0.478000													35	208					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140969331	140969331	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:140969331G>A	uc011mwp.1	+	4	658	c.658G>A	c.(658-660)GGC>AGC	p.G220S		NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	220	MAGE 1.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CACATACACGGGCTACTTTCC	0.438000													75	100					0	0	1	0	0
MAGEC3	139081	broad.mit.edu	37	X	140985474	140985474	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:140985474C>T	uc011mwp.1	+	8	1788	c.1788C>T	c.(1786-1788)ATC>ATT	p.I596I	MAGEC3_uc004fbs.2_Missense_Mutation_p.P346S|MAGEC3_uc010nsj.2_Missense_Mutation_p.P346S	NM_138702	NP_619647	Q8TD91	MAGC3_HUMAN	melanoma antigen family C, 3 isoform 1	596	MAGE 2.									skin(2)|central_nervous_system(1)	3	Acute lymphoblastic leukemia(192;6.56e-05)					CCAGTATCATCCCTAGTGCCT	0.473000													25	122					0	0	1	0	0
FMR1NB	158521	broad.mit.edu	37	X	147088235	147088235	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:147088235G>A	uc004fcm.2	+	3	485	c.411G>A	c.(409-411)AGG>AGA	p.R137R		NM_152578	NP_689791	Q8N0W7	FMR1N_HUMAN	fragile X mental retardation 1 neighbor	137	P-type.|Extracellular (Potential).					integral to membrane				ovary(1)	1	Acute lymphoblastic leukemia(192;6.56e-05)					GCAATCTGAGGGAAAATCAGG	0.378000													23	109					0	0	1	0	0
IDS	3423	broad.mit.edu	37	X	148582539	148582539	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:148582539G>A	uc011mxe.1	-	4	646	c.448C>T	c.(448-450)CCG>TCG	p.P150S	IDS_uc011mxf.1_Missense_Mutation_p.P60S|IDS_uc011mxg.1_5'UTR|IDS_uc010nsu.1_Intron|IDS_uc004fcw.3_5'UTR|IDS_uc011mxh.1_Missense_Mutation_p.P150S|IDS_uc011mxi.1_RNA	NM_000202	NP_000193	P22304	IDS_HUMAN	iduronate-2-sulfatase isoform a precursor	150						lysosome	iduronate-2-sulfatase activity|metal ion binding				0	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					CAGCTATACGGAGAATCATCG	0.388000													12	103					0	0	1	0	0
MAGEA11	4110	broad.mit.edu	37	X	148798196	148798196	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:148798196C>T	uc004fdq.2	+	5	1152	c.1050C>T	c.(1048-1050)TTC>TTT	p.F350F	HSFX2_uc004fdl.2_Intron|HSFX1_uc004fdm.2_Intron|MAGEA11_uc004fdr.2_Silent_p.F321F	NM_005366	NP_005357	P43364	MAGAB_HUMAN	melanoma antigen family A, 11 isoform a	350	MAGE.					cytoplasm|nucleus	protein binding			ovary(2)	2	Acute lymphoblastic leukemia(192;6.56e-05)|Colorectal(9;0.0662)					GGGAGCACTTCCTCTTTGGGG	0.537000													41	270					0	0	1	0	0
PRRG3	79057	broad.mit.edu	37	X	150868507	150868507	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:150868507G>A	uc004few.1	+	3	437	c.47G>A	c.(46-48)CGA>CAA	p.R16Q		NM_024082	NP_076987	Q9BZD7	TMG3_HUMAN	proline rich Gla (G-carboxyglutamic acid) 3	16						extracellular region|integral to membrane	calcium ion binding			ovary(3)|skin(1)	4	Acute lymphoblastic leukemia(192;6.56e-05)					GTCCTGAAACGATTCCCTCGT	0.587000													6	72					0	0	1	0	0
MAGEA6	4105	broad.mit.edu	37	X	151869563	151869563	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:151869563G>A	uc004ffq.1	+	3	447	c.253G>A	c.(253-255)GAG>AAG	p.E85K	MAGEA6_uc004ffr.1_Missense_Mutation_p.E85K|MAGEA2_uc010nto.2_Intron	NM_005363	NP_005354	P43360	MAGA6_HUMAN	melanoma antigen family A, 6	85							protein binding				0	Acute lymphoblastic leukemia(192;6.56e-05)					CCAATCCTATGAGGACTCCAG	0.587000													19	57					0	0	1	0	0
SLC6A8	6535	broad.mit.edu	37	X	152958983	152958983	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:152958983C>T	uc004fib.3	+	7	1361	c.1083C>T	c.(1081-1083)TCC>TCT	p.S361S	SLC6A8_uc004fic.3_Silent_p.S351S|SLC6A8_uc011myx.1_Silent_p.S246S|SLC6A8_uc010nuj.2_RNA	NM_005629	NP_005620	P48029	SC6A8_HUMAN	solute carrier family 6 member 8 isoform 1	361	Helical; (Potential).				creatine metabolic process|muscle contraction	integral to plasma membrane	creatine:sodium symporter activity|neurotransmitter:sodium symporter activity			pancreas(1)	1	all_hematologic(71;4.25e-06)|Acute lymphoblastic leukemia(192;6.56e-05)				Creatine(DB00148)	TGGTCTTCTCCATCCTGGGCT	0.627000													27	99					0	0	1	0	0
L1CAM	3897	broad.mit.edu	37	X	153129835	153129835	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:153129835G>A	uc004fjb.2	-	24	3372	c.3264C>T	c.(3262-3264)ATC>ATT	p.I1088I	L1CAM_uc004fjc.2_Silent_p.I1088I|L1CAM_uc010nuo.2_Silent_p.I1083I	NM_000425	NP_000416	P32004	L1CAM_HUMAN	L1 cell adhesion molecule isoform 1 precursor	1088	Fibronectin type-III 5.|Extracellular (Potential).				axon guidance|blood coagulation|cell death|leukocyte migration	integral to membrane				ovary(8)|central_nervous_system(1)	9	all_cancers(53;6.72e-15)|all_epithelial(53;3.19e-09)|all_lung(58;3.39e-06)|all_hematologic(71;4.25e-06)|Lung NSC(58;4.7e-06)|Acute lymphoblastic leukemia(192;6.56e-05)					TAAACAAGTGGATCTCGTAGT	0.582000													49	185					0	0	1	0	0
TAZ	6901	broad.mit.edu	37	X	153649075	153649075	+	Splice_Site	SNP	G	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:153649075G>T	uc004fkx.2	+	10	1081	c.777_splice	c.e10+1	p.A259_splice	TAZ_uc004fky.2_Splice_Site_p.A245_splice|TAZ_uc004fkz.2_Splice_Site|TAZ_uc004fla.2_Splice_Site_p.A229_splice|TAZ_uc004flb.2_Splice_Site_p.A215_splice|TAZ_uc010nuy.2_Splice_Site_p.A263_splice|TAZ_uc004flc.3_Splice_Site_p.A229_splice	NM_000116	NP_000107	Q16635	TAZ_HUMAN	tafazzin isoform 1						cardiac muscle contraction|cardiac muscle tissue development|cardiolipin biosynthetic process|cristae formation|hemopoiesis|mitochondrial ATP synthesis coupled electron transport|mitochondrial respiratory chain complex I assembly|skeletal muscle tissue development	integral to membrane|mitochondrion	1-acylglycerophosphocholine O-acyltransferase activity				0	all_cancers(53;3.7e-16)|all_epithelial(53;2.97e-10)|all_lung(58;1.84e-07)|Lung NSC(58;5.84e-07)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)					CAAGTCGGCTGTGAGTTTCCT	0.657000													46	56					4.63999e-43	4.8057e-43	1	1	0
GAB3	139716	broad.mit.edu	37	X	153928316	153928316	+	Missense_Mutation	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:153928316G>A	uc004fmj.1	-	5	1133	c.1085C>T	c.(1084-1086)TCC>TTC	p.S362F	GAB3_uc004fmk.1_Missense_Mutation_p.S363F|GAB3_uc010nve.1_Missense_Mutation_p.S363F|GAB3_uc004fml.1_5'UTR	NM_080612	NP_542179	Q8WWW8	GAB3_HUMAN	Gab3 protein isoform 2	362										ovary(1)	1	all_cancers(53;8.15e-17)|all_epithelial(53;1.1e-10)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)					GTGTCTTAAGGATTGGCCTTC	0.393000													46	91					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154132188	154132188	+	Silent	SNP	G	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:154132188G>A	uc004fmt.2	-	18	6162	c.5991C>T	c.(5989-5991)CTC>CTT	p.L1997L	F8_uc010nvi.1_Silent_p.L156L	NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	1997	F5/8 type A 3.|Plastocyanin-like 6.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TACCTGGATAGAGATTGTACA	0.284000													26	150					0	0	1	0	0
F8	2157	broad.mit.edu	37	X	154159353	154159353	+	Silent	SNP	C	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chrX:154159353C>T	uc004fmt.2	-	14	2883	c.2712G>A	c.(2710-2712)CTG>CTA	p.L904L		NM_000132	NP_000123	P00451	FA8_HUMAN	coagulation factor VIII isoform a precursor	904	B.				acute-phase response|blood coagulation, intrinsic pathway|cell adhesion|platelet activation|platelet degranulation	extracellular space|plasma membrane|platelet alpha granule lumen	copper ion binding|oxidoreductase activity|protein binding			ovary(5)|large_intestine(2)|pancreas(2)|upper_aerodigestive_tract(1)|skin(1)	11	all_cancers(53;7.19e-17)|all_epithelial(53;9.83e-11)|all_lung(58;6.63e-07)|Lung NSC(58;2.08e-06)|all_hematologic(71;2.45e-06)|Acute lymphoblastic leukemia(192;6.56e-05)|Breast(217;0.176)|Renal(33;0.214)				Antihemophilic Factor(DB00025)|Coagulation Factor IX(DB00100)|Drotrecogin alfa(DB00055)	TTGTTGAAATCAGATTATTTG	0.368000													12	70					0	0	1	0	0
LRRIQ3	127255	broad.mit.edu	37	1	74575212	74575213	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:74575212_74575213insT	uc001dfy.3	-	5	924_925	c.732_733insA	c.(730-735)AAACAGfs	p.K244fs	LRRIQ3_uc001dfz.3_RNA	NM_001105659	NP_001099129	A6PVS8	LRIQ3_HUMAN	leucine-rich repeats and IQ motif containing 3	244_245				QQEKII -> TAGKNY (in Ref. 1; BAD18621).						ovary(2)	2						TTTTCCTGCTGTTTTTTTTTGT	0.327													8	119	---	---	---	---					
DUSP27	92235	broad.mit.edu	37	1	167095398	167095400	+	In_Frame_Del	DEL	GAG	-	-			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:167095398_167095400delGAG	uc001geb.1	+	5	1030_1032	c.1030_1032delGAG	c.(1030-1032)GAGdel	p.E348del		NM_001080426	NP_001073895	Q5VZP5	DUS27_HUMAN	dual specificity phosphatase 27	348					protein dephosphorylation		protein tyrosine/serine/threonine phosphatase activity			ovary(3)	3						CCTCATAGACGAGGAGGAGGAGG	0.655													4	8	---	---	---	---					
MARK1	4139	broad.mit.edu	37	1	220792013	220792013	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr1:220792013delT	uc001hmn.3	+	9	1422	c.825delT	c.(823-825)CGTfs	p.R275fs	MARK1_uc009xdw.2_Frame_Shift_Del_p.R275fs|MARK1_uc010pun.1_Frame_Shift_Del_p.R275fs|MARK1_uc001hmm.3_Frame_Shift_Del_p.R253fs	NM_018650	NP_061120	Q9P0L2	MARK1_HUMAN	MAP/microtubule affinity-regulating kinase 1	275	Protein kinase.				intracellular protein kinase cascade	cytoplasm|microtubule cytoskeleton	ATP binding|magnesium ion binding|protein serine/threonine kinase activity			ovary(4)|central_nervous_system(2)|skin(2)|stomach(1)|lung(1)	10				GBM - Glioblastoma multiforme(131;0.0407)		GGAAGTACCGTATTCCCTTCT	0.358													48	76	---	---	---	---					
CHORDC1	26973	broad.mit.edu	37	11	89956105	89956105	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr11:89956105delG	uc001pdg.2	-	1	428	c.18delC	c.(16-18)TACfs	p.Y6fs	CHORDC1_uc009yvz.2_Frame_Shift_Del_p.Y6fs	NM_012124	NP_036256	Q9UHD1	CHRD1_HUMAN	cysteine and histidine-rich domain-containing	6	Interaction with PPP5C (By similarity).|CHORD 1.				chaperone-mediated protein folding|regulation of response to stress|response to stress		Hsp90 protein binding|identical protein binding				0		Acute lymphoblastic leukemia(157;2.26e-05)|all_hematologic(158;0.00915)				AGCCCCGGTTGTAGCACAGCA	0.622													18	80	---	---	---	---					
CEP290	80184	broad.mit.edu	37	12	88512304	88512305	+	Frame_Shift_Ins	INS	-	T	T	rs77980773		TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr12:88512304_88512305insT	uc001tar.2	-	17	2010_2011	c.1666_1667insA	c.(1666-1668)ATTfs	p.I556fs	CEP290_uc001tat.2_Frame_Shift_Ins_p.I318fs|CEP290_uc009zsl.1_RNA	NM_025114	NP_079390	O15078	CE290_HUMAN	centrosomal protein 290kDa	556	Potential.				cilium assembly|eye photoreceptor cell development|G2/M transition of mitotic cell cycle|hindbrain development|otic vesicle formation|positive regulation of transcription, DNA-dependent|pronephros development|protein transport	cell surface|centrosome|cytosol|nucleus|photoreceptor connecting cilium	protein binding			ovary(5)|breast(1)|pancreas(1)	7						CATTTGACGAATTTTTTTTTTC	0.312													3	4	---	---	---	---					
NPAS3	64067	broad.mit.edu	37	14	34266732	34266733	+	Frame_Shift_Ins	INS	-	T	T			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr14:34266732_34266733insT	uc001wru.2	+	11	1435_1436	c.1371_1372insT	c.(1369-1374)GAATCCfs	p.E457fs	NPAS3_uc001wrs.2_Frame_Shift_Ins_p.E444fs|NPAS3_uc001wrt.2_Frame_Shift_Ins_p.E425fs|NPAS3_uc001wrv.2_Frame_Shift_Ins_p.E427fs	NM_173159	NP_071406	Q8IXF0	NPAS3_HUMAN	neuronal PAS domain protein 3 isoform 3	457_458					regulation of transcription, DNA-dependent|transcription, DNA-dependent	cytoplasm|nucleus	DNA binding|signal transducer activity			ovary(1)|skin(1)	2	Breast(36;0.0102)|Hepatocellular(127;0.133)		LUAD - Lung adenocarcinoma(48;0.00169)|Lung(238;0.00968)	GBM - Glioblastoma multiforme(1;1.31e-09)|all cancers(1;0.000112)|OV - Ovarian serous cystadenocarcinoma(311;0.115)		AAACTTCCGAATCCTCGGAGAC	0.510													39	186	---	---	---	---					
TGM5	9333	broad.mit.edu	37	15	43525426	43525426	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr15:43525426delT	uc001zrd.1	-	13	2134	c.2126delA	c.(2125-2127)AAGfs	p.K709fs	TGM5_uc001zrc.1_Frame_Shift_Del_p.K366fs|TGM5_uc001zre.1_Frame_Shift_Del_p.K627fs	NM_201631	NP_963925	O43548	TGM5_HUMAN	transglutaminase 5 isoform 1	709					epidermis development|peptide cross-linking	cytoplasm	acyltransferase activity|metal ion binding|protein-glutamine gamma-glutamyltransferase activity			central_nervous_system(1)	1		all_cancers(109;1.37e-14)|all_epithelial(112;1.26e-12)|Lung NSC(122;2.46e-08)|all_lung(180;2.75e-07)|Melanoma(134;0.0476)|Colorectal(260;0.216)		GBM - Glioblastoma multiforme(94;4e-07)	L-Glutamine(DB00130)	CCTGTAACCCTTAATGTCCTT	0.428													31	35	---	---	---	---					
PUS10	150962	broad.mit.edu	37	2	61169565	61169588	+	Splice_Site	DEL	CAGACTAGAAGGGAGAAAAGAAGT	-	-			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr2:61169565_61169588delCAGACTAGAAGGGAGAAAAGAAGT	uc010fci.2	-	18	1612	c.1552_splice	c.e18-1	p.S518_splice	PUS10_uc002sao.2_Splice_Site_p.S518_splice|PUS10_uc010ypk.1_Splice_Site_p.S295_splice	NM_144709	NP_653310	Q3MIT2	PUS10_HUMAN	pseudouridylate synthase 10						pseudouridine synthesis|tRNA processing		pseudouridine synthase activity|RNA binding			ovary(2)|large_intestine(1)|kidney(1)	4			LUSC - Lung squamous cell carcinoma(5;1.56e-06)|Lung(5;2.48e-05)|Epithelial(17;0.113)			TCAACATCTACAGACTAGAAGGGAGAAAAGAAGTCATTAAAACA	0.379													15	169	---	---	---	---					
SPINLW1	57119	broad.mit.edu	37	20	44174297	44174297	+	Frame_Shift_Del	DEL	T	-	-			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr20:44174297delT	uc002xou.2	-	2	236	c.204delA	c.(202-204)AAAfs	p.K68fs	SPINLW1_uc010zxc.1_Frame_Shift_Del_p.K68fs|SPINLW1_uc002xot.2_Frame_Shift_Del_p.K52fs|SPINLW1_uc002xov.1_Frame_Shift_Del_p.K68fs	NM_020398	NP_065131	O95925	EPPI_HUMAN	serine peptidase inhibitor-like, with Kunitz and	68	WAP.					extracellular region	serine-type endopeptidase inhibitor activity	p.C53fs*28(2)		pancreas(1)	1		Myeloproliferative disorder(115;0.0122)				GATCTAAACATTTTTTTCCGC	0.453													7	525	---	---	---	---					
SGSM1	129049	broad.mit.edu	37	22	25251026	25251026	+	Frame_Shift_Del	DEL	G	-	-			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr22:25251026delG	uc003abg.2	+	6	676	c.519delG	c.(517-519)TTGfs	p.L173fs	SGSM1_uc003abh.2_Frame_Shift_Del_p.L173fs|SGSM1_uc010guu.1_Frame_Shift_Del_p.L173fs|SGSM1_uc003abj.2_Frame_Shift_Del_p.L173fs|SGSM1_uc003abi.1_Frame_Shift_Del_p.L148fs|SGSM1_uc003abf.2_Frame_Shift_Del_p.L173fs	NM_001039948	NP_001035037	Q2NKQ1	SGSM1_HUMAN	RUN and TBC1 domain containing 2 isoform 1	173	RUN.					Golgi apparatus	Rab GTPase activator activity			ovary(2)|central_nervous_system(2)|pancreas(1)	5						TTGCATCTTTGTTGGGTAAGT	0.527													22	22	---	---	---	---					
IFRD1	3475	broad.mit.edu	37	7	112108045	112108046	+	Frame_Shift_Ins	INS	-	A	A			TCGA-EE-A3JB-06A-11D-A21A-08	TCGA-EE-A3JB-10A-01D-A21A-08									Somatic	Phase_I	Capture				Illumina GAIIx	83a6bd6b-723a-4d9a-ba35-d1ba420ccd82	7adaf90c-84fc-4fe6-99f3-702d1d631192	g.chr7:112108045_112108046insA	uc003vgh.2	+	10	1359_1360	c.916_917insA	c.(916-918)TATfs	p.Y306fs	IFRD1_uc011kmn.1_Frame_Shift_Ins_p.Y256fs|IFRD1_uc003vgj.2_Frame_Shift_Ins_p.Y306fs|IFRD1_uc011kmo.1_RNA|IFRD1_uc011kmp.1_Frame_Shift_Ins_p.Y256fs|IFRD1_uc003vgk.2_Frame_Shift_Ins_p.Y23fs	NM_001007245	NP_001007246	O00458	IFRD1_HUMAN	interferon-related developmental regulator 1	306					multicellular organismal development|myoblast cell fate determination		binding			kidney(1)|central_nervous_system(1)	2						GGACTTTTTTTATGAAGACATG	0.391													31	62	---	---	---	---					
